-- dump date 20140620_054502 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 439843000001 SEQ_END SEQ_END NC_011092.1 110227 110227 DR NC_011092.1; contig end 110227..110227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 439843000002 SEQ_END SEQ_END NC_011093.1 4585 4585 DR NC_011093.1; contig end 4585..4585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 439843000003 SEQ_END SEQ_END NC_011094.1 4709075 4709075 DR NC_011094.1; contig end 4709075..4709075 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112883.1 CDS SeSA_B0001 NC_011092.1 34 459 D identified by match to protein family HMM PF00717; protein SamA 34..459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112884.1 CDS umuC NC_011092.1 459 1730 D binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 459..1730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112885.1 CDS SeSA_B0003 NC_011092.1 1809 2060 D identified by match to protein family HMM TIGR01552; antitoxin of toxin-antitoxin stability system, StbD family 1809..2060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112886.1 CDS SeSA_B0004 NC_011092.1 2114 2419 D hypothetical protein 2114..2419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112887.1 CDS SeSA_B0005 NC_011092.1 2598 2798 D hypothetical protein 2598..2798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112888.1 CDS sopB NC_011092.1 3496 4467 R SopB; plasmid-partitioning protein complement(3496..4467) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112889.1 CDS sopA NC_011092.1 4467 5642 R identified by match to protein family HMM PF00376; match to protein family HMM PF01656; plasmid-partitioning protein SopA complement(4467..5642) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112890.1 CDS SeSA_B0008 NC_011092.1 6374 7384 D identified by match to protein family HMM PF01051; DNA replication protein 6374..7384 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112891.1 CDS SeSA_B0009 NC_011092.1 8174 8518 R identified by match to protein family HMM PF08212; outer membrane lipoprotein blc complement(8174..8518) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112892.1 CDS SeSA_B0010 NC_011092.1 8636 9361 D identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein 8636..9361 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112893.1 CDS uraH NC_011092.1 9461 9871 D identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 9461..9871 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112894.1 CDS SeSA_B0012 NC_011092.1 9974 10933 D identified by match to protein family HMM PF04463; match to protein family HMM PF08349; putative pathogenicity island protein 9974..10933 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112895.1 CDS SeSA_B0013 NC_011092.1 11079 12167 D identified by match to protein family HMM PF02463; RecF/RecN/SMC domain protein 11079..12167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112896.1 CDS SeSA_B0014 NC_011092.1 12230 12934 R identified by match to protein family HMM PF00665; IS26 transposase complement(12230..12934) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112897.1 CDS SeSA_B0015 NC_011092.1 13198 14271 R hypothetical protein complement(13198..14271) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112898.1 CDS SeSA_B0016 NC_011092.1 14315 14464 R hypothetical protein complement(14315..14464) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112899.1 CDS SeSA_B0017 NC_011092.1 14806 15045 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 14806..15045 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112900.1 CDS SeSA_B0018 NC_011092.1 15045 15332 D identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; toxin RelE 15045..15332 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112901.1 CDS SeSA_B0019 NC_011092.1 15636 16418 R identified by match to protein family HMM PF01695; transposase/IS protein complement(15636..16418) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112902.1 CDS SeSA_B0020 NC_011092.1 16415 17437 R identified by match to protein family HMM PF00665; transposase for insertion sequence complement(16415..17437) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112903.1 CDS SeSA_B0021 NC_011092.1 18237 20444 D hypothetical protein 18237..20444 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112904.1 CDS SeSA_B0022 NC_011092.1 20447 23029 D EstP 20447..23029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112905.1 CDS SeSA_B0023 NC_011092.1 23075 23287 R transposase complement(23075..23287) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112906.1 CDS SeSA_B0024 NC_011092.1 23450 24280 R identified by match to protein family HMM PF00665; integrase core domain protein complement(23450..24280) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112907.1 CDS SeSA_B0026 NC_011092.1 24307 24570 R identified by match to protein family HMM PF01527; transposase subfamily complement(24307..24570) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112908.1 CDS SeSA_B0027 NC_011092.1 24999 25976 R identified by match to protein family HMM PF00589; integrase/recombinase complement(24999..25976) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112909.1 CDS SeSA_B0029 NC_011092.1 26373 26537 D identified by match to protein family HMM PF03400; IS1 protein InsB 26373..26537 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112910.1 CDS SeSA_B0030 NC_011092.1 27048 28868 R identified by match to protein family HMM PF01526; transposase complement(27048..28868) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112911.1 CDS SeSA_B0031 NC_011092.1 29333 30217 D identified by match to protein family HMM PF00892; drug/metabolite transporter 29333..30217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112912.1 CDS tetA NC_011092.1 30249 31448 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00880; tetracycline resistance protein, class A complement(30249..31448) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112913.1 CDS tetR NC_011092.1 31527 32204 D identified by match to protein family HMM PF00440; match to protein family HMM PF02909; tetracycline repressor protein, class A 31527..32204 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112914.1 CDS SeSA_B0034 NC_011092.1 32236 32478 R hypothetical protein complement(32236..32478) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112915.1 CDS SeSA_B0035 NC_011092.1 32536 33303 R identified by match to protein family HMM PF01526; transposase complement(32536..33303) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112916.1 CDS SeSA_B0036 NC_011092.1 33549 36521 R identified by match to protein family HMM PF01526; Tn3 family transposase complement(33549..36521) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112917.1 CDS SeSA_B0037 NC_011092.1 36524 37141 R identified by match to protein family HMM PF00239; match to protein family HMM PF02796; transposon Tn21 resolvase complement(36524..37141) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112918.1 CDS SeSA_B0038 NC_011092.1 37249 37428 D putative transcriptional regulator 37249..37428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112919.1 CDS SeSA_B0039 NC_011092.1 37387 37866 R identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249; integrase/recombinase complement(37387..37866) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112920.1 CDS SeSA_B0040 NC_011092.1 37923 38627 R identified by match to protein family HMM PF00665; IS26 transposase complement(37923..38627) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112921.1 CDS SeSA_B0041 NC_011092.1 38674 39942 R identified by match to protein family HMM PF00665; TniAdelta1 complement(38674..39942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112922.1 CDS SeSA_B0042 NC_011092.1 40017 40724 R identified by match to protein family HMM PF00563; Urf2 complement(40017..40724) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112923.1 CDS SeSA_B0043 NC_011092.1 40721 40957 R identified by match to protein family HMM PF05052; putative mercury resistance protein complement(40721..40957) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112924.1 CDS merD NC_011092.1 40954 41316 R identified by match to protein family HMM PF00376; match to protein family HMM TIGR02054; transcriptional regulator MerD complement(40954..41316) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112925.1 CDS merA NC_011092.1 41334 43028 R identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; putative mercuric reductase complement(41334..43028) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112926.1 CDS blaT NC_011092.1 43192 44052 R identified by match to protein family HMM PF00144; beta-lactamase TEM complement(43192..44052) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112927.1 CDS SeSA_B0048 NC_011092.1 44446 45150 D identified by match to protein family HMM PF00665; IS26 transposase 44446..45150 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112928.1 CDS SeSA_B0049 NC_011092.1 45214 45330 D identified by glimmer; putative; hypothetical protein 45214..45330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112929.1 CDS SeSA_B0050 NC_011092.1 45485 45877 D identified by match to protein family HMM PF01243; NimC/NimA family protein 45485..45877 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112930.1 CDS SeSA_B0051 NC_011092.1 46197 46313 R bleomycin resistance protein complement(46197..46313) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112931.1 CDS SeSA_B0052 NC_011092.1 46715 49681 R identified by match to protein family HMM PF01526; Tn3 family transposase complement(46715..49681) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112932.1 CDS SeSA_B0053 NC_011092.1 49684 50244 R identified by match to protein family HMM PF00239; match to protein family HMM PF02796; transposon Tn21 resolvase complement(49684..50244) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112933.1 CDS SeSA_B0054 NC_011092.1 50306 50554 R insertion sequence complement(50306..50554) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112934.1 CDS SeSA_B0055 NC_011092.1 50555 51259 D identified by match to protein family HMM PF00665; IS26 transposase 50555..51259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112935.1 CDS SeSA_B0056 NC_011092.1 51299 51571 D hypothetical protein 51299..51571 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112936.1 CDS SeSA_B0057 NC_011092.1 51717 52580 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 51717..52580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112937.1 CDS SeSA_B0058 NC_011092.1 52549 52725 R identified by glimmer; putative; hypothetical protein complement(52549..52725) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112938.1 CDS SeSA_B0059 NC_011092.1 53014 53241 D identified by glimmer; putative; hypothetical protein 53014..53241 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112939.1 CDS folP NC_011092.1 53332 54123 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 53332..54123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112940.1 CDS SeSA_B0061 NC_011092.1 54373 55056 D identified by match to protein family HMM PF00872; transposase, Mutator family 54373..55056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112941.1 CDS SeSA_B0062 NC_011092.1 55303 55635 R identified by match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacE complement(55303..55635) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112942.1 CDS SeSA_B0063 NC_011092.1 55805 56596 R streptomycin 3'-adenyltransferase; aminoglycoside resistance protein complement(55805..56596) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112943.1 CDS SeSA_B0064 NC_011092.1 56689 57948 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; match to protein family HMM TIGR00880; chloramphenicol resistance protein complement(56689..57948) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112944.1 CDS aadA NC_011092.1 58210 59001 R streptomycin 3'-adenyltransferase; aminoglycoside resistance protein complement(58210..59001) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112945.1 CDS SeSA_B0066 NC_011092.1 59059 59667 R HAD-superfamily, subfamily IB hydrolase complement(59059..59667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112946.1 CDS sat NC_011092.1 59763 60773 R identified by match to protein family HMM PF00561; streptothricin acetyltransferase Sat-1 complement(59763..60773) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112947.1 CDS SeSA_B0067 NC_011092.1 60772 61785 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02249; integrase/recombinase 60772..61785 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112948.1 CDS SeSA_B0069 NC_011092.1 61744 61923 R putative transcriptional regulator complement(61744..61923) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112949.1 CDS SeSA_B0070 NC_011092.1 62277 62981 R identified by match to protein family HMM PF00665; IS26 transposase complement(62277..62981) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112950.1 CDS SeSA_B0071 NC_011092.1 62993 63667 R transposase complement(62993..63667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112951.1 CDS SeSA_B0072 NC_011092.1 63612 65252 D identified by match to protein family HMM PF01526; transposase 63612..65252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112952.1 CDS SeSA_B0074 NC_011092.1 65318 65737 R TraB protein complement(65318..65737) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112953.1 CDS SeSA_B0073 NC_011092.1 65718 65846 D identified by glimmer; putative; hypothetical protein 65718..65846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112954.1 CDS SeSA_B0075 NC_011092.1 65850 66422 R identified by match to protein family HMM PF03743; conjugal transfer protein TrbI complement(65850..66422) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112955.1 CDS SeSA_B0076 NC_011092.1 66574 67278 R identified by match to protein family HMM PF00665; IS26 transposase complement(66574..67278) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112956.1 CDS SeSA_B0077 NC_011092.1 67375 67554 D replication initiator protein 67375..67554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112957.1 CDS SeSA_B0078 NC_011092.1 68170 68874 R identified by match to protein family HMM PF00665; IS26 transposase complement(68170..68874) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112958.1 CDS SeSA_B0079 NC_011092.1 68933 70240 D identified by match to protein family HMM PF01526; transposase 68933..70240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112959.1 CDS SeSA_B0080 NC_011092.1 70314 70775 R identified by match to protein family HMM PF03203; putative mercury transport protein MerC complement(70314..70775) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112960.1 CDS merP NC_011092.1 70772 71047 R identified by match to protein family HMM PF00403; match to protein family HMM TIGR02052; mercuric transport protein periplasmic component complement(70772..71047) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112961.1 CDS SeSA_B0082 NC_011092.1 71061 71411 R identified by match to protein family HMM PF02411; putative mercuric transport protein complement(71061..71411) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112962.1 CDS merR NC_011092.1 71483 71917 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02051; putative transcriptional regulator MerR 71483..71917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112963.1 CDS SeSA_B0084 NC_011092.1 71907 72689 R identified by match to protein family HMM PF04655; streptomycin phosphotransferase B complement(71907..72689) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112964.1 CDS strA NC_011092.1 72689 73678 R identified by match to protein family HMM PF01636; aminoglycoside resistance protein A complement(72689..73678) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112965.1 CDS SeSA_B0086 NC_011092.1 73906 74547 R hypothetical protein complement(73906..74547) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112966.1 CDS SeSA_B0089 NC_011092.1 75588 75764 R phage integrase family protein complement(75588..75764) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112967.1 CDS sul2 NC_011092.1 76091 76906 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase type-2 76091..76906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112968.1 CDS SeSA_B0091 NC_011092.1 76993 77295 D identified by match to protein family HMM PF02878; phosphoglucosamine mutase 76993..77295 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112969.1 CDS SeSA_B0092 NC_011092.1 77471 78964 R identified by match to protein family HMM PF04986; iscr2 transposase complement(77471..78964) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112970.1 CDS SeSA_B0094 NC_011092.1 79396 80133 R identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase complement(79396..80133) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112971.1 CDS SeSA_B0095 NC_011092.1 80619 80759 R hypothetical protein complement(80619..80759) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112972.1 CDS SeSA_B0096 NC_011092.1 80765 81469 R identified by match to protein family HMM PF00665; IS26 transposase complement(80765..81469) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112973.1 CDS SeSA_B0097 NC_011092.1 81549 82049 D hypothetical protein 81549..82049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112974.1 CDS cmlA NC_011092.1 82199 82840 D identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase 2 82199..82840 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112975.1 CDS SeSA_B0099 NC_011092.1 82984 83688 R identified by match to protein family HMM PF00665; IS26 transposase complement(82984..83688) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112976.1 CDS SeSA_B0100 NC_011092.1 83905 85623 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase complement(83905..85623) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112977.1 CDS SeSA_B0101 NC_011092.1 85620 86108 R oxidoreductase molybdopterin binding complement(85620..86108) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112978.1 CDS SeSA_B0102 NC_011092.1 86101 87054 R hypothetical protein complement(86101..87054) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112979.1 CDS SeSA_B0103 NC_011092.1 87088 88002 R identified by match to protein family HMM PF00072; match to protein family HMM PF08667; response regulator receiver protein complement(87088..88002) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112980.1 CDS SeSA_B0104 NC_011092.1 88316 88624 D hypothetical protein 88316..88624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112981.1 CDS SeSA_B0105 NC_011092.1 88617 88832 D identified by glimmer; putative; hypothetical protein 88617..88832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112982.1 CDS SeSA_B0106 NC_011092.1 88835 89497 D identified by match to protein family HMM PF01464; type IV secretory pathway VirB1 component 88835..89497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112983.1 CDS SeSA_B0107 NC_011092.1 89508 89807 D identified by match to protein family HMM PF04956; conjugal transfer protein TrbC 89508..89807 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112984.1 CDS SeSA_B0108 NC_011092.1 89817 92567 D identified by match to protein family HMM PF03135; match to protein family HMM PF05101; TriC protein 89817..92567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112985.1 CDS SeSA_B0109 NC_011092.1 92586 93302 D identified by match to protein family HMM PF07996; TriD protein 92586..93302 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112986.1 CDS SeSA_B0110 NC_011092.1 93314 93598 D putative entry exclusion protein 93314..93598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112987.1 CDS SeSA_B0111 NC_011092.1 93616 94623 D identified by match to protein family HMM PF04610; TriE protein 93616..94623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112988.1 CDS SeSA_B0112 NC_011092.1 94700 94840 D hypothetical protein 94700..94840 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112989.1 CDS SeSA_B0113 NC_011092.1 94833 95519 D identified by match to protein family HMM PF04335; TriG protein 94833..95519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112990.1 CDS virB9 NC_011092.1 95512 96405 D identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781; P-type conjugative transfer protein VirB9 95512..96405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112991.1 CDS SeSA_B0115 NC_011092.1 96402 97598 D identified by match to protein family HMM PF03743; TriI protein 96402..97598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112992.1 CDS virB1 NC_011092.1 97602 98651 D identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788; P-type DNA transfer ATPase VirB11 97602..98651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112993.1 CDS SeSA_B0117 NC_011092.1 98638 99039 D hypothetical protein 98638..99039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112994.1 CDS SeSA_B0118 NC_011092.1 99130 99447 D killer protein 99130..99447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112995.1 CDS SeSA_B0119 NC_011092.1 99474 99809 D hypothetical protein 99474..99809 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112996.1 CDS SeSA_B0120 NC_011092.1 99827 100093 D hypothetical plasmid protein 99827..100093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112997.1 CDS SeSA_B0121 NC_011092.1 100090 102291 D identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 3 100090..102291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112998.1 CDS SeSA_B0122 NC_011092.1 102288 102680 D identified by match to protein family HMM PF00816; DNA binding protein 102288..102680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002112999.1 CDS SeSA_B0123 NC_011092.1 102750 102875 D identified by glimmer; putative; hypothetical protein 102750..102875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113000.1 CDS SeSA_B0124 NC_011092.1 103389 105296 D mobilization protein 103389..105296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113001.1 CDS SeSA_B0125 NC_011092.1 105311 106057 D mobilization protein 105311..106057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113002.1 CDS SeSA_B0126 NC_011092.1 106050 106577 D phospholipase D (PLD) family protein 106050..106577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113003.1 CDS SeSA_B0127 NC_011092.1 106609 107040 R identified by glimmer; putative; hypothetical protein complement(106609..107040) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113004.1 CDS SeSA_B0128 NC_011092.1 107520 108485 R identified by match to protein family HMM PF08401; antirestriction protein complement(107520..108485) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113005.1 CDS SeSA_C0001 NC_011093.1 160 1095 R identified by match to protein family HMM PF03090; match to protein family HMM PF08708; replication protein complement(160..1095) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113006.1 CDS SeSA_C0002 NC_011093.1 1596 1931 D identified by glimmer; putative; hypothetical protein 1596..1931 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113007.1 CDS SeSA_C0003 NC_011093.1 1983 2306 R hypothetical protein complement(1983..2306) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113008.1 CDS SeSA_C0004 NC_011093.1 2398 3933 R identified by match to protein family HMM PF03389; 43 kDa relaxation protein complement(2398..3933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113009.1 CDS SeSA_C0005 NC_011093.1 4018 4551 D hypothetical protein 4018..4551 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113010.1 CDS thrA NC_011094.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113011.1 CDS thrB NC_011094.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113012.1 CDS thrC NC_011094.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113013.1 CDS SeSA_A0005 NC_011094.1 5114 5887 R identified by match to protein family HMM PF03883; hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113014.1 CDS SeSA_A0006 NC_011094.1 5966 7423 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT complement(5966..7423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113015.1 CDS tal2 NC_011094.1 7665 8618 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113016.1 CDS mogA NC_011094.1 8729 9319 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 8729..9319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113017.1 CDS SeSA_A0009 NC_011094.1 9376 9942 R identified by match to protein family HMM PF01184; hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113018.1 CDS SeSA_A0010 NC_011094.1 10092 10805 R identified by match to protein family HMM PF03667; hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113019.1 CDS SeSA_A0011 NC_011094.1 10841 11236 R hypothetical protein complement(10841..11236) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113020.1 CDS SeSA_A0012 NC_011094.1 11300 11425 D identified by glimmer; hypothetical protein 11300..11425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113021.1 CDS dnaK NC_011094.1 11594 13510 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11594..13510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113022.1 CDS dnaJ NC_011094.1 13596 14735 D 'chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion'; molecular chaperone DnaJ 13596..14735 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113023.1 CDS SeSA_A0015 NC_011094.1 14847 14960 D identified by glimmer; hypothetical protein 14847..14960 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113024.1 CDS SeSA_A0016 NC_011094.1 15016 15963 D identified by match to protein family HMM PF00126; transcriptional regulator 15016..15963 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113025.1 CDS SeSA_A0017 NC_011094.1 16132 16434 D bacteriophage protein 16132..16434 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113026.1 CDS SeSA_A0018 NC_011094.1 16495 17028 R identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein complement(16495..17028) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113027.1 CDS SeSA_A0019 NC_011094.1 17045 17488 R hypothetical protein complement(17045..17488) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113028.1 CDS SeSA_A0020 NC_011094.1 17869 19968 D identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 17869..19968 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113029.1 CDS SeSA_A0021 NC_011094.1 20061 23057 D hydroxymethyltransferase 20061..23057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113030.1 CDS SeSA_A0022 NC_011094.1 23349 24041 D hypothetical protein 23349..24041 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113031.1 CDS SeSA_A0023 NC_011094.1 24472 25014 D identified by match to protein family HMM PF00419; fimbrial protein 24472..25014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113032.1 CDS SeSA_A0024 NC_011094.1 25116 25802 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 25116..25802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113033.1 CDS SeSA_A0025 NC_011094.1 25762 28428 D identified by match to protein family HMM PF00577; outer membrane usher protein FimD 25762..28428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113034.1 CDS SeSA_A0026 NC_011094.1 28429 29436 D identified by match to protein family HMM PF00419; mannose binding protein FimH 28429..29436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113035.1 CDS SeSA_A0027 NC_011094.1 29467 29982 D identified by match to protein family HMM PF00419; fimbrial protein 29467..29982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113036.1 CDS SeSA_A0028 NC_011094.1 29998 30516 D identified by match to protein family HMM PF00419; fimbrial protein 29998..30516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113037.1 CDS SeSA_A0029 NC_011094.1 30476 31213 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 30476..31213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119758.1 CDS SeSA_A0030 NC_011094.1 31278 32123 D hypothetical protein 31278..32123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113038.1 CDS SeSA_A0031 NC_011094.1 32162 32449 D hypothetical protein 32162..32449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113039.1 CDS SeSA_A0032 NC_011094.1 32549 32998 R hypothetical protein complement(32549..32998) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113040.1 CDS SeSA_A0033 NC_011094.1 33368 34372 D identified by match to protein family HMM PF00126; transcriptional regulator 33368..34372 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113041.1 CDS SeSA_A0034 NC_011094.1 34380 34817 R transcriptional regulator complement(34380..34817) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113042.1 CDS SeSA_A0035 NC_011094.1 34829 34975 D identified by glimmer; hypothetical protein 34829..34975 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113043.1 CDS SeSA_A0036 NC_011094.1 35340 37058 D identified by match to protein family HMM PF05935; arylsulfotransferase 35340..37058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113044.1 CDS SeSA_A0037 NC_011094.1 37104 38675 R identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase complement(37104..38675) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113045.1 CDS SeSA_A0038 NC_011094.1 38774 39535 R identified by match to protein family HMM PF07135; outer membrane/exported protein complement(38774..39535) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113046.1 CDS SeSA_A0039 NC_011094.1 39843 40028 R identified by glimmer; hypothetical protein complement(39843..40028) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113047.1 CDS SeSA_A0040 NC_011094.1 40130 41623 D identified by match to protein family HMM PF00884; sulfatase 40130..41623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113048.1 CDS SeSA_A0041 NC_011094.1 41722 42912 D identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 41722..42912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113049.1 CDS SeSA_A0042 NC_011094.1 42937 44184 D hypothetical protein 42937..44184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113050.1 CDS SeSA_A0043 NC_011094.1 44311 46026 D identified by match to protein family HMM PF05935; arylsulfotransferase 44311..46026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113051.1 CDS nhaA NC_011094.1 46189 47355 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 46189..47355 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113052.1 CDS nhaR NC_011094.1 47417 48316 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 47417..48316 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113053.1 CDS SeSA_A0046 NC_011094.1 48371 50410 R identified by match to protein family HMM PF01055; glycoside hydrolase, family 31 complement(48371..50410) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113054.1 CDS SeSA_A0047 NC_011094.1 50450 51823 R identified by match to protein family HMM TIGR00792; xylose-proton symporter complement(50450..51823) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113055.1 CDS rpsT NC_011094.1 52284 52547 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(52284..52547) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113056.1 CDS ribF NC_011094.1 52876 53814 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 52876..53814 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113057.1 CDS ileS NC_011094.1 53823 56693 D 'IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme'; isoleucyl-tRNA synthetase 53823..56693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113058.1 CDS lspA NC_011094.1 56693 57193 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 56693..57193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113059.1 CDS SeSA_A0052 NC_011094.1 57207 57338 D identified by glimmer; hypothetical protein 57207..57338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113060.1 CDS fkpB NC_011094.1 57348 57797 D identified by match to protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 57348..57797 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113061.1 CDS ispH NC_011094.1 57800 58750 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57800..58750 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113062.1 CDS SeSA_A0055 NC_011094.1 58862 58990 R identified by glimmer; hypothetical protein complement(58862..58990) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113063.1 CDS SeSA_A0056 NC_011094.1 59001 60152 D hypothetical protein 59001..60152 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113064.1 CDS SeSA_A0057 NC_011094.1 60168 61088 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 60168..61088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113065.1 CDS SeSA_A0058 NC_011094.1 61110 61796 R identified by match to protein family HMM PF00072; transcriptional regulatory protein CitB complement(61110..61796) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113066.1 CDS SeSA_A0059 NC_011094.1 61798 63456 R identified by match to protein family HMM PF02518; sensor kinase DpiB complement(61798..63456) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113067.1 CDS SeSA_A0060 NC_011094.1 63552 64853 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(63552..64853) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113068.1 CDS oadA NC_011094.1 64866 66635 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(64866..66635) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113069.1 CDS SeSA_A0062 NC_011094.1 66651 66890 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(66651..66890) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113070.1 CDS SeSA_A0063 NC_011094.1 67049 68389 R identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter complement(67049..68389) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113071.1 CDS citC NC_011094.1 68646 69677 D identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 68646..69677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113072.1 CDS citD NC_011094.1 69707 70000 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69707..70000 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113073.1 CDS citE NC_011094.1 69997 70866 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 69997..70866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113074.1 CDS citF NC_011094.1 70877 72397 D identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 70877..72397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113075.1 CDS citX NC_011094.1 72397 72948 D identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 72397..72948 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113076.1 CDS citG NC_011094.1 72926 73834 D identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 72926..73834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113077.1 CDS dapB NC_011094.1 74014 74835 D 'catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis'; dihydrodipicolinate reductase 74014..74835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113080.1 CDS SeSA_A0073 NC_011094.1 75520 75663 D hypothetical protein 75520..75663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113081.1 CDS carA NC_011094.1 75873 77021 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 75873..77021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113082.1 CDS carB NC_011094.1 77040 80267 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 77040..80267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119759.1 CDS SeSA_A0076 NC_011094.1 80541 80936 D transcriptional activatory protein CaiF 80541..80936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113083.1 CDS SeSA_A0077 NC_011094.1 81013 81609 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(81013..81609) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113084.1 CDS SeSA_A0078 NC_011094.1 81719 82504 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(81719..82504) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113085.1 CDS caiC NC_011094.1 82558 84111 R identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase complement(82558..84111) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113086.1 CDS caiB NC_011094.1 84174 85445 R 'catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine'; crotonobetainyl-CoA:carnitine CoA-transferase complement(84174..85445) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113087.1 CDS caiA NC_011094.1 85503 86645 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(85503..86645) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113088.1 CDS caiT NC_011094.1 86680 88197 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(86680..88197) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113089.1 CDS SeSA_A0083 NC_011094.1 88339 88455 D identified by glimmer; hypothetical protein 88339..88455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113090.1 CDS SeSA_A0084 NC_011094.1 88425 88610 D hypothetical protein 88425..88610 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113091.1 CDS fixA NC_011094.1 88678 89448 D 'required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase'; electron transfer flavoprotein FixA 88678..89448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113092.1 CDS fixB NC_011094.1 89464 90405 D involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 89464..90405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113093.1 CDS fixC NC_011094.1 90455 91741 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 90455..91741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113094.1 CDS SeSA_A0088 NC_011094.1 91738 92025 D 4Fe-4S ferredoxin 91738..92025 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113095.1 CDS SeSA_A0089 NC_011094.1 92106 93512 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 92106..93512 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113096.1 CDS SeSA_A0090 NC_011094.1 93601 93831 D identified by match to protein family HMM PF06004; hypothetical protein 93601..93831 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113097.1 CDS SeSA_A0091 NC_011094.1 94125 94547 D hypothetical protein 94125..94547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113098.1 CDS SeSA_A0092 NC_011094.1 94551 94667 R identified by glimmer; hypothetical protein complement(94551..94667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113099.1 CDS SeSA_A0093 NC_011094.1 94771 95061 R identified by match to protein family HMM PF07338; hypothetical protein complement(94771..95061) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113100.1 CDS SeSA_A0094 NC_011094.1 95959 97848 D identified by match to protein family HMM PF00884; match to protein family HMM TIGR01409; sulfatase 95959..97848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113101.1 CDS kefF NC_011094.1 98402 98932 D 'Required for full activity of KefC, a potassium-proton antiporter'; glutathione-regulated potassium-efflux system ancillary protein KefF 98402..98932 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113102.1 CDS SeSA_A0096 NC_011094.1 98925 100787 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 98925..100787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113103.1 CDS SeSA_A0097 NC_011094.1 100784 100909 R identified by glimmer; hypothetical protein complement(100784..100909) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113104.1 CDS folA NC_011094.1 100986 101465 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 100986..101465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113105.1 CDS apaH NC_011094.1 101573 102421 R 'hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP'; diadenosine tetraphosphatase complement(101573..102421) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113106.1 CDS apaG NC_011094.1 102432 102809 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(102432..102809) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113107.1 CDS ksgA NC_011094.1 102812 103633 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(102812..103633) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113108.1 CDS pdxA NC_011094.1 103630 104619 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(103630..104619) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113109.1 CDS surA NC_011094.1 104619 105905 R 'Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB'; peptidyl-prolyl cis-trans isomerase SurA complement(104619..105905) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113110.1 CDS imp NC_011094.1 105959 108313 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(105959..108313) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113111.1 CDS SeSA_A0105 NC_011094.1 108323 108484 R identified by glimmer; hypothetical protein complement(108323..108484) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113112.1 CDS djlA NC_011094.1 108567 109379 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 108567..109379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113113.1 CDS SeSA_A0107 NC_011094.1 109474 110133 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(109474..110133) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113114.1 CDS rapA NC_011094.1 110145 113051 R 'transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA'; ATP-dependent helicase HepA complement(110145..113051) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113115.1 CDS SeSA_A0109 NC_011094.1 113225 115576 R 'Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C'; DNA polymerase II complement(113225..115576) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113116.1 CDS SeSA_A0110 NC_011094.1 115620 116240 R identified by match to protein family HMM PF02698; hypothetical protein complement(115620..116240) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113117.1 CDS SeSA_A0111 NC_011094.1 116731 117177 D hypothetical protein 116731..117177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113118.1 CDS araD NC_011094.1 117183 117878 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(117183..117878) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113119.1 CDS araA NC_011094.1 118019 119521 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(118019..119521) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113120.1 CDS araB NC_011094.1 119532 121241 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(119532..121241) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113121.1 CDS SeSA_A0115 NC_011094.1 121582 122427 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 121582..122427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113122.1 CDS SeSA_A0116 NC_011094.1 122546 123313 D identified by match to protein family HMM PF09335; hypothetical protein 122546..123313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113123.1 CDS thiQ NC_011094.1 123352 124059 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(123352..124059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113124.1 CDS thiP NC_011094.1 124043 125653 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(124043..125653) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113125.1 CDS tbpA NC_011094.1 125629 126612 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(125629..126612) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113126.1 CDS SeSA_A0121 NC_011094.1 126657 126776 R lipoprotein complement(126657..126776) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113127.1 CDS sgrR NC_011094.1 126790 128448 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(126790..128448) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113128.1 CDS SeSA_A0125 NC_011094.1 128815 128928 D identified by glimmer; hypothetical protein 128815..128928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113129.1 CDS leuD NC_011094.1 128949 129554 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(128949..129554) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113130.1 CDS leuC NC_011094.1 129565 130965 R 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit complement(129565..130965) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113131.1 CDS leuB NC_011094.1 130968 132059 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(130968..132059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113132.1 CDS leuA NC_011094.1 132059 133630 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(132059..133630) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113133.1 CDS leuO NC_011094.1 134462 135406 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 134462..135406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113134.1 CDS ilvI NC_011094.1 135698 137452 D 'catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive'; acetolactate synthase 3 catalytic subunit 135698..137452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113135.1 CDS ilvH NC_011094.1 137452 137961 D 'with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit'; acetolactate synthase 3 regulatory subunit 137452..137961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113136.1 CDS fruR NC_011094.1 138228 139232 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 138228..139232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113137.1 CDS mraZ NC_011094.1 139839 140297 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 139839..140297 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113138.1 CDS mraW NC_011094.1 140299 141240 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 140299..141240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113139.1 CDS ftsL NC_011094.1 141237 141602 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141237..141602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113140.1 CDS ftsI NC_011094.1 141618 143384 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 141618..143384 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113141.1 CDS murE NC_011094.1 143371 144858 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143371..144858 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113142.1 CDS murF NC_011094.1 144855 146213 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 144855..146213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113143.1 CDS mraY NC_011094.1 146207 147289 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 146207..147289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113144.1 CDS murD NC_011094.1 147292 148608 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 147292..148608 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113145.1 CDS ftsW NC_011094.1 148608 149852 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 148608..149852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113146.1 CDS murG NC_011094.1 149849 150916 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 149849..150916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113147.1 CDS murC NC_011094.1 151035 152510 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 151035..152510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113148.1 CDS ddl NC_011094.1 152503 153423 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 152503..153423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113149.1 CDS ftsQ NC_011094.1 153425 154255 D involved in septum formation; cell division protein FtsQ 153425..154255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113150.1 CDS ftsA NC_011094.1 154252 155514 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 154252..155514 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113151.1 CDS ftsZ NC_011094.1 155576 156727 D 'GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function'; cell division protein FtsZ 155576..156727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113152.1 CDS lpxC NC_011094.1 156828 157745 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 156828..157745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119760.1 CDS secM NC_011094.1 158024 158521 D SecA regulator protein SecM 158024..158521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113153.1 CDS secA NC_011094.1 158583 161288 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 158583..161288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113154.1 CDS SeSA_A0153 NC_011094.1 161440 161835 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 161440..161835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113155.1 CDS SeSA_A0155 NC_011094.1 162150 162341 R identified by match to protein family HMM PF03884; zinc-binding protein complement(162150..162341) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113156.1 CDS SeSA_A0156 NC_011094.1 162351 163094 R identified by match to protein family HMM PF07072; hypothetical protein complement(162351..163094) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113157.1 CDS coaE NC_011094.1 163094 163714 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(163094..163714) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113158.1 CDS guaC NC_011094.1 163940 164983 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 163940..164983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113159.1 CDS SeSA_A0159 NC_011094.1 165014 166216 R identified by match to protein family HMM PF00482; type IV pilin biogenesis protein complement(165014..166216) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113160.1 CDS SeSA_A0160 NC_011094.1 166206 167591 R identified by match to protein family HMM PF00437; hypothetical protein complement(166206..167591) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113161.1 CDS SeSA_A0161 NC_011094.1 167601 168038 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit complement(167601..168038) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113162.1 CDS nadC NC_011094.1 168260 169153 R 'catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide'; quinolinate phosphoribosyltransferase complement(168260..169153) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113163.1 CDS SeSA_A0163 NC_011094.1 169241 169804 D identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 169241..169804 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113164.1 CDS SeSA_A0164 NC_011094.1 169801 170655 D involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 169801..170655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113165.1 CDS SeSA_A0165 NC_011094.1 170747 171697 R identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase complement(170747..171697) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113166.1 CDS SeSA_A0167 NC_011094.1 171697 173103 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; Na+/galactoside symporter complement(171697..173103) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113167.1 CDS SeSA_A0166 NC_011094.1 173057 173182 D identified by glimmer; hypothetical protein 173057..173182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113168.1 CDS SeSA_A0168 NC_011094.1 173267 174637 R identified by match to protein family HMM PF00324; aromatic amino acid transporter complement(173267..174637) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113169.1 CDS SeSA_A0169 NC_011094.1 174846 174968 D identified by glimmer; hypothetical protein 174846..174968 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113170.1 CDS pdhR NC_011094.1 175203 175967 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 175203..175967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113171.1 CDS aceE NC_011094.1 176127 178790 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 176127..178790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113172.1 CDS aceF NC_011094.1 178805 180691 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 178805..180691 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113173.1 CDS lpdA NC_011094.1 180891 182315 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 180891..182315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113174.1 CDS SeSA_A0174 NC_011094.1 182402 182521 D identified by glimmer; hypothetical protein 182402..182521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113175.1 CDS SeSA_A0175 NC_011094.1 182604 182888 D hypothetical protein 182604..182888 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113176.1 CDS SeSA_A0176 NC_011094.1 182926 183717 R hypothetical protein complement(182926..183717) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113177.1 CDS SeSA_A0177 NC_011094.1 183730 185325 R outer membrane protein complement(183730..185325) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113178.1 CDS acnB NC_011094.1 185714 188311 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185714..188311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113179.1 CDS SeSA_A0179 NC_011094.1 188500 188862 D identified by match to protein family HMM PF06062; hypothetical protein 188500..188862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113180.2 CDS SeSA_A0180 NC_011094.1 189096 190049 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 189096..190049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113181.1 CDS SeSA_A0181 NC_011094.1 190046 191317 D identified by match to protein family HMM PF07005; hypothetical protein 190046..191317 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113182.1 CDS pdxA NC_011094.1 191307 192290 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 191307..192290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113183.1 CDS SeSA_A0183 NC_011094.1 192300 193067 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR-family transcriptional regulator 192300..193067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113184.1 CDS speD NC_011094.1 193097 193891 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(193097..193891) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113185.1 CDS speE NC_011094.1 193912 194772 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(193912..194772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113186.1 CDS SeSA_A0186 NC_011094.1 194879 195226 R hypothetical protein complement(194879..195226) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113187.1 CDS SeSA_A0187 NC_011094.1 195428 197038 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 195428..197038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113188.1 CDS gcd NC_011094.1 197116 199506 R identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase complement(197116..199506) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113189.1 CDS hpt NC_011094.1 199712 200248 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 199712..200248 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113190.1 CDS SeSA_A0190 NC_011094.1 200306 200968 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(200306..200968) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113191.1 CDS SeSA_A0191 NC_011094.1 201077 202003 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 201077..202003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113192.1 CDS SeSA_A0192 NC_011094.1 202000 202770 D identified by match to protein family HMM PF01061; ABC transporter permease 202000..202770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113193.1 CDS SeSA_A0193 NC_011094.1 202888 203964 R identified by match to protein family HMM PF00419; fimbrial protein precurosr complement(202888..203964) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113194.1 CDS SeSA_A0194 NC_011094.1 203973 206519 R identified by match to protein family HMM PF00577; outer membrane usher protein FimD complement(203973..206519) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113195.1 CDS SeSA_A0195 NC_011094.1 206546 207229 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC complement(206546..207229) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113196.1 CDS SeSA_A0196 NC_011094.1 207277 207828 R identified by match to protein family HMM PF00419; fimbrial protein complement(207277..207828) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113197.1 CDS SeSA_A0197 NC_011094.1 207941 208069 D identified by glimmer; hypothetical protein 207941..208069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113198.1 CDS SeSA_A0198 NC_011094.1 208194 208634 D identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 208194..208634 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113199.1 CDS SeSA_A0199 NC_011094.1 208696 209925 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 208696..209925 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113200.1 CDS panD NC_011094.1 209932 210312 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(209932..210312) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113201.1 CDS panC NC_011094.1 210407 211261 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(210407..211261) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113202.1 CDS panB NC_011094.1 211387 212181 R 'catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate'; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(211387..212181) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113203.1 CDS SeSA_A0203 NC_011094.1 212303 213571 R identified by match to protein family HMM PF00419; fimbrial-like adhesin protein complement(212303..213571) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113204.1 CDS SeSA_A0204 NC_011094.1 213593 214156 R identified by match to protein family HMM PF00419; hypothetical protein complement(213593..214156) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113205.1 CDS SeSA_A0205 NC_011094.1 214189 214797 R fimbrial protein complement(214189..214797) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113206.1 CDS SeSA_A0206 NC_011094.1 214812 215336 R fimbrial protein complement(214812..215336) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113207.1 CDS SeSA_A0207 NC_011094.1 215365 218031 R similar to the fimbrial usher protein PapC; outer membrane usher protein complement(215365..218031) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113208.1 CDS SeSA_A0208 NC_011094.1 218031 218768 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein EcpD complement(218031..218768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113209.1 CDS SeSA_A0209 NC_011094.1 219034 219627 R identified by match to protein family HMM PF00419; pilin chaperone ecpD2 complement(219034..219627) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113210.1 CDS SeSA_A0210 NC_011094.1 219947 220060 D identified by glimmer; hypothetical protein 219947..220060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113211.1 CDS folK NC_011094.1 220030 220509 R 'catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP'; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(220030..220509) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113212.2 CDS pcnB NC_011094.1 220506 221924 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase complement(220506..221924) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113213.1 CDS SeSA_A0213 NC_011094.1 222065 223006 R 'this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu'; glutamyl-Q tRNA(Asp) synthetase complement(222065..223006) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113214.1 CDS dksA NC_011094.1 223030 223485 R identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor complement(223030..223485) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113215.1 CDS sfsA NC_011094.1 223662 224366 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(223662..224366) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113216.1 CDS SeSA_A0216 NC_011094.1 224383 224913 R identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase complement(224383..224913) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113217.1 CDS hrpB NC_011094.1 224941 227415 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 224941..227415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113218.1 CDS mrcB NC_011094.1 227556 230078 D 'bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell'; penicillin-binding protein 1b 227556..230078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113219.1 CDS SeSA_A0219 NC_011094.1 230217 230357 R identified by glimmer; hypothetical protein complement(230217..230357) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113220.1 CDS fhuA NC_011094.1 230371 232560 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 230371..232560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113221.1 CDS fhuC NC_011094.1 232609 233406 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 232609..233406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113222.1 CDS SeSA_A0222 NC_011094.1 233406 234296 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 233406..234296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113223.1 CDS SeSA_A0223 NC_011094.1 234293 236350 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 234293..236350 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113224.1 CDS hemL NC_011094.1 236441 237721 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(236441..237721) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113225.1 CDS SeSA_A0226 NC_011094.1 237891 239312 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 237891..239312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113226.1 CDS yadR NC_011094.1 239394 239738 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 239394..239738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113227.1 CDS SeSA_A0228 NC_011094.1 239839 240462 R identified by match to protein family HMM PF03458; hypothetical protein complement(239839..240462) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113228.1 CDS SeSA_A0229 NC_011094.1 240499 241287 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(240499..241287) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113229.1 CDS mtnN NC_011094.1 241292 241990 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(241292..241990) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113230.1 CDS dgt NC_011094.1 242075 243592 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 242075..243592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113231.1 CDS degP NC_011094.1 243722 245149 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 243722..245149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113232.1 CDS cdaR NC_011094.1 245302 246459 D 'regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization'; carbohydrate diacid transcriptional activator CdaR 245302..246459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113233.1 CDS SeSA_A0234 NC_011094.1 246581 249550 R identified by match to protein family HMM PF03272; viral enhancin protein complement(246581..249550) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113234.1 CDS SeSA_A0235 NC_011094.1 249736 250122 R hypothetical protein complement(249736..250122) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113235.1 CDS SeSA_A0236 NC_011094.1 250369 251670 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 250369..251670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113236.1 CDS dapD NC_011094.1 251707 252531 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(251707..252531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113237.1 CDS glnD NC_011094.1 252561 255233 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(252561..255233) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113238.1 CDS map NC_011094.1 255471 256265 R 'catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn'; methionine aminopeptidase complement(255471..256265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113239.1 CDS rpsB NC_011094.1 256716 257441 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 256716..257441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113240.1 CDS tsf NC_011094.1 257699 258550 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 257699..258550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113241.1 CDS pyrH NC_011094.1 258695 259420 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 258695..259420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113242.1 CDS frr NC_011094.1 259567 260124 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 259567..260124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113243.2 CDS dxr NC_011094.1 260266 261462 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 260266..261462 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113244.1 CDS uppS NC_011094.1 261775 262533 D catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 261775..262533 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113245.1 CDS cdsA NC_011094.1 262546 263403 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 262546..263403 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113246.1 CDS rseP NC_011094.1 263415 264767 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 263415..264767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113247.1 CDS yaeT NC_011094.1 264799 267231 D 'part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins'; outer membrane protein assembly factor YaeT 264799..267231 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113248.1 CDS skp NC_011094.1 267354 267839 D identified by match to protein family HMM PF03938; periplasmic chaperone 267354..267839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113249.1 CDS lpxD NC_011094.1 267843 268868 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 267843..268868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113250.1 CDS fabZ NC_011094.1 268974 269429 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 268974..269429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113251.1 CDS lpxA NC_011094.1 269433 270221 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 269433..270221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113252.1 CDS lpxB NC_011094.1 270221 271369 D 'catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM'; lipid-A-disaccharide synthase 270221..271369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113253.1 CDS rnhB NC_011094.1 271366 271962 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 271366..271962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113254.1 CDS dnaE NC_011094.1 271986 275468 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 271986..275468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113255.1 CDS accA NC_011094.1 275481 276440 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 275481..276440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113257.1 CDS SeSA_A0261 NC_011094.1 278445 280586 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 278445..280586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113258.1 CDS SeSA_A0262 NC_011094.1 280642 281031 D identified by match to protein family HMM PF00903; hypothetical protein 280642..281031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113259.1 CDS tilS NC_011094.1 281094 282386 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 281094..282386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113260.2 CDS rof NC_011094.1 282470 282730 R identified by match to protein family HMM PF07073; Rho-binding antiterminator complement(282470..282730) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113261.1 CDS SeSA_A0265 NC_011094.1 282717 282917 R identified by match to protein family HMM PF06786; hypothetical protein complement(282717..282917) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113262.1 CDS SeSA_A0266 NC_011094.1 283115 283660 D identified by match to protein family HMM PF07152; hypothetical protein 283115..283660 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113263.1 CDS SeSA_A0267 NC_011094.1 283657 284079 D identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 283657..284079 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113264.1 CDS SeSA_A0268 NC_011094.1 284111 284812 D identified by match to protein family HMM PF04170; copper homeostasis and adhesion lipoprotein 284111..284812 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113265.1 CDS proS NC_011094.1 284886 286604 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(284886..286604) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113266.1 CDS SeSA_A0270 NC_011094.1 286715 287455 R identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein complement(286715..287455) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113267.2 CDS rcsF NC_011094.1 287419 287823 R exopolysaccharide synthesis regulator RcsF complement(287419..287823) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113268.1 CDS metQ NC_011094.1 287942 288757 R identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit complement(287942..288757) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113269.1 CDS metI NC_011094.1 288796 289449 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(288796..289449) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113270.1 CDS metN NC_011094.1 289442 290473 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(289442..290473) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113271.1 CDS SeSA_A0275 NC_011094.1 290663 291229 D 'Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate'; D,D-heptose 1,7-bisphosphate phosphatase 290663..291229 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113272.1 CDS dkgB NC_011094.1 297054 297878 D 'catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid'; 2,5-diketo-D-gluconate reductase B 297054..297878 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113273.1 CDS SeSA_A0286 NC_011094.1 297900 298814 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(297900..298814) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113274.1 CDS SeSA_A0287 NC_011094.1 298919 300094 D identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 298919..300094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113275.1 CDS SeSA_A0288 NC_011094.1 300226 301026 D identified by match to protein family HMM PF03372; hypothetical protein 300226..301026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113276.1 CDS SeSA_A0289 NC_011094.1 301104 301874 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family protein 301104..301874 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113277.2 CDS mltD NC_011094.1 301930 303297 R 'catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall'; membrane-bound lytic murein transglycosylase D complement(301930..303297) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113278.1 CDS gloB NC_011094.1 303369 304124 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(303369..304124) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113279.1 CDS SeSA_A0292 NC_011094.1 304159 304881 D identified by match to protein family HMM PF08241; methyltransferase 304159..304881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113280.1 CDS rnhA NC_011094.1 304878 305345 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(304878..305345) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113281.1 CDS dnaQ NC_011094.1 305400 306140 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 305400..306140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113282.1 CDS SeSA_A0296 NC_011094.1 306670 307713 R identified by match to protein family HMM PF06812; ImpA-related N- family protein complement(306670..307713) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113283.1 CDS SeSA_A0297 NC_011094.1 307730 308725 R identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; type VI secretion protein, family protein complement(307730..308725) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113284.1 CDS vasA NC_011094.1 308722 310605 R identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; type VI secretion protein, family protein complement(308722..310605) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113285.1 CDS SeSA_A0299 NC_011094.1 310621 311115 R identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357; type VI secretion system lysozyme-like protein complement(310621..311115) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113286.1 CDS SeSA_A0300 NC_011094.1 311112 311936 R identified by match to protein family HMM PF07024; SciE protein complement(311112..311936) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113287.1 CDS SeSA_A0301 NC_011094.1 311923 312813 R hypothetical protein complement(311923..312813) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113288.1 CDS SeSA_A0302 NC_011094.1 312896 313033 R identified by glimmer; hypothetical protein complement(312896..313033) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113289.1 CDS clpV NC_011094.1 313193 315856 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; type VI secretion ATPase, ClpV1 family protein 313193..315856 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113290.1 CDS SeSA_A0304 NC_011094.1 315942 316232 D hypothetical protein 315942..316232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113291.1 CDS SeSA_A0305 NC_011094.1 316294 316836 D identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358; type VI secretion protein, family protein 316294..316836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113292.1 CDS SeSA_A0306 NC_011094.1 316860 318368 D identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355; type VI secretion protein, EvpB/family protein 316860..318368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113293.1 CDS SeSA_A0307 NC_011094.1 318720 319001 D hypothetical protein 318720..319001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113294.1 CDS SeSA_A0308 NC_011094.1 319255 319740 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 319255..319740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113295.1 CDS SeSA_A0309 NC_011094.1 320034 320519 D hypothetical protein 320034..320519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113296.1 CDS SeSA_A0310 NC_011094.1 320516 320887 D hypothetical protein 320516..320887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113297.1 CDS SeSA_A0311 NC_011094.1 321030 321515 D identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 321030..321515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113298.1 CDS SeSA_A0312 NC_011094.1 321627 322118 D identified by match to protein family HMM TIGR03352; type VI secretion lipoprotein, family protein 321627..322118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113299.1 CDS SeSA_A0313 NC_011094.1 322122 323465 D identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353; type VI secretion protein, family protein 322122..323465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113300.1 CDS SeSA_A0314 NC_011094.1 323462 324766 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350; hypothetical protein 323462..324766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113301.1 CDS SeSA_A0315 NC_011094.1 324771 325544 D hypothetical protein 324771..325544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113302.1 CDS icmF NC_011094.1 326189 330058 D identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348; type VI secretion protein IcmF 326189..330058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113303.1 CDS SeSA_A0319 NC_011094.1 330058 330840 D hypothetical protein 330058..330840 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113304.1 CDS SeSA_A0320 NC_011094.1 330837 331676 D hypothetical protein 330837..331676 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113305.1 CDS SeSA_A0321 NC_011094.1 331666 331926 D hypothetical protein 331666..331926 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113306.1 CDS SeSA_A0322 NC_011094.1 332051 334243 D identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361; Rhs-family protein 332051..334243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113307.1 CDS SeSA_A0323 NC_011094.1 334267 334713 D identified by match to protein family HMM PF08786; hypothetical protein 334267..334713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113308.1 CDS SeSA_A0325 NC_011094.1 338692 338826 D identified by glimmer; hypothetical protein 338692..338826 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113309.1 CDS SeSA_A0326 NC_011094.1 338804 339250 D hypothetical protein 338804..339250 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113310.1 CDS SeSA_A0327 NC_011094.1 339426 339566 D identified by glimmer; hypothetical protein 339426..339566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113311.1 CDS SeSA_A0328 NC_011094.1 339769 340251 D phosphotriesterase 339769..340251 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113312.1 CDS SeSA_A0332 NC_011094.1 341337 341516 R hypothetical protein complement(341337..341516) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113313.1 CDS SeSA_A0333 NC_011094.1 341784 341924 R hypothetical protein complement(341784..341924) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113314.1 CDS SeSA_A0335 NC_011094.1 343099 343224 D identified by glimmer; hypothetical protein 343099..343224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_003475885.1 CDS safA NC_011094.1 343169 343663 D spora coat assembly protein SafA 343169..343663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113316.1 CDS SeSA_A0337 NC_011094.1 343747 344484 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pilus assembly chaperone 343747..344484 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113317.1 CDS SeSA_A0338 NC_011094.1 344508 347018 D identified by match to protein family HMM PF00577; outer-membrane fimbrial usher protein 344508..347018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113318.1 CDS SeSA_A0339 NC_011094.1 347040 347510 D identified by match to protein family HMM PF05775; fimbrial structural subunit 347040..347510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113319.1 CDS SeSA_A0340 NC_011094.1 347917 348738 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 347917..348738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113320.1 CDS SeSA_A0341 NC_011094.1 349221 349352 D TnpA protein 349221..349352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113321.1 CDS SeSA_A0342 NC_011094.1 349555 350502 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR-family transcriptional regulator SinR 349555..350502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113322.1 CDS SeSA_A0345 NC_011094.1 352648 353358 D fimbrial protein 352648..353358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113323.1 CDS SeSA_A0346 NC_011094.1 353409 353984 D identified by match to protein family HMM PF04449; CS1 type fimbrial major subunit 353409..353984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113324.1 CDS SeSA_A0347 NC_011094.1 354093 356780 D TcfC protein 354093..356780 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113325.1 CDS SeSA_A0348 NC_011094.1 356802 357851 D identified by match to protein family HMM PF07434; fimbrial protein 356802..357851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113326.1 CDS SeSA_A0349 NC_011094.1 357984 358439 D identified by match to protein family HMM PF01037; transcriptional regulator 357984..358439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113327.1 CDS SeSA_A0351 NC_011094.1 358483 358602 R identified by glimmer; hypothetical protein complement(358483..358602) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113328.1 CDS SeSA_A0350 NC_011094.1 358579 359196 D hypothetical protein 358579..359196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113329.1 CDS SeSA_A0352 NC_011094.1 359575 359733 D identified by glimmer; hypothetical protein 359575..359733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113330.1 CDS SeSA_A0353 NC_011094.1 359962 360114 R hypothetical protein complement(359962..360114) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113331.1 CDS SeSA_A0354 NC_011094.1 360160 360879 R adhesin complement(360160..360879) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113332.1 CDS SeSA_A0355 NC_011094.1 361022 361210 R identified by glimmer; hypothetical protein complement(361022..361210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113333.1 CDS SeSA_A0356 NC_011094.1 361203 361610 R identified by match to protein family HMM PF07813; hypothetical protein complement(361203..361610) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113334.1 CDS SeSA_A0357 NC_011094.1 361920 362687 R identified by match to protein family HMM PF00795; hypothetical protein complement(361920..362687) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113335.1 CDS fadE NC_011094.1 362796 365240 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(362796..365240) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113336.1 CDS gmhA NC_011094.1 365479 366057 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 365479..366057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113337.1 CDS SeSA_A0360 NC_011094.1 366270 367037 D identified by match to protein family HMM PF00310; glutamine amidotransferase, class II 366270..367037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113338.1 CDS SeSA_A0361 NC_011094.1 367008 367748 R identified by match to protein family HMM PF06104; hypothetical protein complement(367008..367748) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113339.1 CDS SeSA_A0362 NC_011094.1 367998 369053 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 367998..369053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113340.1 CDS SeSA_A0363 NC_011094.1 369272 370411 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 369272..370411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113341.1 CDS prfH NC_011094.1 370408 371022 D similar to release factor 1 and 2; peptide chain release factor-like protein 370408..371022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113342.1 CDS pepD NC_011094.1 371178 372635 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(371178..372635) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113343.1 CDS gpt NC_011094.1 372884 373342 D 'catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively'; xanthine-guanine phosphoribosyltransferase 372884..373342 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113344.1 CDS frsA NC_011094.1 373431 374675 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 373431..374675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113345.1 CDS SeSA_A0368 NC_011094.1 374733 375134 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 374733..375134 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113346.1 CDS SeSA_A0369 NC_011094.1 375185 376237 R identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E complement(375185..376237) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113347.1 CDS SeSA_A0370 NC_011094.1 376303 376455 R hypothetical protein complement(376303..376455) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113348.1 CDS proB NC_011094.1 376520 377623 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 376520..377623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113349.1 CDS proA NC_011094.1 377635 378885 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 377635..378885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113350.1 CDS SeSA_A0374 NC_011094.1 379241 380431 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family protein 379241..380431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113351.1 CDS SeSA_A0375 NC_011094.1 380428 381252 D identified by glimmer; hypothetical protein 380428..381252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113352.1 CDS SeSA_A0376 NC_011094.1 381705 381839 R hypothetical protein complement(381705..381839) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113353.1 CDS SeSA_A0377 NC_011094.1 382009 382185 D phage immunity repressor protein 382009..382185 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113354.1 CDS SeSA_A0378 NC_011094.1 382178 382537 D identified by glimmer; hypothetical protein 382178..382537 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113355.1 CDS SeSA_A0379 NC_011094.1 382569 382853 D identified by glimmer; hypothetical protein 382569..382853 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113356.1 CDS SeSA_A0380 NC_011094.1 382850 383233 D hypothetical protein 382850..383233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113357.1 CDS SeSA_A0381 NC_011094.1 383230 385902 D identified by match to protein family HMM PF01751; match to protein family HMM PF08273; hypothetical protein 383230..385902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113358.1 CDS SeSA_A0382 NC_011094.1 385963 386181 R identified by glimmer; hypothetical protein complement(385963..386181) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113359.1 CDS SeSA_A0383 NC_011094.1 386302 387063 D capsid morphogenesis protein encoded in CP-933I 386302..387063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113360.1 CDS SeSA_A0384 NC_011094.1 387114 387335 D identified by match to protein family HMM PF04606; activator encoded in prophage CP-933I 387114..387335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113361.1 CDS SeSA_A0385 NC_011094.1 387522 387644 R identified by glimmer; hypothetical protein complement(387522..387644) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113362.1 CDS SeSA_A0386 NC_011094.1 387675 388658 D identified by match to protein family HMM PF00004; ATPase AAA 387675..388658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113363.1 CDS SeSA_A0387 NC_011094.1 388677 391121 D Y4bN protein 388677..391121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113364.1 CDS SeSA_A0388 NC_011094.1 391509 391703 D outer membrane protein 391509..391703 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113365.1 CDS SeSA_A0389 NC_011094.1 391751 392509 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein complement(391751..392509) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113366.1 CDS SeSA_A0390 NC_011094.1 392475 393800 R identified by match to protein family HMM PF00419; fimbrial usher complement(392475..393800) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113367.1 CDS SeSA_A0391 NC_011094.1 393805 396366 R identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein complement(393805..396366) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113368.2 CDS SeSA_A0392 NC_011094.1 396350 397111 R identified by match to protein family HMM PF00345; fimbrial chaperone protein complement(396350..397111) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_003494840.1 CDS stbA NC_011094.1 397173 397709 R fimbrial protein major subunit complement(397173..397709) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113370.1 CDS SeSA_A0394 NC_011094.1 398373 399107 D transmembrane regulator 398373..399107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113371.1 CDS SeSA_A0395 NC_011094.1 399080 399580 D hypothetical protein 399080..399580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113372.1 CDS SeSA_A0396 NC_011094.1 399917 401467 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 399917..401467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113373.1 CDS SeSA_A0397 NC_011094.1 401567 402310 D identified by match to protein family HMM PF00486; response regulator 401567..402310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113374.1 CDS SeSA_A0398 NC_011094.1 402283 402771 D hypothetical protein 402283..402771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113375.1 CDS SeSA_A0399 NC_011094.1 403173 403697 D identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 403173..403697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113376.1 CDS SeSA_A0400 NC_011094.1 403841 404482 D response regulator 403841..404482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113377.1 CDS SeSA_A0401 NC_011094.1 404493 404717 D hypothetical protein 404493..404717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113378.1 CDS SeSA_A0402 NC_011094.1 404751 405134 D cytochrome c type biogenesis protein CycH 404751..405134 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113379.1 CDS SeSA_A0403 NC_011094.1 405202 406659 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane protein OprM complement(405202..406659) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113380.1 CDS SeSA_A0404 NC_011094.1 406676 409843 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; OqxB complement(406676..409843) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113381.1 CDS SeSA_A0405 NC_011094.1 409840 411066 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; auxiliary transport protein, membrane fusion protein (MFP) family protein complement(409840..411066) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113382.1 CDS SeSA_A0406 NC_011094.1 411343 413631 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 411343..413631 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113383.1 CDS cueR NC_011094.1 413643 414107 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 413643..414107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113384.1 CDS SeSA_A0408 NC_011094.1 414185 414379 D identified by match to protein family HMM PF00403; hypothetical protein 414185..414379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113385.1 CDS SeSA_A0409 NC_011094.1 414671 415924 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 414671..415924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113386.1 CDS SeSA_A0410 NC_011094.1 416113 418071 D identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 416113..418071 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113387.1 CDS SeSA_A0411 NC_011094.1 418084 421053 D identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 418084..421053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113388.1 CDS SeSA_A0412 NC_011094.1 421548 422951 D identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 421548..422951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113389.1 CDS cydB NC_011094.1 422948 423958 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 422948..423958 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113390.1 CDS SeSA_A0414 NC_011094.1 423958 424089 D hypothetical protein 423958..424089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113391.1 CDS SeSA_A0415 NC_011094.1 424296 425300 D identified by match to protein family HMM PF00165; araC family transcriptional regulator 424296..425300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113392.1 CDS SeSA_A0416 NC_011094.1 425464 427554 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 425464..427554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113393.1 CDS SeSA_A0417 NC_011094.1 427595 428227 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transporter complement(427595..428227) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113394.1 CDS SeSA_A0418 NC_011094.1 428459 428734 D identified by match to protein family HMM PF07338; hypothetical protein 428459..428734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113395.1 CDS prpR NC_011094.1 428870 430495 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329; propionate catabolism operon regulatory protein PrpR complement(428870..430495) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113396.1 CDS prpB NC_011094.1 430761 431648 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 430761..431648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113397.1 CDS prpC NC_011094.1 431759 432928 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 431759..432928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113398.1 CDS prpD NC_011094.1 432968 434419 D 'functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C'; 2-methylcitrate dehydratase 432968..434419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113399.1 CDS prpE NC_011094.1 434460 436346 D 'catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent'; propionyl-CoA synthetase 434460..436346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113400.1 CDS hemB NC_011094.1 436450 437424 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(436450..437424) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113401.1 CDS SeSA_A0425 NC_011094.1 437644 437757 D identified by glimmer; hypothetical protein 437644..437757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113402.1 CDS SeSA_A0426 NC_011094.1 437754 437870 R identified by glimmer; hypothetical protein complement(437754..437870) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113403.1 CDS SeSA_A0427 NC_011094.1 437937 440948 D identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter/pertactin 437937..440948 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119761.1 CDS SeSA_A0428 NC_011094.1 441034 441657 D transcriptional regulator 441034..441657 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113404.1 CDS SeSA_A0429 NC_011094.1 441702 442859 R this protein has no known enzymatic function; beta-lactam binding protein AmpH complement(441702..442859) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113405.1 CDS smbA NC_011094.1 443206 444426 D 'in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope'; transporter 443206..444426 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113406.1 CDS SeSA_A0431 NC_011094.1 444441 445535 D identified by match to protein family HMM PF07759; outer membrane lipoprotein 444441..445535 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113407.1 CDS SeSA_A0432 NC_011094.1 445573 445881 R hypothetical protein complement(445573..445881) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113408.1 CDS SeSA_A0433 NC_011094.1 446149 446364 D hypothetical protein 446149..446364 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113409.1 CDS ddl NC_011094.1 446390 447484 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(446390..447484) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113410.1 CDS SeSA_A0435 NC_011094.1 447592 448275 D identified by match to protein family HMM PF06904; extensin family protein 447592..448275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113411.1 CDS SeSA_A0436 NC_011094.1 448444 449655 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 448444..449655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113412.1 CDS SeSA_A0437 NC_011094.1 449952 450212 D hypothetical protein 449952..450212 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113413.1 CDS SeSA_A0438 NC_011094.1 450219 450398 R identified by glimmer; hypothetical protein complement(450219..450398) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113414.1 CDS SeSA_A0439 NC_011094.1 450565 450885 D identified by match to protein family HMM PF07769; hypothetical protein 450565..450885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113415.1 CDS adrA NC_011094.1 450977 452089 D 'catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis'; diguanylate cyclase AdrA 450977..452089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113416.1 CDS proC NC_011094.1 452104 452913 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(452104..452913) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113417.1 CDS SeSA_A0442 NC_011094.1 452947 453096 D identified by glimmer; hypothetical protein 452947..453096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113418.1 CDS SeSA_A0443 NC_011094.1 453053 453508 D identified by match to protein family HMM PF02639; hypothetical protein 453053..453508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113419.1 CDS aroL NC_011094.1 453693 454238 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 453693..454238 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113420.1 CDS SeSA_A0445 NC_011094.1 454265 454456 D hypothetical protein 454265..454456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113421.1 CDS SeSA_A0446 NC_011094.1 454707 455384 D identified by match to protein family HMM PF07302; hypothetical protein 454707..455384 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113422.1 CDS SeSA_A0447 NC_011094.1 455455 455739 D identified by match to protein family HMM PF06865; hypothetical protein 455455..455739 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113423.1 CDS rdgC NC_011094.1 455777 456688 R Required for efficient pilin antigenic variation; recombination associated protein complement(455777..456688) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113424.1 CDS SeSA_A0449 NC_011094.1 456814 457722 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 456814..457722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113425.1 CDS SeSA_A0450 NC_011094.1 457742 458968 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ complement(457742..458968) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113426.1 CDS SeSA_A0451 NC_011094.1 459087 462227 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC complement(459087..462227) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113427.1 CDS SeSA_A0452 NC_011094.1 462224 463426 R 'with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity'; exonuclease SbcD complement(462224..463426) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113428.1 CDS phoB NC_011094.1 463641 464330 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 463641..464330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113429.1 CDS phoR NC_011094.1 464400 465695 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 464400..465695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113430.1 CDS SeSA_A0456 NC_011094.1 465908 466057 R hypothetical protein complement(465908..466057) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113431.1 CDS brnQ NC_011094.1 466104 467423 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 466104..467423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113432.1 CDS proY NC_011094.1 467438 468868 D 'cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation'; proline-specific permease 467438..468868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113433.1 CDS SeSA_A0459 NC_011094.1 469030 470847 D identified by match to protein family HMM PF00128; maltodextrin glucosidase 469030..470847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113434.1 CDS SeSA_A0460 NC_011094.1 470919 471521 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 complement(470919..471521) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113435.1 CDS acpH NC_011094.1 471731 472312 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase complement(471731..472312) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113436.1 CDS queA NC_011094.1 472406 473470 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 472406..473470 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113437.1 CDS SeSA_A0463 NC_011094.1 473457 473603 D hypothetical protein 473457..473603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113438.1 CDS tgt NC_011094.1 473667 474794 D 'Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)'; queuine tRNA-ribosyltransferase 473667..474794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113439.1 CDS yajC NC_011094.1 474817 475149 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 474817..475149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113440.1 CDS secD NC_011094.1 475177 477024 D 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane'; preprotein translocase subunit SecD 475177..477024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113441.1 CDS secF NC_011094.1 477035 478006 D 'forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF'; preprotein translocase subunit SecF 477035..478006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113443.1 CDS SeSA_A0468 NC_011094.1 478100 478447 D identified by match to protein family HMM PF01844; hypothetical protein 478100..478447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113444.1 CDS SeSA_A0471 NC_011094.1 479076 479939 R identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx complement(479076..479939) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113445.1 CDS SeSA_A0472 NC_011094.1 480127 480264 R identified by glimmer; hypothetical protein complement(480127..480264) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113446.1 CDS SeSA_A0473 NC_011094.1 480239 480736 R hypothetical protein complement(480239..480736) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113447.1 CDS SeSA_A0474 NC_011094.1 480811 480957 D identified by glimmer; hypothetical protein 480811..480957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113448.1 CDS nrdR NC_011094.1 480930 481379 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 480930..481379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113449.1 CDS ribD NC_011094.1 481383 482486 D 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil'; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 481383..482486 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113450.1 CDS ribH NC_011094.1 482575 483045 D 'RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not'; 6,7-dimethyl-8-ribityllumazine synthase 482575..483045 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113451.1 CDS nusB NC_011094.1 483066 483485 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 483066..483485 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113452.1 CDS thiL NC_011094.1 483564 484541 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 483564..484541 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113453.1 CDS pgpA NC_011094.1 484528 485034 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 484528..485034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113454.1 CDS SeSA_A0481 NC_011094.1 485138 486112 R identified by match to protein family HMM PF00248; aryl-alcohol dehydrogenase W complement(485138..486112) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113455.1 CDS dxs NC_011094.1 486169 488031 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(486169..488031) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113456.1 CDS ispA NC_011094.1 488055 488954 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(488055..488954) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113457.1 CDS xseB NC_011094.1 488955 489197 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(488955..489197) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113458.1 CDS thiI NC_011094.1 489407 490855 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 489407..490855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113459.1 CDS phnV NC_011094.1 490899 491696 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transporter membrane protein PhnV complement(490899..491696) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113460.1 CDS phnU NC_011094.1 491699 492559 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease complement(491699..492559) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113461.1 CDS phnT NC_011094.1 492562 493671 R identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein complement(492562..493671) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113462.1 CDS phnS NC_011094.1 493677 494690 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(493677..494690) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113463.1 CDS SeSA_A0490 NC_011094.1 494888 495607 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR03337; transcriptional regulator complement(494888..495607) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113464.1 CDS phnW NC_011094.1 495747 496850 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 495747..496850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113465.1 CDS phnX NC_011094.1 496860 497669 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 496860..497669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113466.1 CDS SeSA_A0493 NC_011094.1 497766 498356 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein complement(497766..498356) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113467.1 CDS panE NC_011094.1 498319 499230 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(498319..499230) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113468.1 CDS SeSA_A0495 NC_011094.1 499356 499847 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 499356..499847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113469.1 CDS SeSA_A0496 NC_011094.1 499894 501258 R identified by match to protein family HMM PF07690; inner membrane transport protein YajR complement(499894..501258) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113470.1 CDS cyoE NC_011094.1 501479 502366 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(501479..502366) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113471.1 CDS cyoD NC_011094.1 502381 502710 R identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV complement(502381..502710) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113472.1 CDS cyoC NC_011094.1 502710 503324 R identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III complement(502710..503324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113473.1 CDS cyoB NC_011094.1 503314 505305 R identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I complement(503314..505305) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113474.1 CDS cyoA NC_011094.1 505316 506272 R identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II complement(505316..506272) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113475.1 CDS SeSA_A0502 NC_011094.1 506519 506641 R identified by glimmer; hypothetical protein complement(506519..506641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113476.1 CDS ampG NC_011094.1 506725 508200 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(506725..508200) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119762.1 CDS SeSA_A0504 NC_011094.1 508244 508876 R hypothetical protein complement(508244..508876) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113477.1 CDS SeSA_A0505 NC_011094.1 509126 509443 D 'positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress'; transcriptional regulator BolA 509126..509443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113478.1 CDS tig NC_011094.1 509790 511088 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 509790..511088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113479.1 CDS clpP NC_011094.1 511335 511958 D 'hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates'; ATP-dependent Clp protease proteolytic subunit 511335..511958 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113480.1 CDS clpX NC_011094.1 512209 513480 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 512209..513480 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113481.1 CDS lon NC_011094.1 513666 516020 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 513666..516020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113482.1 CDS hupB NC_011094.1 516229 516501 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 516229..516501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113483.1 CDS ppiD NC_011094.1 516792 518663 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 516792..518663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113484.1 CDS SeSA_A0512 NC_011094.1 518813 519187 D identified by match to protein family HMM TIGR00426; competence protein ComEA 518813..519187 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113485.1 CDS SeSA_A0513 NC_011094.1 519291 519689 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 519291..519689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113486.1 CDS SeSA_A0514 NC_011094.1 519797 520492 R 'YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His'; queuosine biosynthesis protein QueC complement(519797..520492) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113487.1 CDS SeSA_A0515 NC_011094.1 520557 522257 R identified by match to protein family HMM PF00496; extracellular solute-binding protein, family 5 complement(520557..522257) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113488.1 CDS SeSA_A0516 NC_011094.1 522357 523175 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; protein cof 522357..523175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113489.1 CDS SeSA_A0517 NC_011094.1 523224 524279 R identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent protein subunit beta complement(523224..524279) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113490.1 CDS SeSA_A0518 NC_011094.1 524392 524850 D identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 524392..524850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113491.1 CDS SeSA_A0519 NC_011094.1 524891 526663 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 524891..526663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113492.1 CDS SeSA_A0520 NC_011094.1 526656 528437 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 526656..528437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113493.1 CDS SeSA_A0521 NC_011094.1 528441 528599 D hypothetical protein 528441..528599 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113494.1 CDS SeSA_A0522 NC_011094.1 528650 528988 D 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.'; nitrogen regulatory protein P-II 2 528650..528988 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113495.1 CDS amt NC_011094.1 529020 530306 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 529020..530306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113496.1 CDS tesB NC_011094.1 530408 531268 R identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase complement(530408..531268) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113497.1 CDS SeSA_A0525 NC_011094.1 531483 532052 D lipoprotein 531483..532052 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113498.1 CDS SeSA_A0526 NC_011094.1 532085 532474 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase complement(532085..532474) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113499.1 CDS SeSA_A0528 NC_011094.1 532705 534255 R identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein complement(532705..534255) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113500.1 CDS rpmE2 NC_011094.1 534480 534740 D 'RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 534480..534740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113501.1 CDS rpmJ NC_011094.1 534746 534886 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 534746..534886 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113502.1 CDS SeSA_A0531 NC_011094.1 534942 535412 R hypothetical protein complement(534942..535412) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113503.1 CDS SeSA_A0532 NC_011094.1 535530 536081 R identified by match to protein family HMM PF00132; maltose O-acetyltransferase complement(535530..536081) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113504.1 CDS SeSA_A0533 NC_011094.1 536260 536478 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(536260..536478) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113505.1 CDS SeSA_A0534 NC_011094.1 536506 536880 R hypothetical protein complement(536506..536880) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113506.1 CDS SeSA_A0535 NC_011094.1 537376 540525 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B complement(537376..540525) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113507.1 CDS acrA NC_011094.1 540548 541741 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A complement(540548..541741) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113508.1 CDS acrR NC_011094.1 541883 542536 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 541883..542536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113509.1 CDS SeSA_A0538 NC_011094.1 542661 546017 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 542661..546017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113510.1 CDS SeSA_A0539 NC_011094.1 546059 546994 R identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein complement(546059..546994) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113511.1 CDS SeSA_A0540 NC_011094.1 547064 547231 R hypothetical protein complement(547064..547231) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113512.1 CDS SeSA_A0541 NC_011094.1 547245 547772 R 'PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks'; primosomal replication protein N'' complement(547245..547772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113513.1 CDS SeSA_A0542 NC_011094.1 547841 548218 D identified by match to protein family HMM PF04304; hypothetical protein 547841..548218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113514.1 CDS apt NC_011094.1 548371 548922 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 548371..548922 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113515.1 CDS dnaX NC_011094.1 549036 550964 D 'catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA'; DNA polymerase III subunits gamma and tau 549036..550964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113516.1 CDS SeSA_A0546 NC_011094.1 551010 551339 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 551010..551339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113517.1 CDS recR NC_011094.1 551339 551944 D 'involved in a recombinational process of DNA repair, independent of the recBC complex'; recombination protein RecR 551339..551944 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113518.1 CDS htpG NC_011094.1 552055 553929 D molecular chaperone; heat shock protein 90 552055..553929 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113519.1 CDS adk NC_011094.1 554281 554925 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 554281..554925 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113520.1 CDS hemH NC_011094.1 555153 556115 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 555153..556115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113521.1 CDS SeSA_A0552 NC_011094.1 556112 557083 R identified by match to protein family HMM PF07859; acetyl esterase complement(556112..557083) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113522.1 CDS gsk NC_011094.1 557236 558540 D identified by match to protein family HMM PF00294; inosine kinase 557236..558540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113523.1 CDS SeSA_A0554 NC_011094.1 558589 560265 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein complement(558589..560265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113524.1 CDS SeSA_A0555 NC_011094.1 560343 560468 D identified by glimmer; hypothetical protein 560343..560468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113525.1 CDS fsr NC_011094.1 560480 561700 R identified by match to protein family HMM PF07690; fosmidomycin resistance protein complement(560480..561700) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113526.1 CDS ushA NC_011094.1 561873 563525 D 'catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides'; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 561873..563525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113527.1 CDS ybaK NC_011094.1 563642 564121 R identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein complement(563642..564121) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113528.1 CDS SeSA_A0560 NC_011094.1 564323 565117 R identified by match to protein family HMM PF07446; GumN family protein complement(564323..565117) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113529.1 CDS SeSA_A0561 NC_011094.1 565194 566030 R hypothetical protein complement(565194..566030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113530.1 CDS copA NC_011094.1 566183 568684 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase complement(566183..568684) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113531.1 CDS cueR NC_011094.1 568794 569210 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 568794..569210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113532.1 CDS SeSA_A0564 NC_011094.1 569211 569663 R identified by match to protein family HMM PF01957; hypothetical protein complement(569211..569663) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113533.1 CDS SeSA_A0565 NC_011094.1 569660 570577 R identified by match to protein family HMM PF01145; hypothetical protein complement(569660..570577) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113534.1 CDS SeSA_A0566 NC_011094.1 570724 571401 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 570724..571401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113535.1 CDS SeSA_A0567 NC_011094.1 571388 572167 D identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 571388..572167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113536.1 CDS SeSA_A0568 NC_011094.1 572253 573134 R identified by match to protein family HMM PF00085; thioredoxin domain-containing protein complement(572253..573134) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113537.1 CDS SeSA_A0569 NC_011094.1 573167 573937 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase complement(573167..573937) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113538.1 CDS SeSA_A0571 NC_011094.1 574092 574706 R identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(574092..574706) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113539.1 CDS SeSA_A0570 NC_011094.1 574677 575363 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 574677..575363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113540.1 CDS SeSA_A0572 NC_011094.1 575360 577774 D identified by match to protein family HMM PF02687; efflux ABC transporter permease 575360..577774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113541.1 CDS SeSA_A0573 NC_011094.1 577960 579093 D outer membrane protein 577960..579093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113542.1 CDS SeSA_A0574 NC_011094.1 579350 580180 D identified by match to protein family HMM PF03180; lipoprotein 579350..580180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113543.1 CDS SeSA_A0575 NC_011094.1 580217 581233 D identified by match to protein family HMM PF00005; match to protein family HMM PF09383; methionine import ATP-binding protein MetN 2 580217..581233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113544.1 CDS SeSA_A0576 NC_011094.1 581226 581885 D identified by match to protein family HMM PF00528; ABC transporter 581226..581885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113545.1 CDS ybbB NC_011094.1 581924 583009 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(581924..583009) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113546.1 CDS purK NC_011094.1 583105 584172 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(583105..584172) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113547.1 CDS purE NC_011094.1 584169 584678 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(584169..584678) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113548.1 CDS lpxH NC_011094.1 584796 585518 R 'catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine'; UDP-2,3-diacylglucosamine hydrolase complement(584796..585518) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113549.1 CDS ppiB NC_011094.1 585521 586015 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(585521..586015) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113550.1 CDS cysS NC_011094.1 586188 587573 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 586188..587573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113551.1 CDS SeSA_A0583 NC_011094.1 587617 588441 R outer membrane protein complement(587617..588441) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113552.1 CDS SeSA_A0584 NC_011094.1 588438 588875 R hypothetical protein complement(588438..588875) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113553.1 CDS SeSA_A0585 NC_011094.1 588868 589413 R identified by match to protein family HMM PF04307; hypothetical protein complement(588868..589413) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113554.1 CDS SeSA_A0586 NC_011094.1 589541 589753 R hypothetical protein complement(589541..589753) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113555.1 CDS folD NC_011094.1 589755 590621 R 'catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate'; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(589755..590621) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113556.1 CDS SeSA_A0588 NC_011094.1 591168 591725 D identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 591168..591725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113557.1 CDS SeSA_A0589 NC_011094.1 591839 592333 D identified by match to protein family HMM PF00419; fimbrial protein 591839..592333 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113558.1 CDS SeSA_A0590 NC_011094.1 592377 593069 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 592377..593069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113559.1 CDS SeSA_A0591 NC_011094.1 593100 595712 D identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 593100..595712 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113560.1 CDS SeSA_A0592 NC_011094.1 595727 596734 D mannose binding protein FimH 595727..596734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113561.1 CDS SeSA_A0593 NC_011094.1 596744 597262 D identified by match to protein family HMM PF00419; fimbrial protein 596744..597262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113562.1 CDS SeSA_A0594 NC_011094.1 597308 597940 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(597308..597940) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113563.1 CDS SeSA_A0595 NC_011094.1 598544 599266 R fimbriae Y protein complement(598544..599266) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113564.1 CDS SeSA_A0596 NC_011094.1 599285 599593 R hypothetical protein complement(599285..599593) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113565.1 CDS SeSA_A0598 NC_011094.1 599758 600354 R fimbriae W protein complement(599758..600354) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113566.1 CDS SeSA_A0597 NC_011094.1 600310 600546 D hypothetical protein 600310..600546 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113567.1 CDS SeSA_A0600 NC_011094.1 600701 601864 R identified by match to protein family HMM PF00589; prophage DLP12 integrase complement(600701..601864) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113568.1 CDS SeSA_A0601 NC_011094.1 602303 602980 R identified by match to protein family HMM PF04448; valyl-tRNA synthetase complement(602303..602980) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113569.1 CDS SeSA_A0602 NC_011094.1 602977 603219 R identified by glimmer; hypothetical protein complement(602977..603219) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113570.1 CDS SeSA_A0603 NC_011094.1 603328 603600 R hypothetical protein complement(603328..603600) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113571.1 CDS SeSA_A0604 NC_011094.1 603638 603814 R identified by glimmer; hypothetical protein complement(603638..603814) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113572.1 CDS SeSA_A0606 NC_011094.1 603941 604384 R hypothetical protein complement(603941..604384) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113573.1 CDS SeSA_A0605 NC_011094.1 604383 604538 D identified by glimmer; hypothetical protein 604383..604538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113574.1 CDS SeSA_A0607 NC_011094.1 604550 605047 R Eae protein complement(604550..605047) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113575.1 CDS SeSA_A0608 NC_011094.1 605044 605208 R hypothetical protein complement(605044..605208) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113576.1 CDS SeSA_A0609 NC_011094.1 605219 605512 R anti-RecBCD protein 2 complement(605219..605512) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113577.1 CDS SeSA_A0610 NC_011094.1 605536 605919 R Gp40 complement(605536..605919) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113578.1 CDS SeSA_A0611 NC_011094.1 605919 606056 R essential recombination function protein Erf complement(605919..606056) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113579.1 CDS SeSA_A0612 NC_011094.1 606781 606933 R hypothetical protein complement(606781..606933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113580.1 CDS SeSA_A0613 NC_011094.1 607074 608042 R identified by glimmer; hypothetical protein complement(607074..608042) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113581.1 CDS SeSA_A0614 NC_011094.1 608225 608695 R identified by glimmer; hypothetical protein complement(608225..608695) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113582.1 CDS SeSA_A0615 NC_011094.1 608970 609110 D identified by glimmer; hypothetical protein 608970..609110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113583.1 CDS SeSA_A0616 NC_011094.1 609841 609957 D identified by glimmer; hypothetical protein 609841..609957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113584.1 CDS SeSA_A0617 NC_011094.1 610406 610621 D identified by match to protein family HMM PF01381; hypothetical protein 610406..610621 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113585.1 CDS SeSA_A0618 NC_011094.1 610894 611013 D transcriptional activator-regulatory protein 610894..611013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113586.1 CDS SeSA_A0619 NC_011094.1 611048 611194 D hypothetical protein 611048..611194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113587.1 CDS SeSA_A0620 NC_011094.1 611187 612047 D identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gp59 611187..612047 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113588.1 CDS SeSA_A0621 NC_011094.1 612203 614035 D gp61 612203..614035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113589.1 CDS SeSA_A0622 NC_011094.1 614186 614314 D gp62 614186..614314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113590.1 CDS SeSA_A0623 NC_011094.1 614332 614481 R identified by glimmer; hypothetical protein complement(614332..614481) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113591.1 CDS SeSA_A0624 NC_011094.1 615183 615311 D hypothetical protein 615183..615311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113592.1 CDS SeSA_A0625 NC_011094.1 615786 615962 D Rus 615786..615962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113593.1 CDS SeSA_A0626 NC_011094.1 616143 616322 D hypothetical protein 616143..616322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113594.1 CDS SeSA_A0627 NC_011094.1 617622 617747 D hypothetical protein 617622..617747 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113595.1 CDS SeSA_A0628 NC_011094.1 617971 618243 D bacteriophage protein 617971..618243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113596.1 CDS SeSA_A0629 NC_011094.1 618243 618740 D identified by match to protein family HMM PF00959; phage lysozyme 618243..618740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113597.1 CDS SeSA_A0630 NC_011094.1 619506 620003 D identified by match to protein family HMM PF04383; KilA-N domain family protein 619506..620003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113598.1 CDS SeSA_A0631 NC_011094.1 620075 620257 D bacteriophage protein 620075..620257 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113599.1 CDS SeSA_A0632 NC_011094.1 620826 621083 D gp1 620826..621083 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113600.1 CDS SeSA_A0633 NC_011094.1 621067 622386 D identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; phage terminase, large subunit, pbsx family protein 621067..622386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113601.1 CDS SeSA_A0634 NC_011094.1 622456 623871 D gp5 622456..623871 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113602.1 CDS SeSA_A0635 NC_011094.1 623825 624784 D identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; gp6 623825..624784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113603.1 CDS SeSA_A0636 NC_011094.1 624800 626062 D gp7 624800..626062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113604.1 CDS SeSA_A0637 NC_011094.1 626075 626524 D gp8 626075..626524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113605.1 CDS SeSA_A0638 NC_011094.1 626542 627618 D gp9 626542..627618 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113606.1 CDS SeSA_A0639 NC_011094.1 627628 627807 D hypothetical protein 627628..627807 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113607.1 CDS SeSA_A0641 NC_011094.1 628135 628266 R identified by glimmer; hypothetical protein complement(628135..628266) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113608.1 CDS SeSA_A0640 NC_011094.1 628260 628439 D hypothetical protein 628260..628439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113609.1 CDS SeSA_A0642 NC_011094.1 628432 628794 D gp13 628432..628794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113610.1 CDS SeSA_A0643 NC_011094.1 628882 629319 D identified by glimmer; hypothetical protein 628882..629319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113611.1 CDS SeSA_A0644 NC_011094.1 629316 629702 D gp15 629316..629702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113612.1 CDS SeSA_A0645 NC_011094.1 629720 630460 D identified by match to protein family HMM PF07679; gp16 629720..630460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113613.1 CDS SeSA_A0646 NC_011094.1 630505 631158 D gp17 630505..631158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119763.1 CDS SeSA_A0647 NC_011094.1 631380 632108 D hypothetical protein 631380..632108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113614.1 CDS SeSA_A0648 NC_011094.1 632130 632501 R identified by glimmer; hypothetical protein complement(632130..632501) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113615.1 CDS SeSA_A0649 NC_011094.1 632542 632679 D identified by glimmer; hypothetical protein 632542..632679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113616.1 CDS SeSA_A0650 NC_011094.1 632700 632822 R identified by glimmer; hypothetical protein complement(632700..632822) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113617.1 CDS SeSA_A0651 NC_011094.1 633137 633310 D identified by glimmer; hypothetical protein 633137..633310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113618.1 CDS SeSA_A0652 NC_011094.1 633384 634022 D hypothetical protein 633384..634022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113619.1 CDS SeSA_A0653 NC_011094.1 634102 634890 D hypothetical protein 634102..634890 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113620.1 CDS SeSA_A0654 NC_011094.1 636160 636477 D hypothetical protein 636160..636477 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113621.1 CDS SeSA_A0655 NC_011094.1 636599 637453 R identified by match to protein family HMM PF04383; KilA, N- domain-containing protein complement(636599..637453) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113622.1 CDS SeSA_A0656 NC_011094.1 637763 638176 D hypothetical protein 637763..638176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113623.1 CDS SeSA_A0657 NC_011094.1 638552 641722 D identified by match to protein family HMM TIGR02675; gp21 638552..641722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113624.1 CDS SeSA_A0658 NC_011094.1 641747 641863 R identified by glimmer; hypothetical protein complement(641747..641863) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113625.1 CDS SeSA_A0660 NC_011094.1 641944 642084 R identified by glimmer; hypothetical protein complement(641944..642084) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113626.1 CDS SeSA_A0659 NC_011094.1 642072 642419 D identified by match to protein family HMM PF05939; phage minor tail protein 642072..642419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113627.1 CDS SeSA_A0661 NC_011094.1 642455 643159 D identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 642455..643159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113628.1 CDS SeSA_A0662 NC_011094.1 643848 644012 R identified by glimmer; hypothetical protein complement(643848..644012) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113629.1 CDS SeSA_A0663 NC_011094.1 644358 647537 D identified by match to protein family HMM PF09327; gp29 644358..647537 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113630.1 CDS SeSA_A0664 NC_011094.1 647546 648505 D hypothetical protein 647546..648505 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113631.1 CDS SeSA_A0665 NC_011094.1 648516 649652 D identified by glimmer; hypothetical protein 648516..649652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113632.1 CDS SeSA_A0666 NC_011094.1 650260 651447 D identified by match to protein family HMM PF00589; integrase 650260..651447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113633.1 CDS SeSA_A0667 NC_011094.1 651947 652093 D identified by glimmer; hypothetical protein 651947..652093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113634.1 CDS SeSA_A0668 NC_011094.1 652744 652941 D identified by match to protein family HMM PF05930; hypothetical protein 652744..652941 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113635.1 CDS SeSA_A0669 NC_011094.1 653043 653639 D hypothetical protein 653043..653639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113636.1 CDS SeSA_A0671 NC_011094.1 654525 654686 D identified by glimmer; hypothetical protein 654525..654686 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113637.1 CDS SeSA_A0672 NC_011094.1 654796 654960 R identified by glimmer; hypothetical protein complement(654796..654960) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113639.1 CDS SeSA_A0675 NC_011094.1 655441 655761 D Ant2 655441..655761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113640.1 CDS SeSA_A0676 NC_011094.1 655772 656566 D hypothetical protein 655772..656566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113641.1 CDS SeSA_A0677 NC_011094.1 656563 656868 D identified by glimmer; hypothetical protein 656563..656868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113642.1 CDS SeSA_A0678 NC_011094.1 656958 657341 D identified by glimmer; hypothetical protein 656958..657341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113643.1 CDS SeSA_A0679 NC_011094.1 657334 657981 D hypothetical protein 657334..657981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113644.1 CDS SeSA_A0680 NC_011094.1 657991 660132 D P4 alpha zinc-binding domain-containing protein 657991..660132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113645.1 CDS SeSA_A0681 NC_011094.1 660129 660524 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; ssDNA-binding protein 660129..660524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113646.1 CDS SeSA_A0682 NC_011094.1 660568 661482 D hypothetical protein 660568..661482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113647.1 CDS SeSA_A0683 NC_011094.1 661576 662379 D identified by match to protein family HMM PF03589; gp23 661576..662379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113648.1 CDS SeSA_A0684 NC_011094.1 662495 662962 R hypothetical protein complement(662495..662962) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113649.1 CDS SeSA_A0685 NC_011094.1 664203 664547 D identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family protein 664203..664547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113650.1 CDS SeSA_A0686 NC_011094.1 664550 665164 D lytic enzyme 664550..665164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113651.1 CDS SeSA_A0687 NC_011094.1 665161 665697 D protein gp55 665161..665697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113652.1 CDS SeSA_A0688 NC_011094.1 665694 665945 D identified by glimmer; hypothetical protein 665694..665945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113653.1 CDS SeSA_A0689 NC_011094.1 666021 666554 D identified by glimmer; hypothetical protein 666021..666554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113654.1 CDS SeSA_A0690 NC_011094.1 666897 667043 R identified by glimmer; hypothetical protein complement(666897..667043) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113655.1 CDS SeSA_A0691 NC_011094.1 667212 667709 D identified by match to protein family HMM PF07278; hypothetical protein 667212..667709 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113656.1 CDS SeSA_A0692 NC_011094.1 667681 669810 D identified by match to protein family HMM PF05876; phage terminase large subunit 667681..669810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113657.1 CDS SeSA_A0693 NC_011094.1 669807 670013 D hypothetical protein 669807..670013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113658.1 CDS SeSA_A0694 NC_011094.1 670010 671545 D identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein, lambda family protein 670010..671545 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113659.1 CDS SeSA_A0695 NC_011094.1 671508 673577 D identified by match to protein family HMM PF00574; ATP-dependent protease 671508..673577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113660.1 CDS SeSA_A0696 NC_011094.1 673666 673989 D hypothetical protein 673666..673989 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113661.1 CDS SeSA_A0697 NC_011094.1 673982 674257 D hypothetical protein 673982..674257 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113662.1 CDS SeSA_A0698 NC_011094.1 674261 674845 D identified by match to protein family HMM PF06763; prophage minor tail protein Z 674261..674845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113663.1 CDS SeSA_A0699 NC_011094.1 674842 675243 D identified by match to protein family HMM PF06141; phage minor tail protein U 674842..675243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113664.1 CDS SeSA_A0700 NC_011094.1 675254 675997 D identified by match to protein family HMM PF02368; gifsy-1 prophage VmtV 675254..675997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113665.1 CDS SeSA_A0701 NC_011094.1 676048 676443 D identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 676048..676443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113666.1 CDS SeSA_A0702 NC_011094.1 676506 676778 D identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 676506..676778 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113667.1 CDS SeSA_A0703 NC_011094.1 676750 679845 D identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 676750..679845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113668.1 CDS SeSA_A0704 NC_011094.1 679848 680177 D identified by match to protein family HMM PF05939; phage minor tail protein 679848..680177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113669.1 CDS SeSA_A0705 NC_011094.1 680187 680885 D identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 680187..680885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119764.1 CDS SeSA_A0706 NC_011094.1 680892 681629 D tail assembly protein K 680892..681629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113670.1 CDS SeSA_A0707 NC_011094.1 681668 682174 D identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 681668..682174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113671.1 CDS SeSA_A0708 NC_011094.1 682236 685598 D identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein 682236..685598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113672.1 CDS SeSA_A0709 NC_011094.1 685637 685879 D hypothetical protein 685637..685879 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113673.1 CDS SeSA_A0710 NC_011094.1 685933 688611 D identified by match to protein family HMM PF03406; match to protein family HMM PF08400; side tail fiber protein 685933..688611 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113674.1 CDS SeSA_A0711 NC_011094.1 688626 689144 D identified by match to protein family HMM PF02413; bacteriophage tail protein 688626..689144 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113675.1 CDS SeSA_A0712 NC_011094.1 689185 689343 R identified by glimmer; hypothetical protein complement(689185..689343) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113676.1 CDS SeSA_A0714 NC_011094.1 689969 690739 R identified by match to protein family HMM PF00497; polar amino acid ABC transporter substrate-binding protein complement(689969..690739) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113677.1 CDS SeSA_A0715 NC_011094.1 691458 692129 R identified by match to protein family HMM PF02586; hypothetical protein complement(691458..692129) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113678.1 CDS arsH NC_011094.1 692429 693127 R identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690; arsenical resistance protein ArsH complement(692429..693127) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113679.1 CDS SeSA_A0717 NC_011094.1 693578 694867 D identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935; arsenical pump membrane protein 693578..694867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113680.1 CDS arsC NC_011094.1 694880 695305 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 694880..695305 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113681.1 CDS SeSA_A0719 NC_011094.1 695659 695784 R hypothetical protein complement(695659..695784) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113682.1 CDS SeSA_A0720 NC_011094.1 696637 696903 D identified by match to protein family HMM PF01527; transposase subfamily protein 696637..696903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113683.1 CDS SeSA_A0723 NC_011094.1 697905 699362 R O-antigen conversion protein complement(697905..699362) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113684.1 CDS SeSA_A0724 NC_011094.1 699364 700284 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(699364..700284) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113685.1 CDS SeSA_A0725 NC_011094.1 700281 700643 R identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase complement(700281..700643) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113686.1 CDS SeSA_A0726 NC_011094.1 701068 701313 R copE1 complement(701068..701313) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113687.1 CDS SeSA_A0727 NC_011094.1 701513 701887 R identified by match to protein family HMM PF02518; sensor kinase CusS complement(701513..701887) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113688.1 CDS SeSA_A0728 NC_011094.1 701942 702157 D cation efflux system protein CusA 701942..702157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113689.1 CDS SeSA_A0729 NC_011094.1 702208 703062 R identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein complement(702208..703062) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113690.1 CDS SeSA_A0730 NC_011094.1 703278 704603 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 703278..704603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113691.1 CDS SeSA_A0732 NC_011094.1 704653 704775 R identified by glimmer; hypothetical protein complement(704653..704775) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113692.1 CDS SeSA_A0731 NC_011094.1 704759 704995 D identified by match to protein family HMM PF07338; hypothetical protein 704759..704995 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113693.1 CDS SeSA_A0733 NC_011094.1 705008 705568 D identified by match to protein family HMM PF04224; hypothetical protein 705008..705568 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113694.1 CDS SeSA_A0734 NC_011094.1 705663 706838 R molecular chaperone DnaJ complement(705663..706838) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113695.1 CDS SeSA_A0735 NC_011094.1 707164 708558 D identified by match to protein family HMM PF00324; phenylalanine transporter 707164..708558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113696.1 CDS SeSA_A0736 NC_011094.1 708600 709847 R identified by match to protein family HMM PF00924; transporter small conductance mechanosensitive ion channel complement(708600..709847) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113697.1 CDS SeSA_A0737 NC_011094.1 709930 710052 R identified by glimmer; hypothetical protein complement(709930..710052) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113698.1 CDS SeSA_A0738 NC_011094.1 710158 711912 D identified by match to protein family HMM PF00657; match to protein family HMM PF03797; lipase 1 710158..711912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113699.1 CDS SeSA_A0739 NC_011094.1 712338 712679 D identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 712338..712679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113700.1 CDS SeSA_A0740 NC_011094.1 712685 712909 R hypothetical protein complement(712685..712909) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113701.1 CDS SeSA_A0741 NC_011094.1 713000 714118 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(713000..714118) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113702.1 CDS SeSA_A0742 NC_011094.1 714130 714834 R identified by match to protein family HMM PF01648; enterobactin synthase multienzyme complex phosphopantetheinyltransferase complement(714130..714834) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113703.1 CDS SeSA_A0743 NC_011094.1 714882 717137 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(714882..717137) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113704.1 CDS SeSA_A0744 NC_011094.1 717326 718540 D identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 717326..718540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113705.1 CDS SeSA_A0745 NC_011094.1 718571 718789 D identified by match to protein family HMM PF03621; hypothetical protein 718571..718789 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113706.1 CDS entF NC_011094.1 718786 722670 D 'with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin'; enterobactin synthase subunit F 718786..722670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113707.1 CDS SeSA_A0747 NC_011094.1 722920 724056 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 722920..724056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113708.1 CDS SeSA_A0748 NC_011094.1 724110 724904 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(724110..724904) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113709.1 CDS SeSA_A0749 NC_011094.1 724901 725890 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(724901..725890) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113710.1 CDS SeSA_A0750 NC_011094.1 725890 726897 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(725890..726897) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113711.1 CDS SeSA_A0751 NC_011094.1 727008 728252 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 727008..728252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113712.1 CDS SeSA_A0752 NC_011094.1 728315 729271 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(728315..729271) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113713.1 CDS SeSA_A0753 NC_011094.1 729580 730755 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 729580..730755 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113714.1 CDS entE NC_011094.1 730765 732375 D 'bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate'; enterobactin synthase subunit E 730765..732375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113715.1 CDS entB NC_011094.1 732389 733246 D identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 732389..733246 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113716.1 CDS entA NC_011094.1 733246 734001 D 'catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin'; 2,3-dihydroxybenzoate-2,3-dehydrogenase 733246..734001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113717.1 CDS SeSA_A0757 NC_011094.1 734004 734417 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 734004..734417 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113718.1 CDS cstA NC_011094.1 734599 736704 D identified by match to protein family HMM PF02554; carbon starvation protein A 734599..736704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113719.1 CDS SeSA_A0759 NC_011094.1 736768 736965 D identified by match to protein family HMM PF04328; hypothetical protein 736768..736965 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113720.1 CDS SeSA_A0760 NC_011094.1 737001 738089 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(737001..738089) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113721.1 CDS SeSA_A0761 NC_011094.1 738216 739376 D catalyzes the transfer of an amino moiety; aminotransferase 738216..739376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113722.1 CDS SeSA_A0762 NC_011094.1 739377 739994 R identified by match to protein family HMM PF02195; IbrB protein complement(739377..739994) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113723.1 CDS SeSA_A0763 NC_011094.1 739967 741202 R identified by match to protein family HMM PF01507; IbrA protein complement(739967..741202) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113724.1 CDS SeSA_A0764 NC_011094.1 741365 742270 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein complement(741365..742270) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113725.1 CDS dsbG NC_011094.1 742587 743333 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(742587..743333) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113726.1 CDS ahpC NC_011094.1 743774 744337 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 743774..744337 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119765.1 CDS ahpF NC_011094.1 744579 746144 D alkyl hydroperoxide reductase subunit F 744579..746144 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113727.1 CDS SeSA_A0768 NC_011094.1 746477 747037 D identified by match to protein family HMM PF06192; anaerobic dehydrogenase component 746477..747037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113728.1 CDS SeSA_A0769 NC_011094.1 747030 749309 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin-containing oxidoreductase catalytic subunit 747030..749309 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113729.1 CDS SeSA_A0770 NC_011094.1 749306 749863 D identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 749306..749863 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113730.1 CDS SeSA_A0771 NC_011094.1 749863 750630 D molybdopterin-containing oxidoreductase membrane anchor subunit 749863..750630 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113731.2 CDS SeSA_A0772 NC_011094.1 750698 751126 R universal stress protein G complement(750698..751126) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113732.1 CDS SeSA_A0774 NC_011094.1 751348 752586 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; S-(hydroxymethyl)glutathione dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) (fdh) (faldh) 751348..752586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113733.1 CDS SeSA_A0775 NC_011094.1 752669 753079 R 'Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation'; nucleoside diphosphate kinase regulator complement(752669..753079) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113734.1 CDS SeSA_A0776 NC_011094.1 753314 754120 R ribonuclease I complement(753314..754120) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113735.1 CDS SeSA_A0777 NC_011094.1 754230 755693 R identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein complement(754230..755693) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113736.1 CDS citG NC_011094.1 755731 756624 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(755731..756624) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113737.1 CDS citX NC_011094.1 756599 757150 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(756599..757150) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113738.1 CDS citF NC_011094.1 757154 758683 R identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha complement(757154..758683) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113739.1 CDS citE NC_011094.1 758693 759601 R identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta complement(758693..759601) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113740.1 CDS citD NC_011094.1 759598 759894 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(759598..759894) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113741.1 CDS citC NC_011094.1 759891 760967 R identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase complement(759891..760967) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113742.1 CDS SeSA_A0784 NC_011094.1 761353 763014 D identified by match to protein family HMM PF02518; sensor kinase DpiB 761353..763014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113743.1 CDS dpiA NC_011094.1 762983 763663 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 762983..763663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113744.1 CDS dcuC NC_011094.1 763717 765147 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(763717..765147) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113745.1 CDS pagP NC_011094.1 765493 766053 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 765493..766053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113746.1 CDS cspE NC_011094.1 766241 766450 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 766241..766450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113747.1 CDS crcB NC_011094.1 766508 766891 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(766508..766891) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113748.1 CDS SeSA_A0790 NC_011094.1 766982 767770 D identified by match to protein family HMM PF00795; hydrolase YbeM 766982..767770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113749.1 CDS tatE NC_011094.1 767899 768102 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 767899..768102 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113750.1 CDS lipA NC_011094.1 768188 769153 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(768188..769153) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113751.1 CDS SeSA_A0793 NC_011094.1 769194 769328 R identified by glimmer; hypothetical protein complement(769194..769328) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113752.1 CDS SeSA_A0794 NC_011094.1 769359 770312 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(769359..770312) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113753.1 CDS lipB NC_011094.1 770614 771255 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(770614..771255) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113754.1 CDS SeSA_A0796 NC_011094.1 771355 771618 R identified by match to protein family HMM PF04359; hypothetical protein complement(771355..771618) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113755.1 CDS dacA NC_011094.1 771727 772938 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(771727..772938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113756.1 CDS SeSA_A0798 NC_011094.1 773078 774211 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(773078..774211) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113757.1 CDS mrdB NC_011094.1 774222 775334 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein complement(774222..775334) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113758.1 CDS mrdA NC_011094.1 775337 777238 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 complement(775337..777238) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113759.1 CDS SeSA_A0801 NC_011094.1 777269 777736 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(777269..777736) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113760.1 CDS SeSA_A0802 NC_011094.1 777740 778057 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(777740..778057) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113761.1 CDS cobC NC_011094.1 778385 778993 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase complement(778385..778993) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113762.1 CDS cobD NC_011094.1 779090 780184 D 'cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase'; threonine-phosphate decarboxylase 779090..780184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113763.1 CDS nadD NC_011094.1 780159 780809 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(780159..780809) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113764.1 CDS holA NC_011094.1 780802 781833 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(780802..781833) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113765.1 CDS SeSA_A0807 NC_011094.1 781833 782423 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(781833..782423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113766.1 CDS leuS NC_011094.1 782438 785020 R 'leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase'; leucyl-tRNA synthetase complement(782438..785020) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113767.1 CDS SeSA_A0809 NC_011094.1 785308 785598 D identified by match to protein family HMM PF08666; UxaA family hydrolase 785308..785598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113768.1 CDS SeSA_A0810 NC_011094.1 785621 786787 D identified by match to protein family HMM PF04295; UxaA family hydrolase 785621..786787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113769.1 CDS SeSA_A0811 NC_011094.1 786837 787790 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 786837..787790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113770.1 CDS SeSA_A0812 NC_011094.1 787858 789786 D identified by match to protein family HMM PF00158; match to protein family HMM PF06506; sigma-54 dependent transcriptional regulator 787858..789786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113771.1 CDS SeSA_A0813 NC_011094.1 789879 790352 D identified by match to protein family HMM PF07295; hypothetical protein 789879..790352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113772.1 CDS rihA NC_011094.1 790438 791373 R 'Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific'; ribonucleoside hydrolase 1 complement(790438..791373) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113773.1 CDS gltL NC_011094.1 791490 792215 R identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein complement(791490..792215) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113774.1 CDS gltK NC_011094.1 792215 792889 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK complement(792215..792889) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113775.1 CDS gltJ NC_011094.1 792889 793629 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ complement(792889..793629) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113776.1 CDS gltI NC_011094.1 793789 794697 R identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit complement(793789..794697) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113777.1 CDS lnt NC_011094.1 795052 796641 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(795052..796641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113778.1 CDS corC NC_011094.1 796610 797488 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC complement(796610..797488) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113779.1 CDS SeSA_A0822 NC_011094.1 797646 798119 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(797646..798119) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113780.1 CDS SeSA_A0823 NC_011094.1 798116 799162 R identified by match to protein family HMM PF02562; PhoH family protein complement(798116..799162) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113781.1 CDS miaB NC_011094.1 799367 800791 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(799367..800791) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113782.1 CDS ubiF NC_011094.1 800935 802110 D 'catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q'; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 800935..802110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113783.1 CDS SeSA_A0833 NC_011094.1 803137 803820 R identified by match to protein family HMM PF00665; integrase, catalytic region complement(803137..803820) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113784.1 CDS SeSA_A0834 NC_011094.1 803991 804392 R ISPsy11, transposase OrfA complement(803991..804392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113785.1 CDS asnB NC_011094.1 804490 806154 R 'functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP'; asparagine synthetase B complement(804490..806154) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113786.1 CDS SeSA_A0836 NC_011094.1 806444 807196 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase complement(806444..807196) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113787.1 CDS nagC NC_011094.1 807243 808463 R identified by match to protein family HMM PF00480; N-acetylglucosamine repressor complement(807243..808463) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113788.1 CDS nagA NC_011094.1 808468 809622 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(808468..809622) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113789.1 CDS nagB NC_011094.1 809682 810482 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(809682..810482) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113790.1 CDS nagE NC_011094.1 810809 812761 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 810809..812761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113791.1 CDS glnS NC_011094.1 812972 814639 D 'catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; glutaminyl-tRNA synthetase 812972..814639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113792.1 CDS SeSA_A0842 NC_011094.1 814881 814997 D identified by glimmer; hypothetical protein 814881..814997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113793.1 CDS SeSA_A0843 NC_011094.1 815300 816706 D identified by match to protein family HMM PF03573; outer membrane porin, OprD family protein 815300..816706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113794.1 CDS SeSA_A0844 NC_011094.1 816756 817088 D hypothetical protein 816756..817088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113795.1 CDS SeSA_A0845 NC_011094.1 817137 818441 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter complement(817137..818441) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113796.1 CDS SeSA_A0846 NC_011094.1 818492 819631 R identified by match to protein family HMM TIGR02484; citrate utilization protein B complement(818492..819631) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113797.1 CDS cobZ NC_011094.1 819618 821021 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(819618..821021) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113798.1 CDS SeSA_A0848 NC_011094.1 821119 822045 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(821119..822045) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113799.1 CDS fur NC_011094.1 822160 822612 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(822160..822612) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113800.2 CDS fldA NC_011094.1 822894 823424 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin FldA complement(822894..823424) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113801.1 CDS SeSA_A0852 NC_011094.1 823575 823868 R identified by match to protein family HMM PF01402; LexA regulated protein complement(823575..823868) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113802.1 CDS SeSA_A0851 NC_011094.1 823867 823989 D identified by glimmer; hypothetical protein 823867..823989 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113803.1 CDS ybfF NC_011094.1 824002 824772 R identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein complement(824002..824772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113804.1 CDS seqA NC_011094.1 824957 825499 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 824957..825499 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113805.1 CDS pgm NC_011094.1 825524 827164 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 825524..827164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113806.1 CDS SeSA_A0856 NC_011094.1 827279 827782 R hypothetical protein complement(827279..827782) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113807.1 CDS potE NC_011094.1 827829 829148 R 'catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system'; putrescine transporter complement(827829..829148) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113808.1 CDS SeSA_A0858 NC_011094.1 829145 831343 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(829145..831343) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113809.1 CDS SeSA_A0859 NC_011094.1 831742 831855 D hypothetical protein 831742..831855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113810.1 CDS SeSA_A0860 NC_011094.1 832106 832783 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(832106..832783) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113811.1 CDS SeSA_A0861 NC_011094.1 832780 835497 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(832780..835497) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113812.1 CDS kdpC NC_011094.1 835494 836078 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex'; potassium-transporting ATPase subunit C complement(835494..836078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113813.1 CDS kdpB NC_011094.1 836087 838135 R 'One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions'; potassium-transporting ATPase subunit B complement(836087..838135) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113814.1 CDS kdpA NC_011094.1 838156 839835 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(838156..839835) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113815.1 CDS SeSA_A0865 NC_011094.1 840261 840467 D hypothetical protein 840261..840467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113816.1 CDS SeSA_A0866 NC_011094.1 840578 841999 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 840578..841999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113817.1 CDS SeSA_A0867 NC_011094.1 842038 843519 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH complement(842038..843519) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113818.1 CDS SeSA_A0868 NC_011094.1 843848 844591 D identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 843848..844591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113819.1 CDS SeSA_A0869 NC_011094.1 844607 845263 D identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 844607..845263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113820.1 CDS SeSA_A0870 NC_011094.1 845257 846189 D identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 845257..846189 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113821.1 CDS SeSA_A0871 NC_011094.1 846179 846913 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 846179..846913 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113822.1 CDS SeSA_A0872 NC_011094.1 847237 847368 D hypothetical protein 847237..847368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113823.1 CDS SeSA_A0873 NC_011094.1 847428 847994 D identified by match to protein family HMM PF00589; HbiF 847428..847994 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113824.1 CDS SeSA_A0874 NC_011094.1 848833 849531 D hypothetical protein 848833..849531 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113825.1 CDS SeSA_A0875 NC_011094.1 849525 849650 D identified by glimmer; hypothetical protein 849525..849650 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113826.1 CDS glf NC_011094.1 849817 850968 D identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 849817..850968 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113827.1 CDS SeSA_A0877 NC_011094.1 850968 851861 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 850968..851861 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113828.1 CDS SeSA_A0878 NC_011094.1 851874 853007 D identified by match to protein family HMM PF00534; galactosyltransferase 851874..853007 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113829.1 CDS SeSA_A0879 NC_011094.1 853136 853906 D identified by match to protein family HMM PF01061; O-antigen export system, permease 853136..853906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113830.1 CDS SeSA_A0880 NC_011094.1 853910 854620 D identified by match to protein family HMM PF00005; ABC transporter domain-containing protein 853910..854620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113831.1 CDS SeSA_A0881 NC_011094.1 854714 856492 D glycosyltransferase, cell wall biogenesis 854714..856492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113832.1 CDS SeSA_A0882 NC_011094.1 856742 857467 D hypothetical protein 856742..857467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113833.1 CDS SeSA_A0883 NC_011094.1 857471 859420 D glycosyl transferase family protein 857471..859420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113834.1 CDS SeSA_A0884 NC_011094.1 859488 859625 D hypothetical protein 859488..859625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113835.1 CDS SeSA_A0885 NC_011094.1 859674 860465 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 859674..860465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113836.1 CDS SeSA_A0886 NC_011094.1 860520 861566 R identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; protein AbrB complement(860520..861566) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113837.1 CDS gltA NC_011094.1 861703 862986 R 'type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH'; type II citrate synthase complement(861703..862986) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113838.1 CDS sdhC NC_011094.1 863726 864130 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 863726..864130 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113839.1 CDS sdhD NC_011094.1 864124 864471 D identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 864124..864471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113840.1 CDS sdhA NC_011094.1 864471 866237 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 864471..866237 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113841.1 CDS sdhB NC_011094.1 866251 866970 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 866251..866970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113842.1 CDS sucA NC_011094.1 867494 870295 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 867494..870295 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113843.1 CDS sucB NC_011094.1 870310 871518 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 870310..871518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113844.1 CDS sucC NC_011094.1 871660 872826 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 871660..872826 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113845.1 CDS SeSA_A0895 NC_011094.1 872826 873695 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 872826..873695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113846.1 CDS SeSA_A0896 NC_011094.1 873725 873850 D identified by glimmer; hypothetical protein 873725..873850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113847.1 CDS SeSA_A0897 NC_011094.1 873937 874062 D identified by glimmer; hypothetical protein 873937..874062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113848.1 CDS cydA NC_011094.1 875277 876845 D identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 875277..876845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113849.1 CDS cydB1 NC_011094.1 876861 878000 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 876861..878000 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113850.1 CDS SeSA_A0900 NC_011094.1 878015 878128 D identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 878015..878128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113851.1 CDS SeSA_A0901 NC_011094.1 878128 878421 D identified by match to protein family HMM PF09600; match to protein family HMM TIGR02112; hypothetical protein 878128..878421 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113852.1 CDS SeSA_A0902 NC_011094.1 878650 879054 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 878650..879054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113853.1 CDS tolQ NC_011094.1 879051 879743 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 879051..879743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113854.1 CDS tolR NC_011094.1 879747 880175 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 879747..880175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113855.1 CDS tolB NC_011094.1 881532 882827 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 881532..882827 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113856.1 CDS pal NC_011094.1 882862 883386 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 882862..883386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113857.1 CDS SeSA_A0909 NC_011094.1 883396 884184 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 883396..884184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113858.2 CDS nadA NC_011094.1 885802 886845 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 885802..886845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113859.1 CDS SeSA_A0916 NC_011094.1 886870 887589 D identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; protein PnuC 886870..887589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113860.1 CDS SeSA_A0917 NC_011094.1 887586 888524 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(887586..888524) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113861.1 CDS SeSA_A0918 NC_011094.1 888635 889021 R homeobox protein complement(888635..889021) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113862.1 CDS aroG NC_011094.1 889341 890393 D 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 889341..890393 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113863.1 CDS SeSA_A0920 NC_011094.1 890547 891626 D identified by match to protein family HMM PF01032; ABC transporter permease 890547..891626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113864.1 CDS SeSA_A0921 NC_011094.1 891626 892402 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 891626..892402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113865.1 CDS gpmA NC_011094.1 892493 893245 R '2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate'; phosphoglyceromutase complement(892493..893245) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113866.1 CDS galM NC_011094.1 893469 894509 R 'catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose'; aldose 1-epimerase complement(893469..894509) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113867.1 CDS galK NC_011094.1 894503 895651 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(894503..895651) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113868.1 CDS galT NC_011094.1 895654 896700 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(895654..896700) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113869.1 CDS galE NC_011094.1 896711 897727 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase complement(896711..897727) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113870.1 CDS SeSA_A0927 NC_011094.1 897950 898858 R hypothetical protein complement(897950..898858) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113871.1 CDS SeSA_A0928 NC_011094.1 899029 900504 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF complement(899029..900504) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113872.1 CDS SeSA_A0929 NC_011094.1 900572 901360 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(900572..901360) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113873.1 CDS SeSA_A0930 NC_011094.1 901489 901638 D hypothetical protein 901489..901638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113874.1 CDS modA NC_011094.1 901805 902578 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 901805..902578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113875.1 CDS modB NC_011094.1 902578 903267 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 902578..903267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113876.1 CDS modC NC_011094.1 903270 904328 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 903270..904328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113877.1 CDS SeSA_A0934 NC_011094.1 904329 905189 R 'YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily'; phosphotransferase complement(904329..905189) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113878.1 CDS SeSA_A0935 NC_011094.1 905311 906306 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 905311..906306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113879.1 CDS SeSA_A0936 NC_011094.1 906450 907733 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase complement(906450..907733) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113880.1 CDS hutI NC_011094.1 907971 909194 D 'catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway'; imidazolonepropionase 907971..909194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113881.1 CDS hutG NC_011094.1 909191 910132 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 909191..910132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113882.1 CDS hutC NC_011094.1 910177 910902 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 910177..910902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113883.1 CDS hutU NC_011094.1 911099 912784 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 911099..912784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113884.1 CDS hutH NC_011094.1 912786 914306 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 912786..914306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113885.1 CDS SeSA_A0942 NC_011094.1 914391 914867 R YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein complement(914391..914867) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113886.1 CDS bioA NC_011094.1 914925 916214 R 'catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate'; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(914925..916214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113887.1 CDS bioB NC_011094.1 916301 917341 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 916301..917341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113888.1 CDS bioF NC_011094.1 917338 918495 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 917338..918495 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113889.1 CDS bioC NC_011094.1 918479 919234 D 'methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth'; biotin biosynthesis protein BioC 918479..919234 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113890.1 CDS bioD NC_011094.1 919227 919913 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 919227..919913 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113891.1 CDS uvrB NC_011094.1 920564 922585 D 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion'; excinuclease ABC subunit B 920564..922585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113892.1 CDS SeSA_A0949 NC_011094.1 923074 925341 D leucine-rich repeat protein 923074..925341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113893.1 CDS SeSA_A0950 NC_011094.1 925433 926341 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein complement(925433..926341) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113894.1 CDS moaA NC_011094.1 926738 927727 D 'together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z'; molybdenum cofactor biosynthesis protein A 926738..927727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113895.1 CDS moaB NC_011094.1 927749 928261 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 927749..928261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113896.1 CDS moaC NC_011094.1 928264 928749 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 928264..928749 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113897.1 CDS moaD NC_011094.1 928742 928987 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 928742..928987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113898.1 CDS moaE NC_011094.1 928989 929441 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 928989..929441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113899.1 CDS SeSA_A0956 NC_011094.1 929489 930193 D identified by match to protein family HMM PF01027; hypothetical protein 929489..930193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113900.2 CDS SeSA_A0957 NC_011094.1 930339 931046 D hypothetical protein 930339..931046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113901.1 CDS SeSA_A0958 NC_011094.1 931235 931477 D hypothetical protein 931235..931477 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113902.1 CDS SeSA_A0959 NC_011094.1 931480 932442 R hypothetical protein complement(931480..932442) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113903.1 CDS SeSA_A0960 NC_011094.1 932442 933683 R identified by match to protein family HMM PF00614; cardiolipin synthase 2 complement(932442..933683) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113904.1 CDS SeSA_A0961 NC_011094.1 933680 934438 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(933680..934438) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113905.1 CDS SeSA_A0962 NC_011094.1 934571 934981 D hypothetical protein 934571..934981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113906.1 CDS SeSA_A0963 NC_011094.1 934943 936049 R identified by match to protein family HMM PF01061; ABC transporter permease complement(934943..936049) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113907.1 CDS SeSA_A0964 NC_011094.1 936149 937279 R identified by match to protein family HMM PF01061; inner membrane transport permease YbhS complement(936149..937279) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113908.1 CDS SeSA_A0965 NC_011094.1 937272 939008 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(937272..939008) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113909.1 CDS SeSA_A0966 NC_011094.1 939001 939996 R identified by match to protein family HMM PF00529; hypothetical protein complement(939001..939996) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113910.1 CDS SeSA_A0967 NC_011094.1 939996 940670 R identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator complement(939996..940670) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113911.1 CDS SeSA_A0968 NC_011094.1 940900 942261 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 940900..942261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113912.1 CDS dinG NC_011094.1 942469 944613 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 942469..944613 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113913.1 CDS SeSA_A0970 NC_011094.1 944643 945617 D identified by match to protein family HMM PF02885; glycosyl transferase 944643..945617 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113914.1 CDS SeSA_A0972 NC_011094.1 945773 946033 R identified by match to protein family HMM PF07338; hypothetical protein complement(945773..946033) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113915.1 CDS SeSA_A0971 NC_011094.1 946002 946115 D identified by glimmer; hypothetical protein 946002..946115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113916.1 CDS SeSA_A0973 NC_011094.1 946318 946584 R identified by match to protein family HMM PF01258; hypothetical protein complement(946318..946584) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113917.1 CDS SeSA_A0974 NC_011094.1 946789 947715 D identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 946789..947715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113918.1 CDS SeSA_A0975 NC_011094.1 947712 949934 R identified by match to protein family HMM PF00924; hypothetical protein complement(947712..949934) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113919.1 CDS glnQ NC_011094.1 950053 950775 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(950053..950775) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113920.1 CDS glnP NC_011094.1 950772 951431 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(950772..951431) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113921.1 CDS glnH NC_011094.1 951577 952323 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein complement(951577..952323) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113922.1 CDS SeSA_A0979 NC_011094.1 952320 952442 R identified by glimmer; hypothetical protein complement(952320..952442) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113923.1 CDS SeSA_A0980 NC_011094.1 952800 953303 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(952800..953303) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113924.1 CDS SeSA_A0981 NC_011094.1 953419 953577 R hypothetical protein complement(953419..953577) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113925.1 CDS SeSA_A0982 NC_011094.1 953606 954493 R identified by match to protein family HMM PF00892; threonine and homoserine efflux system complement(953606..954493) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113926.1 CDS ompX NC_011094.1 954847 955362 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 954847..955362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113927.1 CDS SeSA_A0984 NC_011094.1 955425 957005 R identified by match to protein family HMM PF00884; hypothetical protein complement(955425..957005) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113929.1 CDS SeSA_A0987 NC_011094.1 957584 958057 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 957584..958057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113930.1 CDS SeSA_A0989 NC_011094.1 959210 960130 R identified by match to protein family HMM PF03734; hypothetical protein complement(959210..960130) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113931.1 CDS SeSA_A0990 NC_011094.1 960350 961945 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 960350..961945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113932.1 CDS SeSA_A0991 NC_011094.1 962067 963332 R identified by match to protein family HMM PF07350; hypothetical protein complement(962067..963332) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113933.1 CDS SeSA_A0992 NC_011094.1 963478 963591 D identified by glimmer; hypothetical protein 963478..963591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113934.1 CDS SeSA_A0993 NC_011094.1 963594 964403 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 963594..964403 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113935.1 CDS SeSA_A0994 NC_011094.1 964481 966913 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 complement(964481..966913) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113936.1 CDS SeSA_A0995 NC_011094.1 966919 967818 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family protein complement(966919..967818) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113937.1 CDS moeB NC_011094.1 968096 968845 R 'ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase'; molybdopterin biosynthesis protein MoeB complement(968096..968845) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113938.1 CDS moeA NC_011094.1 968845 970080 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(968845..970080) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113939.1 CDS SeSA_A0998 NC_011094.1 970284 971225 D identified by match to protein family HMM PF01112; L-asparaginase 970284..971225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113940.1 CDS SeSA_A0999 NC_011094.1 971236 973107 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 971236..973107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113941.1 CDS SeSA_A1000 NC_011094.1 973140 974678 D identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 973140..974678 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113942.1 CDS gsiC NC_011094.1 974739 975659 D identified by match to protein family HMM PF00528; glutathione ABC transporter permease 974739..975659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113943.1 CDS SeSA_A1002 NC_011094.1 975662 976573 D identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 975662..976573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113944.1 CDS rimO NC_011094.1 976664 977989 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(976664..977989) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113945.1 CDS bssR NC_011094.1 978220 978603 D 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssR 978220..978603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113947.2 CDS SeSA_A1006 NC_011094.1 979739 980593 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 979739..980593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113948.1 CDS SeSA_A1007 NC_011094.1 980604 981557 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 980604..981557 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113949.1 CDS SeSA_A1008 NC_011094.1 981590 981853 D MaoC like domain-containing protein 981590..981853 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113950.1 CDS SeSA_A1009 NC_011094.1 981850 983013 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 981850..983013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113951.1 CDS SeSA_A1010 NC_011094.1 983462 985147 D identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 983462..985147 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113952.1 CDS SeSA_A1011 NC_011094.1 985153 986043 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein complement(985153..986043) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113953.1 CDS SeSA_A1012 NC_011094.1 986308 986733 R citrate transporter family protein complement(986308..986733) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113954.1 CDS SeSA_A1013 NC_011094.1 987080 987760 D identified by match to protein family HMM PF03811; match to protein family HMM PF07995; dehydrogenase 987080..987760 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113955.1 CDS SeSA_A1014 NC_011094.1 987757 988383 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein complement(987757..988383) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113956.2 CDS SeSA_A1015 NC_011094.1 988627 989829 D 'penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 988627..989829 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113957.1 CDS SeSA_A1016 NC_011094.1 989874 990632 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR complement(989874..990632) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113958.1 CDS SeSA_A1017 NC_011094.1 990704 991378 R identified by match to protein family HMM PF01569; UDP pyrophosphate phosphatase complement(990704..991378) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113959.1 CDS SeSA_A1018 NC_011094.1 991625 992857 D identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 991625..992857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113960.1 CDS SeSA_A1019 NC_011094.1 992911 993726 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI complement(992911..993726) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113961.1 CDS SeSA_A1020 NC_011094.1 993723 994934 R identified by match to protein family HMM PF07690; hypothetical protein complement(993723..994934) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113962.1 CDS SeSA_A1021 NC_011094.1 995102 995722 D identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 995102..995722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113963.1 CDS SeSA_A1023 NC_011094.1 995839 997524 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(995839..997524) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113964.2 CDS SeSA_A1024 NC_011094.1 997795 998172 D hypothetical protein 997795..998172 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113965.1 CDS grxA NC_011094.1 998204 998467 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(998204..998467) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113966.1 CDS SeSA_A1026 NC_011094.1 998637 998927 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 998637..998927 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113967.1 CDS nfsA NC_011094.1 998911 999633 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 998911..999633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113968.1 CDS rimK NC_011094.1 999691 1000593 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 999691..1000593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113969.1 CDS SeSA_A1029 NC_011094.1 1000689 1001165 D hypothetical protein 1000689..1001165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113970.1 CDS SeSA_A1030 NC_011094.1 1001511 1002626 D identified by match to protein family HMM PF01547; putrescine ABC transporter substrate-binding protein 1001511..1002626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113971.1 CDS potG NC_011094.1 1002714 1003847 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 1002714..1003847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113972.1 CDS potH NC_011094.1 1003857 1004810 D identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 1003857..1004810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113973.1 CDS potI NC_011094.1 1004807 1005652 D identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 1004807..1005652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113974.1 CDS SeSA_A1034 NC_011094.1 1005636 1006199 D hypothetical protein 1005636..1006199 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113975.1 CDS rumB NC_011094.1 1006242 1007369 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1006242..1007369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113976.1 CDS SeSA_A1036 NC_011094.1 1007527 1007655 D hypothetical protein 1007527..1007655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113977.1 CDS SeSA_A1037 NC_011094.1 1007664 1009007 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 1007664..1009007 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119766.1 CDS SeSA_A1038 NC_011094.1 1009037 1009357 D hypothetical protein 1009037..1009357 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113978.1 CDS SeSA_A1039 NC_011094.1 1009367 1010854 D identified by match to protein family HMM PF00884; sulfatase 1009367..1010854 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113980.1 CDS artJ NC_011094.1 1011061 1011792 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein complement(1011061..1011792) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113981.1 CDS artM NC_011094.1 1012029 1012697 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(1012029..1012697) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113982.1 CDS artQ NC_011094.1 1012697 1013413 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(1012697..1013413) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113983.1 CDS artI NC_011094.1 1013420 1014151 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein complement(1013420..1014151) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113984.1 CDS artP NC_011094.1 1014169 1014897 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(1014169..1014897) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113985.1 CDS SeSA_A1046 NC_011094.1 1015126 1015641 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein complement(1015126..1015641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113986.1 CDS SeSA_A1047 NC_011094.1 1015769 1016092 D identified by match to protein family HMM PF01906; hypothetical protein 1015769..1016092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113987.1 CDS SeSA_A1048 NC_011094.1 1016089 1016919 D identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 1016089..1016919 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113988.1 CDS SeSA_A1049 NC_011094.1 1016916 1017929 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(1016916..1017929) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113989.1 CDS SeSA_A1050 NC_011094.1 1018025 1019458 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein complement(1018025..1019458) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113990.1 CDS ltaE NC_011094.1 1019469 1020470 R 'low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine'; L-threonine aldolase complement(1019469..1020470) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113991.1 CDS poxB NC_011094.1 1020509 1022227 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(1020509..1022227) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113992.1 CDS hcr NC_011094.1 1022385 1023356 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase, NADH-dependent complement(1022385..1023356) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113993.1 CDS hcp NC_011094.1 1023365 1025017 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1023365..1025017) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113995.1 CDS SeSA_A1056 NC_011094.1 1025161 1026060 R identified by match to protein family HMM PF03956; hypothetical protein complement(1025161..1026060) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113996.1 CDS SeSA_A1057 NC_011094.1 1026261 1027919 D nucleotide triphosphate hydrolase domain-containing protein 1026261..1027919 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113997.1 CDS SeSA_A1058 NC_011094.1 1027916 1028866 R identified by match to protein family HMM PF04393; hypothetical protein complement(1027916..1028866) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113998.1 CDS SeSA_A1059 NC_011094.1 1029012 1030130 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1029012..1030130 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002113999.1 CDS SeSA_A1060 NC_011094.1 1030127 1032073 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1030127..1032073 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114000.1 CDS cspD NC_011094.1 1032203 1032424 R identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD complement(1032203..1032424) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114001.1 CDS clpS NC_011094.1 1032748 1033068 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1032748..1033068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114002.1 CDS clpA NC_011094.1 1033099 1035375 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1033099..1035375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114003.1 CDS SeSA_A1065 NC_011094.1 1036166 1036843 R identified by match to protein family HMM PF00857; SlsA complement(1036166..1036843) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114004.1 CDS SeSA_A1066 NC_011094.1 1036863 1037723 R identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin complement(1036863..1037723) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114005.1 CDS SeSA_A1067 NC_011094.1 1037832 1038743 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 1037832..1038743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114006.1 CDS infA NC_011094.1 1038834 1039052 R 'stimulates the activities of the other two initiation factors, IF-2 and IF-3'; translation initiation factor IF-1 complement(1038834..1039052) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114007.1 CDS aat NC_011094.1 1039364 1040068 R 'leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys'; leucyl/phenylalanyl-tRNA--protein transferase complement(1039364..1040068) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114008.1 CDS SeSA_A1070 NC_011094.1 1040113 1041834 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1040113..1041834) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114009.1 CDS cydD NC_011094.1 1041835 1043601 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1041835..1043601) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114010.1 CDS trxB NC_011094.1 1043716 1044684 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(1043716..1044684) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114011.1 CDS lrp NC_011094.1 1045231 1045725 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1045231..1045725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114012.1 CDS SeSA_A1074 NC_011094.1 1045860 1049936 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1045860..1049936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114013.1 CDS lolA NC_011094.1 1050079 1050690 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1050079..1050690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114014.1 CDS SeSA_A1076 NC_011094.1 1050700 1052043 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1050700..1052043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114015.1 CDS serS NC_011094.1 1052302 1053594 D 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; seryl-tRNA synthetase 1052302..1053594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114016.1 CDS SeSA_A1078 NC_011094.1 1053832 1056276 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1053832..1056276 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114017.1 CDS dmsB_2 NC_011094.1 1056287 1056904 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit 1056287..1056904 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114018.1 CDS dmsC1 NC_011094.1 1056906 1057769 D identified by match to protein family HMM PF04976; anaerobic dimethyl sulfoxide reductase, C subunit 1056906..1057769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114019.1 CDS SeSA_A1081 NC_011094.1 1058119 1059267 D identified by match to protein family HMM PF07690; MFS family transporter protein 1058119..1059267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114020.1 CDS SeSA_A1082 NC_011094.1 1059485 1060906 D identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1059485..1060906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114021.1 CDS pflA NC_011094.1 1061198 1061995 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1061198..1061995) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114022.1 CDS SeSA_A1084 NC_011094.1 1062123 1062287 D hypothetical protein 1062123..1062287 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114023.2 CDS SeSA_A1085 NC_011094.1 1062571 1063530 D identified by glimmer; hypothetical protein 1062571..1063530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114024.1 CDS pflB2 NC_011094.1 1063602 1065884 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(1063602..1065884) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114025.1 CDS SeSA_A1087 NC_011094.1 1065944 1066759 R identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA complement(1065944..1066759) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114026.1 CDS SeSA_A1088 NC_011094.1 1067206 1069041 R identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein complement(1067206..1069041) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114027.1 CDS SeSA_A1089 NC_011094.1 1069103 1069795 D identified by match to protein family HMM PF04239; hypothetical protein 1069103..1069795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114028.1 CDS serC NC_011094.1 1069981 1071069 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1069981..1071069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114029.1 CDS aroA NC_011094.1 1071140 1072423 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1071140..1072423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114030.1 CDS SeSA_A1092 NC_011094.1 1072567 1073328 D identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1072567..1073328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114031.1 CDS cmk NC_011094.1 1073501 1074184 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1073501..1074184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114032.1 CDS rpsA NC_011094.1 1074298 1075971 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1074298..1075971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114033.1 CDS ihfB NC_011094.1 1076127 1076411 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit beta 1076127..1076411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114034.1 CDS SeSA_A1097 NC_011094.1 1076635 1078905 D identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1076635..1078905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114035.1 CDS SeSA_A1096 NC_011094.1 1076784 1076903 R identified by glimmer; hypothetical protein complement(1076784..1076903) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114036.1 CDS msbA NC_011094.1 1078942 1080690 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1078942..1080690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114037.1 CDS lpxK NC_011094.1 1080687 1081664 D 'transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate'; tetraacyldisaccharide 4'-kinase 1080687..1081664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114038.1 CDS SeSA_A1100 NC_011094.1 1081708 1082940 D identified by match to protein family HMM PF06224; hypothetical protein 1081708..1082940 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114039.1 CDS SeSA_A1101 NC_011094.1 1082992 1083174 D identified by match to protein family HMM PF03966; hypothetical protein 1082992..1083174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114040.1 CDS kdsB NC_011094.1 1083171 1083917 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1083171..1083917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114041.1 CDS SeSA_A1103 NC_011094.1 1084128 1085021 D hypothetical protein 1084128..1085021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114042.1 CDS SeSA_A1104 NC_011094.1 1085001 1085777 R identified by match to protein family HMM PF02698; hypothetical protein complement(1085001..1085777) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114043.1 CDS smtA NC_011094.1 1085913 1086716 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1085913..1086716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114044.1 CDS mukF NC_011094.1 1086709 1088031 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1086709..1088031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114045.1 CDS mukE NC_011094.1 1088012 1088716 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1088012..1088716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114046.1 CDS mukB NC_011094.1 1088716 1093182 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1088716..1093182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114047.1 CDS SeSA_A1109 NC_011094.1 1093202 1093324 D identified by glimmer; hypothetical protein 1093202..1093324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114048.1 CDS SeSA_A1110 NC_011094.1 1093527 1095374 D identified by match to protein family HMM PF01471; hypothetical protein 1093527..1095374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114049.1 CDS SeSA_A1111 NC_011094.1 1095634 1096182 D identified by match to protein family HMM PF05951; match to protein family HMM PF08291; Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein 1095634..1096182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114050.1 CDS SeSA_A1112 NC_011094.1 1096210 1096857 D identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1096210..1096857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114051.1 CDS aspC NC_011094.1 1096919 1098109 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1096919..1098109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114052.1 CDS SeSA_A1114 NC_011094.1 1098294 1099385 R identified by match to protein family HMM PF00267; outer membrane protein F complement(1098294..1099385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114053.1 CDS SeSA_A1115 NC_011094.1 1099711 1099839 D identified by glimmer; hypothetical protein 1099711..1099839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114054.1 CDS SeSA_A1116 NC_011094.1 1099915 1100034 R identified by glimmer; hypothetical protein complement(1099915..1100034) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114055.1 CDS asnC NC_011094.1 1099991 1101391 R 'catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; asparaginyl-tRNA synthetase complement(1099991..1101391) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114056.1 CDS pncB NC_011094.1 1101560 1102762 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1101560..1102762) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114057.1 CDS pepN NC_011094.1 1103029 1105641 D identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase 1103029..1105641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114058.1 CDS pyrD NC_011094.1 1105849 1106859 D 'catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors'; dihydroorotate dehydrogenase 2 1105849..1106859 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114059.1 CDS SeSA_A1121 NC_011094.1 1107025 1107567 D identified by match to protein family HMM PF07126; hypothetical protein 1107025..1107567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114060.1 CDS SeSA_A1122 NC_011094.1 1107564 1108673 R identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein complement(1107564..1108673) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114061.1 CDS rlmL NC_011094.1 1108772 1110880 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1108772..1110880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114062.1 CDS SeSA_A1124 NC_011094.1 1110893 1112800 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1110893..1112800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114063.1 CDS SeSA_A1126 NC_011094.1 1112815 1114068 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; Pqi5 1112815..1114068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114064.1 CDS SeSA_A1127 NC_011094.1 1114073 1115713 D identified by match to protein family HMM PF02470; paraquat-inducible protein B 1114073..1115713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114065.1 CDS SeSA_A1128 NC_011094.1 1115710 1116273 D identified by match to protein family HMM PF03886; lipoprotein 1115710..1116273 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114066.1 CDS SeSA_A1129 NC_011094.1 1116228 1116365 R identified by glimmer; hypothetical protein complement(1116228..1116365) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114067.1 CDS fabA NC_011094.1 1116796 1117314 R 'catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP'; 3-hydroxydecanoyl-ACP dehydratase complement(1116796..1117314) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114068.1 CDS SeSA_A1131 NC_011094.1 1117383 1119143 R identified by match to protein family HMM PF05362; protease La-like protein complement(1117383..1119143) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114069.1 CDS SeSA_A1132 NC_011094.1 1119329 1119781 D identified by match to protein family HMM PF06303; hypothetical protein 1119329..1119781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114070.1 CDS ompA NC_011094.1 1119853 1120962 R 'OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d'; outer membrane protein A complement(1119853..1120962) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114071.1 CDS SeSA_A1134 NC_011094.1 1121262 1121771 R identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor complement(1121262..1121771) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114072.1 CDS SeSA_A1135 NC_011094.1 1121988 1122593 D identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1121988..1122593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114073.1 CDS yccS NC_011094.1 1122580 1124733 R identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein complement(1122580..1124733) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114074.1 CDS SeSA_A1137 NC_011094.1 1124752 1125195 R identified by match to protein family HMM PF03733; hypothetical protein complement(1124752..1125195) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114075.1 CDS helD NC_011094.1 1125319 1127373 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1125319..1127373 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114076.1 CDS mgsA NC_011094.1 1127430 1127888 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1127430..1127888) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114077.1 CDS SeSA_A1140 NC_011094.1 1127983 1128645 R hypothetical protein complement(1127983..1128645) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119767.1 CDS SeSA_A1141 NC_011094.1 1128816 1129232 D hypothetical protein 1128816..1129232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114078.1 CDS SeSA_A1142 NC_011094.1 1129277 1129594 R identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ complement(1129277..1129594) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114079.1 CDS SeSA_A1143 NC_011094.1 1129652 1130863 R hypothetical protein complement(1129652..1130863) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114080.1 CDS SeSA_A1144 NC_011094.1 1131078 1131626 D identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1131078..1131626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114081.1 CDS SeSA_A1145 NC_011094.1 1131643 1132431 D identified by match to protein family HMM PF00165; regulatory protein 1131643..1132431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114082.1 CDS SeSA_A1146 NC_011094.1 1132480 1132761 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1132480..1132761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114083.1 CDS SeSA_A1147 NC_011094.1 1132758 1133087 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE complement(1132758..1133087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114084.1 CDS SeSA_A1148 NC_011094.1 1133174 1133833 R identified by match to protein family HMM PF01027; hypothetical protein complement(1133174..1133833) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114085.1 CDS SeSA_A1149 NC_011094.1 1133899 1134048 D identified by glimmer; hypothetical protein 1133899..1134048 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114086.1 CDS SeSA_A1152 NC_011094.1 1135122 1135997 R identified by match to protein family HMM PF00805; secreted effector protein complement(1135122..1135997) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114087.1 CDS SeSA_A1153 NC_011094.1 1136209 1136352 D identified by glimmer; hypothetical protein 1136209..1136352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114088.1 CDS SeSA_A1154 NC_011094.1 1136544 1136885 R identified by match to protein family HMM PF07824; chaperone protein SigE complement(1136544..1136885) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114089.1 CDS SeSA_A1155 NC_011094.1 1136902 1138587 R identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB complement(1136902..1138587) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114090.1 CDS SeSA_A1156 NC_011094.1 1138949 1139089 D hypothetical protein 1138949..1139089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114091.1 CDS SeSA_A1157 NC_011094.1 1139121 1139306 D identified by glimmer; hypothetical protein 1139121..1139306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114092.1 CDS SeSA_A1158 NC_011094.1 1139309 1140871 R identified by match to protein family HMM PF03577; peptidase family C69 complement(1139309..1140871) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114093.1 CDS SeSA_A1159 NC_011094.1 1140951 1142315 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase subfamily protein complement(1140951..1142315) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114094.1 CDS SeSA_A1160 NC_011094.1 1142308 1142988 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW complement(1142308..1142988) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114095.1 CDS uraH NC_011094.1 1143124 1143534 D identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1143124..1143534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114096.1 CDS hpaC NC_011094.1 1143867 1144379 R identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component complement(1143867..1144379) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114097.1 CDS hpaB NC_011094.1 1144397 1145959 R identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component complement(1144397..1145959) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114098.1 CDS hpaR NC_011094.1 1146177 1146617 R identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator, HpaR complement(1146177..1146617) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114099.1 CDS SeSA_A1165 NC_011094.1 1146892 1148181 D identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase 1146892..1148181 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114100.1 CDS hpaE NC_011094.1 1148178 1149644 D identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1148178..1149644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114101.1 CDS hpaD NC_011094.1 1149646 1150497 D identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1149646..1150497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114102.1 CDS hpcD NC_011094.1 1150507 1150887 D identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1150507..1150887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114103.1 CDS hpaH NC_011094.1 1151031 1151834 D identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1151031..1151834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114104.1 CDS hpaI NC_011094.1 1151845 1152636 D identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1151845..1152636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114105.1 CDS hpaX NC_011094.1 1152709 1154085 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1152709..1154085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114106.1 CDS hpaA NC_011094.1 1154095 1154991 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1154095..1154991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114107.1 CDS SeSA_A1173 NC_011094.1 1155005 1155943 D identified by match to protein family HMM PF00753; hypothetical protein 1155005..1155943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114108.1 CDS SeSA_A1174 NC_011094.1 1157161 1157316 D hypothetical protein 1157161..1157316 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114109.1 CDS SeSA_A1175 NC_011094.1 1157367 1157672 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1157367..1157672) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114110.1 CDS SeSA_A1176 NC_011094.1 1157672 1158592 R 'functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock'; curved DNA-binding protein CbpA complement(1157672..1158592) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114111.1 CDS SeSA_A1177 NC_011094.1 1158828 1159190 D membrane protein, suppressor for copper-sensitivity A 1158828..1159190 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114112.1 CDS SeSA_A1178 NC_011094.1 1159239 1161125 D identified by match to protein family HMM PF02683; membrane protein, suppressor for copper-sensitivity B 1159239..1161125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114113.1 CDS SeSA_A1179 NC_011094.1 1161122 1161745 D identified by match to protein family HMM PF01323; copper sensitivity supression protein 1161122..1161745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114114.1 CDS SeSA_A1180 NC_011094.1 1161735 1162241 D identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1161735..1162241 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114115.1 CDS SeSA_A1181 NC_011094.1 1162374 1163615 D identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1162374..1163615 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114116.1 CDS SeSA_A1182 NC_011094.1 1163649 1163876 R hypothetical protein complement(1163649..1163876) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114117.1 CDS wrbA NC_011094.1 1163897 1164493 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1163897..1164493) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114118.1 CDS SeSA_A1184 NC_011094.1 1164693 1164851 D hypothetical protein 1164693..1164851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114119.1 CDS SeSA_A1185 NC_011094.1 1164891 1165085 D hypothetical protein 1164891..1165085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114120.1 CDS SeSA_A1186 NC_011094.1 1165182 1165820 D identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1165182..1165820 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114121.1 CDS SeSA_A1187 NC_011094.1 1165817 1166212 R identified by match to protein family HMM PF07007; hypothetical protein complement(1165817..1166212) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114122.1 CDS putA NC_011094.1 1166271 1170233 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1166271..1170233) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114123.1 CDS putP NC_011094.1 1170655 1172163 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1170655..1172163 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114124.1 CDS SeSA_A1192 NC_011094.1 1173950 1174831 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator, RpiR family protein complement(1173950..1174831) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114125.1 CDS SeSA_A1193 NC_011094.1 1175116 1176612 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter complement(1175116..1176612) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114126.1 CDS SeSA_A1194 NC_011094.1 1176949 1177629 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1176949..1177629) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114127.1 CDS SeSA_A1195 NC_011094.1 1178136 1179296 D identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM TIGR03547; N-acetylneuraminic acid mutarotase 1178136..1179296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114128.1 CDS SeSA_A1196 NC_011094.1 1179341 1180033 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1179341..1180033 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114129.1 CDS SeSA_A1197 NC_011094.1 1180316 1181596 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 1180316..1181596 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114130.1 CDS SeSA_A1198 NC_011094.1 1181610 1182713 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1181610..1182713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114131.1 CDS SeSA_A1201 NC_011094.1 1183209 1183373 R identified by glimmer; hypothetical protein complement(1183209..1183373) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114132.1 CDS SeSA_A1200 NC_011094.1 1183372 1184310 D identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase 1183372..1184310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114133.1 CDS SeSA_A1202 NC_011094.1 1184395 1185132 D identified by match to protein family HMM PF02811; hydrolase 1184395..1185132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114134.1 CDS SeSA_A1203 NC_011094.1 1185156 1185710 D identified by match to protein family HMM PF06192; chaperone, TorD family protein 1185156..1185710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114135.1 CDS SeSA_A1204 NC_011094.1 1185781 1186293 D identified by match to protein family HMM PF06496; hypothetical protein 1185781..1186293 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114136.1 CDS SeSA_A1205 NC_011094.1 1186332 1187165 R identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG complement(1186332..1187165) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114137.1 CDS SeSA_A1206 NC_011094.1 1187192 1187608 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF complement(1187192..1187608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114138.1 CDS SeSA_A1207 NC_011094.1 1187635 1188030 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(1187635..1188030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114139.1 CDS csgD NC_011094.1 1188035 1188685 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1188035..1188685) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114140.1 CDS csgB NC_011094.1 1189441 1189896 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1189441..1189896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114141.1 CDS SeSA_A1210 NC_011094.1 1189938 1190393 D identified by match to protein family HMM PF07012; cryptic curlin major subunit 1189938..1190393 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114142.1 CDS csgC NC_011094.1 1190455 1190781 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1190455..1190781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114143.1 CDS SeSA_A1212 NC_011094.1 1190760 1190903 D identified by glimmer; hypothetical protein 1190760..1190903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114144.1 CDS SeSA_A1213 NC_011094.1 1190913 1191233 D hypothetical protein 1190913..1191233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114145.1 CDS SeSA_A1214 NC_011094.1 1191319 1191858 D identified by match to protein family HMM PF01661; hypothetical protein 1191319..1191858 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114146.2 CDS SeSA_A1215 NC_011094.1 1191794 1193281 D identified by match to protein family HMM PF00614; phopholipase D 1191794..1193281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114147.1 CDS mdoC NC_011094.1 1193298 1194452 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1193298..1194452) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114148.1 CDS mdoG NC_011094.1 1194706 1196259 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1194706..1196259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114149.1 CDS SeSA_A1218 NC_011094.1 1196252 1198795 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1196252..1198795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114150.1 CDS SeSA_A1219 NC_011094.1 1198893 1199096 D identified by match to protein family HMM PF07119; hypothetical protein 1198893..1199096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114151.1 CDS SeSA_A1220 NC_011094.1 1199097 1199471 R hypothetical protein complement(1199097..1199471) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114152.1 CDS SeSA_A1221 NC_011094.1 1199553 1200767 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1199553..1200767) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114153.1 CDS SeSA_A1222 NC_011094.1 1200922 1201842 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1200922..1201842) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114154.1 CDS SeSA_A1223 NC_011094.1 1202062 1203114 D identified by match to protein family HMM PF00581; hypothetical protein 1202062..1203114 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114155.1 CDS SeSA_A1224 NC_011094.1 1203166 1203741 R identified by match to protein family HMM PF04264; hypothetical protein complement(1203166..1203741) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114156.1 CDS SeSA_A1225 NC_011094.1 1203738 1204310 R identified by match to protein family HMM PF01292; hypothetical protein complement(1203738..1204310) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114157.1 CDS SeSA_A1226 NC_011094.1 1204321 1204524 D hypothetical protein 1204321..1204524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114158.1 CDS SeSA_A1227 NC_011094.1 1204573 1204686 R hypothetical protein complement(1204573..1204686) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114159.1 CDS solA NC_011094.1 1204727 1205845 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1204727..1205845) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114160.1 CDS bssS NC_011094.1 1205958 1206215 R 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssS complement(1205958..1206215) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114161.1 CDS SeSA_A1230 NC_011094.1 1206502 1206747 R identified by match to protein family HMM PF06183; DNA damage-inducible protein I complement(1206502..1206747) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114162.1 CDS pyrC NC_011094.1 1206821 1207867 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1206821..1207867) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114163.1 CDS SeSA_A1232 NC_011094.1 1207971 1208531 R identified by match to protein family HMM PF07273; hypothetical protein complement(1207971..1208531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114164.1 CDS grxB NC_011094.1 1208656 1209303 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1208656..1209303) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114165.1 CDS mdtH NC_011094.1 1209367 1210575 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1209367..1210575) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114166.1 CDS SeSA_A1235 NC_011094.1 1210812 1211396 D identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 1210812..1211396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114167.1 CDS SeSA_A1236 NC_011094.1 1211432 1212079 D identified by match to protein family HMM PF04337; hypothetical protein 1211432..1212079 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114168.1 CDS SeSA_A1237 NC_011094.1 1212081 1213004 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; virulence factor MviM-like protein 1212081..1213004 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114169.1 CDS mviN NC_011094.1 1213269 1214843 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1213269..1214843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114170.1 CDS SeSA_A1239 NC_011094.1 1214925 1215317 R identified by match to protein family HMM PF05130; flagella synthesis protein FlgN complement(1214925..1215317) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114171.1 CDS SeSA_A1240 NC_011094.1 1215352 1215645 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1215352..1215645) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114172.1 CDS flgA NC_011094.1 1215737 1216396 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1215737..1216396) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114173.1 CDS flgB NC_011094.1 1216553 1216969 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1216553..1216969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114174.1 CDS flgC NC_011094.1 1216973 1217377 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1216973..1217377 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114175.1 CDS flgD NC_011094.1 1217389 1218087 D 'acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production'; flagellar basal body rod modification protein 1217389..1218087 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114176.1 CDS flgE NC_011094.1 1218114 1219325 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1218114..1219325 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114177.1 CDS flgF NC_011094.1 1219346 1220101 D 'FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod'; flagellar basal body rod protein FlgF 1219346..1220101 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114178.1 CDS flgG NC_011094.1 1220115 1220897 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1220115..1220897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114179.1 CDS flgH NC_011094.1 1220984 1221649 D 'part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod'; flagellar basal body L-ring protein 1220984..1221649 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114180.1 CDS flgI NC_011094.1 1221661 1222758 D 'part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum'; flagellar basal body P-ring protein 1221661..1222758 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114181.1 CDS flgJ NC_011094.1 1222758 1223708 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1222758..1223708 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114182.1 CDS flgK NC_011094.1 1223773 1225434 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1223773..1225434 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114183.1 CDS flgL NC_011094.1 1225449 1226402 D 'with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes'; flagellar hook-associated protein FlgL 1225449..1226402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114184.1 CDS rne NC_011094.1 1226659 1229862 R 'bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase'; ribonuclease E complement(1226659..1229862) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114185.1 CDS SeSA_A1255 NC_011094.1 1230436 1231395 D 'catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA'; 23S rRNA pseudouridylate synthase C 1230436..1231395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114186.1 CDS SeSA_A1256 NC_011094.1 1231533 1232294 D hypothetical protein 1231533..1232294 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114187.1 CDS SeSA_A1257 NC_011094.1 1232497 1232721 D hypothetical protein 1232497..1232721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114188.1 CDS maf NC_011094.1 1232793 1233377 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1232793..1233377) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114189.1 CDS SeSA_A1260 NC_011094.1 1233575 1234096 D identified by match to protein family HMM PF02620; hypothetical protein 1233575..1234096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114190.1 CDS SeSA_A1262 NC_011094.1 1234082 1234486 R identified by glimmer; hypothetical protein complement(1234082..1234486) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114191.1 CDS plsX NC_011094.1 1234455 1235534 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1234455..1235534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114192.1 CDS fabH NC_011094.1 1235614 1236567 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1235614..1236567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114193.1 CDS fabD NC_011094.1 1236583 1237512 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1236583..1237512 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114194.1 CDS fabG NC_011094.1 1237525 1238259 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1237525..1238259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114195.1 CDS acpP NC_011094.1 1238415 1238651 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1238415..1238651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114196.1 CDS fabF NC_011094.1 1238737 1239978 D 'FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 1238737..1239978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114197.1 CDS SeSA_A1268 NC_011094.1 1240049 1240573 R identified by match to protein family HMM PF00419; fimbrial protein complement(1240049..1240573) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114198.1 CDS SeSA_A1269 NC_011094.1 1240588 1241109 R identified by match to protein family HMM PF00419; S-fimbrial adhesin protein SfaS complement(1240588..1241109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114199.1 CDS SeSA_A1270 NC_011094.1 1241122 1242120 R identified by match to protein family HMM PF00419; fimbrial protein complement(1241122..1242120) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114200.1 CDS SeSA_A1271 NC_011094.1 1242158 1244713 R identified by match to protein family HMM PF00577; outer membrane usher protein SfmD complement(1242158..1244713) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114201.1 CDS SeSA_A1272 NC_011094.1 1244737 1245414 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC complement(1244737..1245414) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114202.1 CDS SeSA_A1273 NC_011094.1 1245490 1246032 R identified by match to protein family HMM PF00419; fimbrial protein complement(1245490..1246032) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114203.1 CDS pabC NC_011094.1 1246447 1247256 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1246447..1247256 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114204.1 CDS SeSA_A1275 NC_011094.1 1247259 1248281 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1247259..1248281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114205.1 CDS tmk NC_011094.1 1248271 1248912 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1248271..1248912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114206.1 CDS SeSA_A1277 NC_011094.1 1248909 1249913 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1248909..1249913 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114207.1 CDS SeSA_A1278 NC_011094.1 1249924 1250721 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 1249924..1250721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114208.1 CDS ptsG NC_011094.1 1251016 1252449 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1251016..1252449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114209.1 CDS SeSA_A1280 NC_011094.1 1252534 1254708 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter complement(1252534..1254708) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114210.1 CDS SeSA_A1281 NC_011094.1 1255032 1255409 D identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 1255032..1255409 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114211.1 CDS SeSA_A1282 NC_011094.1 1255412 1255786 D identified by match to protein family HMM PF07233; outer membrane lipoprotein 1255412..1255786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114212.1 CDS SeSA_A1283 NC_011094.1 1255800 1256438 D identified by match to protein family HMM TIGR02722; hypothetical protein 1255800..1256438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114213.1 CDS thiK NC_011094.1 1256419 1257243 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1256419..1257243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114214.1 CDS nagZ NC_011094.1 1257254 1258279 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1257254..1258279 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114215.1 CDS SeSA_A1286 NC_011094.1 1258304 1258846 D identified by match to protein family HMM PF05728; hypothetical protein 1258304..1258846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114216.1 CDS ndh NC_011094.1 1259073 1260404 D identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; NADH dehydrogenase 1259073..1260404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114217.1 CDS SeSA_A1288 NC_011094.1 1260583 1261122 D identified by match to protein family HMM PF05433; hypothetical protein 1260583..1261122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114218.1 CDS SeSA_A1289 NC_011094.1 1261196 1261831 R identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein complement(1261196..1261831) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114219.1 CDS SeSA_A1290 NC_011094.1 1262073 1262330 D identified by match to protein family HMM PF07338; hypothetical protein 1262073..1262330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114220.1 CDS SeSA_A1291 NC_011094.1 1262427 1263392 R identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM domain/ErfK/YbiS/YcfS/YnhG family protein complement(1262427..1263392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114221.1 CDS mfd NC_011094.1 1263540 1266986 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1263540..1266986) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114222.1 CDS SeSA_A1293 NC_011094.1 1266992 1267150 D identified by glimmer; hypothetical protein 1266992..1267150 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114223.1 CDS lolC NC_011094.1 1267324 1268523 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1267324..1268523 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114224.1 CDS lolD NC_011094.1 1268516 1269217 D 'outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone'; lipoprotein transporter ATP-binding subunit 1268516..1269217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114225.1 CDS lolE NC_011094.1 1269217 1270461 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1269217..1270461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114226.1 CDS nagK NC_011094.1 1270490 1271401 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1270490..1271401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114227.1 CDS SeSA_A1298 NC_011094.1 1271420 1272241 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1271420..1272241 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114228.1 CDS potD NC_011094.1 1272323 1273369 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1272323..1273369) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114229.1 CDS potC NC_011094.1 1273394 1274173 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease complement(1273394..1274173) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114230.1 CDS SeSA_A1301 NC_011094.1 1274276 1274398 R identified by glimmer; hypothetical protein complement(1274276..1274398) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114231.1 CDS sifA NC_011094.1 1274489 1275499 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein complement(1274489..1275499) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114232.1 CDS SeSA_A1303 NC_011094.1 1275564 1275734 R hypothetical protein complement(1275564..1275734) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114233.1 CDS potB NC_011094.1 1275828 1276691 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter permease complement(1275828..1276691) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114234.1 CDS potA NC_011094.1 1276675 1277811 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1276675..1277811) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114235.1 CDS pepT NC_011094.1 1278062 1279291 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1278062..1279291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114236.1 CDS SeSA_A1308 NC_011094.1 1279720 1280841 R identified by match to protein family HMM PF08007; cupin family protein complement(1279720..1280841) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114237.1 CDS SeSA_A1309 NC_011094.1 1280922 1282385 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ complement(1280922..1282385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114238.1 CDS SeSA_A1310 NC_011094.1 1282385 1283059 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1282385..1283059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114239.1 CDS purB NC_011094.1 1283183 1284553 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1283183..1284553) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114240.1 CDS SeSA_A1312 NC_011094.1 1284557 1285204 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1284557..1285204) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114241.1 CDS mnmA NC_011094.1 1285285 1286391 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1285285..1286391) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114242.1 CDS SeSA_A1314 NC_011094.1 1286445 1286906 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(1286445..1286906) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114243.1 CDS SeSA_A1315 NC_011094.1 1286918 1287247 R hypothetical protein complement(1286918..1287247) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114244.1 CDS SeSA_A1316 NC_011094.1 1287244 1287981 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase E complement(1287244..1287981) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114245.1 CDS icd NC_011094.1 1288081 1289331 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1288081..1289331 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114246.1 CDS SeSA_A1318 NC_011094.1 1289495 1289623 D identified by glimmer; hypothetical protein 1289495..1289623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114247.1 CDS SeSA_A1319 NC_011094.1 1289777 1290901 D bacteriophage protein 1289777..1290901 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114249.1 CDS SeSA_A1321 NC_011094.1 1291174 1291335 R hypothetical protein complement(1291174..1291335) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114250.1 CDS SeSA_A1322 NC_011094.1 1292378 1293106 D identified by match to protein family HMM PF02917; pertussis toxin subunit 1 subfamily protein 1292378..1293106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114251.1 CDS SeSA_A1323 NC_011094.1 1293299 1293841 D identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein 1293299..1293841 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114252.1 CDS SeSA_A1324 NC_011094.1 1293989 1294366 R identified by match to protein family HMM PF07087; hypothetical protein complement(1293989..1294366) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114253.1 CDS SeSA_A1325 NC_011094.1 1294439 1295248 R identified by match to protein family HMM PF03372; cytolethal distending toxin B complement(1294439..1295248) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114254.1 CDS SeSA_A1326 NC_011094.1 1295746 1295910 D transposase 1295746..1295910 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114255.1 CDS SeSA_A1327 NC_011094.1 1296121 1296360 R identified by match to protein family HMM PF06183; hypothetical protein complement(1296121..1296360) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114256.1 CDS SeSA_A1328 NC_011094.1 1296551 1297072 R EnvE complement(1296551..1297072) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114257.1 CDS SeSA_A1329 NC_011094.1 1297489 1297701 R identified by match to protein family HMM PF00313; hypothetical protein complement(1297489..1297701) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114258.1 CDS SeSA_A1330 NC_011094.1 1297833 1298096 R virulence protein PagD complement(1297833..1298096) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114259.1 CDS SeSA_A1331 NC_011094.1 1298145 1298336 D hypothetical protein 1298145..1298336 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114260.1 CDS SeSA_A1332 NC_011094.1 1298395 1298523 D hypothetical protein 1298395..1298523 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114261.1 CDS SeSA_A1333 NC_011094.1 1298903 1299460 D identified by match to protein family HMM PF06316; outer membrane invasion protein 1298903..1299460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114262.1 CDS SeSA_A1336 NC_011094.1 1300697 1301041 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1300697..1301041) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114263.1 CDS SeSA_A1337 NC_011094.1 1301419 1301544 D hypothetical protein 1301419..1301544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114264.1 CDS SeSA_A1338 NC_011094.1 1301688 1301861 R hypothetical protein complement(1301688..1301861) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114265.1 CDS SeSA_A1339 NC_011094.1 1302178 1302648 D identified by match to protein family HMM PF00011; heat shock protein 1302178..1302648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114266.1 CDS SeSA_A1340 NC_011094.1 1302987 1304030 D hypothetical protein 1302987..1304030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114267.1 CDS SeSA_A1341 NC_011094.1 1304113 1304643 R identified by match to protein family HMM PF01292; cytochrome B561 complement(1304113..1304643) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114268.2 CDS SeSA_A1342 NC_011094.1 1304792 1305106 R hypothetical protein complement(1304792..1305106) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114269.1 CDS SeSA_A1343 NC_011094.1 1305198 1305356 R identified by glimmer; hypothetical protein complement(1305198..1305356) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114270.1 CDS SeSA_A1344 NC_011094.1 1305502 1305642 R identified by glimmer; hypothetical protein complement(1305502..1305642) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114271.1 CDS SeSA_A1345 NC_011094.1 1305788 1307422 D identified by match to protein family HMM PF00496; nickel ABC transporter substrate-binding protein 1305788..1307422 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114272.1 CDS SeSA_A1346 NC_011094.1 1307422 1308396 D identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter permease 1307422..1308396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114273.1 CDS SeSA_A1347 NC_011094.1 1308386 1309198 D identified by match to protein family HMM PF00528; nickel/di-oligopepetide ABC transporter permease subunit 1308386..1309198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114274.1 CDS SeSA_A1348 NC_011094.1 1309192 1309989 D identified by match to protein family HMM PF00005; nickel/di-oligopepetide ABC transporter ATP binding subunit 1309192..1309989 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114275.1 CDS SeSA_A1349 NC_011094.1 1309983 1310573 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1309983..1310573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114276.1 CDS SeSA_A1350 NC_011094.1 1310655 1311788 R identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS complement(1310655..1311788) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114277.1 CDS SeSA_A1351 NC_011094.1 1311982 1312308 D identified by match to protein family HMM PF03860; ferredoxin 1311982..1312308 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114278.1 CDS SeSA_A1353 NC_011094.1 1312502 1313152 D identified by match to protein family HMM PF09223; hypothetical protein 1312502..1313152 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114279.1 CDS SeSA_A1354 NC_011094.1 1313180 1314049 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1313180..1314049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114280.1 CDS SeSA_A1355 NC_011094.1 1314194 1314787 D identified by match to protein family HMM PF00196; regulatory protein 1314194..1314787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114281.1 CDS SeSA_A1356 NC_011094.1 1314856 1315704 D identified by match to protein family HMM PF00376; transcriptional regulator 1314856..1315704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114282.2 CDS SeSA_A1357 NC_011094.1 1315959 1316207 R hypothetical protein complement(1315959..1316207) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114283.1 CDS SeSA_A1358 NC_011094.1 1316523 1317068 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1316523..1317068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114284.1 CDS SeSA_A1359 NC_011094.1 1317265 1317903 D identified by match to protein family HMM PF01810; leucine export protein LeuE 1317265..1317903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114285.1 CDS SeSA_A1360 NC_011094.1 1318076 1318438 D identified by match to protein family HMM PF09313; hypothetical protein 1318076..1318438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114286.1 CDS SeSA_A1361 NC_011094.1 1318441 1318623 D identified by match to protein family HMM PF08956; hypothetical protein 1318441..1318623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114287.1 CDS SeSA_A1362 NC_011094.1 1318847 1319494 D hypothetical protein 1318847..1319494 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114288.1 CDS SeSA_A1363 NC_011094.1 1319615 1319800 D hypothetical protein 1319615..1319800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114289.1 CDS SeSA_A1365 NC_011094.1 1319808 1320056 D identified by match to protein family HMM PF04226; hypothetical protein 1319808..1320056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114291.1 CDS SeSA_A1367 NC_011094.1 1320489 1320740 D identified by match to protein family HMM PF03891; hemolysin 1320489..1320740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114292.1 CDS SeSA_A1368 NC_011094.1 1320809 1321120 D hypothetical protein 1320809..1321120 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114293.1 CDS SeSA_A1369 NC_011094.1 1321106 1321453 R identified by match to protein family HMM PF04343; hypothetical protein complement(1321106..1321453) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114294.1 CDS SeSA_A1370 NC_011094.1 1321572 1322756 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN complement(1321572..1322756) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119768.1 CDS SeSA_A1371 NC_011094.1 1322857 1323651 D AraC family transcriptional regulator 1322857..1323651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114295.1 CDS SeSA_A1372 NC_011094.1 1323631 1324077 R identified by match to protein family HMM PF04284; hypothetical protein complement(1323631..1324077) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114296.1 CDS SeSA_A1373 NC_011094.1 1324079 1324216 D hypothetical protein 1324079..1324216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114297.1 CDS SeSA_A1374 NC_011094.1 1324387 1324914 R identified by match to protein family HMM PF04073; prolyl-tRNA synthetase complement(1324387..1324914) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114298.1 CDS SeSA_A1375 NC_011094.1 1324955 1326448 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein complement(1324955..1326448) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114299.1 CDS SeSA_A1376 NC_011094.1 1326836 1326970 D hypothetical protein 1326836..1326970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114300.1 CDS SeSA_A1377 NC_011094.1 1327098 1328384 R identified by match to protein family HMM PF04285; hypothetical protein complement(1327098..1328384) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114301.1 CDS SeSA_A1378 NC_011094.1 1328385 1328504 D identified by glimmer; hypothetical protein 1328385..1328504 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114302.1 CDS SeSA_A1379 NC_011094.1 1328507 1330441 R identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase, PrkA complement(1328507..1330441) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114303.2 CDS SeSA_A1380 NC_011094.1 1330868 1331614 D identified by match to protein family HMM PF06629; MltA-interacting protein 1330868..1331614 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114304.1 CDS SeSA_A1381 NC_011094.1 1331904 1333100 D chondroitin sulfate/heparin utilization regulation protein 1331904..1333100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114305.1 CDS SeSA_A1382 NC_011094.1 1333206 1334054 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family protein 1333206..1334054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114306.1 CDS SeSA_A1383 NC_011094.1 1334153 1335037 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(1334153..1335037) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114307.1 CDS gapA NC_011094.1 1335366 1336361 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase complement(1335366..1336361) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114308.1 CDS msrB NC_011094.1 1336703 1337116 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1336703..1337116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114309.1 CDS SeSA_A1386 NC_011094.1 1337158 1337436 D identified by match to protein family HMM PF07023; general negative regulator of transcription subunit 1 1337158..1337436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114310.1 CDS SeSA_A1387 NC_011094.1 1337787 1338443 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1337787..1338443) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114311.1 CDS ansA NC_011094.1 1338470 1339486 R converts asparagine to aspartate and ammonia; asparaginase complement(1338470..1339486) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114312.1 CDS sppA NC_011094.1 1339582 1341438 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1339582..1341438) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114313.1 CDS SeSA_A1390 NC_011094.1 1341612 1342163 D identified by match to protein family HMM PF00881; hypothetical protein 1341612..1342163 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114314.1 CDS selD NC_011094.1 1342281 1343324 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1342281..1343324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114315.1 CDS topB NC_011094.1 1343329 1345278 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1343329..1345278 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114316.1 CDS gdhA NC_011094.1 1345308 1346651 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1345308..1346651) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114317.1 CDS SeSA_A1394 NC_011094.1 1346890 1347165 D identified by match to protein family HMM PF07383; hypothetical protein 1346890..1347165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114318.1 CDS SeSA_A1395 NC_011094.1 1347125 1347541 R identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1347125..1347541) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114319.1 CDS xth NC_011094.1 1347614 1348420 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1347614..1348420) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114320.1 CDS SeSA_A1397 NC_011094.1 1348555 1348734 D hypothetical protein 1348555..1348734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114321.1 CDS SeSA_A1398 NC_011094.1 1348866 1350092 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1348866..1350092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114322.1 CDS astA NC_011094.1 1350083 1351117 D identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1350083..1351117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114323.1 CDS astD NC_011094.1 1351114 1352592 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1351114..1352592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114324.1 CDS astB NC_011094.1 1352589 1353932 D 'catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation'; succinylarginine dihydrolase 1352589..1353932 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114325.1 CDS astE NC_011094.1 1353925 1354893 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1353925..1354893 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114327.1 CDS spy NC_011094.1 1355229 1355714 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1355229..1355714 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114328.1 CDS SeSA_A1405 NC_011094.1 1355789 1356670 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1355789..1356670) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114329.1 CDS nadE NC_011094.1 1356791 1357618 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1356791..1357618) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114330.1 CDS SeSA_A1406 NC_011094.1 1357571 1357705 D identified by glimmer; hypothetical protein 1357571..1357705 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114331.1 CDS osmE NC_011094.1 1357837 1358178 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1357837..1358178 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114332.1 CDS chbB NC_011094.1 1358479 1358799 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1358479..1358799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114333.1 CDS chbC NC_011094.1 1358882 1360240 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1358882..1360240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114334.1 CDS SeSA_A1411 NC_011094.1 1360291 1360638 D 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1360291..1360638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114335.1 CDS SeSA_A1412 NC_011094.1 1360649 1361491 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1360649..1361491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114336.1 CDS SeSA_A1413 NC_011094.1 1361616 1362971 D identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1361616..1362971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114337.1 CDS SeSA_A1414 NC_011094.1 1362984 1363742 D identified by match to protein family HMM PF04794; hypothetical protein 1362984..1363742 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114338.1 CDS katE NC_011094.1 1363786 1366038 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1363786..1366038) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114339.1 CDS SeSA_A1416 NC_011094.1 1366255 1366497 D cell division modulator 1366255..1366497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114340.1 CDS SeSA_A1417 NC_011094.1 1366600 1367991 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(1366600..1367991) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114341.1 CDS SeSA_A1418 NC_011094.1 1368128 1368727 R identified by match to protein family HMM PF04307; hypothetical protein complement(1368128..1368727) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114342.1 CDS SeSA_A1419 NC_011094.1 1368865 1369533 R 'YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate'; 2-deoxyglucose-6-phosphatase complement(1368865..1369533) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114343.1 CDS SeSA_A1420 NC_011094.1 1369682 1370218 D hypothetical protein 1369682..1370218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114344.1 CDS SeSA_A1421 NC_011094.1 1370261 1371121 R identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase complement(1370261..1371121) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114345.1 CDS SeSA_A1422 NC_011094.1 1371228 1371518 R hypothetical protein complement(1371228..1371518) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114346.1 CDS pfkB NC_011094.1 1371615 1372547 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase complement(1371615..1372547) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114347.1 CDS SeSA_A1424 NC_011094.1 1372869 1373594 D identified by match to protein family HMM PF04338; outer membrane protein 1372869..1373594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114348.1 CDS SeSA_A1425 NC_011094.1 1373643 1374602 R outer membrane protein complement(1373643..1374602) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114349.1 CDS SeSA_A1427 NC_011094.1 1375056 1375910 D identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1375056..1375910 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114350.1 CDS thrS NC_011094.1 1376170 1378098 D 'catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; threonyl-tRNA synthetase 1376170..1378098 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114351.1 CDS infC NC_011094.1 1378210 1378644 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1378210..1378644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114352.1 CDS rpmI NC_011094.1 1378740 1378937 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1378740..1378937 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114353.1 CDS rplT NC_011094.1 1378988 1379344 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1378988..1379344 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114354.1 CDS pheS NC_011094.1 1379646 1380629 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily'; phenylalanyl-tRNA synthetase subunit alpha 1379646..1380629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114355.1 CDS pheT NC_011094.1 1380645 1383032 D 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily'; phenylalanyl-tRNA synthetase subunit beta 1380645..1383032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114356.1 CDS ihfA NC_011094.1 1383037 1383336 D 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit alpha 1383037..1383336 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114357.1 CDS SeSA_A1435 NC_011094.1 1383539 1384519 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1383539..1384519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114358.1 CDS btuE NC_011094.1 1384611 1385162 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1384611..1385162 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114359.1 CDS SeSA_A1437 NC_011094.1 1385174 1385911 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1385174..1385911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114360.1 CDS SeSA_A1438 NC_011094.1 1385988 1386452 D identified by match to protein family HMM PF00877; NlpC (ORF-17) 1385988..1386452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114361.1 CDS SeSA_A1439 NC_011094.1 1386766 1387479 D hypothetical protein 1386766..1387479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114362.1 CDS SeSA_A1440 NC_011094.1 1387541 1388983 D identified by match to protein family HMM PF02696; hypothetical protein 1387541..1388983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114363.1 CDS SeSA_A1441 NC_011094.1 1389019 1389210 R hypothetical protein complement(1389019..1389210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114364.1 CDS aroH NC_011094.1 1389367 1390413 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1389367..1390413) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114365.1 CDS SeSA_A1443 NC_011094.1 1390569 1391402 R identified by match to protein family HMM PF03618; hypothetical protein complement(1390569..1391402) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114366.1 CDS ppsA NC_011094.1 1391739 1394117 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1391739..1394117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114367.1 CDS SeSA_A1446 NC_011094.1 1394159 1395799 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1394159..1395799) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114368.1 CDS SeSA_A1447 NC_011094.1 1395889 1396182 R 4Fe-4S ferredoxin complement(1395889..1396182) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114369.1 CDS SeSA_A1448 NC_011094.1 1396179 1397465 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein complement(1396179..1397465) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114370.1 CDS SeSA_A1449 NC_011094.1 1397522 1398457 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1397522..1398457) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114371.1 CDS ydiQ NC_011094.1 1398479 1399243 R 'YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain'; electron transfer flavoprotein YdiQ complement(1398479..1399243) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114372.1 CDS SeSA_A1451 NC_011094.1 1399706 1400596 D identified by match to protein family HMM PF00165; match to protein family HMM PF07883; transcriptional regulator, AraC family protein 1399706..1400596 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114373.1 CDS SeSA_A1452 NC_011094.1 1400672 1401823 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase complement(1400672..1401823) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114374.1 CDS SeSA_A1453 NC_011094.1 1401837 1403432 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(1401837..1403432) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114375.1 CDS aroD NC_011094.1 1403586 1404344 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1403586..1404344) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114376.1 CDS SeSA_A1455 NC_011094.1 1404389 1405255 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1404389..1405255) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114377.1 CDS SeSA_A1456 NC_011094.1 1405322 1406557 R identified by match to protein family HMM PF07690; transporter major facilitator family protein complement(1405322..1406557) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114378.1 CDS SeSA_A1457 NC_011094.1 1406921 1408162 R identified by match to protein family HMM PF07690; inner membrane transport protein YdiM complement(1406921..1408162) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114379.1 CDS SeSA_A1458 NC_011094.1 1408272 1408631 R identified by match to protein family HMM PF08965; hypothetical protein complement(1408272..1408631) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114380.1 CDS SeSA_A1460 NC_011094.1 1409090 1410208 R 'YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function'; inner membrane protein complement(1409090..1410208) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114381.1 CDS SeSA_A1461 NC_011094.1 1410473 1413529 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase domain-containing protein 1410473..1413529 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114382.1 CDS SeSA_A1462 NC_011094.1 1413526 1413936 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1413526..1413936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114383.1 CDS SeSA_A1465 NC_011094.1 1414511 1415857 R identified by match to protein family HMM PF00375; transporter dicarboxylate/amino acid:cation (na+ or H+) symporter (daacs) family protein complement(1414511..1415857) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114384.1 CDS sufA NC_011094.1 1416284 1416652 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1416284..1416652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114385.1 CDS sufB NC_011094.1 1416661 1418148 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1416661..1418148 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114386.1 CDS sufC NC_011094.1 1418165 1418911 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1418165..1418911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114387.1 CDS sufD NC_011094.1 1418886 1420157 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1418886..1420157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114388.1 CDS SeSA_A1470 NC_011094.1 1420154 1421374 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1420154..1421374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114389.1 CDS SeSA_A1471 NC_011094.1 1421387 1421803 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1421387..1421803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114390.1 CDS SeSA_A1472 NC_011094.1 1421958 1422959 D identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1421958..1422959 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114391.1 CDS SeSA_A1473 NC_011094.1 1423025 1423264 R identified by match to protein family HMM PF04728; hypothetical protein complement(1423025..1423264) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114392.1 CDS lpp NC_011094.1 1423347 1423583 R identified by match to protein family HMM PF04728; major outer membrane lipoprotein complement(1423347..1423583) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114393.1 CDS pykF NC_011094.1 1423894 1425306 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1423894..1425306) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114394.1 CDS SeSA_A1476 NC_011094.1 1425708 1427051 R identified by match to protein family HMM PF00324; amino acid transporter complement(1425708..1427051) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114395.1 CDS SeSA_A1477 NC_011094.1 1427073 1427966 R identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; proline iminopeptidase like protein complement(1427073..1427966) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114396.1 CDS SeSA_A1478 NC_011094.1 1428025 1428762 R identified by match to protein family HMM PF07090; hypothetical protein complement(1428025..1428762) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114397.1 CDS SeSA_A1479 NC_011094.1 1428774 1430000 R identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein DeoR family protein complement(1428774..1430000) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114398.1 CDS SeSA_A1480 NC_011094.1 1430323 1433385 R identified by match to protein family HMM PF01568; match to protein family HMM PF04879; tetrathionate reductase complex subunit A complement(1430323..1433385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114399.1 CDS SeSA_A1481 NC_011094.1 1433378 1434400 R identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C complement(1433378..1434400) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114400.1 CDS SeSA_A1482 NC_011094.1 1434401 1435135 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B complement(1434401..1435135) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114401.1 CDS SeSA_A1483 NC_011094.1 1435347 1437095 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1435347..1437095 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114402.1 CDS SeSA_A1484 NC_011094.1 1437052 1437690 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1437052..1437690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114403.1 CDS SeSA_A1485 NC_011094.1 1437788 1438000 D hypothetical protein 1437788..1438000 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114404.1 CDS SeSA_A1486 NC_011094.1 1438096 1439055 R identified by match to protein family HMM PF04463; match to protein family HMM PF08349; pathogenicity island protein complement(1438096..1439055) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114405.1 CDS SeSA_A1488 NC_011094.1 1439227 1439955 R identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein complement(1439227..1439955) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114406.1 CDS SeSA_A1489 NC_011094.1 1440134 1440772 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; EsrB complement(1440134..1440772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114407.1 CDS SeSA_A1490 NC_011094.1 1440803 1443565 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component complement(1440803..1443565) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114408.1 CDS SeSA_A1491 NC_011094.1 1444369 1445862 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family protein 1444369..1445862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114409.1 CDS SeSA_A1492 NC_011094.1 1445855 1447054 D identified by match to protein family HMM TIGR02500; type III secretion apparatus protein, YscD/HrpQ family protein 1445855..1447054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114410.1 CDS SeSA_A1493 NC_011094.1 1447062 1447304 D identified by match to protein family HMM TIGR02501; type III secretion system protein, YseE family protein 1447062..1447304 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114411.1 CDS SeSA_A1494 NC_011094.1 1447839 1448429 D identified by match to protein family HMM PF03433; secretion system effector protein SseB 1447839..1448429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114412.1 CDS SeSA_A1495 NC_011094.1 1448384 1448899 D identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1448384..1448899 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114413.1 CDS SeSA_A1496 NC_011094.1 1448902 1450356 D identified by match to protein family HMM PF04888; translocation machinery component 1448902..1450356 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114414.2 CDS SeSA_A1497 NC_011094.1 1450372 1450959 D pathogenicity island 2 effector protein SseD 1450372..1450959 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114415.2 CDS SeSA_A1498 NC_011094.1 1450962 1451378 D pathogenicity island 2 effector protein SseE 1450962..1451378 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114416.1 CDS SeSA_A1499 NC_011094.1 1451436 1451864 D identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1451436..1451864 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114417.1 CDS SeSA_A1500 NC_011094.1 1451880 1452662 D secretion system effector protein SseF 1451880..1452662 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114418.1 CDS SeSA_A1501 NC_011094.1 1452659 1453348 D secretion system effector protein SseG 1452659..1453348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114419.1 CDS eprI NC_011094.1 1453441 1453656 D identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1453441..1453656 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114420.2 CDS SeSA_A1503 NC_011094.1 1453697 1453924 D identified by match to protein family HMM TIGR02498; type III secretion system protein SsaH 1453697..1453924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114421.1 CDS SeSA_A1504 NC_011094.1 1453921 1454184 D identified by match to protein family HMM PF09525; match to protein family HMM TIGR02497; type III secretion system apparatus protein 1453921..1454184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114422.1 CDS SeSA_A1505 NC_011094.1 1454181 1454930 D identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family protein 1454181..1454930 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114423.1 CDS SeSA_A1506 NC_011094.1 1455224 1455496 D secretion system apparatus 1455224..1455496 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114424.1 CDS SeSA_A1507 NC_011094.1 1455493 1456167 D identified by match to protein family HMM TIGR02499; type III secretion apparatus protein, HrpE/YscL family protein 1455493..1456167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114425.1 CDS SeSA_A1508 NC_011094.1 1456157 1457149 D identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1456157..1457149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114426.1 CDS SeSA_A1509 NC_011094.1 1457207 1457575 D secretion system apparatus protein SsaM 1457207..1457575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114427.1 CDS SeSA_A1510 NC_011094.1 1457560 1459605 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1457560..1459605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114428.1 CDS SeSA_A1511 NC_011094.1 1459595 1460896 D identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546; type III secretion system ATPase 1459595..1460896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114429.1 CDS SeSA_A1512 NC_011094.1 1460908 1461276 D secretion system apparatus protein SsaO 1460908..1461276 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114430.1 CDS SeSA_A1513 NC_011094.1 1461290 1461631 D secretion system apparatus protein SsaP 1461290..1461631 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114431.1 CDS epaO NC_011094.1 1461612 1462580 D identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1461612..1462580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114432.1 CDS epaP NC_011094.1 1462648 1463295 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1462648..1463295 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114433.2 CDS SeSA_A1516 NC_011094.1 1463292 1463558 D secretion system apparatus protein SsaS 1463292..1463558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114434.1 CDS epaR NC_011094.1 1463559 1464338 D identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1463559..1464338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114435.1 CDS SeSA_A1518 NC_011094.1 1464335 1465393 D 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'; secretion system apparatus protein SsaU 1464335..1465393 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114436.1 CDS SeSA_A1521 NC_011094.1 1465876 1467249 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1465876..1467249) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114437.1 CDS ribE NC_011094.1 1467466 1468107 D 'catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine'; riboflavin synthase subunit alpha 1467466..1468107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114438.1 CDS cfa NC_011094.1 1468149 1469297 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1468149..1469297) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114439.1 CDS SeSA_A1524 NC_011094.1 1469587 1470792 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1469587..1470792) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114440.1 CDS SeSA_A1525 NC_011094.1 1470905 1471837 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1470905..1471837 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114441.1 CDS purR NC_011094.1 1471834 1472859 R 'binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers'; DNA-binding transcriptional repressor PurR complement(1471834..1472859) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114442.1 CDS SeSA_A1527 NC_011094.1 1473327 1473908 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1473327..1473908) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114443.1 CDS SeSA_A1528 NC_011094.1 1474035 1474856 R identified by match to protein family HMM PF00877; NlpC/P60 family protein complement(1474035..1474856) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114444.1 CDS SeSA_A1529 NC_011094.1 1475192 1475539 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1475192..1475539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114445.1 CDS SeSA_A1530 NC_011094.1 1475490 1475615 R identified by glimmer; hypothetical protein complement(1475490..1475615) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114446.1 CDS rnt NC_011094.1 1475617 1476264 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1475617..1476264) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114447.1 CDS gloA NC_011094.1 1476365 1476772 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1476365..1476772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114448.1 CDS nemA NC_011094.1 1476841 1477938 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1476841..1477938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114449.1 CDS SeSA_A1534 NC_011094.1 1477997 1478596 R identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein complement(1477997..1478596) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114450.1 CDS SeSA_A1535 NC_011094.1 1478786 1478938 D hypothetical protein 1478786..1478938 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114451.1 CDS SeSA_A1536 NC_011094.1 1478989 1479885 D identified by match to protein family HMM PF00248; oxidoreductase YdhF 1478989..1479885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114452.1 CDS sodC NC_011094.1 1479965 1480486 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1479965..1480486 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114453.1 CDS SeSA_A1538 NC_011094.1 1480462 1482501 R identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein complement(1480462..1482501) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114454.1 CDS SeSA_A1539 NC_011094.1 1482501 1483361 R identified by match to protein family HMM PF00529; auxiliary transport protein, membrane fusion protein (MFP) family protein complement(1482501..1483361) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114455.1 CDS SeSA_A1540 NC_011094.1 1483364 1483555 R identified by match to protein family HMM PF07869; hypothetical protein complement(1483364..1483555) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114456.1 CDS SeSA_A1541 NC_011094.1 1483795 1484235 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1483795..1484235 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114457.1 CDS SeSA_A1542 NC_011094.1 1484283 1484750 R identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp complement(1484283..1484750) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114458.1 CDS anmK NC_011094.1 1485023 1486144 D 'catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling'; anhydro-N-acetylmuramic acid kinase 1485023..1486144 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114459.1 CDS SeSA_A1544 NC_011094.1 1486238 1486561 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1486238..1486561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114460.1 CDS pdxH NC_011094.1 1486620 1487276 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1486620..1487276 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114461.1 CDS tyrS NC_011094.1 1487403 1488677 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1487403..1488677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114462.1 CDS SeSA_A1547 NC_011094.1 1488737 1489597 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1488737..1489597 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114463.1 CDS gst NC_011094.1 1489656 1490261 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase complement(1489656..1490261) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114464.1 CDS tppB NC_011094.1 1490366 1491871 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease complement(1490366..1491871) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114465.1 CDS SeSA_A1550 NC_011094.1 1492050 1492217 D identified by glimmer; hypothetical protein 1492050..1492217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114466.1 CDS nth NC_011094.1 1492473 1493108 R 'DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines'; endonuclease III complement(1492473..1493108) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114467.1 CDS SeSA_A1552 NC_011094.1 1493108 1493800 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1493108..1493800) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114468.1 CDS SeSA_A1553 NC_011094.1 1493803 1494423 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1493803..1494423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114469.1 CDS rnfD NC_011094.1 1494427 1495485 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(1494427..1495485) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114470.1 CDS SeSA_A1555 NC_011094.1 1495486 1497684 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1495486..1497684) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114471.1 CDS rnfB NC_011094.1 1497677 1498255 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1497677..1498255) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114472.1 CDS rnfA NC_011094.1 1498255 1498836 R identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E complement(1498255..1498836) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114473.1 CDS SeSA_A1558 NC_011094.1 1498913 1499386 R hypothetical protein complement(1498913..1499386) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114474.1 CDS SeSA_A1559 NC_011094.1 1499442 1499657 R 'YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes'; oriC-binding nucleoid-associated protein complement(1499442..1499657) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114475.1 CDS SeSA_A1560 NC_011094.1 1500289 1501329 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1500289..1501329 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114476.1 CDS add NC_011094.1 1501404 1502405 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1501404..1502405) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114477.1 CDS SeSA_A1562 NC_011094.1 1502619 1503791 R identified by match to protein family HMM PF00155; protein MalY complement(1502619..1503791) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114478.1 CDS malX NC_011094.1 1503801 1505393 R phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; PTS system maltose and glucose-specific transporter subunits IICB complement(1503801..1505393) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114479.1 CDS SeSA_A1564 NC_011094.1 1505566 1506594 D regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 1505566..1506594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114480.1 CDS SeSA_A1565 NC_011094.1 1506652 1508160 R identified by match to protein family HMM PF06097; hypothetical protein complement(1506652..1508160) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114481.1 CDS manA NC_011094.1 1508263 1509438 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(1508263..1509438) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114482.1 CDS SeSA_A1567 NC_011094.1 1509638 1511284 D identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1509638..1511284 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114483.1 CDS fumC NC_011094.1 1511452 1512855 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1511452..1512855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114484.1 CDS tus NC_011094.1 1512852 1513781 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1512852..1513781) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114485.1 CDS SeSA_A1570 NC_011094.1 1513857 1515158 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB complement(1513857..1515158) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114486.1 CDS SeSA_A1571 NC_011094.1 1515270 1516970 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein complement(1515270..1516970) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114487.1 CDS SeSA_A1572 NC_011094.1 1517129 1518271 R identified by match to protein family HMM PF00267; outer membrane protein N complement(1517129..1518271) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114488.1 CDS SeSA_A1574 NC_011094.1 1518536 1518664 R hypothetical protein complement(1518536..1518664) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114489.1 CDS SeSA_A1575 NC_011094.1 1518750 1519481 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1518750..1519481) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114490.1 CDS SeSA_A1576 NC_011094.1 1519608 1519943 D identified by match to protein family HMM PF06942; GlpM family protein 1519608..1519943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114491.1 CDS SeSA_A1577 NC_011094.1 1520005 1521387 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(1520005..1521387) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114492.1 CDS SeSA_A1578 NC_011094.1 1521686 1522630 R identified by match to protein family HMM PF07338; hypothetical protein complement(1521686..1522630) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114493.1 CDS pntA NC_011094.1 1523157 1524686 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1523157..1524686 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114494.1 CDS pntB NC_011094.1 1524697 1526085 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1524697..1526085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114495.1 CDS tqsA NC_011094.1 1526260 1527294 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transporter complement(1526260..1527294) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114496.1 CDS SeSA_A1582 NC_011094.1 1527463 1527600 D hypothetical protein 1527463..1527600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114497.1 CDS SeSA_A1583 NC_011094.1 1527712 1528074 D 'with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtJ 1527712..1528074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114498.1 CDS SeSA_A1584 NC_011094.1 1528061 1528390 D 'with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtI 1528061..1528390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114499.1 CDS SeSA_A1585 NC_011094.1 1528430 1529251 R identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap complement(1528430..1529251) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114500.1 CDS SeSA_A1586 NC_011094.1 1529351 1529470 R identified by glimmer; hypothetical protein complement(1529351..1529470) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114501.1 CDS SeSA_A1587 NC_011094.1 1529520 1529768 R required for growth and survival under moderately acid conditions; acid shock protein complement(1529520..1529768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114502.1 CDS SeSA_A1588 NC_011094.1 1530163 1531416 R identified by match to protein family HMM PF07690; inner membrane transport protein YnfM complement(1530163..1531416) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114503.1 CDS SeSA_A1589 NC_011094.1 1531536 1532435 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1531536..1532435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114504.1 CDS mic NC_011094.1 1532563 1533783 D identified by match to protein family HMM PF00480; transcriptional regulator Mic 1532563..1533783 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114505.1 CDS bioD2 NC_011094.1 1533909 1534604 D 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 1533909..1534604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114506.1 CDS SeSA_A1592 NC_011094.1 1534560 1535849 R identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB complement(1534560..1535849) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114507.1 CDS SeSA_A1593 NC_011094.1 1535985 1537133 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein opuBA complement(1535985..1537133) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114508.1 CDS SeSA_A1594 NC_011094.1 1537133 1537780 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1537133..1537780) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114509.1 CDS SeSA_A1595 NC_011094.1 1537790 1538692 R identified by match to protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein complement(1537790..1538692) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114510.1 CDS SeSA_A1596 NC_011094.1 1538721 1539431 R identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(1538721..1539431) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114511.1 CDS SeSA_A1597 NC_011094.1 1539736 1540350 R 'binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane'; twin-argninine leader-binding protein DmsD complement(1539736..1540350) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114512.1 CDS dmsC NC_011094.1 1540393 1541250 R identified by match to protein family HMM PF04976; dmso reductase anchor subunit complement(1540393..1541250) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114513.1 CDS dmsB_2 NC_011094.1 1541252 1541869 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit complement(1541252..1541869) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114514.1 CDS SeSA_A1600 NC_011094.1 1541880 1544315 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1541880..1544315) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114515.1 CDS SeSA_A1601 NC_011094.1 1544414 1546852 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(1544414..1546852) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114516.1 CDS SeSA_A1602 NC_011094.1 1547009 1547314 R identified by match to protein family HMM PF06649; outer membrane protein complement(1547009..1547314) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114517.1 CDS SeSA_A1603 NC_011094.1 1547421 1548131 D identified by match to protein family HMM PF06788; hypothetical protein 1547421..1548131 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114518.1 CDS speG NC_011094.1 1548172 1548732 R identified by match to protein family HMM PF00583; diamine N-acetyltransferase complement(1548172..1548732) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114519.1 CDS SeSA_A1605 NC_011094.1 1548768 1549109 R identified by match to protein family HMM PF06932; hypothetical protein complement(1548768..1549109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114520.1 CDS SeSA_A1606 NC_011094.1 1549262 1549588 D identified by match to protein family HMM PF02694; hypothetical protein 1549262..1549588 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114521.1 CDS SeSA_A1607 NC_011094.1 1549710 1550924 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1549710..1550924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114522.1 CDS SeSA_A1608 NC_011094.1 1550935 1551954 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; dehydrogenase 1550935..1551954 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114523.1 CDS SeSA_A1609 NC_011094.1 1552047 1553387 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1552047..1553387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114525.1 CDS SeSA_A1610 NC_011094.1 1553531 1554997 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1553531..1554997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114526.1 CDS SeSA_A1612 NC_011094.1 1555064 1555267 R identified by match to protein family HMM TIGR03318; selenium-binding protein YdfZ complement(1555064..1555267) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114527.1 CDS SeSA_A1613 NC_011094.1 1555448 1556134 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator, GntR family protein complement(1555448..1556134) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114528.1 CDS SeSA_A1614 NC_011094.1 1556264 1557010 R 'NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine'; 3-hydroxy acid dehydrogenase complement(1556264..1557010) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114529.1 CDS SeSA_A1615 NC_011094.1 1557149 1559191 D identified by match to protein family HMM PF01432; dipeptidyl carboxypeptidase II 1557149..1559191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114530.1 CDS SeSA_A1616 NC_011094.1 1559536 1559718 D hypothetical protein 1559536..1559718 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114531.1 CDS SeSA_A1617 NC_011094.1 1559838 1560365 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(1559838..1560365) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114532.1 CDS SeSA_A1618 NC_011094.1 1560792 1561184 D identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1560792..1561184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114533.1 CDS SeSA_A1619 NC_011094.1 1561244 1561387 D identified by glimmer; hypothetical protein 1561244..1561387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114534.1 CDS SeSA_A1620 NC_011094.1 1561533 1561655 R hypothetical protein complement(1561533..1561655) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114535.1 CDS SeSA_A1621 NC_011094.1 1561875 1563062 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE complement(1561875..1563062) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114536.1 CDS SeSA_A1622 NC_011094.1 1563290 1564192 D identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1563290..1564192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114537.1 CDS SeSA_A1623 NC_011094.1 1564311 1564526 R hypothetical protein complement(1564311..1564526) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114538.1 CDS SeSA_A1624 NC_011094.1 1564555 1564938 R 'transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF'; DNA-binding transcriptional activator MarA complement(1564555..1564938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114539.1 CDS marR NC_011094.1 1564958 1565392 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1564958..1565392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114540.1 CDS SeSA_A1626 NC_011094.1 1565651 1566316 D 'protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function'; multiple drug resistance protein MarC 1565651..1566316 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114541.1 CDS SeSA_A1627 NC_011094.1 1566363 1567553 R identified by match to protein family HMM PF07690; sugar efflux transporter complement(1566363..1567553) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114542.1 CDS SeSA_A1628 NC_011094.1 1567669 1568541 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain complement(1567669..1568541) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114543.1 CDS SeSA_A1629 NC_011094.1 1568644 1570032 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1568644..1570032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114544.1 CDS SeSA_A1630 NC_011094.1 1570105 1571031 D catalyzes the formation of glutamate from glutamine; glutaminase 1570105..1571031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114545.1 CDS SeSA_A1631 NC_011094.1 1571031 1571390 D hypothetical protein 1571031..1571390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119769.1 CDS SeSA_A1632 NC_011094.1 1571613 1572560 D hypothetical protein 1571613..1572560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114546.1 CDS SeSA_A1633 NC_011094.1 1572616 1573143 R outer membrane protein complement(1572616..1573143) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114547.1 CDS SeSA_A1634 NC_011094.1 1573874 1574992 D identified by match to protein family HMM PF00267; outer membrane protein N 1573874..1574992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114548.1 CDS hypA NC_011094.1 1575133 1575474 R identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA complement(1575133..1575474) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114549.1 CDS SeSA_A1636 NC_011094.1 1575487 1576374 R dehydrogenase protein complement(1575487..1576374) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114550.1 CDS SeSA_A1637 NC_011094.1 1576362 1577423 R identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 complement(1576362..1577423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114551.1 CDS SeSA_A1638 NC_011094.1 1577441 1577851 R identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 complement(1577441..1577851) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114552.1 CDS hypC NC_011094.1 1577848 1578147 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(1577848..1578147) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114553.1 CDS hybD NC_011094.1 1578147 1578755 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein complement(1578147..1578755) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114554.1 CDS cybH NC_011094.1 1578761 1579435 R identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit complement(1578761..1579435) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114555.1 CDS SeSA_A1642 NC_011094.1 1579455 1581257 R identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit complement(1579455..1581257) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114556.1 CDS SeSA_A1643 NC_011094.1 1581260 1582363 R identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit complement(1581260..1582363) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114557.1 CDS SeSA_A1644 NC_011094.1 1582781 1583872 D identified by match to protein family HMM PF02275; choloylglycine hydrolase 1582781..1583872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114558.1 CDS SeSA_A1645 NC_011094.1 1584038 1584709 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1584038..1584709 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114559.1 CDS SeSA_A1646 NC_011094.1 1584768 1585793 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase complement(1584768..1585793) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114560.1 CDS SeSA_A1647 NC_011094.1 1585768 1587054 R identified by match to protein family HMM PF07690; membrane transport protein complement(1585768..1587054) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114561.2 CDS pqaA NC_011094.1 1587231 1588787 R PqaA protein complement(1587231..1588787) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114562.1 CDS SeSA_A1649 NC_011094.1 1588857 1590098 R identified by match to protein family HMM PF07690; major facilitator superfamily protein complement(1588857..1590098) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114563.1 CDS SeSA_A1650 NC_011094.1 1590088 1591596 R identified by match to protein family HMM PF01494; hypothetical protein complement(1590088..1591596) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114564.1 CDS SeSA_A1651 NC_011094.1 1591641 1592129 D identified by match to protein family HMM PF01047; transcriptional regulator, MarR family protein 1591641..1592129 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114565.1 CDS SeSA_A1652 NC_011094.1 1592189 1592350 R identified by glimmer; hypothetical protein complement(1592189..1592350) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114566.1 CDS SeSA_A1653 NC_011094.1 1592322 1593401 D isomerase 1592322..1593401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114567.1 CDS SeSA_A1654 NC_011094.1 1593453 1593779 R endoribonuclease L-PSP complement(1593453..1593779) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114568.1 CDS SeSA_A1655 NC_011094.1 1593853 1594137 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE complement(1593853..1594137) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114569.1 CDS SeSA_A1656 NC_011094.1 1594127 1594375 R stability protein StbD complement(1594127..1594375) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114570.1 CDS SeSA_A1658 NC_011094.1 1594675 1595133 D phage membrane protein 1594675..1595133 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114571.1 CDS SeSA_A1659 NC_011094.1 1595127 1595459 D identified by match to protein family HMM PF07377; hypothetical protein 1595127..1595459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114572.1 CDS SeSA_A1660 NC_011094.1 1595623 1596573 D identified by match to protein family HMM PF08357; sefir domain-containing protein 1595623..1596573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114573.1 CDS SeSA_A1662 NC_011094.1 1596997 1597188 D identified by glimmer; hypothetical protein 1596997..1597188 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114574.1 CDS SeSA_A1663 NC_011094.1 1597566 1597736 R hypothetical protein complement(1597566..1597736) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114575.1 CDS SeSA_A1664 NC_011094.1 1598148 1599056 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1598148..1599056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114576.1 CDS SeSA_A1665 NC_011094.1 1599230 1600210 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1599230..1600210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114577.1 CDS SeSA_A1666 NC_011094.1 1600377 1600496 R identified by glimmer; hypothetical protein complement(1600377..1600496) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114578.1 CDS SeSA_A1667 NC_011094.1 1600675 1601682 D identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1600675..1601682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114579.1 CDS nhaC NC_011094.1 1601826 1603277 D identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1601826..1603277 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114580.1 CDS SeSA_A1669 NC_011094.1 1603290 1604492 D identified by match to protein family HMM PF00155; class I and II aminotransferase 1603290..1604492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114581.1 CDS glgX NC_011094.1 1604606 1606666 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX complement(1604606..1606666) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114582.1 CDS treY NC_011094.1 1606723 1609251 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase complement(1606723..1609251) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114583.1 CDS treZ NC_011094.1 1609248 1611032 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase complement(1609248..1611032) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114584.1 CDS SeSA_A1673 NC_011094.1 1611161 1611946 R identified by match to protein family HMM PF06884; hypothetical protein complement(1611161..1611946) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114585.1 CDS hdeB NC_011094.1 1612089 1612418 R acid-resistance protein complement(1612089..1612418) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114586.1 CDS SeSA_A1677 NC_011094.1 1613186 1613821 D hypothetical protein 1613186..1613821 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114587.1 CDS hlyE NC_011094.1 1613956 1614867 D Acts by forming a pore-like structure upon contact with mammalian cells; hemolysin E 1613956..1614867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114588.1 CDS SeSA_A1679 NC_011094.1 1614988 1615419 R identified by match to protein family HMM PF02566; match to protein family HMM TIGR03562; peroxiredoxin OsmC complement(1614988..1615419) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114589.1 CDS SeSA_A1680 NC_011094.1 1615931 1616146 D biofilm-dependent modulation protein 1615931..1616146 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114590.1 CDS SeSA_A1681 NC_011094.1 1616282 1616416 R identified by glimmer; hypothetical protein complement(1616282..1616416) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114591.1 CDS SeSA_A1682 NC_011094.1 1616561 1618258 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1616561..1618258 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114592.1 CDS SeSA_A1683 NC_011094.1 1618540 1619550 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1618540..1619550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114593.1 CDS SeSA_A1684 NC_011094.1 1619641 1620297 R 'nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase'; formate dehydrogenase-N subunit gamma complement(1619641..1620297) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114594.1 CDS fdnH NC_011094.1 1620290 1621174 R identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit complement(1620290..1621174) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114595.1 CDS SeSA_A1688 NC_011094.1 1624513 1625394 D identified by match to protein family HMM PF00892; hypothetical protein 1624513..1625394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114596.1 CDS SeSA_A1689 NC_011094.1 1625920 1627008 D identified by match to protein family HMM PF00267; outer membrane porin protein LC 1625920..1627008 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114597.1 CDS SeSA_A1690 NC_011094.1 1627092 1627532 D identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1627092..1627532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114598.1 CDS SeSA_A1691 NC_011094.1 1627557 1629044 R identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA complement(1627557..1629044) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114599.1 CDS SeSA_A1692 NC_011094.1 1629162 1629740 D identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 1629162..1629740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114600.1 CDS SeSA_A1693 NC_011094.1 1629942 1631342 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1629942..1631342 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114601.1 CDS SeSA_A1694 NC_011094.1 1631434 1635174 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1631434..1635174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114602.1 CDS narY NC_011094.1 1635171 1636715 D identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1635171..1636715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114603.1 CDS narW NC_011094.1 1636715 1637410 D identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1636715..1637410 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114604.1 CDS narV NC_011094.1 1637407 1638087 D identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 subunit gamma 1637407..1638087 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114605.1 CDS SeSA_A1698 NC_011094.1 1638193 1639086 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1638193..1639086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114606.1 CDS SeSA_A1699 NC_011094.1 1639122 1639967 R identified by match to protein family HMM PF00797; N-acetyltransferase superfamily protein complement(1639122..1639967) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114607.1 CDS SeSA_A1700 NC_011094.1 1640070 1640216 D identified by glimmer; hypothetical protein 1640070..1640216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114608.1 CDS SeSA_A1701 NC_011094.1 1640250 1640882 R hypothetical protein complement(1640250..1640882) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114609.1 CDS SeSA_A1702 NC_011094.1 1641395 1642888 D identified by match to protein family HMM PF00324; L-asparagine permease 1641395..1642888 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114610.1 CDS SeSA_A1703 NC_011094.1 1642965 1643153 R identified by match to protein family HMM PF06004; hypothetical protein complement(1642965..1643153) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114611.1 CDS SeSA_A1704 NC_011094.1 1643331 1644392 R hypothetical protein complement(1643331..1644392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114612.1 CDS SeSA_A1705 NC_011094.1 1644656 1646776 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor yncD 1644656..1646776 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114613.1 CDS SeSA_A1706 NC_011094.1 1646832 1647497 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator complement(1646832..1647497) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114614.1 CDS SeSA_A1707 NC_011094.1 1647831 1648868 R identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase yncb complement(1647831..1648868) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114615.1 CDS yncA NC_011094.1 1649079 1649594 D identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1649079..1649594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114616.1 CDS SeSA_A1709 NC_011094.1 1649594 1650043 D identified by match to protein family HMM PF04657; hypothetical protein 1649594..1650043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114617.1 CDS SeSA_A1710 NC_011094.1 1650048 1650281 R hypothetical protein complement(1650048..1650281) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114618.1 CDS SeSA_A1711 NC_011094.1 1650505 1651830 D ssrAB activated gene 1650505..1651830 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114619.1 CDS SeSA_A1712 NC_011094.1 1651835 1654816 D identified by match to protein family HMM PF07520; virulence protein SrfB 1651835..1654816 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114620.1 CDS SeSA_A1713 NC_011094.1 1654813 1656957 D virulence effector protein 1654813..1656957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114621.1 CDS SeSA_A1714 NC_011094.1 1657002 1657175 R hypothetical protein complement(1657002..1657175) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114622.1 CDS ydcW NC_011094.1 1657574 1659019 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1657574..1659019) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114623.1 CDS SeSA_A1716 NC_011094.1 1659134 1660558 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; aminotransferase, classes I and II superfamily protein complement(1659134..1660558) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114624.1 CDS SeSA_A1717 NC_011094.1 1660694 1661464 R identified by match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase complement(1660694..1661464) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114625.1 CDS SeSA_A1718 NC_011094.1 1661988 1662386 R hypothetical protein complement(1661988..1662386) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114626.1 CDS sifB NC_011094.1 1662902 1663852 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1662902..1663852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114627.1 CDS SeSA_A1720 NC_011094.1 1664124 1664354 D hypothetical protein 1664124..1664354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114628.1 CDS SeSA_A1721 NC_011094.1 1664355 1666319 R identified by match to protein family HMM PF01136; peptidase, U32 family protein complement(1664355..1666319) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114629.1 CDS SeSA_A1722 NC_011094.1 1666398 1666955 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, XRE family protein complement(1666398..1666955) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114630.1 CDS SeSA_A1723 NC_011094.1 1667026 1668204 D identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843; benzoate transporter 1667026..1668204 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114631.1 CDS SeSA_A1724 NC_011094.1 1668258 1668926 R lipoprotein complement(1668258..1668926) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114632.1 CDS tehB NC_011094.1 1669082 1669678 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1669082..1669678) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114633.1 CDS SeSA_A1726 NC_011094.1 1669665 1670678 R identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter complement(1669665..1670678) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114634.1 CDS SeSA_A1727 NC_011094.1 1670785 1671765 D hypothetical protein 1670785..1671765 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114635.1 CDS SeSA_A1728 NC_011094.1 1671762 1672301 R identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase complement(1671762..1672301) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114636.1 CDS SeSA_A1729 NC_011094.1 1672518 1673636 D identified by match to protein family HMM PF05343; sgc region protein SgcX 1672518..1673636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114637.1 CDS SeSA_A1730 NC_011094.1 1673633 1673914 D identified by match to protein family HMM PF02302; PTS system lactose/cellobiose specific transporter subunit IIB 1673633..1673914 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114638.1 CDS SeSA_A1731 NC_011094.1 1673925 1675238 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1673925..1675238 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114639.1 CDS SeSA_A1732 NC_011094.1 1675252 1676058 D identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1675252..1676058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114640.1 CDS SeSA_A1733 NC_011094.1 1676190 1676627 D identified by match to protein family HMM PF00359; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 1676190..1676627 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114641.1 CDS SeSA_A1734 NC_011094.1 1676639 1677271 D identified by match to protein family HMM PF00834; epimerase 1676639..1677271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114642.1 CDS SeSA_A1735 NC_011094.1 1677281 1678078 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1677281..1678078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114643.1 CDS SeSA_A1736 NC_011094.1 1678078 1678515 D identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1678078..1678515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114644.1 CDS SeSA_A1737 NC_011094.1 1678562 1679764 R identified by match to protein family HMM PF01070; match to protein family HMM PF01180; L-lactate oxidase complement(1678562..1679764) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114645.1 CDS SeSA_A1738 NC_011094.1 1679776 1680342 R identified by match to protein family HMM PF04264; hypothetical protein complement(1679776..1680342) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114647.1 CDS mdoD NC_011094.1 1680547 1682166 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1680547..1682166) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114648.1 CDS SeSA_A1741 NC_011094.1 1682422 1683930 R identified by match to protein family HMM PF00135; carboxylesterase, type B complement(1682422..1683930) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114649.1 CDS SeSA_A1742 NC_011094.1 1683979 1685322 R identified by match to protein family HMM PF07063; hypothetical protein complement(1683979..1685322) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114650.1 CDS SeSA_A1743 NC_011094.1 1685615 1686538 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1685615..1686538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114651.1 CDS SeSA_A1744 NC_011094.1 1686599 1688206 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III complement(1686599..1688206) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114652.1 CDS SeSA_A1745 NC_011094.1 1688223 1688438 D identified by glimmer; hypothetical protein 1688223..1688438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114653.1 CDS SeSA_A1746 NC_011094.1 1688393 1689511 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(1688393..1689511) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114654.1 CDS SeSA_A1747 NC_011094.1 1689543 1689818 R identified by match to protein family HMM PF02583; hypothetical protein complement(1689543..1689818) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114655.1 CDS SeSA_A1748 NC_011094.1 1689962 1690096 R identified by glimmer; hypothetical protein complement(1689962..1690096) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114656.1 CDS SeSA_A1749 NC_011094.1 1690872 1691588 R hypothetical protein complement(1690872..1691588) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114657.1 CDS SeSA_A1750 NC_011094.1 1692014 1693240 D secreted effector protein 1692014..1693240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114658.1 CDS SeSA_A1751 NC_011094.1 1693361 1693705 R identified by match to protein family HMM PF06961; cyanate transport complement(1693361..1693705) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114659.1 CDS SeSA_A1752 NC_011094.1 1694631 1695392 D identified by match to protein family HMM PF00497; periplasmic binding protein 1694631..1695392 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114660.1 CDS SeSA_A1753 NC_011094.1 1695399 1696046 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease 1695399..1696046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114661.1 CDS SeSA_A1754 NC_011094.1 1696071 1696802 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1696071..1696802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114662.1 CDS SeSA_A1755 NC_011094.1 1696799 1697479 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter 1696799..1697479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114663.1 CDS SeSA_A1756 NC_011094.1 1697616 1699166 D hypothetical protein 1697616..1699166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114664.1 CDS SeSA_A1757 NC_011094.1 1699630 1700292 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; type 12 methyltransferase 1699630..1700292 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114665.1 CDS SeSA_A1759 NC_011094.1 1700563 1701093 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1700563..1701093) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114666.1 CDS SeSA_A1760 NC_011094.1 1701210 1702010 R identified by match to protein family HMM PF02698; hypothetical protein complement(1701210..1702010) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114667.1 CDS hrpA NC_011094.1 1702074 1705994 R 'involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain'; ATP-dependent RNA helicase HrpA complement(1702074..1705994) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114668.1 CDS SeSA_A1762 NC_011094.1 1706177 1706782 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1706177..1706782 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114669.1 CDS SeSA_A1763 NC_011094.1 1706779 1707228 R identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA complement(1706779..1707228) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114670.1 CDS SeSA_A1764 NC_011094.1 1707372 1707695 R identified by match to protein family HMM PF07027; hypothetical protein complement(1707372..1707695) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114671.1 CDS SeSA_A1765 NC_011094.1 1707703 1707894 R hypothetical protein complement(1707703..1707894) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114672.1 CDS SeSA_A1766 NC_011094.1 1707894 1710530 R hypothetical protein complement(1707894..1710530) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114673.1 CDS SeSA_A1767 NC_011094.1 1710770 1711759 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1710770..1711759 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114674.1 CDS SeSA_A1768 NC_011094.1 1711870 1712280 D identified by match to protein family HMM PF03724; heat-inducible protein 1711870..1712280 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114675.1 CDS SeSA_A1769 NC_011094.1 1712324 1712590 R hypothetical protein complement(1712324..1712590) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114676.1 CDS nifJ NC_011094.1 1712866 1716390 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1712866..1716390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114677.1 CDS SeSA_A1772 NC_011094.1 1716449 1716658 R identified by glimmer; hypothetical protein complement(1716449..1716658) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114678.1 CDS SeSA_A1773 NC_011094.1 1716872 1717306 D identified by match to protein family HMM PF00582; universal stress protein F 1716872..1717306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114679.1 CDS SeSA_A1774 NC_011094.1 1717356 1717694 R identified by match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacE complement(1717356..1717694) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114680.1 CDS SeSA_A1775 NC_011094.1 1717969 1719801 R hypothetical protein complement(1717969..1719801) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114682.1 CDS SeSA_A1777 NC_011094.1 1720489 1721424 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1720489..1721424 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114683.1 CDS SeSA_A1778 NC_011094.1 1721468 1722841 R 'exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA'; ATP-dependent RNA helicase DbpA complement(1721468..1722841) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114684.1 CDS zntB NC_011094.1 1723328 1724311 R identified by match to protein family HMM PF01544; zinc transporter complement(1723328..1724311) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114685.1 CDS SeSA_A1781 NC_011094.1 1724457 1725551 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(1724457..1725551) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114686.1 CDS SeSA_A1782 NC_011094.1 1725622 1725783 R hypothetical protein complement(1725622..1725783) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114687.1 CDS SeSA_A1783 NC_011094.1 1726022 1726585 R identified by match to protein family HMM PF01713; Smr protein/MutS2 complement(1726022..1726585) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114688.1 CDS SeSA_A1784 NC_011094.1 1726843 1727358 D identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1726843..1727358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114689.1 CDS fnr NC_011094.1 1727554 1728306 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1727554..1728306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114690.1 CDS uspE NC_011094.1 1728457 1729404 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1728457..1729404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114691.1 CDS SeSA_A1787 NC_011094.1 1729459 1729713 R hypothetical protein complement(1729459..1729713) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114692.1 CDS SeSA_A1788 NC_011094.1 1729952 1730983 D identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI 1729952..1730983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114693.1 CDS SeSA_A1789 NC_011094.1 1731069 1731671 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, Cro/CI family protein complement(1731069..1731671) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114694.1 CDS SeSA_A1790 NC_011094.1 1731715 1732401 D identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1731715..1732401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114695.1 CDS SeSA_A1791 NC_011094.1 1732429 1732767 D hypothetical protein 1732429..1732767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114696.1 CDS SeSA_A1792 NC_011094.1 1732872 1733390 R thiol peroxidase complement(1732872..1733390) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114697.1 CDS SeSA_A1793 NC_011094.1 1733525 1734349 R hypothetical protein complement(1733525..1734349) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114698.1 CDS SeSA_A1794 NC_011094.1 1734376 1736358 R hypothetical protein complement(1734376..1736358) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114699.1 CDS SeSA_A1795 NC_011094.1 1736433 1737278 R hypothetical protein complement(1736433..1737278) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114700.1 CDS SeSA_A1796 NC_011094.1 1737576 1738427 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; regulatory protein 1737576..1738427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114701.1 CDS SeSA_A1797 NC_011094.1 1738817 1739926 D hypothetical protein 1738817..1739926 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114702.1 CDS SeSA_A1798 NC_011094.1 1740140 1740376 R identified by match to protein family HMM PF06004; hypothetical protein complement(1740140..1740376) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114703.1 CDS SeSA_A1799 NC_011094.1 1740504 1741094 R identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein complement(1740504..1741094) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114704.1 CDS SeSA_A1800 NC_011094.1 1741172 1741885 D identified by match to protein family HMM PF00106; oxidoreductase 1741172..1741885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114705.1 CDS SeSA_A1801 NC_011094.1 1741976 1742845 R identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A complement(1741976..1742845) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114706.1 CDS SeSA_A1802 NC_011094.1 1743121 1744026 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR:LysR, substrate-binding complement(1743121..1744026) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114707.1 CDS SeSA_A1803 NC_011094.1 1744146 1745075 D identified by match to protein family HMM PF05368; isoflavone reductase 1744146..1745075 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114708.1 CDS SeSA_A1804 NC_011094.1 1745172 1746785 R identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein complement(1745172..1746785) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114709.1 CDS SeSA_A1805 NC_011094.1 1746975 1747703 D identified by match to protein family HMM PF00246; murein peptide amidase A 1746975..1747703 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114710.1 CDS SeSA_A1806 NC_011094.1 1747678 1748643 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein complement(1747678..1748643) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114711.1 CDS tpx NC_011094.1 1748759 1749265 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1748759..1749265 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114712.1 CDS SeSA_A1808 NC_011094.1 1749355 1750896 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1749355..1750896) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114713.1 CDS SeSA_A1809 NC_011094.1 1751044 1752105 R identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein complement(1751044..1752105) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114714.1 CDS SeSA_A1810 NC_011094.1 1752102 1753499 R identified by match to protein family HMM PF04317; hypothetical protein complement(1752102..1753499) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114715.1 CDS SeSA_A1811 NC_011094.1 1753648 1753962 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1753648..1753962) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114716.1 CDS pspD NC_011094.1 1754038 1754256 R identified by match to protein family HMM PF09584; match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein complement(1754038..1754256) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114717.1 CDS pspC NC_011094.1 1754279 1754638 R 'with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock'; DNA-binding transcriptional activator PspC complement(1754279..1754638) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114718.1 CDS pspB NC_011094.1 1754638 1754862 R 'acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding'; phage shock protein B complement(1754638..1754862) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114719.1 CDS pspA NC_011094.1 1754922 1755590 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1754922..1755590) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114720.1 CDS pspF NC_011094.1 1755746 1756741 D 'transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor'; phage shock protein operon transcriptional activator 1755746..1756741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114721.1 CDS SeSA_A1817 NC_011094.1 1756853 1758502 D identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1756853..1758502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114722.1 CDS SeSA_A1818 NC_011094.1 1758499 1759464 D identified by match to protein family HMM PF00528; peptide transport system permease SapB 1758499..1759464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114723.1 CDS SeSA_A1819 NC_011094.1 1759496 1759633 R hypothetical protein complement(1759496..1759633) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114724.1 CDS SeSA_A1823 NC_011094.1 1763663 1764553 D identified by match to protein family HMM PF00528; peptide transport system permease SapC 1763663..1764553 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114725.1 CDS SeSA_A1824 NC_011094.1 1764553 1765545 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide transport system ATP-binding protein SapD 1764553..1765545 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114726.1 CDS SeSA_A1825 NC_011094.1 1765547 1766353 D identified by match to protein family HMM PF00005; peptide transport system ATP-binding protein SapF 1765547..1766353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114727.1 CDS SeSA_A1826 NC_011094.1 1766369 1767076 R hypothetical protein complement(1766369..1767076) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114728.2 CDS SeSA_A1827 NC_011094.1 1767542 1768915 R hypothetical protein complement(1767542..1768915) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114729.1 CDS fabI NC_011094.1 1769522 1770310 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1769522..1770310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119770.1 CDS SeSA_A1829 NC_011094.1 1770510 1771643 D hypothetical protein 1770510..1771643 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114730.1 CDS rnb NC_011094.1 1771732 1773666 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1771732..1773666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114731.1 CDS SeSA_A1831 NC_011094.1 1773928 1775910 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1773928..1775910 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114732.1 CDS SeSA_A1832 NC_011094.1 1776032 1776211 D hypothetical protein 1776032..1776211 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114733.1 CDS SeSA_A1833 NC_011094.1 1776298 1777050 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; transcriptional regulator, DeoR family protein 1776298..1777050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114734.1 CDS SeSA_A1834 NC_011094.1 1777309 1777527 D lipoprotein 1777309..1777527 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114735.1 CDS SeSA_A1835 NC_011094.1 1777647 1777973 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1777647..1777973) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114736.1 CDS pyrF NC_011094.1 1777973 1778770 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1777973..1778770) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114737.1 CDS SeSA_A1837 NC_011094.1 1778901 1780070 R identified by match to protein family HMM PF07719; hypothetical protein complement(1778901..1780070) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114738.1 CDS SeSA_A1838 NC_011094.1 1780077 1780385 R identified by match to protein family HMM PF06305; hypothetical protein complement(1780077..1780385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114739.1 CDS SeSA_A1839 NC_011094.1 1780535 1781299 R identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B complement(1780535..1781299) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114740.2 CDS ribA NC_011094.1 1781495 1782085 D 'catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate'; GTP cyclohydrolase II 1781495..1782085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114741.1 CDS acnA NC_011094.1 1782141 1784816 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1782141..1784816) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114742.1 CDS SeSA_A1842 NC_011094.1 1785201 1785371 R hypothetical protein complement(1785201..1785371) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114743.1 CDS SeSA_A1843 NC_011094.1 1785372 1785500 R hypothetical protein complement(1785372..1785500) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114744.1 CDS cysB NC_011094.1 1785793 1786767 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1785793..1786767) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114745.1 CDS SeSA_A1845 NC_011094.1 1786723 1786887 D identified by glimmer; hypothetical protein 1786723..1786887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114746.1 CDS topA NC_011094.1 1787171 1789768 R 'catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity'; DNA topoisomerase I complement(1787171..1789768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114747.1 CDS SeSA_A1847 NC_011094.1 1790171 1790422 D hypothetical protein 1790171..1790422 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114748.1 CDS SeSA_A1848 NC_011094.1 1790464 1791510 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1790464..1791510) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114749.1 CDS SeSA_A1849 NC_011094.1 1791748 1792509 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1791748..1792509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114750.1 CDS cobO NC_011094.1 1792506 1793096 D 'catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide'; cob(I)yrinic acid a,c-diamide adenosyltransferase 1792506..1793096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114751.1 CDS rluB NC_011094.1 1793183 1794058 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1793183..1794058) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114752.1 CDS SeSA_A1852 NC_011094.1 1794159 1794779 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein complement(1794159..1794779) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114753.1 CDS SeSA_A1853 NC_011094.1 1794787 1795635 R identified by match to protein family HMM PF02811; phosphoesterase complement(1794787..1795635) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114754.1 CDS trpE NC_011094.1 1795929 1797491 D 'with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine'; anthranilate synthase component I 1795929..1797491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114755.1 CDS trpD NC_011094.1 1797491 1799086 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1797491..1799086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114756.1 CDS SeSA_A1857 NC_011094.1 1799090 1800448 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1799090..1800448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114757.1 CDS trpB NC_011094.1 1800458 1801651 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1800458..1801651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114758.1 CDS trpA NC_011094.1 1801651 1802457 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1801651..1802457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114759.1 CDS SeSA_A1860 NC_011094.1 1802937 1803119 D hypothetical protein 1802937..1803119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114760.1 CDS SeSA_A1861 NC_011094.1 1803209 1803712 D identified by match to protein family HMM PF05974; hypothetical protein 1803209..1803712 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114761.1 CDS SeSA_A1862 NC_011094.1 1803786 1804292 D identified by match to protein family HMM PF05974; hypothetical protein 1803786..1804292 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114762.1 CDS SeSA_A1863 NC_011094.1 1804312 1805190 D identified by match to protein family HMM PF05067; catalase 1804312..1805190 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114763.1 CDS SeSA_A1864 NC_011094.1 1805272 1805910 R receptor for colicin S4; outer membrane protein W complement(1805272..1805910) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114764.1 CDS SeSA_A1865 NC_011094.1 1806064 1806186 R identified by glimmer; hypothetical protein complement(1806064..1806186) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114765.1 CDS SeSA_A1866 NC_011094.1 1806247 1806651 D identified by match to protein family HMM PF03692; ferredoxin 1806247..1806651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114766.1 CDS SeSA_A1867 NC_011094.1 1806677 1807420 D identified by match to protein family HMM PF06790; hypothetical protein 1806677..1807420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114767.1 CDS ispZ NC_011094.1 1807477 1808016 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1807477..1808016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114768.1 CDS SeSA_A1869 NC_011094.1 1808186 1808578 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1808186..1808578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114769.1 CDS SeSA_A1870 NC_011094.1 1808648 1809376 R 'membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins'; transporter complement(1808648..1809376) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114770.1 CDS SeSA_A1871 NC_011094.1 1809599 1809895 D 'unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity'; hypothetical protein 1809599..1809895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114771.1 CDS SeSA_A1872 NC_011094.1 1809939 1810076 R hypothetical protein complement(1809939..1810076) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114772.1 CDS cls NC_011094.1 1810255 1811715 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1810255..1811715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119771.1 CDS SeSA_A1874 NC_011094.1 1811749 1812078 D dsDNA-mimic protein 1811749..1812078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114773.1 CDS SeSA_A1875 NC_011094.1 1812126 1812962 R identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein complement(1812126..1812962) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114774.1 CDS oppF NC_011094.1 1813010 1814014 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF complement(1813010..1814014) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114775.1 CDS oppD NC_011094.1 1814011 1815018 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein complement(1814011..1815018) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114776.1 CDS oppC NC_011094.1 1815030 1815938 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC complement(1815030..1815938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114777.1 CDS oppB NC_011094.1 1815953 1816873 R identified by match to protein family HMM PF00528; oligopeptide transporter permease complement(1815953..1816873) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114778.1 CDS SeSA_A1880 NC_011094.1 1816996 1818627 R identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein complement(1816996..1818627) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114779.1 CDS SeSA_A1881 NC_011094.1 1819392 1820039 R identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein complement(1819392..1820039) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114780.1 CDS adhE NC_011094.1 1820516 1823194 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1820516..1823194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114781.1 CDS tdk NC_011094.1 1823389 1824006 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1823389..1824006) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114782.1 CDS SeSA_A1884 NC_011094.1 1824669 1825082 D identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1824669..1825082 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114783.1 CDS galU NC_011094.1 1825214 1826122 R 'together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase complement(1825214..1826122) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114784.1 CDS SeSA_A1886 NC_011094.1 1826325 1827338 R identified by match to protein family HMM PF00072; response regulator of RpoS complement(1826325..1827338) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114785.1 CDS SeSA_A1887 NC_011094.1 1827429 1828334 R identified by match to protein family HMM PF01734; hypothetical protein complement(1827429..1828334) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114786.1 CDS SeSA_A1888 NC_011094.1 1828397 1828903 D identified by match to protein family HMM PF02810; hypothetical protein 1828397..1828903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114787.1 CDS purU NC_011094.1 1828954 1829796 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1828954..1829796 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114788.1 CDS SeSA_A1895 NC_011094.1 1830802 1831356 D hypothetical protein 1830802..1831356 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114789.1 CDS SeSA_A1896 NC_011094.1 1831377 1831502 D identified by glimmer; hypothetical protein 1831377..1831502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114790.1 CDS narI NC_011094.1 1831524 1832201 R identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma complement(1831524..1832201) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114791.1 CDS narJ NC_011094.1 1832201 1832911 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 complement(1832201..1832911) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114792.1 CDS narH NC_011094.1 1832908 1834443 R identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta complement(1832908..1834443) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114793.1 CDS narG NC_011094.1 1834440 1838183 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha complement(1834440..1838183) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114794.1 CDS SeSA_A1901 NC_011094.1 1838571 1839968 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 complement(1838571..1839968) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114795.1 CDS SeSA_A1903 NC_011094.1 1840066 1840308 R hypothetical protein complement(1840066..1840308) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114796.1 CDS SeSA_A1902 NC_011094.1 1840307 1842103 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1840307..1842103 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114797.1 CDS SeSA_A1904 NC_011094.1 1842096 1842746 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1842096..1842746 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114798.1 CDS SeSA_A1905 NC_011094.1 1842747 1844171 R hypothetical protein complement(1842747..1844171) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114799.1 CDS SeSA_A1906 NC_011094.1 1844348 1844701 D identified by match to protein family HMM PF02635; hypothetical protein 1844348..1844701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114800.1 CDS chaB NC_011094.1 1844781 1845011 R in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1844781..1845011) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114801.1 CDS SeSA_A1908 NC_011094.1 1845278 1846378 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1845278..1846378 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114802.1 CDS kdsA NC_011094.1 1846432 1847286 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1846432..1847286) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114803.1 CDS sirB1 NC_011094.1 1847324 1848133 R transcriptional regulator complement(1847324..1848133) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114804.1 CDS SeSA_A1911 NC_011094.1 1848137 1848514 R identified by match to protein family HMM PF04247; transcriptional regulator complement(1848137..1848514) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114805.1 CDS hemK NC_011094.1 1848523 1849356 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1848523..1849356) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114806.1 CDS prfA NC_011094.1 1849356 1850438 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1849356..1850438) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114807.1 CDS hemA NC_011094.1 1850479 1851735 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1850479..1851735) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114808.1 CDS SeSA_A1915 NC_011094.1 1851903 1852031 R identified by glimmer; hypothetical protein complement(1851903..1852031) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114809.1 CDS lolB NC_011094.1 1852049 1852672 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1852049..1852672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114810.1 CDS ipk NC_011094.1 1852672 1853520 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1852672..1853520 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114811.1 CDS SeSA_A1918 NC_011094.1 1853517 1853687 R identified by glimmer; hypothetical protein complement(1853517..1853687) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114812.1 CDS prs NC_011094.1 1853786 1854733 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1853786..1854733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114813.1 CDS ychM NC_011094.1 1854858 1856543 D role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1854858..1856543 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114814.1 CDS SeSA_A1921 NC_011094.1 1856588 1856866 R 'YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function'; hypothetical protein complement(1856588..1856866) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114815.1 CDS pth NC_011094.1 1857142 1857726 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1857142..1857726 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114816.1 CDS engD NC_011094.1 1857843 1858934 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1857843..1858934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114817.1 CDS SeSA_A1924 NC_011094.1 1858950 1859120 R identified by glimmer; hypothetical protein complement(1858950..1859120) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114818.1 CDS SeSA_A1925 NC_011094.1 1859892 1860587 D identified by glimmer; hypothetical protein 1859892..1860587 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114819.1 CDS SeSA_A1926 NC_011094.1 1861077 1862342 R hypothetical protein complement(1861077..1862342) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114820.1 CDS SeSA_A1927 NC_011094.1 1862611 1862739 R identified by glimmer; hypothetical protein complement(1862611..1862739) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114821.2 CDS SeSA_A1928 NC_011094.1 1862835 1863953 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1862835..1863953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114822.1 CDS SeSA_A1929 NC_011094.1 1863950 1865743 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1863950..1865743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114823.1 CDS cybH NC_011094.1 1865762 1866493 D identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1865762..1866493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114824.1 CDS hybD NC_011094.1 1866490 1867086 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1866490..1867086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114825.1 CDS SeSA_A1932 NC_011094.1 1867076 1867480 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1867076..1867480 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114826.1 CDS SeSA_A1933 NC_011094.1 1867477 1868325 D identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1867477..1868325 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114827.1 CDS cydA NC_011094.1 1868400 1869944 D identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit I 1868400..1869944 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114828.1 CDS cydB NC_011094.1 1869956 1871092 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1869956..1871092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114829.1 CDS SeSA_A1936 NC_011094.1 1871589 1872863 D identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1871589..1872863 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114831.1 CDS treA NC_011094.1 1873077 1874789 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1873077..1874789 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114832.1 CDS SeSA_A1939 NC_011094.1 1874852 1875106 R identified by match to protein family HMM PF04226; transglycosylase-associated protein complement(1874852..1875106) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114833.1 CDS SeSA_A1940 NC_011094.1 1875275 1876009 D identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1875275..1876009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119772.1 CDS SeSA_A1941 NC_011094.1 1876023 1876634 R membrane-bound lytic murein transglycosylase E complement(1876023..1876634) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114834.1 CDS ldcA NC_011094.1 1876805 1877719 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1876805..1877719 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114835.1 CDS SeSA_A1943 NC_011094.1 1877816 1879549 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1877816..1879549 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114836.1 CDS dadX NC_011094.1 1879612 1880682 R 'catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA'; alanine racemase complement(1879612..1880682) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114837.1 CDS SeSA_A1945 NC_011094.1 1880696 1881994 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1880696..1881994) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114838.1 CDS SeSA_A1946 NC_011094.1 1882317 1883849 D identified by match to protein family HMM PF04293; SpoVR family protein 1882317..1883849 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114839.1 CDS fadR NC_011094.1 1883896 1884615 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1883896..1884615) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114840.1 CDS nhaB NC_011094.1 1884835 1886379 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1884835..1886379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114841.1 CDS SeSA_A1949 NC_011094.1 1886521 1887051 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1886521..1887051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114842.1 CDS SeSA_A1950 NC_011094.1 1887160 1887501 D identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1887160..1887501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114843.1 CDS SeSA_A1951 NC_011094.1 1887573 1887746 R identified by match to protein family HMM PF08178; hypothetical protein complement(1887573..1887746) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114844.1 CDS SeSA_A1952 NC_011094.1 1887939 1888076 R hypothetical protein complement(1887939..1888076) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114845.1 CDS SeSA_A1953 NC_011094.1 1888428 1888889 R identified by match to protein family HMM PF03692; hypothetical protein complement(1888428..1888889) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114846.1 CDS SeSA_A1954 NC_011094.1 1888967 1889626 R identified by match to protein family HMM PF01557; hypothetical protein complement(1888967..1889626) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114847.2 CDS SeSA_A1955 NC_011094.1 1889676 1890008 R identified by match to protein family HMM PF05166; hypothetical protein complement(1889676..1890008) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114848.1 CDS minC NC_011094.1 1890095 1890802 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1890095..1890802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114849.1 CDS minD NC_011094.1 1890826 1891638 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1890826..1891638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114850.1 CDS minE NC_011094.1 1891642 1891908 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1891642..1891908 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114851.1 CDS rnd NC_011094.1 1892030 1893157 R identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D complement(1892030..1893157) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114852.1 CDS SeSA_A1961 NC_011094.1 1893230 1894915 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1893230..1894915) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114853.1 CDS SeSA_A1962 NC_011094.1 1894935 1895141 D hypothetical protein 1894935..1895141 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114854.1 CDS slp NC_011094.1 1895120 1895701 R identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp complement(1895120..1895701) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114855.1 CDS SeSA_A1964 NC_011094.1 1895773 1896468 R identified by match to protein family HMM PF00814; glycoprotease family protein complement(1895773..1896468) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114856.1 CDS SeSA_A1965 NC_011094.1 1896526 1898436 R hypothetical protein complement(1896526..1898436) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114857.1 CDS SeSA_A1966 NC_011094.1 1898568 1898912 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1898568..1898912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114858.1 CDS SeSA_A1967 NC_011094.1 1898918 1899097 R identified by match to protein family HMM PF03701; hypothetical protein complement(1898918..1899097) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114859.1 CDS pabB NC_011094.1 1899178 1900542 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase, component I 1899178..1900542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114860.1 CDS SeSA_A1969 NC_011094.1 1900546 1901124 D identified by match to protein family HMM PF00293; hypothetical protein 1900546..1901124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114861.1 CDS SeSA_A1970 NC_011094.1 1901388 1902752 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1901388..1902752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114862.1 CDS SeSA_A1971 NC_011094.1 1902890 1904491 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1902890..1904491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114863.1 CDS SeSA_A1972 NC_011094.1 1904513 1906072 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; membrane protein, TerC family/CBS/transporter associated domain-containing protein complement(1904513..1906072) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114864.1 CDS manX NC_011094.1 1906545 1907513 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIAB 1906545..1907513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114865.1 CDS manY NC_011094.1 1907566 1908366 D identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1907566..1908366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114866.1 CDS manZ NC_011094.1 1908379 1909230 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1908379..1909230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114867.1 CDS SeSA_A1976 NC_011094.1 1909289 1909747 D identified by match to protein family HMM PF06173; hypothetical protein 1909289..1909747 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114868.1 CDS SeSA_A1978 NC_011094.1 1910157 1910723 D identified by match to protein family HMM PF02659; membrane protein YebN 1910157..1910723 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114869.1 CDS rrmA NC_011094.1 1910720 1911529 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase complement(1910720..1911529) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114870.1 CDS SeSA_A1980 NC_011094.1 1911595 1913340 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI complement(1911595..1913340) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114871.1 CDS cspC NC_011094.1 1913560 1913769 R identified by match to protein family HMM PF00313; cold shock-like protein CspC complement(1913560..1913769) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114872.1 CDS SeSA_A1982 NC_011094.1 1914574 1914861 R hypothetical protein complement(1914574..1914861) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114873.1 CDS SeSA_A1983 NC_011094.1 1914932 1915075 R hypothetical protein complement(1914932..1915075) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114874.1 CDS SeSA_A1984 NC_011094.1 1915233 1915472 D hypothetical protein 1915233..1915472 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114875.1 CDS SeSA_A1985 NC_011094.1 1915684 1916475 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR complement(1915684..1916475) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119773.1 CDS SeSA_A1986 NC_011094.1 1916651 1918024 D major facilitatior superfamily transporter 1916651..1918024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114876.1 CDS SeSA_A1987 NC_011094.1 1918072 1918953 R metalloprotease; heat shock protein HtpX complement(1918072..1918953) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114877.1 CDS prc NC_011094.1 1919146 1921242 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1919146..1921242) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114878.1 CDS proQ NC_011094.1 1921214 1921900 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(1921214..1921900) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114879.2 CDS SeSA_A1990 NC_011094.1 1921998 1922582 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(1921998..1922582) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114880.1 CDS SeSA_A1991 NC_011094.1 1922624 1923907 D identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; integral membrane protein, PqiA family protein 1922624..1923907 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114881.1 CDS SeSA_A1992 NC_011094.1 1923870 1926509 D identified by match to protein family HMM PF02470; mce-like protein 1923870..1926509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114882.1 CDS yebU NC_011094.1 1926485 1928026 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1926485..1928026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114883.1 CDS SeSA_A1994 NC_011094.1 1928140 1928379 D identified by match to protein family HMM PF07351; hypothetical protein 1928140..1928379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114884.1 CDS SeSA_A1995 NC_011094.1 1928490 1928681 D identified by match to protein family HMM PF07358; hypothetical protein 1928490..1928681 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114885.2 CDS pphA NC_011094.1 1928700 1929350 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1928700..1929350) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114886.1 CDS SeSA_A1997 NC_011094.1 1929575 1929739 R hypothetical protein complement(1929575..1929739) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114887.1 CDS SeSA_A1998 NC_011094.1 1929825 1929950 R hypothetical protein complement(1929825..1929950) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114888.2 CDS SeSA_A1999 NC_011094.1 1930024 1930746 R identified by match to protein family HMM PF07487; guanine nucleotide exchange factor SopE complement(1930024..1930746) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114889.1 CDS SeSA_A2000 NC_011094.1 1931027 1931158 D identified by glimmer; hypothetical protein 1931027..1931158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114890.1 CDS SeSA_A2001 NC_011094.1 1931430 1931825 D identified by match to protein family HMM PF07166; hypothetical protein 1931430..1931825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114891.1 CDS SeSA_A2002 NC_011094.1 1932153 1932629 D hypothetical protein 1932153..1932629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114892.1 CDS SeSA_A2003 NC_011094.1 1933017 1933436 R identified by match to protein family HMM PF00583; acetyltransferase complement(1933017..1933436) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114893.1 CDS SeSA_A2004 NC_011094.1 1933565 1933765 R hypothetical protein complement(1933565..1933765) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114894.1 CDS SeSA_A2005 NC_011094.1 1933812 1933934 D identified by glimmer; hypothetical protein 1933812..1933934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114895.1 CDS SeSA_A2006 NC_011094.1 1933981 1934127 D hypothetical protein 1933981..1934127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114897.1 CDS SeSA_A2009 NC_011094.1 1935863 1935991 D identified by glimmer; hypothetical protein 1935863..1935991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114898.1 CDS SeSA_A2011 NC_011094.1 1937432 1937590 D hypothetical protein 1937432..1937590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114899.1 CDS SeSA_A2012 NC_011094.1 1937594 1938214 D hypothetical protein 1937594..1938214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114900.1 CDS SeSA_A2013 NC_011094.1 1938702 1938848 D hypothetical protein 1938702..1938848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114901.1 CDS SeSA_A2014 NC_011094.1 1939362 1939487 R arsenical pump membrane protein complement(1939362..1939487) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114902.1 CDS SeSA_A2015 NC_011094.1 1940354 1941682 R identified by match to protein family HMM PF02413; match to protein family HMM PF07484; side tail fiber protein complement(1940354..1941682) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114903.1 CDS SeSA_A2018 NC_011094.1 1942235 1942726 R identified by match to protein family HMM PF07278; hypothetical protein complement(1942235..1942726) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114904.1 CDS SeSA_A2019 NC_011094.1 1943029 1943196 D hypothetical protein 1943029..1943196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114905.1 CDS SeSA_A2021 NC_011094.1 1943982 1944269 R lytic enzyme complement(1943982..1944269) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114906.1 CDS SeSA_A2022 NC_011094.1 1944300 1945406 D exodeoxyribonuclease 8 1944300..1945406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114907.1 CDS SeSA_A2023 NC_011094.1 1945403 1946482 D identified by match to protein family HMM PF00589; match to protein family HMM PF09003; phage integrase 1945403..1946482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114908.1 CDS SeSA_A2027 NC_011094.1 1946857 1947210 R hypothetical protein complement(1946857..1947210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114909.1 CDS SeSA_A2028 NC_011094.1 1947227 1948102 R identified by match to protein family HMM PF05425; copper resistance protein D complement(1947227..1948102) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114910.1 CDS SeSA_A2029 NC_011094.1 1948103 1948477 R identified by match to protein family HMM PF04234; hypothetical protein complement(1948103..1948477) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114911.1 CDS SeSA_A2030 NC_011094.1 1948615 1948845 D identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 1948615..1948845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114912.1 CDS SeSA_A2031 NC_011094.1 1948953 1949609 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1948953..1949609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114913.1 CDS SeSA_A2032 NC_011094.1 1949633 1950331 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1949633..1950331 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114914.1 CDS SeSA_A2033 NC_011094.1 1950368 1952419 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1950368..1952419) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114915.1 CDS SeSA_A2034 NC_011094.1 1952632 1953291 R identified by match to protein family HMM PF04391; hypothetical protein complement(1952632..1953291) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114916.1 CDS SeSA_A2035 NC_011094.1 1953385 1953738 R secreted protein; unknown function; hypothetical protein complement(1953385..1953738) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114917.1 CDS SeSA_A2036 NC_011094.1 1953806 1954096 R identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG complement(1953806..1954096) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114918.1 CDS purT NC_011094.1 1954227 1955405 D 'non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis'; phosphoribosylglycinamide formyltransferase 2 1954227..1955405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114919.1 CDS eda NC_011094.1 1955505 1956146 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1955505..1956146) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114920.1 CDS edd NC_011094.1 1956184 1957995 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1956184..1957995) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114921.1 CDS zwf NC_011094.1 1958230 1959705 R 'catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate'; glucose-6-phosphate 1-dehydrogenase complement(1958230..1959705) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114922.1 CDS SeSA_A2041 NC_011094.1 1960047 1960916 D 'Represses the expression of the zwf, eda, glp and gap'; DNA-binding transcriptional regulator HexR 1960047..1960916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114923.1 CDS pykA NC_011094.1 1961040 1962482 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1961040..1962482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114924.1 CDS msbB NC_011094.1 1962555 1963526 R 'Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1962555..1963526) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114925.1 CDS SeSA_A2044 NC_011094.1 1963643 1964962 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein complement(1963643..1964962) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114926.1 CDS znuA NC_011094.1 1964978 1965922 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(1964978..1965922) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114927.1 CDS znuC NC_011094.1 1966001 1966756 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1966001..1966756 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114928.1 CDS znuB NC_011094.1 1966753 1967538 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1966753..1967538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114929.1 CDS ruvB NC_011094.1 1967617 1968627 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1967617..1968627) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114930.1 CDS ruvA NC_011094.1 1968636 1969247 R plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA complement(1968636..1969247) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114931.1 CDS SeSA_A2050 NC_011094.1 1969606 1970265 R hypothetical protein complement(1969606..1970265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114932.1 CDS SeSA_A2051 NC_011094.1 1970507 1971106 D identified by match to protein family HMM PF06520; hypothetical protein 1970507..1971106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114933.1 CDS ruvC NC_011094.1 1971108 1971629 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase complement(1971108..1971629) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114934.1 CDS SeSA_A2053 NC_011094.1 1971666 1972406 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(1971666..1972406) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114935.1 CDS ntpA NC_011094.1 1972436 1972888 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1972436..1972888) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114936.1 CDS aspS NC_011094.1 1972991 1974763 R 'catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes'; aspartyl-tRNA synthetase complement(1972991..1974763) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114937.1 CDS SeSA_A2056 NC_011094.1 1975088 1975654 D identified by match to protein family HMM PF00857; hypothetical protein 1975088..1975654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114938.1 CDS SeSA_A2057 NC_011094.1 1975651 1976469 D identified by match to protein family HMM PF01904; hypothetical protein 1975651..1976469 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114939.1 CDS SeSA_A2058 NC_011094.1 1976522 1976917 D hypothetical protein 1976522..1976917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114940.1 CDS SeSA_A2059 NC_011094.1 1976958 1977701 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 1976958..1977701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114941.1 CDS SeSA_A2060 NC_011094.1 1977698 1978669 D identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM TIGR00452; methyltransferase 1977698..1978669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114942.1 CDS SeSA_A2061 NC_011094.1 1978905 1979651 R identified by match to protein family HMM PF03932; copper homeostasis protein CutC complement(1978905..1979651) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114943.1 CDS SeSA_A2062 NC_011094.1 1979671 1980240 R identified by match to protein family HMM PF06185; hypothetical protein complement(1979671..1980240) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114945.1 CDS argS NC_011094.1 1980477 1982210 D 'catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase'; arginyl-tRNA synthetase 1980477..1982210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114946.1 CDS mrdA NC_011094.1 1982399 1984270 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 1982399..1984270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114947.1 CDS SeSA_A2066 NC_011094.1 1984324 1985463 R identified by match to protein family HMM PF07470; glycosyl hydrolase, family 88 complement(1984324..1985463) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114948.1 CDS SeSA_A2067 NC_011094.1 1985700 1986092 R identified by match to protein family HMM PF06366; flagellar protein FlhE complement(1985700..1986092) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114949.1 CDS flhA NC_011094.1 1986092 1988170 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1986092..1988170) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114950.1 CDS flhB NC_011094.1 1988163 1989314 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(1988163..1989314) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114951.1 CDS cheZ NC_011094.1 1989508 1990152 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(1989508..1990152) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114952.1 CDS cheY NC_011094.1 1990163 1990552 R 'chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble'; chemotaxis regulatory protein CheY complement(1990163..1990552) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114953.1 CDS cheB NC_011094.1 1990570 1991619 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(1990570..1991619) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114954.1 CDS cheR NC_011094.1 1991616 1992482 R methylates the MCP; chemotaxis methyltransferase CheR complement(1991616..1992482) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114955.1 CDS SeSA_A2074 NC_011094.1 1992643 1994304 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II complement(1992643..1994304) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114956.1 CDS SeSA_A2075 NC_011094.1 1994366 1994497 D identified by glimmer; hypothetical protein 1994366..1994497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114957.1 CDS SeSA_A2076 NC_011094.1 1994541 1995044 R identified by match to protein family HMM PF01584; purine-binding chemotaxis protein complement(1994541..1995044) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114958.1 CDS SeSA_A2077 NC_011094.1 1995065 1997074 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(1995065..1997074) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114959.1 CDS motB NC_011094.1 1997085 1998014 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(1997085..1998014) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114960.1 CDS motA NC_011094.1 1998011 1998898 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(1998011..1998898) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114961.1 CDS flhC NC_011094.1 1999023 1999601 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(1999023..1999601) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114962.1 CDS flhD NC_011094.1 1999604 1999945 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(1999604..1999945) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114963.1 CDS SeSA_A2082 NC_011094.1 2000741 2001169 D 'ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspC 2000741..2001169 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114964.1 CDS otsA NC_011094.1 2001187 2002608 R identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase complement(2001187..2002608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114965.1 CDS otsB NC_011094.1 2002583 2003386 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(2002583..2003386) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114966.1 CDS SeSA_A2085 NC_011094.1 2004018 2004575 R identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein complement(2004018..2004575) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114967.1 CDS SeSA_A2086 NC_011094.1 2004637 2004786 D identified by glimmer; hypothetical protein 2004637..2004786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114968.1 CDS SeSA_A2087 NC_011094.1 2005133 2005636 D identified by match to protein family HMM PF00210; ferritin 2005133..2005636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114969.1 CDS SeSA_A2088 NC_011094.1 2005815 2006453 R identified by match to protein family HMM PF02502; hypothetical protein complement(2005815..2006453) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114970.1 CDS SeSA_A2089 NC_011094.1 2006664 2006999 D outer membrane lipoprotein 2006664..2006999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114971.1 CDS ftnA NC_011094.1 2007239 2007736 D cytoplasmic iron storage protein; ferritin 2007239..2007736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114972.1 CDS SeSA_A2091 NC_011094.1 2007782 2008021 R hypothetical protein complement(2007782..2008021) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114973.1 CDS SeSA_A2092 NC_011094.1 2008191 2009459 D identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 2008191..2009459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114974.1 CDS SeSA_A2093 NC_011094.1 2009534 2010199 R identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein complement(2009534..2010199) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114975.1 CDS SeSA_A2094 NC_011094.1 2010438 2010764 R glucose-6-phosphate dehydrogenase complement(2010438..2010764) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114976.1 CDS SeSA_A2095 NC_011094.1 2010977 2012410 R identified by match to protein family HMM PF00877; cell wall-associated hydrolase complement(2010977..2012410) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119774.1 CDS SeSA_A2096 NC_011094.1 2012630 2012914 R hypothetical protein complement(2012630..2012914) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114977.1 CDS SeSA_A2097 NC_011094.1 2013007 2013135 R identified by glimmer; hypothetical protein complement(2013007..2013135) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114978.1 CDS pgsA NC_011094.1 2013662 2014210 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase complement(2013662..2014210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114979.1 CDS uvrC NC_011094.1 2014267 2016099 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2014267..2016099) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114980.1 CDS uvrY NC_011094.1 2016096 2016752 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2016096..2016752) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114981.1 CDS SeSA_A2104 NC_011094.1 2017064 2017219 D hypothetical protein 2017064..2017219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114982.1 CDS SeSA_A2105 NC_011094.1 2017216 2017440 D hypothetical protein 2017216..2017440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114983.1 CDS SeSA_A2106 NC_011094.1 2017507 2018229 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(2017507..2018229) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114984.1 CDS SeSA_A2107 NC_011094.1 2018462 2019214 R identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC complement(2018462..2019214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114985.1 CDS SeSA_A2108 NC_011094.1 2019211 2019879 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(2019211..2019879) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114986.1 CDS SeSA_A2109 NC_011094.1 2019900 2020886 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2019900..2020886) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114987.1 CDS SeSA_A2110 NC_011094.1 2021040 2021840 R identified by match to protein family HMM PF00497; cystine transporter subunit complement(2021040..2021840) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119775.1 CDS SeSA_A2111 NC_011094.1 2021987 2022508 R flagellar biosynthesis protein FliZ complement(2021987..2022508) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114988.1 CDS fliA NC_011094.1 2022597 2023316 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2022597..2023316) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114989.1 CDS SeSA_A2113 NC_011094.1 2023513 2024718 R lysine-N-methylase complement(2023513..2024718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114990.1 CDS SeSA_A2114 NC_011094.1 2024797 2026317 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2024797..2026317) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114991.1 CDS SeSA_A2116 NC_011094.1 2026335 2026472 R hypothetical protein complement(2026335..2026472) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114992.1 CDS SeSA_A2115 NC_011094.1 2026467 2026595 D identified by glimmer; hypothetical protein 2026467..2026595 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114993.1 CDS fliD NC_011094.1 2026574 2027977 D involved in flagellin assembly; flagellar capping protein 2026574..2027977 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114994.1 CDS fliS NC_011094.1 2027992 2028399 D flagellin specific chaperone; flagellar protein FliS 2027992..2028399 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114995.1 CDS SeSA_A2119 NC_011094.1 2028399 2028767 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2028399..2028767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114996.1 CDS SeSA_A2120 NC_011094.1 2028839 2030323 D 'converts 1,4-alpha-D-glucans to maltodextrin'; alpha-amylase 2028839..2030323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114997.1 CDS SeSA_A2121 NC_011094.1 2030363 2030776 R hypothetical protein complement(2030363..2030776) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114998.2 CDS SeSA_A2122 NC_011094.1 2030902 2032167 D identified by match to protein family HMM PF04143; inner membrane protein 2030902..2032167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002114999.1 CDS SeSA_A2123 NC_011094.1 2032164 2032397 D identified by match to protein family HMM PF01206; hypothetical protein 2032164..2032397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115000.1 CDS SeSA_A2124 NC_011094.1 2032663 2033049 D 50S ribosomal protein 2032663..2033049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115001.1 CDS fliE NC_011094.1 2033169 2033483 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2033169..2033483) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115002.1 CDS SeSA_A2126 NC_011094.1 2033530 2033679 R hypothetical protein complement(2033530..2033679) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115003.1 CDS fliF NC_011094.1 2033643 2035382 D 'the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod'; flagellar MS-ring protein 2033643..2035382 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115004.1 CDS fliG NC_011094.1 2035375 2036370 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2035375..2036370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115005.1 CDS fliH NC_011094.1 2036363 2037070 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2036363..2037070 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115006.1 CDS fliI NC_011094.1 2037070 2038440 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2037070..2038440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115007.1 CDS fliJ NC_011094.1 2038462 2038905 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2038462..2038905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115008.1 CDS SeSA_A2132 NC_011094.1 2038902 2040125 D identified by match to protein family HMM PF02120; flagellar hook-length control protein 2038902..2040125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115009.1 CDS fliL NC_011094.1 2040230 2040697 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2040230..2040697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115010.1 CDS fliM NC_011094.1 2040702 2041706 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2040702..2041706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115011.1 CDS fliN NC_011094.1 2041703 2042116 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2041703..2042116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115012.1 CDS SeSA_A2136 NC_011094.1 2042116 2042493 D 'with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus'; flagellar biosynthesis protein FliO 2042116..2042493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115013.1 CDS fliP NC_011094.1 2042493 2043230 D 'FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliP 2042493..2043230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115014.1 CDS fliQ NC_011094.1 2043240 2043509 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2043240..2043509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115015.1 CDS fliR NC_011094.1 2043518 2044312 D 'FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliR 2043518..2044312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115016.1 CDS SeSA_A2140 NC_011094.1 2044523 2044636 D identified by glimmer; hypothetical protein 2044523..2044636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115017.1 CDS rcsA NC_011094.1 2044594 2045217 D identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 2044594..2045217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115018.1 CDS SeSA_A2142 NC_011094.1 2045256 2045453 R hypothetical protein complement(2045256..2045453) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115019.1 CDS SeSA_A2143 NC_011094.1 2045579 2045806 D hypothetical protein 2045579..2045806 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115020.1 CDS SeSA_A2145 NC_011094.1 2046116 2046931 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2046116..2046931 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115021.1 CDS SeSA_A2146 NC_011094.1 2046910 2048622 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein complement(2046910..2048622) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115022.1 CDS SeSA_A2147 NC_011094.1 2048787 2048972 R hypothetical protein complement(2048787..2048972) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115023.1 CDS SeSA_A2148 NC_011094.1 2049049 2049960 R identified by match to protein family HMM PF05661; hypothetical protein complement(2049049..2049960) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115024.1 CDS SeSA_A2149 NC_011094.1 2050136 2051056 D identified by match to protein family HMM PF00892; hypothetical protein 2050136..2051056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115025.1 CDS SeSA_A2150 NC_011094.1 2051045 2051515 R identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein complement(2051045..2051515) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115026.1 CDS SeSA_A2151 NC_011094.1 2051496 2052926 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase complement(2051496..2052926) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115027.1 CDS SeSA_A2152 NC_011094.1 2053000 2053695 R identified by match to protein family HMM PF01966; hypothetical protein complement(2053000..2053695) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115028.1 CDS SeSA_A2153 NC_011094.1 2053787 2054053 R outer membrane protein N complement(2053787..2054053) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115029.1 CDS SeSA_A2154 NC_011094.1 2054193 2054324 R identified by glimmer; hypothetical protein complement(2054193..2054324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115030.1 CDS SeSA_A2155 NC_011094.1 2054736 2055938 D identified by match to protein family HMM PF00267; outer membrane protein F 2054736..2055938 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119776.1 CDS SeSA_A2156 NC_011094.1 2056398 2056610 R cold shock DNA-binding protein complement(2056398..2056610) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115031.1 CDS SeSA_A2157 NC_011094.1 2056857 2056976 R identified by glimmer; hypothetical protein complement(2056857..2056976) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115032.1 CDS umuC NC_011094.1 2057065 2058333 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2057065..2058333) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115033.1 CDS SeSA_A2159 NC_011094.1 2058336 2058755 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2058336..2058755) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115034.1 CDS SeSA_A2160 NC_011094.1 2058882 2059043 R hypothetical protein complement(2058882..2059043) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115035.1 CDS SeSA_A2162 NC_011094.1 2059525 2060322 D identified by match to protein family HMM PF06167; hypothetical protein 2059525..2060322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115036.1 CDS SeSA_A2164 NC_011094.1 2060806 2060937 D identified by glimmer; hypothetical protein 2060806..2060937 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115037.1 CDS SeSA_A2166 NC_011094.1 2061435 2061563 D identified by glimmer; hypothetical protein 2061435..2061563 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115038.1 CDS amn NC_011094.1 2061677 2063131 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2061677..2063131) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115039.1 CDS SeSA_A2168 NC_011094.1 2063177 2063338 D hypothetical protein 2063177..2063338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115040.1 CDS SeSA_A2169 NC_011094.1 2063327 2063653 R identified by match to protein family HMM PF07377; hypothetical protein complement(2063327..2063653) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119777.1 CDS SeSA_A2171 NC_011094.1 2064750 2066276 R mate efflux family protein complement(2064750..2066276) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115041.1 CDS SeSA_A2177 NC_011094.1 2067978 2068109 R identified by glimmer; hypothetical protein complement(2067978..2068109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115042.1 CDS SeSA_A2178 NC_011094.1 2068560 2069438 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 2068560..2069438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115043.1 CDS gap NC_011094.1 2069588 2070583 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2069588..2070583) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115044.1 CDS SeSA_A2180 NC_011094.1 2070671 2071633 R identified by match to protein family HMM PF00892; transporter EamA family protein complement(2070671..2071633) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115045.1 CDS SeSA_A2181 NC_011094.1 2071756 2073252 R identified by match to protein family HMM PF00501; AMP-binding protein complement(2071756..2073252) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115046.1 CDS SeSA_A2182 NC_011094.1 2073287 2074669 R identified by match to protein family HMM PF01276; lysine decarboxylase complement(2073287..2074669) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115047.1 CDS SeSA_A2183 NC_011094.1 2075095 2075262 R identified by glimmer; hypothetical protein complement(2075095..2075262) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115048.1 CDS SeSA_A2184 NC_011094.1 2075825 2076754 R identified by match to protein family HMM PF03734; hypothetical protein complement(2075825..2076754) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115049.1 CDS cobT NC_011094.1 2076832 2077902 R 'catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole'; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2076832..2077902) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115050.1 CDS cobS NC_011094.1 2077929 2078672 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2077929..2078672) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115051.1 CDS cobU NC_011094.1 2078669 2079214 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase complement(2078669..2079214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115052.1 CDS cobQ NC_011094.1 2079211 2080731 R 'catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation'; cobyric acid synthase complement(2079211..2080731) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115053.1 CDS cbiO NC_011094.1 2080728 2081543 R with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit complement(2080728..2081543) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115054.1 CDS cbiQ NC_011094.1 2081552 2082229 R identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ complement(2081552..2082229) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115055.1 CDS SeSA_A2191 NC_011094.1 2082216 2082497 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2082216..2082497) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115056.1 CDS cbiM NC_011094.1 2082499 2083236 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2082499..2083236) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115057.1 CDS cobI NC_011094.1 2083233 2083946 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2083233..2083946) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115058.1 CDS SeSA_A2194 NC_011094.1 2083943 2084737 R identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(2083943..2084737) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115059.1 CDS cobK NC_011094.1 2084740 2085531 R 'CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6'; cobalt-precorrin-6x reductase complement(2084740..2085531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115060.1 CDS cobJ NC_011094.1 2085528 2086253 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2085528..2086253) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115061.1 CDS SeSA_A2197 NC_011094.1 2086253 2087308 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2086253..2087308) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115062.1 CDS cobM NC_011094.1 2087289 2088062 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2087289..2088062) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115063.1 CDS SeSA_A2199 NC_011094.1 2088046 2088624 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2088046..2088624) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115064.1 CDS cbiE NC_011094.1 2088614 2089219 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2088614..2089219) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115065.1 CDS cbiD NC_011094.1 2089213 2090352 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2089213..2090352) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115066.1 CDS cbiC NC_011094.1 2090352 2090984 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2090352..2090984) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115067.1 CDS cbiB NC_011094.1 2090995 2091954 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2090995..2091954) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115068.1 CDS cobB NC_011094.1 2091951 2093330 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2091951..2093330) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115069.1 CDS SeSA_A2206 NC_011094.1 2093928 2094839 R identified by match to protein family HMM PF00165; regulatory protein PocR complement(2093928..2094839) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115070.1 CDS SeSA_A2207 NC_011094.1 2095056 2095850 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator complement(2095056..2095850) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115071.1 CDS pduA NC_011094.1 2096375 2096659 D identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2096375..2096659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115072.1 CDS SeSA_A2209 NC_011094.1 2096656 2097468 D identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2096656..2097468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115073.1 CDS pduC NC_011094.1 2097487 2099151 D identified by match to protein family HMM PF02286; propanediol utilization dehydratase, large subunit 2097487..2099151 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115074.1 CDS SeSA_A2211 NC_011094.1 2099162 2099836 D identified by match to protein family HMM PF02288; propanediol dehydratase medium subunit 2099162..2099836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115075.1 CDS SeSA_A2212 NC_011094.1 2099851 2100372 D identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2099851..2100372 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115076.1 CDS SeSA_A2213 NC_011094.1 2100579 2102411 D identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2100579..2102411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115077.1 CDS SeSA_A2214 NC_011094.1 2102401 2102751 D PduH protein 2102401..2102751 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115078.1 CDS SeSA_A2215 NC_011094.1 2102771 2103046 D identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2102771..2103046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115079.1 CDS SeSA_A2216 NC_011094.1 2103071 2103532 D identified by match to protein family HMM PF00936; polyhedral body protein 2103071..2103532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115080.1 CDS SeSA_A2217 NC_011094.1 2103532 2104164 D identified by match to protein family HMM PF06130; propanediol utilization 2103532..2104164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115081.1 CDS SeSA_A2218 NC_011094.1 2104161 2104652 D propanediol utilization 2104161..2104652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115082.1 CDS SeSA_A2219 NC_011094.1 2104656 2104931 D identified by match to protein family HMM PF03319; propanediol utilization protein 2104656..2104931 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115083.1 CDS SeSA_A2220 NC_011094.1 2104941 2105951 D identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; PduO protein 2104941..2105951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115084.1 CDS SeSA_A2221 NC_011094.1 2105948 2107342 D identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2105948..2107342 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115085.1 CDS SeSA_A2222 NC_011094.1 2107354 2108466 D identified by match to protein family HMM PF00465; propanol dehydrogenase 2107354..2108466 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115086.1 CDS SeSA_A2223 NC_011094.1 2108463 2109818 D identified by match to protein family HMM PF01512; polyhedral body protein 2108463..2109818 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115087.1 CDS SeSA_A2224 NC_011094.1 2109821 2110375 D identified by match to protein family HMM PF00936; polyhedral body protein 2109821..2110375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115088.1 CDS SeSA_A2225 NC_011094.1 2110402 2110725 D identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2110402..2110725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115089.1 CDS eutP NC_011094.1 2110730 2111182 D identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2110730..2111182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115090.1 CDS ackA NC_011094.1 2111167 2112381 D 'involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol'; propionate kinase 2111167..2112381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115091.1 CDS SeSA_A2228 NC_011094.1 2112439 2113341 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization 2112439..2113341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115092.1 CDS SeSA_A2229 NC_011094.1 2113375 2113710 R identified by match to protein family HMM PF04363; hypothetical protein complement(2113375..2113710) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115093.1 CDS SeSA_A2230 NC_011094.1 2113955 2115013 R hypothetical protein complement(2113955..2115013) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115094.1 CDS SeSA_A2231 NC_011094.1 2115132 2115599 R identified by match to protein family HMM PF06445; DNA gyrase inhibitor complement(2115132..2115599) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115095.1 CDS dacD NC_011094.1 2115750 2116922 R 'removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase complement(2115750..2116922) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115096.1 CDS SeSA_A2233 NC_011094.1 2117046 2117810 R identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit complement(2117046..2117810) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115097.1 CDS SeSA_A2234 NC_011094.1 2117807 2118385 R identified by match to protein family HMM PF00037; (4Fe-4S)-binding protein complement(2117807..2118385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115098.1 CDS SeSA_A2235 NC_011094.1 2118400 2120676 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase complement(2118400..2120676) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115099.1 CDS SeSA_A2237 NC_011094.1 2121305 2123653 D secreted effector protein 2121305..2123653 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115100.1 CDS SeSA_A2238 NC_011094.1 2123857 2123979 R identified by glimmer; hypothetical protein complement(2123857..2123979) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115101.1 CDS SeSA_A2239 NC_011094.1 2124484 2124675 R identified by glimmer; hypothetical protein complement(2124484..2124675) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115102.1 CDS SeSA_A2240 NC_011094.1 2124784 2125218 R identified by glimmer; hypothetical protein complement(2124784..2125218) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115103.1 CDS SeSA_A2241 NC_011094.1 2125574 2125717 R phage tail assembly protein complement(2125574..2125717) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115104.1 CDS SeSA_A2242 NC_011094.1 2125692 2126066 R hypothetical protein complement(2125692..2126066) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115105.1 CDS SeSA_A2243 NC_011094.1 2126118 2127251 D identified by match to protein family HMM PF01757; acetyltransferase family protein 2126118..2127251 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115106.1 CDS SeSA_A2244 NC_011094.1 2127327 2127500 R phage gene complement(2127327..2127500) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115107.1 CDS SeSA_A2245 NC_011094.1 2127490 2128065 R identified by match to protein family HMM PF02413; tail fiber assembly protein complement(2127490..2128065) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115108.1 CDS SeSA_A2246 NC_011094.1 2128065 2129609 R tail protein complement(2128065..2129609) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115109.1 CDS SeSA_A2247 NC_011094.1 2129596 2130183 R tail protein complement(2129596..2130183) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115110.1 CDS SeSA_A2248 NC_011094.1 2130186 2131265 R identified by match to protein family HMM PF04865; tail protein complement(2130186..2131265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115111.1 CDS SeSA_A2249 NC_011094.1 2131258 2131671 R identified by match to protein family HMM PF07409; phage protein GP46 complement(2131258..2131671) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115112.1 CDS SeSA_A2250 NC_011094.1 2131676 2132209 R identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644; bacteriophage Mu Gp45 protein complement(2131676..2132209) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115113.1 CDS SeSA_A2251 NC_011094.1 2132209 2133267 R identified by match to protein family HMM PF06893; bacteriophage Mu P protein complement(2132209..2133267) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115114.1 CDS SeSA_A2252 NC_011094.1 2133264 2134604 R identified by match to protein family HMM PF07157; tail/DNA circulation protein complement(2133264..2134604) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115115.1 CDS SeSA_A2253 NC_011094.1 2134638 2136566 R identified by match to protein family HMM TIGR01760; tail protein complement(2134638..2136566) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115116.1 CDS SeSA_A2254 NC_011094.1 2136651 2136977 R hypothetical protein complement(2136651..2136977) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115117.1 CDS SeSA_A2255 NC_011094.1 2136974 2137330 R tail tube protein complement(2136974..2137330) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115118.1 CDS SeSA_A2256 NC_011094.1 2137330 2138826 R identified by match to protein family HMM PF06274; bacteriophage Mu tail sheath protein complement(2137330..2138826) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115119.1 CDS SeSA_A2257 NC_011094.1 2138816 2138980 R hypothetical protein complement(2138816..2138980) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115120.1 CDS SeSA_A2258 NC_011094.1 2138984 2139544 R hypothetical protein complement(2138984..2139544) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115121.1 CDS SeSA_A2259 NC_011094.1 2139541 2140053 R hypothetical protein complement(2139541..2140053) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115122.1 CDS SeSA_A2260 NC_011094.1 2140025 2140429 R identified by match to protein family HMM TIGR01563; phage head-tail adaptor complement(2140025..2140429) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115123.1 CDS SeSA_A2261 NC_011094.1 2140426 2140749 R hypothetical protein complement(2140426..2140749) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115124.1 CDS SeSA_A2262 NC_011094.1 2140752 2140952 R hypothetical protein complement(2140752..2140952) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115125.1 CDS SeSA_A2263 NC_011094.1 2141003 2142208 R identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family protein complement(2141003..2142208) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115126.1 CDS SeSA_A2264 NC_011094.1 2142223 2142873 R identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; phage prohead protease, HK97 family protein complement(2142223..2142873) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115127.1 CDS SeSA_A2265 NC_011094.1 2142851 2144092 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family protein complement(2142851..2144092) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115128.1 CDS SeSA_A2266 NC_011094.1 2144092 2144274 R hypothetical protein complement(2144092..2144274) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115129.1 CDS SeSA_A2267 NC_011094.1 2144286 2146019 R identified by match to protein family HMM PF03354; phage terminase, large subunit complement(2144286..2146019) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115130.1 CDS SeSA_A2268 NC_011094.1 2146016 2146510 R identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase, small subunit, P27 family protein complement(2146016..2146510) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115131.1 CDS SeSA_A2269 NC_011094.1 2146636 2146986 R HnhC complement(2146636..2146986) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115132.1 CDS SeSA_A2270 NC_011094.1 2147037 2147369 R identified by glimmer; hypothetical protein complement(2147037..2147369) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115133.1 CDS SeSA_A2271 NC_011094.1 2147832 2148050 R Rz lytic protein complement(2147832..2148050) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115134.1 CDS SeSA_A2272 NC_011094.1 2148221 2148835 R identified by match to protein family HMM PF00182; lytic enzyme complement(2148221..2148835) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115135.1 CDS SeSA_A2273 NC_011094.1 2148838 2149185 R identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family protein complement(2148838..2149185) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115136.1 CDS SeSA_A2274 NC_011094.1 2149380 2150069 R identified by match to protein family HMM PF06323; gifsy-1 prophage RegQ complement(2149380..2150069) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115137.1 CDS SeSA_A2275 NC_011094.1 2150203 2150820 R identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein complement(2150203..2150820) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115138.1 CDS SeSA_A2277 NC_011094.1 2150817 2151023 R hypothetical protein complement(2150817..2151023) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115139.1 CDS SeSA_A2278 NC_011094.1 2151023 2151625 R identified by match to protein family HMM PF07105; gifsy-2 prophage protein complement(2151023..2151625) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115140.1 CDS SeSA_A2279 NC_011094.1 2152041 2152274 R identified by match to protein family HMM PF06183; hypothetical protein complement(2152041..2152274) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115141.1 CDS SeSA_A2280 NC_011094.1 2152566 2152718 R hypothetical protein complement(2152566..2152718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119778.1 CDS SeSA_A2281 NC_011094.1 2152934 2153245 R hypothetical protein complement(2152934..2153245) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115142.1 CDS SeSA_A2282 NC_011094.1 2153242 2153589 R identified by match to protein family HMM PF06163; hypothetical protein complement(2153242..2153589) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115143.1 CDS SeSA_A2283 NC_011094.1 2153600 2154349 R identified by match to protein family HMM PF01695; replication protein complement(2153600..2154349) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115144.1 CDS SeSA_A2284 NC_011094.1 2154352 2155329 R identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gifsy-1 prophage PrpO complement(2154352..2155329) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115145.2 CDS SeSA_A2285 NC_011094.1 2155420 2155740 R gifsy-1 prophage cI protein complement(2155420..2155740) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115146.2 CDS SeSA_A2286 NC_011094.1 2156119 2156529 D regulatory protein 2156119..2156529 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115147.1 CDS SeSA_A2287 NC_011094.1 2156723 2156839 D hypothetical protein 2156723..2156839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115148.1 CDS SeSA_A2288 NC_011094.1 2156832 2156990 D hypothetical protein 2156832..2156990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115149.1 CDS SeSA_A2289 NC_011094.1 2157489 2160416 D identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 2157489..2160416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115150.1 CDS SeSA_A2290 NC_011094.1 2160427 2161536 D identified by match to protein family HMM PF03837; gifsy-1 prophage protein 2160427..2161536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115151.1 CDS SeSA_A2291 NC_011094.1 2161579 2161818 D hypothetical protein 2161579..2161818 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115152.1 CDS SeSA_A2292 NC_011094.1 2162182 2163363 R identified by match to protein family HMM PF00589; phage integrase family protein complement(2162182..2163363) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115153.1 CDS sbcB NC_011094.1 2163539 2164969 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2163539..2164969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115154.1 CDS yeeF NC_011094.1 2165105 2166463 R identified by match to protein family HMM PF00324; amino acid permease complement(2165105..2166463) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115155.1 CDS SeSA_A2294 NC_011094.1 2166438 2166554 D identified by glimmer; hypothetical protein 2166438..2166554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115156.1 CDS SeSA_A2296 NC_011094.1 2166749 2167663 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(2166749..2167663) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115157.1 CDS SeSA_A2297 NC_011094.1 2167709 2168533 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein complement(2167709..2168533) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115158.1 CDS hisG NC_011094.1 2168892 2169791 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2168892..2169791 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115159.1 CDS hisD NC_011094.1 2169894 2171198 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2169894..2171198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115160.1 CDS hisC NC_011094.1 2171195 2172274 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2171195..2172274 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115161.1 CDS hisB NC_011094.1 2172271 2173338 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2172271..2173338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115162.1 CDS hisH NC_011094.1 2173338 2173928 D 'with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide'; imidazole glycerol phosphate synthase subunit HisH 2173338..2173928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115163.1 CDS hisA NC_011094.1 2173928 2174665 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2173928..2174665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115164.1 CDS hisF NC_011094.1 2174647 2175423 D 'catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase'; imidazole glycerol phosphate synthase subunit HisF 2174647..2175423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115165.1 CDS SeSA_A2306 NC_011094.1 2175417 2176028 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2175417..2176028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115166.1 CDS SeSA_A2307 NC_011094.1 2176110 2177093 R identified by match to protein family HMM PF02706; chain length determinant protein complement(2176110..2177093) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115167.1 CDS ugd NC_011094.1 2177236 2178402 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase complement(2177236..2178402) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115168.1 CDS gnd NC_011094.1 2178639 2180045 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2178639..2180045) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115169.1 CDS SeSA_A2310 NC_011094.1 2180209 2181639 R identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; UDP-phosphate galactose phosphotransferase complement(2180209..2181639) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115170.1 CDS SeSA_A2311 NC_011094.1 2181711 2183144 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2181711..2183144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115171.1 CDS SeSA_A2312 NC_011094.1 2183131 2184570 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2183131..2184570) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115172.1 CDS SeSA_A2313 NC_011094.1 2184571 2185515 R identified by match to protein family HMM PF00535; O antigen biosynthesis rhamnosyltransferase complement(2184571..2185515) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115173.1 CDS SeSA_A2314 NC_011094.1 2185516 2186577 R identified by match to protein family HMM PF00534; protein RfbU complement(2185516..2186577) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115174.1 CDS SeSA_A2315 NC_011094.1 2186574 2187749 R Wzy complement(2186574..2187749) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115176.1 CDS SeSA_A2320 NC_011094.1 2189161 2190162 R identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV complement(2189161..2190162) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115177.1 CDS SeSA_A2321 NC_011094.1 2190167 2191447 R identified by match to protein family HMM PF01943; O-antigen transporter complement(2190167..2191447) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115178.1 CDS SeSA_A2322 NC_011094.1 2191541 2192440 R identified by match to protein family HMM PF01370; CDP-abequose synthase complement(2191541..2192440) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115179.1 CDS SeSA_A2323 NC_011094.1 2192468 2193781 R identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH complement(2192468..2193781) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115180.1 CDS rfbG NC_011094.1 2193808 2194887 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase complement(2193808..2194887) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115181.1 CDS rfbF NC_011094.1 2194892 2195665 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase complement(2194892..2195665) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115182.1 CDS SeSA_A2326 NC_011094.1 2195681 2196655 R 'catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose'; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2195681..2196655) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115183.1 CDS rfbC NC_011094.1 2196661 2197209 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2196661..2197209) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115184.1 CDS rfbA NC_011094.1 2197213 2198097 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(2197213..2198097) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115185.1 CDS rfbD NC_011094.1 2198139 2199038 R 'with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose'; dTDP-4-dehydrorhamnose reductase complement(2198139..2199038) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115186.1 CDS rfbB NC_011094.1 2199038 2200123 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase complement(2199038..2200123) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115187.1 CDS galF NC_011094.1 2200500 2201393 R 'together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase complement(2200500..2201393) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115188.1 CDS wcaM NC_011094.1 2201571 2202974 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein complement(2201571..2202974) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115189.1 CDS SeSA_A2333 NC_011094.1 2202985 2204205 R identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL complement(2202985..2204205) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115190.1 CDS SeSA_A2334 NC_011094.1 2204202 2205482 R identified by match to protein family HMM PF04230; pyruvyl transferase complement(2204202..2205482) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115191.1 CDS SeSA_A2335 NC_011094.1 2205504 2207036 R identified by match to protein family HMM PF01943; colanic acid exporter complement(2205504..2207036) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115192.1 CDS SeSA_A2336 NC_011094.1 2207115 2208509 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier UDP phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase complement(2207115..2208509) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115193.1 CDS cpsG NC_011094.1 2208563 2209933 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2208563..2209933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115194.1 CDS cpsB NC_011094.1 2210044 2211480 R identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase complement(2210044..2211480) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115195.1 CDS wcaI NC_011094.1 2211483 2212706 R identified by match to protein family HMM PF00534; glycosyl transferase family protein complement(2211483..2212706) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115196.1 CDS nudD NC_011094.1 2212703 2213176 R identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase complement(2212703..2213176) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115197.1 CDS fcl NC_011094.1 2213179 2214144 R identified by match to protein family HMM PF01370; GDP-L-fucose synthetase complement(2213179..2214144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115198.1 CDS gmd NC_011094.1 2214147 2215268 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase complement(2214147..2215268) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115199.1 CDS SeSA_A2343 NC_011094.1 2215292 2215846 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF complement(2215292..2215846) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115200.1 CDS SeSA_A2344 NC_011094.1 2215862 2216608 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2215862..2216608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115201.1 CDS wcaD NC_011094.1 2216621 2217835 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein complement(2216621..2217835) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115202.1 CDS SeSA_A2346 NC_011094.1 2217810 2219027 R glycosyl transferase family protein complement(2217810..2219027) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115203.1 CDS SeSA_A2347 NC_011094.1 2219024 2219512 R 'acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium'; colanic acid biosynthesis acetyltransferase WcaB complement(2219024..2219512) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115204.2 CDS SeSA_A2348 NC_011094.1 2219515 2220357 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2219515..2220357) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115205.1 CDS SeSA_A2349 NC_011094.1 2220444 2222603 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2220444..2222603) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115206.1 CDS wzb NC_011094.1 2222600 2223049 R 'Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis'; tyrosine phosphatase complement(2222600..2223049) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115207.2 CDS SeSA_A2351 NC_011094.1 2223055 2224194 R identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein complement(2223055..2224194) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115208.1 CDS SeSA_A2352 NC_011094.1 2224130 2224243 D identified by glimmer; hypothetical protein 2224130..2224243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119779.1 CDS SeSA_A2353 NC_011094.1 2224869 2226449 D hypothetical protein 2224869..2226449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115209.1 CDS SeSA_A2354 NC_011094.1 2226535 2228391 R 'YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs'; assembly protein complement(2226535..2228391) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115210.1 CDS dcd NC_011094.1 2228430 2229011 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2228430..2229011) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115211.1 CDS udk NC_011094.1 2229102 2229743 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2229102..2229743) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115212.1 CDS SeSA_A2357 NC_011094.1 2229819 2229989 R hypothetical protein complement(2229819..2229989) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115213.1 CDS SeSA_A2358 NC_011094.1 2230068 2233064 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; mase1 domain family protein 2230068..2233064 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115214.1 CDS SeSA_A2359 NC_011094.1 2233032 2233901 R 'inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine'; 3-methyladenine DNA glycosylase complement(2233032..2233901) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115215.1 CDS SeSA_A2360 NC_011094.1 2234035 2235387 D chaperone 2234035..2235387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115216.1 CDS SeSA_A2362 NC_011094.1 2235624 2235740 R identified by glimmer; hypothetical protein complement(2235624..2235740) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115217.1 CDS SeSA_A2363 NC_011094.1 2235828 2237069 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtA 2235828..2237069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115218.1 CDS SeSA_A2364 NC_011094.1 2237069 2240191 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtB 2237069..2240191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115219.1 CDS mdtC NC_011094.1 2240192 2243272 D 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtC 2240192..2243272 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115220.1 CDS SeSA_A2366 NC_011094.1 2243269 2244681 D identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2243269..2244681 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115221.1 CDS SeSA_A2367 NC_011094.1 2244681 2246084 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2244681..2246084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115222.1 CDS SeSA_A2368 NC_011094.1 2246081 2246803 D 'response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport'; DNA-binding transcriptional regulator BaeR 2246081..2246803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115223.1 CDS SeSA_A2369 NC_011094.1 2247072 2248274 D hypothetical protein 2247072..2248274 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115224.1 CDS SeSA_A2370 NC_011094.1 2248274 2248990 D hypothetical protein 2248274..2248990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115225.1 CDS SeSA_A2371 NC_011094.1 2249001 2251112 D hypothetical protein 2249001..2251112 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115226.1 CDS SeSA_A2372 NC_011094.1 2251228 2252589 D identified by match to protein family HMM PF01136; peptidase, U32 family protein 2251228..2252589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115227.1 CDS SeSA_A2374 NC_011094.1 2253230 2253499 R Tir chaperone complement(2253230..2253499) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115228.1 CDS SeSA_A2375 NC_011094.1 2254462 2254578 R hypothetical protein complement(2254462..2254578) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115229.1 CDS SeSA_A2376 NC_011094.1 2254662 2255561 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2254662..2255561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119780.1 CDS SeSA_A2377 NC_011094.1 2255614 2256666 R fructose-bisphosphate aldolase complement(2255614..2256666) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115230.1 CDS yegT NC_011094.1 2256920 2258191 D identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2256920..2258191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115231.1 CDS SeSA_A2379 NC_011094.1 2258188 2259192 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2258188..2259192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115232.1 CDS SeSA_A2380 NC_011094.1 2259189 2260154 D identified by match to protein family HMM PF00294; kinase, PfkB family protein 2259189..2260154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115233.1 CDS SeSA_A2381 NC_011094.1 2260128 2260874 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; transcriptional regulator, GntR family protein complement(2260128..2260874) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115234.1 CDS thiD NC_011094.1 2260910 2261710 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2260910..2261710) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115235.1 CDS thiM NC_011094.1 2261697 2262494 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2261697..2262494) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115236.1 CDS SeSA_A2385 NC_011094.1 2262593 2262778 R identified by glimmer; hypothetical protein complement(2262593..2262778) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115237.1 CDS SeSA_A2386 NC_011094.1 2262904 2263218 D hypothetical protein 2262904..2263218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115238.1 CDS SeSA_A2387 NC_011094.1 2263262 2264284 R identified by match to protein family HMM PF00419; fimbrial protein complement(2263262..2264284) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115239.1 CDS SeSA_A2388 NC_011094.1 2264300 2266786 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(2264300..2266786) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115240.1 CDS SeSA_A2389 NC_011094.1 2266815 2267495 R identified by match to protein family HMM PF00345; pilus assembly chaperone complement(2266815..2267495) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115241.1 CDS SeSA_A2390 NC_011094.1 2267557 2268090 R identified by match to protein family HMM PF00419; fimbrial protein complement(2267557..2268090) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115242.1 CDS SeSA_A2391 NC_011094.1 2268371 2268652 R hypothetical protein complement(2268371..2268652) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115243.1 CDS SeSA_A2392 NC_011094.1 2268930 2270039 R ATPase complement(2268930..2270039) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115244.1 CDS metG NC_011094.1 2270204 2272237 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2270204..2272237 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115245.1 CDS SeSA_A2394 NC_011094.1 2272479 2272937 D identified by match to protein family HMM PF06998; hypothetical protein 2272479..2272937 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115246.1 CDS SeSA_A2395 NC_011094.1 2273109 2273639 D identified by match to protein family HMM PF06998; hypothetical protein 2273109..2273639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115247.1 CDS SeSA_A2396 NC_011094.1 2273696 2274163 R identified by match to protein family HMM PF07308; hypothetical protein complement(2273696..2274163) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115248.1 CDS SeSA_A2397 NC_011094.1 2274210 2274929 R unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT complement(2274210..2274929) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115249.1 CDS SeSA_A2398 NC_011094.1 2274926 2276611 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase complement(2274926..2276611) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115250.1 CDS SeSA_A2399 NC_011094.1 2276834 2277565 D identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein 2276834..2277565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115251.1 CDS SeSA_A2400 NC_011094.1 2277713 2278444 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2277713..2278444) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115252.1 CDS SeSA_A2401 NC_011094.1 2278428 2279375 R identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA complement(2278428..2279375) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115253.1 CDS SeSA_A2402 NC_011094.1 2279368 2280537 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2279368..2280537) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115254.1 CDS SeSA_A2403 NC_011094.1 2280541 2281458 R identified by match to protein family HMM PF04069; amine ABC transporter substrate-binding protein complement(2280541..2281458) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115255.1 CDS SeSA_A2404 NC_011094.1 2281639 2283906 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase complement(2281639..2283906) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115256.1 CDS SeSA_A2405 NC_011094.1 2284203 2285933 D 'component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent'; D-lactate dehydrogenase 2284203..2285933 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115257.1 CDS pbpG NC_011094.1 2285992 2286900 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2285992..2286900) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115258.1 CDS SeSA_A2407 NC_011094.1 2287105 2287692 R identified by match to protein family HMM PF06930; hypothetical protein complement(2287105..2287692) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115259.1 CDS SeSA_A2408 NC_011094.1 2287851 2288420 D identified by match to protein family HMM PF09335; hypothetical protein 2287851..2288420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115260.1 CDS SeSA_A2409 NC_011094.1 2288468 2289250 R identified by match to protein family HMM PF00106; acetoin dehydrogenase complement(2288468..2289250) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115261.1 CDS SeSA_A2410 NC_011094.1 2289295 2290731 R 'may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride'; multidrug resistance outer membrane protein MdtQ complement(2289295..2290731) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115262.1 CDS SeSA_A2412 NC_011094.1 2290782 2290940 R hypothetical protein complement(2290782..2290940) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115263.1 CDS SeSA_A2411 NC_011094.1 2290922 2291119 D hypothetical protein 2290922..2291119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115264.1 CDS SeSA_A2413 NC_011094.1 2291190 2292128 R identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C complement(2291190..2292128) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115265.1 CDS SeSA_A2414 NC_011094.1 2292237 2293430 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2292237..2293430) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115266.1 CDS maiA NC_011094.1 2293445 2294089 R identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase complement(2293445..2294089) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115267.1 CDS SeSA_A2416 NC_011094.1 2294098 2294799 R identified by match to protein family HMM PF01557; FAA-hydrolase-family protein complement(2294098..2294799) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115268.1 CDS gtdA NC_011094.1 2294815 2295852 R identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase complement(2294815..2295852) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115269.1 CDS SeSA_A2418 NC_011094.1 2295864 2297222 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter complement(2295864..2297222) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119781.1 CDS SeSA_A2419 NC_011094.1 2297348 2298256 D LysR family transcriptional regulator 2297348..2298256 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115270.1 CDS SeSA_A2420 NC_011094.1 2298388 2298786 D identified by match to protein family HMM PF03788; hypothetical protein 2298388..2298786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115271.1 CDS SeSA_A2421 NC_011094.1 2298783 2299478 D identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2298783..2299478 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115272.1 CDS cdd NC_011094.1 2299632 2300516 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2299632..2300516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115273.1 CDS SeSA_A2423 NC_011094.1 2300693 2301412 D identified by match to protein family HMM PF02698; hypothetical protein 2300693..2301412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115274.1 CDS SeSA_A2424 NC_011094.1 2301415 2301654 D hypothetical protein 2301415..2301654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115275.1 CDS SeSA_A2425 NC_011094.1 2301859 2303100 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2301859..2303100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115276.1 CDS SeSA_A2426 NC_011094.1 2303094 2304329 D 'catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines'; dihydropyrimidine dehydrogenase 2303094..2304329 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115277.1 CDS mglC NC_011094.1 2304404 2305414 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2304404..2305414) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115278.1 CDS SeSA_A2428 NC_011094.1 2305430 2306950 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2305430..2306950) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115279.1 CDS SeSA_A2429 NC_011094.1 2307084 2308082 R identified by match to protein family HMM PF00532; D-galactose-binding periplasmic protein complement(2307084..2308082) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115280.1 CDS SeSA_A2430 NC_011094.1 2308581 2309603 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2308581..2309603) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115281.1 CDS SeSA_A2431 NC_011094.1 2309753 2310895 R identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein complement(2309753..2310895) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115282.1 CDS folE NC_011094.1 2310910 2311578 R 'involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer'; GTP cyclohydrolase I complement(2310910..2311578) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115283.1 CDS fghA NC_011094.1 2311908 2312765 D identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2311908..2312765 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115284.1 CDS SeSA_A2434 NC_011094.1 2312754 2313188 R identified by match to protein family HMM PF01381; transcriptional regulator complement(2312754..2313188) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115285.1 CDS SeSA_A2435 NC_011094.1 2313148 2314515 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(2313148..2314515) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115286.1 CDS serB NC_011094.1 2314732 2315619 D identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2314732..2315619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115287.1 CDS SeSA_A2437 NC_011094.1 2315652 2316974 D identified by match to protein family HMM PF07690; regulatory protein UhpC 2315652..2316974 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115288.1 CDS SeSA_A2438 NC_011094.1 2317018 2318970 R 'Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein'; colicin I receptor complement(2317018..2318970) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115289.1 CDS SeSA_A2439 NC_011094.1 2319354 2320823 R identified by match to protein family HMM PF00324; lysine transporter complement(2319354..2320823) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115290.1 CDS SeSA_A2440 NC_011094.1 2321013 2321876 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(2321013..2321876) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115291.1 CDS SeSA_A2441 NC_011094.1 2321997 2323046 D identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2321997..2323046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115292.1 CDS SeSA_A2442 NC_011094.1 2323125 2323982 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2323125..2323982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115293.1 CDS SeSA_A2443 NC_011094.1 2324047 2325735 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2324047..2325735) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115294.1 CDS fruK NC_011094.1 2325752 2326690 R 'converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers'; 1-phosphofructokinase complement(2325752..2326690) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115295.1 CDS fruB NC_011094.1 2326690 2327820 R 'phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr'; PTS system fructose-specific transporter subunit IIA/HPr protein complement(2326690..2327820) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115296.1 CDS SeSA_A2446 NC_011094.1 2327841 2327972 D identified by glimmer; hypothetical protein 2327841..2327972 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115297.1 CDS SeSA_A2447 NC_011094.1 2328189 2329370 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2328189..2329370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115298.1 CDS SeSA_A2448 NC_011094.1 2329435 2330100 R hypothetical protein complement(2329435..2330100) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115299.1 CDS SeSA_A2449 NC_011094.1 2330102 2330224 R hypothetical protein complement(2330102..2330224) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115300.1 CDS SeSA_A2450 NC_011094.1 2330612 2330866 R hypothetical protein complement(2330612..2330866) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115301.1 CDS SeSA_A2451 NC_011094.1 2331191 2331763 D 'Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein'; elongation factor P 2331191..2331763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115302.1 CDS SeSA_A2452 NC_011094.1 2331948 2332961 D identified by match to protein family HMM PF02492; cobalamin synthesis protein, P47K 2331948..2332961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115303.1 CDS SeSA_A2453 NC_011094.1 2332964 2333710 D identified by match to protein family HMM PF01569; hypothetical protein 2332964..2333710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115304.1 CDS spr NC_011094.1 2334124 2334696 D 'by similarity, Spr seems to have peptidase activity; involved in thermoresistance'; outer membrane lipoprotein 2334124..2334696 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115305.1 CDS SeSA_A2455 NC_011094.1 2335022 2336578 D identified by match to protein family HMM PF00563; hypothetical protein 2335022..2336578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115306.1 CDS SeSA_A2456 NC_011094.1 2336685 2338490 D identified by match to protein family HMM PF00496; extracellular solute-binding protein 2336685..2338490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115307.1 CDS SeSA_A2457 NC_011094.1 2338500 2339594 D identified by match to protein family HMM PF00528; ABC transporter permease 2338500..2339594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115308.1 CDS SeSA_A2458 NC_011094.1 2339594 2340619 D identified by match to protein family HMM PF00528; ABC transporter permease 2339594..2340619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115309.1 CDS SeSA_A2459 NC_011094.1 2340621 2342210 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2340621..2342210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115310.1 CDS SeSA_A2460 NC_011094.1 2342214 2342558 R hypothetical protein complement(2342214..2342558) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115311.1 CDS bcr NC_011094.1 2342949 2344139 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2342949..2344139) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115312.1 CDS rsuA NC_011094.1 2344167 2344862 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2344167..2344862) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115313.1 CDS SeSA_A2463 NC_011094.1 2345014 2346774 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2345014..2346774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115314.1 CDS rplY NC_011094.1 2346899 2347183 D 'the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response'; 50S ribosomal protein L25 2346899..2347183 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115315.1 CDS ndpA NC_011094.1 2347304 2348311 R identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA complement(2347304..2348311) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115316.1 CDS SeSA_A2466 NC_011094.1 2348491 2348718 D identified by match to protein family HMM PF07208; hypothetical protein 2348491..2348718 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115317.1 CDS SeSA_A2467 NC_011094.1 2348750 2350510 D identified by match to protein family HMM PF00884; hypothetical protein 2348750..2350510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115318.1 CDS SeSA_A2469 NC_011094.1 2350702 2350905 D MsgA-like virulence protein 2350702..2350905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115319.1 CDS SeSA_A2470 NC_011094.1 2351098 2351655 R identified by match to protein family HMM PF09411; outer membrane protein complement(2351098..2351655) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115320.1 CDS SeSA_A2471 NC_011094.1 2351652 2351849 R identified by glimmer; hypothetical protein complement(2351652..2351849) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115321.1 CDS SeSA_A2472 NC_011094.1 2352480 2353127 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2352480..2353127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115322.1 CDS SeSA_A2473 NC_011094.1 2353171 2354214 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(2353171..2354214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115323.1 CDS SeSA_A2474 NC_011094.1 2354211 2354768 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE complement(2354211..2354768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115324.1 CDS ccmF NC_011094.1 2354765 2356696 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(2354765..2356696) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115325.1 CDS SeSA_A2476 NC_011094.1 2356693 2357172 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2356693..2357172) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115326.1 CDS ccmD NC_011094.1 2357169 2357342 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD complement(2357169..2357342) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115327.1 CDS SeSA_A2478 NC_011094.1 2357378 2358124 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC transporter protein complement(2357378..2358124) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115328.1 CDS ccmB NC_011094.1 2358167 2358823 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(2358167..2358823) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115329.1 CDS ccmA NC_011094.1 2358823 2359446 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2358823..2359446) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115330.1 CDS napC NC_011094.1 2359461 2360063 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2359461..2360063) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115331.1 CDS napB NC_011094.1 2360073 2360522 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2360073..2360522) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119782.1 CDS SeSA_A2483 NC_011094.1 2360638 2361507 R quinol dehydrogenase membrane subunit complement(2360638..2361507) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115332.1 CDS napG NC_011094.1 2361494 2362189 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2361494..2362189) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115333.1 CDS napA NC_011094.1 2362196 2364682 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2362196..2364682) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119783.1 CDS napD NC_011094.1 2364679 2364942 R nitrate reductase assembly protein complement(2364679..2364942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115334.1 CDS napF NC_011094.1 2364932 2365423 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein complement(2364932..2365423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115335.1 CDS SeSA_A2488 NC_011094.1 2365825 2366331 D 'serine protease inhibitor, inhibits trypsin and other proteases'; ecotin 2365825..2366331 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115336.1 CDS SeSA_A2489 NC_011094.1 2366540 2368183 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2366540..2368183) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115337.1 CDS SeSA_A2490 NC_011094.1 2368259 2368909 R identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB complement(2368259..2368909) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115338.1 CDS SeSA_A2491 NC_011094.1 2368912 2369973 R identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada complement(2368912..2369973) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115339.1 CDS SeSA_A2492 NC_011094.1 2370054 2371106 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2370054..2371106) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115340.1 CDS SeSA_A2493 NC_011094.1 2371221 2372357 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2371221..2372357) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115341.1 CDS SeSA_A2495 NC_011094.1 2373086 2375755 D identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2373086..2375755 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115342.1 CDS rcsB NC_011094.1 2375772 2376422 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2375772..2376422 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115343.1 CDS SeSA_A2497 NC_011094.1 2376525 2379371 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09456; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2376525..2379371) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115344.1 CDS gyrA NC_011094.1 2379489 2382125 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2379489..2382125) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115345.1 CDS SeSA_A2499 NC_011094.1 2382535 2383737 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase complement(2382535..2383737) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115346.1 CDS SeSA_A2500 NC_011094.1 2383752 2385077 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease complement(2383752..2385077) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115347.1 CDS ubiG NC_011094.1 2386095 2386823 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2386095..2386823 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115348.1 CDS nrdA NC_011094.1 2387122 2389464 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2387122..2389464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115349.1 CDS nrdB NC_011094.1 2389577 2390707 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2389577..2390707 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115350.1 CDS SeSA_A2506 NC_011094.1 2390707 2390961 D 'plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases'; 2Fe-2S ferredoxin 2390707..2390961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115351.1 CDS SeSA_A2509 NC_011094.1 2392313 2393191 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2392313..2393191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115352.1 CDS glpQ NC_011094.1 2393307 2394377 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2393307..2394377) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115353.1 CDS glpT NC_011094.1 2394382 2395740 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2394382..2395740) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115354.1 CDS glpA NC_011094.1 2396013 2397641 D 'anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor'; sn-glycerol-3-phosphate dehydrogenase subunit A 2396013..2397641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115355.1 CDS glpB NC_011094.1 2397631 2398890 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2397631..2398890 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115356.1 CDS glpC NC_011094.1 2398887 2400077 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2398887..2400077 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115357.1 CDS SeSA_A2515 NC_011094.1 2400503 2401525 D 'similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system'; deubiquitinase 2400503..2401525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115358.1 CDS SeSA_A2516 NC_011094.1 2401759 2401935 R competence damage-inducible protein A complement(2401759..2401935) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115359.1 CDS SeSA_A2517 NC_011094.1 2401941 2402744 R identified by match to protein family HMM PF03328; aldolase complement(2401941..2402744) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115360.1 CDS SeSA_A2518 NC_011094.1 2402770 2404059 R identified by match to protein family HMM PF07690; transporter major facilitator family protein complement(2402770..2404059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115361.1 CDS SeSA_A2519 NC_011094.1 2404115 2405320 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein complement(2404115..2405320) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115362.1 CDS SeSA_A2520 NC_011094.1 2405334 2406116 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator complement(2405334..2406116) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115363.1 CDS SeSA_A2521 NC_011094.1 2406366 2407562 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(2406366..2407562) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115364.1 CDS SeSA_A2522 NC_011094.1 2407677 2408351 R identified by match to protein family HMM PF07437; hypothetical protein complement(2407677..2408351) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115365.1 CDS SeSA_A2523 NC_011094.1 2408498 2408923 D identified by match to protein family HMM PF00293; hydrolase, nudix family protein 2408498..2408923 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115366.1 CDS SeSA_A2524 NC_011094.1 2408969 2409574 R identified by match to protein family HMM PF00300; Ais protein complement(2408969..2409574) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115367.1 CDS SeSA_A2525 NC_011094.1 2409855 2411012 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2409855..2411012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115368.1 CDS SeSA_A2526 NC_011094.1 2411015 2411998 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to UDP phosphate; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2411015..2411998 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115369.1 CDS SeSA_A2527 NC_011094.1 2411995 2413977 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2411995..2413977 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115370.1 CDS SeSA_A2528 NC_011094.1 2413974 2414873 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 2413974..2414873 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115371.1 CDS arnT NC_011094.1 2414870 2416516 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2414870..2416516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115372.1 CDS SeSA_A2530 NC_011094.1 2416513 2416848 D identified by match to protein family HMM PF00893; hypothetical protein 2416513..2416848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115373.1 CDS SeSA_A2531 NC_011094.1 2416848 2417225 D hypothetical protein 2416848..2417225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115374.1 CDS SeSA_A2532 NC_011094.1 2417220 2417477 R signal transduction protein PmrD complement(2417220..2417477) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115375.1 CDS menE NC_011094.1 2417575 2418942 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase complement(2417575..2418942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115376.1 CDS menC NC_011094.1 2418939 2419901 R 'catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate'; O-succinylbenzoate synthase complement(2418939..2419901) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115377.1 CDS menB NC_011094.1 2419901 2420758 R 'catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA'; naphthoate synthase complement(2419901..2420758) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115378.1 CDS SeSA_A2536 NC_011094.1 2420773 2421531 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase complement(2420773..2421531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115379.1 CDS menD NC_011094.1 2421528 2423198 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2421528..2423198) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115380.1 CDS SeSA_A2538 NC_011094.1 2423284 2424579 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase complement(2423284..2424579) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115381.1 CDS SeSA_A2539 NC_011094.1 2424680 2424985 R identified by match to protein family HMM PF05957; hypothetical protein complement(2424680..2424985) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115382.1 CDS SeSA_A2540 NC_011094.1 2425040 2425501 R identified by match to protein family HMM PF00583; hypothetical protein complement(2425040..2425501) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115383.2 CDS SeSA_A2542 NC_011094.1 2425562 2426479 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2425562..2426479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115384.1 CDS SeSA_A2543 NC_011094.1 2426545 2427549 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheW 2426545..2427549 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115385.1 CDS nuoN NC_011094.1 2427690 2429147 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2427690..2429147) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115386.1 CDS nuoM NC_011094.1 2429154 2430683 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2429154..2430683) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115387.1 CDS nuoL NC_011094.1 2430760 2432595 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2430760..2432595) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115388.1 CDS nuoK NC_011094.1 2432598 2432900 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2432598..2432900) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115389.1 CDS nuoJ NC_011094.1 2432897 2433451 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2432897..2433451) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115390.1 CDS nuoI NC_011094.1 2433462 2434004 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2433462..2434004) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115391.1 CDS nuoH NC_011094.1 2434019 2434996 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2434019..2434996) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115392.1 CDS nuoG NC_011094.1 2434993 2437719 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2434993..2437719) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115393.1 CDS nuoF NC_011094.1 2437750 2439087 R 'shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase'; NADH dehydrogenase I subunit F complement(2437750..2439087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115394.1 CDS nuoE NC_011094.1 2439084 2439584 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2439084..2439584) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115395.1 CDS nuoC NC_011094.1 2439587 2441389 R 'NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms'; NADH:ubiquinone oxidoreductase subunit C/D complement(2439587..2441389) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115396.1 CDS nuoB NC_011094.1 2441476 2442138 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2441476..2442138) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115397.1 CDS nuoA NC_011094.1 2442154 2442597 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2442154..2442597) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115398.1 CDS SeSA_A2557 NC_011094.1 2442992 2443144 R hypothetical protein complement(2442992..2443144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115399.1 CDS SeSA_A2558 NC_011094.1 2443224 2444162 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT complement(2443224..2444162) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115400.1 CDS SeSA_A2559 NC_011094.1 2445094 2446308 D 'broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor'; aminotransferase 2445094..2446308 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115401.1 CDS SeSA_A2560 NC_011094.1 2446402 2447001 D identified by match to protein family HMM PF01966; hypothetical protein 2446402..2447001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115402.1 CDS SeSA_A2561 NC_011094.1 2447093 2448919 R identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter complement(2447093..2448919) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115403.1 CDS SeSA_A2562 NC_011094.1 2448996 2449655 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase complement(2448996..2449655) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115404.1 CDS SeSA_A2563 NC_011094.1 2449666 2450205 R identified by match to protein family HMM PF03887; hypothetical protein complement(2449666..2450205) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115405.1 CDS SeSA_A2564 NC_011094.1 2450243 2450698 R identified by match to protein family HMM PF04217; hypothetical protein complement(2450243..2450698) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115406.1 CDS SeSA_A2565 NC_011094.1 2450867 2451001 D identified by glimmer; hypothetical protein 2450867..2451001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115407.1 CDS ackA NC_011094.1 2451038 2452240 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2451038..2452240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115408.1 CDS pta NC_011094.1 2452317 2454461 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2452317..2454461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115409.1 CDS SeSA_A2568 NC_011094.1 2454679 2456199 D identified by match to protein family HMM PF03606; hypothetical protein 2454679..2456199 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115410.1 CDS SeSA_A2569 NC_011094.1 2456248 2457201 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein complement(2456248..2457201) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115411.1 CDS SeSA_A2570 NC_011094.1 2457194 2458024 R identified by match to protein family HMM PF00456; transketolase domain-containing protein complement(2457194..2458024) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115412.1 CDS ulaA NC_011094.1 2458021 2459412 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2458021..2459412) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115413.1 CDS SeSA_A2572 NC_011094.1 2459433 2459705 R identified by match to protein family HMM PF02302; phosphotransferase system, lactose/cellobiose-specific IIB subunit complement(2459433..2459705) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115414.1 CDS SeSA_A2573 NC_011094.1 2459786 2460229 R identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA cryptic complement(2459786..2460229) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115415.1 CDS SeSA_A2574 NC_011094.1 2460482 2461501 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2460482..2461501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115416.1 CDS SeSA_A2575 NC_011094.1 2461507 2462061 R identified by match to protein family HMM PF00293; nudix hydrolase 3 complement(2461507..2462061) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115417.1 CDS SeSA_A2576 NC_011094.1 2462118 2462669 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(2462118..2462669) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115418.1 CDS SeSA_A2577 NC_011094.1 2462725 2463369 R identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein complement(2462725..2463369) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115419.1 CDS SeSA_A2578 NC_011094.1 2463512 2464159 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 2463512..2464159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115420.1 CDS SeSA_A2579 NC_011094.1 2464285 2465178 D identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2464285..2465178 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115421.1 CDS hisP NC_011094.1 2465230 2466006 R identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit complement(2465230..2466006) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115422.1 CDS hisM NC_011094.1 2466017 2466724 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM complement(2466017..2466724) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115423.1 CDS hisQ NC_011094.1 2466721 2467407 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ complement(2466721..2467407) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115424.1 CDS SeSA_A2583 NC_011094.1 2467588 2468370 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2467588..2468370) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115425.1 CDS SeSA_A2584 NC_011094.1 2468608 2469390 R identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein complement(2468608..2469390) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115426.1 CDS SeSA_A2585 NC_011094.1 2469468 2469590 D hypothetical protein 2469468..2469590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115427.1 CDS SeSA_A2586 NC_011094.1 2469679 2470248 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2469679..2470248) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115428.1 CDS SeSA_A2587 NC_011094.1 2470275 2471681 R identified by match to protein family HMM PF00324; amino acid transporter complement(2470275..2471681) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115429.1 CDS SeSA_A2588 NC_011094.1 2471745 2472848 R identified by match to protein family HMM PF01168; amino acid racemase complement(2471745..2472848) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115430.1 CDS SeSA_A2589 NC_011094.1 2472850 2474271 R identified by match to protein family HMM PF00324; amino acid transporter complement(2472850..2474271) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115431.1 CDS SeSA_A2590 NC_011094.1 2474362 2475759 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(2474362..2475759) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115432.1 CDS SeSA_A2591 NC_011094.1 2475971 2477398 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2475971..2477398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115433.1 CDS purF NC_011094.1 2477434 2478951 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2477434..2478951) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115434.1 CDS cvpA NC_011094.1 2478989 2479477 R membrane protein required for colicin V production; colicin V production protein complement(2478989..2479477) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115435.1 CDS SeSA_A2594 NC_011094.1 2479788 2480462 R identified by match to protein family HMM PF05036; hypothetical protein complement(2479788..2480462) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115436.1 CDS SeSA_A2595 NC_011094.1 2480452 2481720 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2480452..2481720) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115437.1 CDS accD NC_011094.1 2481788 2482702 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2481788..2482702) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115438.1 CDS SeSA_A2597 NC_011094.1 2482852 2483511 R identified by match to protein family HMM PF09335; hypothetical protein complement(2482852..2483511) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115439.1 CDS truA NC_011094.1 2483560 2484372 R 'mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability'; tRNA pseudouridine synthase A complement(2483560..2484372) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115440.1 CDS SeSA_A2599 NC_011094.1 2484372 2485385 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase complement(2484372..2485385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115441.1 CDS SeSA_A2600 NC_011094.1 2485453 2486589 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase complement(2485453..2486589) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115442.1 CDS flk NC_011094.1 2486693 2487694 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2486693..2487694 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115443.1 CDS SeSA_A2602 NC_011094.1 2487691 2488869 R identified by match to protein family HMM PF07690; hypothetical protein complement(2487691..2488869) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115444.1 CDS SeSA_A2603 NC_011094.1 2489049 2489423 R hypothetical protein complement(2489049..2489423) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115445.1 CDS SeSA_A2604 NC_011094.1 2489772 2489990 D hypothetical protein 2489772..2489990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115446.1 CDS SeSA_A2605 NC_011094.1 2489990 2490508 D hypothetical protein 2489990..2490508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115447.1 CDS SeSA_A2606 NC_011094.1 2490575 2491186 R identified by match to protein family HMM PF02517; caax amino protease family protein complement(2490575..2491186) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115448.1 CDS SeSA_A2607 NC_011094.1 2491329 2492543 R 'FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase complement(2491329..2492543) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115449.1 CDS mnmC NC_011094.1 2492703 2494703 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2492703..2494703 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115450.1 CDS SeSA_A2609 NC_011094.1 2494755 2495030 R identified by match to protein family HMM PF08891; hypothetical protein complement(2494755..2495030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115451.1 CDS SeSA_A2610 NC_011094.1 2495063 2495611 R identified by match to protein family HMM PF04315; hypothetical protein complement(2495063..2495611) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115452.1 CDS SeSA_A2611 NC_011094.1 2495611 2496420 R identified by match to protein family HMM PF01925; hypothetical protein complement(2495611..2496420) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115453.1 CDS mepA NC_011094.1 2496420 2497244 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2496420..2497244) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115454.1 CDS aroC NC_011094.1 2497248 2498333 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2497248..2498333) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119784.1 CDS prmB NC_011094.1 2498369 2499301 R 50S ribosomal protein L3 glutamine methyltransferase complement(2498369..2499301) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115455.1 CDS SeSA_A2615 NC_011094.1 2499467 2500018 D identified by match to protein family HMM PF01713; hypothetical protein 2499467..2500018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115456.1 CDS sixA NC_011094.1 2500118 2500603 R identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase complement(2500118..2500603) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115457.1 CDS fadJ NC_011094.1 2500812 2502959 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2500812..2502959) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115458.1 CDS fadI NC_011094.1 2502959 2504269 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2502959..2504269) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115459.1 CDS SeSA_A2619 NC_011094.1 2504447 2504731 R identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743; hypothetical protein complement(2504447..2504731) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115460.1 CDS SeSA_A2620 NC_011094.1 2505096 2506409 D identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2505096..2506409 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115461.1 CDS SeSA_A2621 NC_011094.1 2506470 2507225 R identified by match to protein family HMM PF04333; lipoprotein, VacJ family protein complement(2506470..2507225) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115462.1 CDS SeSA_A2622 NC_011094.1 2507514 2508455 D hypothetical protein 2507514..2508455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115463.1 CDS SeSA_A2624 NC_011094.1 2508761 2509699 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease complement(2508761..2509699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115464.1 CDS SeSA_A2625 NC_011094.1 2509967 2511214 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulatory proteinpgtA complement(2509967..2511214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115465.1 CDS SeSA_A2626 NC_011094.1 2511204 2513210 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB complement(2511204..2513210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115466.2 CDS SeSA_A2628 NC_011094.1 2513207 2514400 R phosphoglycerate transport: protein for signal transmission complement(2513207..2514400) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115467.1 CDS SeSA_A2629 NC_011094.1 2514836 2516227 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transport: transporter 2514836..2516227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115468.1 CDS SeSA_A2630 NC_011094.1 2516477 2516719 R hypothetical protein complement(2516477..2516719) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115469.1 CDS SeSA_A2631 NC_011094.1 2516880 2516993 R identified by glimmer; hypothetical protein complement(2516880..2516993) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119785.1 CDS SeSA_A2632 NC_011094.1 2517241 2518161 D lipid A biosynthesis lauroyl acyltransferase 2517241..2518161 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115470.1 CDS SeSA_A2633 NC_011094.1 2518276 2518398 D identified by glimmer; hypothetical protein 2518276..2518398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115471.1 CDS SeSA_A2634 NC_011094.1 2518685 2519923 R identified by match to protein family HMM PF00155; aminotransferase complement(2518685..2519923) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115472.1 CDS SeSA_A2635 NC_011094.1 2520266 2520412 R identified by glimmer; hypothetical protein complement(2520266..2520412) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115473.1 CDS glk NC_011094.1 2520645 2521610 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2520645..2521610) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115474.1 CDS SeSA_A2637 NC_011094.1 2521814 2523049 D identified by match to protein family HMM PF00654; hypothetical protein 2521814..2523049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115475.1 CDS SeSA_A2639 NC_011094.1 2523069 2524721 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase complement(2523069..2524721) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115476.1 CDS SeSA_A2638 NC_011094.1 2524716 2524904 D identified by glimmer; hypothetical protein 2524716..2524904 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115477.1 CDS SeSA_A2640 NC_011094.1 2524901 2525899 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family protein 2524901..2525899 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115478.1 CDS SeSA_A2641 NC_011094.1 2526013 2526339 D hypothetical protein 2526013..2526339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115479.1 CDS SeSA_A2642 NC_011094.1 2526400 2527641 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(2526400..2527641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115480.1 CDS nupC NC_011094.1 2527984 2529186 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2527984..2529186 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115481.1 CDS SeSA_A2644 NC_011094.1 2529240 2531429 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; diguanylate cyclase complement(2529240..2531429) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115482.1 CDS SeSA_A2647 NC_011094.1 2532050 2532397 D identified by match to protein family HMM PF07037; hypothetical protein 2532050..2532397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115483.1 CDS SeSA_A2648 NC_011094.1 2532399 2532791 D identified by match to protein family HMM PF07037; hypothetical protein 2532399..2532791 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115484.1 CDS gltX NC_011094.1 2532845 2534260 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2532845..2534260) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115485.1 CDS SeSA_A2654 NC_011094.1 2535230 2536114 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR complement(2535230..2536114) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115486.1 CDS SeSA_A2655 NC_011094.1 2536166 2536324 R identified by match to protein family HMM TIGR03510; XapX domain complement(2536166..2536324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115487.1 CDS nupG NC_011094.1 2536383 2537639 R identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG complement(2536383..2537639) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115488.1 CDS xapA NC_011094.1 2537694 2538527 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2537694..2538527) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115489.1 CDS SeSA_A2658 NC_011094.1 2538783 2539544 D identified by match to protein family HMM PF07135; hypothetical protein 2538783..2539544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115490.1 CDS SeSA_A2659 NC_011094.1 2539606 2540532 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein complement(2539606..2540532) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115491.1 CDS SeSA_A2660 NC_011094.1 2540622 2541620 D identified by match to protein family HMM PF01758; transporter bile acid/Na+ symporter family protein 2540622..2541620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115492.1 CDS SeSA_A2661 NC_011094.1 2541617 2541835 R hypothetical protein complement(2541617..2541835) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115493.1 CDS ligA NC_011094.1 2541837 2543852 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2541837..2543852) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115494.1 CDS zipA NC_011094.1 2543924 2544910 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2543924..2544910) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115495.1 CDS SeSA_A2664 NC_011094.1 2545040 2545903 D role in sulfur assimilation; sulfate transport protein CysZ 2545040..2545903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115496.1 CDS cysK NC_011094.1 2546067 2547038 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2546067..2547038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115497.1 CDS SeSA_A2666 NC_011094.1 2547157 2547282 R hypothetical protein complement(2547157..2547282) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115498.1 CDS ptsH NC_011094.1 2547422 2547679 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2547422..2547679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115499.1 CDS ptsI NC_011094.1 2547728 2549455 D 'Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system'; phosphoenolpyruvate-protein phosphotransferase 2547728..2549455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115500.1 CDS crr NC_011094.1 2549496 2550005 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2549496..2550005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115501.1 CDS SeSA_A2670 NC_011094.1 2550169 2550408 R hypothetical protein complement(2550169..2550408) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115502.1 CDS pdxK NC_011094.1 2550405 2551271 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2550405..2551271) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115503.1 CDS SeSA_A2672 NC_011094.1 2551354 2552646 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2551354..2552646 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115504.1 CDS SeSA_A2673 NC_011094.1 2552661 2553380 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2552661..2553380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115505.1 CDS SeSA_A2674 NC_011094.1 2553439 2553816 D hypothetical protein 2553439..2553816 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115506.1 CDS cysM NC_011094.1 2553849 2554760 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2553849..2554760) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115507.1 CDS SeSA_A2675 NC_011094.1 2554751 2554876 D identified by glimmer; hypothetical protein 2554751..2554876 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115508.1 CDS cysA NC_011094.1 2554881 2555975 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit complement(2554881..2555975) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115509.1 CDS cysW NC_011094.1 2555965 2556840 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2555965..2556840) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115510.1 CDS cysT NC_011094.1 2556840 2557673 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit complement(2556840..2557673) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115511.1 CDS cysP NC_011094.1 2557673 2558689 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit complement(2557673..2558689) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115512.1 CDS fabG NC_011094.1 2558847 2559638 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase complement(2558847..2559638) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115513.1 CDS SeSA_A2682 NC_011094.1 2559876 2560775 R identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; Dyp-type peroxidase family protein complement(2559876..2560775) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115514.1 CDS SeSA_A2683 NC_011094.1 2560870 2561445 R identified by match to protein family HMM PF06572; hypothetical protein complement(2560870..2561445) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115515.1 CDS SeSA_A2684 NC_011094.1 2561507 2561956 R hypothetical protein complement(2561507..2561956) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115516.1 CDS SeSA_A2685 NC_011094.1 2561943 2562368 R identified by match to protein family HMM PF00583; acetyltransferase complement(2561943..2562368) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115517.1 CDS amiA NC_011094.1 2562581 2563450 D identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2562581..2563450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115518.1 CDS hemF NC_011094.1 2563453 2564352 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2563453..2564352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115519.1 CDS SeSA_A2688 NC_011094.1 2564452 2565504 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2564452..2565504) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115520.1 CDS SeSA_A2689 NC_011094.1 2565552 2566046 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK complement(2565552..2566046) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115521.1 CDS SeSA_A2690 NC_011094.1 2566059 2566718 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL complement(2566059..2566718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115522.1 CDS eutC NC_011094.1 2566728 2567624 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(2566728..2567624) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115523.1 CDS eutB NC_011094.1 2567643 2569004 R identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase, large subunit complement(2567643..2569004) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115524.1 CDS eutA NC_011094.1 2569016 2570419 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(2569016..2570419) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115525.1 CDS eutH NC_011094.1 2570416 2571642 R identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH complement(2570416..2571642) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115526.1 CDS SeSA_A2695 NC_011094.1 2571762 2572949 R identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG complement(2571762..2572949) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115527.1 CDS eutJ NC_011094.1 2572939 2573778 R identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ complement(2572939..2573778) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115528.1 CDS eutE NC_011094.1 2573789 2575192 R identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE complement(2573789..2575192) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119786.1 CDS eutN NC_011094.1 2575204 2575503 R ethanolimine utilization protein EutN complement(2575204..2575503) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119787.1 CDS SeSA_A2699 NC_011094.1 2575604 2575894 R ethanolamine utilization protein EutM complement(2575604..2575894) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115529.1 CDS eutD NC_011094.1 2575935 2576951 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2575935..2576951) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115530.1 CDS eutT NC_011094.1 2576948 2577751 R identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase complement(2576948..2577751) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115531.1 CDS SeSA_A2702 NC_011094.1 2577748 2578437 R identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ complement(2577748..2578437) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115532.1 CDS eutP NC_011094.1 2578415 2578894 R identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP complement(2578415..2578894) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115533.1 CDS SeSA_A2704 NC_011094.1 2578907 2579242 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS complement(2578907..2579242) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115534.1 CDS maeB NC_011094.1 2579659 2581938 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2579659..2581938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115535.1 CDS tal NC_011094.1 2582210 2583160 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2582210..2583160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115536.1 CDS tkt NC_011094.1 2583180 2585180 D 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 2583180..2585180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115537.1 CDS SeSA_A2708 NC_011094.1 2585243 2585473 R hypothetical protein complement(2585243..2585473) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115538.1 CDS SeSA_A2709 NC_011094.1 2585602 2586645 R identified by match to protein family HMM PF06674; hypothetical protein complement(2585602..2586645) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115539.1 CDS SeSA_A2710 NC_011094.1 2586770 2587345 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH complement(2586770..2587345) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115540.1 CDS SeSA_A2711 NC_011094.1 2587549 2588847 D identified by match to protein family HMM PF00144; hypothetical protein 2587549..2588847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115541.1 CDS SeSA_A2712 NC_011094.1 2589296 2591257 R 'unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)'; oxidoreductase Fe-S binding subunit complement(2589296..2591257) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115542.1 CDS SeSA_A2713 NC_011094.1 2591443 2593143 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2591443..2593143 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115543.1 CDS acrD NC_011094.1 2593328 2596441 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2593328..2596441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115544.1 CDS SeSA_A2715 NC_011094.1 2597015 2597371 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2597015..2597371 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115545.1 CDS dapE NC_011094.1 2597375 2598502 D 'dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.'; succinyl-diaminopimelate desuccinylase 2597375..2598502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115546.1 CDS SeSA_A2717 NC_011094.1 2598530 2598730 D hypothetical protein 2598530..2598730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115547.1 CDS SeSA_A2718 NC_011094.1 2598757 2600775 R identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase complement(2598757..2600775) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115548.1 CDS SeSA_A2719 NC_011094.1 2600791 2601654 R identified by match to protein family HMM PF04228; zinc protease complement(2600791..2601654) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115549.1 CDS purC NC_011094.1 2601785 2602498 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2601785..2602498) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115550.1 CDS SeSA_A2721 NC_011094.1 2602501 2602614 R identified by glimmer; hypothetical protein complement(2602501..2602614) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115551.1 CDS SeSA_A2722 NC_011094.1 2602673 2603707 R identified by match to protein family HMM PF06804; lipoprotein complement(2602673..2603707) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115552.1 CDS dapA NC_011094.1 2603724 2604602 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2603724..2604602) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115553.1 CDS gcvR NC_011094.1 2604748 2605320 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2604748..2605320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115554.1 CDS bcp NC_011094.1 2605320 2605790 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2605320..2605790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115555.1 CDS SeSA_A2726 NC_011094.1 2605837 2606976 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(2605837..2606976) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115556.1 CDS SeSA_A2727 NC_011094.1 2606982 2608250 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; gluconate transporter complement(2606982..2608250) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115557.1 CDS SeSA_A2728 NC_011094.1 2608318 2609499 R identified by match to protein family HMM PF05651; transcriptional regulator, CdaR complement(2608318..2609499) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115558.1 CDS SeSA_A2729 NC_011094.1 2609589 2609711 R identified by glimmer; hypothetical protein complement(2609589..2609711) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115559.1 CDS SeSA_A2730 NC_011094.1 2609781 2610869 R identified by match to protein family HMM PF01594; permease PerM complement(2609781..2610869) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115560.1 CDS SeSA_A2731 NC_011094.1 2611056 2612519 D identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2611056..2612519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115561.1 CDS arsC NC_011094.1 2612559 2612918 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2612559..2612918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115562.1 CDS hda NC_011094.1 2612945 2613670 R 'controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP'; DNA replication initiation factor complement(2612945..2613670) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115563.1 CDS uraA NC_011094.1 2613741 2615030 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter complement(2613741..2615030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115564.1 CDS upp NC_011094.1 2615118 2615744 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2615118..2615744) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115565.1 CDS SeSA_A2736 NC_011094.1 2615979 2616122 D identified by glimmer; hypothetical protein 2615979..2616122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115566.1 CDS purM NC_011094.1 2616158 2617195 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2616158..2617195 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115567.1 CDS purN NC_011094.1 2617195 2617833 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2617195..2617833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115568.1 CDS ppk NC_011094.1 2618022 2620088 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2618022..2620088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115569.1 CDS SeSA_A2740 NC_011094.1 2620054 2621634 D identified by match to protein family HMM PF02541; exopolyphosphatase 2620054..2621634 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115570.1 CDS SeSA_A2741 NC_011094.1 2621670 2623883 R identified by match to protein family HMM PF00563; match to protein family HMM PF05231; hypothetical protein complement(2621670..2623883) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115571.1 CDS SeSA_A2742 NC_011094.1 2624344 2624487 D hypothetical protein 2624344..2624487 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115572.1 CDS SeSA_A2743 NC_011094.1 2625377 2625733 R transposase B complement(2625377..2625733) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115573.1 CDS guaA NC_011094.1 2625890 2627467 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2625890..2627467) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115574.1 CDS guaB NC_011094.1 2627537 2629003 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2627537..2629003) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115575.1 CDS xseA NC_011094.1 2629164 2630513 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2629164..2630513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115576.1 CDS SeSA_A2751 NC_011094.1 2644077 2649662 R identified by match to protein family HMM PF05688; match to protein family HMM PF05689; RatB complement(2644077..2649662) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115577.1 CDS SeSA_A2753 NC_011094.1 2649800 2650765 R hypothetical protein complement(2649800..2650765) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115578.1 CDS SeSA_A2752 NC_011094.1 2650720 2650842 D identified by glimmer; hypothetical protein 2650720..2650842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115579.1 CDS SeSA_A2754 NC_011094.1 2650823 2653015 R Aec1 complement(2650823..2653015) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115580.1 CDS SeSA_A2755 NC_011094.1 2653016 2653132 D identified by glimmer; hypothetical protein 2653016..2653132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115581.1 CDS SeSA_A2756 NC_011094.1 2653362 2653583 R identified by match to protein family HMM PF07191; hypothetical protein complement(2653362..2653583) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119788.1 CDS engA NC_011094.1 2653672 2655186 R GTPase EngA complement(2653672..2655186) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115582.1 CDS SeSA_A2758 NC_011094.1 2655261 2656439 R 'with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis'; outer membrane protein assembly complex subunit YfgL complement(2655261..2656439) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115583.1 CDS SeSA_A2759 NC_011094.1 2656450 2657070 R hypothetical protein complement(2656450..2657070) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115584.1 CDS hisS NC_011094.1 2657084 2658358 R 'catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG'; histidyl-tRNA synthetase complement(2657084..2658358) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115585.1 CDS ispG NC_011094.1 2658469 2659587 R 'catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis'; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2658469..2659587) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115586.1 CDS SeSA_A2763 NC_011094.1 2659614 2660618 R identified by match to protein family HMM PF01381; cytoskeletal protein RodZ complement(2659614..2660618) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115587.1 CDS SeSA_A2764 NC_011094.1 2660911 2662077 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2660911..2662077) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115588.1 CDS ndk NC_011094.1 2662284 2662715 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2662284..2662715) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115589.1 CDS SeSA_A2766 NC_011094.1 2662836 2663699 R identified by match to protein family HMM PF00037; polyferredoxin complement(2662836..2663699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115590.1 CDS SeSA_A2767 NC_011094.1 2663699 2664508 R anaerobic reductase subunit complement(2663699..2664508) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115591.1 CDS dmsB NC_011094.1 2664501 2665130 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B complement(2664501..2665130) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115592.1 CDS SeSA_A2769 NC_011094.1 2665127 2667505 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A complement(2665127..2667505) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115593.1 CDS pbpC NC_011094.1 2667660 2669975 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(2667660..2669975) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115594.1 CDS SeSA_A2771 NC_011094.1 2669976 2674910 R identified by match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein complement(2669976..2674910) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115595.1 CDS sseA NC_011094.1 2675119 2675961 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2675119..2675961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115596.1 CDS SeSA_A2773 NC_011094.1 2675941 2676144 R identified by glimmer; hypothetical protein complement(2675941..2676144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115597.1 CDS sseB NC_011094.1 2676530 2677276 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2676530..2677276) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115598.1 CDS SeSA_A2776 NC_011094.1 2677416 2678699 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(2677416..2678699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115599.1 CDS iscX NC_011094.1 2678753 2678953 R identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein complement(2678753..2678953) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115600.1 CDS fdx NC_011094.1 2678965 2679300 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin, 2Fe-2S type, ISC system complement(2678965..2679300) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115601.1 CDS hscA NC_011094.1 2679302 2681152 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2679302..2681152) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115602.1 CDS hscB NC_011094.1 2681165 2681680 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2681165..2681680) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115603.1 CDS iscA NC_011094.1 2681876 2682199 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2681876..2682199) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115604.1 CDS iscU NC_011094.1 2682228 2682614 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein complement(2682228..2682614) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115605.1 CDS iscS NC_011094.1 2682642 2683856 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2682642..2683856) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115606.1 CDS SeSA_A2784 NC_011094.1 2683909 2684028 D identified by glimmer; hypothetical protein 2683909..2684028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115607.1 CDS iscR NC_011094.1 2684037 2684531 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2684037..2684531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115608.1 CDS SeSA_A2786 NC_011094.1 2684691 2685422 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(2684691..2685422) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115609.1 CDS suhB NC_011094.1 2685541 2686344 D identified by match to protein family HMM PF00459; inositol monophosphatase 2685541..2686344 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115610.1 CDS SeSA_A2788 NC_011094.1 2686489 2687367 D hypothetical protein 2686489..2687367 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115611.1 CDS asrA NC_011094.1 2687549 2688592 D identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2687549..2688592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115612.1 CDS asrB NC_011094.1 2688596 2689414 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2688596..2689414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115613.1 CDS asrC NC_011094.1 2689425 2690438 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2689425..2690438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115614.1 CDS SeSA_A2792 NC_011094.1 2690439 2691425 R identified by match to protein family HMM PF03824; high-affinity nickel-transporter complement(2690439..2691425) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115615.1 CDS SeSA_A2793 NC_011094.1 2691416 2692045 R identified by match to protein family HMM PF06226; hypothetical protein complement(2691416..2692045) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115616.1 CDS SeSA_A2794 NC_011094.1 2692180 2693457 D identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2692180..2693457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115617.1 CDS SeSA_A2795 NC_011094.1 2693452 2694591 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(2693452..2694591) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115618.1 CDS glyA NC_011094.1 2694787 2696040 R 'catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate'; serine hydroxymethyltransferase complement(2694787..2696040) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115619.1 CDS SeSA_A2797 NC_011094.1 2696178 2696324 R hypothetical protein complement(2696178..2696324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115620.1 CDS hmp NC_011094.1 2696365 2697555 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2696365..2697555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115621.1 CDS SeSA_A2799 NC_011094.1 2697737 2699281 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2697737..2699281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115622.1 CDS cadB NC_011094.1 2699643 2700974 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2699643..2700974 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115623.1 CDS SeSA_A2801 NC_011094.1 2701057 2703201 D identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2701057..2703201 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115624.1 CDS SeSA_A2802 NC_011094.1 2703257 2704717 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2703257..2704717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115625.1 CDS SeSA_A2803 NC_011094.1 2704766 2705104 R 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA'; nitrogen regulatory protein P-II 1 complement(2704766..2705104) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115626.1 CDS SeSA_A2804 NC_011094.1 2705181 2706518 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulatory protein ZraR complement(2705181..2706518) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115627.2 CDS SeSA_A2805 NC_011094.1 2706515 2707279 R hypothetical protein complement(2706515..2707279) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119789.1 CDS SeSA_A2806 NC_011094.1 2707281 2708666 R hypothetical protein complement(2707281..2708666) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115628.1 CDS purL NC_011094.1 2709360 2713247 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2709360..2713247) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115629.1 CDS SeSA_A2809 NC_011094.1 2713361 2713498 D hypothetical protein 2713361..2713498 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115630.1 CDS SeSA_A2810 NC_011094.1 2713503 2715047 D 'YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function'; transglycosylase 2713503..2715047 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115631.1 CDS SeSA_A2811 NC_011094.1 2715098 2715616 R identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase complement(2715098..2715616) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115632.1 CDS yfhB NC_011094.1 2715674 2716309 R identified by match to protein family HMM TIGR01545; hypothetical protein complement(2715674..2716309) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115633.1 CDS SeSA_A2813 NC_011094.1 2716313 2717674 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; phosphotransferase system, eiic complement(2716313..2717674) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115634.1 CDS murQ NC_011094.1 2717685 2718578 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2717685..2718578) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115635.1 CDS SeSA_A2815 NC_011094.1 2718694 2719542 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2718694..2719542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115636.1 CDS panE NC_011094.1 2719581 2720498 R identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(2719581..2720498) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115637.1 CDS SeSA_A2817 NC_011094.1 2720520 2721716 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(2720520..2721716) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115638.1 CDS SeSA_A2818 NC_011094.1 2721832 2722758 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2721832..2722758 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115639.1 CDS SeSA_A2819 NC_011094.1 2722796 2723056 D identified by match to protein family HMM PF00037; ferredoxin 2722796..2723056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115640.1 CDS acpS NC_011094.1 2723168 2723548 R 'Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids'; 4'-phosphopantetheinyl transferase complement(2723168..2723548) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115641.1 CDS pdxJ NC_011094.1 2723548 2724279 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2723548..2724279) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115642.1 CDS recO NC_011094.1 2724291 2725019 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2724291..2725019) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115643.1 CDS era NC_011094.1 2725031 2725936 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2725031..2725936) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115644.1 CDS rnc NC_011094.1 2725933 2726670 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2725933..2726670) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115645.1 CDS lepB NC_011094.1 2726887 2727861 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2726887..2727861) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115646.1 CDS lepA NC_011094.1 2727878 2729677 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2727878..2729677) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115647.1 CDS SeSA_A2827 NC_011094.1 2729649 2729786 D identified by glimmer; hypothetical protein 2729649..2729786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115648.1 CDS SeSA_A2829 NC_011094.1 2729929 2730408 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2729929..2730408) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115649.1 CDS rseB NC_011094.1 2730405 2731361 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2730405..2731361) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115650.1 CDS rseA NC_011094.1 2731361 2732011 R identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE complement(2731361..2732011) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115651.1 CDS rpoE NC_011094.1 2732043 2732618 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2732043..2732618) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115652.1 CDS SeSA_A2833 NC_011094.1 2732779 2732958 R identified by glimmer; hypothetical protein complement(2732779..2732958) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115653.1 CDS nadB NC_011094.1 2733043 2734665 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2733043..2734665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119790.1 CDS SeSA_A2835 NC_011094.1 2734650 2735309 R methyltransferase complement(2734650..2735309) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115655.1 CDS SeSA_A2837 NC_011094.1 2735517 2736851 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2735517..2736851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115656.1 CDS SeSA_A2838 NC_011094.1 2736869 2737768 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein complement(2736869..2737768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115657.1 CDS SeSA_A2839 NC_011094.1 2737871 2738458 D identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2737871..2738458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115658.1 CDS grcA NC_011094.1 2738520 2738903 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2738520..2738903) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115659.1 CDS ung NC_011094.1 2739222 2739911 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2739222..2739911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115660.1 CDS SeSA_A2842 NC_011094.1 2740027 2741064 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase complement(2740027..2741064) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115661.1 CDS SeSA_A2843 NC_011094.1 2741268 2741687 D identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2741268..2741687 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115662.1 CDS SeSA_A2844 NC_011094.1 2741760 2742440 D identified by match to protein family HMM PF03942; DTW domain-containing protein 2741760..2742440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115663.1 CDS SeSA_A2845 NC_011094.1 2742494 2745154 D identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA binding domain/acetyltransferase domain-containing protein 2742494..2745154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115664.1 CDS pssA NC_011094.1 2745269 2746624 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2745269..2746624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115665.1 CDS SeSA_A2847 NC_011094.1 2746669 2746992 D hypothetical protein 2746669..2746992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115666.1 CDS SeSA_A2848 NC_011094.1 2746989 2748290 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter complement(2746989..2748290) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115667.1 CDS SeSA_A2849 NC_011094.1 2748394 2748849 R hypothetical protein complement(2748394..2748849) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115668.1 CDS SeSA_A2850 NC_011094.1 2749211 2749369 D identified by glimmer; hypothetical protein 2749211..2749369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115669.1 CDS SeSA_A2852 NC_011094.1 2750473 2750592 R hypothetical protein complement(2750473..2750592) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115670.1 CDS SeSA_A2855 NC_011094.1 2754662 2754778 D identified by glimmer; hypothetical protein 2754662..2754778 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115671.1 CDS clpB NC_011094.1 2754780 2757353 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; protein disaggregation chaperone complement(2754780..2757353) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115672.1 CDS SeSA_A2857 NC_011094.1 2757483 2758214 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(2757483..2758214) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115673.1 CDS rluD NC_011094.1 2758211 2759191 R 'responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA'; 23S rRNA pseudouridine synthase D complement(2758211..2759191) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115674.1 CDS SeSA_A2859 NC_011094.1 2759323 2760060 D 'with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline'; outer membrane protein assembly complex subunit YfiO 2759323..2760060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115675.1 CDS SeSA_A2860 NC_011094.1 2760332 2760670 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2760332..2760670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115676.1 CDS pheA NC_011094.1 2760921 2762081 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2760921..2762081 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115677.1 CDS SeSA_A2862 NC_011094.1 2762042 2762950 R identified by match to protein family HMM PF08450; SMP-30/gluconolaconase/LRE domain-containing protein complement(2762042..2762950) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115678.1 CDS tyrA NC_011094.1 2763008 2764129 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2763008..2764129) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115679.1 CDS aroF NC_011094.1 2764139 2765209 R 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2764139..2765209) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115680.1 CDS SeSA_A2865 NC_011094.1 2765384 2765497 R identified by glimmer; hypothetical protein complement(2765384..2765497) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115681.1 CDS SeSA_A2866 NC_011094.1 2765649 2766167 D hypothetical protein 2765649..2766167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115682.2 CDS SeSA_A2867 NC_011094.1 2766160 2767380 D identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2766160..2767380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115683.1 CDS rplS NC_011094.1 2767537 2767884 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2767537..2767884) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115684.1 CDS trmD NC_011094.1 2767925 2768692 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2767925..2768692) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115685.1 CDS rimM NC_011094.1 2768737 2769288 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2768737..2769288) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115686.1 CDS rpsP NC_011094.1 2769304 2769552 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2769304..2769552) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115687.1 CDS SeSA_A2872 NC_011094.1 2769609 2769755 R identified by glimmer; hypothetical protein complement(2769609..2769755) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115688.1 CDS ffh NC_011094.1 2769805 2771166 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2769805..2771166) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119791.1 CDS SeSA_A2874 NC_011094.1 2771332 2772123 D hypothetical protein 2771332..2772123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115689.1 CDS SeSA_A2875 NC_011094.1 2772188 2773429 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2772188..2773429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115690.1 CDS SeSA_A2876 NC_011094.1 2773550 2774155 D hypothetical protein 2773550..2774155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115691.1 CDS grpE NC_011094.1 2774190 2774780 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2774190..2774780) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115692.1 CDS ppnK NC_011094.1 2774903 2775781 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2774903..2775781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115693.1 CDS recN NC_011094.1 2775867 2777528 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2775867..2777528 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115694.1 CDS SeSA_A2880 NC_011094.1 2777677 2778015 D identified by match to protein family HMM PF04355; hypothetical protein 2777677..2778015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115695.1 CDS SeSA_A2881 NC_011094.1 2778177 2778467 R identified by match to protein family HMM PF03658; hypothetical protein complement(2778177..2778467) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115696.1 CDS SeSA_A2882 NC_011094.1 2778457 2778933 R identified by match to protein family HMM PF03364; hypothetical protein complement(2778457..2778933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115697.1 CDS smpB NC_011094.1 2779083 2779565 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 2779083..2779565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115698.1 CDS SeSA_A2884 NC_011094.1 2779612 2779728 R identified by glimmer; hypothetical protein complement(2779612..2779728) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115699.1 CDS SeSA_A2885 NC_011094.1 2779712 2779864 R identified by glimmer; hypothetical protein complement(2779712..2779864) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115700.1 CDS SeSA_A2886 NC_011094.1 2780180 2791654 D identified by match to protein family HMM TIGR01965; hypothetical protein 2780180..2791654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115701.1 CDS SeSA_A2887 NC_011094.1 2791719 2793128 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein, TolC family protein 2791719..2793128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115702.1 CDS SeSA_A2888 NC_011094.1 2793125 2795305 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR03375; protein secretion ABC efflux system, permease and ATP-binding protein 2793125..2795305 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115703.1 CDS SeSA_A2889 NC_011094.1 2795286 2796476 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein, HlyD family protein 2795286..2796476 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115704.1 CDS SeSA_A2892 NC_011094.1 2797034 2798305 D identified by match to protein family HMM PF00589; phage integrase family protein 2797034..2798305 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115705.1 CDS SeSA_A2893 NC_011094.1 2798975 2800318 R identified by glimmer; hypothetical protein complement(2798975..2800318) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115706.1 CDS SeSA_A2894 NC_011094.1 2800940 2804758 R identified by glimmer; hypothetical protein complement(2800940..2804758) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115707.1 CDS SeSA_A2895 NC_011094.1 2805837 2805980 R identified by glimmer; hypothetical protein complement(2805837..2805980) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115708.1 CDS SeSA_A2896 NC_011094.1 2806413 2807360 D hypothetical protein 2806413..2807360 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115709.1 CDS SeSA_A2897 NC_011094.1 2807754 2807978 D hypothetical protein 2807754..2807978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115710.1 CDS SeSA_A2898 NC_011094.1 2807975 2809216 D identified by match to protein family HMM PF03432; relaxase/mobilization nuclease domain-containing protein 2807975..2809216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115711.1 CDS SeSA_A2899 NC_011094.1 2809397 2809669 D hypothetical protein 2809397..2809669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115712.1 CDS SeSA_A2900 NC_011094.1 2809711 2810097 D hypothetical protein 2809711..2810097 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115713.1 CDS SeSA_A2901 NC_011094.1 2810127 2810447 D hypothetical protein 2810127..2810447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115714.1 CDS SeSA_A2902 NC_011094.1 2810601 2811023 R hypothetical protein complement(2810601..2811023) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115715.1 CDS SeSA_A2903 NC_011094.1 2811775 2811900 D identified by glimmer; hypothetical protein 2811775..2811900 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115716.1 CDS SeSA_A2904 NC_011094.1 2811947 2812510 D hypothetical protein 2811947..2812510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115717.1 CDS SeSA_A2905 NC_011094.1 2812534 2812911 D identified by glimmer; hypothetical protein 2812534..2812911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115718.1 CDS SeSA_A2906 NC_011094.1 2813037 2813345 R hypothetical protein complement(2813037..2813345) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115719.1 CDS SeSA_A2907 NC_011094.1 2813361 2813570 R identified by match to protein family HMM PF05930; hypothetical protein complement(2813361..2813570) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115720.1 CDS SeSA_A2908 NC_011094.1 2813693 2814544 R hypothetical protein complement(2813693..2814544) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115721.1 CDS SeSA_A2909 NC_011094.1 2814885 2816159 D identified by match to protein family HMM PF00078; phage-related reverse transcriptase/maturase family protein 2814885..2816159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115722.1 CDS SeSA_A2910 NC_011094.1 2816150 2818162 D hypothetical protein 2816150..2818162 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115723.2 CDS SeSA_A2911 NC_011094.1 2819742 2820281 R repressor of phase 1 flagellin gene complement(2819742..2820281) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115724.1 CDS SeSA_A2912 NC_011094.1 2820349 2821869 R 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin complement(2820349..2821869) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115725.1 CDS SeSA_A2913 NC_011094.1 2821961 2822533 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; DNA-invertase hin 2821961..2822533 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115726.1 CDS SeSA_A2914 NC_011094.1 2823209 2823391 D hypothetical protein 2823209..2823391 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115727.1 CDS SeSA_A2915 NC_011094.1 2823496 2824611 D identified by match to protein family HMM PF06722; protein IroB 2823496..2824611 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115728.1 CDS SeSA_A2916 NC_011094.1 2824692 2828348 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP-binding protein 2824692..2828348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115729.1 CDS SeSA_A2917 NC_011094.1 2828458 2829702 D identified by match to protein family HMM PF00756; enterochelin esterase 2828458..2829702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115730.1 CDS SeSA_A2918 NC_011094.1 2829734 2830669 D IroE 2829734..2830669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115731.1 CDS SeSA_A2919 NC_011094.1 2830711 2832885 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2830711..2832885) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115732.1 CDS SeSA_A2921 NC_011094.1 2833929 2835029 R identified by match to protein family HMM PF00805; effector protein pipB2 complement(2833929..2835029) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115733.1 CDS SeSA_A2922 NC_011094.1 2835499 2836428 D identified by match to protein family HMM PF04393; hypothetical protein 2835499..2836428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115734.1 CDS SeSA_A2923 NC_011094.1 2836528 2836725 D identified by glimmer; hypothetical protein 2836528..2836725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115735.1 CDS SeSA_A2924 NC_011094.1 2836722 2837618 D identified by match to protein family HMM PF07395; hypothetical protein 2836722..2837618 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115736.1 CDS SeSA_A2925 NC_011094.1 2838134 2838247 D hypothetical protein 2838134..2838247 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115737.1 CDS hoxN NC_011094.1 2838340 2839353 R identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein complement(2838340..2839353) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115738.1 CDS SeSA_A2927 NC_011094.1 2839486 2840901 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transport: regulatory protein complement(2839486..2840901) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115739.1 CDS SeSA_A2928 NC_011094.1 2840888 2841562 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein TctD complement(2840888..2841562) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115740.1 CDS SeSA_A2929 NC_011094.1 2841601 2841720 D hypothetical protein 2841601..2841720 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115741.1 CDS SeSA_A2930 NC_011094.1 2841717 2842694 D identified by match to protein family HMM PF03401; tricarboxylic transport 2841717..2842694 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115742.1 CDS SeSA_A2931 NC_011094.1 2842709 2843140 D tricarboxylic transport 2842709..2843140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115743.1 CDS SeSA_A2932 NC_011094.1 2843151 2844665 D identified by match to protein family HMM PF01970; hypothetical protein 2843151..2844665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119792.1 CDS SeSA_A2933 NC_011094.1 2844967 2845944 D hypothetical protein 2844967..2845944 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115744.1 CDS SeSA_A2934 NC_011094.1 2845970 2847238 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2845970..2847238 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115745.1 CDS gabT NC_011094.1 2848722 2850005 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2848722..2850005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115746.1 CDS gabP NC_011094.1 2850136 2851536 D identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2850136..2851536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115747.1 CDS SeSA_A2939 NC_011094.1 2851578 2852255 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2851578..2852255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115748.1 CDS SeSA_A2940 NC_011094.1 2852277 2852726 R identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein complement(2852277..2852726) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115749.1 CDS SeSA_A2941 NC_011094.1 2852826 2852984 R identified by match to protein family HMM PF01679; hypothetical protein complement(2852826..2852984) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115750.1 CDS SeSA_A2942 NC_011094.1 2853167 2853466 D identified by match to protein family HMM PF01022; regulatory protein ArsR 2853167..2853466 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115751.1 CDS SeSA_A2943 NC_011094.1 2853476 2854003 D identified by match to protein family HMM PF00581; hypothetical protein 2853476..2854003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115752.1 CDS SeSA_A2944 NC_011094.1 2854082 2854261 D hypothetical protein 2854082..2854261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115753.1 CDS SeSA_A2945 NC_011094.1 2854351 2854752 R identified by match to protein family HMM PF00816; DNA binding protein, nucleoid-associated complement(2854351..2854752) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115754.1 CDS SeSA_A2946 NC_011094.1 2855318 2855437 D identified by glimmer; hypothetical protein 2855318..2855437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115755.1 CDS SeSA_A2947 NC_011094.1 2855652 2856101 D identified by match to protein family HMM PF06610; hypothetical protein 2855652..2856101 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115756.1 CDS SeSA_A2948 NC_011094.1 2856136 2856486 R identified by match to protein family HMM PF09400; hypothetical protein complement(2856136..2856486) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115757.1 CDS SeSA_A2949 NC_011094.1 2856648 2856974 D identified by match to protein family HMM PF05957; hypothetical protein 2856648..2856974 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115758.1 CDS SeSA_A2950 NC_011094.1 2857058 2858392 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; transcriptional regulator, GntR family with aminotransferase domain complement(2857058..2858392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115759.1 CDS SeSA_A2951 NC_011094.1 2858478 2858912 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 2858478..2858912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115760.1 CDS SeSA_A2952 NC_011094.1 2858927 2859085 D hypothetical protein 2858927..2859085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115761.1 CDS SeSA_A2953 NC_011094.1 2859184 2859429 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2859184..2859429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115762.1 CDS nrdI NC_011094.1 2859426 2859836 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2859426..2859836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115763.1 CDS SeSA_A2955 NC_011094.1 2859809 2861953 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2859809..2861953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115764.1 CDS nrdF NC_011094.1 2861964 2862923 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2861964..2862923 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115765.1 CDS proV NC_011094.1 2863278 2864480 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2863278..2864480 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115766.1 CDS SeSA_A2958 NC_011094.1 2864473 2865537 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2864473..2865537 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115767.1 CDS proX NC_011094.1 2865607 2866602 D 'with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine'; glycine betaine transporter periplasmic subunit 2865607..2866602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115768.1 CDS SeSA_A2960 NC_011094.1 2866767 2867951 D identified by match to protein family HMM PF07690; major facilitator family transporter protein 2866767..2867951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115769.1 CDS mprA NC_011094.1 2868448 2868978 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2868448..2868978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115770.1 CDS emrA NC_011094.1 2869105 2870277 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 2869105..2870277 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115771.1 CDS emrB NC_011094.1 2870294 2871832 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 2870294..2871832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115772.1 CDS SeSA_A2964 NC_011094.1 2871881 2873251 R glycoporin complement(2871881..2873251) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115773.1 CDS SeSA_A2965 NC_011094.1 2873396 2873539 D hypothetical protein 2873396..2873539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115774.1 CDS luxS NC_011094.1 2873597 2874112 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2873597..2874112) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115775.1 CDS gshA NC_011094.1 2874262 2875818 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2874262..2875818) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115776.1 CDS SeSA_A2969 NC_011094.1 2875895 2876320 R hypothetical protein complement(2875895..2876320) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115777.2 CDS SeSA_A2970 NC_011094.1 2876317 2876883 R 'YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent'; fructose-1-phosphatase complement(2876317..2876883) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115778.1 CDS csrA NC_011094.1 2878145 2878330 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2878145..2878330) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115779.1 CDS alaS NC_011094.1 2878565 2881195 R 'Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; alanyl-tRNA synthetase complement(2878565..2881195) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115780.1 CDS recX NC_011094.1 2881431 2881931 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2881431..2881931) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115781.1 CDS recA NC_011094.1 2882048 2883109 R 'catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs'; recombinase A complement(2882048..2883109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115782.1 CDS SeSA_A2981 NC_011094.1 2883194 2883691 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A complement(2883194..2883691) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115783.1 CDS mltB NC_011094.1 2884169 2885248 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2884169..2885248) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115784.1 CDS SeSA_A2983 NC_011094.1 2885501 2886064 D identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; glucitol/sorbitol permease iic component 2885501..2886064 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115785.1 CDS SeSA_A2984 NC_011094.1 2886061 2887032 D identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2886061..2887032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115786.1 CDS SeSA_A2985 NC_011094.1 2887044 2887406 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2887044..2887406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115787.1 CDS srlD NC_011094.1 2887418 2888197 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2887418..2888197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115788.1 CDS SeSA_A2987 NC_011094.1 2888274 2888633 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2888274..2888633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115789.1 CDS srlR NC_011094.1 2888831 2889604 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2888831..2889604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115790.1 CDS gutQ NC_011094.1 2889597 2890562 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2889597..2890562 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115791.1 CDS SeSA_A2990 NC_011094.1 2890559 2892079 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2890559..2892079) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115792.1 CDS SeSA_A2991 NC_011094.1 2892265 2893704 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2892265..2893704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115793.1 CDS SeSA_A2992 NC_011094.1 2893701 2894834 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2893701..2894834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115794.1 CDS hypF NC_011094.1 2894931 2897171 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(2894931..2897171) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115795.1 CDS SeSA_A2994 NC_011094.1 2897317 2897862 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2897317..2897862) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115796.1 CDS SeSA_A2995 NC_011094.1 2897831 2897965 R hypothetical protein complement(2897831..2897965) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115797.1 CDS SeSA_A2996 NC_011094.1 2898063 2898872 R hypothetical protein complement(2898063..2898872) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115798.1 CDS hycI NC_011094.1 2898899 2899369 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2898899..2899369) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115799.1 CDS SeSA_A2998 NC_011094.1 2899362 2899772 R identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein complement(2899362..2899772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115800.1 CDS hycG NC_011094.1 2899769 2900536 R identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G complement(2899769..2900536) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115801.1 CDS hycF NC_011094.1 2900536 2901078 R 'electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate'; formate hydrogenlyase complex iron-sulfur subunit complement(2900536..2901078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115802.1 CDS hycE NC_011094.1 2901088 2902797 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E complement(2901088..2902797) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115803.1 CDS hycD NC_011094.1 2902815 2903738 R identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D complement(2902815..2903738) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115804.1 CDS hycC NC_011094.1 2903741 2905567 R 'catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)'; formate hydrogenlyase subunit 3 complement(2903741..2905567) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115805.1 CDS hycB NC_011094.1 2905567 2906175 R identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B complement(2905567..2906175) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115806.1 CDS SeSA_A3005 NC_011094.1 2906197 2906310 R identified by glimmer; hypothetical protein complement(2906197..2906310) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115807.1 CDS SeSA_A3006 NC_011094.1 2906321 2906782 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2906321..2906782) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115808.1 CDS hypA NC_011094.1 2906992 2907348 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2906992..2907348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115809.1 CDS hypB NC_011094.1 2907417 2908289 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2907417..2908289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115810.1 CDS hypC2 NC_011094.1 2908280 2908552 D 'HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase'; hydrogenase assembly chaperone 2908280..2908552 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115811.1 CDS hypD NC_011094.1 2908552 2909673 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2908552..2909673 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115812.1 CDS hypE NC_011094.1 2909670 2910680 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2909670..2910680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115813.1 CDS SeSA_A3012 NC_011094.1 2910899 2912977 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; formate hydrogenlyase transcriptional activator 2910899..2912977 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115814.1 CDS SeSA_A3013 NC_011094.1 2913039 2913383 R hypothetical protein complement(2913039..2913383) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115815.1 CDS SeSA_A3014 NC_011094.1 2913565 2914482 D identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 2913565..2914482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115816.1 CDS SeSA_A3015 NC_011094.1 2914479 2915300 D identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 2914479..2915300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115817.1 CDS SeSA_A3016 NC_011094.1 2915297 2916157 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 2915297..2916157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115818.1 CDS SeSA_A3017 NC_011094.1 2916148 2916996 D identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 2916148..2916996 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115819.1 CDS SeSA_A3018 NC_011094.1 2917095 2917961 R identified by match to protein family HMM PF03421; secreted effector protein complement(2917095..2917961) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115820.1 CDS SeSA_A3019 NC_011094.1 2918164 2918919 R transcriptional regulator complement(2918164..2918919) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115821.1 CDS SeSA_A3020 NC_011094.1 2919304 2920191 R identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein complement(2919304..2920191) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115822.2 CDS SeSA_A3021 NC_011094.1 2920535 2920987 R hypothetical protein complement(2920535..2920987) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119793.1 CDS SeSA_A3022 NC_011094.1 2921003 2921674 R invasion protein OrgB complement(2921003..2921674) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115823.1 CDS SeSA_A3023 NC_011094.1 2921631 2922209 R identified by match to protein family HMM PF09482; match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK complement(2921631..2922209) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115824.1 CDS SeSA_A3024 NC_011094.1 2922202 2922960 R identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family protein complement(2922202..2922960) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115825.1 CDS SeSA_A3025 NC_011094.1 2922957 2923262 R protein PrgJ complement(2922957..2923262) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115826.1 CDS eprI NC_011094.1 2923281 2923523 R identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein complement(2923281..2923523) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115827.2 CDS eprH NC_011094.1 2923548 2924726 R identified by match to protein family HMM PF09480; match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH complement(2923548..2924726) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115828.1 CDS SeSA_A3028 NC_011094.1 2925042 2925971 D identified by match to protein family HMM PF00165; transcriptional regulator HilD 2925042..2925971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115829.1 CDS SeSA_A3029 NC_011094.1 2927061 2928722 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2927061..2928722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115830.1 CDS SeSA_A3030 NC_011094.1 2928740 2929222 D identified by match to protein family HMM PF01464; invasion protein IagB 2928740..2929222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115831.1 CDS SeSA_A3031 NC_011094.1 2929276 2930883 R identified by match to protein family HMM PF00102; match to protein family HMM PF03545; match to protein family HMM PF09119; effector protein SptP complement(2929276..2930883) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115832.1 CDS SeSA_A3032 NC_011094.1 2930894 2931286 R identified by match to protein family HMM PF05932; secretion chaperone complement(2930894..2931286) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115833.1 CDS SeSA_A3033 NC_011094.1 2931313 2931537 R hypothetical protein complement(2931313..2931537) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115834.1 CDS SeSA_A3034 NC_011094.1 2931617 2931865 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2931617..2931865) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115835.1 CDS SeSA_A3035 NC_011094.1 2931884 2933896 R identified by match to protein family HMM PF09052; cell invasion protein SipA complement(2931884..2933896) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115836.1 CDS SeSA_A3036 NC_011094.1 2933960 2934982 R identified by match to protein family HMM PF06511; match to protein family HMM TIGR02553; type III effector protein IpaD/SipD/SspD complement(2933960..2934982) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119794.1 CDS SeSA_A3037 NC_011094.1 2935053 2936282 R cell invasion protein SipC complement(2935053..2936282) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115837.1 CDS SeSA_A3038 NC_011094.1 2936310 2938091 R identified by match to protein family HMM PF03518; cell invasion protein SipB complement(2936310..2938091) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115838.1 CDS SeSA_A3039 NC_011094.1 2938094 2938591 R identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD complement(2938094..2938591) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115839.1 CDS SeSA_A3040 NC_011094.1 2938729 2939799 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(2938729..2939799) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115840.1 CDS epaR NC_011094.1 2939786 2940577 R identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT complement(2939786..2940577) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115841.1 CDS SeSA_A3042 NC_011094.1 2940581 2940841 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; protein EpaQ complement(2940581..2940841) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115842.1 CDS spaP NC_011094.1 2940867 2941541 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(2940867..2941541) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115843.1 CDS epaO NC_011094.1 2941531 2942442 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(2941531..2942442) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115844.1 CDS SeSA_A3045 NC_011094.1 2942442 2943452 R identified by match to protein family HMM PF02510; antigen presentation protein SpaN complement(2942442..2943452) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115845.1 CDS SeSA_A3046 NC_011094.1 2943452 2943895 R identified by match to protein family HMM PF02090; virulence-associated secretory protein complement(2943452..2943895) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115846.1 CDS SeSA_A3047 NC_011094.1 2943873 2945168 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(2943873..2945168) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115847.1 CDS SeSA_A3048 NC_011094.1 2945165 2945572 R identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK complement(2945165..2945572) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115848.1 CDS SeSA_A3049 NC_011094.1 2945596 2947653 R identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA complement(2945596..2947653) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115849.1 CDS SeSA_A3050 NC_011094.1 2947678 2948796 R identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE complement(2947678..2948796) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115850.2 CDS SeSA_A3051 NC_011094.1 2948793 2950481 R identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore complement(2948793..2950481) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115851.1 CDS SeSA_A3052 NC_011094.1 2950478 2951227 R identified by match to protein family HMM PF00165; invasion protein complement(2950478..2951227) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115852.1 CDS SeSA_A3053 NC_011094.1 2951326 2951439 R identified by glimmer; hypothetical protein complement(2951326..2951439) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115853.1 CDS SeSA_A3054 NC_011094.1 2951585 2952028 D identified by match to protein family HMM PF04741; cell adherance/invasion protein 2951585..2952028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115854.1 CDS SeSA_A3055 NC_011094.1 2953456 2953680 R transposase complement(2953456..2953680) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115855.1 CDS SeSA_A3056 NC_011094.1 2954108 2954764 D identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 2954108..2954764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115856.2 CDS SeSA_A3057 NC_011094.1 2954936 2955457 R hypothetical protein complement(2954936..2955457) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115858.1 CDS mutS NC_011094.1 2955616 2958183 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2955616..2958183 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115859.1 CDS SeSA_A3060 NC_011094.1 2958239 2958619 R hypothetical protein complement(2958239..2958619) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115860.1 CDS SeSA_A3061 NC_011094.1 2958616 2959824 R identified by match to protein family HMM PF07690; major facilitator family transporter protein complement(2958616..2959824) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115861.1 CDS SeSA_A3062 NC_011094.1 2959933 2960844 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 2959933..2960844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115862.1 CDS SeSA_A3063 NC_011094.1 2960886 2962382 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; GntP protein complement(2960886..2962382) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115863.1 CDS SeSA_A3064 NC_011094.1 2962379 2963329 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(2962379..2963329) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115864.1 CDS SeSA_A3065 NC_011094.1 2963369 2964145 R identified by match to protein family HMM PF01261; hypothetical protein complement(2963369..2964145) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115865.1 CDS SeSA_A3066 NC_011094.1 2964150 2964788 R identified by match to protein family HMM PF00596; aldolase complement(2964150..2964788) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115866.1 CDS SeSA_A3067 NC_011094.1 2964785 2966047 R identified by match to protein family HMM PF07005; hypothetical protein complement(2964785..2966047) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115867.1 CDS SeSA_A3068 NC_011094.1 2966041 2966964 R identified by match to protein family HMM PF03446; 6-phosphogluconate dehydrogenase complement(2966041..2966964) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115868.1 CDS SeSA_A3069 NC_011094.1 2967161 2967925 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; transcriptional regulator, DeoR family protein 2967161..2967925 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115869.1 CDS SeSA_A3070 NC_011094.1 2967944 2968348 R identified by match to protein family HMM PF01047; transcriptional regulator HosA complement(2967944..2968348) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115870.1 CDS kpdB NC_011094.1 2968519 2969112 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 2968519..2969112 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115871.1 CDS kpdC NC_011094.1 2969112 2970539 D identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 2969112..2970539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115872.1 CDS kpdD NC_011094.1 2970550 2970786 D 4-hydroxybenzoate decarboxylase subunit D 2970550..2970786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115873.1 CDS rpoS NC_011094.1 2970832 2971824 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(2970832..2971824) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115874.1 CDS nlpD NC_011094.1 2971887 2973020 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(2971887..2973020) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115875.1 CDS pcm NC_011094.1 2973196 2973822 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(2973196..2973822) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115876.1 CDS surE NC_011094.1 2973816 2974577 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2973816..2974577) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115877.1 CDS truD NC_011094.1 2974558 2975607 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(2974558..2975607) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115878.1 CDS ispF NC_011094.1 2975604 2976083 R 'catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate'; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2975604..2976083) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115879.1 CDS ispD NC_011094.1 2976083 2976793 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2976083..2976793) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115880.1 CDS ftsB NC_011094.1 2976812 2977123 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(2976812..2977123) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115881.2 CDS SeSA_A3083 NC_011094.1 2977314 2977670 R hypothetical protein complement(2977314..2977670) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115882.1 CDS cysC NC_011094.1 2977688 2978293 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(2977688..2978293) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115883.1 CDS cysN NC_011094.1 2978280 2979719 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(2978280..2979719) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115884.1 CDS cysD NC_011094.1 2979729 2980637 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(2979729..2980637) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115885.1 CDS SeSA_A3087 NC_011094.1 2980888 2981934 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 2980888..2981934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115887.1 CDS SeSA_A3091 NC_011094.1 2982794 2983087 R hypothetical protein complement(2982794..2983087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115888.1 CDS cas NC_011094.1 2983090 2984007 R identified by match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 complement(2983090..2984007) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115889.1 CDS cse NC_011094.1 2984004 2984711 R identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; CRISPR-associated protein, Cse3 family protein complement(2984004..2984711) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115890.1 CDS cas5 NC_011094.1 2984711 2985436 R identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5 complement(2984711..2985436) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115891.1 CDS cse4 NC_011094.1 2985446 2986504 R identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869; CRISPR-associated protein, Cse4 family protein complement(2985446..2986504) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115892.1 CDS cse2 NC_011094.1 2986527 2987129 R identified by match to protein family HMM PF09485; match to protein family HMM TIGR02548; CRISPR-associated protein, Cse2 family protein complement(2986527..2987129) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115893.1 CDS cse NC_011094.1 2987146 2988681 R identified by match to protein family HMM PF09481; match to protein family HMM TIGR02547; CRISPR-associated protein, Cse1 family protein complement(2987146..2988681) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119795.1 CDS SeSA_A3098 NC_011094.1 2989243 2991942 D CRISPR-associated endonuclease/helicase Cas3 2989243..2991942 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115894.2 CDS SeSA_A3099 NC_011094.1 2992326 2993279 D Sop effector protein SopD 2992326..2993279 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115895.1 CDS cysH NC_011094.1 2993367 2994101 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2993367..2994101) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115896.1 CDS cysI NC_011094.1 2994177 2995889 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(2994177..2995889) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115897.1 CDS cysJ NC_011094.1 2995889 2997688 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(2995889..2997688) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115898.1 CDS queD NC_011094.1 2998124 2998486 D identified by match to protein family HMM PF01242; match to protein family HMM TIGR00039; match to protein family HMM TIGR03367; queuosine biosynthesis protein QueD 2998124..2998486 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115899.1 CDS SeSA_A3104 NC_011094.1 2998574 2999371 R identified by match to protein family HMM PF00753; beta-lactamase domain-containing protein complement(2998574..2999371) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115900.1 CDS SeSA_A3106 NC_011094.1 3000197 3000310 D hypothetical protein 3000197..3000310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115901.1 CDS SeSA_A3108 NC_011094.1 3000654 3000800 R identified by glimmer; hypothetical protein complement(3000654..3000800) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115902.1 CDS SeSA_A3109 NC_011094.1 3000831 3001502 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3000831..3001502) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115903.1 CDS eno NC_011094.1 3001638 3002936 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3001638..3002936) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115904.1 CDS pyrG NC_011094.1 3003019 3004656 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3003019..3004656) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115905.1 CDS mazG NC_011094.1 3004884 3005684 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3004884..3005684) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115906.1 CDS SeSA_A3113 NC_011094.1 3006452 3006748 R identified by match to protein family HMM PF05016; RelE/ParE family plasmid stabilization system protein complement(3006452..3006748) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115907.1 CDS SeSA_A3114 NC_011094.1 3006714 3007001 R identified by match to protein family HMM PF01402; match to protein family HMM PF03693; match to protein family HMM TIGR02606; addiction module antidote protein, family protein complement(3006714..3007001) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115908.1 CDS relA NC_011094.1 3007155 3009389 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3007155..3009389) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115909.1 CDS rumA NC_011094.1 3009441 3010736 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3009441..3010736) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115910.1 CDS SeSA_A3117 NC_011094.1 3010794 3013550 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3010794..3013550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115911.1 CDS SeSA_A3118 NC_011094.1 3013594 3014736 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(3013594..3014736) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115912.1 CDS SeSA_A3119 NC_011094.1 3014814 3016154 R identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase complement(3014814..3016154) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115913.1 CDS SeSA_A3120 NC_011094.1 3016175 3017515 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; glucarate dehydratase complement(3016175..3017515) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115914.1 CDS gudP NC_011094.1 3017512 3018870 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease complement(3017512..3018870) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115915.1 CDS SeSA_A3123 NC_011094.1 3019352 3019801 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(3019352..3019801) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115916.1 CDS SeSA_A3124 NC_011094.1 3019820 3020602 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3019820..3020602) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115917.1 CDS SeSA_A3125 NC_011094.1 3020602 3020931 R identified by match to protein family HMM PF04287; hypothetical protein complement(3020602..3020931) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115918.1 CDS SeSA_A3127 NC_011094.1 3021543 3022088 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3021543..3022088) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115919.1 CDS queF NC_011094.1 3022157 3023005 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3022157..3023005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115920.1 CDS SeSA_A3129 NC_011094.1 3023119 3024483 D identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3023119..3024483 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115921.1 CDS SeSA_A3130 NC_011094.1 3025048 3026337 D identified by match to protein family HMM TIGR00814; serine transporter family protein 3025048..3026337 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115922.1 CDS SeSA_A3131 NC_011094.1 3026396 3027763 D identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3026396..3027763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115923.2 CDS xni NC_011094.1 3027873 3028688 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3027873..3028688 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115924.1 CDS fucO NC_011094.1 3028780 3029928 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase complement(3028780..3029928) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115925.1 CDS fucA NC_011094.1 3029945 3030592 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3029945..3030592) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115926.1 CDS SeSA_A3135 NC_011094.1 3030746 3030913 R hypothetical protein complement(3030746..3030913) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115927.1 CDS SeSA_A3136 NC_011094.1 3031000 3031122 R identified by glimmer; hypothetical protein complement(3031000..3031122) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115928.1 CDS fucP NC_011094.1 3031148 3032464 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3031148..3032464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115929.1 CDS fucI NC_011094.1 3032496 3034271 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3032496..3034271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115930.1 CDS fucK NC_011094.1 3034372 3035790 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3034372..3035790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115931.1 CDS SeSA_A3140 NC_011094.1 3035792 3036214 D identified by match to protein family HMM PF05025; fuscose operon FucU protein 3035792..3036214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115932.1 CDS SeSA_A3141 NC_011094.1 3036272 3036982 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3036272..3036982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115933.1 CDS SeSA_A3142 NC_011094.1 3037041 3038141 R RNA 2'-O-ribose methyltransferase complement(3037041..3038141) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115934.1 CDS SeSA_A3143 NC_011094.1 3038134 3038529 R identified by match to protein family HMM PF04241; hypothetical protein complement(3038134..3038529) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115935.1 CDS gcvA NC_011094.1 3038548 3039465 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3038548..3039465) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115936.1 CDS SeSA_A3146 NC_011094.1 3039812 3040039 R identified by match to protein family HMM PF06004; lipoprotein complement(3039812..3040039) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115937.1 CDS csdA NC_011094.1 3040232 3041437 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392; cysteine sulfinate desulfinase 3040232..3041437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115938.1 CDS csdE NC_011094.1 3041437 3041880 D identified by match to protein family HMM PF02657; match to protein family HMM TIGR03391; cysteine desulfurase, sulfur acceptor subunit CsdE 3041437..3041880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115939.1 CDS rarD NC_011094.1 3042153 3043067 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3042153..3043067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115940.1 CDS SeSA_A3150 NC_011094.1 3043119 3043925 R identified by match to protein family HMM PF00899; ThiF family protein complement(3043119..3043925) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119796.1 CDS SeSA_A3151 NC_011094.1 3044035 3045132 R membrane-bound lytic murein transglycosylase A complement(3044035..3045132) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119797.1 CDS SeSA_A3154 NC_011094.1 3045632 3046885 R N-acetylmuramoyl-L-alanine amidase AmiC complement(3045632..3046885) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115941.1 CDS argA NC_011094.1 3047118 3048449 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3047118..3048449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115942.1 CDS recD NC_011094.1 3048552 3050387 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3048552..3050387) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115943.1 CDS recB NC_011094.1 3050384 3053929 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3050384..3053929) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115944.1 CDS SeSA_A3158 NC_011094.1 3053922 3056810 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 complement(3053922..3056810) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115945.1 CDS recC NC_011094.1 3056988 3060359 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3056988..3060359) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115946.2 CDS SeSA_A3160 NC_011094.1 3060375 3060695 R hypothetical protein complement(3060375..3060695) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115947.1 CDS SeSA_A3161 NC_011094.1 3060680 3061087 R alternate name YgdB, URF2; orf of X03966; 2nd start; ORF_f121; hypothetical protein complement(3060680..3061087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115948.1 CDS SeSA_A3162 NC_011094.1 3061084 3061608 R hypothetical protein complement(3061084..3061608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115949.1 CDS SeSA_A3163 NC_011094.1 3061638 3062108 R identified by match to protein family HMM TIGR02532; hypothetical protein complement(3061638..3062108) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115950.1 CDS SeSA_A3164 NC_011094.1 3062118 3062300 D hypothetical protein 3062118..3062300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115951.1 CDS thyA NC_011094.1 3062293 3063087 R 'ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived'; thymidylate synthase complement(3062293..3063087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115952.1 CDS lgt NC_011094.1 3063094 3063969 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3063094..3063969) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115953.1 CDS ptsP NC_011094.1 3064185 3066431 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein complement(3064185..3066431) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115954.1 CDS nudH NC_011094.1 3066444 3066974 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3066444..3066974) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115955.1 CDS mutH NC_011094.1 3067657 3068352 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3067657..3068352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115956.1 CDS SeSA_A3170 NC_011094.1 3068401 3068562 D identified by glimmer; hypothetical protein 3068401..3068562 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115957.1 CDS SeSA_A3171 NC_011094.1 3068534 3069247 D identified by match to protein family HMM PF03741; hypothetical protein 3068534..3069247 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115958.1 CDS SeSA_A3172 NC_011094.1 3069417 3069635 D identified by match to protein family HMM PF06004; hypothetical protein 3069417..3069635 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115959.1 CDS tas NC_011094.1 3069826 3070866 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3069826..3070866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115960.1 CDS SeSA_A3174 NC_011094.1 3070953 3072155 R identified by match to protein family HMM PF07690; lysophospholipid transporter LplT complement(3070953..3072155) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115961.1 CDS SeSA_A3175 NC_011094.1 3072148 3074307 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3072148..3074307) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115962.1 CDS SeSA_A3179 NC_011094.1 3074776 3074910 R hypothetical protein complement(3074776..3074910) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115963.1 CDS SeSA_A3178 NC_011094.1 3074900 3075928 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3074900..3075928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115964.1 CDS SeSA_A3180 NC_011094.1 3075942 3076961 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3075942..3076961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115965.1 CDS lysA NC_011094.1 3076971 3078233 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3076971..3078233) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115966.1 CDS SeSA_A3182 NC_011094.1 3078351 3079286 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3078351..3079286 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115967.1 CDS SeSA_A3183 NC_011094.1 3079258 3079965 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase complement(3079258..3079965) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115968.1 CDS SeSA_A3184 NC_011094.1 3080078 3081496 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein complement(3080078..3081496) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115969.1 CDS kduD NC_011094.1 3081848 3082609 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3081848..3082609) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115970.1 CDS kduI NC_011094.1 3082666 3083502 R '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate'; 5-keto-4-deoxyuronate isomerase complement(3082666..3083502) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115971.1 CDS SeSA_A3187 NC_011094.1 3083493 3083663 R identified by glimmer; hypothetical protein complement(3083493..3083663) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115972.1 CDS SeSA_A3188 NC_011094.1 3083932 3085110 R 'Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis'; acetyl-CoA acetyltransferase complement(3083932..3085110) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115973.1 CDS SeSA_A3189 NC_011094.1 3085233 3086096 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein complement(3085233..3086096) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115974.1 CDS SeSA_A3190 NC_011094.1 3086200 3086655 D identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3086200..3086655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115975.1 CDS SeSA_A3191 NC_011094.1 3086797 3088026 D inner membrane transport protein YqeG 3086797..3088026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115976.1 CDS SeSA_A3192 NC_011094.1 3088057 3088329 R identified by match to protein family HMM PF02583; hypothetical protein complement(3088057..3088329) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115977.1 CDS SeSA_A3193 NC_011094.1 3088451 3089299 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3088451..3089299 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115978.1 CDS SeSA_A3194 NC_011094.1 3089509 3090267 R hypothetical protein complement(3089509..3090267) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115979.1 CDS SeSA_A3195 NC_011094.1 3090254 3090760 R identified by match to protein family HMM PF07180; hypothetical protein complement(3090254..3090760) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_003495234.1 CDS SeSA_A3196 NC_011094.1 3090870 3091952 R hypothetical protein complement(3090870..3091952) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115980.1 CDS SeSA_A3197 NC_011094.1 3091949 3092692 R identified by match to protein family HMM PF00345; pili assembly chaperone protein complement(3091949..3092692) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115981.1 CDS SeSA_A3198 NC_011094.1 3092733 3095222 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(3092733..3095222) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115982.1 CDS SeSA_A3199 NC_011094.1 3095342 3095929 R identified by match to protein family HMM PF00419; fimbrial protein complement(3095342..3095929) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115983.1 CDS SeSA_A3200 NC_011094.1 3096648 3097280 R hypothetical protein complement(3096648..3097280) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115984.1 CDS SeSA_A3201 NC_011094.1 3097327 3097863 R identified by match to protein family HMM PF06316; outer membrane protein complement(3097327..3097863) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115985.1 CDS SeSA_A3202 NC_011094.1 3097909 3098094 R hypothetical protein complement(3097909..3098094) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115986.1 CDS SeSA_A3204 NC_011094.1 3098845 3099078 R identified by glimmer; hypothetical protein complement(3098845..3099078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115987.1 CDS SeSA_A3203 NC_011094.1 3099037 3099837 D identified by match to protein family HMM PF07313; hypothetical protein 3099037..3099837 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115988.1 CDS SeSA_A3206 NC_011094.1 3100112 3100864 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein complement(3100112..3100864) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115989.1 CDS idi NC_011094.1 3101135 3101680 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3101135..3101680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115990.1 CDS lysS NC_011094.1 3101756 3103273 R 'class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1'; lysyl-tRNA synthetase complement(3101756..3103273) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119798.1 CDS prfB NC_011094.1 3103283 3104164 R peptide chain release factor complement(3103283..3104164) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115991.1 CDS recJ NC_011094.1 3104486 3106219 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3104486..3106219) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115992.1 CDS SeSA_A3211 NC_011094.1 3106225 3106938 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3106225..3106938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115993.1 CDS xerD NC_011094.1 3106962 3107858 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(3106962..3107858) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115994.1 CDS SeSA_A3213 NC_011094.1 3107971 3108492 D 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic'; flavodoxin FldB 3107971..3108492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115995.1 CDS SeSA_A3214 NC_011094.1 3108545 3108958 R identified by match to protein family HMM PF07254; hypothetical protein complement(3108545..3108958) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115996.1 CDS SeSA_A3216 NC_011094.1 3108939 3109205 R identified by match to protein family HMM PF03937; hypothetical protein complement(3108939..3109205) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115997.1 CDS SeSA_A3217 NC_011094.1 3109455 3110435 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3109455..3110435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115998.1 CDS SeSA_A3218 NC_011094.1 3110551 3111210 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 complement(3110551..3111210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002115999.1 CDS SeSA_A3219 NC_011094.1 3111374 3111685 R identified by match to protein family HMM PF04266; hypothetical protein complement(3111374..3111685) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116000.1 CDS SeSA_A3220 NC_011094.1 3111843 3113276 D identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3111843..3113276 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116001.1 CDS SeSA_A3221 NC_011094.1 3113324 3114262 R outer membrane protein complement(3113324..3114262) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116002.1 CDS gcvH NC_011094.1 3117708 3118097 R 'part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor'; glycine cleavage system protein H complement(3117708..3118097) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116003.1 CDS gcvT NC_011094.1 3118123 3119217 R 'catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein'; glycine cleavage system aminomethyltransferase T complement(3118123..3119217) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116004.1 CDS SeSA_A3226 NC_011094.1 3119258 3119398 D identified by glimmer; hypothetical protein 3119258..3119398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116005.1 CDS SeSA_A3227 NC_011094.1 3119672 3120874 R identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein complement(3119672..3120874) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116006.1 CDS ubiH NC_011094.1 3121000 3122178 R 'Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone'; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3121000..3122178) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116007.1 CDS pepP NC_011094.1 3122175 3123491 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3122175..3123491) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116008.1 CDS SeSA_A3230 NC_011094.1 3123517 3124095 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3123517..3124095) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116009.2 CDS SeSA_A3231 NC_011094.1 3124262 3124591 D hypothetical protein 3124262..3124591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116010.1 CDS SeSA_A3233 NC_011094.1 3124837 3125433 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3124837..3125433 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116011.1 CDS serA NC_011094.1 3125814 3127046 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3125814..3127046) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119799.1 CDS rpiA NC_011094.1 3127313 3127972 R ribose 5-phosphate isomerase A complement(3127313..3127972) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116012.1 CDS SeSA_A3237 NC_011094.1 3128126 3129019 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3128126..3129019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116013.1 CDS SeSA_A3238 NC_011094.1 3129187 3129933 R identified by match to protein family HMM PF04402; hypothetical protein complement(3129187..3129933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116014.1 CDS SeSA_A3239 NC_011094.1 3130027 3130662 R Involved in the export of arginine; arginine exporter protein complement(3130027..3130662) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116015.1 CDS SeSA_A3240 NC_011094.1 3130863 3131723 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS complement(3130863..3131723) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116016.1 CDS fbaA NC_011094.1 3131946 3133025 R 'catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate'; fructose-bisphosphate aldolase complement(3131946..3133025) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116017.1 CDS pgk NC_011094.1 3133127 3134290 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3133127..3134290) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116018.1 CDS epd NC_011094.1 3134312 3135358 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3134312..3135358) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116019.1 CDS SeSA_A3244 NC_011094.1 3135732 3136157 D identified by match to protein family HMM PF03479; hypothetical protein 3135732..3136157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116020.1 CDS SeSA_A3245 NC_011094.1 3136183 3136761 D signal transduction histidine kinase, LytS 3136183..3136761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116021.1 CDS SeSA_A3246 NC_011094.1 3136762 3137469 D identified by match to protein family HMM PF02361; ABC transporter permease 3136762..3137469 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116022.1 CDS SeSA_A3247 NC_011094.1 3137457 3138134 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3137457..3138134 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116023.1 CDS SeSA_A3248 NC_011094.1 3138128 3138817 D identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3138128..3138817 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116024.1 CDS frcK NC_011094.1 3138786 3139502 R fructose transport system kinase complement(3138786..3139502) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116025.1 CDS SeSA_A3250 NC_011094.1 3139487 3140008 R identified by match to protein family HMM PF05068; DNA-binding transcriptional regulator complement(3139487..3140008) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116026.1 CDS glpX NC_011094.1 3140222 3141193 R identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330; fructose-1,6-bisphosphatase II-like protein complement(3140222..3141193) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116027.1 CDS SeSA_A3252 NC_011094.1 3141190 3142464 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-sorbose 1-phosphate reductase complement(3141190..3142464) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116028.1 CDS SeSA_A3253 NC_011094.1 3142488 3143867 R identified by match to protein family HMM PF02302; match to protein family HMM PF02378; PTS system mannitol-specific transporter subunit IICBA complement(3142488..3143867) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116029.1 CDS cmtB NC_011094.1 3143895 3144338 R 'TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein'; mannitol phosphotransferase subunit EIIA complement(3143895..3144338) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116030.1 CDS SeSA_A3255 NC_011094.1 3144481 3144636 R identified by glimmer; hypothetical protein complement(3144481..3144636) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116031.1 CDS tktA NC_011094.1 3144650 3146641 R 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase complement(3144650..3146641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119800.1 CDS SeSA_A3257 NC_011094.1 3146917 3147675 D peptidase 3146917..3147675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116032.1 CDS speB NC_011094.1 3147776 3148696 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3147776..3148696) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116033.1 CDS SeSA_A3259 NC_011094.1 3148693 3148833 R identified by glimmer; hypothetical protein complement(3148693..3148833) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116034.2 CDS speA NC_011094.1 3148924 3150900 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3148924..3150900) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116035.1 CDS SeSA_A3261 NC_011094.1 3150909 3151040 R hypothetical protein complement(3150909..3151040) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116036.1 CDS SeSA_A3262 NC_011094.1 3151374 3151541 D hypothetical protein 3151374..3151541 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116037.1 CDS metK NC_011094.1 3151690 3152844 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3151690..3152844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116038.1 CDS SeSA_A3264 NC_011094.1 3152872 3152997 R identified by glimmer; hypothetical protein complement(3152872..3152997) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116039.1 CDS galP NC_011094.1 3153337 3154731 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3153337..3154731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116040.1 CDS sprT NC_011094.1 3154810 3155307 D identified by match to protein family HMM PF03926; hypothetical protein 3154810..3155307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116041.1 CDS endA NC_011094.1 3155402 3156109 D identified by match to protein family HMM PF04231; endonuclease I 3155402..3156109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116042.1 CDS SeSA_A3268 NC_011094.1 3156138 3156917 D 'in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase'; 16S ribosomal RNA methyltransferase RsmE 3156138..3156917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116043.1 CDS gshB NC_011094.1 3156937 3157884 D 'catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione'; glutathione synthetase 3156937..3157884 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116044.1 CDS SeSA_A3270 NC_011094.1 3158100 3158663 D identified by match to protein family HMM PF02622; hypothetical protein 3158100..3158663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116045.1 CDS SeSA_A3271 NC_011094.1 3158663 3159079 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 3158663..3159079 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116046.1 CDS SeSA_A3272 NC_011094.1 3159126 3159812 R identified by match to protein family HMM PF09339; regulatory protein IclR complement(3159126..3159812) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116047.1 CDS SeSA_A3273 NC_011094.1 3159940 3160920 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein complement(3159940..3160920) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116048.1 CDS SeSA_A3274 NC_011094.1 3160938 3161642 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase 3160938..3161642 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116049.1 CDS SeSA_A3275 NC_011094.1 3161661 3162227 D identified by match to protein family HMM PF02325; hypothetical protein 3161661..3162227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116050.1 CDS SeSA_A3276 NC_011094.1 3162224 3162514 D identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3162224..3162514 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116051.1 CDS rdgB NC_011094.1 3162522 3163115 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3162522..3163115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116052.1 CDS SeSA_A3278 NC_011094.1 3163108 3164244 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3163108..3164244 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116053.1 CDS SeSA_A3279 NC_011094.1 3164335 3165342 R identified by match to protein family HMM PF06717; hypothetical protein complement(3164335..3165342) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116054.1 CDS ansB NC_011094.1 3165475 3166521 R 'catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis'; L-asparaginase II complement(3165475..3166521) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116055.1 CDS SeSA_A3281 NC_011094.1 3166710 3167429 R hypothetical protein complement(3166710..3167429) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116056.1 CDS SeSA_A3282 NC_011094.1 3167479 3167805 R identified by match to protein family HMM PF04320; hypothetical protein complement(3167479..3167805) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116057.1 CDS trmB NC_011094.1 3167805 3168524 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3167805..3168524) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116058.1 CDS mutY NC_011094.1 3168679 3169731 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3168679..3169731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116059.1 CDS SeSA_A3285 NC_011094.1 3169759 3170034 D identified by match to protein family HMM PF04362; hypothetical protein 3169759..3170034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116060.1 CDS mltC NC_011094.1 3170147 3171232 D 'Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues'; murein transglycosylase C 3170147..3171232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116061.1 CDS SeSA_A3287 NC_011094.1 3171184 3171303 R identified by glimmer; hypothetical protein complement(3171184..3171303) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116062.1 CDS nupG NC_011094.1 3171449 3172705 D identified by match to protein family HMM PF03825; match to protein family HMM TIGR00889; nucleoside permease NupG 3171449..3172705 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116063.1 CDS speC NC_011094.1 3172767 3174902 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase complement(3172767..3174902) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116064.1 CDS SeSA_A3290 NC_011094.1 3175176 3175289 D identified by glimmer; hypothetical protein 3175176..3175289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116065.1 CDS SeSA_A3291 NC_011094.1 3175328 3176035 D identified by match to protein family HMM PF04474; hypothetical protein 3175328..3176035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116066.1 CDS SeSA_A3293 NC_011094.1 3176819 3178144 R identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase complement(3176819..3178144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116067.1 CDS SeSA_A3294 NC_011094.1 3178169 3178696 R identified by match to protein family HMM PF01575; FkbR2 complement(3178169..3178696) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116068.1 CDS SeSA_A3295 NC_011094.1 3178720 3179562 R identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein complement(3178720..3179562) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116069.1 CDS SeSA_A3296 NC_011094.1 3179654 3180532 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; StmR 3179654..3180532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116070.1 CDS SeSA_A3297 NC_011094.1 3180580 3182319 R identified by match to protein family HMM PF00884; arylsulfatase complement(3180580..3182319) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116071.1 CDS SeSA_A3298 NC_011094.1 3182388 3183572 R identified by match to protein family HMM PF04055; arylsulfatase complement(3182388..3183572) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116072.1 CDS SeSA_A3299 NC_011094.1 3184084 3184767 D identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3184084..3184767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116073.1 CDS SeSA_A3300 NC_011094.1 3184872 3185429 R hypothetical protein complement(3184872..3185429) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116074.1 CDS SeSA_A3301 NC_011094.1 3185407 3186906 R identified by match to protein family HMM PF00324; transporter complement(3185407..3186906) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116075.1 CDS SeSA_A3302 NC_011094.1 3186899 3187042 R identified by glimmer; hypothetical protein complement(3186899..3187042) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116076.1 CDS SeSA_A3303 NC_011094.1 3187115 3187489 R identified by match to protein family HMM PF05899; hypothetical protein complement(3187115..3187489) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116077.1 CDS SeSA_A3304 NC_011094.1 3187504 3188805 R identified by match to protein family HMM PF01266; tyramine oxidase complement(3187504..3188805) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116078.1 CDS SeSA_A3305 NC_011094.1 3188967 3190451 D identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3188967..3190451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116079.2 CDS iraD NC_011094.1 3190587 3190970 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein complement(3190587..3190970) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116080.1 CDS SeSA_A3308 NC_011094.1 3190967 3191452 R identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hypothetical protein complement(3190967..3191452) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116081.1 CDS SeSA_A3307 NC_011094.1 3191451 3191606 D identified by glimmer; hypothetical protein 3191451..3191606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116082.1 CDS SeSA_A3309 NC_011094.1 3191760 3191915 D hypothetical protein 3191760..3191915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116083.1 CDS SeSA_A3310 NC_011094.1 3192178 3193101 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(3192178..3193101) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116084.1 CDS SeSA_A3311 NC_011094.1 3193140 3194018 R identified by match to protein family HMM PF00795; amidohydrolase complement(3193140..3194018) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116085.1 CDS SeSA_A3312 NC_011094.1 3194331 3194927 R identified by match to protein family HMM PF00440; transcriptional regulator UidR complement(3194331..3194927) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116086.1 CDS SeSA_A3313 NC_011094.1 3195302 3197113 D identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; beta-D-glucuronidase 3195302..3197113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116087.1 CDS SeSA_A3314 NC_011094.1 3197110 3198483 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; glucuronide transporter 3197110..3198483 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116088.1 CDS SeSA_A3315 NC_011094.1 3198519 3199784 D outer membrane porin protein 3198519..3199784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116089.1 CDS exuT NC_011094.1 3199864 3201168 R identified by match to protein family HMM PF07690; hexuronate transporter complement(3199864..3201168) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116090.1 CDS uxuA NC_011094.1 3201573 3202757 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3201573..3202757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116091.1 CDS SeSA_A3318 NC_011094.1 3202868 3204340 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3202868..3204340 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116092.1 CDS uxaC NC_011094.1 3204352 3205764 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3204352..3205764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116093.1 CDS SeSA_A3320 NC_011094.1 3206064 3207119 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(3206064..3207119) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116094.1 CDS SeSA_A3321 NC_011094.1 3207789 3209645 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3207789..3209645) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116095.1 CDS SeSA_A3322 NC_011094.1 3209872 3210738 D YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3209872..3210738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116096.1 CDS SeSA_A3323 NC_011094.1 3210806 3211519 R molybdate ABC transporter substrate-binding protein complement(3210806..3211519) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116097.1 CDS SeSA_A3324 NC_011094.1 3211516 3212568 R identified by match to protein family HMM PF01497; periplasmic binding protein complement(3211516..3212568) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116098.1 CDS hypC NC_011094.1 3212644 3212892 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG complement(3212644..3212892) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116099.1 CDS hypA NC_011094.1 3212920 3213261 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3212920..3213261) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116100.1 CDS SeSA_A3327 NC_011094.1 3213254 3213742 R hydrogenase 2-specific chaperone complement(3213254..3213742) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116101.1 CDS hybD NC_011094.1 3213735 3214229 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3213735..3214229) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116102.1 CDS hybC NC_011094.1 3214229 3215932 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3214229..3215932) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116103.1 CDS hybB NC_011094.1 3215929 3217107 R 'HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits'; hydrogenase 2 b cytochrome subunit complement(3215929..3217107) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116104.1 CDS hybA NC_011094.1 3217097 3218083 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3217097..3218083) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116105.1 CDS hyb0 NC_011094.1 3218086 3219204 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3218086..3219204) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116106.1 CDS SeSA_A3333 NC_011094.1 3219212 3219397 R hypothetical protein complement(3219212..3219397) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116107.1 CDS SeSA_A3334 NC_011094.1 3219394 3219681 R hypothetical protein complement(3219394..3219681) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116108.1 CDS SeSA_A3335 NC_011094.1 3219766 3221409 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(3219766..3221409) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116109.1 CDS SeSA_A3336 NC_011094.1 3221716 3222210 R identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein complement(3221716..3222210) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116110.1 CDS SeSA_A3337 NC_011094.1 3222428 3222931 R hypothetical protein complement(3222428..3222931) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116111.1 CDS SeSA_A3338 NC_011094.1 3223035 3223445 D hypothetical protein 3223035..3223445 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116112.1 CDS SeSA_A3339 NC_011094.1 3223432 3223836 D hypothetical protein 3223432..3223836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116113.1 CDS SeSA_A3340 NC_011094.1 3223960 3224844 D identified by match to protein family HMM PF00106; oxidoreductase 3223960..3224844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116114.1 CDS exbD NC_011094.1 3224957 3225382 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3224957..3225382) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116115.1 CDS exbB NC_011094.1 3225389 3226123 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3225389..3226123) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116116.1 CDS SeSA_A3343 NC_011094.1 3226116 3226253 R hypothetical protein complement(3226116..3226253) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116117.1 CDS metC NC_011094.1 3226375 3227562 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3226375..3227562 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116118.1 CDS SeSA_A3345 NC_011094.1 3227702 3228361 D identified by match to protein family HMM PF09335; hypothetical protein 3227702..3228361 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119801.1 CDS SeSA_A3346 NC_011094.1 3228425 3229324 R transcriptional regulator complement(3228425..3229324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116119.1 CDS SeSA_A3347 NC_011094.1 3229314 3229430 R identified by glimmer; hypothetical protein complement(3229314..3229430) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116120.1 CDS SeSA_A3348 NC_011094.1 3229517 3230680 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 3229517..3230680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116121.1 CDS dkgA NC_011094.1 3230786 3231613 D 'methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate'; 2,5-diketo-D-gluconate reductase A 3230786..3231613 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116122.1 CDS SeSA_A3351 NC_011094.1 3233309 3233764 D identified by match to protein family HMM PF01230; histidine triad (HIT) protein 3233309..3233764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116123.1 CDS SeSA_A3352 NC_011094.1 3233900 3236071 R identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein complement(3233900..3236071) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116124.1 CDS SeSA_A3353 NC_011094.1 3236206 3237627 R hypothetical protein complement(3236206..3237627) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116125.1 CDS SeSA_A3354 NC_011094.1 3237692 3239116 R hypothetical protein complement(3237692..3239116) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116126.1 CDS SeSA_A3355 NC_011094.1 3239132 3240553 R hypothetical protein complement(3239132..3240553) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116127.1 CDS SeSA_A3358 NC_011094.1 3241623 3243035 R identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI complement(3241623..3243035) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116128.1 CDS plsC NC_011094.1 3243109 3243846 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3243109..3243846) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116129.1 CDS parC NC_011094.1 3244102 3246360 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3244102..3246360) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116130.1 CDS SeSA_A3361 NC_011094.1 3246490 3246882 R identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein complement(3246490..3246882) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116131.1 CDS SeSA_A3362 NC_011094.1 3247034 3247693 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3247034..3247693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116132.1 CDS SeSA_A3363 NC_011094.1 3247690 3249039 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3247690..3249039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116133.1 CDS SeSA_A3364 NC_011094.1 3249146 3249727 D identified by match to protein family HMM PF02525; NADPH-specific quinone oxidoreductase 3249146..3249727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116134.1 CDS SeSA_A3365 NC_011094.1 3249759 3250073 D identified by match to protein family HMM PF03992; hypothetical protein 3249759..3250073 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116135.1 CDS SeSA_A3366 NC_011094.1 3250078 3250194 R identified by glimmer; hypothetical protein complement(3250078..3250194) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116136.1 CDS parE NC_011094.1 3250198 3252090 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3250198..3252090) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116137.1 CDS yqiA NC_011094.1 3252118 3252699 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(3252118..3252699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116138.1 CDS icc NC_011094.1 3252699 3253526 R identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3252699..3253526) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116139.1 CDS SeSA_A3370 NC_011094.1 3253551 3253973 R identified by match to protein family HMM PF06853; hypothetical protein complement(3253551..3253973) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116140.1 CDS nudF NC_011094.1 3253970 3254602 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase complement(3253970..3254602) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116141.1 CDS tolC NC_011094.1 3254809 3256278 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3254809..3256278 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116142.1 CDS SeSA_A3373 NC_011094.1 3256491 3257162 D hypothetical protein 3256491..3257162 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116143.1 CDS SeSA_A3374 NC_011094.1 3257168 3258331 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3257168..3258331 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116144.1 CDS SeSA_A3375 NC_011094.1 3258393 3259181 R 'seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine'; hypothetical protein complement(3258393..3259181) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116145.1 CDS SeSA_A3376 NC_011094.1 3259322 3260095 D identified by match to protein family HMM PF02535; zinc transporter ZupT 3259322..3260095 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116146.1 CDS SeSA_A3377 NC_011094.1 3260162 3260338 R hypothetical protein complement(3260162..3260338) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116147.1 CDS SeSA_A3378 NC_011094.1 3260738 3262534 D identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3260738..3262534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116148.1 CDS SeSA_A3379 NC_011094.1 3262554 3263225 D identified by match to protein family HMM PF01323; disulfide isomerase 3262554..3263225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116149.1 CDS SeSA_A3380 NC_011094.1 3263240 3263917 D disulfide oxidoreductase 3263240..3263917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116150.1 CDS SeSA_A3381 NC_011094.1 3264131 3264532 D ISPsy11, transposase OrfA 3264131..3264532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116151.1 CDS SeSA_A3382 NC_011094.1 3264703 3265386 D identified by match to protein family HMM PF00665; integrase, catalytic region 3264703..3265386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116152.1 CDS ribB NC_011094.1 3265403 3266056 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3265403..3266056) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116153.1 CDS SeSA_A3385 NC_011094.1 3266493 3266789 D identified by match to protein family HMM PF04380; hypothetical protein 3266493..3266789 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116154.1 CDS SeSA_A3386 NC_011094.1 3266863 3267072 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3266863..3267072) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116155.1 CDS SeSA_A3387 NC_011094.1 3267330 3267950 D identified by match to protein family HMM PF07290; hypothetical protein 3267330..3267950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116156.1 CDS SeSA_A3388 NC_011094.1 3267969 3269648 D identified by match to protein family HMM PF01145; hypothetical protein 3267969..3269648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116157.1 CDS SeSA_A3390 NC_011094.1 3270107 3271540 R 'catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose'; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3270107..3271540) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116158.1 CDS glnE NC_011094.1 3271588 3274431 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3271588..3274431) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116159.1 CDS SeSA_A3392 NC_011094.1 3274549 3275850 R identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase complement(3274549..3275850) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116160.1 CDS SeSA_A3393 NC_011094.1 3276092 3276706 D identified by match to protein family HMM PF08239; signal transduction protein 3276092..3276706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116161.1 CDS cca NC_011094.1 3276769 3278010 D 'catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases'; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3276769..3278010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116162.1 CDS bacA NC_011094.1 3278114 3278935 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(3278114..3278935) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116163.1 CDS folB NC_011094.1 3279033 3279392 R 'catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin'; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3279033..3279392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116164.1 CDS SeSA_A3397 NC_011094.1 3279499 3280116 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3279499..3280116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116165.1 CDS gcp NC_011094.1 3280339 3281352 R 'in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity'; DNA-binding/iron metalloprotein/AP endonuclease complement(3280339..3281352) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116166.1 CDS rpsU NC_011094.1 3281580 3281795 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3281580..3281795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116167.1 CDS dnaG NC_011094.1 3282031 3283776 D synthesizes RNA primers at the replication forks; DNA primase 3282031..3283776 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116168.1 CDS rpoD NC_011094.1 3283926 3285773 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3283926..3285773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116169.1 CDS SeSA_A3402 NC_011094.1 3285897 3286403 R identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase complement(3285897..3286403) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116170.1 CDS SeSA_A3404 NC_011094.1 3286684 3287451 R identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein complement(3286684..3287451) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116171.1 CDS SeSA_A3405 NC_011094.1 3287686 3288330 D identified by match to protein family HMM PF03551; transcriptional regulator, PadR family protein 3287686..3288330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116172.1 CDS SeSA_A3406 NC_011094.1 3288327 3289895 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II complement(3288327..3289895) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116173.1 CDS SeSA_A3407 NC_011094.1 3290282 3291802 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor complement(3290282..3291802) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116174.1 CDS SeSA_A3408 NC_011094.1 3291829 3291969 D hypothetical protein 3291829..3291969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116175.1 CDS ygjG NC_011094.1 3292232 3293611 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3292232..3293611 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116176.1 CDS SeSA_A3410 NC_011094.1 3293782 3295800 D identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3293782..3295800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116177.1 CDS SeSA_A3411 NC_011094.1 3295881 3297017 R identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein complement(3295881..3297017) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116178.1 CDS SeSA_A3412 NC_011094.1 3297103 3297600 D identified by match to protein family HMM PF01863; hypothetical protein 3297103..3297600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116179.2 CDS SeSA_A3413 NC_011094.1 3297752 3298444 D identified by match to protein family HMM PF02698; hypothetical protein 3297752..3298444 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116180.1 CDS SeSA_A3414 NC_011094.1 3298496 3299530 D identified by match to protein family HMM PF01408; oxidoreductase YgjR 3298496..3299530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116181.1 CDS SeSA_A3415 NC_011094.1 3299801 3300769 D identified by match to protein family HMM PF03741; inner membrane protein alx 3299801..3300769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116182.1 CDS SeSA_A3416 NC_011094.1 3301024 3302268 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3301024..3302268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116183.1 CDS SeSA_A3417 NC_011094.1 3302718 3303380 D identified by match to protein family HMM PF09335; hypothetical protein 3302718..3303380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116184.1 CDS SeSA_A3418 NC_011094.1 3303441 3303767 D hypothetical protein 3303441..3303767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116185.1 CDS SeSA_A3419 NC_011094.1 3303912 3304280 D identified by match to protein family HMM PF06476; hypothetical protein 3303912..3304280 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116186.1 CDS SeSA_A3420 NC_011094.1 3304322 3304627 D identified by match to protein family HMM PF05957; hypothetical protein 3304322..3304627 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116187.1 CDS SeSA_A3421 NC_011094.1 3304630 3305028 D hypothetical protein 3304630..3305028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116188.1 CDS SeSA_A3422 NC_011094.1 3305025 3305324 D hypothetical protein 3305025..3305324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116189.1 CDS SeSA_A3423 NC_011094.1 3305479 3305964 D identified by match to protein family HMM PF07681; hypothetical protein 3305479..3305964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116190.1 CDS SeSA_A3424 NC_011094.1 3306032 3307018 D hypothetical protein 3306032..3307018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116191.1 CDS SeSA_A3425 NC_011094.1 3307142 3307507 D identified by match to protein family HMM PF05656; hypothetical protein 3307142..3307507 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116192.1 CDS SeSA_A3426 NC_011094.1 3307546 3308442 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein complement(3307546..3308442) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116193.1 CDS SeSA_A3427 NC_011094.1 3308547 3309248 D identified by match to protein family HMM PF02678; pirin 3308547..3309248 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116194.1 CDS SeSA_A3428 NC_011094.1 3309272 3309436 D hypothetical protein 3309272..3309436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116195.1 CDS SeSA_A3429 NC_011094.1 3309549 3310859 R identified by match to protein family HMM PF06354; hypothetical protein complement(3309549..3310859) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116196.1 CDS SeSA_A3430 NC_011094.1 3310885 3312324 R identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO complement(3310885..3312324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116197.1 CDS SeSA_A3431 NC_011094.1 3312532 3313896 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(3312532..3313896) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116198.1 CDS pflB NC_011094.1 3313966 3316260 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(3313966..3316260) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116199.1 CDS ackA NC_011094.1 3316294 3317502 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3316294..3317502) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116200.1 CDS tdcC NC_011094.1 3317569 3318900 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3317569..3318900) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116201.1 CDS tdcB NC_011094.1 3318921 3319910 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3318921..3319910) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116202.1 CDS SeSA_A3436 NC_011094.1 3320008 3320946 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3320008..3320946) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116203.1 CDS SeSA_A3437 NC_011094.1 3321578 3321706 D identified by glimmer; hypothetical protein 3321578..3321706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119802.1 CDS SeSA_A3440 NC_011094.1 3322409 3323554 R glycerate kinase complement(3322409..3323554) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116204.1 CDS garR NC_011094.1 3323652 3324542 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3323652..3324542) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116205.1 CDS garL NC_011094.1 3324568 3325338 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3324568..3325338) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116206.1 CDS SeSA_A3443 NC_011094.1 3325521 3325640 D identified by glimmer; hypothetical protein 3325521..3325640 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116207.1 CDS garD NC_011094.1 3325868 3327439 D identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248; galactarate dehydratase 3325868..3327439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116208.1 CDS gatY NC_011094.1 3327697 3328551 D 'catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway'; tagatose-bisphosphate aldolase 3327697..3328551 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116209.1 CDS SeSA_A3446 NC_011094.1 3328671 3329942 D identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3328671..3329942 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116210.1 CDS SeSA_A3447 NC_011094.1 3329957 3330421 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3329957..3330421 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116211.1 CDS SeSA_A3448 NC_011094.1 3330452 3330736 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3330452..3330736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116212.1 CDS SeSA_A3449 NC_011094.1 3330740 3332113 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3330740..3332113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116213.1 CDS SeSA_A3450 NC_011094.1 3332157 3333200 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3332157..3333200 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116214.1 CDS SeSA_A3451 NC_011094.1 3333311 3334084 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3333311..3334084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116215.1 CDS SeSA_A3452 NC_011094.1 3334242 3335105 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(3334242..3335105) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116216.1 CDS SeSA_A3453 NC_011094.1 3335169 3337211 D identified by match to protein family HMM PF04348; LppC superfamily protein 3335169..3337211 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116217.1 CDS SeSA_A3454 NC_011094.1 3337169 3337564 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3337169..3337564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116218.1 CDS diaA NC_011094.1 3337586 3338176 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3337586..3338176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116219.1 CDS SeSA_A3456 NC_011094.1 3338186 3338761 D identified by match to protein family HMM PF04972; hypothetical protein 3338186..3338761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116220.1 CDS SeSA_A3457 NC_011094.1 3338828 3339463 R identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(3338828..3339463) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116221.1 CDS SeSA_A3458 NC_011094.1 3339594 3340112 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular peptidase, PfpI family protein 3339594..3340112 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116222.1 CDS SeSA_A3460 NC_011094.1 3340092 3340535 R hypothetical protein complement(3340092..3340535) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116223.1 CDS SeSA_A3459 NC_011094.1 3340528 3340890 D identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3340528..3340890 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116224.1 CDS SeSA_A3461 NC_011094.1 3340877 3341380 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(3340877..3341380) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116225.1 CDS SeSA_A3462 NC_011094.1 3341374 3341898 R identified by match to protein family HMM PF02036; sterol-binding protein complement(3341374..3341898) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116226.1 CDS SeSA_A3463 NC_011094.1 3342115 3343110 D identified by match to protein family HMM PF01136; peptidase, U32 family protein 3342115..3343110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116227.1 CDS SeSA_A3464 NC_011094.1 3343119 3343997 D identified by match to protein family HMM PF01136; peptidase, U32 family protein 3343119..3343997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116228.1 CDS SeSA_A3465 NC_011094.1 3344174 3345181 D identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558; hypothetical protein 3344174..3345181 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116229.1 CDS mtr NC_011094.1 3345272 3346516 R tryptophan transporter of high affinity; tryptophan permease complement(3345272..3346516) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116230.1 CDS deaD NC_011094.1 3346670 3348559 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3346670..3348559) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116231.1 CDS nlpI NC_011094.1 3348738 3349622 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3348738..3349622) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119803.1 CDS pnp NC_011094.1 3349732 3351897 R polyribonucleotide nucleotidyltransferase complement(3349732..3351897) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116232.1 CDS rpsO NC_011094.1 3352109 3352378 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3352109..3352378) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116233.1 CDS truB NC_011094.1 3352529 3353473 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3352529..3353473) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116234.1 CDS rbfA NC_011094.1 3353473 3353874 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3353473..3353874) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116235.1 CDS SeSA_A3475 NC_011094.1 3353904 3354023 R identified by glimmer; hypothetical protein complement(3353904..3354023) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116236.1 CDS infB NC_011094.1 3354026 3356704 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3354026..3356704) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116237.1 CDS nusA NC_011094.1 3356729 3358231 R 'modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination'; transcription elongation factor NusA complement(3356729..3358231) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116238.1 CDS SeSA_A3478 NC_011094.1 3358259 3358711 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3358259..3358711) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116239.1 CDS argG NC_011094.1 3359339 3360682 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3359339..3360682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116240.1 CDS secG NC_011094.1 3360984 3361316 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(3360984..3361316) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116241.1 CDS glmM NC_011094.1 3361539 3362876 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3361539..3362876) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116242.1 CDS folP NC_011094.1 3362869 3363717 R 'catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate'; dihydropteroate synthase complement(3362869..3363717) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116243.1 CDS SeSA_A3484 NC_011094.1 3363670 3363798 D identified by glimmer; hypothetical protein 3363670..3363798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116244.1 CDS hflB NC_011094.1 3363822 3365765 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3363822..3365765) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116245.1 CDS rrmJ NC_011094.1 3365860 3366486 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase complement(3365860..3366486) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116246.1 CDS SeSA_A3488 NC_011094.1 3366574 3366906 D RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3366574..3366906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116247.1 CDS greA NC_011094.1 3367062 3367538 R 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreA complement(3367062..3367538) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116248.1 CDS SeSA_A3490 NC_011094.1 3367592 3367720 R identified by glimmer; hypothetical protein complement(3367592..3367720) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116249.1 CDS dacB NC_011094.1 3367786 3369219 D 'penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 3367786..3369219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116250.1 CDS SeSA_A3492 NC_011094.1 3369228 3369353 D identified by glimmer; hypothetical protein 3369228..3369353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116251.1 CDS obgE NC_011094.1 3369350 3370522 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3369350..3370522) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116252.1 CDS SeSA_A3494 NC_011094.1 3370538 3371503 R identified by match to protein family HMM PF00892; transporter complement(3370538..3371503) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116253.1 CDS rpmA NC_011094.1 3371633 3371890 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3371633..3371890) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116254.1 CDS rplU NC_011094.1 3371910 3372221 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(3371910..3372221) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116255.2 CDS ispB NC_011094.1 3372479 3373450 D identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3372479..3373450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116256.1 CDS SeSA_A3498 NC_011094.1 3373682 3373969 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3373682..3373969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116257.1 CDS murA NC_011094.1 3374027 3375286 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3374027..3375286) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116258.1 CDS SeSA_A3500 NC_011094.1 3375340 3375594 R identified by match to protein family HMM PF01722; hypothetical protein complement(3375340..3375594) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116259.1 CDS SeSA_A3501 NC_011094.1 3375782 3376078 R anti-sigma factor antagonist complement(3375782..3376078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116260.1 CDS ttg2D NC_011094.1 3376078 3376713 R identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D complement(3376078..3376713) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116261.1 CDS SeSA_A3503 NC_011094.1 3376732 3377283 R identified by match to protein family HMM PF02470; Mce family protein complement(3376732..3377283) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116262.1 CDS SeSA_A3504 NC_011094.1 3377288 3378070 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease complement(3377288..3378070) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116263.1 CDS SeSA_A3505 NC_011094.1 3378078 3378890 R ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein complement(3378078..3378890) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116264.1 CDS SeSA_A3506 NC_011094.1 3379103 3380080 D YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3379103..3380080 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116265.1 CDS kdsD NC_011094.1 3380094 3381080 D identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3380094..3381080 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116266.1 CDS kdsC NC_011094.1 3381101 3381667 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3381101..3381667 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116267.1 CDS SeSA_A3509 NC_011094.1 3381664 3382239 D identified by match to protein family HMM PF06835; hypothetical protein 3381664..3382239 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116268.1 CDS lptA NC_011094.1 3382208 3382762 D 'LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system'; lipopolysaccharide transport periplasmic protein LptA 3382208..3382762 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116269.1 CDS lptB NC_011094.1 3382769 3383494 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3382769..3383494 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116270.1 CDS rpoN NC_011094.1 3383542 3384975 D 'sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen'; RNA polymerase factor sigma-54 3383542..3384975 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116271.1 CDS yfiA NC_011094.1 3384998 3385285 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3384998..3385285 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116272.1 CDS ptsN NC_011094.1 3385403 3385894 D identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3385403..3385894 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116273.1 CDS SeSA_A3515 NC_011094.1 3385940 3386794 D identified by match to protein family HMM PF03668; hypothetical protein 3385940..3386794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116274.1 CDS ptsO NC_011094.1 3386791 3387063 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 3386791..3387063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116275.1 CDS SeSA_A3517 NC_011094.1 3387313 3387945 D hypothetical protein 3387313..3387945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116276.1 CDS mtgA NC_011094.1 3388020 3388748 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3388020..3388748) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116277.1 CDS elbB NC_011094.1 3388745 3389398 R identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein complement(3388745..3389398) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116278.1 CDS SeSA_A3521 NC_011094.1 3389625 3391961 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3389625..3391961) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116279.1 CDS SeSA_A3522 NC_011094.1 3392055 3392984 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein complement(3392055..3392984) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119804.1 CDS gltB NC_011094.1 3393656 3398116 D glutamate synthase subunit alpha 3393656..3398116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116280.1 CDS gltD NC_011094.1 3398126 3399544 D 'glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate'; glutamate synthase subunit beta 3398126..3399544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116281.1 CDS SeSA_A3525 NC_011094.1 3399752 3400855 D identified by match to protein family HMM PF06250; hypothetical protein 3399752..3400855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116282.1 CDS codB NC_011094.1 3400875 3402224 D identified by match to protein family HMM PF02133; cytosine permease 3400875..3402224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116283.1 CDS SeSA_A3527 NC_011094.1 3402211 3403491 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3402211..3403491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116284.1 CDS SeSA_A3528 NC_011094.1 3403573 3404040 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(3403573..3404040) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116285.1 CDS SeSA_A3529 NC_011094.1 3404037 3404912 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3404037..3404912) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116286.1 CDS SeSA_A3530 NC_011094.1 3404909 3405598 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3404909..3405598) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116287.1 CDS SeSA_A3531 NC_011094.1 3405645 3407135 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter complement(3405645..3407135) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116288.1 CDS nanA NC_011094.1 3407251 3408144 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3407251..3408144) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116289.2 CDS SeSA_A3533 NC_011094.1 3408279 3409070 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3408279..3409070) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116290.1 CDS sspB NC_011094.1 3409179 3409679 R identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor complement(3409179..3409679) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116291.1 CDS sspA NC_011094.1 3409685 3410323 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3409685..3410323) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116292.1 CDS rpsI NC_011094.1 3410637 3411029 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3410637..3411029) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116293.1 CDS rplM NC_011094.1 3411045 3411473 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3411045..3411473) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116294.1 CDS SeSA_A3538 NC_011094.1 3411775 3412899 R identified by match to protein family HMM PF03969; ATPase, AFG1 family protein complement(3411775..3412899) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116295.1 CDS SeSA_A3539 NC_011094.1 3413092 3413490 D identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3413092..3413490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116296.1 CDS SeSA_A3540 NC_011094.1 3413647 3415002 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3413647..3415002 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116297.1 CDS degS NC_011094.1 3415095 3416165 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3415095..3416165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116298.2 CDS SeSA_A3542 NC_011094.1 3416199 3416930 R hypothetical protein complement(3416199..3416930) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116299.1 CDS SeSA_A3543 NC_011094.1 3416950 3418251 R identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta complement(3416950..3418251) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116300.1 CDS oadA NC_011094.1 3418264 3420033 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3418264..3420033) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116301.1 CDS SeSA_A3545 NC_011094.1 3420049 3420291 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3420049..3420291) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116302.1 CDS SeSA_A3546 NC_011094.1 3420448 3421065 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3420448..3421065) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116303.1 CDS SeSA_A3547 NC_011094.1 3421065 3421964 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3421065..3421964) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116304.1 CDS SeSA_A3548 NC_011094.1 3421997 3423265 R identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter complement(3421997..3423265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116305.1 CDS SeSA_A3549 NC_011094.1 3423476 3424141 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator complement(3423476..3424141) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116306.1 CDS SeSA_A3550 NC_011094.1 3424128 3424757 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(3424128..3424757) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116307.1 CDS mdh NC_011094.1 3424877 3425815 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3424877..3425815) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116308.1 CDS argR NC_011094.1 3426230 3426700 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3426230..3426700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116309.1 CDS SeSA_A3553 NC_011094.1 3427065 3427328 D identified by match to protein family HMM PF07338; hypothetical protein 3427065..3427328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116310.1 CDS SeSA_A3554 NC_011094.1 3427432 3427698 D identified by match to protein family HMM PF07338; hypothetical protein 3427432..3427698 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116311.1 CDS SeSA_A3555 NC_011094.1 3427758 3428030 R barstar complement(3427758..3428030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116312.1 CDS aaeB NC_011094.1 3428202 3430169 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3428202..3430169) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116313.1 CDS aaeA NC_011094.1 3430175 3431107 R 'with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate'; p-hydroxybenzoic acid efflux subunit AaeA complement(3430175..3431107) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116314.1 CDS aaeX NC_011094.1 3431115 3431318 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3431115..3431318) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116315.1 CDS aaeR NC_011094.1 3431500 3432429 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3431500..3432429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116316.1 CDS tldD NC_011094.1 3432551 3433996 R 'responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA'; protease TldD complement(3432551..3433996) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116317.1 CDS SeSA_A3561 NC_011094.1 3434141 3437941 R identified by match to protein family HMM TIGR02099; hypothetical protein complement(3434141..3437941) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116318.1 CDS cafA NC_011094.1 3438052 3439521 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3438052..3439521) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116319.1 CDS maf NC_011094.1 3439511 3440104 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3439511..3440104) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116320.1 CDS lytS NC_011094.1 3440113 3440604 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3440113..3440604) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116321.1 CDS mreC NC_011094.1 3440604 3441656 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3440604..3441656) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116322.1 CDS mreB NC_011094.1 3441721 3442764 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3441721..3442764) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116323.1 CDS SeSA_A3567 NC_011094.1 3443072 3445012 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3443072..3445012) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116324.1 CDS SeSA_A3568 NC_011094.1 3445216 3446190 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3445216..3446190 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116325.1 CDS SeSA_A3569 NC_011094.1 3446303 3447307 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3446303..3447307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116326.1 CDS SeSA_A3570 NC_011094.1 3447308 3447907 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3447308..3447907 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116327.1 CDS accB NC_011094.1 3448300 3448770 D 'composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3448300..3448770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116328.1 CDS accC NC_011094.1 3448781 3450130 D 'an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxylase subunit 3448781..3450130 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116329.1 CDS SeSA_A3573 NC_011094.1 3450239 3450481 D identified by match to protein family HMM PF06196; hypothetical protein 3450239..3450481 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116330.1 CDS panF NC_011094.1 3450471 3451922 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3450471..3451922 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116331.1 CDS prmA NC_011094.1 3451934 3452815 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3451934..3452815 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116332.1 CDS dusB NC_011094.1 3453477 3454442 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3453477..3454442 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116333.1 CDS fis NC_011094.1 3454468 3454764 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3454468..3454764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116334.1 CDS SeSA_A3578 NC_011094.1 3454850 3455734 D identified by match to protein family HMM PF01555; methyltransferase 3454850..3455734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116335.1 CDS SeSA_A3579 NC_011094.1 3455817 3455981 D hypothetical protein 3455817..3455981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116336.1 CDS SeSA_A3580 NC_011094.1 3456132 3458231 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; ggdef domain/eal domain-containing protein 3456132..3458231 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116337.1 CDS SeSA_A3581 NC_011094.1 3458234 3458896 R identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR complement(3458234..3458896) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116338.1 CDS SeSA_A3582 NC_011094.1 3458899 3459060 R identified by glimmer; hypothetical protein complement(3458899..3459060) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116339.1 CDS SeSA_A3583 NC_011094.1 3459309 3460466 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein E 3459309..3460466 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116340.1 CDS SeSA_A3584 NC_011094.1 3460478 3463591 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3460478..3463591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116341.1 CDS SeSA_A3586 NC_011094.1 3463689 3463853 R hypothetical protein complement(3463689..3463853) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116342.1 CDS SeSA_A3585 NC_011094.1 3463829 3464050 D lipoprotein 3463829..3464050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116343.1 CDS SeSA_A3587 NC_011094.1 3464490 3464624 R identified by glimmer; hypothetical protein complement(3464490..3464624) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_007443075.1 CDS SeSA_A3596 NC_011094.1 3470396 3470950 D hypothetical protein 3470396..3470950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116344.1 CDS SeSA_A3597 NC_011094.1 3470926 3471183 R identified by match to protein family HMM PF07369; hypothetical protein complement(3470926..3471183) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116345.1 CDS aroE NC_011094.1 3471180 3471998 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3471180..3471998) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116346.1 CDS SeSA_A3599 NC_011094.1 3472003 3472575 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor complement(3472003..3472575) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116347.1 CDS SeSA_A3600 NC_011094.1 3472580 3473122 R identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein complement(3472580..3473122) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116348.1 CDS smg NC_011094.1 3473149 3473622 R identified by match to protein family HMM PF04361; hypothetical protein complement(3473149..3473622) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116349.1 CDS SeSA_A3602 NC_011094.1 3473594 3474718 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(3473594..3474718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116350.1 CDS def NC_011094.1 3474850 3475359 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3474850..3475359 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116351.1 CDS fmt NC_011094.1 3475375 3476322 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3475375..3476322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116352.1 CDS sun NC_011094.1 3476374 3477663 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3476374..3477663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116353.1 CDS trkA NC_011094.1 3477685 3479061 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3477685..3479061 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116354.1 CDS mscL NC_011094.1 3479203 3479616 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein 3479203..3479616 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116355.1 CDS zntR NC_011094.1 3479879 3480304 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3479879..3480304) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116356.1 CDS SeSA_A3609 NC_011094.1 3480315 3480683 R identified by match to protein family HMM PF09350; hypothetical protein complement(3480315..3480683) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116357.1 CDS rplQ NC_011094.1 3480791 3481174 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3480791..3481174) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116358.1 CDS rpoA NC_011094.1 3481215 3482204 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3481215..3482204) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116359.1 CDS rpsD NC_011094.1 3482230 3482850 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3482230..3482850) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116360.1 CDS rpsK NC_011094.1 3482884 3483273 R 'located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3'; 30S ribosomal protein S11 complement(3482884..3483273) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116361.1 CDS rpsM NC_011094.1 3483290 3483646 R 'located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA'; 30S ribosomal protein S13 complement(3483290..3483646) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116362.1 CDS secY NC_011094.1 3483941 3485272 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3483941..3485272) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116363.1 CDS rplO NC_011094.1 3485280 3485714 R late assembly protein; 50S ribosomal protein L15 complement(3485280..3485714) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116364.1 CDS rpmD NC_011094.1 3485718 3485897 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3485718..3485897) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116365.1 CDS rpsE NC_011094.1 3485901 3486404 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3485901..3486404) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116366.1 CDS rplR NC_011094.1 3486419 3486772 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3486419..3486772) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116367.1 CDS rplF NC_011094.1 3486782 3487315 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3486782..3487315) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116368.1 CDS rpsH NC_011094.1 3487328 3487720 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3487328..3487720) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116369.1 CDS rpsN NC_011094.1 3487754 3488059 R 'located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif'; 30S ribosomal protein S14 complement(3487754..3488059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116370.1 CDS rplE NC_011094.1 3488074 3488613 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3488074..3488613) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116371.1 CDS rplX NC_011094.1 3488628 3488942 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3488628..3488942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116372.1 CDS rplN NC_011094.1 3488953 3489324 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3488953..3489324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116373.1 CDS rpsQ NC_011094.1 3489488 3489742 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3489488..3489742) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116374.1 CDS rpmC NC_011094.1 3489742 3489933 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3489742..3489933) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116375.1 CDS rplP NC_011094.1 3489933 3490343 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3489933..3490343) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116376.1 CDS rpsC NC_011094.1 3490356 3491057 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3490356..3491057) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116377.1 CDS rplV NC_011094.1 3491075 3491407 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3491075..3491407) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116378.1 CDS rpsS NC_011094.1 3491422 3491700 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3491422..3491700) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116379.1 CDS rplB NC_011094.1 3491717 3492538 R 'one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation'; 50S ribosomal protein L2 complement(3491717..3492538) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116380.1 CDS rplW NC_011094.1 3492555 3492857 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3492555..3492857) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116381.1 CDS rplD NC_011094.1 3492854 3493459 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3492854..3493459) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116382.1 CDS rplC NC_011094.1 3493470 3494099 R 'binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin'; 50S ribosomal protein L3 complement(3493470..3494099) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116383.1 CDS rpsJ NC_011094.1 3494132 3494443 R identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 complement(3494132..3494443) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116384.1 CDS SeSA_A3638 NC_011094.1 3494823 3495290 D identified by match to protein family HMM PF01478; leader peptidase HopD 3494823..3495290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116385.1 CDS bfr NC_011094.1 3495287 3495763 R iron storage protein; bacterioferritin complement(3495287..3495763) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116386.1 CDS bfd NC_011094.1 3495836 3496030 R identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin complement(3495836..3496030) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116387.1 CDS tuf2 NC_011094.1 3496215 3497399 R 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu complement(3496215..3497399) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116388.1 CDS fusA NC_011094.1 3497471 3499585 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3497471..3499585) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116389.1 CDS rpsG NC_011094.1 3499682 3500152 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3499682..3500152) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116390.1 CDS rpsL NC_011094.1 3500248 3500622 R 'interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance'; 30S ribosomal protein S12 complement(3500248..3500622) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116391.1 CDS dsrH NC_011094.1 3500748 3501035 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(3500748..3501035) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116392.1 CDS tusC NC_011094.1 3501043 3501399 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(3501043..3501399) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116393.1 CDS tusD NC_011094.1 3501399 3501785 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(3501399..3501785) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116394.1 CDS SeSA_A3648 NC_011094.1 3501785 3502507 R identified by match to protein family HMM PF08348; hypothetical protein complement(3501785..3502507) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116395.1 CDS SeSA_A3649 NC_011094.1 3502783 3503601 R rotamase; FKBP-type peptidylprolyl isomerase complement(3502783..3503601) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116396.1 CDS SeSA_A3650 NC_011094.1 3503821 3504039 D identified by match to protein family HMM PF04102; hypothetical protein 3503821..3504039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116397.1 CDS slyD NC_011094.1 3504229 3504819 R rotamase; FKBP-type peptidylprolyl isomerase complement(3504229..3504819) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116398.1 CDS SeSA_A3652 NC_011094.1 3504914 3505114 R identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443; hypothetical protein complement(3504914..3505114) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116399.1 CDS kefB NC_011094.1 3505124 3506929 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3505124..3506929) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116400.1 CDS kefG NC_011094.1 3506929 3507480 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3506929..3507480) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116401.1 CDS SeSA_A3655 NC_011094.1 3507746 3509653 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3507746..3509653 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116402.1 CDS SeSA_A3656 NC_011094.1 3509669 3509890 D ABC transporter ATPase 3509669..3509890 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116403.1 CDS SeSA_A3657 NC_011094.1 3509892 3510203 R identified by match to protein family HMM PF08803; hypothetical protein complement(3509892..3510203) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116404.2 CDS SeSA_A3658 NC_011094.1 3510401 3511468 D identified by match to protein family HMM PF00561; hydrolase 3510401..3511468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116405.1 CDS SeSA_A3659 NC_011094.1 3511465 3511683 D identified by match to protein family HMM PF06794; hypothetical protein 3511465..3511683 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116406.1 CDS SeSA_A3660 NC_011094.1 3511735 3512604 D identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3511735..3512604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116407.1 CDS SeSA_A3662 NC_011094.1 3512700 3513104 R identified by match to protein family HMM PF02566; hypothetical protein complement(3512700..3513104) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116408.1 CDS SeSA_A3661 NC_011094.1 3513070 3513252 D identified by glimmer; hypothetical protein 3513070..3513252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116409.1 CDS crp NC_011094.1 3513412 3514044 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3513412..3514044 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116410.1 CDS SeSA_A3664 NC_011094.1 3514093 3516180 D identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; integral membrane protein, YccS/YhfK family protein 3514093..3516180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116411.1 CDS argD NC_011094.1 3516223 3517440 R 'DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate'; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase complement(3516223..3517440) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116412.1 CDS pabA NC_011094.1 3517526 3518089 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3517526..3518089) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116413.1 CDS fic NC_011094.1 3518121 3518723 R identified by match to protein family HMM PF02661; cell filamentation protein Fic complement(3518121..3518723) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116414.1 CDS SeSA_A3668 NC_011094.1 3518713 3518880 R hypothetical protein complement(3518713..3518880) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116415.1 CDS ppiA NC_011094.1 3518994 3519566 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A complement(3518994..3519566) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116416.1 CDS SeSA_A3670 NC_011094.1 3519843 3521024 D identified by match to protein family HMM PF07690; hypothetical protein 3519843..3521024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116417.1 CDS SeSA_A3672 NC_011094.1 3521215 3521391 R hypothetical protein complement(3521215..3521391) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116418.1 CDS nirB NC_011094.1 3521344 3523887 D identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 3521344..3523887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116419.1 CDS nirD NC_011094.1 3523884 3524210 D 'involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations'; nitrite reductase small subunit 3523884..3524210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116420.1 CDS nirC NC_011094.1 3524392 3525201 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3524392..3525201 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116421.1 CDS cysG NC_011094.1 3525213 3526586 D 'multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin'; siroheme synthase 3525213..3526586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116422.1 CDS SeSA_A3676 NC_011094.1 3526923 3532745 D identified by match to protein family HMM PF03797; BigA 3526923..3532745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116423.1 CDS SeSA_A3677 NC_011094.1 3532939 3533109 D outer membrane lipoprotein 3532939..3533109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116424.1 CDS trpS NC_011094.1 3533254 3534258 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase complement(3533254..3534258) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116425.1 CDS gph NC_011094.1 3534251 3535009 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3534251..3535009) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116426.1 CDS rpe NC_011094.1 3535002 3535679 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3535002..3535679) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116427.1 CDS dam NC_011094.1 3535697 3536533 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase complement(3535697..3536533) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116428.1 CDS SeSA_A3682 NC_011094.1 3536713 3537990 R identified by match to protein family HMM PF05036; hypothetical protein complement(3536713..3537990) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116429.1 CDS aroB NC_011094.1 3538088 3539176 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3538088..3539176) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116430.1 CDS aroK NC_011094.1 3539233 3539754 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3539233..3539754) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116431.1 CDS SeSA_A3686 NC_011094.1 3541373 3541720 R hypothetical protein complement(3541373..3541720) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116432.1 CDS SeSA_A3687 NC_011094.1 3541764 3542237 R hypothetical protein complement(3541764..3542237) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116433.1 CDS SeSA_A3688 NC_011094.1 3542221 3542760 R identified by match to protein family HMM PF05137; PilN family protein complement(3542221..3542760) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119805.1 CDS SeSA_A3689 NC_011094.1 3542760 3543539 R hypothetical protein complement(3542760..3543539) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116434.1 CDS mrcA NC_011094.1 3543660 3546212 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3543660..3546212 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116435.1 CDS nudE NC_011094.1 3546308 3546904 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3546308..3546904) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116436.1 CDS SeSA_A3692 NC_011094.1 3547194 3549326 D identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3547194..3549326 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116437.1 CDS SeSA_A3693 NC_011094.1 3549391 3550059 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family protein 3549391..3550059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116438.1 CDS hslR NC_011094.1 3550070 3550471 D identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3550070..3550471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116439.1 CDS hslO NC_011094.1 3550490 3551374 D 'becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers'; Hsp33-like chaperonin 3550490..3551374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116440.1 CDS SeSA_A3696 NC_011094.1 3551485 3553194 R hypothetical protein complement(3551485..3553194) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116441.1 CDS SeSA_A3697 NC_011094.1 3553386 3553520 R identified by glimmer; hypothetical protein complement(3553386..3553520) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116442.1 CDS pckA NC_011094.1 3553574 3555193 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3553574..3555193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116443.1 CDS envZ NC_011094.1 3555268 3556611 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3555268..3556611) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116444.1 CDS ompR NC_011094.1 3556617 3557336 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3556617..3557336) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116445.1 CDS greB NC_011094.1 3557562 3558035 D 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreB 3557562..3558035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116446.1 CDS SeSA_A3702 NC_011094.1 3558134 3560464 D identified by match to protein family HMM PF00575; match to protein family HMM PF09371; transcriptional accessory protein 3558134..3560464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116447.1 CDS feoA NC_011094.1 3560901 3561128 D identified by match to protein family HMM PF04023; ferrous iron transport protein A 3560901..3561128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116448.1 CDS feoB NC_011094.1 3561147 3563465 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3561147..3563465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116449.1 CDS SeSA_A3705 NC_011094.1 3563478 3563714 D identified by match to protein family HMM PF09012; hypothetical protein 3563478..3563714 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116450.1 CDS SeSA_A3706 NC_011094.1 3563766 3563879 D identified by glimmer; hypothetical protein 3563766..3563879 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116451.1 CDS SeSA_A3707 NC_011094.1 3563949 3564863 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3563949..3564863 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116452.1 CDS SeSA_A3708 NC_011094.1 3564899 3565621 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3564899..3565621) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116453.1 CDS gntX NC_011094.1 3565707 3566390 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3565707..3566390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116454.1 CDS gntY NC_011094.1 3566449 3567024 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3566449..3567024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116455.1 CDS gntT NC_011094.1 3567401 3568717 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3567401..3568717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116456.1 CDS malQ NC_011094.1 3568836 3570914 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3568836..3570914) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116457.1 CDS SeSA_A3713 NC_011094.1 3570924 3573317 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase complement(3570924..3573317) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116458.1 CDS malT NC_011094.1 3573911 3576616 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3573911..3576616 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116459.1 CDS SeSA_A3715 NC_011094.1 3576683 3577441 R 'represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism'; DNA-binding transcriptional repressor GlpR complement(3576683..3577441) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116460.1 CDS SeSA_A3716 NC_011094.1 3577535 3578365 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3577535..3578365) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116461.1 CDS glpE NC_011094.1 3578441 3578767 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3578441..3578767) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116462.1 CDS glpD NC_011094.1 3578966 3580474 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3578966..3580474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116463.1 CDS SeSA_A3719 NC_011094.1 3580521 3580919 R hypothetical protein complement(3580521..3580919) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116464.1 CDS SeSA_A3720 NC_011094.1 3580934 3581641 R hypothetical protein complement(3580934..3581641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116465.1 CDS SeSA_A3721 NC_011094.1 3581651 3582025 R phosphate-binding protein complement(3581651..3582025) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116466.1 CDS SeSA_A3722 NC_011094.1 3582077 3582196 D identified by glimmer; hypothetical protein 3582077..3582196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116467.1 CDS SeSA_A3723 NC_011094.1 3582190 3582732 R identified by glimmer; hypothetical protein complement(3582190..3582732) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116468.1 CDS glgP NC_011094.1 3582832 3585279 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(3582832..3585279) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116469.1 CDS glgA NC_011094.1 3585299 3586732 R 'catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose'; glycogen synthase complement(3585299..3586732) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116470.1 CDS glgC NC_011094.1 3586732 3588027 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3586732..3588027) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116471.1 CDS glgX NC_011094.1 3588042 3590018 R 'catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen'; glycogen debranching protein complement(3588042..3590018) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116472.1 CDS glgB NC_011094.1 3590015 3592201 R 'catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain'; glycogen branching protein complement(3590015..3592201) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116473.2 CDS asd NC_011094.1 3592579 3593685 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3592579..3593685) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116474.1 CDS gntU NC_011094.1 3594109 3595449 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter complement(3594109..3595449) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116475.1 CDS gntK NC_011094.1 3595446 3595940 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3595446..3595940) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116476.1 CDS gntR NC_011094.1 3596118 3597113 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator GntR complement(3596118..3597113) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116477.1 CDS SeSA_A3733 NC_011094.1 3597243 3597938 R identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein complement(3597243..3597938) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116478.1 CDS SeSA_A3734 NC_011094.1 3598062 3599099 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase complement(3598062..3599099) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116479.1 CDS SeSA_A3736 NC_011094.1 3599566 3600054 D YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3599566..3600054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116480.1 CDS SeSA_A3737 NC_011094.1 3600135 3600251 R identified by glimmer; hypothetical protein complement(3600135..3600251) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116481.1 CDS SeSA_A3738 NC_011094.1 3600319 3601533 D identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3600319..3601533 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116482.1 CDS SeSA_A3739 NC_011094.1 3601549 3602310 D identified by match to protein family HMM PF07090; hypothetical protein 3601549..3602310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116483.1 CDS SeSA_A3740 NC_011094.1 3602364 3603335 D hypothetical protein 3602364..3603335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116484.1 CDS SeSA_A3741 NC_011094.1 3603332 3604366 D identified by match to protein family HMM PF02126; phophotriesterase 3603332..3604366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116485.1 CDS ggt NC_011094.1 3604411 3606153 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase complement(3604411..3606153) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116486.1 CDS SeSA_A3743 NC_011094.1 3606279 3606695 D hypothetical protein 3606279..3606695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116487.1 CDS ugpQ NC_011094.1 3606708 3607448 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3606708..3607448) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116488.1 CDS ugpC NC_011094.1 3607445 3608515 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3607445..3608515) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116489.1 CDS SeSA_A3746 NC_011094.1 3608784 3609629 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3608784..3609629) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116490.1 CDS ugpA NC_011094.1 3609626 3610513 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3609626..3610513) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116491.1 CDS SeSA_A3748 NC_011094.1 3610618 3611934 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3610618..3611934) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116492.1 CDS SeSA_A3749 NC_011094.1 3612077 3612205 D identified by glimmer; hypothetical protein 3612077..3612205 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116493.1 CDS SeSA_A3750 NC_011094.1 3612167 3612421 R hypothetical protein complement(3612167..3612421) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116494.1 CDS livF NC_011094.1 3612609 3613322 R 'with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3612609..3613322) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116495.1 CDS livG NC_011094.1 3613324 3614091 R 'Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit complement(3613324..3614091) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116496.1 CDS livM NC_011094.1 3614088 3615365 R 'Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter permease subunit complement(3614088..3615365) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116497.1 CDS livH NC_011094.1 3615362 3616288 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease LivH complement(3615362..3616288) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116498.1 CDS livK NC_011094.1 3616348 3617457 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK complement(3616348..3617457) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116499.1 CDS SeSA_A3756 NC_011094.1 3617575 3617691 R identified by glimmer; hypothetical protein complement(3617575..3617691) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116500.1 CDS SeSA_A3757 NC_011094.1 3617879 3618262 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 3617879..3618262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116501.1 CDS SeSA_A3758 NC_011094.1 3618240 3618374 D hypothetical protein 3618240..3618374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116502.1 CDS livJ NC_011094.1 3618458 3619561 R identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivJ complement(3618458..3619561) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116503.1 CDS rpoH NC_011094.1 3619883 3620737 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3619883..3620737) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116504.1 CDS ftsX NC_011094.1 3620983 3622038 R 'ABC transporter, membrane protein'; cell division protein FtsX complement(3620983..3622038) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116505.1 CDS ftsE NC_011094.1 3622031 3622699 R 'ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions'; cell division protein FtsE complement(3622031..3622699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116506.1 CDS ftsY NC_011094.1 3622702 3624177 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3622702..3624177) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116507.1 CDS rsmD NC_011094.1 3624276 3624899 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3624276..3624899 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116508.1 CDS SeSA_A3765 NC_011094.1 3624889 3625158 D identified by match to protein family HMM PF06611; hypothetical protein 3624889..3625158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116509.1 CDS SeSA_A3766 NC_011094.1 3625180 3625551 R hypothetical protein complement(3625180..3625551) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116510.1 CDS SeSA_A3767 NC_011094.1 3625693 3626319 D identified by match to protein family HMM PF07947; hypothetical protein 3625693..3626319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116511.1 CDS zntA NC_011094.1 3626400 3628598 D 'P-type ATPase involved in the export of lead, cadmium, zinc and mercury'; zinc/cadmium/mercury/lead-transporting ATPase 3626400..3628598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116512.1 CDS SeSA_A3769 NC_011094.1 3628798 3630441 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3628798..3630441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116513.1 CDS SeSA_A3770 NC_011094.1 3630465 3630800 R identified by match to protein family HMM PF01206; hypothetical protein complement(3630465..3630800) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116514.1 CDS SeSA_A3771 NC_011094.1 3630805 3631545 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3630805..3631545 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116515.1 CDS SeSA_A3772 NC_011094.1 3631618 3632175 D hypothetical protein 3631618..3632175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116516.1 CDS SeSA_A3773 NC_011094.1 3632179 3633396 R identified by match to protein family HMM PF07690; major facilitator superfamily transporter complement(3632179..3633396) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116517.1 CDS SeSA_A3774 NC_011094.1 3633528 3634577 D identified by match to protein family HMM PF01594; hypothetical protein 3633528..3634577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116518.1 CDS SeSA_A3775 NC_011094.1 3634629 3635207 D identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3634629..3635207 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116519.1 CDS nikR NC_011094.1 3635299 3635700 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3635299..3635700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116520.1 CDS SeSA_A3777 NC_011094.1 3635802 3636926 R identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein complement(3635802..3636926) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116521.1 CDS SeSA_A3778 NC_011094.1 3636926 3639667 R identified by match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter permease/ATP-binding protein complement(3636926..3639667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116522.1 CDS SeSA_A3779 NC_011094.1 3639664 3640731 R identified by match to protein family HMM PF00529; auxiliary transport protein, membrane fusion protein (MFP) family protein complement(3639664..3640731) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116523.1 CDS SeSA_A3780 NC_011094.1 3640823 3640954 D identified by glimmer; hypothetical protein 3640823..3640954 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116524.1 CDS SeSA_A3781 NC_011094.1 3641037 3642233 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein complement(3641037..3642233) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116525.1 CDS SeSA_A3782 NC_011094.1 3642464 3643960 D identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3642464..3643960 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116526.1 CDS SeSA_A3783 NC_011094.1 3644102 3644383 R 'ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspB complement(3644102..3644383) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116527.1 CDS uspA NC_011094.1 3644825 3645259 D identified by match to protein family HMM PF00582; universal stress protein A 3644825..3645259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116528.1 CDS SeSA_A3785 NC_011094.1 3645584 3647056 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3645584..3647056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116529.1 CDS SeSA_A3786 NC_011094.1 3647148 3647906 R predicted SAM-dependent methyltransferase; methyltransferase complement(3647148..3647906) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116530.1 CDS SeSA_A3787 NC_011094.1 3647913 3649955 R identified by match to protein family HMM PF01432; oligopeptidase A complement(3647913..3649955) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116531.1 CDS SeSA_A3788 NC_011094.1 3650137 3651408 R identified by match to protein family HMM PF01569; phosphatase complement(3650137..3651408) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116532.1 CDS yhiR NC_011094.1 3651619 3652461 D identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3651619..3652461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116533.1 CDS SeSA_A3790 NC_011094.1 3652422 3652553 R identified by glimmer; hypothetical protein complement(3652422..3652553) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116534.1 CDS gor NC_011094.1 3652566 3653918 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3652566..3653918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116535.1 CDS SeSA_A3792 NC_011094.1 3653965 3655008 R identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase complement(3653965..3655008) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116536.1 CDS SeSA_A3793 NC_011094.1 3655067 3656386 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3655067..3656386) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116537.1 CDS SeSA_A3794 NC_011094.1 3656440 3657285 R identified by match to protein family HMM PF00294; PfkB domain-containing protein complement(3656440..3657285) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116538.1 CDS SeSA_A3795 NC_011094.1 3657349 3658323 R identified by match to protein family HMM PF01380; sugar isomerase complement(3657349..3658323) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116539.1 CDS SeSA_A3796 NC_011094.1 3658502 3659221 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3658502..3659221) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116540.1 CDS treF NC_011094.1 3659547 3661196 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3659547..3661196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116541.1 CDS SeSA_A3798 NC_011094.1 3661209 3662798 R hypothetical protein complement(3661209..3662798) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116542.1 CDS SeSA_A3799 NC_011094.1 3663079 3663435 D phage endolysin 3663079..3663435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116543.1 CDS SeSA_A3800 NC_011094.1 3663441 3664043 R identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator complement(3663441..3664043) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116544.1 CDS SeSA_A3801 NC_011094.1 3664671 3665573 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3664671..3665573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116545.1 CDS SeSA_A3802 NC_011094.1 3665646 3666674 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3665646..3666674 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116546.1 CDS SeSA_A3803 NC_011094.1 3667025 3668347 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter metabolite:H+ symporter (MHS) family protein 3667025..3668347 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116547.1 CDS SeSA_A3804 NC_011094.1 3668387 3670447 R identified by match to protein family HMM PF05170; AsmA family protein complement(3668387..3670447) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116548.1 CDS SeSA_A3805 NC_011094.1 3670557 3671324 R in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein complement(3670557..3671324) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119806.1 CDS SeSA_A3807 NC_011094.1 3671553 3672482 D 2-dehydro-3-deoxygluconokinase 3671553..3672482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116550.1 CDS SeSA_A3808 NC_011094.1 3672536 3674023 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein complement(3672536..3674023) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116551.1 CDS dctA NC_011094.1 3674243 3675529 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3674243..3675529) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116552.1 CDS SeSA_A3810 NC_011094.1 3675687 3677693 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase complement(3675687..3677693) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116553.1 CDS SeSA_A3811 NC_011094.1 3677867 3681385 R 'cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA'; cellulose synthase subunit BcsC complement(3677867..3681385) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116554.1 CDS bcsZ NC_011094.1 3681391 3682500 R 'catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans'; endo-1,4-D-glucanase complement(3681391..3682500) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116555.1 CDS SeSA_A3813 NC_011094.1 3682504 3684804 R 'binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)'; cellulose synthase regulator protein complement(3682504..3684804) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116556.1 CDS bcsA NC_011094.1 3684815 3687439 R 'polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis'; cellulose synthase catalytic subunit complement(3684815..3687439) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116557.1 CDS yhjQ NC_011094.1 3687436 3688188 R identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371; cell division protein complement(3687436..3688188) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116558.1 CDS SeSA_A3816 NC_011094.1 3688189 3688392 R hypothetical protein complement(3688189..3688392) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116559.1 CDS SeSA_A3817 NC_011094.1 3688649 3690208 D identified by match to protein family HMM TIGR03369; cellulose biosynthesis protein BcsE 3688649..3690208 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116560.1 CDS bcsF NC_011094.1 3690205 3690396 D identified by match to protein family HMM TIGR03493; celllulose biosynthesis operon protein BcsF/YhjT 3690205..3690396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116561.1 CDS yhjU NC_011094.1 3690393 3692072 D identified by match to protein family HMM TIGR03368; cellulose synthase operon protein YhjU 3690393..3692072 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116563.1 CDS SeSA_A3823 NC_011094.1 3692903 3694201 D inner membrane transport protein YhaO 3692903..3694201 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116564.1 CDS dppF NC_011094.1 3694302 3695315 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3694302..3695315) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116565.1 CDS dppD NC_011094.1 3695312 3696295 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3695312..3696295) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116566.1 CDS dppC NC_011094.1 3696306 3697208 R identified by match to protein family HMM PF00528; dipeptide transporter complement(3696306..3697208) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116567.1 CDS dppB NC_011094.1 3697218 3698237 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3697218..3698237) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116568.1 CDS dppA NC_011094.1 3698394 3699974 R identified by match to protein family HMM PF00496; dipeptide ABC transporter substrate-binding protein complement(3698394..3699974) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116569.1 CDS SeSA_A3829 NC_011094.1 3700560 3701885 R identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease complement(3700560..3701885) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116570.1 CDS SeSA_A3830 NC_011094.1 3701943 3703067 R PQQ enzyme repeat complement(3701943..3703067) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116571.1 CDS SeSA_A3831 NC_011094.1 3703120 3703233 D identified by glimmer; hypothetical protein 3703120..3703233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116572.1 CDS SeSA_A3832 NC_011094.1 3703217 3704224 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator 3703217..3704224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116573.1 CDS SeSA_A3835 NC_011094.1 3704550 3706241 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3704550..3706241) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116574.1 CDS SeSA_A3836 NC_011094.1 3706472 3707176 R lipase complement(3706472..3707176) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116575.1 CDS SeSA_A3837 NC_011094.1 3707333 3707914 D 'constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine'; 3-methyladenine DNA glycosylase 3707333..3707914 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116576.1 CDS SeSA_A3838 NC_011094.1 3707892 3708332 D identified by match to protein family HMM PF00583; hypothetical protein 3707892..3708332 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116577.1 CDS SeSA_A3839 NC_011094.1 3708301 3710634 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase complement(3708301..3710634) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116578.1 CDS SeSA_A3840 NC_011094.1 3710787 3711449 D identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3710787..3711449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116579.1 CDS SeSA_A3841 NC_011094.1 3711678 3712652 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3711678..3712652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116580.1 CDS SeSA_A3842 NC_011094.1 3712702 3713412 R hypothetical protein complement(3712702..3713412) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116581.1 CDS SeSA_A3843 NC_011094.1 3713562 3713693 R identified by glimmer; hypothetical protein complement(3713562..3713693) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116582.1 CDS SeSA_A3844 NC_011094.1 3713851 3714141 D transcriptional regulator 3713851..3714141 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116583.1 CDS SeSA_A3845 NC_011094.1 3714429 3714641 D identified by match to protein family HMM PF00313; major cold shock protein 3714429..3714641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116584.1 CDS SeSA_A3846 NC_011094.1 3714814 3715353 D hypothetical protein 3714814..3715353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116585.1 CDS SeSA_A3847 NC_011094.1 3716197 3716463 R identified by match to protein family HMM PF08681; hypothetical protein complement(3716197..3716463) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116586.1 CDS SeSA_A3848 NC_011094.1 3716490 3716621 R identified by glimmer; hypothetical protein complement(3716490..3716621) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116587.1 CDS glyS NC_011094.1 3717964 3720033 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(3717964..3720033) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116588.1 CDS glyQ NC_011094.1 3720043 3720954 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(3720043..3720954) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116589.1 CDS SeSA_A3851 NC_011094.1 3720976 3721113 D identified by glimmer; hypothetical protein 3720976..3721113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116590.1 CDS SeSA_A3852 NC_011094.1 3721093 3721395 R hypothetical protein complement(3721093..3721395) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116591.1 CDS SeSA_A3853 NC_011094.1 3721561 3722556 D identified by match to protein family HMM PF01757; acyltransferase 3721561..3722556 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116592.1 CDS SeSA_A3854 NC_011094.1 3722579 3722932 R identified by match to protein family HMM PF05360; hypothetical protein complement(3722579..3722932) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116593.1 CDS xylA NC_011094.1 3724661 3725983 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3724661..3725983) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116594.1 CDS SeSA_A3858 NC_011094.1 3726065 3726241 R identified by glimmer; hypothetical protein complement(3726065..3726241) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116595.1 CDS SeSA_A3859 NC_011094.1 3726346 3727524 D identified by match to protein family HMM PF00165; xylose operon regulatory protein 3726346..3727524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116596.1 CDS bax NC_011094.1 3727585 3728508 R identified by match to protein family HMM PF01832; hypothetical protein complement(3727585..3728508) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116597.1 CDS SeSA_A3861 NC_011094.1 3728539 3728673 R identified by glimmer; hypothetical protein complement(3728539..3728673) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116598.1 CDS malS NC_011094.1 3728725 3730752 D 'periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds'; periplasmic alpha-amylase 3728725..3730752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116599.1 CDS avtA NC_011094.1 3730926 3732176 D 'transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis'; valine--pyruvate transaminase 3730926..3732176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116600.1 CDS SeSA_A3864 NC_011094.1 3732213 3732686 R identified by match to protein family HMM PF00037; protein AegA complement(3732213..3732686) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116601.1 CDS SeSA_A3865 NC_011094.1 3732803 3733603 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; HTH-type transcriptional regulator complement(3732803..3733603) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116602.1 CDS SeSA_A3866 NC_011094.1 3733833 3734831 D 'NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate'; 2,3-diketo-L-gulonate reductase 3733833..3734831 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116603.1 CDS SeSA_A3867 NC_011094.1 3734843 3735307 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3734843..3735307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116604.1 CDS SeSA_A3868 NC_011094.1 3735331 3736263 D hypothetical protein 3735331..3736263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116605.1 CDS SeSA_A3869 NC_011094.1 3736402 3736875 D 'membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO'; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3736402..3736875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116606.1 CDS SeSA_A3870 NC_011094.1 3736878 3738155 D identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease yian 3736878..3738155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116607.1 CDS SeSA_A3871 NC_011094.1 3738167 3739153 D identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap transporter solute receptor, dctp family protein 3738167..3739153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116608.1 CDS SeSA_A3872 NC_011094.1 3739157 3740653 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3739157..3740653 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116609.1 CDS sgbH NC_011094.1 3740650 3741300 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3740650..3741300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116610.1 CDS SeSA_A3874 NC_011094.1 3741305 3742165 D 'L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate'; L-xylulose 5-phosphate 3-epimerase 3741305..3742165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116611.1 CDS sgbE NC_011094.1 3742159 3742854 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3742159..3742854 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116612.1 CDS SeSA_A3876 NC_011094.1 3743003 3743818 R identified by match to protein family HMM PF00165; transcriptional regulator complement(3743003..3743818) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116613.1 CDS SeSA_A3877 NC_011094.1 3744082 3746037 D identified by match to protein family HMM PF07944; hypothetical protein 3744082..3746037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116614.1 CDS SeSA_A3878 NC_011094.1 3746042 3746227 D hypothetical protein 3746042..3746227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116615.1 CDS aldB NC_011094.1 3746323 3747861 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(3746323..3747861) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116616.1 CDS SeSA_A3880 NC_011094.1 3748030 3748911 D identified by match to protein family HMM PF00480; transcriptional regulator 3748030..3748911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116617.1 CDS SeSA_A3881 NC_011094.1 3748983 3750134 R identified by match to protein family HMM PF00465; alcohol dehydrogenase complement(3748983..3750134) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116618.1 CDS selB NC_011094.1 3750320 3752170 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor complement(3750320..3752170) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116619.1 CDS selA NC_011094.1 3752167 3753558 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3752167..3753558) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116620.1 CDS SeSA_A3884 NC_011094.1 3753657 3754352 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(3753657..3754352) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116621.1 CDS SeSA_A3885 NC_011094.1 3754741 3756657 D identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3754741..3756657 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116622.1 CDS mtlD NC_011094.1 3756878 3758026 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3756878..3758026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116623.1 CDS mtlR NC_011094.1 3758023 3758613 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3758023..3758613 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116624.1 CDS SeSA_A3888 NC_011094.1 3758623 3758832 R hypothetical protein complement(3758623..3758832) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116625.1 CDS SeSA_A3889 NC_011094.1 3759123 3759485 D hypothetical protein 3759123..3759485 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116626.1 CDS SeSA_A3890 NC_011094.1 3759533 3759727 D identified by glimmer; hypothetical protein 3759533..3759727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116627.1 CDS SeSA_A3891 NC_011094.1 3759972 3760655 D hypothetical protein 3759972..3760655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116628.1 CDS SeSA_A3892 NC_011094.1 3760699 3765039 D identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3760699..3765039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116629.1 CDS lldP NC_011094.1 3765338 3766993 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3765338..3766993 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116630.1 CDS SeSA_A3894 NC_011094.1 3766990 3767766 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3766990..3767766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116631.1 CDS lldD NC_011094.1 3767763 3768953 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3767763..3768953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116632.1 CDS SeSA_A3896 NC_011094.1 3769018 3769491 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3769018..3769491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116633.1 CDS SeSA_A3897 NC_011094.1 3769488 3769604 D identified by glimmer; hypothetical protein 3769488..3769604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116634.1 CDS cysE NC_011094.1 3769674 3770495 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3769674..3770495) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116635.1 CDS gpsA NC_011094.1 3770573 3771592 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3770573..3771592) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116636.1 CDS secB NC_011094.1 3771592 3772059 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3771592..3772059) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116637.1 CDS grxC NC_011094.1 3772103 3772354 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(3772103..3772354) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116638.1 CDS SeSA_A3902 NC_011094.1 3772440 3772871 R identified by match to protein family HMM PF00581; rhodanese domain-containing protein complement(3772440..3772871) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116639.1 CDS gpmI NC_011094.1 3773119 3774663 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3773119..3774663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116640.1 CDS SeSA_A3904 NC_011094.1 3774673 3775956 D identified by match to protein family HMM PF01551; hypothetical protein 3774673..3775956 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116641.1 CDS SeSA_A3905 NC_011094.1 3775960 3776922 D identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3775960..3776922 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116642.1 CDS SeSA_A3906 NC_011094.1 3776909 3777943 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(3776909..3777943) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116643.1 CDS tdh NC_011094.1 3778237 3779262 R 'converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism'; L-threonine 3-dehydrogenase complement(3778237..3779262) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116644.1 CDS kbl NC_011094.1 3779272 3780468 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(3779272..3780468) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116645.1 CDS rfaD NC_011094.1 3780671 3781603 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3780671..3781603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116646.1 CDS rfaF NC_011094.1 3781606 3782652 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3781606..3782652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116647.1 CDS rfaC NC_011094.1 3782652 3783605 D identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose--LPS heptosyltransferase 3782652..3783605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116648.1 CDS SeSA_A3912 NC_011094.1 3783645 3784859 D identified by match to protein family HMM PF04932; O-antigen ligase 3783645..3784859 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116649.1 CDS SeSA_A3913 NC_011094.1 3784916 3786061 R identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3784916..3786061) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116650.1 CDS SeSA_A3914 NC_011094.1 3786161 3786970 R lipopolysaccharide core biosynthesis protein complement(3786161..3786970) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116651.1 CDS SeSA_A3915 NC_011094.1 3787120 3787818 R identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein complement(3787120..3787818) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116652.1 CDS SeSA_A3916 NC_011094.1 3787841 3788854 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase complement(3787841..3788854) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116653.1 CDS SeSA_A3917 NC_011094.1 3788872 3789885 R identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase complement(3788872..3789885) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116654.1 CDS SeSA_A3918 NC_011094.1 3789891 3790982 R identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3789891..3790982) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116655.1 CDS SeSA_A3919 NC_011094.1 3791056 3791979 R identified by match to protein family HMM PF07922; UDP-glucose:glucosyl LPS a1,2-glucosyltransferase complement(3791056..3791979) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116656.1 CDS SeSA_A3920 NC_011094.1 3792034 3792831 R identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein RfaP complement(3792034..3792831) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116657.1 CDS SeSA_A3921 NC_011094.1 3792824 3793948 R identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG complement(3792824..3793948) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116658.1 CDS SeSA_A3922 NC_011094.1 3793945 3795015 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein complement(3793945..3795015) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116659.1 CDS waaA NC_011094.1 3795424 3796701 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3795424..3796701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116660.1 CDS coaD NC_011094.1 3796710 3797189 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3796710..3797189 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116661.1 CDS mutM NC_011094.1 3797217 3798026 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3797217..3798026) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116662.1 CDS rpmG NC_011094.1 3798124 3798291 R 'in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif'; 50S ribosomal protein L33 complement(3798124..3798291) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116663.1 CDS rpmB NC_011094.1 3798312 3798548 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3798312..3798548) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116664.1 CDS radC NC_011094.1 3798766 3799431 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3798766..3799431) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119807.1 CDS coaBC NC_011094.1 3799604 3800827 D phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3799604..3800827 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116665.1 CDS dut NC_011094.1 3800805 3801263 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3800805..3801263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116666.1 CDS slmA NC_011094.1 3801371 3801967 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3801371..3801967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116667.1 CDS pyrE NC_011094.1 3802045 3802686 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3802045..3802686) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116668.1 CDS rph NC_011094.1 3802765 3803481 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3802765..3803481) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116669.1 CDS SeSA_A3934 NC_011094.1 3803607 3804470 D identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3803607..3804470 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116670.1 CDS SeSA_A3935 NC_011094.1 3804662 3805924 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family protein 3804662..3805924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116671.1 CDS SeSA_A3936 NC_011094.1 3806368 3806526 D hypothetical protein 3806368..3806526 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116672.1 CDS SeSA_A3937 NC_011094.1 3806527 3807849 D hypothetical protein 3806527..3807849 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116673.1 CDS SeSA_A3938 NC_011094.1 3807903 3808424 R identified by glimmer; hypothetical protein complement(3807903..3808424) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116674.1 CDS SeSA_A3939 NC_011094.1 3809083 3809916 R hypothetical protein complement(3809083..3809916) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116675.1 CDS SeSA_A3940 NC_011094.1 3811188 3811790 R hypothetical protein complement(3811188..3811790) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116676.1 CDS SeSA_A3941 NC_011094.1 3811901 3812026 D identified by glimmer; hypothetical protein 3811901..3812026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116677.1 CDS SeSA_A3942 NC_011094.1 3812412 3813491 D hypothetical protein 3812412..3813491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116678.1 CDS SeSA_A3943 NC_011094.1 3813596 3814498 R identified by match to protein family HMM PF00126; transcriptional regulator, LysR family protein complement(3813596..3814498) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116679.1 CDS SeSA_A3944 NC_011094.1 3814572 3815453 D identified by match to protein family HMM PF00753; beta-lactamase 3814572..3815453 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116680.1 CDS SeSA_A3945 NC_011094.1 3815458 3815580 D identified by glimmer; hypothetical protein 3815458..3815580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116681.1 CDS SeSA_A3946 NC_011094.1 3815704 3816321 D identified by match to protein family HMM PF03458; hypothetical protein 3815704..3816321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116682.1 CDS ligB NC_011094.1 3816318 3818003 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3816318..3818003) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116683.1 CDS gmk NC_011094.1 3818260 3818883 D 'Essential for recycling GMP and indirectly, cGMP'; guanylate kinase 3818260..3818883 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116684.1 CDS rpoZ NC_011094.1 3818938 3819213 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3818938..3819213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116685.1 CDS SeSA_A3950 NC_011094.1 3819232 3821343 D identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3819232..3821343 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116686.1 CDS trmH NC_011094.1 3821348 3822037 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3821348..3822037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116687.1 CDS recG NC_011094.1 3822043 3824124 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3822043..3824124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116688.1 CDS gltS NC_011094.1 3824160 3825365 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(3824160..3825365) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116689.1 CDS SeSA_A3954 NC_011094.1 3825593 3826984 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3825593..3826984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116690.1 CDS SeSA_A3955 NC_011094.1 3827105 3828814 D identified by match to protein family HMM PF05170; AsmA family protein 3827105..3828814 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116691.1 CDS SeSA_A3956 NC_011094.1 3828917 3831235 R 'catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides'; alpha-xylosidase complement(3828917..3831235) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116692.1 CDS SeSA_A3957 NC_011094.1 3831247 3832629 R may be involved in the transport of galactosides-pentoses-hexuronides; transporter complement(3831247..3832629) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116693.1 CDS SeSA_A3959 NC_011094.1 3833276 3833416 D hypothetical protein 3833276..3833416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116694.1 CDS SeSA_A3960 NC_011094.1 3833765 3833896 D hypothetical protein 3833765..3833896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116695.1 CDS SeSA_A3961 NC_011094.1 3834632 3835249 D RmbA 3834632..3835249 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116696.1 CDS SeSA_A3962 NC_011094.1 3835324 3838191 D identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter barrel domain 3835324..3838191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116697.1 CDS SeSA_A3963 NC_011094.1 3838286 3838768 R hypothetical protein complement(3838286..3838768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116698.1 CDS SeSA_A3964 NC_011094.1 3838761 3839525 R identified by match to protein family HMM PF00486; transcriptional regulatory protein C complement(3838761..3839525) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116699.1 CDS SeSA_A3965 NC_011094.1 3840223 3840348 D identified by glimmer; hypothetical protein 3840223..3840348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116700.1 CDS SeSA_A3966 NC_011094.1 3840403 3841083 D identified by match to protein family HMM PF00857; SlsA 3840403..3841083 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116701.1 CDS SeSA_A3967 NC_011094.1 3841251 3841778 R hypothetical protein complement(3841251..3841778) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116702.1 CDS SeSA_A3968 NC_011094.1 3841917 3842048 D identified by glimmer; hypothetical protein 3841917..3842048 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116703.1 CDS mgtA NC_011094.1 3842045 3844771 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase complement(3842045..3844771) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116704.1 CDS SeSA_A3970 NC_011094.1 3844870 3844983 D identified by glimmer; hypothetical protein 3844870..3844983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116705.1 CDS SeSA_A3971 NC_011094.1 3844990 3845667 R identified by match to protein family HMM PF02308; protein MgtC complement(3844990..3845667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116706.1 CDS SeSA_A3972 NC_011094.1 3846146 3847093 D identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 3846146..3847093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116707.1 CDS SeSA_A3973 NC_011094.1 3847136 3848065 R identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein complement(3847136..3848065) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116708.1 CDS SeSA_A3974 NC_011094.1 3848301 3849044 R identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein complement(3848301..3849044) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116709.1 CDS SeSA_A3975 NC_011094.1 3849031 3850140 R identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent enzyme complement(3849031..3850140) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116710.1 CDS SeSA_A3976 NC_011094.1 3850144 3851004 R identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID complement(3850144..3851004) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116711.1 CDS SeSA_A3977 NC_011094.1 3851001 3851750 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(3851001..3851750) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116712.1 CDS SeSA_A3978 NC_011094.1 3851896 3852381 R identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB complement(3851896..3852381) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116713.1 CDS SeSA_A3979 NC_011094.1 3852392 3852817 R identified by match to protein family HMM PF03610; PTS system fructose transporter subunit IIA complement(3852392..3852817) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116714.1 CDS SeSA_A3980 NC_011094.1 3853036 3855834 R identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; sigma-54 dependent transcription regulator complement(3853036..3855834) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116715.1 CDS SeSA_A3981 NC_011094.1 3855846 3855959 R identified by glimmer; hypothetical protein complement(3855846..3855959) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116716.1 CDS SeSA_A3982 NC_011094.1 3856031 3856324 D hypothetical protein 3856031..3856324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116717.1 CDS SeSA_A3983 NC_011094.1 3856430 3857812 D identified by match to protein family HMM PF00232; beta-glucosidase 3856430..3857812 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119808.1 CDS SeSA_A3984 NC_011094.1 3857872 3859065 R purine ribonucleoside efflux pump NepI complement(3857872..3859065) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116718.1 CDS SeSA_A3985 NC_011094.1 3859236 3859640 D identified by match to protein family HMM PF06296; hypothetical protein 3859236..3859640 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116719.1 CDS SeSA_A3986 NC_011094.1 3859624 3859947 D identified by match to protein family HMM PF01381; DNA-binding protein 3859624..3859947 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116720.1 CDS SeSA_A3987 NC_011094.1 3860132 3860911 D hypothetical protein 3860132..3860911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116721.1 CDS SeSA_A3988 NC_011094.1 3860939 3861100 R hypothetical protein complement(3860939..3861100) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116722.1 CDS SeSA_A3989 NC_011094.1 3861262 3861531 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphotransferase system HPr enzyme complement(3861262..3861531) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116723.1 CDS gatY NC_011094.1 3861541 3862401 R 'class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis'; fructose-1,6-bisphosphate aldolase complement(3861541..3862401) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116724.1 CDS SeSA_A3991 NC_011094.1 3862464 3863948 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; sugar kinase complement(3862464..3863948) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116725.1 CDS SeSA_A3992 NC_011094.1 3863941 3865299 R identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC complement(3863941..3865299) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116726.1 CDS SeSA_A3993 NC_011094.1 3865376 3865663 R PTS system transporter subunit IIB complement(3865376..3865663) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116727.1 CDS SeSA_A3994 NC_011094.1 3865660 3866133 R identified by match to protein family HMM PF00359; phosphotransferase system mannitol/fructose-specific IIA domain complement(3865660..3866133) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116728.1 CDS SeSA_A3995 NC_011094.1 3866151 3866894 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3866151..3866894) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116729.1 CDS SeSA_A3996 NC_011094.1 3867247 3867699 R identified by match to protein family HMM PF06711; hypothetical protein complement(3867247..3867699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116730.1 CDS uhpT NC_011094.1 3867892 3869283 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3867892..3869283) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116731.1 CDS uhpC NC_011094.1 3869426 3870754 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(3869426..3870754) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116732.1 CDS uhpB NC_011094.1 3870764 3872266 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(3870764..3872266) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116733.1 CDS uhpA NC_011094.1 3872266 3872856 R 'response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter'; DNA-binding transcriptional activator UhpA complement(3872266..3872856) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116734.1 CDS SeSA_A4001 NC_011094.1 3873010 3874023 R DeoX complement(3873010..3874023) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116735.1 CDS fucP NC_011094.1 3874035 3875351 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease complement(3874035..3875351) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116736.1 CDS rbsK NC_011094.1 3875382 3876302 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(3875382..3876302) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116737.1 CDS SeSA_A4004 NC_011094.1 3876627 3877412 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 3876627..3877412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116738.1 CDS ilvN NC_011094.1 3877414 3877704 R 'with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit'; acetolactate synthase 1 regulatory subunit complement(3877414..3877704) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116739.1 CDS ilvB NC_011094.1 3877708 3879396 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit complement(3877708..3879396) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116740.1 CDS SeSA_A4007 NC_011094.1 3880417 3881277 D identified by match to protein family HMM PF00892; hypothetical protein 3880417..3881277 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116741.1 CDS emrD NC_011094.1 3881504 3882664 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3881504..3882664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116742.1 CDS dsdC NC_011094.1 3883740 3884678 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(3883740..3884678) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116743.1 CDS SeSA_A4010 NC_011094.1 3884889 3886226 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3884889..3886226 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116744.1 CDS dsdA NC_011094.1 3886244 3887566 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3886244..3887566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116745.1 CDS SeSA_A4012 NC_011094.1 3887648 3888178 R f165 complement(3887648..3888178) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116746.1 CDS SeSA_A4013 NC_011094.1 3888175 3888537 R hypothetical protein complement(3888175..3888537) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116747.1 CDS SeSA_A4014 NC_011094.1 3888527 3888874 R identified by match to protein family HMM PF02656; hypothetical protein complement(3888527..3888874) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116748.1 CDS SeSA_A4015 NC_011094.1 3888894 3889028 R identified by glimmer; hypothetical protein complement(3888894..3889028) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116749.1 CDS SeSA_A4016 NC_011094.1 3889028 3889156 D identified by glimmer; hypothetical protein 3889028..3889156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116750.1 CDS SeSA_A4017 NC_011094.1 3889318 3890979 R identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein complement(3889318..3890979) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116751.1 CDS ibpB NC_011094.1 3891168 3891596 R '16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent'; heat shock chaperone IbpB complement(3891168..3891596) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116752.1 CDS ibpA NC_011094.1 3891706 3892119 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(3891706..3892119) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116753.1 CDS SeSA_A4021 NC_011094.1 3892383 3892502 R hypothetical protein complement(3892383..3892502) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116754.1 CDS SeSA_A4020 NC_011094.1 3892471 3892761 D identified by match to protein family HMM PF07119; hypothetical protein 3892471..3892761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119809.1 CDS SeSA_A4022 NC_011094.1 3892763 3893989 R hypothetical protein complement(3892763..3893989) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116755.1 CDS SeSA_A4023 NC_011094.1 3894111 3895154 R identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 complement(3894111..3895154) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116756.1 CDS SeSA_A4024 NC_011094.1 3895151 3895708 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE complement(3895151..3895708) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116757.1 CDS ccmF NC_011094.1 3895705 3897636 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF complement(3895705..3897636) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116758.1 CDS SeSA_A4026 NC_011094.1 3897633 3898112 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(3897633..3898112) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116759.1 CDS ccmD NC_011094.1 3898109 3898282 R identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD complement(3898109..3898282) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116760.1 CDS SeSA_A4028 NC_011094.1 3898318 3899064 R identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC transporter protein complement(3898318..3899064) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116761.1 CDS ccmB NC_011094.1 3899107 3899763 R identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB complement(3899107..3899763) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116762.1 CDS ccmA NC_011094.1 3899763 3900380 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(3899763..3900380) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116763.1 CDS SeSA_A4031 NC_011094.1 3900386 3901786 R identified by match to protein family HMM PF03150; cytoChrome-c peroxidase complement(3900386..3901786) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116764.1 CDS torD NC_011094.1 3901976 3902608 R 'TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor'; chaperone protein TorD complement(3901976..3902608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116765.1 CDS torA NC_011094.1 3902601 3905153 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA complement(3902601..3905153) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116766.1 CDS torC NC_011094.1 3905143 3906327 R identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(3905143..3906327) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116767.1 CDS SeSA_A4035 NC_011094.1 3906421 3907149 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3906421..3907149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116768.1 CDS torT NC_011094.1 3907122 3908162 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(3907122..3908162) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116769.1 CDS SeSA_A4038 NC_011094.1 3908187 3908303 R identified by glimmer; hypothetical protein complement(3908187..3908303) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116770.1 CDS torS NC_011094.1 3908290 3910977 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3908290..3910977 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116771.1 CDS SeSA_A4039 NC_011094.1 3911082 3912209 R hypothetical protein complement(3911082..3912209) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116772.1 CDS SeSA_A4040 NC_011094.1 3912206 3913345 R outer membrane protein complement(3912206..3913345) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116773.1 CDS SeSA_A4041 NC_011094.1 3913342 3914364 R hypothetical protein complement(3913342..3914364) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116774.1 CDS SeSA_A4042 NC_011094.1 3914366 3914479 D identified by glimmer; hypothetical protein 3914366..3914479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116775.1 CDS SeSA_A4043 NC_011094.1 3914566 3915378 R 'YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins'; sugar phosphatase complement(3914566..3915378) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116776.1 CDS SeSA_A4044 NC_011094.1 3915684 3916946 D identified by match to protein family HMM PF07690; permease 3915684..3916946 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116777.1 CDS SeSA_A4045 NC_011094.1 3916963 3918153 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 3916963..3918153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116778.1 CDS SeSA_A4046 NC_011094.1 3918268 3919164 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 3918268..3919164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116779.1 CDS gyrB NC_011094.1 3919183 3921597 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(3919183..3921597) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116780.1 CDS recF NC_011094.1 3921626 3922699 R 'Required for DNA replication; binds preferentially to single-stranded, linear DNA'; recombination protein F complement(3921626..3922699) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116781.1 CDS dnaN NC_011094.1 3922847 3923947 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(3922847..3923947) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116782.1 CDS dnaA NC_011094.1 3923952 3925352 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(3923952..3925352) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116783.1 CDS rpmH NC_011094.1 3926013 3926153 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3926013..3926153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116784.1 CDS rnpA NC_011094.1 3926170 3926529 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3926170..3926529 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116785.1 CDS SeSA_A4054 NC_011094.1 3926753 3928399 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3926753..3928399 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116786.1 CDS trmE NC_011094.1 3928541 3929905 D 'in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE'; tRNA modification GTPase TrmE 3928541..3929905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116787.1 CDS SeSA_A4056 NC_011094.1 3930088 3931275 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 3930088..3931275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116788.1 CDS SeSA_A4057 NC_011094.1 3931244 3932203 D Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 3931244..3932203 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116789.1 CDS SeSA_A4058 NC_011094.1 3932361 3933116 D o252 3932361..3933116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116790.1 CDS SeSA_A4059 NC_011094.1 3933134 3933700 D identified by match to protein family HMM PF03358; hypothetical protein 3933134..3933700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116791.1 CDS SeSA_A4060 NC_011094.1 3933744 3935081 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; hypothetical protein complement(3933744..3935081) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116792.1 CDS SeSA_A4061 NC_011094.1 3935250 3935915 D 'YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily'; 6-phosphogluconate phosphatase 3935250..3935915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116793.1 CDS phoU NC_011094.1 3936010 3936735 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3936010..3936735) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116794.1 CDS pstB NC_011094.1 3936750 3937559 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3936750..3937559) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116795.1 CDS pstA NC_011094.1 3937610 3938500 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(3937610..3938500) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116796.1 CDS pstC NC_011094.1 3938500 3939459 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(3938500..3939459) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116797.1 CDS pstS NC_011094.1 3939596 3940636 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein complement(3939596..3940636) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116798.1 CDS SeSA_A4067 NC_011094.1 3940802 3942175 R identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; pts system fructose-specific eiibc component complement(3940802..3942175) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116799.1 CDS SeSA_A4068 NC_011094.1 3942225 3943043 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3942225..3943043) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116800.1 CDS SeSA_A4069 NC_011094.1 3943105 3944895 D identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 3943105..3944895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116801.1 CDS glmS NC_011094.1 3945046 3946875 R 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source'; glucosamine--fructose-6-phosphate aminotransferase complement(3945046..3946875) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116802.1 CDS glmU NC_011094.1 3947064 3948434 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3947064..3948434) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116803.1 CDS SeSA_A4072 NC_011094.1 3948575 3948706 R identified by glimmer; hypothetical protein complement(3948575..3948706) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116804.1 CDS SeSA_A4073 NC_011094.1 3948754 3949452 R hypothetical protein complement(3948754..3949452) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116805.1 CDS atpC NC_011094.1 3949682 3950095 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(3949682..3950095) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116806.1 CDS atpD NC_011094.1 3950122 3951504 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(3950122..3951504) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116807.1 CDS atpG NC_011094.1 3951531 3952394 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(3951531..3952394) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116808.1 CDS atpA NC_011094.1 3952445 3953986 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(3952445..3953986) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116809.1 CDS atpH NC_011094.1 3953999 3954532 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(3953999..3954532) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116810.1 CDS atpF NC_011094.1 3954547 3955017 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(3954547..3955017) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116811.1 CDS atpE NC_011094.1 3955077 3955316 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(3955077..3955316) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116812.1 CDS atpB NC_011094.1 3955363 3956178 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(3955363..3956178) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116813.1 CDS atpI NC_011094.1 3956187 3956312 R ATP synthase F0, I subunit complement(3956187..3956312) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116814.1 CDS SeSA_A4083 NC_011094.1 3956682 3956825 R hypothetical protein complement(3956682..3956825) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116815.1 CDS SeSA_A4084 NC_011094.1 3956933 3957070 R identified by glimmer; hypothetical protein complement(3956933..3957070) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116816.1 CDS gidB NC_011094.1 3957183 3957806 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3957183..3957806) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116817.1 CDS gidA NC_011094.1 3957909 3959798 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3957909..3959798) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116818.1 CDS mioC NC_011094.1 3960177 3960620 R 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin complement(3960177..3960620) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116819.1 CDS asnC NC_011094.1 3960710 3961168 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(3960710..3961168) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116820.1 CDS asnA NC_011094.1 3961319 3962311 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 3961319..3962311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116821.1 CDS yieM NC_011094.1 3962316 3963767 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(3962316..3963767) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116822.1 CDS SeSA_A4091 NC_011094.1 3963761 3965257 R 'interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase'; regulatory ATPase RavA complement(3963761..3965257) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116823.1 CDS trkD NC_011094.1 3965605 3967473 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 3965605..3967473 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116824.1 CDS rbsD NC_011094.1 3967690 3968109 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 3967690..3968109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116825.1 CDS rbsA NC_011094.1 3968072 3969622 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 3968072..3969622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116826.1 CDS rbsC NC_011094.1 3969628 3970593 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 3969628..3970593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116827.1 CDS rbsB NC_011094.1 3970618 3971508 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 3970618..3971508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116828.1 CDS rbsK NC_011094.1 3971641 3972570 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 3971641..3972570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116829.1 CDS SeSA_A4098 NC_011094.1 3972574 3973572 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 3972574..3973572 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116830.1 CDS SeSA_A4099 NC_011094.1 3973538 3974965 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO complement(3973538..3974965) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116831.1 CDS SeSA_A4100 NC_011094.1 3974977 3975681 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator, GntR family protein complement(3974977..3975681) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116832.1 CDS SeSA_A4108 NC_011094.1 3981582 3982418 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(3981582..3982418) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116833.1 CDS SeSA_A4109 NC_011094.1 3982537 3982875 D identified by match to protein family HMM PF04219; hypothetical protein 3982537..3982875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116834.1 CDS SeSA_A4110 NC_011094.1 3982900 3984420 R 'among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function'; ATP-dependent protease complement(3982900..3984420) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116835.1 CDS ilvG NC_011094.1 3985010 3986656 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 3985010..3986656 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116836.1 CDS ilvM NC_011094.1 3986653 3986916 D acetolactate synthase 2 regulatory subunit 3986653..3986916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116837.1 CDS ilvE NC_011094.1 3986934 3987863 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3986934..3987863 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116838.1 CDS ilvD NC_011094.1 3988023 3989873 D 'catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis'; dihydroxy-acid dehydratase 3988023..3989873 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116839.1 CDS ilvA NC_011094.1 3989876 3991420 D 'threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway'; threonine dehydratase 3989876..3991420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116840.1 CDS SeSA_A4116 NC_011094.1 3991442 3992227 D identified by match to protein family HMM PF09365; hypothetical protein 3991442..3992227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116841.1 CDS SeSA_A4117 NC_011094.1 3992626 3993015 R hypothetical protein complement(3992626..3993015) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116842.1 CDS SeSA_A4118 NC_011094.1 3993028 3993915 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(3993028..3993915) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116843.1 CDS SeSA_A4119 NC_011094.1 3994080 3995555 D 'catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis'; ketol-acid reductoisomerase 3994080..3995555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116844.1 CDS SeSA_A4120 NC_011094.1 3995647 3995928 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C complement(3995647..3995928) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116845.1 CDS SeSA_A4121 NC_011094.1 3996032 3996823 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 3996032..3996823 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116846.1 CDS SeSA_A4122 NC_011094.1 3996852 3997595 D identified by match to protein family HMM PF01048; uridine phosphorylase 3996852..3997595 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116847.1 CDS SeSA_A4123 NC_011094.1 3997592 3998323 D identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; intergral membrane NMN transport protein PnuC 3997592..3998323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116848.2 CDS rep NC_011094.1 3998423 4000447 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 3998423..4000447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116849.1 CDS gppA NC_011094.1 4000487 4001968 R 'catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation'; guanosine pentaphosphate phosphohydrolase complement(4000487..4001968) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116850.1 CDS rhlB NC_011094.1 4002087 4003352 R 'enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation'; ATP-dependent RNA helicase RhlB complement(4002087..4003352) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116851.1 CDS trxA NC_011094.1 4003496 4003825 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4003496..4003825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116852.1 CDS rho NC_011094.1 4004244 4005503 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4004244..4005503 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116853.1 CDS wecA NC_011094.1 4005733 4006836 D identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4005733..4006836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116854.1 CDS SeSA_A4130 NC_011094.1 4006848 4007894 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4006848..4007894 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116855.1 CDS SeSA_A4131 NC_011094.1 4007950 4009080 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4007950..4009080 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116856.1 CDS wecC NC_011094.1 4009077 4010339 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4009077..4010339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116857.1 CDS rfbB2 NC_011094.1 4010339 4011406 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4010339..4011406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116858.1 CDS rfbA NC_011094.1 4011439 4012320 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 4011439..4012320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116859.1 CDS wecD NC_011094.1 4012298 4012975 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4012298..4012975 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116860.1 CDS wecE NC_011094.1 4012980 4014110 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4012980..4014110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116861.1 CDS SeSA_A4137 NC_011094.1 4014112 4015362 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4014112..4015362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116862.1 CDS wecF NC_011094.1 4015359 4016438 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4015359..4016438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116863.1 CDS wzyE NC_011094.1 4016435 4017793 D enterobacterial common antigen polymerase; common antigen polymerase 4016435..4017793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116864.1 CDS SeSA_A4140 NC_011094.1 4017790 4018530 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4017790..4018530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116865.1 CDS SeSA_A4141 NC_011094.1 4018737 4020122 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4018737..4020122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116866.1 CDS SeSA_A4146 NC_011094.1 4020686 4020850 D identified by glimmer; hypothetical protein 4020686..4020850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116867.1 CDS hemY NC_011094.1 4021239 4022438 R identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein complement(4021239..4022438) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116868.1 CDS SeSA_A4149 NC_011094.1 4022438 4023607 R identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase complement(4022438..4023607) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116869.1 CDS hemD NC_011094.1 4023629 4024369 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4023629..4024369) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116870.1 CDS hemC NC_011094.1 4024366 4025307 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4024366..4025307) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116871.1 CDS cyaA NC_011094.1 4025684 4028230 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4025684..4028230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116872.1 CDS cyaY NC_011094.1 4028308 4028628 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4028308..4028628) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116873.1 CDS SeSA_A4154 NC_011094.1 4028698 4029087 R hypothetical protein complement(4028698..4029087) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116874.1 CDS SeSA_A4155 NC_011094.1 4029066 4031078 R hypothetical protein complement(4029066..4031078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116875.1 CDS SeSA_A4156 NC_011094.1 4031264 4031467 D lipoprotein 4031264..4031467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116876.1 CDS dapF NC_011094.1 4031504 4032328 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4031504..4032328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116877.1 CDS SeSA_A4158 NC_011094.1 4032325 4033032 D identified by match to protein family HMM PF04340; hypothetical protein 4032325..4033032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116878.1 CDS xerC NC_011094.1 4033029 4033931 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4033029..4033931 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116879.1 CDS SeSA_A4160 NC_011094.1 4033931 4034647 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4033931..4034647 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116880.1 CDS uvrD NC_011094.1 4034783 4036945 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4034783..4036945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116881.1 CDS corA NC_011094.1 4037417 4038367 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4037417..4038367 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116882.1 CDS rarD NC_011094.1 4038441 4039337 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein complement(4038441..4039337) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116883.1 CDS SeSA_A4164 NC_011094.1 4039381 4039848 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein complement(4039381..4039848) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116884.1 CDS SeSA_A4165 NC_011094.1 4040013 4040882 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4040013..4040882 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116885.1 CDS recQ NC_011094.1 4040948 4042795 D 'functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway'; ATP-dependent DNA helicase RecQ 4040948..4042795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116886.1 CDS SeSA_A4167 NC_011094.1 4042859 4043479 D identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4042859..4043479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116887.1 CDS rhtB NC_011094.1 4043519 4044139 R identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein complement(4043519..4044139) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116888.1 CDS pldB NC_011094.1 4044250 4045266 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4044250..4045266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119810.1 CDS SeSA_A4170 NC_011094.1 4045282 4046082 D sugar phosphatase 4045282..4046082 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116889.1 CDS metR NC_011094.1 4046950 4047903 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR complement(4046950..4047903) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116890.1 CDS metE NC_011094.1 4048152 4050416 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4048152..4050416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116891.1 CDS SeSA_A4173 NC_011094.1 4050480 4050599 D identified by glimmer; hypothetical protein 4050480..4050599 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116892.1 CDS SeSA_A4174 NC_011094.1 4050751 4052094 D identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4050751..4052094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116893.2 CDS SeSA_A4175 NC_011094.1 4052174 4052986 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4052174..4052986) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116894.1 CDS udp NC_011094.1 4053245 4054006 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4053245..4054006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116895.1 CDS SeSA_A4177 NC_011094.1 4054146 4055576 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4054146..4055576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116896.1 CDS ubiE NC_011094.1 4055672 4056427 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4055672..4056427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116897.1 CDS SeSA_A4179 NC_011094.1 4056437 4057042 D identified by match to protein family HMM PF02036; hypothetical protein 4056437..4057042 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116898.1 CDS ubiB NC_011094.1 4057039 4058679 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4057039..4058679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116899.1 CDS tatA NC_011094.1 4058886 4059140 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4058886..4059140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116900.1 CDS SeSA_A4182 NC_011094.1 4059144 4059692 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4059144..4059692 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116901.1 CDS tatC NC_011094.1 4059695 4060474 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4059695..4060474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116902.1 CDS SeSA_A4184 NC_011094.1 4060504 4061298 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4060504..4061298 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116903.1 CDS rfaH NC_011094.1 4061306 4061794 R identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH complement(4061306..4061794) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116904.1 CDS ubiD NC_011094.1 4061980 4063458 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4061980..4063458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116905.1 CDS fre NC_011094.1 4063544 4064245 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4063544..4064245 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116906.1 CDS SeSA_A4188 NC_011094.1 4064499 4066322 D identified by match to protein family HMM PF05935; arylsulfotransferase 4064499..4066322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116907.1 CDS fadA NC_011094.1 4066519 4067682 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4066519..4067682) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116908.1 CDS fadB NC_011094.1 4067692 4069881 R 'includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids'; multifunctional fatty acid oxidation complex subunit alpha complement(4067692..4069881) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116909.1 CDS pepQ NC_011094.1 4070071 4071402 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4070071..4071402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116910.1 CDS SeSA_A4192 NC_011094.1 4071402 4072016 D identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4071402..4072016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116911.1 CDS trkH NC_011094.1 4072055 4073506 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4072055..4073506 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116912.1 CDS hemG NC_011094.1 4073518 4074063 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4073518..4074063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116913.1 CDS SeSA_A4202 NC_011094.1 4079455 4079613 R identified by glimmer; hypothetical protein complement(4079455..4079613) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116914.1 CDS mobB NC_011094.1 4080021 4080551 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4080021..4080551) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116915.1 CDS mobA NC_011094.1 4080533 4081117 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4080533..4081117) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116916.1 CDS SeSA_A4205 NC_011094.1 4081187 4081456 D identified by match to protein family HMM PF06288; hypothetical protein 4081187..4081456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116917.1 CDS SeSA_A4206 NC_011094.1 4081533 4082519 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4081533..4082519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116918.1 CDS SeSA_A4207 NC_011094.1 4082536 4083159 D identified by match to protein family HMM PF01323; protein disulfide isomerase I 4082536..4083159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116919.1 CDS SeSA_A4208 NC_011094.1 4083172 4084080 R identified by match to protein family HMM PF01553; acyltransferase complement(4083172..4084080) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116920.1 CDS SeSA_A4209 NC_011094.1 4084278 4084409 R identified by glimmer; hypothetical protein complement(4084278..4084409) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116921.1 CDS polA NC_011094.1 4084468 4087254 D 'has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair'; DNA polymerase I 4084468..4087254 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116922.1 CDS engB NC_011094.1 4087589 4088221 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4087589..4088221) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116923.1 CDS SeSA_A4214 NC_011094.1 4088804 4089319 D identified by match to protein family HMM PF04220; hypothetical protein 4088804..4089319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116924.1 CDS hemN NC_011094.1 4089508 4090881 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4089508..4090881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116925.1 CDS glnG NC_011094.1 4091194 4092603 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4091194..4092603) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116926.1 CDS glnL NC_011094.1 4092612 4093661 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4092612..4093661) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116927.1 CDS glnA NC_011094.1 4093936 4095345 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4093936..4095345) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116928.1 CDS typA NC_011094.1 4095721 4097544 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4095721..4097544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116929.1 CDS SeSA_A4220 NC_011094.1 4097599 4098333 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase complement(4097599..4098333) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116930.1 CDS SeSA_A4221 NC_011094.1 4098318 4099196 R hypothetical protein complement(4098318..4099196) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116931.1 CDS SeSA_A4222 NC_011094.1 4099193 4100434 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4099193..4100434) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116932.1 CDS SeSA_A4223 NC_011094.1 4100436 4101311 R membrane-associated metal-dependent hydrolase complement(4100436..4101311) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116933.1 CDS SeSA_A4224 NC_011094.1 4101304 4102290 R identified by match to protein family HMM PF08443; hypothetical protein complement(4101304..4102290) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116934.1 CDS SeSA_A4225 NC_011094.1 4102342 4103190 R hypothetical protein complement(4102342..4103190) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116935.1 CDS ompL NC_011094.1 4103347 4104039 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L complement(4103347..4104039) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116936.1 CDS SeSA_A4227 NC_011094.1 4104107 4105528 R identified by match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter complement(4104107..4105528) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116937.1 CDS SeSA_A4228 NC_011094.1 4105574 4106956 R identified by match to protein family HMM TIGR00792; inner membrane symporter YihP complement(4105574..4106956) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116938.1 CDS SeSA_A4229 NC_011094.1 4107002 4109038 R identified by match to protein family HMM PF01055; alpha-glucosidase complement(4107002..4109038) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116939.1 CDS SeSA_A4230 NC_011094.1 4109082 4109924 R identified by match to protein family HMM PF01263; aldose-1-epimerase complement(4109082..4109924) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116940.1 CDS SeSA_A4231 NC_011094.1 4109943 4111184 R identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase complement(4109943..4111184) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116941.1 CDS SeSA_A4232 NC_011094.1 4111200 4112078 R identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase complement(4111200..4112078) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116942.1 CDS SeSA_A4233 NC_011094.1 4112101 4112997 R identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase complement(4112101..4112997) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116943.1 CDS SeSA_A4234 NC_011094.1 4112985 4113104 R identified by glimmer; hypothetical protein complement(4112985..4113104) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116944.1 CDS SeSA_A4235 NC_011094.1 4113162 4114058 D identified by match to protein family HMM PF00294; kinase, PfkB family protein 4113162..4114058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116945.1 CDS SeSA_A4236 NC_011094.1 4114092 4114895 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4114092..4114895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116946.1 CDS yihX NC_011094.1 4115086 4115685 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4115086..4115685 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116947.1 CDS rbn NC_011094.1 4115679 4116551 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4115679..4116551 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116948.1 CDS dtd NC_011094.1 4116548 4116985 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4116548..4116985 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116949.1 CDS SeSA_A4240 NC_011094.1 4116982 4117971 D identified by match to protein family HMM PF00583; match to protein family HMM PF09500; match to protein family HMM TIGR02447; acetyltransferase, gnat family protein 4116982..4117971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116950.1 CDS SeSA_A4241 NC_011094.1 4117986 4118414 R identified by match to protein family HMM PF01381; Sea41 complement(4117986..4118414) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116951.1 CDS SeSA_A4242 NC_011094.1 4118429 4118740 R Sea40 complement(4118429..4118740) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116952.1 CDS SeSA_A4243 NC_011094.1 4118826 4119755 R identified by match to protein family HMM PF07859; acetyl esterase complement(4118826..4119755) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116953.1 CDS SeSA_A4245 NC_011094.1 4119949 4120068 R hypothetical protein complement(4119949..4120068) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116954.1 CDS SeSA_A4244 NC_011094.1 4119973 4120284 D hypothetical protein 4119973..4120284 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116955.1 CDS SeSA_A4246 NC_011094.1 4120285 4120575 D identified by match to protein family HMM PF01381; transcriptional regulator, XRE family protein 4120285..4120575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116956.1 CDS fdhE NC_011094.1 4120622 4121551 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4120622..4121551) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116957.1 CDS fdoI NC_011094.1 4121548 4122183 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4121548..4122183) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116958.1 CDS fdoH NC_011094.1 4122180 4123082 R identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O, iron-sulfur subunit complement(4122180..4123082) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116959.1 CDS fdhD NC_011094.1 4126340 4127176 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4126340..4127176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116960.1 CDS SeSA_A4253 NC_011094.1 4127369 4128469 D hypothetical protein 4127369..4128469 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116961.1 CDS SeSA_A4254 NC_011094.1 4128825 4129148 R identified by match to protein family HMM PF05437; branched-chain amino acid transporter complement(4128825..4129148) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116962.1 CDS SeSA_A4255 NC_011094.1 4129148 4129807 R identified by match to protein family HMM PF03591; AzlC family protein complement(4129148..4129807) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116963.1 CDS SeSA_A4256 NC_011094.1 4129908 4130456 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, XRE family protein 4129908..4130456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116964.1 CDS rhaU NC_011094.1 4130545 4130859 R identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase complement(4130545..4130859) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116965.1 CDS fucO NC_011094.1 4130856 4132004 R identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase complement(4130856..4132004) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116966.1 CDS rhaD NC_011094.1 4132131 4132958 R identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase complement(4132131..4132958) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116967.1 CDS rhaA NC_011094.1 4133101 4134360 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4133101..4134360) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116968.1 CDS rhaB NC_011094.1 4134357 4135826 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4134357..4135826) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116969.1 CDS SeSA_A4262 NC_011094.1 4136114 4136950 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4136114..4136950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116970.1 CDS SeSA_A4263 NC_011094.1 4137103 4137951 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4137103..4137951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116971.1 CDS rhaT NC_011094.1 4137948 4138982 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4137948..4138982) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116972.1 CDS SeSA_A4265 NC_011094.1 4138986 4139117 D hypothetical protein 4138986..4139117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116973.1 CDS SeSA_A4266 NC_011094.1 4139152 4139265 D identified by glimmer; hypothetical protein 4139152..4139265 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116974.1 CDS SeSA_A4267 NC_011094.1 4139451 4139576 D identified by glimmer; hypothetical protein 4139451..4139576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116975.1 CDS SeSA_A4268 NC_011094.1 4139613 4140284 D identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4139613..4140284 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116976.1 CDS SeSA_A4269 NC_011094.1 4140442 4141749 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter dctm subunit complement(4140442..4141749) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116977.1 CDS SeSA_A4270 NC_011094.1 4141742 4142257 R identified by match to protein family HMM PF04290; trap dicarboxylate transporter dctq subunit complement(4141742..4142257) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116978.1 CDS SeSA_A4271 NC_011094.1 4142276 4143259 R identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter dctp subunit complement(4142276..4143259) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116979.1 CDS sodA NC_011094.1 4143588 4144208 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4143588..4144208 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116980.1 CDS SeSA_A4273 NC_011094.1 4144278 4144967 D identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4144278..4144967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116981.1 CDS SeSA_A4274 NC_011094.1 4144979 4145374 D hypothetical protein 4144979..4145374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116982.1 CDS cpxA NC_011094.1 4145425 4146798 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4145425..4146798) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116983.1 CDS cpxR NC_011094.1 4146795 4147493 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4146795..4147493) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116984.1 CDS cpxP NC_011094.1 4147644 4148144 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4147644..4148144 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116985.1 CDS fieF NC_011094.1 4148292 4149194 D 'member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers'; ferrous iron efflux protein F 4148292..4149194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116986.1 CDS pfkA NC_011094.1 4149379 4150341 D 'catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis'; 6-phosphofructokinase 4149379..4150341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116987.1 CDS SeSA_A4280 NC_011094.1 4150545 4151534 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4150545..4151534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119811.1 CDS cdh NC_011094.1 4151635 4152390 D CDP-diacylglycerol pyrophosphatase 4151635..4152390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116988.1 CDS SeSA_A4282 NC_011094.1 4152653 4153987 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4152653..4153987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116989.1 CDS SeSA_A4283 NC_011094.1 4153998 4154957 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4153998..4154957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116990.1 CDS SeSA_A4284 NC_011094.1 4154967 4156007 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase superfamily protein 4154967..4156007 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116991.1 CDS SeSA_A4285 NC_011094.1 4156070 4156792 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; regulatory protein GntR family protein 4156070..4156792 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116992.1 CDS SeSA_A4287 NC_011094.1 4157291 4157641 R identified by match to protein family HMM PF07883; polyketide synthase complement(4157291..4157641) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116993.1 CDS SeSA_A4288 NC_011094.1 4157655 4159205 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase complement(4157655..4159205) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116994.1 CDS SeSA_A4289 NC_011094.1 4159334 4160293 R identified by match to protein family HMM PF04198; sugar-binding domain-containing protein complement(4159334..4160293) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116995.1 CDS SeSA_A4290 NC_011094.1 4160549 4162084 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4160549..4162084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116996.1 CDS SeSA_A4291 NC_011094.1 4162081 4163121 D identified by match to protein family HMM PF02653; ABC transporter permease 4162081..4163121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116997.1 CDS SeSA_A4292 NC_011094.1 4163121 4164119 D identified by match to protein family HMM PF02653; ABC transporter permease 4163121..4164119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116998.1 CDS SeSA_A4293 NC_011094.1 4164127 4165170 D hypothetical protein 4164127..4165170 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002116999.1 CDS SeSA_A4294 NC_011094.1 4165199 4166074 D identified by match to protein family HMM PF01791; aldolase 4165199..4166074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117000.1 CDS SeSA_A4295 NC_011094.1 4166118 4166447 D identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4166118..4166447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117001.1 CDS SeSA_A4296 NC_011094.1 4166457 4167221 D identified by match to protein family HMM PF00834; epimerase 4166457..4167221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117002.1 CDS tpiA NC_011094.1 4167313 4168080 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4167313..4168080) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117003.1 CDS SeSA_A4298 NC_011094.1 4168193 4168789 R identified by match to protein family HMM PF07305; hypothetical protein complement(4168193..4168789) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117004.1 CDS SeSA_A4299 NC_011094.1 4168890 4169318 D identified by match to protein family HMM PF05656; hypothetical protein 4168890..4169318 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117005.1 CDS SeSA_A4300 NC_011094.1 4169428 4170174 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase complement(4169428..4170174) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117006.1 CDS glpX NC_011094.1 4170271 4171281 R 'type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese'; fructose 1,6-bisphosphatase II complement(4170271..4171281) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117007.1 CDS glpK NC_011094.1 4171393 4172901 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4171393..4172901) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117008.1 CDS glpF NC_011094.1 4172922 4173767 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(4172922..4173767) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117009.1 CDS SeSA_A4304 NC_011094.1 4174166 4174405 D identified by match to protein family HMM PF06005; hypothetical protein 4174166..4174405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117010.1 CDS rraA NC_011094.1 4174627 4175112 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4174627..4175112) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117011.1 CDS menA NC_011094.1 4175205 4176146 R 'catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate'; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4175205..4176146) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117012.1 CDS hslU NC_011094.1 4176201 4177532 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(4176201..4177532) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117013.1 CDS hslV NC_011094.1 4177542 4178072 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4177542..4178072) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117014.1 CDS ftsN NC_011094.1 4178164 4179168 R identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; cell division protein FtsN complement(4178164..4179168) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117015.1 CDS cytR NC_011094.1 4179262 4180287 R 'negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins'; DNA-binding transcriptional regulator CytR complement(4179262..4180287) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117016.1 CDS SeSA_A4311 NC_011094.1 4180442 4182640 R 'binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity'; primosome assembly protein PriA complement(4180442..4182640) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117017.1 CDS rpmE NC_011094.1 4182844 4183056 D 'RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 4182844..4183056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117018.1 CDS SeSA_A4313 NC_011094.1 4183101 4183763 R identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117; hypothetical protein complement(4183101..4183763) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117019.1 CDS SeSA_A4314 NC_011094.1 4183964 4185754 R identified by match to protein family HMM PF05935; arylsulfotransferase complement(4183964..4185754) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117020.1 CDS SeSA_A4315 NC_011094.1 4185639 4185800 D identified by glimmer; hypothetical protein 4185639..4185800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117021.1 CDS metJ NC_011094.1 4186212 4186529 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4186212..4186529) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117022.1 CDS metB NC_011094.1 4186794 4187954 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4186794..4187954 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117023.1 CDS metL NC_011094.1 4187957 4190389 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4187957..4190389 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117024.1 CDS SeSA_A4320 NC_011094.1 4190628 4190882 R hypothetical protein complement(4190628..4190882) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117025.1 CDS SeSA_A4321 NC_011094.1 4191117 4192241 R hypothetical protein complement(4191117..4192241) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117026.1 CDS SeSA_A4322 NC_011094.1 4192377 4193933 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4192377..4193933 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117027.1 CDS metF NC_011094.1 4194128 4195018 D 'MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor'; 5,10-methylenetetrahydrofolate reductase 4194128..4195018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117028.1 CDS katG NC_011094.1 4195183 4197363 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4195183..4197363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117029.1 CDS gldA NC_011094.1 4197470 4198573 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4197470..4198573) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117030.1 CDS fsaB NC_011094.1 4198585 4199247 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4198585..4199247) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117031.1 CDS SeSA_A4327 NC_011094.1 4199502 4200338 R identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein complement(4199502..4200338) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117032.1 CDS SeSA_A4328 NC_011094.1 4200499 4202232 R identified by match to protein family HMM PF00884; hypothetical protein complement(4200499..4202232) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117033.1 CDS ppc NC_011094.1 4202443 4205094 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4202443..4205094) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117034.1 CDS argE NC_011094.1 4205486 4206637 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4205486..4206637) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117035.1 CDS argC NC_011094.1 4206726 4207730 D 'catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate'; N-acetyl-gamma-glutamyl-phosphate reductase 4206726..4207730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117036.1 CDS argB NC_011094.1 4207741 4208514 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4207741..4208514 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117037.1 CDS argH NC_011094.1 4208632 4210008 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4208632..4210008 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117038.1 CDS oxyR NC_011094.1 4210292 4211209 D 'Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA'; DNA-binding transcriptional regulator OxyR 4210292..4211209 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117039.1 CDS sthA NC_011094.1 4211192 4212604 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4211192..4212604) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119812.1 CDS fabR NC_011094.1 4212794 4213426 D fatty acid biosynthesis regulator 4212794..4213426 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117040.1 CDS SeSA_A4338 NC_011094.1 4213442 4213801 D identified by match to protein family HMM PF07226; hypothetical protein 4213442..4213801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117041.1 CDS trmA NC_011094.1 4213848 4214948 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4213848..4214948) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117042.1 CDS btuB NC_011094.1 4215322 4217166 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4215322..4217166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117043.2 CDS murI NC_011094.1 4217111 4217962 D 'converts L-glutamate to D-glutamate, a component of peptidoglycan'; glutamate racemase 4217111..4217962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117044.1 CDS SeSA_A4346 NC_011094.1 4222235 4222354 D hypothetical protein 4222235..4222354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117045.1 CDS murB NC_011094.1 4224000 4225028 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4224000..4225028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117046.1 CDS SeSA_A4349 NC_011094.1 4225025 4225987 D 'catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon'; biotin--protein ligase 4225025..4225987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117047.1 CDS coaA NC_011094.1 4226022 4226972 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4226022..4226972) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117048.1 CDS SeSA_A4353 NC_011094.1 4227557 4227673 D hypothetical protein 4227557..4227673 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117049.1 CDS tuf1 NC_011094.1 4227931 4229115 D 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 4227931..4229115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117050.1 CDS secE NC_011094.1 4229345 4229728 D 'forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force'; preprotein translocase subunit SecE 4229345..4229728 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117051.1 CDS nusG NC_011094.1 4229730 4230275 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4229730..4230275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117052.1 CDS rplK NC_011094.1 4230433 4230861 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4230433..4230861 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117053.1 CDS rplA NC_011094.1 4230865 4231569 D 'in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA'; 50S ribosomal protein L1 4230865..4231569 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117054.1 CDS rplJ NC_011094.1 4231985 4232482 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4231985..4232482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117055.1 CDS rplL NC_011094.1 4232549 4232914 D 'present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors'; 50S ribosomal protein L7/L12 4232549..4232914 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117056.1 CDS rpoB NC_011094.1 4233232 4237260 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4233232..4237260 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117057.1 CDS rpoC NC_011094.1 4237337 4241560 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4237337..4241560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117058.1 CDS SeSA_A4366 NC_011094.1 4241647 4241928 D hypothetical protein 4241647..4241928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117059.1 CDS SeSA_A4368 NC_011094.1 4242594 4242722 R integrase, catalytic region complement(4242594..4242722) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117060.1 CDS thiH NC_011094.1 4243024 4244157 R 'in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center'; thiamine biosynthesis protein ThiH complement(4243024..4244157) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117061.1 CDS thiG NC_011094.1 4244154 4244924 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4244154..4244924) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117062.1 CDS thiS NC_011094.1 4244926 4245126 R 'with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate'; sulfur carrier protein ThiS complement(4244926..4245126) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117063.1 CDS SeSA_A4372 NC_011094.1 4245107 4245865 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; adenylyltransferase complement(4245107..4245865) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117064.1 CDS thiE NC_011094.1 4245858 4246493 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4245858..4246493) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117065.1 CDS thiC NC_011094.1 4246493 4248388 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4246493..4248388) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117066.1 CDS SeSA_A4376 NC_011094.1 4248752 4249240 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4248752..4249240) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117067.1 CDS nudC NC_011094.1 4249333 4250106 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4249333..4250106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117068.1 CDS hemE NC_011094.1 4250147 4251211 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4250147..4251211 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117069.1 CDS nfi NC_011094.1 4251221 4251892 D 'Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures'; endonuclease V 4251221..4251892 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117070.1 CDS SeSA_A4380 NC_011094.1 4251934 4252524 D identified by match to protein family HMM PF04222; hypothetical protein 4251934..4252524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117071.1 CDS hupA NC_011094.1 4252711 4252983 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4252711..4252983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117072.1 CDS SeSA_A4382 NC_011094.1 4252995 4253687 D identified by match to protein family HMM PF07356; hypothetical protein 4252995..4253687 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117073.1 CDS zraP NC_011094.1 4253729 4254184 R zinc resistance protein complement(4253729..4254184) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117074.1 CDS SeSA_A4384 NC_011094.1 4254438 4255835 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4254438..4255835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117075.1 CDS SeSA_A4385 NC_011094.1 4255841 4257166 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4255841..4257166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117076.1 CDS purD NC_011094.1 4257163 4258452 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4257163..4258452) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117077.1 CDS purH NC_011094.1 4258468 4260057 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4258468..4260057) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117078.1 CDS SeSA_A4390 NC_011094.1 4264405 4264524 D hypothetical protein 4264405..4264524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117079.1 CDS SeSA_A4392 NC_011094.1 4266219 4266656 R identified by match to protein family HMM PF00583; hypothetical protein complement(4266219..4266656) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117080.1 CDS metA NC_011094.1 4266813 4267742 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4266813..4267742 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117081.1 CDS aceB NC_011094.1 4268008 4269612 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4268008..4269612 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117082.1 CDS aceA NC_011094.1 4269644 4270948 D identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4269644..4270948 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117083.1 CDS SeSA_A4396 NC_011094.1 4270952 4271074 D hypothetical protein 4270952..4271074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117084.1 CDS aceK NC_011094.1 4271050 4272801 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4271050..4272801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117085.1 CDS SeSA_A4398 NC_011094.1 4272765 4273199 R identified by match to protein family HMM PF04266; hypothetical protein complement(4272765..4273199) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117086.1 CDS SeSA_A4399 NC_011094.1 4273183 4274007 R 'regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase'; IclR family transcriptional regulator complement(4273183..4274007) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117087.1 CDS SeSA_A4400 NC_011094.1 4274131 4274265 R identified by glimmer; hypothetical protein complement(4274131..4274265) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117088.1 CDS metH NC_011094.1 4274314 4277997 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4274314..4277997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117089.1 CDS SeSA_A4402 NC_011094.1 4278264 4279895 D identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4278264..4279895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117090.1 CDS SeSA_A4403 NC_011094.1 4279971 4280660 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4279971..4280660) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117091.1 CDS SeSA_A4404 NC_011094.1 4280868 4281407 D nucleoprotein/polynucleotide-associated enzyme 4280868..4281407 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117092.1 CDS SeSA_A4405 NC_011094.1 4281454 4282323 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4281454..4282323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117093.1 CDS SeSA_A4406 NC_011094.1 4282320 4282592 R hypothetical protein complement(4282320..4282592) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117094.1 CDS SeSA_A4407 NC_011094.1 4282803 4283561 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family regulatory protein complement(4282803..4283561) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117095.1 CDS SeSA_A4408 NC_011094.1 4283548 4284411 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(4283548..4284411) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117096.1 CDS SeSA_A4409 NC_011094.1 4284428 4285267 R hypothetical protein complement(4284428..4285267) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117097.1 CDS SeSA_A4410 NC_011094.1 4285291 4286880 R hypothetical protein complement(4285291..4286880) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117098.1 CDS lysC NC_011094.1 4287258 4288607 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase complement(4287258..4288607) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117099.1 CDS pgi NC_011094.1 4288995 4290644 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4288995..4290644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117100.1 CDS SeSA_A4413 NC_011094.1 4291085 4291330 D hypothetical protein 4291085..4291330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117101.1 CDS SeSA_A4414 NC_011094.1 4291394 4292032 D hypothetical protein 4291394..4292032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117102.1 CDS SeSA_A4415 NC_011094.1 4292029 4292766 D identified by match to protein family HMM PF06251; hypothetical protein 4292029..4292766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117103.1 CDS SeSA_A4416 NC_011094.1 4292766 4294862 D identified by match to protein family HMM PF06082; lipoprotein 4292766..4294862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117104.1 CDS SeSA_A4417 NC_011094.1 4295005 4295415 D identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4295005..4295415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117105.1 CDS xylE NC_011094.1 4295461 4296936 R xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter; D-xylose transporter XylE complement(4295461..4296936) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117106.1 CDS malG NC_011094.1 4297256 4298146 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(4297256..4298146) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117107.1 CDS malF NC_011094.1 4298161 4299705 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4298161..4299705) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117108.1 CDS malE NC_011094.1 4299837 4301027 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein complement(4299837..4301027) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117109.1 CDS malK NC_011094.1 4301389 4302498 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4301389..4302498 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117110.1 CDS lamB NC_011094.1 4302587 4303945 D porin involved in the transport of maltose and maltodextrins; maltoporin 4302587..4303945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117111.1 CDS malM NC_011094.1 4304109 4305026 D identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4304109..4305026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117112.1 CDS ubiC NC_011094.1 4305207 4305704 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4305207..4305704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117113.1 CDS ubiA NC_011094.1 4305718 4306590 D 'catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway'; 4-hydroxybenzoate octaprenyltransferase 4305718..4306590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117114.1 CDS SeSA_A4427 NC_011094.1 4306689 4309109 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4306689..4309109) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117115.1 CDS dgkA NC_011094.1 4309280 4309648 D identified by match to protein family HMM PF01219; diacylglycerol kinase 4309280..4309648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117116.1 CDS lexA NC_011094.1 4309757 4310365 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4309757..4310365 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117117.1 CDS SeSA_A4430 NC_011094.1 4310543 4311868 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4310543..4311868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117118.1 CDS SeSA_A4431 NC_011094.1 4311850 4311978 D hypothetical protein 4311850..4311978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117119.1 CDS SeSA_A4432 NC_011094.1 4312000 4312209 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4312000..4312209 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117120.1 CDS SeSA_A4433 NC_011094.1 4312309 4312824 R 'Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB'; zinc uptake transcriptional repressor complement(4312309..4312824) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117121.1 CDS SeSA_A4434 NC_011094.1 4313071 4314381 D conjugative transfer protein 4313071..4314381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117122.1 CDS SeSA_A4435 NC_011094.1 4314690 4315223 D hypothetical protein 4314690..4315223 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117123.1 CDS SeSA_A4436 NC_011094.1 4315417 4315590 D hypothetical protein 4315417..4315590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117124.1 CDS SeSA_A4437 NC_011094.1 4316061 4316429 R Eaa2 complement(4316061..4316429) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117125.1 CDS SeSA_A4438 NC_011094.1 4316426 4316719 R Gp43 complement(4316426..4316719) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117126.1 CDS SeSA_A4439 NC_011094.1 4316761 4316973 R hypothetical protein complement(4316761..4316973) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117127.1 CDS SeSA_A4440 NC_011094.1 4317067 4317768 R identified by glimmer; hypothetical protein complement(4317067..4317768) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117128.1 CDS SeSA_A4441 NC_011094.1 4317839 4318378 R hypothetical protein complement(4317839..4318378) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117129.1 CDS SeSA_A4442 NC_011094.1 4318515 4319342 R hypothetical protein complement(4318515..4319342) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117130.1 CDS SeSA_A4443 NC_011094.1 4319400 4319771 R hypothetical protein complement(4319400..4319771) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117131.1 CDS SeSA_A4444 NC_011094.1 4321769 4321969 D hypothetical protein 4321769..4321969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117132.1 CDS SeSA_A4445 NC_011094.1 4322007 4322558 D hypothetical protein 4322007..4322558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117133.1 CDS SeSA_A4446 NC_011094.1 4322903 4323844 D phage O protein family protein 4322903..4323844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117134.1 CDS SeSA_A4447 NC_011094.1 4323939 4324592 D identified by match to protein family HMM PF05869; match to protein family HMM TIGR01712; phage N-6-adenine-methyltransferase 4323939..4324592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117135.1 CDS lexA NC_011094.1 4324589 4324915 D identified by match to protein family HMM PF01726; lexA DNA binding domain-containing protein 4324589..4324915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117136.1 CDS SeSA_A4449 NC_011094.1 4324912 4325301 D identified by match to protein family HMM PF05866; bacteriophage V crossover junction endodeoxyribonuclease 4324912..4325301 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117137.1 CDS SeSA_A4450 NC_011094.1 4325321 4326118 D identified by match to protein family HMM PF04383; KilA-N domain family protein 4325321..4326118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117138.1 CDS SeSA_A4451 NC_011094.1 4326126 4327115 D identified by match to protein family HMM PF06914; hypothetical protein 4326126..4327115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117139.1 CDS SeSA_A4452 NC_011094.1 4327129 4327881 D identified by match to protein family HMM PF03589; antitermination protein 4327129..4327881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117140.1 CDS SeSA_A4453 NC_011094.1 4328317 4328430 R identified by glimmer; hypothetical protein complement(4328317..4328430) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117141.1 CDS SeSA_A4454 NC_011094.1 4328560 4328748 D identified by glimmer; hypothetical protein 4328560..4328748 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117142.1 CDS SeSA_A4455 NC_011094.1 4328883 4329227 D prophage membrane protein 4328883..4329227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117143.1 CDS SeSA_A4456 NC_011094.1 4329214 4329495 D identified by match to protein family HMM PF05449; prophage membrane protein 4329214..4329495 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117144.1 CDS SeSA_A4457 NC_011094.1 4329495 4330109 D lytic enzyme 4329495..4330109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117145.1 CDS SeSA_A4458 NC_011094.1 4330106 4330648 D protein gp55 4330106..4330648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117146.1 CDS SeSA_A4459 NC_011094.1 4330751 4331254 D hypothetical protein 4330751..4331254 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117147.1 CDS SeSA_A4460 NC_011094.1 4331289 4331666 D Gp74 4331289..4331666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117148.1 CDS SeSA_A4461 NC_011094.1 4331799 4332263 D identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase, small subunit, P27 family protein 4331799..4332263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117149.1 CDS SeSA_A4462 NC_011094.1 4332283 4333959 D identified by match to protein family HMM PF03354; phage terminase, large subunit 4332283..4333959 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117150.1 CDS SeSA_A4463 NC_011094.1 4333959 4335263 D identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family protein 4333959..4335263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117151.1 CDS SeSA_A4464 NC_011094.1 4335277 4336125 D identified by match to protein family HMM PF00574; ClpP protease 4335277..4336125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117152.1 CDS SeSA_A4465 NC_011094.1 4336135 4337352 D identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family protein 4336135..4337352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117153.1 CDS SeSA_A4466 NC_011094.1 4337396 4337665 D hypothetical protein 4337396..4337665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117154.1 CDS SeSA_A4467 NC_011094.1 4337665 4337988 D phage protein 4337665..4337988 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117155.1 CDS SeSA_A4468 NC_011094.1 4338000 4338413 D identified by match to protein family HMM TIGR01563; phage head-tail adaptor 4338000..4338413 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117156.1 CDS SeSA_A4469 NC_011094.1 4338385 4338897 D hypothetical protein 4338385..4338897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117157.1 CDS SeSA_A4470 NC_011094.1 4338894 4339439 D hypothetical protein 4338894..4339439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117158.1 CDS SeSA_A4471 NC_011094.1 4339461 4339625 D hypothetical protein 4339461..4339625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117159.1 CDS SeSA_A4472 NC_011094.1 4339615 4341111 D identified by match to protein family HMM PF06274; bacteriophage Mu tail sheath protein 4339615..4341111 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117160.1 CDS SeSA_A4473 NC_011094.1 4341111 4341467 D tail tube protein 4341111..4341467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117161.1 CDS SeSA_A4474 NC_011094.1 4341464 4341790 D hypothetical protein 4341464..4341790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117162.1 CDS SeSA_A4475 NC_011094.1 4341875 4343800 D identified by match to protein family HMM TIGR01760; tail protein 4341875..4343800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117163.1 CDS SeSA_A4476 NC_011094.1 4344072 4344266 D hypothetical protein 4344072..4344266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117164.1 CDS SeSA_A4477 NC_011094.1 4344326 4345666 D identified by match to protein family HMM PF07157; tail/DNA circulation protein 4344326..4345666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117165.1 CDS SeSA_A4478 NC_011094.1 4345663 4346721 D identified by match to protein family HMM PF06893; bacteriophage Mu P protein 4345663..4346721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117166.1 CDS SeSA_A4479 NC_011094.1 4346721 4347254 D identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644; bacteriophage Mu Gp45 protein 4346721..4347254 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117167.1 CDS SeSA_A4480 NC_011094.1 4347259 4347672 D identified by match to protein family HMM PF07409; phage protein GP46 4347259..4347672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117168.1 CDS SeSA_A4481 NC_011094.1 4347665 4348744 D identified by match to protein family HMM PF04865; tail protein 4347665..4348744 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117169.1 CDS SeSA_A4482 NC_011094.1 4348747 4349334 D tail protein 4348747..4349334 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117170.1 CDS SeSA_A4483 NC_011094.1 4349321 4350415 D phage tail fiber protein 4349321..4350415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117171.1 CDS SeSA_A4484 NC_011094.1 4350422 4350829 D identified by match to protein family HMM PF02413; fels-2 prophage Tfa 4350422..4350829 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117172.1 CDS SeSA_A4485 NC_011094.1 4351026 4351748 R identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE complement(4351026..4351748) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117173.1 CDS SeSA_A4486 NC_011094.1 4352084 4352221 D identified by glimmer; hypothetical protein 4352084..4352221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117174.1 CDS SeSA_A4488 NC_011094.1 4352273 4352836 D identified by match to protein family HMM PF02796; DNA-invertase 4352273..4352836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117175.1 CDS SeSA_A4489 NC_011094.1 4352980 4353228 R identified by match to protein family HMM PF06183; DNA-damage-inducible protein complement(4352980..4353228) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117176.1 CDS SeSA_A4490 NC_011094.1 4353290 4354387 R identified by match to protein family HMM PF00589; phage integrase family protein complement(4353290..4354387) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117177.1 CDS SeSA_A4491 NC_011094.1 4354476 4355513 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4354476..4355513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119813.1 CDS pspG NC_011094.1 4355681 4355923 D phage shock protein G 4355681..4355923 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117178.1 CDS SeSA_A4493 NC_011094.1 4356098 4357081 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase, NADPH-dependent complement(4356098..4357081) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117179.1 CDS dnaB NC_011094.1 4357146 4358561 D unwinds double stranded DNA; replicative DNA helicase 4357146..4358561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117180.1 CDS alr NC_011094.1 4358593 4359672 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4358593..4359672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117181.1 CDS SeSA_A4496 NC_011094.1 4359629 4359778 R identified by glimmer; hypothetical protein complement(4359629..4359778) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117182.1 CDS SeSA_A4497 NC_011094.1 4359858 4361051 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4359858..4361051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117183.1 CDS aphA NC_011094.1 4361238 4361951 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4361238..4361951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117184.1 CDS SeSA_A4499 NC_011094.1 4362080 4362496 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4362080..4362496 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117185.1 CDS SeSA_A4500 NC_011094.1 4362499 4362855 D identified by match to protein family HMM PF04237; hypothetical protein 4362499..4362855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117186.1 CDS SeSA_A4501 NC_011094.1 4362856 4363194 R hypothetical protein complement(4362856..4363194) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117187.1 CDS SeSA_A4502 NC_011094.1 4363181 4363624 R hypothetical protein complement(4363181..4363624) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117188.1 CDS uvrA NC_011094.1 4363768 4366593 R 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate'; excinuclease ABC subunit A complement(4363768..4366593) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117189.1 CDS ssb2 NC_011094.1 4366841 4367371 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4366841..4367371 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117190.1 CDS SeSA_A4505 NC_011094.1 4367519 4367644 D identified by glimmer; hypothetical protein 4367519..4367644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117191.1 CDS SeSA_A4506 NC_011094.1 4367762 4367902 D identified by glimmer; hypothetical protein 4367762..4367902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117192.1 CDS SeSA_A4507 NC_011094.1 4368411 4369043 D hypothetical protein 4368411..4369043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117193.1 CDS SeSA_A4508 NC_011094.1 4369040 4370428 D integral membrane protein 4369040..4370428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117194.1 CDS SeSA_A4509 NC_011094.1 4370811 4371737 D identified by match to protein family HMM PF02321; ABC transporter outer membrane protein 4370811..4371737 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117195.1 CDS SeSA_A4512 NC_011094.1 4373028 4389713 D hypothetical protein 4373028..4389713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117196.1 CDS SeSA_A4513 NC_011094.1 4389753 4391819 D identified by match to protein family HMM PF00005; type-1 secretion protein 4389753..4391819 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117197.1 CDS SeSA_A4515 NC_011094.1 4392941 4394542 D identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4392941..4394542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117198.1 CDS SeSA_A4516 NC_011094.1 4394530 4394853 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4394530..4394853) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117199.1 CDS soxR NC_011094.1 4394940 4395398 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4394940..4395398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117200.1 CDS SeSA_A4518 NC_011094.1 4395691 4396359 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 4395691..4396359 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117201.1 CDS SeSA_A4519 NC_011094.1 4396340 4396561 R identified by glimmer; hypothetical protein complement(4396340..4396561) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117202.1 CDS SeSA_A4520 NC_011094.1 4396707 4398056 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter sulfate permease (SulP) family protein 4396707..4398056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117203.1 CDS SeSA_A4522 NC_011094.1 4398049 4398207 R identified by glimmer; hypothetical protein complement(4398049..4398207) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117204.1 CDS SeSA_A4521 NC_011094.1 4398206 4399852 D identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4398206..4399852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117205.1 CDS SeSA_A4523 NC_011094.1 4399947 4400834 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein complement(4399947..4400834) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117206.2 CDS SeSA_A4524 NC_011094.1 4400833 4401348 D identified by match to protein family HMM PF03788; LrgA family protein 4400833..4401348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117207.1 CDS SeSA_A4525 NC_011094.1 4401341 4402030 D identified by match to protein family HMM PF04172; LrgB family protein 4401341..4402030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117208.1 CDS actP NC_011094.1 4402069 4403718 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4402069..4403718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117209.1 CDS SeSA_A4527 NC_011094.1 4403715 4404029 R identified by match to protein family HMM PF04341; hypothetical protein complement(4403715..4404029) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117210.1 CDS acsA NC_011094.1 4404269 4406227 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4404269..4406227) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117211.1 CDS nrfA NC_011094.1 4406659 4408095 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4406659..4408095 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117212.1 CDS nrfB NC_011094.1 4408207 4408773 D 'part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia'; cytochrome c nitrite reductase pentaheme subunit 4408207..4408773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117213.1 CDS nrfC NC_011094.1 4408770 4409441 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase, Fe-S protein 4408770..4409441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117214.1 CDS nrfD NC_011094.1 4409438 4410394 D identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase, NrfD subunit 4409438..4410394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117215.1 CDS ccmF NC_011094.1 4410387 4412123 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4410387..4412123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117216.1 CDS SeSA_A4534 NC_011094.1 4412116 4412625 D identified by match to protein family HMM PF03918; match to protein family HMM TIGR03147; formate-dependent nitrite reductase complex subunit NrfF 4412116..4412625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117217.1 CDS SeSA_A4535 NC_011094.1 4412622 4413242 D identified by match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4412622..4413242 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117218.1 CDS SeSA_A4536 NC_011094.1 4413382 4413510 R hypothetical protein complement(4413382..4413510) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117219.1 CDS gltP NC_011094.1 4413587 4414897 D 'carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system'; glutamate/aspartate:proton symporter 4413587..4414897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117220.1 CDS SeSA_A4538 NC_011094.1 4415055 4415744 R identified by match to protein family HMM PF08238; hypothetical protein complement(4415055..4415744) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117221.1 CDS SeSA_A4541 NC_011094.1 4418440 4419348 R identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase complement(4418440..4419348) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117222.1 CDS SeSA_A4542 NC_011094.1 4419606 4420040 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4419606..4420040) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117223.1 CDS SeSA_A4543 NC_011094.1 4420192 4420635 R identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein complement(4420192..4420635) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117224.1 CDS phnA NC_011094.1 4420755 4421090 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein complement(4420755..4421090) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117225.1 CDS SeSA_A4545 NC_011094.1 4421558 4423060 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883; proline/glycine betaine transporter 4421558..4423060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117226.1 CDS SeSA_A4546 NC_011094.1 4423227 4424306 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB complement(4423227..4424306) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117227.1 CDS SeSA_A4547 NC_011094.1 4424307 4424975 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4424307..4424975) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117228.1 CDS SeSA_A4548 NC_011094.1 4424972 4426615 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein complement(4424972..4426615) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117229.1 CDS SeSA_A4549 NC_011094.1 4426749 4428086 R identified by match to protein family HMM PF00324; arginine:agmatin antiporter complement(4426749..4428086) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117230.1 CDS SeSA_A4550 NC_011094.1 4428226 4428957 R identified by match to protein family HMM PF00165; porin complement(4428226..4428957) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117231.1 CDS adiA NC_011094.1 4429285 4431555 R identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase complement(4429285..4431555) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117232.1 CDS SeSA_A4552 NC_011094.1 4431785 4432675 R identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR complement(4431785..4432675) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117233.1 CDS SeSA_A4553 NC_011094.1 4432986 4434341 D identified by match to protein family HMM PF02056; alpha-galactosidase 4432986..4434341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117234.1 CDS SeSA_A4554 NC_011094.1 4434425 4435855 D identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4434425..4435855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117235.1 CDS SeSA_A4555 NC_011094.1 4435944 4437590 R identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic complement(4435944..4437590) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117236.1 CDS SeSA_A4556 NC_011094.1 4437686 4439026 R 'functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters'; anaerobic C4-dicarboxylate transporter complement(4437686..4439026) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117237.1 CDS SeSA_A4557 NC_011094.1 4439173 4439439 R hypothetical protein complement(4439173..4439439) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117238.1 CDS SeSA_A4558 NC_011094.1 4439756 4440475 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4439756..4440475) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117239.1 CDS SeSA_A4559 NC_011094.1 4440472 4442103 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4440472..4442103) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117240.1 CDS SeSA_A4560 NC_011094.1 4442478 4444907 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 4442478..4444907 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117241.1 CDS dmsB NC_011094.1 4444921 4445547 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 4444921..4445547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117242.1 CDS dmsC NC_011094.1 4445540 4446313 D identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4445540..4446313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_007443076.1 CDS SeSA_A4563 NC_011094.1 4446329 4446982 D oxidoreductase 4446329..4446982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117243.1 CDS SeSA_A4564 NC_011094.1 4447066 4448466 R identified by match to protein family HMM PF09362; hypothetical protein complement(4447066..4448466) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117244.1 CDS SeSA_A4565 NC_011094.1 4448492 4448605 D identified by glimmer; hypothetical protein 4448492..4448605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117245.1 CDS SeSA_A4566 NC_011094.1 4448770 4449675 D identified by match to protein family HMM PF06977; hypothetical protein 4448770..4449675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117246.1 CDS SeSA_A4568 NC_011094.1 4450333 4450515 D identified by glimmer; hypothetical protein 4450333..4450515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117247.1 CDS SeSA_A4569 NC_011094.1 4450508 4450780 R identified by match to protein family HMM PF00196; GerE family regulatory protein complement(4450508..4450780) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117248.1 CDS SeSA_A4570 NC_011094.1 4450792 4451667 R identified by match to protein family HMM PF00165; araC family transcriptional regulator complement(4450792..4451667) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117249.1 CDS SeSA_A4571 NC_011094.1 4451804 4451929 D identified by glimmer; hypothetical protein 4451804..4451929 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117250.1 CDS SeSA_A4572 NC_011094.1 4452470 4452763 D identified by match to protein family HMM PF08681; hypothetical protein 4452470..4452763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117251.1 CDS SeSA_A4573 NC_011094.1 4452760 4453251 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 4452760..4453251 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117252.1 CDS SeSA_A4575 NC_011094.1 4453994 4454221 R identified by glimmer; hypothetical protein complement(4453994..4454221) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117253.1 CDS SeSA_A4576 NC_011094.1 4454560 4454691 D identified by glimmer; hypothetical protein 4454560..4454691 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117254.1 CDS SeSA_A4577 NC_011094.1 4454804 4455094 D identified by match to protein family HMM PF03333; PefB 4454804..4455094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117255.1 CDS SeSA_A4578 NC_011094.1 4455129 4455668 D identified by match to protein family HMM PF00419; K88 fimbrial protein A 4455129..4455668 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117256.1 CDS SeSA_A4579 NC_011094.1 4455678 4458116 D identified by match to protein family HMM PF00577; CshB porin 4455678..4458116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117257.1 CDS SeSA_A4580 NC_011094.1 4458133 4458930 D identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein ClpE 4458133..4458930 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117258.1 CDS SeSA_A4581 NC_011094.1 4458963 4459457 D K88 minor fimbrial protein FaeF 4458963..4459457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117259.1 CDS SeSA_A4582 NC_011094.1 4459680 4460462 D CshE pilin 4459680..4460462 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117260.1 CDS SeSA_A4583 NC_011094.1 4460696 4461493 D identified by match to protein family HMM PF02432; minor fimbrial protein 4460696..4461493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117261.1 CDS SeSA_A4584 NC_011094.1 4461521 4462285 D identified by match to protein family HMM PF02432; minor fimbrial protein 4461521..4462285 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117262.1 CDS SeSA_A4585 NC_011094.1 4462707 4463291 D hypothetical protein 4462707..4463291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117263.1 CDS SeSA_A4586 NC_011094.1 4463364 4463576 D identified by match to protein family HMM PF04703; hypothetical protein 4463364..4463576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117264.1 CDS SeSA_A4587 NC_011094.1 4463853 4463999 D identified by glimmer; hypothetical protein 4463853..4463999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117265.1 CDS SeSA_A4588 NC_011094.1 4464025 4464873 D identified by match to protein family HMM PF06977; SrgB 4464025..4464873 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117266.1 CDS SeSA_A4589 NC_011094.1 4465005 4465757 R identified by match to protein family HMM PF01569; acid phosphatase complement(4465005..4465757) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117267.1 CDS SeSA_A4590 NC_011094.1 4465813 4465992 D identified by glimmer; hypothetical protein 4465813..4465992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117268.1 CDS SeSA_A4592 NC_011094.1 4466658 4467233 R identified by match to protein family HMM PF00440; transcriptional regulator complement(4466658..4467233) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117269.1 CDS dipZ NC_011094.1 4467270 4468973 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(4467270..4468973) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117270.1 CDS cutA NC_011094.1 4468949 4469296 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4468949..4469296) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117271.1 CDS dcuA NC_011094.1 4469417 4470718 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4469417..4470718) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117272.1 CDS aspA NC_011094.1 4470833 4472269 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4470833..4472269) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117273.1 CDS fxsA NC_011094.1 4472610 4473086 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4472610..4473086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117274.1 CDS SeSA_A4598 NC_011094.1 4473145 4474407 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein complement(4473145..4474407) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117275.1 CDS groES NC_011094.1 4474662 4474955 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4474662..4474955 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117276.1 CDS groEL NC_011094.1 4474999 4476645 D '60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth'; molecular chaperone GroEL 4474999..4476645 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117277.1 CDS SeSA_A4601 NC_011094.1 4476889 4477242 D lipoprotein 4476889..4477242 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117278.1 CDS SeSA_A4602 NC_011094.1 4477290 4478147 R hypothetical protein complement(4477290..4478147) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117279.1 CDS SeSA_A4603 NC_011094.1 4478429 4479457 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein complement(4478429..4479457) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117280.1 CDS efp NC_011094.1 4479498 4480064 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4479498..4480064 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117281.1 CDS SeSA_A4605 NC_011094.1 4480086 4480259 D identified by match to protein family HMM PF08085; entericidin A 4480086..4480259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117282.1 CDS SeSA_A4606 NC_011094.1 4480544 4481188 R identified by match to protein family HMM PF00196; transcriptional regulator complement(4480544..4481188) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119814.1 CDS SeSA_A4608 NC_011094.1 4481387 4481704 D quaternary ammonium compound-resistance protein SugE 4481387..4481704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117284.1 CDS SeSA_A4609 NC_011094.1 4481721 4482254 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4481721..4482254) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117285.1 CDS SeSA_A4610 NC_011094.1 4482365 4482724 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4482365..4482724) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117286.1 CDS frdC NC_011094.1 4482735 4483130 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase subunit C complement(4482735..4483130) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117287.1 CDS frdB NC_011094.1 4483141 4483875 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase iron-sulfur subunit complement(4483141..4483875) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117288.1 CDS frdA NC_011094.1 4483868 4485658 R 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase flavoprotein subunit complement(4483868..4485658) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117289.1 CDS SeSA_A4614 NC_011094.1 4485981 4486958 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4485981..4486958 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117290.1 CDS SeSA_A4615 NC_011094.1 4487184 4488686 D identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4487184..4488686 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117291.1 CDS SeSA_A4616 NC_011094.1 4488748 4492074 R identified by match to protein family HMM PF00924; hypothetical protein complement(4488748..4492074) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117292.1 CDS psd NC_011094.1 4492093 4493061 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4492093..4493061) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117293.1 CDS rsgA NC_011094.1 4493153 4494205 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4493153..4494205) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117294.1 CDS SeSA_A4619 NC_011094.1 4494312 4494857 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4494312..4494857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117295.1 CDS SeSA_A4620 NC_011094.1 4494919 4495659 R identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 complement(4494919..4495659) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117296.1 CDS SeSA_A4624 NC_011094.1 4496512 4497666 R identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein complement(4496512..4497666) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117297.1 CDS SeSA_A4623 NC_011094.1 4497653 4499197 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4497653..4499197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117298.1 CDS SeSA_A4625 NC_011094.1 4499172 4499630 D possibly involved in cell wall synthesis; ATPase 4499172..4499630 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117299.1 CDS SeSA_A4626 NC_011094.1 4499647 4500966 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4499647..4500966 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117300.1 CDS mutL NC_011094.1 4500976 4502832 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4500976..4502832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117301.1 CDS miaA NC_011094.1 4502825 4503775 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4502825..4503775 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117302.1 CDS hfq NC_011094.1 4503858 4504166 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4503858..4504166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117303.1 CDS hflX NC_011094.1 4504238 4505518 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4504238..4505518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117304.1 CDS hflK NC_011094.1 4505733 4506992 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4505733..4506992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117305.1 CDS hflC NC_011094.1 4506995 4507999 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4506995..4507999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117306.2 CDS SeSA_A4633 NC_011094.1 4508078 4508275 D hypothetical protein 4508078..4508275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117307.1 CDS purA NC_011094.1 4508378 4509676 D 'catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis'; adenylosuccinate synthetase 4508378..4509676 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117308.1 CDS nsrR NC_011094.1 4509896 4510321 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4509896..4510321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117309.1 CDS rnr NC_011094.1 4510359 4512797 D '3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs'; exoribonuclease R 4510359..4512797 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117310.1 CDS SeSA_A4637 NC_011094.1 4512888 4513619 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4512888..4513619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117311.1 CDS SeSA_A4638 NC_011094.1 4513752 4514156 D hypothetical protein 4513752..4514156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119815.1 CDS SeSA_A4639 NC_011094.1 4514171 4514851 D hypothetical protein 4514171..4514851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117312.1 CDS SeSA_A4640 NC_011094.1 4514880 4515017 D identified by glimmer; hypothetical protein 4514880..4515017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117313.1 CDS SeSA_A4641 NC_011094.1 4515102 4515761 D hypothetical protein 4515102..4515761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117314.1 CDS SeSA_A4642 NC_011094.1 4515779 4516177 D identified by match to protein family HMM PF03994; hypothetical protein 4515779..4516177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117315.1 CDS SeSA_A4643 NC_011094.1 4516187 4516825 D identified by match to protein family HMM PF06693; hypothetical protein 4516187..4516825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117316.1 CDS SeSA_A4644 NC_011094.1 4516828 4517991 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 4516828..4517991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117317.1 CDS SeSA_A4645 NC_011094.1 4518076 4519698 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4518076..4519698 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117318.1 CDS SeSA_A4646 NC_011094.1 4519743 4520018 R identified by match to protein family HMM PF07338; hypothetical protein complement(4519743..4520018) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117319.1 CDS SeSA_A4647 NC_011094.1 4520149 4520451 R 'in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility'; biofilm stress and motility protein A complement(4520149..4520451) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117320.1 CDS SeSA_A4648 NC_011094.1 4520662 4521411 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4520662..4521411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117321.1 CDS SeSA_A4649 NC_011094.1 4521408 4522163 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4521408..4522163) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117322.1 CDS SeSA_A4650 NC_011094.1 4522268 4523332 R L-ascorbate 6-phosphate lactonase complement(4522268..4523332) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117323.1 CDS ulaA NC_011094.1 4523695 4525092 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4523695..4525092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117324.1 CDS ulaB NC_011094.1 4525108 4525407 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4525108..4525407 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117325.1 CDS ulaC NC_011094.1 4525422 4525886 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4525422..4525886 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117326.1 CDS ulaD NC_011094.1 4525900 4526550 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4525900..4526550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117327.1 CDS ulaE NC_011094.1 4526560 4527414 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4526560..4527414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117328.1 CDS sgaE NC_011094.1 4527414 4528100 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4527414..4528100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117329.1 CDS SeSA_A4657 NC_011094.1 4528188 4528745 D identified by match to protein family HMM PF07274; hypothetical protein 4528188..4528745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117330.1 CDS SeSA_A4658 NC_011094.1 4528798 4529073 R identified by match to protein family HMM PF07338; hypothetical protein complement(4528798..4529073) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117331.1 CDS rpsF NC_011094.1 4529460 4529855 D 'binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21'; 30S ribosomal protein S6 4529460..4529855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117332.1 CDS priB NC_011094.1 4529862 4530176 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4529862..4530176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117333.1 CDS rpsR NC_011094.1 4530181 4530408 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4530181..4530408 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117334.1 CDS rplI NC_011094.1 4530450 4530899 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4530450..4530899 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117335.1 CDS SeSA_A4663 NC_011094.1 4531047 4531973 D identified by match to protein family HMM PF00892; exported membrane protein 4531047..4531973 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117336.1 CDS SeSA_A4664 NC_011094.1 4532023 4532658 R identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A complement(4532023..4532658) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117337.1 CDS SeSA_A4665 NC_011094.1 4532878 4533498 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4532878..4533498 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117338.1 CDS cycA NC_011094.1 4533794 4535203 D 'involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine'; D-alanine/D-serine/glycine permease 4533794..4535203 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117339.1 CDS SeSA_A4667 NC_011094.1 4535315 4535977 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(4535315..4535977) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117340.1 CDS SeSA_A4668 NC_011094.1 4536080 4537045 R identified by match to protein family HMM PF00892; hypothetical protein complement(4536080..4537045) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117341.1 CDS SeSA_A4669 NC_011094.1 4537126 4537974 R identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein complement(4537126..4537974) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119816.1 CDS SeSA_A4670 NC_011094.1 4538062 4538448 D HxlR family transcriptional regulator 4538062..4538448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117342.1 CDS cpdB NC_011094.1 4538506 4540449 R 'periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate'; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(4538506..4540449) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117343.1 CDS cysQ NC_011094.1 4540717 4541457 D 'catalyzes the formation of AMP from adenosine-3',5'-bisphosphate'; adenosine-3'(2'),5'-bisphosphate nucleotidase 4540717..4541457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117344.1 CDS SeSA_A4673 NC_011094.1 4541447 4542004 R identified by match to protein family HMM PF09695; match to protein family HMM TIGR01626; hypothetical protein complement(4541447..4542004) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117345.1 CDS SeSA_A4674 NC_011094.1 4542331 4542537 D identified by match to protein family HMM PF06526; hypothetical protein 4542331..4542537 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117346.1 CDS SeSA_A4675 NC_011094.1 4542621 4543964 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter complement(4542621..4543964) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117347.1 CDS msrA NC_011094.1 4544147 4544785 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4544147..4544785) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117348.1 CDS SeSA_A4677 NC_011094.1 4544840 4544956 D identified by glimmer; hypothetical protein 4544840..4544956 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117349.1 CDS SeSA_A4678 NC_011094.1 4544998 4546731 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein, OMP85 family protein 4544998..4546731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117350.1 CDS SeSA_A4679 NC_011094.1 4546728 4550507 D identified by match to protein family HMM PF04357; hypothetical protein 4546728..4550507 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117351.1 CDS SeSA_A4680 NC_011094.1 4550510 4550854 D identified by match to protein family HMM PF06094; hypothetical protein 4550510..4550854 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117352.1 CDS SeSA_A4681 NC_011094.1 4550909 4552117 R identified by match to protein family HMM PF07690; sugar transporter complement(4550909..4552117) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117353.1 CDS SeSA_A4682 NC_011094.1 4552114 4553277 R identified by match to protein family HMM PF01979; metallo-dependent hydrolase complement(4552114..4553277) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117354.1 CDS ppa NC_011094.1 4553687 4554217 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4553687..4554217) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117355.1 CDS fbp NC_011094.1 4554444 4555442 R 'catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate'; fructose-1,6-bisphosphatase complement(4554444..4555442) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117356.1 CDS mpl NC_011094.1 4555617 4556990 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4555617..4556990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117357.1 CDS yjgA NC_011094.1 4557097 4557648 R identified by match to protein family HMM PF04751; hypothetical protein complement(4557097..4557648) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117358.1 CDS pmbA NC_011094.1 4557756 4559096 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4557756..4559096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117359.1 CDS SeSA_A4689 NC_011094.1 4559195 4559581 D identified by match to protein family HMM PF07361; soluBle cytochrome b562 4559195..4559581 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117360.1 CDS SeSA_A4691 NC_011094.1 4559868 4560197 D identified by match to protein family HMM PF00874; match to protein family HMM TIGR03582; PRD domain-containing protein 4559868..4560197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117361.1 CDS SeSA_A4692 NC_011094.1 4560208 4560570 D identified by match to protein family HMM TIGR03577; hypothetical protein 4560208..4560570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117362.1 CDS SeSA_A4693 NC_011094.1 4560570 4560872 D identified by match to protein family HMM TIGR03578; hypothetical protein 4560570..4560872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117363.1 CDS SeSA_A4694 NC_011094.1 4560895 4561671 D identified by match to protein family HMM TIGR03580; hypothetical protein 4560895..4561671 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117364.1 CDS SeSA_A4695 NC_011094.1 4561683 4562327 D identified by match to protein family HMM TIGR03579; hypothetical protein 4561683..4562327 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117365.1 CDS SeSA_A4696 NC_011094.1 4562386 4563519 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4562386..4563519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117366.1 CDS SeSA_A4697 NC_011094.1 4563503 4564621 D identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4563503..4564621 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117367.1 CDS SeSA_A4698 NC_011094.1 4564618 4565358 D identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 4564618..4565358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117368.1 CDS SeSA_A4699 NC_011094.1 4565375 4567288 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; transcriptional antiterminator, BglG 4565375..4567288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117369.1 CDS SeSA_A4700 NC_011094.1 4567366 4567608 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4567366..4567608 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117370.1 CDS SeSA_A4701 NC_011094.1 4567598 4567882 D identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4567598..4567882 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117371.1 CDS nrdG NC_011094.1 4567886 4568350 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4567886..4568350) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117372.1 CDS nrdD NC_011094.1 4568567 4570705 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4568567..4570705) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117373.1 CDS SeSA_A4704 NC_011094.1 4570910 4571080 D hypothetical protein 4570910..4571080 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117374.1 CDS treC NC_011094.1 4571114 4572766 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase complement(4571114..4572766) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117375.1 CDS treB NC_011094.1 4572816 4574234 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC complement(4572816..4574234) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117376.1 CDS treR NC_011094.1 4574372 4575319 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4574372..4575319) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117377.2 CDS mgtA NC_011094.1 4575710 4578418 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4575710..4578418 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117378.1 CDS SeSA_A4710 NC_011094.1 4578534 4578980 R identified by match to protein family HMM PF01527; transposase subfamily protein complement(4578534..4578980) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117379.1 CDS SeSA_A4711 NC_011094.1 4579055 4579441 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(4579055..4579441) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117380.1 CDS pyrI NC_011094.1 4579518 4579979 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(4579518..4579979) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117381.1 CDS pyrB NC_011094.1 4579992 4580927 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(4579992..4580927) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117382.1 CDS SeSA_A4714 NC_011094.1 4581154 4581642 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR complement(4581154..4581642) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117383.1 CDS SeSA_A4715 NC_011094.1 4581639 4581755 R identified by glimmer; hypothetical protein complement(4581639..4581755) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117384.1 CDS SeSA_A4716 NC_011094.1 4581829 4583232 R identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier complement(4581829..4583232) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117385.1 CDS SeSA_A4719 NC_011094.1 4584290 4584427 R hypothetical protein complement(4584290..4584427) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117386.1 CDS arcC NC_011094.1 4584402 4585334 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4584402..4585334) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117387.1 CDS arcA NC_011094.1 4585345 4586565 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4585345..4586565) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117388.1 CDS SeSA_A4722 NC_011094.1 4586666 4586857 D hypothetical protein 4586666..4586857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117389.1 CDS SeSA_A4723 NC_011094.1 4587241 4587693 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4587241..4587693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117390.1 CDS argF NC_011094.1 4587766 4588770 R 'catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.'; ornithine carbamoyltransferase subunit I complement(4587766..4588770) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117391.1 CDS SeSA_A4725 NC_011094.1 4588936 4589352 D identified by match to protein family HMM PF06877; hypothetical protein 4588936..4589352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117392.1 CDS SeSA_A4726 NC_011094.1 4589364 4590176 D identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4589364..4590176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117393.1 CDS SeSA_A4728 NC_011094.1 4590421 4590909 R hypothetical protein complement(4590421..4590909) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117394.1 CDS SeSA_A4729 NC_011094.1 4591016 4591519 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein complement(4591016..4591519) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117395.1 CDS SeSA_A4730 NC_011094.1 4591714 4592901 D identified by match to protein family HMM PF05987; hypothetical protein 4591714..4592901 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117396.1 CDS valS NC_011094.1 4593043 4595898 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4593043..4595898) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117397.1 CDS holC NC_011094.1 4595898 4596380 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4595898..4596380) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117398.1 CDS pepA NC_011094.1 4596478 4597989 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4596478..4597989) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117399.1 CDS SeSA_A4734 NC_011094.1 4598384 4599484 D identified by match to protein family HMM PF03739; permease 4598384..4599484 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117400.1 CDS SeSA_A4735 NC_011094.1 4599484 4600566 D identified by match to protein family HMM PF03739; hypothetical protein 4599484..4600566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117401.1 CDS SeSA_A4736 NC_011094.1 4600783 4601781 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR complement(4600783..4601781) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117402.1 CDS SeSA_A4737 NC_011094.1 4601845 4603164 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; transporter gluconate:H+ symporter (GntP) family protein complement(4601845..4603164) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117403.1 CDS SeSA_A4738 NC_011094.1 4603226 4603990 R 'Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate'; gluconate 5-dehydrogenase complement(4603226..4603990) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117404.1 CDS SeSA_A4739 NC_011094.1 4604015 4605046 R NAD-binding; L-idonate 5-dehydrogenase complement(4604015..4605046) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117405.1 CDS idnK NC_011094.1 4605263 4605793 D identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4605263..4605793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117406.1 CDS SeSA_A4741 NC_011094.1 4605821 4606840 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein complement(4605821..4606840) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117407.1 CDS SeSA_A4743 NC_011094.1 4607727 4607849 D transcriptional regulator, CopG family protein 4607727..4607849 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117408.1 CDS SeSA_A4744 NC_011094.1 4607958 4608197 D identified by match to protein family HMM PF07362; hypothetical protein 4607958..4608197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117409.1 CDS SeSA_A4745 NC_011094.1 4608200 4608508 D identified by match to protein family HMM PF01845; cytotoxic protein CcdB 4608200..4608508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117410.1 CDS SeSA_A4746 NC_011094.1 4609593 4613108 D identified by match to protein family HMM PF00614; superfamily I DNA helicase 4609593..4613108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117411.1 CDS SeSA_A4747 NC_011094.1 4613401 4614825 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase 4613401..4614825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117412.1 CDS SeSA_A4748 NC_011094.1 4614868 4616076 R identified by match to protein family HMM PF09019; match to protein family HMM PF09217; type II restriction enzyme EcoRII complement(4614868..4616076) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117413.1 CDS SeSA_A4749 NC_011094.1 4616200 4616433 R hypothetical protein complement(4616200..4616433) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117414.1 CDS SeSA_A4750 NC_011094.1 4616937 4617653 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(4616937..4617653) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117415.1 CDS SeSA_A4751 NC_011094.1 4617751 4617882 D identified by glimmer; hypothetical protein 4617751..4617882 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117416.1 CDS SeSA_A4752 NC_011094.1 4618213 4619838 R identified by match to protein family HMM PF05175; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242; methionine biosynthesis protein MetW complement(4618213..4619838) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117417.1 CDS SeSA_A4753 NC_011094.1 4619849 4620106 R hypothetical protein complement(4619849..4620106) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117418.1 CDS SeSA_A4754 NC_011094.1 4620349 4620540 R identified by glimmer; hypothetical protein complement(4620349..4620540) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117419.1 CDS SeSA_A4755 NC_011094.1 4620594 4621202 D identified by match to protein family HMM PF06353; hypothetical protein 4620594..4621202 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117420.1 CDS SeSA_A4756 NC_011094.1 4621554 4622465 D hypothetical protein 4621554..4622465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117421.1 CDS SeSA_A4758 NC_011094.1 4622504 4622644 R identified by glimmer; hypothetical protein complement(4622504..4622644) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117422.1 CDS SeSA_A4757 NC_011094.1 4622643 4622771 D identified by glimmer; hypothetical protein 4622643..4622771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117423.1 CDS SeSA_A4759 NC_011094.1 4622764 4623132 D identified by match to protein family HMM PF03625; hypothetical protein 4622764..4623132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117424.1 CDS SeSA_A4760 NC_011094.1 4623129 4623803 R identified by match to protein family HMM PF01738; dienelactone hydrolase complement(4623129..4623803) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117425.1 CDS SeSA_A4761 NC_011094.1 4624153 4624926 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4624153..4624926 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117426.1 CDS trpS NC_011094.1 4624927 4625940 R 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase II complement(4624927..4625940) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117427.1 CDS SeSA_A4763 NC_011094.1 4626237 4626389 D hypothetical protein 4626237..4626389 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117428.2 CDS SeSA_A4764 NC_011094.1 4626658 4627188 D identified by match to protein family HMM PF05638; hypothetical protein 4626658..4627188 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117429.1 CDS SeSA_A4765 NC_011094.1 4627222 4627344 D identified by glimmer; hypothetical protein 4627222..4627344 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117430.1 CDS SeSA_A4766 NC_011094.1 4627427 4628161 D identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4627427..4628161 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117431.1 CDS SeSA_A4767 NC_011094.1 4628167 4629075 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator complement(4628167..4629075) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117432.1 CDS iadA NC_011094.1 4629194 4630366 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase complement(4629194..4630366) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117433.1 CDS SeSA_A4769 NC_011094.1 4630379 4630840 R identified by match to protein family HMM PF07670; hypothetical protein complement(4630379..4630840) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117434.1 CDS SeSA_A4770 NC_011094.1 4630837 4631508 R identified by match to protein family HMM PF07670; transporter gate domain-containing protein complement(4630837..4631508) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117435.1 CDS SeSA_A4771 NC_011094.1 4631691 4631819 D identified by glimmer; hypothetical protein 4631691..4631819 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117436.1 CDS SeSA_A4772 NC_011094.1 4632380 4633564 R identified by match to protein family HMM PF06779; match to protein family HMM PF07690; transporter major facilitator family protein complement(4632380..4633564) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117437.1 CDS SeSA_A4773 NC_011094.1 4633784 4635055 R identified by match to protein family HMM PF04286; hypothetical protein complement(4633784..4635055) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117438.1 CDS SeSA_A4774 NC_011094.1 4635142 4636383 R identified by match to protein family HMM PF07690; multidrug resistance protein MdtM complement(4635142..4636383) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117439.1 CDS SeSA_A4775 NC_011094.1 4636440 4636583 R identified by glimmer; hypothetical protein complement(4636440..4636583) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117440.1 CDS SeSA_A4776 NC_011094.1 4636862 4637815 D identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 4636862..4637815 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117441.1 CDS SeSA_A4777 NC_011094.1 4637812 4637925 R identified by glimmer; hypothetical protein complement(4637812..4637925) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117442.1 CDS SeSA_A4778 NC_011094.1 4637996 4639366 D identified by match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase 4637996..4639366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117443.1 CDS SeSA_A4779 NC_011094.1 4639571 4639735 D identified by match to protein family HMM PF06568; hypothetical protein 4639571..4639735 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117444.1 CDS SeSA_A4780 NC_011094.1 4639812 4640732 R transporter complement(4639812..4640732) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117445.1 CDS SeSA_A4781 NC_011094.1 4641143 4641784 R identified by match to protein family HMM PF01810; transporter LysE family protein complement(4641143..4641784) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117446.1 CDS SeSA_A4782 NC_011094.1 4641832 4642647 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; negative transcriptional regulator of cel operon complement(4641832..4642647) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117447.1 CDS SeSA_A4783 NC_011094.1 4642684 4643640 R identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA complement(4642684..4643640) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117448.1 CDS SeSA_A4784 NC_011094.1 4643651 4643854 R identified by match to protein family HMM PF04328; hypothetical protein complement(4643651..4643854) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117449.1 CDS SeSA_A4785 NC_011094.1 4643949 4646099 R identified by match to protein family HMM PF02554; carbon starvation family protein complement(4643949..4646099) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117450.1 CDS SeSA_A4786 NC_011094.1 4646466 4648127 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4646466..4648127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117451.1 CDS SeSA_A4787 NC_011094.1 4648239 4648388 R hypothetical protein complement(4648239..4648388) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117452.1 CDS SeSA_A4788 NC_011094.1 4648450 4651215 D identified by match to protein family HMM PF00158; match to protein family HMM PF00874; sigma-54 dependent DNA-binding response regulator 4648450..4651215 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117453.1 CDS SeSA_A4789 NC_011094.1 4651317 4651739 D identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4651317..4651739 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117454.1 CDS SeSA_A4790 NC_011094.1 4651754 4652215 D identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4651754..4652215 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117455.1 CDS SeSA_A4791 NC_011094.1 4652241 4653020 D identified by match to protein family HMM PF03609; phosphotransferase enzyme II C component 4652241..4653020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117456.1 CDS SeSA_A4792 NC_011094.1 4652998 4653846 D identified by match to protein family HMM PF03613; fructose permease iid component 4652998..4653846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117457.1 CDS SeSA_A4793 NC_011094.1 4653859 4654920 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4653859..4654920 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117458.1 CDS SeSA_A4794 NC_011094.1 4654938 4655948 D identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4654938..4655948 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117459.1 CDS SeSA_A4795 NC_011094.1 4656082 4658373 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4656082..4658373) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117460.1 CDS SeSA_A4796 NC_011094.1 4658656 4659147 R hypothetical protein complement(4658656..4659147) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117461.1 CDS SeSA_A4797 NC_011094.1 4659205 4659942 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4659205..4659942) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117462.1 CDS SeSA_A4798 NC_011094.1 4659945 4660484 R 'This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N''; primosomal protein DnaI complement(4659945..4660484) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117463.1 CDS SeSA_A4799 NC_011094.1 4660577 4661050 R hypothetical protein complement(4660577..4661050) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117464.1 CDS SeSA_A4800 NC_011094.1 4661041 4661985 R identified by match to protein family HMM PF06738; hypothetical protein complement(4661041..4661985) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117465.1 CDS SeSA_A4801 NC_011094.1 4663215 4663889 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4663215..4663889 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117466.1 CDS SeSA_A4802 NC_011094.1 4663940 4664398 R identified by match to protein family HMM PF04073; prolyl-tRNA synthetase complement(4663940..4664398) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117467.1 CDS SeSA_A4803 NC_011094.1 4664549 4665337 R identified by match to protein family HMM PF06276; ferric hydroximate transport ferric iron reductase complement(4664549..4665337) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117468.2 CDS SeSA_A4804 NC_011094.1 4665458 4666522 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(4665458..4666522) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117469.1 CDS SeSA_A4805 NC_011094.1 4666773 4667009 D identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4666773..4667009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117470.1 CDS rsmC NC_011094.1 4667550 4668578 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4667550..4668578) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117471.1 CDS holD NC_011094.1 4668681 4669118 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4668681..4669118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117472.2 CDS rimI NC_011094.1 4669063 4669509 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4669063..4669509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117473.1 CDS yjjG NC_011094.1 4669531 4670208 D 'manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily'; nucleotidase 4669531..4670208 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117474.1 CDS prfC NC_011094.1 4670300 4671889 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4670300..4671889 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117475.1 CDS SeSA_A4814 NC_011094.1 4672081 4672215 D identified by glimmer; hypothetical protein 4672081..4672215 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117476.1 CDS osmY NC_011094.1 4672291 4672908 D identified by match to protein family HMM PF04972; hypothetical protein 4672291..4672908 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117477.1 CDS SeSA_A4816 NC_011094.1 4673037 4673198 D identified by glimmer; hypothetical protein 4673037..4673198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117478.1 CDS SeSA_A4817 NC_011094.1 4673322 4674395 D identified by match to protein family HMM PF01734; patatin 4673322..4674395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117479.1 CDS SeSA_A4818 NC_011094.1 4674392 4675165 D identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4674392..4675165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117480.1 CDS SeSA_A4819 NC_011094.1 4675198 4676061 R identified by match to protein family HMM PF04055; pyruvate formate lyase activating enzyme complement(4675198..4676061) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117481.1 CDS SeSA_A4820 NC_011094.1 4676033 4677583 R hypothetical protein complement(4676033..4677583) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117482.1 CDS deoC NC_011094.1 4677807 4678622 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4677807..4678622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117483.1 CDS deoA NC_011094.1 4678746 4680068 D 'Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate'; thymidine phosphorylase 4678746..4680068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117484.1 CDS deoB NC_011094.1 4680120 4681343 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4680120..4681343 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117485.1 CDS deoD NC_011094.1 4681553 4682272 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4681553..4682272 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117486.1 CDS SeSA_A4825 NC_011094.1 4682479 4682970 D transposase and inactivated derivative 4682479..4682970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117487.1 CDS lplA NC_011094.1 4683055 4684071 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4683055..4684071) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117488.1 CDS SeSA_A4828 NC_011094.1 4684105 4684749 R hypothetical protein complement(4684105..4684749) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117489.1 CDS serB NC_011094.1 4684866 4685834 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4684866..4685834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117490.1 CDS radA NC_011094.1 4685918 4687300 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4685918..4687300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117491.1 CDS SeSA_A4831 NC_011094.1 4687451 4688683 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4687451..4688683 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117492.1 CDS SeSA_A4832 NC_011094.1 4688801 4690468 R 'ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence'; ABC transporter ATP-binding protein complement(4688801..4690468) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117493.1 CDS SeSA_A4833 NC_011094.1 4690677 4692614 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4690677..4692614 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117494.1 CDS trpR NC_011094.1 4692672 4692998 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4692672..4692998 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117495.1 CDS SeSA_A4835 NC_011094.1 4693100 4693615 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(4693100..4693615) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117496.1 CDS SeSA_A4836 NC_011094.1 4693664 4694311 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4693664..4694311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117497.1 CDS rob NC_011094.1 4694308 4695177 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein complement(4694308..4695177) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117498.1 CDS SeSA_A4838 NC_011094.1 4695374 4695862 D identified by match to protein family HMM PF05981; hypothetical protein 4695374..4695862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117499.1 CDS SeSA_A4839 NC_011094.1 4695875 4696564 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4695875..4696564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117500.1 CDS SeSA_A4840 NC_011094.1 4696564 4697988 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4696564..4697988 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117501.1 CDS SeSA_A4841 NC_011094.1 4698046 4699395 D identified by match to protein family HMM PF06123; hypothetical protein 4698046..4699395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117502.1 CDS SeSA_A4842 NC_011094.1 4699453 4700538 R identified by match to protein family HMM PF00419; major fimbrial protein complement(4699453..4700538) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117503.1 CDS SeSA_A4843 NC_011094.1 4700580 4701137 R identified by match to protein family HMM PF00419; fimbrial protein complement(4700580..4701137) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117504.2 CDS SeSA_A4844 NC_011094.1 4701155 4703692 R identified by match to protein family HMM PF00577; outer membrane usher protein SfmD complement(4701155..4703692) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117505.1 CDS SeSA_A4845 NC_011094.1 4703738 4704421 R identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone complement(4703738..4704421) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117506.1 CDS SeSA_A4846 NC_011094.1 4704492 4705037 R identified by match to protein family HMM PF00419; fimbrial chaperone complement(4704492..4705037) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117507.1 CDS SeSA_A4847 NC_011094.1 4705376 4706047 R hypothetical protein complement(4705376..4706047) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_008119817.1 CDS SeSA_A4848 NC_011094.1 4706432 4706746 R hypothetical protein complement(4706432..4706746) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117508.1 CDS arcA NC_011094.1 4707013 4707729 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator complement(4707013..4707729) Salmonella enterica subsp. enterica serovar Schwarzengrund str. YP_002117509.1 CDS SeSA_A4850 NC_011094.1 4708440 4709051 D member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4708440..4709051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0278 tRNA SeSA_A0278 NC_011094.1 293210 293286 D tRNA-Ile 293210..293286 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0279 tRNA SeSA_A0279 NC_011094.1 293397 293474 D tRNA-Ala 293397..293474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0284 tRNA SeSA_A0284 NC_011094.1 296833 296911 D tRNA-Asp 296833..296911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0295 tRNA SeSA_A0295 NC_011094.1 306273 306351 D tRNA-Asp 306273..306351 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0373 tRNA SeSA_A0373 NC_011094.1 379001 379076 D tRNA-Thr 379001..379076 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0599 tRNA SeSA_A0599 NC_011094.1 600609 600685 D tRNA-Arg 600609..600685 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0826 tRNA SeSA_A0826 NC_011094.1 802242 802318 R tRNA-Gln complement(802242..802318) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0827 tRNA SeSA_A0827 NC_011094.1 802360 802436 R tRNA-Gln complement(802360..802436) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0828 tRNA SeSA_A0828 NC_011094.1 802481 802559 R tRNA-Met complement(802481..802559) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0829 tRNA SeSA_A0829 NC_011094.1 802573 802649 R tRNA-Gln complement(802573..802649) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0830 tRNA SeSA_A0830 NC_011094.1 802684 802758 R tRNA-Gln complement(802684..802758) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0831 tRNA SeSA_A0831 NC_011094.1 802781 802867 R tRNA-Leu complement(802781..802867) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0832 tRNA SeSA_A0832 NC_011094.1 802875 802953 R tRNA-Met complement(802875..802953) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0910 tRNA SeSA_A0910 NC_011094.1 884348 884425 D tRNA-Lys 884348..884425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0911 tRNA SeSA_A0911 NC_011094.1 884562 884637 D tRNA-Val 884562..884637 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0912 tRNA SeSA_A0912 NC_011094.1 884641 884716 D tRNA-Lys 884641..884716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0913 tRNA SeSA_A0913 NC_011094.1 884858 884935 D tRNA-Lys 884858..884935 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0914 tRNA SeSA_A0914 NC_011094.1 884968 885043 D tRNA-Lys 884968..885043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1064 tRNA SeSA_A1064 NC_011094.1 1035929 1036018 R tRNA-Ser complement(1035929..1036018) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1150 tRNA SeSA_A1150 NC_011094.1 1134227 1134316 D tRNA-Ser 1134227..1134316 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1199 tRNA SeSA_A1199 NC_011094.1 1183048 1183137 R tRNA-Ser complement(1183048..1183137) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1334 tRNA SeSA_A1334 NC_011094.1 1299865 1299943 D tRNA-Arg 1299865..1299943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1335 tRNA SeSA_A1335 NC_011094.1 1299945 1300013 D tRNA-OTHER 1299945..1300013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1352 tRNA SeSA_A1352 NC_011094.1 1312316 1312394 D tRNA-Arg 1312316..1312394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1519 tRNA SeSA_A1519 NC_011094.1 1465560 1465638 R tRNA-Val complement(1465560..1465638) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1520 tRNA SeSA_A1520 NC_011094.1 1465647 1465725 R tRNA-Val complement(1465647..1465725) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1890 tRNA SeSA_A1890 NC_011094.1 1829954 1830040 D tRNA-Tyr 1829954..1830040 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A1892 tRNA SeSA_A1892 NC_011094.1 1830249 1830335 D tRNA-Tyr 1830249..1830335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2098 tRNA SeSA_A2098 NC_011094.1 2013212 2013298 R tRNA-Leu complement(2013212..2013298) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2099 tRNA SeSA_A2099 NC_011094.1 2013310 2013383 R tRNA-Cys complement(2013310..2013383) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2100 tRNA SeSA_A2100 NC_011094.1 2013435 2013510 R tRNA-Gly complement(2013435..2013510) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2161 tRNA SeSA_A2161 NC_011094.1 2059346 2059437 R tRNA-Ser complement(2059346..2059437) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2163 tRNA SeSA_A2163 NC_011094.1 2060422 2060499 D tRNA-Asn 2060422..2060499 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2165 tRNA SeSA_A2165 NC_011094.1 2061098 2061175 D tRNA-Asn 2061098..2061175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2170 tRNA SeSA_A2170 NC_011094.1 2064533 2064610 R tRNA-Asn complement(2064533..2064610) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2172 tRNA SeSA_A2172 NC_011094.1 2066366 2066443 D tRNA-Asn 2066366..2066443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2468 tRNA SeSA_A2468 NC_011094.1 2350583 2350661 D tRNA-Pro 2350583..2350661 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2623 tRNA SeSA_A2623 NC_011094.1 2508530 2508606 D tRNA-Arg 2508530..2508606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2645 tRNA SeSA_A2645 NC_011094.1 2531619 2531696 R tRNA-Ala complement(2531619..2531696) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2646 tRNA SeSA_A2646 NC_011094.1 2531737 2531814 R tRNA-Ala complement(2531737..2531814) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2650 tRNA SeSA_A2650 NC_011094.1 2534519 2534594 D tRNA-Val 2534519..2534594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2651 tRNA SeSA_A2651 NC_011094.1 2534639 2534716 D tRNA-Val 2534639..2534716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2652 tRNA SeSA_A2652 NC_011094.1 2534756 2534833 D tRNA-Val 2534756..2534833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2653 tRNA SeSA_A2653 NC_011094.1 2534837 2534912 D tRNA-Lys 2534837..2534912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2853 tRNA SeSA_A2853 NC_011094.1 2752621 2752698 R tRNA-Glu complement(2752621..2752698) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2972 tRNA SeSA_A2972 NC_011094.1 2877118 2877196 R tRNA-Arg complement(2877118..2877196) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2973 tRNA SeSA_A2973 NC_011094.1 2877391 2877469 R tRNA-Arg complement(2877391..2877469) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2974 tRNA SeSA_A2974 NC_011094.1 2877530 2877608 R tRNA-Arg complement(2877530..2877608) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2975 tRNA SeSA_A2975 NC_011094.1 2877668 2877746 R tRNA-Arg complement(2877668..2877746) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2976 tRNA SeSA_A2976 NC_011094.1 2877748 2877842 R tRNA-Ser complement(2877748..2877842) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3152 tRNA SeSA_A3152 NC_011094.1 3045340 3045416 D tRNA-Met 3045340..3045416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3153 tRNA SeSA_A3153 NC_011094.1 3045446 3045522 D tRNA-Met 3045446..3045522 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3205 tRNA SeSA_A3205 NC_011094.1 3099958 3100033 R tRNA-Gly complement(3099958..3100033) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3292 tRNA SeSA_A3292 NC_011094.1 3176140 3176217 D tRNA-Phe 3176140..3176217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3403 tRNA SeSA_A3403 NC_011094.1 3286529 3286604 D tRNA-Met 3286529..3286604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3479 tRNA SeSA_A3479 NC_011094.1 3358919 3358995 R tRNA-Met complement(3358919..3358995) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3481 tRNA SeSA_A3481 NC_011094.1 3360883 3360971 R tRNA-Leu complement(3360883..3360971) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3589 tRNA SeSA_A3589 NC_011094.1 3464820 3464897 R tRNA-Thr complement(3464820..3464897) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3593 tRNA SeSA_A3593 NC_011094.1 3468218 3468295 R tRNA-Glu complement(3468218..3468295) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3834 tRNA SeSA_A3834 NC_011094.1 3704382 3704460 R tRNA-Pro complement(3704382..3704460) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3958 tRNA SeSA_A3958 NC_011094.1 3832917 3833011 D tRNA-Sec 3832917..3833011 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4102 tRNA SeSA_A4102 NC_011094.1 3977788 3977865 D tRNA-Glu 3977788..3977865 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4106 tRNA SeSA_A4106 NC_011094.1 3981319 3981397 D tRNA-Asp 3981319..3981397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4107 tRNA SeSA_A4107 NC_011094.1 3981404 3981481 D tRNA-Trp 3981404..3981481 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4142 tRNA SeSA_A4142 NC_011094.1 4020225 4020301 D tRNA-Arg 4020225..4020301 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4143 tRNA SeSA_A4143 NC_011094.1 4020355 4020432 D tRNA-His 4020355..4020432 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4144 tRNA SeSA_A4144 NC_011094.1 4020452 4020538 D tRNA-Leu 4020452..4020538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4145 tRNA SeSA_A4145 NC_011094.1 4020580 4020658 D tRNA-Pro 4020580..4020658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4196 tRNA SeSA_A4196 NC_011094.1 4076052 4076128 D tRNA-Ile 4076052..4076128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4197 tRNA SeSA_A4197 NC_011094.1 4076237 4076314 D tRNA-Ala 4076237..4076314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4344 tRNA SeSA_A4344 NC_011094.1 4219952 4220028 D tRNA-Ile 4219952..4220028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4345 tRNA SeSA_A4345 NC_011094.1 4220139 4220216 D tRNA-Ala 4220139..4220216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4351 tRNA SeSA_A4351 NC_011094.1 4227373 4227450 D tRNA-Thr 4227373..4227450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4352 tRNA SeSA_A4352 NC_011094.1 4227458 4227542 D tRNA-Tyr 4227458..4227542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4354 tRNA SeSA_A4354 NC_011094.1 4227659 4227733 D tRNA-Gly 4227659..4227733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4355 tRNA SeSA_A4355 NC_011094.1 4227739 4227816 D tRNA-Thr 4227739..4227816 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4389 tRNA SeSA_A4389 NC_011094.1 4262308 4262385 D tRNA-Glu 4262308..4262385 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4591 tRNA SeSA_A4591 NC_011094.1 4466466 4466543 R tRNA-Phe complement(4466466..4466543) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4621 tRNA SeSA_A4621 NC_011094.1 4495935 4496010 D tRNA-Gly 4495935..4496010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4622 tRNA SeSA_A4622 NC_011094.1 4496167 4496242 D tRNA-Gly 4496167..4496242 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4742 tRNA SeSA_A4742 NC_011094.1 4607062 4607148 D tRNA-Leu 4607062..4607148 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4806 tRNA SeSA_A4806 NC_011094.1 4667040 4667128 R tRNA-Leu complement(4667040..4667128) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4807 tRNA SeSA_A4807 NC_011094.1 4667159 4667245 R tRNA-Leu complement(4667159..4667245) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4808 tRNA SeSA_A4808 NC_011094.1 4667272 4667360 R tRNA-Leu complement(4667272..4667360) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0277 rRNA rrs NC_011094.1 291607 293139 D 16S ribosomal RNA 291607..293139 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0280 rRNA rrl NC_011094.1 293656 296561 D 23S ribosomal RNA 293656..296561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A0283 rRNA rrf NC_011094.1 296665 296780 D 5S ribosomal RNA 296665..296780 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2851 rRNA rrf NC_011094.1 2749106 2749221 R 5S ribosomal RNA complement(2749106..2749221) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A2854 rRNA rrs NC_011094.1 2752784 2754317 R 16S ribosomal RNA complement(2752784..2754317) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3588 rRNA rrf NC_011094.1 3464666 3464781 R 5S ribosomal RNA complement(3464666..3464781) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3590 rRNA rrf NC_011094.1 3464911 3465026 R 5S ribosomal RNA complement(3464911..3465026) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3592 rRNA rrl NC_011094.1 3465121 3468025 R 23S ribosomal RNA complement(3465121..3468025) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A3594 rRNA rrs NC_011094.1 3468381 3469914 R 16S ribosomal RNA complement(3468381..3469914) Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4101 rRNA rrs NC_011094.1 3976169 3977702 D 16S ribosomal RNA 3976169..3977702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4103 rRNA rrl NC_011094.1 3978048 3980953 D 23S ribosomal RNA 3978048..3980953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4105 rRNA rrf NC_011094.1 3981151 3981266 D 5S ribosomal RNA 3981151..3981266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4195 rRNA rrs NC_011094.1 4074448 4075981 D 16S ribosomal RNA 4074448..4075981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4198 rRNA rrl NC_011094.1 4076496 4079401 D 23S ribosomal RNA 4076496..4079401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4201 rRNA rrf NC_011094.1 4079603 4079718 D 5S ribosomal RNA 4079603..4079718 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4343 rRNA rrs NC_011094.1 4218348 4219881 D 16S ribosomal RNA 4218348..4219881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4347 rRNA rrf NC_011094.1 4223507 4223622 D 5S ribosomal RNA 4223507..4223622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4388 rRNA rrs NC_011094.1 4260689 4262222 D 16S ribosomal RNA 4260689..4262222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SeSA_A4391 rRNA rrf NC_011094.1 4265771 4265886 D 5S ribosomal RNA 4265771..4265886 Salmonella enterica subsp. enterica serovar Schwarzengrund str.