-- dump date 20140620_054506 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002112883.1 194733785 34..459 1 NC_011092.1 identified by match to protein family HMM PF00717; protein SamA 459 439843000001 SeSA_B0001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein SamA YP_002112883.1 34 D 439843 CDS YP_002112884.1 194733880 459..1730 1 NC_011092.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 1730 umuC 439843000002 umuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase V subunit UmuC YP_002112884.1 459 D 439843 CDS YP_002112885.1 194733858 1809..2060 1 NC_011092.1 identified by match to protein family HMM TIGR01552; antitoxin of toxin-antitoxin stability system, StbD family 2060 439843000003 SeSA_B0003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. antitoxin of toxin-antitoxin stability system, StbD family YP_002112885.1 1809 D 439843 CDS YP_002112886.1 194733822 2114..2419 1 NC_011092.1 hypothetical protein 2419 439843000004 SeSA_B0004 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112886.1 2114 D 439843 CDS YP_002112887.1 194733889 2598..2798 1 NC_011092.1 hypothetical protein 2798 439843000005 SeSA_B0005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112887.1 2598 D 439843 CDS YP_002112888.1 194733850 complement(3496..4467) 1 NC_011092.1 SopB; plasmid-partitioning protein 4467 sopB 439843000006 sopB Salmonella enterica subsp. enterica serovar Schwarzengrund str. plasmid-partitioning protein YP_002112888.1 3496 R 439843 CDS YP_002112889.1 194733786 complement(4467..5642) 1 NC_011092.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01656; plasmid-partitioning protein SopA 5642 sopA 439843000007 sopA Salmonella enterica subsp. enterica serovar Schwarzengrund str. plasmid-partitioning protein SopA YP_002112889.1 4467 R 439843 CDS YP_002112890.1 194733894 6374..7384 1 NC_011092.1 identified by match to protein family HMM PF01051; DNA replication protein 7384 439843000008 SeSA_B0008 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA replication protein YP_002112890.1 6374 D 439843 CDS YP_002112891.1 194733831 complement(8174..8518) 1 NC_011092.1 identified by match to protein family HMM PF08212; outer membrane lipoprotein blc 8518 439843000009 SeSA_B0009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein blc YP_002112891.1 8174 R 439843 CDS YP_002112892.1 194733809 8636..9361 1 NC_011092.1 identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein 9361 439843000010 SeSA_B0010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, MerR family protein YP_002112892.1 8636 D 439843 CDS YP_002112893.1 194733884 9461..9871 1 NC_011092.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 9871 uraH 439843000011 uraH Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyisourate hydrolase YP_002112893.1 9461 D 439843 CDS YP_002112894.1 194733838 9974..10933 1 NC_011092.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349; putative pathogenicity island protein 10933 439843000012 SeSA_B0012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative pathogenicity island protein YP_002112894.1 9974 D 439843 CDS YP_002112895.1 194733781 11079..12167 1 NC_011092.1 identified by match to protein family HMM PF02463; RecF/RecN/SMC domain protein 12167 439843000013 SeSA_B0013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RecF/RecN/SMC domain protein YP_002112895.1 11079 D 439843 CDS YP_002112896.1 194733891 complement(12230..12934) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 12934 439843000014 SeSA_B0014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112896.1 12230 R 439843 CDS YP_002112897.1 194733836 complement(13198..14271) 1 NC_011092.1 hypothetical protein 14271 439843000015 SeSA_B0015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112897.1 13198 R 439843 CDS YP_002112898.1 194733816 complement(14315..14464) 1 NC_011092.1 hypothetical protein 14464 439843000016 SeSA_B0016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112898.1 14315 R 439843 CDS YP_002112899.1 194733883 14806..15045 1 NC_011092.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 15045 439843000017 SeSA_B0017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional antitoxin/transcriptional repressor RelB YP_002112899.1 14806 D 439843 CDS YP_002112900.1 194733877 15045..15332 1 NC_011092.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; toxin RelE 15332 439843000018 SeSA_B0018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. toxin RelE YP_002112900.1 15045 D 439843 CDS YP_002112901.1 194733857 complement(15636..16418) 1 NC_011092.1 identified by match to protein family HMM PF01695; transposase/IS protein 16418 439843000019 SeSA_B0019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase/IS protein YP_002112901.1 15636 R 439843 CDS YP_002112902.1 194733790 complement(16415..17437) 1 NC_011092.1 identified by match to protein family HMM PF00665; transposase for insertion sequence 17437 439843000020 SeSA_B0020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase for insertion sequence YP_002112902.1 16415 R 439843 CDS YP_002112903.1 194733834 18237..20444 1 NC_011092.1 hypothetical protein 20444 439843000021 SeSA_B0021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112903.1 18237 D 439843 CDS YP_002112904.1 194733826 20447..23029 1 NC_011092.1 EstP 23029 439843000022 SeSA_B0022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. EstP YP_002112904.1 20447 D 439843 CDS YP_002112905.1 194733878 complement(23075..23287) 1 NC_011092.1 transposase 23287 439843000023 SeSA_B0023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112905.1 23075 R 439843 CDS YP_002112906.1 194733821 complement(23450..24280) 1 NC_011092.1 identified by match to protein family HMM PF00665; integrase core domain protein 24280 439843000024 SeSA_B0024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase core domain protein YP_002112906.1 23450 R 439843 CDS YP_002112907.1 194733828 complement(24307..24570) 1 NC_011092.1 identified by match to protein family HMM PF01527; transposase subfamily 24570 439843000025 SeSA_B0026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase subfamily YP_002112907.1 24307 R 439843 CDS YP_002112908.1 194733830 complement(24999..25976) 1 NC_011092.1 identified by match to protein family HMM PF00589; integrase/recombinase 25976 439843000026 SeSA_B0027 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase/recombinase YP_002112908.1 24999 R 439843 CDS YP_002112909.1 194733780 26373..26537 1 NC_011092.1 identified by match to protein family HMM PF03400; IS1 protein InsB 26537 439843000028 SeSA_B0029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS1 protein InsB YP_002112909.1 26373 D 439843 CDS YP_002112910.1 194733886 complement(27048..28868) 1 NC_011092.1 identified by match to protein family HMM PF01526; transposase 28868 439843000029 SeSA_B0030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112910.1 27048 R 439843 CDS YP_002112911.1 194733776 29333..30217 1 NC_011092.1 identified by match to protein family HMM PF00892; drug/metabolite transporter 30217 439843000030 SeSA_B0031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. drug/metabolite transporter YP_002112911.1 29333 D 439843 CDS YP_002112912.1 194733848 complement(30249..31448) 1 NC_011092.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00880; tetracycline resistance protein, class A 31448 tetA 439843000031 tetA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetracycline resistance protein, class A YP_002112912.1 30249 R 439843 CDS YP_002112913.1 194733819 31527..32204 1 NC_011092.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909; tetracycline repressor protein, class A 32204 tetR 439843000032 tetR Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetracycline repressor protein, class A YP_002112913.1 31527 D 439843 CDS YP_002112914.1 194733882 complement(32236..32478) 1 NC_011092.1 hypothetical protein 32478 439843000033 SeSA_B0034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112914.1 32236 R 439843 CDS YP_002112915.1 194733801 complement(32536..33303) 1 NC_011092.1 identified by match to protein family HMM PF01526; transposase 33303 439843000034 SeSA_B0035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112915.1 32536 R 439843 CDS YP_002112916.1 194733856 complement(33549..36521) 1 NC_011092.1 identified by match to protein family HMM PF01526; Tn3 family transposase 36521 439843000035 SeSA_B0036 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Tn3 family transposase YP_002112916.1 33549 R 439843 CDS YP_002112917.1 194733888 complement(36524..37141) 1 NC_011092.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; transposon Tn21 resolvase 37141 439843000036 SeSA_B0037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposon Tn21 resolvase YP_002112917.1 36524 R 439843 CDS YP_002112918.1 194733867 37249..37428 1 NC_011092.1 putative transcriptional regulator 37428 439843000037 SeSA_B0038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative transcriptional regulator YP_002112918.1 37249 D 439843 CDS YP_002112919.1 194733804 complement(37387..37866) 1 NC_011092.1 identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249; integrase/recombinase 37866 439843000038 SeSA_B0039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase/recombinase YP_002112919.1 37387 R 439843 CDS YP_002112920.1 194733797 complement(37923..38627) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 38627 439843000039 SeSA_B0040 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112920.1 37923 R 439843 CDS YP_002112921.1 194733885 complement(38674..39942) 1 NC_011092.1 identified by match to protein family HMM PF00665; TniAdelta1 39942 439843000040 SeSA_B0041 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TniAdelta1 YP_002112921.1 38674 R 439843 CDS YP_002112922.1 194733823 complement(40017..40724) 1 NC_011092.1 identified by match to protein family HMM PF00563; Urf2 40724 439843000041 SeSA_B0042 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Urf2 YP_002112922.1 40017 R 439843 CDS YP_002112923.1 194733806 complement(40721..40957) 1 NC_011092.1 identified by match to protein family HMM PF05052; putative mercury resistance protein 40957 439843000042 SeSA_B0043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative mercury resistance protein YP_002112923.1 40721 R 439843 CDS YP_002112924.1 194733868 complement(40954..41316) 1 NC_011092.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02054; transcriptional regulator MerD 41316 merD 439843000043 merD Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator MerD YP_002112924.1 40954 R 439843 CDS YP_002112925.1 194733879 complement(41334..43028) 1 NC_011092.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; putative mercuric reductase 43028 merA 439843000044 merA Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative mercuric reductase YP_002112925.1 41334 R 439843 CDS YP_002112926.1 194733784 complement(43192..44052) 1 NC_011092.1 identified by match to protein family HMM PF00144; beta-lactamase TEM 44052 blaT 439843000045 blaT Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-lactamase TEM YP_002112926.1 43192 R 439843 CDS YP_002112927.1 194733817 44446..45150 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 45150 439843000047 SeSA_B0048 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112927.1 44446 D 439843 CDS YP_002112928.1 194733872 45214..45330 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 45330 439843000048 SeSA_B0049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112928.1 45214 D 439843 CDS YP_002112929.1 194733796 45485..45877 1 NC_011092.1 identified by match to protein family HMM PF01243; NimC/NimA family protein 45877 439843000049 SeSA_B0050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NimC/NimA family protein YP_002112929.1 45485 D 439843 CDS YP_002112930.1 194733852 complement(46197..46313) 1 NC_011092.1 bleomycin resistance protein 46313 439843000050 SeSA_B0051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bleomycin resistance protein YP_002112930.1 46197 R 439843 CDS YP_002112931.1 194733874 complement(46715..49681) 1 NC_011092.1 identified by match to protein family HMM PF01526; Tn3 family transposase 49681 439843000051 SeSA_B0052 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Tn3 family transposase YP_002112931.1 46715 R 439843 CDS YP_002112932.1 194733864 complement(49684..50244) 1 NC_011092.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; transposon Tn21 resolvase 50244 439843000052 SeSA_B0053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposon Tn21 resolvase YP_002112932.1 49684 R 439843 CDS YP_002112933.1 194733793 complement(50306..50554) 1 NC_011092.1 insertion sequence 50554 439843000053 SeSA_B0054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. insertion sequence YP_002112933.1 50306 R 439843 CDS YP_002112934.1 194733843 50555..51259 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 51259 439843000054 SeSA_B0055 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112934.1 50555 D 439843 CDS YP_002112935.1 194733824 51299..51571 1 NC_011092.1 hypothetical protein 51571 439843000055 SeSA_B0056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112935.1 51299 D 439843 CDS YP_002112936.1 194733815 51717..52580 1 NC_011092.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 52580 439843000056 SeSA_B0057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. short chain dehydrogenase YP_002112936.1 51717 D 439843 CDS YP_002112937.1 194733847 complement(52549..52725) 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 52725 439843000057 SeSA_B0058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112937.1 52549 R 439843 CDS YP_002112938.1 194733840 53014..53241 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 53241 439843000058 SeSA_B0059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112938.1 53014 D 439843 CDS YP_002112939.1 194733777 53332..54123 1 NC_011092.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 54123 folP 439843000059 folP Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydropteroate synthase YP_002112939.1 53332 D 439843 CDS YP_002112940.1 194733845 54373..55056 1 NC_011092.1 identified by match to protein family HMM PF00872; transposase, Mutator family 55056 439843000060 SeSA_B0061 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase, Mutator family YP_002112940.1 54373 D 439843 CDS YP_002112941.1 194733807 complement(55303..55635) 1 NC_011092.1 identified by match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacE 55635 439843000061 SeSA_B0062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quaternary ammonium compound-resistance protein QacE YP_002112941.1 55303 R 439843 CDS YP_002112942.1 194733859 complement(55805..56596) 1 NC_011092.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 56596 439843000062 SeSA_B0063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside resistance protein YP_002112942.1 55805 R 439843 CDS YP_002112943.1 194733791 complement(56689..57948) 1 NC_011092.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; match to protein family HMM TIGR00880; chloramphenicol resistance protein 57948 439843000063 SeSA_B0064 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chloramphenicol resistance protein YP_002112943.1 56689 R 439843 CDS YP_002112944.1 194733865 complement(58210..59001) 1 NC_011092.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 59001 aadA 439843000064 aadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside resistance protein YP_002112944.1 58210 R 439843 CDS YP_002112945.1 194733892 complement(59059..59667) 1 NC_011092.1 HAD-superfamily, subfamily IB hydrolase 59667 439843000065 SeSA_B0066 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HAD-superfamily, subfamily IB hydrolase YP_002112945.1 59059 R 439843 CDS YP_002112946.1 194733803 complement(59763..60773) 1 NC_011092.1 identified by match to protein family HMM PF00561; streptothricin acetyltransferase Sat-1 60773 sat 439843000066 sat Salmonella enterica subsp. enterica serovar Schwarzengrund str. streptothricin acetyltransferase Sat-1 YP_002112946.1 59763 R 439843 CDS YP_002112947.1 194733854 60772..61785 1 NC_011092.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02249; integrase/recombinase 61785 439843000067 SeSA_B0067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase/recombinase YP_002112947.1 60772 D 439843 CDS YP_002112948.1 194733846 complement(61744..61923) 1 NC_011092.1 putative transcriptional regulator 61923 439843000068 SeSA_B0069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative transcriptional regulator YP_002112948.1 61744 R 439843 CDS YP_002112949.1 194733805 complement(62277..62981) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 62981 439843000069 SeSA_B0070 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112949.1 62277 R 439843 CDS YP_002112950.1 194733851 complement(62993..63667) 1 NC_011092.1 transposase 63667 439843000070 SeSA_B0071 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112950.1 62993 R 439843 CDS YP_002112951.1 194733792 63612..65252 1 NC_011092.1 identified by match to protein family HMM PF01526; transposase 65252 439843000071 SeSA_B0072 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112951.1 63612 D 439843 CDS YP_002112952.1 194733875 complement(65318..65737) 1 NC_011092.1 TraB protein 65737 439843000072 SeSA_B0074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TraB protein YP_002112952.1 65318 R 439843 CDS YP_002112953.1 194733814 65718..65846 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 65846 439843000073 SeSA_B0073 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112953.1 65718 D 439843 CDS YP_002112954.1 194733873 complement(65850..66422) 1 NC_011092.1 identified by match to protein family HMM PF03743; conjugal transfer protein TrbI 66422 439843000074 SeSA_B0075 Salmonella enterica subsp. enterica serovar Schwarzengrund str. conjugal transfer protein TrbI YP_002112954.1 65850 R 439843 CDS YP_002112955.1 194733860 complement(66574..67278) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 67278 439843000075 SeSA_B0076 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112955.1 66574 R 439843 CDS YP_002112956.1 194733802 67375..67554 1 NC_011092.1 replication initiator protein 67554 439843000076 SeSA_B0077 Salmonella enterica subsp. enterica serovar Schwarzengrund str. replication initiator protein YP_002112956.1 67375 D 439843 CDS YP_002112957.1 194733779 complement(68170..68874) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 68874 439843000077 SeSA_B0078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112957.1 68170 R 439843 CDS YP_002112958.1 194733825 68933..70240 1 NC_011092.1 identified by match to protein family HMM PF01526; transposase 70240 439843000078 SeSA_B0079 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002112958.1 68933 D 439843 CDS YP_002112959.1 194733782 complement(70314..70775) 1 NC_011092.1 identified by match to protein family HMM PF03203; putative mercury transport protein MerC 70775 439843000079 SeSA_B0080 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative mercury transport protein MerC YP_002112959.1 70314 R 439843 CDS YP_002112960.1 194733855 complement(70772..71047) 1 NC_011092.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR02052; mercuric transport protein periplasmic component 71047 merP 439843000080 merP Salmonella enterica subsp. enterica serovar Schwarzengrund str. mercuric transport protein periplasmic component YP_002112960.1 70772 R 439843 CDS YP_002112961.1 194733795 complement(71061..71411) 1 NC_011092.1 identified by match to protein family HMM PF02411; putative mercuric transport protein 71411 439843000081 SeSA_B0082 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative mercuric transport protein YP_002112961.1 71061 R 439843 CDS YP_002112962.1 194733808 71483..71917 1 NC_011092.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02051; putative transcriptional regulator MerR 71917 merR 439843000082 merR Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative transcriptional regulator MerR YP_002112962.1 71483 D 439843 CDS YP_002112963.1 194733876 complement(71907..72689) 1 NC_011092.1 identified by match to protein family HMM PF04655; streptomycin phosphotransferase B 72689 439843000083 SeSA_B0084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. streptomycin phosphotransferase B YP_002112963.1 71907 R 439843 CDS YP_002112964.1 194733775 complement(72689..73678) 1 NC_011092.1 identified by match to protein family HMM PF01636; aminoglycoside resistance protein A 73678 strA 439843000084 strA Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside resistance protein A YP_002112964.1 72689 R 439843 CDS YP_002112965.1 194733832 complement(73906..74547) 1 NC_011092.1 hypothetical protein 74547 439843000085 SeSA_B0086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112965.1 73906 R 439843 CDS YP_002112966.1 194733835 complement(75588..75764) 1 NC_011092.1 phage integrase family protein 75764 439843000088 SeSA_B0089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage integrase family protein YP_002112966.1 75588 R 439843 CDS YP_002112967.1 194733893 76091..76906 1 NC_011092.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase type-2 76906 sul2 439843000089 sul2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydropteroate synthase type-2 YP_002112967.1 76091 D 439843 CDS YP_002112968.1 194733813 76993..77295 1 NC_011092.1 identified by match to protein family HMM PF02878; phosphoglucosamine mutase 77295 439843000090 SeSA_B0091 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglucosamine mutase YP_002112968.1 76993 D 439843 CDS YP_002112969.1 194733853 complement(77471..78964) 1 NC_011092.1 identified by match to protein family HMM PF04986; iscr2 transposase 78964 439843000091 SeSA_B0092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iscr2 transposase YP_002112969.1 77471 R 439843 CDS YP_002112970.1 194733863 complement(79396..80133) 1 NC_011092.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase 80133 439843000093 SeSA_B0094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. resolvase YP_002112970.1 79396 R 439843 CDS YP_002112971.1 194733827 complement(80619..80759) 1 NC_011092.1 hypothetical protein 80759 439843000094 SeSA_B0095 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112971.1 80619 R 439843 CDS YP_002112972.1 194733841 complement(80765..81469) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 81469 439843000095 SeSA_B0096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112972.1 80765 R 439843 CDS YP_002112973.1 194733812 81549..82049 1 NC_011092.1 hypothetical protein 82049 439843000096 SeSA_B0097 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112973.1 81549 D 439843 CDS YP_002112974.1 194733794 82199..82840 1 NC_011092.1 identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase 2 82840 cmlA 439843000097 cmlA Salmonella enterica subsp. enterica serovar Schwarzengrund str. chloramphenicol acetyltransferase 2 YP_002112974.1 82199 D 439843 CDS YP_002112975.1 194733890 complement(82984..83688) 1 NC_011092.1 identified by match to protein family HMM PF00665; IS26 transposase 83688 439843000098 SeSA_B0099 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IS26 transposase YP_002112975.1 82984 R 439843 CDS YP_002112976.1 194733789 complement(83905..85623) 1 NC_011092.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 85623 439843000099 SeSA_B0100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine kinase YP_002112976.1 83905 R 439843 CDS YP_002112977.1 194733849 complement(85620..86108) 1 NC_011092.1 oxidoreductase molybdopterin binding 86108 439843000100 SeSA_B0101 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase molybdopterin binding YP_002112977.1 85620 R 439843 CDS YP_002112978.1 194733833 complement(86101..87054) 1 NC_011092.1 hypothetical protein 87054 439843000101 SeSA_B0102 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112978.1 86101 R 439843 CDS YP_002112979.1 194733861 complement(87088..88002) 1 NC_011092.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08667; response regulator receiver protein 88002 439843000102 SeSA_B0103 Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator receiver protein YP_002112979.1 87088 R 439843 CDS YP_002112980.1 194733787 88316..88624 1 NC_011092.1 hypothetical protein 88624 439843000103 SeSA_B0104 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112980.1 88316 D 439843 CDS YP_002112981.1 194733799 88617..88832 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 88832 439843000104 SeSA_B0105 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112981.1 88617 D 439843 CDS YP_002112982.1 194733837 88835..89497 1 NC_011092.1 identified by match to protein family HMM PF01464; type IV secretory pathway VirB1 component 89497 439843000105 SeSA_B0106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type IV secretory pathway VirB1 component YP_002112982.1 88835 D 439843 CDS YP_002112983.1 194733881 89508..89807 1 NC_011092.1 identified by match to protein family HMM PF04956; conjugal transfer protein TrbC 89807 439843000106 SeSA_B0107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. conjugal transfer protein TrbC YP_002112983.1 89508 D 439843 CDS YP_002112984.1 194733818 89817..92567 1 NC_011092.1 identified by match to protein family HMM PF03135; match to protein family HMM PF05101; TriC protein 92567 439843000107 SeSA_B0108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TriC protein YP_002112984.1 89817 D 439843 CDS YP_002112985.1 194733862 92586..93302 1 NC_011092.1 identified by match to protein family HMM PF07996; TriD protein 93302 439843000108 SeSA_B0109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TriD protein YP_002112985.1 92586 D 439843 CDS YP_002112986.1 194733798 93314..93598 1 NC_011092.1 putative entry exclusion protein 93598 439843000109 SeSA_B0110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putative entry exclusion protein YP_002112986.1 93314 D 439843 CDS YP_002112987.1 194733870 93616..94623 1 NC_011092.1 identified by match to protein family HMM PF04610; TriE protein 94623 439843000110 SeSA_B0111 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TriE protein YP_002112987.1 93616 D 439843 CDS YP_002112988.1 194733810 94700..94840 1 NC_011092.1 hypothetical protein 94840 439843000111 SeSA_B0112 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112988.1 94700 D 439843 CDS YP_002112989.1 194733895 94833..95519 1 NC_011092.1 identified by match to protein family HMM PF04335; TriG protein 95519 439843000112 SeSA_B0113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TriG protein YP_002112989.1 94833 D 439843 CDS YP_002112990.1 194733829 95512..96405 1 NC_011092.1 identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781; P-type conjugative transfer protein VirB9 96405 virB9 439843000113 virB9 Salmonella enterica subsp. enterica serovar Schwarzengrund str. P-type conjugative transfer protein VirB9 YP_002112990.1 95512 D 439843 CDS YP_002112991.1 194733887 96402..97598 1 NC_011092.1 identified by match to protein family HMM PF03743; TriI protein 97598 439843000114 SeSA_B0115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TriI protein YP_002112991.1 96402 D 439843 CDS YP_002112992.1 194733800 97602..98651 1 NC_011092.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788; P-type DNA transfer ATPase VirB11 98651 virB1 439843000115 virB1 Salmonella enterica subsp. enterica serovar Schwarzengrund str. P-type DNA transfer ATPase VirB11 YP_002112992.1 97602 D 439843 CDS YP_002112993.1 194733811 98638..99039 1 NC_011092.1 hypothetical protein 99039 439843000116 SeSA_B0117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112993.1 98638 D 439843 CDS YP_002112994.1 194733866 99130..99447 1 NC_011092.1 killer protein 99447 439843000117 SeSA_B0118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. killer protein YP_002112994.1 99130 D 439843 CDS YP_002112995.1 194733869 99474..99809 1 NC_011092.1 hypothetical protein 99809 439843000118 SeSA_B0119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112995.1 99474 D 439843 CDS YP_002112996.1 194733788 99827..100093 1 NC_011092.1 hypothetical plasmid protein 100093 439843000119 SeSA_B0120 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical plasmid protein YP_002112996.1 99827 D 439843 CDS YP_002112997.1 194733844 100090..102291 1 NC_011092.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 3 102291 439843000120 SeSA_B0121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA topoisomerase 3 YP_002112997.1 100090 D 439843 CDS YP_002112998.1 194733774 102288..102680 1 NC_011092.1 identified by match to protein family HMM PF00816; DNA binding protein 102680 439843000121 SeSA_B0122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA binding protein YP_002112998.1 102288 D 439843 CDS YP_002112999.1 194733842 102750..102875 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 102875 439843000122 SeSA_B0123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002112999.1 102750 D 439843 CDS YP_002113000.1 194733778 103389..105296 1 NC_011092.1 mobilization protein 105296 439843000123 SeSA_B0124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mobilization protein YP_002113000.1 103389 D 439843 CDS YP_002113001.1 194733839 105311..106057 1 NC_011092.1 mobilization protein 106057 439843000124 SeSA_B0125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mobilization protein YP_002113001.1 105311 D 439843 CDS YP_002113002.1 194733783 106050..106577 1 NC_011092.1 phospholipase D (PLD) family protein 106577 439843000125 SeSA_B0126 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospholipase D (PLD) family protein YP_002113002.1 106050 D 439843 CDS YP_002113003.1 194733820 complement(106609..107040) 1 NC_011092.1 identified by glimmer; putative; hypothetical protein 107040 439843000126 SeSA_B0127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113003.1 106609 R 439843 CDS YP_002113004.1 194733871 complement(107520..108485) 1 NC_011092.1 identified by match to protein family HMM PF08401; antirestriction protein 108485 439843000127 SeSA_B0128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. antirestriction protein YP_002113004.1 107520 R 439843 CDS YP_002113005.1 194733901 complement(160..1095) 1 NC_011093.1 identified by match to protein family HMM PF03090; match to protein family HMM PF08708; replication protein 1095 439843000130 SeSA_C0001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. replication protein YP_002113005.1 160 R 439843 CDS YP_002113006.1 194733898 1596..1931 1 NC_011093.1 identified by glimmer; putative; hypothetical protein 1931 439843000131 SeSA_C0002 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113006.1 1596 D 439843 CDS YP_002113007.1 194733900 complement(1983..2306) 1 NC_011093.1 hypothetical protein 2306 439843000132 SeSA_C0003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113007.1 1983 R 439843 CDS YP_002113008.1 194733899 complement(2398..3933) 1 NC_011093.1 identified by match to protein family HMM PF03389; 43 kDa relaxation protein 3933 439843000133 SeSA_C0004 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 43 kDa relaxation protein YP_002113008.1 2398 R 439843 CDS YP_002113009.1 194733897 4018..4551 1 NC_011093.1 hypothetical protein 4551 439843000134 SeSA_C0005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113009.1 4018 D 439843 CDS YP_002113010.1 194737774 337..2799 1 NC_011094.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 439843000135 thrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional aspartokinase I/homoserine dehydrogenase I YP_002113010.1 337 D 439843 CDS YP_002113011.1 194734054 2801..3730 1 NC_011094.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 439843000136 thrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. homoserine kinase YP_002113011.1 2801 D 439843 CDS YP_002113012.1 194736906 3734..5020 1 NC_011094.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 439843000137 thrC Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine synthase YP_002113012.1 3734 D 439843 CDS YP_002113013.1 194738139 complement(5114..5887) 1 NC_011094.1 identified by match to protein family HMM PF03883; hypothetical protein 5887 439843000138 SeSA_A0005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113013.1 5114 R 439843 CDS YP_002113014.1 194735924 complement(5966..7423) 1 NC_011094.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT 7423 439843000139 SeSA_A0006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino-acid carrier protein AlsT YP_002113014.1 5966 R 439843 CDS YP_002113015.1 194736669 7665..8618 1 NC_011094.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 8618 tal2 439843000140 tal2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transaldolase B YP_002113015.1 7665 D 439843 CDS YP_002113016.1 194734929 8729..9319 1 NC_011094.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9319 mogA 439843000141 mogA Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdenum cofactor biosynthesis protein MogA YP_002113016.1 8729 D 439843 CDS YP_002113017.1 194735180 complement(9376..9942) 1 NC_011094.1 identified by match to protein family HMM PF01184; hypothetical protein 9942 439843000142 SeSA_A0009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113017.1 9376 R 439843 CDS YP_002113018.1 194737389 complement(10092..10805) 1 NC_011094.1 identified by match to protein family HMM PF03667; hypothetical protein 10805 439843000143 SeSA_A0010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113018.1 10092 R 439843 CDS YP_002113019.1 194737872 complement(10841..11236) 1 NC_011094.1 hypothetical protein 11236 439843000144 SeSA_A0011 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113019.1 10841 R 439843 CDS YP_002113020.1 194737078 11300..11425 1 NC_011094.1 identified by glimmer; hypothetical protein 11425 439843000145 SeSA_A0012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113020.1 11300 D 439843 CDS YP_002113021.1 194735871 11594..13510 1 NC_011094.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13510 dnaK 439843000146 dnaK Salmonella enterica subsp. enterica serovar Schwarzengrund str. molecular chaperone DnaK YP_002113021.1 11594 D 439843 CDS YP_002113022.1 194733969 13596..14735 1 NC_011094.1 'chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion'; molecular chaperone DnaJ 14735 dnaJ 439843000147 dnaJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. molecular chaperone DnaJ YP_002113022.1 13596 D 439843 CDS YP_002113023.1 194734577 14847..14960 1 NC_011094.1 identified by glimmer; hypothetical protein 14960 439843000148 SeSA_A0015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113023.1 14847 D 439843 CDS YP_002113024.1 194735063 15016..15963 1 NC_011094.1 identified by match to protein family HMM PF00126; transcriptional regulator 15963 439843000149 SeSA_A0016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002113024.1 15016 D 439843 CDS YP_002113025.1 194735831 16132..16434 1 NC_011094.1 bacteriophage protein 16434 439843000150 SeSA_A0017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage protein YP_002113025.1 16132 D 439843 CDS YP_002113026.1 194734342 complement(16495..17028) 1 NC_011094.1 identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein 17028 439843000151 SeSA_A0018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113026.1 16495 R 439843 CDS YP_002113027.1 194734496 complement(17045..17488) 1 NC_011094.1 hypothetical protein 17488 439843000152 SeSA_A0019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113027.1 17045 R 439843 CDS YP_002113028.1 194737593 17869..19968 1 NC_011094.1 identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 19968 439843000153 SeSA_A0020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exochitinase YP_002113028.1 17869 D 439843 CDS YP_002113029.1 194738313 20061..23057 1 NC_011094.1 hydroxymethyltransferase 23057 439843000154 SeSA_A0021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxymethyltransferase YP_002113029.1 20061 D 439843 CDS YP_002113030.1 194738006 23349..24041 1 NC_011094.1 hypothetical protein 24041 439843000155 SeSA_A0022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113030.1 23349 D 439843 CDS YP_002113031.1 194737212 24472..25014 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 25014 439843000156 SeSA_A0023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113031.1 24472 D 439843 CDS YP_002113032.1 194735713 25116..25802 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 25802 439843000157 SeSA_A0024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein FimC YP_002113032.1 25116 D 439843 CDS YP_002113033.1 194733954 25762..28428 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 28428 439843000158 SeSA_A0025 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein FimD YP_002113033.1 25762 D 439843 CDS YP_002113034.1 194735351 28429..29436 1 NC_011094.1 identified by match to protein family HMM PF00419; mannose binding protein FimH 29436 439843000159 SeSA_A0026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannose binding protein FimH YP_002113034.1 28429 D 439843 CDS YP_002113035.1 194737224 29467..29982 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 29982 439843000160 SeSA_A0027 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113035.1 29467 D 439843 CDS YP_002113036.1 194736987 29998..30516 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 30516 439843000161 SeSA_A0028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113036.1 29998 D 439843 CDS YP_002113037.1 194736384 30476..31213 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 31213 439843000162 SeSA_A0029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial chaperone YP_002113037.1 30476 D 439843 CDS YP_008119758.1 513549428 31278..32123 1 NC_011094.1 hypothetical protein 32123 439843000163 SeSA_A0030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119758.1 31278 D 439843 CDS YP_002113038.1 194734689 32162..32449 1 NC_011094.1 hypothetical protein 32449 439843000164 SeSA_A0031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113038.1 32162 D 439843 CDS YP_002113039.1 194734441 complement(32549..32998) 1 NC_011094.1 hypothetical protein 32998 439843000165 SeSA_A0032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113039.1 32549 R 439843 CDS YP_002113040.1 194734337 33368..34372 1 NC_011094.1 identified by match to protein family HMM PF00126; transcriptional regulator 34372 439843000166 SeSA_A0033 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002113040.1 33368 D 439843 CDS YP_002113041.1 194735987 complement(34380..34817) 1 NC_011094.1 transcriptional regulator 34817 439843000167 SeSA_A0034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002113041.1 34380 R 439843 CDS YP_002113042.1 194735377 34829..34975 1 NC_011094.1 identified by glimmer; hypothetical protein 34975 439843000168 SeSA_A0035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113042.1 34829 D 439843 CDS YP_002113043.1 194736972 35340..37058 1 NC_011094.1 identified by match to protein family HMM PF05935; arylsulfotransferase 37058 439843000169 SeSA_A0036 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfotransferase YP_002113043.1 35340 D 439843 CDS YP_002113044.1 194736342 complement(37104..38675) 1 NC_011094.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 38675 439843000170 SeSA_A0037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5'-nucleotidase YP_002113044.1 37104 R 439843 CDS YP_002113045.1 194737923 complement(38774..39535) 1 NC_011094.1 identified by match to protein family HMM PF07135; outer membrane/exported protein 39535 439843000171 SeSA_A0038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane/exported protein YP_002113045.1 38774 R 439843 CDS YP_002113046.1 194734974 complement(39843..40028) 1 NC_011094.1 identified by glimmer; hypothetical protein 40028 439843000172 SeSA_A0039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113046.1 39843 R 439843 CDS YP_002113047.1 194734352 40130..41623 1 NC_011094.1 identified by match to protein family HMM PF00884; sulfatase 41623 439843000173 SeSA_A0040 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfatase YP_002113047.1 40130 D 439843 CDS YP_002113048.1 194735938 41722..42912 1 NC_011094.1 identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 42912 439843000174 SeSA_A0041 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chondroitin sulfate/heparin utilization regulation protein YP_002113048.1 41722 D 439843 CDS YP_002113049.1 194735317 42937..44184 1 NC_011094.1 hypothetical protein 44184 439843000175 SeSA_A0042 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113049.1 42937 D 439843 CDS YP_002113050.1 194735149 44311..46026 1 NC_011094.1 identified by match to protein family HMM PF05935; arylsulfotransferase 46026 439843000176 SeSA_A0043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfotransferase YP_002113050.1 44311 D 439843 CDS YP_002113051.1 194736826 46189..47355 1 NC_011094.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 47355 nhaA 439843000177 nhaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. pH-dependent sodium/proton antiporter YP_002113051.1 46189 D 439843 CDS YP_002113052.1 194736409 47417..48316 1 NC_011094.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48316 nhaR 439843000178 nhaR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator NhaR YP_002113052.1 47417 D 439843 CDS YP_002113053.1 194737987 complement(48371..50410) 1 NC_011094.1 identified by match to protein family HMM PF01055; glycoside hydrolase, family 31 50410 439843000179 SeSA_A0046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycoside hydrolase, family 31 YP_002113053.1 48371 R 439843 CDS YP_002113054.1 194738222 complement(50450..51823) 1 NC_011094.1 identified by match to protein family HMM TIGR00792; xylose-proton symporter 51823 439843000180 SeSA_A0047 Salmonella enterica subsp. enterica serovar Schwarzengrund str. xylose-proton symporter YP_002113054.1 50450 R 439843 CDS YP_002113055.1 194737585 complement(52284..52547) 1 NC_011094.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52547 rpsT 439843000181 rpsT Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S20 YP_002113055.1 52284 R 439843 CDS YP_002113056.1 194734968 52876..53814 1 NC_011094.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53814 ribF 439843000182 ribF Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional riboflavin kinase/FMN adenylyltransferase YP_002113056.1 52876 D 439843 CDS YP_002113057.1 194734368 53823..56693 1 NC_011094.1 'IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme'; isoleucyl-tRNA synthetase 56693 ileS 439843000183 ileS Salmonella enterica subsp. enterica serovar Schwarzengrund str. isoleucyl-tRNA synthetase YP_002113057.1 53823 D 439843 CDS YP_002113058.1 194735705 56693..57193 1 NC_011094.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57193 lspA 439843000184 lspA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein signal peptidase YP_002113058.1 56693 D 439843 CDS YP_002113059.1 194735100 57207..57338 1 NC_011094.1 identified by glimmer; hypothetical protein 57338 439843000185 SeSA_A0052 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113059.1 57207 D 439843 CDS YP_002113060.1 194737896 57348..57797 1 NC_011094.1 identified by match to protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 57797 fkpB 439843000186 fkpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. FKBP-type peptidylprolyl isomerase YP_002113060.1 57348 D 439843 CDS YP_002113061.1 194735346 57800..58750 1 NC_011094.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58750 ispH 439843000187 ispH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002113061.1 57800 D 439843 CDS YP_002113062.1 194734702 complement(58862..58990) 1 NC_011094.1 identified by glimmer; hypothetical protein 58990 439843000188 SeSA_A0055 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113062.1 58862 R 439843 CDS YP_002113063.1 194734594 59001..60152 1 NC_011094.1 hypothetical protein 60152 439843000189 SeSA_A0056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113063.1 59001 D 439843 CDS YP_002113064.1 194734027 60168..61088 1 NC_011094.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61088 439843000190 SeSA_A0057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleoside hydrolase RihC YP_002113064.1 60168 D 439843 CDS YP_002113065.1 194735861 complement(61110..61796) 1 NC_011094.1 identified by match to protein family HMM PF00072; transcriptional regulatory protein CitB 61796 439843000191 SeSA_A0058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein CitB YP_002113065.1 61110 R 439843 CDS YP_002113066.1 194735213 complement(61798..63456) 1 NC_011094.1 identified by match to protein family HMM PF02518; sensor kinase DpiB 63456 439843000192 SeSA_A0059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor kinase DpiB YP_002113066.1 61798 R 439843 CDS YP_002113067.1 194737067 complement(63552..64853) 1 NC_011094.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 64853 439843000193 SeSA_A0060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase subunit beta YP_002113067.1 63552 R 439843 CDS YP_002113068.1 194736505 complement(64866..66635) 1 NC_011094.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 66635 oadA 439843000194 oadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase YP_002113068.1 64866 R 439843 CDS YP_002113069.1 194738402 complement(66651..66890) 1 NC_011094.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66890 439843000195 SeSA_A0062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase subunit gamma YP_002113069.1 66651 R 439843 CDS YP_002113070.1 194737947 complement(67049..68389) 1 NC_011094.1 identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter 68389 439843000196 SeSA_A0063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate-sodium symporter YP_002113070.1 67049 R 439843 CDS YP_002113071.1 194734877 68646..69677 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 69677 citC 439843000197 citC Salmonella enterica subsp. enterica serovar Schwarzengrund str. [citrate (pro-3S)-lyase] ligase YP_002113071.1 68646 D 439843 CDS YP_002113072.1 194734690 69707..70000 1 NC_011094.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 70000 citD 439843000198 citD Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate lyase subunit gamma YP_002113072.1 69707 D 439843 CDS YP_002113073.1 194734726 69997..70866 1 NC_011094.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 70866 citE 439843000199 citE Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate (pro-3S)-lyase subunit beta YP_002113073.1 69997 D 439843 CDS YP_002113074.1 194737324 70877..72397 1 NC_011094.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 72397 citF 439843000200 citF Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate lyase subunit alpha YP_002113074.1 70877 D 439843 CDS YP_002113075.1 194734188 72397..72948 1 NC_011094.1 identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 72948 citX 439843000201 citX Salmonella enterica subsp. enterica serovar Schwarzengrund str. holo-ACP synthase CitX YP_002113075.1 72397 D 439843 CDS YP_002113076.1 194734090 72926..73834 1 NC_011094.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 73834 citG 439843000202 citG Salmonella enterica subsp. enterica serovar Schwarzengrund str. triphosphoribosyl-dephospho-CoA synthase CitG YP_002113076.1 72926 D 439843 CDS YP_002113077.1 194735525 74014..74835 1 NC_011094.1 'catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis'; dihydrodipicolinate reductase 74835 dapB 439843000203 dapB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrodipicolinate reductase YP_002113077.1 74014 D 439843 CDS YP_002113080.1 194736367 75520..75663 1 NC_011094.1 hypothetical protein 75663 439843000204 SeSA_A0073 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113080.1 75520 D 439843 CDS YP_002113081.1 194738235 75873..77021 1 NC_011094.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 77021 carA 439843000205 carA Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbamoyl phosphate synthase small subunit YP_002113081.1 75873 D 439843 CDS YP_002113082.1 194735374 77040..80267 1 NC_011094.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80267 carB 439843000206 carB Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbamoyl phosphate synthase large subunit YP_002113082.1 77040 D 439843 CDS YP_008119759.1 513549442 80541..80936 1 NC_011094.1 transcriptional activatory protein CaiF 80936 439843000207 SeSA_A0076 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activatory protein CaiF YP_008119759.1 80541 D 439843 CDS YP_002113083.1 194734318 complement(81013..81609) 1 NC_011094.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 81609 439843000208 SeSA_A0077 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carnitine operon protein CaiE YP_002113083.1 81013 R 439843 CDS YP_002113084.1 194735120 complement(81719..82504) 1 NC_011094.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 82504 439843000209 SeSA_A0078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carnitinyl-CoA dehydratase YP_002113084.1 81719 R 439843 CDS YP_002113085.1 194734469 complement(82558..84111) 1 NC_011094.1 identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase 84111 caiC 439843000210 caiC Salmonella enterica subsp. enterica serovar Schwarzengrund str. crotonobetaine/carnitine-CoA ligase YP_002113085.1 82558 R 439843 CDS YP_002113086.1 194734131 complement(84174..85445) 1 NC_011094.1 'catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine'; crotonobetainyl-CoA:carnitine CoA-transferase 85445 caiB 439843000211 caiB Salmonella enterica subsp. enterica serovar Schwarzengrund str. crotonobetainyl-CoA:carnitine CoA-transferase YP_002113086.1 84174 R 439843 CDS YP_002113087.1 194738236 complement(85503..86645) 1 NC_011094.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 86645 caiA 439843000212 caiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. crotonobetainyl-CoA dehydrogenase YP_002113087.1 85503 R 439843 CDS YP_002113088.1 194737616 complement(86680..88197) 1 NC_011094.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88197 caiT 439843000213 caiT Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-carnitine/gamma-butyrobetaine antiporter YP_002113088.1 86680 R 439843 CDS YP_002113089.1 194737405 88339..88455 1 NC_011094.1 identified by glimmer; hypothetical protein 88455 439843000214 SeSA_A0083 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113089.1 88339 D 439843 CDS YP_002113090.1 194736996 88425..88610 1 NC_011094.1 hypothetical protein 88610 439843000215 SeSA_A0084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113090.1 88425 D 439843 CDS YP_002113091.1 194737337 88678..89448 1 NC_011094.1 'required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase'; electron transfer flavoprotein FixA 89448 fixA 439843000216 fixA Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein FixA YP_002113091.1 88678 D 439843 CDS YP_002113092.1 194738218 89464..90405 1 NC_011094.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 90405 fixB 439843000217 fixB Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein FixB YP_002113092.1 89464 D 439843 CDS YP_002113093.1 194734230 90455..91741 1 NC_011094.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 91741 fixC 439843000218 fixC Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase FixC YP_002113093.1 90455 D 439843 CDS YP_002113094.1 194734964 91738..92025 1 NC_011094.1 4Fe-4S ferredoxin 92025 439843000219 SeSA_A0088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4Fe-4S ferredoxin YP_002113094.1 91738 D 439843 CDS YP_002113095.1 194735488 92106..93512 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 93512 439843000220 SeSA_A0089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. metabolite transport protein YaaU YP_002113095.1 92106 D 439843 CDS YP_002113096.1 194736265 93601..93831 1 NC_011094.1 identified by match to protein family HMM PF06004; hypothetical protein 93831 439843000221 SeSA_A0090 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113096.1 93601 D 439843 CDS YP_002113097.1 194736735 94125..94547 1 NC_011094.1 hypothetical protein 94547 439843000222 SeSA_A0091 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113097.1 94125 D 439843 CDS YP_002113098.1 194736269 complement(94551..94667) 1 NC_011094.1 identified by glimmer; hypothetical protein 94667 439843000223 SeSA_A0092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113098.1 94551 R 439843 CDS YP_002113099.1 194734678 complement(94771..95061) 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 95061 439843000224 SeSA_A0093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113099.1 94771 R 439843 CDS YP_002113100.1 194735205 95959..97848 1 NC_011094.1 identified by match to protein family HMM PF00884; match to protein family HMM TIGR01409; sulfatase 97848 439843000225 SeSA_A0094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfatase YP_002113100.1 95959 D 439843 CDS YP_002113101.1 194735745 98402..98932 1 NC_011094.1 'Required for full activity of KefC, a potassium-proton antiporter'; glutathione-regulated potassium-efflux system ancillary protein KefF 98932 kefF 439843000226 kefF Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-regulated potassium-efflux system ancillary protein KefF YP_002113101.1 98402 D 439843 CDS YP_002113102.1 194737490 98925..100787 1 NC_011094.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 100787 439843000227 SeSA_A0096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-regulated potassium-efflux system protein KefC YP_002113102.1 98925 D 439843 CDS YP_002113103.1 194736837 complement(100784..100909) 1 NC_011094.1 identified by glimmer; hypothetical protein 100909 439843000228 SeSA_A0097 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113103.1 100784 R 439843 CDS YP_002113104.1 194738108 100986..101465 1 NC_011094.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 101465 folA 439843000229 folA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrofolate reductase YP_002113104.1 100986 D 439843 CDS YP_002113105.1 194734768 complement(101573..102421) 1 NC_011094.1 'hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP'; diadenosine tetraphosphatase 102421 apaH 439843000230 apaH Salmonella enterica subsp. enterica serovar Schwarzengrund str. diadenosine tetraphosphatase YP_002113105.1 101573 R 439843 CDS YP_002113106.1 194734186 complement(102432..102809) 1 NC_011094.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 102809 apaG 439843000231 apaG Salmonella enterica subsp. enterica serovar Schwarzengrund str. ApaG protein YP_002113106.1 102432 R 439843 CDS YP_002113107.1 194734867 complement(102812..103633) 1 NC_011094.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 103633 ksgA 439843000232 ksgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dimethyladenosine transferase YP_002113107.1 102812 R 439843 CDS YP_002113108.1 194735540 complement(103630..104619) 1 NC_011094.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 104619 pdxA 439843000233 pdxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxythreonine-4-phosphate dehydrogenase YP_002113108.1 103630 R 439843 CDS YP_002113109.1 194736155 complement(104619..105905) 1 NC_011094.1 'Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB'; peptidyl-prolyl cis-trans isomerase SurA 105905 surA 439843000234 surA Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase SurA YP_002113109.1 104619 R 439843 CDS YP_002113110.1 194736733 complement(105959..108313) 1 NC_011094.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 108313 imp 439843000235 imp Salmonella enterica subsp. enterica serovar Schwarzengrund str. organic solvent tolerance protein YP_002113110.1 105959 R 439843 CDS YP_002113111.1 194737271 complement(108323..108484) 1 NC_011094.1 identified by glimmer; hypothetical protein 108484 439843000236 SeSA_A0105 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113111.1 108323 R 439843 CDS YP_002113112.1 194738079 108567..109379 1 NC_011094.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 109379 djlA 439843000237 djlA Salmonella enterica subsp. enterica serovar Schwarzengrund str. Dna-J like membrane chaperone protein YP_002113112.1 108567 D 439843 CDS YP_002113113.1 194737390 complement(109474..110133) 1 NC_011094.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 110133 439843000238 SeSA_A0107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA/tRNA pseudouridine synthase A YP_002113113.1 109474 R 439843 CDS YP_002113114.1 194738085 complement(110145..113051) 1 NC_011094.1 'transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA'; ATP-dependent helicase HepA 113051 rapA 439843000239 rapA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent helicase HepA YP_002113114.1 110145 R 439843 CDS YP_002113115.1 194737454 complement(113225..115576) 1 NC_011094.1 'Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C'; DNA polymerase II 115576 439843000240 SeSA_A0109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase II YP_002113115.1 113225 R 439843 CDS YP_002113116.1 194734850 complement(115620..116240) 1 NC_011094.1 identified by match to protein family HMM PF02698; hypothetical protein 116240 439843000241 SeSA_A0110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113116.1 115620 R 439843 CDS YP_002113117.1 194734238 116731..117177 1 NC_011094.1 hypothetical protein 117177 439843000242 SeSA_A0111 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113117.1 116731 D 439843 CDS YP_002113118.1 194736172 complement(117183..117878) 1 NC_011094.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 117878 araD 439843000243 araD Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-ribulose-5-phosphate 4-epimerase YP_002113118.1 117183 R 439843 CDS YP_002113119.1 194735397 complement(118019..119521) 1 NC_011094.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 119521 araA 439843000244 araA Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-arabinose isomerase YP_002113119.1 118019 R 439843 CDS YP_002113120.1 194737246 complement(119532..121241) 1 NC_011094.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 121241 araB 439843000245 araB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribulokinase YP_002113120.1 119532 R 439843 CDS YP_002113121.1 194736475 121582..122427 1 NC_011094.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 122427 439843000246 SeSA_A0115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator AraC YP_002113121.1 121582 D 439843 CDS YP_002113122.1 194736775 122546..123313 1 NC_011094.1 identified by match to protein family HMM PF09335; hypothetical protein 123313 439843000247 SeSA_A0116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113122.1 122546 D 439843 CDS YP_002113123.1 194736321 complement(123352..124059) 1 NC_011094.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 124059 thiQ 439843000248 thiQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine transporter ATP-binding subunit YP_002113123.1 123352 R 439843 CDS YP_002113124.1 194738044 complement(124043..125653) 1 NC_011094.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 125653 thiP 439843000249 thiP Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine transporter membrane protein YP_002113124.1 124043 R 439843 CDS YP_002113125.1 194737519 complement(125629..126612) 1 NC_011094.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 126612 tbpA 439843000250 tbpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine transporter substrate binding subunit YP_002113125.1 125629 R 439843 CDS YP_002113126.1 194734268 complement(126657..126776) 1 NC_011094.1 lipoprotein 126776 439843000251 SeSA_A0121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002113126.1 126657 R 439843 CDS YP_002113127.1 194735782 complement(126790..128448) 1 NC_011094.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 128448 sgrR 439843000252 sgrR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator SgrR YP_002113127.1 126790 R 439843 CDS YP_002113128.1 194735132 128815..128928 1 NC_011094.1 identified by glimmer; hypothetical protein 128928 439843000254 SeSA_A0125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113128.1 128815 D 439843 CDS YP_002113129.1 194737348 complement(128949..129554) 1 NC_011094.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 129554 leuD 439843000255 leuD Salmonella enterica subsp. enterica serovar Schwarzengrund str. isopropylmalate isomerase small subunit YP_002113129.1 128949 R 439843 CDS YP_002113130.1 194737865 complement(129565..130965) 1 NC_011094.1 'dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate'; isopropylmalate isomerase large subunit 130965 leuC 439843000256 leuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. isopropylmalate isomerase large subunit YP_002113130.1 129565 R 439843 CDS YP_002113131.1 194738219 complement(130968..132059) 1 NC_011094.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 132059 leuB 439843000257 leuB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-isopropylmalate dehydrogenase YP_002113131.1 130968 R 439843 CDS YP_002113132.1 194737001 complement(132059..133630) 1 NC_011094.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 133630 leuA 439843000258 leuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-isopropylmalate synthase YP_002113132.1 132059 R 439843 CDS YP_002113133.1 194735367 134462..135406 1 NC_011094.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 135406 leuO 439843000259 leuO Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine transcriptional activator YP_002113133.1 134462 D 439843 CDS YP_002113134.1 194735986 135698..137452 1 NC_011094.1 'catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive'; acetolactate synthase 3 catalytic subunit 137452 ilvI 439843000260 ilvI Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase 3 catalytic subunit YP_002113134.1 135698 D 439843 CDS YP_002113135.1 194734361 137452..137961 1 NC_011094.1 'with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit'; acetolactate synthase 3 regulatory subunit 137961 ilvH 439843000261 ilvH Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase 3 regulatory subunit YP_002113135.1 137452 D 439843 CDS YP_002113136.1 194734558 138228..139232 1 NC_011094.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 139232 fruR 439843000262 fruR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator FruR YP_002113136.1 138228 D 439843 CDS YP_002113137.1 194734682 139839..140297 1 NC_011094.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 140297 mraZ 439843000263 mraZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein MraZ YP_002113137.1 139839 D 439843 CDS YP_002113138.1 194735661 140299..141240 1 NC_011094.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 141240 mraW 439843000264 mraW Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-adenosyl-methyltransferase MraW YP_002113138.1 140299 D 439843 CDS YP_002113139.1 194737711 141237..141602 1 NC_011094.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141602 ftsL 439843000265 ftsL Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsL YP_002113139.1 141237 D 439843 CDS YP_002113140.1 194734823 141618..143384 1 NC_011094.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 143384 ftsI 439843000266 ftsI Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidoglycan synthetase FtsI YP_002113140.1 141618 D 439843 CDS YP_002113141.1 194737109 143371..144858 1 NC_011094.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 144858 murE 439843000267 murE Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002113141.1 143371 D 439843 CDS YP_002113142.1 194736510 144855..146213 1 NC_011094.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146213 murF 439843000268 murF Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_002113142.1 144855 D 439843 CDS YP_002113143.1 194735332 146207..147289 1 NC_011094.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 147289 mraY 439843000269 mraY Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002113143.1 146207 D 439843 CDS YP_002113144.1 194736856 147292..148608 1 NC_011094.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 148608 murD 439843000270 murD Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002113144.1 147292 D 439843 CDS YP_002113145.1 194735690 148608..149852 1 NC_011094.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 149852 ftsW 439843000271 ftsW Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsW YP_002113145.1 148608 D 439843 CDS YP_002113146.1 194735154 149849..150916 1 NC_011094.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 150916 murG 439843000272 murG Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_002113146.1 149849 D 439843 CDS YP_002113147.1 194734645 151035..152510 1 NC_011094.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 152510 murC 439843000273 murC Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylmuramate--L-alanine ligase YP_002113147.1 151035 D 439843 CDS YP_002113148.1 194734683 152503..153423 1 NC_011094.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 153423 ddl 439843000274 ddl Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanine--D-alanine ligase YP_002113148.1 152503 D 439843 CDS YP_002113149.1 194738119 153425..154255 1 NC_011094.1 involved in septum formation; cell division protein FtsQ 154255 ftsQ 439843000275 ftsQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsQ YP_002113149.1 153425 D 439843 CDS YP_002113150.1 194734257 154252..155514 1 NC_011094.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 155514 ftsA 439843000276 ftsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsA YP_002113150.1 154252 D 439843 CDS YP_002113151.1 194737199 155576..156727 1 NC_011094.1 'GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function'; cell division protein FtsZ 156727 ftsZ 439843000277 ftsZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsZ YP_002113151.1 155576 D 439843 CDS YP_002113152.1 194737789 156828..157745 1 NC_011094.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 157745 lpxC 439843000278 lpxC Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002113152.1 156828 D 439843 CDS YP_008119760.1 513549391 158024..158521 1 NC_011094.1 SecA regulator protein SecM 158521 secM 439843000279 secM Salmonella enterica subsp. enterica serovar Schwarzengrund str. SecA regulator protein SecM YP_008119760.1 158024 D 439843 CDS YP_002113153.1 194737221 158583..161288 1 NC_011094.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 161288 secA 439843000280 secA Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecA YP_002113153.1 158583 D 439843 CDS YP_002113154.1 194734637 161440..161835 1 NC_011094.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 161835 439843000281 SeSA_A0153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside triphosphate pyrophosphohydrolase YP_002113154.1 161440 D 439843 CDS YP_002113155.1 194734113 complement(162150..162341) 1 NC_011094.1 identified by match to protein family HMM PF03884; zinc-binding protein 162341 439843000283 SeSA_A0155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc-binding protein YP_002113155.1 162150 R 439843 CDS YP_002113156.1 194737200 complement(162351..163094) 1 NC_011094.1 identified by match to protein family HMM PF07072; hypothetical protein 163094 439843000284 SeSA_A0156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113156.1 162351 R 439843 CDS YP_002113157.1 194734613 complement(163094..163714) 1 NC_011094.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 163714 coaE 439843000285 coaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. dephospho-CoA kinase YP_002113157.1 163094 R 439843 CDS YP_002113158.1 194734146 163940..164983 1 NC_011094.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 164983 guaC 439843000286 guaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. guanosine 5'-monophosphate oxidoreductase YP_002113158.1 163940 D 439843 CDS YP_002113159.1 194735161 complement(165014..166216) 1 NC_011094.1 identified by match to protein family HMM PF00482; type IV pilin biogenesis protein 166216 439843000287 SeSA_A0159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type IV pilin biogenesis protein YP_002113159.1 165014 R 439843 CDS YP_002113160.1 194734628 complement(166206..167591) 1 NC_011094.1 identified by match to protein family HMM PF00437; hypothetical protein 167591 439843000288 SeSA_A0160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113160.1 166206 R 439843 CDS YP_002113161.1 194736433 complement(167601..168038) 1 NC_011094.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit 168038 439843000289 SeSA_A0161 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major pilin subunit YP_002113161.1 167601 R 439843 CDS YP_002113162.1 194735829 complement(168260..169153) 1 NC_011094.1 'catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide'; quinolinate phosphoribosyltransferase 169153 nadC 439843000290 nadC Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinolinate phosphoribosyltransferase YP_002113162.1 168260 R 439843 CDS YP_002113163.1 194737050 169241..169804 1 NC_011094.1 identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 169804 439843000291 SeSA_A0163 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetyl-anhydromuranmyl-L-alanine amidase YP_002113163.1 169241 D 439843 CDS YP_002113164.1 194736560 169801..170655 1 NC_011094.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 170655 439843000292 SeSA_A0164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein AmpE YP_002113164.1 169801 D 439843 CDS YP_002113165.1 194738303 complement(170747..171697) 1 NC_011094.1 identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase 171697 439843000293 SeSA_A0165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-N-arabinofuranosidase YP_002113165.1 170747 R 439843 CDS YP_002113166.1 194735199 complement(171697..173103) 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; Na+/galactoside symporter 173103 439843000294 SeSA_A0167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Na+/galactoside symporter YP_002113166.1 171697 R 439843 CDS YP_002113167.1 194734559 173057..173182 1 NC_011094.1 identified by glimmer; hypothetical protein 173182 439843000295 SeSA_A0166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113167.1 173057 D 439843 CDS YP_002113168.1 194733932 complement(173267..174637) 1 NC_011094.1 identified by match to protein family HMM PF00324; aromatic amino acid transporter 174637 439843000296 SeSA_A0168 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aromatic amino acid transporter YP_002113168.1 173267 R 439843 CDS YP_002113169.1 194735964 174846..174968 1 NC_011094.1 identified by glimmer; hypothetical protein 174968 439843000297 SeSA_A0169 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113169.1 174846 D 439843 CDS YP_002113170.1 194735186 175203..175967 1 NC_011094.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 175967 pdhR 439843000298 pdhR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator PdhR YP_002113170.1 175203 D 439843 CDS YP_002113171.1 194737204 176127..178790 1 NC_011094.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 178790 aceE 439843000299 aceE Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate dehydrogenase subunit E1 YP_002113171.1 176127 D 439843 CDS YP_002113172.1 194736485 178805..180691 1 NC_011094.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 180691 aceF 439843000300 aceF Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrolipoamide acetyltransferase YP_002113172.1 178805 D 439843 CDS YP_002113173.1 194737352 180891..182315 1 NC_011094.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 182315 lpdA 439843000301 lpdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrolipoamide dehydrogenase YP_002113173.1 180891 D 439843 CDS YP_002113174.1 194737736 182402..182521 1 NC_011094.1 identified by glimmer; hypothetical protein 182521 439843000302 SeSA_A0174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113174.1 182402 D 439843 CDS YP_002113175.1 194734086 182604..182888 1 NC_011094.1 hypothetical protein 182888 439843000303 SeSA_A0175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113175.1 182604 D 439843 CDS YP_002113176.1 194738164 complement(182926..183717) 1 NC_011094.1 hypothetical protein 183717 439843000304 SeSA_A0176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113176.1 182926 R 439843 CDS YP_002113177.1 194734781 complement(183730..185325) 1 NC_011094.1 outer membrane protein 185325 439843000305 SeSA_A0177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002113177.1 183730 R 439843 CDS YP_002113178.1 194735261 185714..188311 1 NC_011094.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 188311 acnB 439843000306 acnB Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002113178.1 185714 D 439843 CDS YP_002113179.1 194735821 188500..188862 1 NC_011094.1 identified by match to protein family HMM PF06062; hypothetical protein 188862 439843000307 SeSA_A0179 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113179.1 188500 D 439843 CDS YP_002113180.2 449306275 189096..190049 1 NC_011094.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 190049 439843000308 SeSA_A0180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-keto-3-deoxygluconate permease YP_002113180.2 189096 D 439843 CDS YP_002113181.1 194737373 190046..191317 1 NC_011094.1 identified by match to protein family HMM PF07005; hypothetical protein 191317 439843000309 SeSA_A0181 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113181.1 190046 D 439843 CDS YP_002113182.1 194737808 191307..192290 1 NC_011094.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 192290 pdxA 439843000310 pdxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxythreonine-4-phosphate dehydrogenase YP_002113182.1 191307 D 439843 CDS YP_002113183.1 194738300 192300..193067 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR-family transcriptional regulator 193067 439843000311 SeSA_A0183 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DeoR-family transcriptional regulator YP_002113183.1 192300 D 439843 CDS YP_002113184.1 194734260 complement(193097..193891) 1 NC_011094.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 193891 speD 439843000312 speD Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-adenosylmethionine decarboxylase YP_002113184.1 193097 R 439843 CDS YP_002113185.1 194735446 complement(193912..194772) 1 NC_011094.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 194772 speE 439843000313 speE Salmonella enterica subsp. enterica serovar Schwarzengrund str. spermidine synthase YP_002113185.1 193912 R 439843 CDS YP_002113186.1 194735570 complement(194879..195226) 1 NC_011094.1 hypothetical protein 195226 439843000314 SeSA_A0186 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113186.1 194879 R 439843 CDS YP_002113187.1 194735559 195428..197038 1 NC_011094.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 197038 439843000315 SeSA_A0187 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multicopper oxidase YP_002113187.1 195428 D 439843 CDS YP_002113188.1 194736062 complement(197116..199506) 1 NC_011094.1 identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase 199506 gcd 439843000316 gcd Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinoprotein glucose dehydrogenase YP_002113188.1 197116 R 439843 CDS YP_002113189.1 194736226 199712..200248 1 NC_011094.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 200248 hpt 439843000317 hpt Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypoxanthine phosphoribosyltransferase YP_002113189.1 199712 D 439843 CDS YP_002113190.1 194736989 complement(200306..200968) 1 NC_011094.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 200968 439843000318 SeSA_A0190 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbonic anhydrase YP_002113190.1 200306 R 439843 CDS YP_002113191.1 194738046 201077..202003 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 202003 439843000319 SeSA_A0191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113191.1 201077 D 439843 CDS YP_002113192.1 194734862 202000..202770 1 NC_011094.1 identified by match to protein family HMM PF01061; ABC transporter permease 202770 439843000320 SeSA_A0192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002113192.1 202000 D 439843 CDS YP_002113193.1 194735553 complement(202888..203964) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein precurosr 203964 439843000321 SeSA_A0193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein precurosr YP_002113193.1 202888 R 439843 CDS YP_002113194.1 194736076 complement(203973..206519) 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 206519 439843000322 SeSA_A0194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein FimD YP_002113194.1 203973 R 439843 CDS YP_002113195.1 194736071 complement(206546..207229) 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 207229 439843000323 SeSA_A0195 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein FimC YP_002113195.1 206546 R 439843 CDS YP_002113196.1 194738133 complement(207277..207828) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 207828 439843000324 SeSA_A0196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113196.1 207277 R 439843 CDS YP_002113197.1 194737954 207941..208069 1 NC_011094.1 identified by glimmer; hypothetical protein 208069 439843000325 SeSA_A0197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113197.1 207941 D 439843 CDS YP_002113198.1 194736710 208194..208634 1 NC_011094.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 208634 439843000326 SeSA_A0198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system transporter subunit IIA YP_002113198.1 208194 D 439843 CDS YP_002113199.1 194734707 208696..209925 1 NC_011094.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 209925 439843000327 SeSA_A0199 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide deacetylase YP_002113199.1 208696 D 439843 CDS YP_002113200.1 194737507 complement(209932..210312) 1 NC_011094.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 210312 panD 439843000328 panD Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate alpha-decarboxylase YP_002113200.1 209932 R 439843 CDS YP_002113201.1 194735896 complement(210407..211261) 1 NC_011094.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 211261 panC 439843000329 panC Salmonella enterica subsp. enterica serovar Schwarzengrund str. pantoate--beta-alanine ligase YP_002113201.1 210407 R 439843 CDS YP_002113202.1 194734780 complement(211387..212181) 1 NC_011094.1 'catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate'; 3-methyl-2-oxobutanoate hydroxymethyltransferase 212181 panB 439843000330 panB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002113202.1 211387 R 439843 CDS YP_002113203.1 194735484 complement(212303..213571) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial-like adhesin protein 213571 439843000331 SeSA_A0203 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial-like adhesin protein YP_002113203.1 212303 R 439843 CDS YP_002113204.1 194736130 complement(213593..214156) 1 NC_011094.1 identified by match to protein family HMM PF00419; hypothetical protein 214156 439843000332 SeSA_A0204 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113204.1 213593 R 439843 CDS YP_002113205.1 194737713 complement(214189..214797) 1 NC_011094.1 fimbrial protein 214797 439843000333 SeSA_A0205 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113205.1 214189 R 439843 CDS YP_002113206.1 194737258 complement(214812..215336) 1 NC_011094.1 fimbrial protein 215336 439843000334 SeSA_A0206 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113206.1 214812 R 439843 CDS YP_002113207.1 194737034 complement(215365..218031) 1 NC_011094.1 similar to the fimbrial usher protein PapC; outer membrane usher protein 218031 439843000335 SeSA_A0207 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein YP_002113207.1 215365 R 439843 CDS YP_002113208.1 194735406 complement(218031..218768) 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein EcpD 218768 439843000336 SeSA_A0208 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein EcpD YP_002113208.1 218031 R 439843 CDS YP_002113209.1 194738168 complement(219034..219627) 1 NC_011094.1 identified by match to protein family HMM PF00419; pilin chaperone ecpD2 219627 439843000337 SeSA_A0209 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pilin chaperone ecpD2 YP_002113209.1 219034 R 439843 CDS YP_002113210.1 194734924 219947..220060 1 NC_011094.1 identified by glimmer; hypothetical protein 220060 439843000338 SeSA_A0210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113210.1 219947 D 439843 CDS YP_002113211.1 194736442 complement(220030..220509) 1 NC_011094.1 'catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP'; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 220509 folK 439843000339 folK Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002113211.1 220030 R 439843 CDS YP_002113212.2 449306276 complement(220506..221924) 1 NC_011094.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase 221924 pcnB 439843000340 pcnB Salmonella enterica subsp. enterica serovar Schwarzengrund str. poly(A) polymerase YP_002113212.2 220506 R 439843 CDS YP_002113213.1 194733989 complement(222065..223006) 1 NC_011094.1 'this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu'; glutamyl-Q tRNA(Asp) synthetase 223006 439843000341 SeSA_A0213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamyl-Q tRNA(Asp) synthetase YP_002113213.1 222065 R 439843 CDS YP_002113214.1 194734478 complement(223030..223485) 1 NC_011094.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor 223485 dksA 439843000342 dksA Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase-binding transcription factor YP_002113214.1 223030 R 439843 CDS YP_002113215.1 194736326 complement(223662..224366) 1 NC_011094.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 224366 sfsA 439843000343 sfsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar fermentation stimulation protein A YP_002113215.1 223662 R 439843 CDS YP_002113216.1 194734813 complement(224383..224913) 1 NC_011094.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 224913 439843000344 SeSA_A0216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2'-5' RNA ligase YP_002113216.1 224383 R 439843 CDS YP_002113217.1 194736469 224941..227415 1 NC_011094.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 227415 hrpB 439843000345 hrpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase HrpB YP_002113217.1 224941 D 439843 CDS YP_002113218.1 194738399 227556..230078 1 NC_011094.1 'bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell'; penicillin-binding protein 1b 230078 mrcB 439843000346 mrcB Salmonella enterica subsp. enterica serovar Schwarzengrund str. penicillin-binding protein 1b YP_002113218.1 227556 D 439843 CDS YP_002113219.1 194735647 complement(230217..230357) 1 NC_011094.1 identified by glimmer; hypothetical protein 230357 439843000347 SeSA_A0219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113219.1 230217 R 439843 CDS YP_002113220.1 194735130 230371..232560 1 NC_011094.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 232560 fhuA 439843000348 fhuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrichrome outer membrane transporter YP_002113220.1 230371 D 439843 CDS YP_002113221.1 194735854 232609..233406 1 NC_011094.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 233406 fhuC 439843000349 fhuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-hydroxamate transporter ATP-binding subunit YP_002113221.1 232609 D 439843 CDS YP_002113222.1 194735158 233406..234296 1 NC_011094.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 234296 439843000350 SeSA_A0222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-hydroxamate transporter substrate-binding subunit YP_002113222.1 233406 D 439843 CDS YP_002113223.1 194734815 234293..236350 1 NC_011094.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 236350 439843000351 SeSA_A0223 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-hydroxamate transporter permease subunit YP_002113223.1 234293 D 439843 CDS YP_002113224.1 194734166 complement(236441..237721) 1 NC_011094.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 237721 hemL 439843000352 hemL Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate-1-semialdehyde aminotransferase YP_002113224.1 236441 R 439843 CDS YP_002113225.1 194735314 237891..239312 1 NC_011094.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 239312 439843000354 SeSA_A0226 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chloride channel protein YP_002113225.1 237891 D 439843 CDS YP_002113226.1 194738261 239394..239738 1 NC_011094.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 239738 yadR 439843000355 yadR Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-sulfur cluster insertion protein ErpA YP_002113226.1 239394 D 439843 CDS YP_002113227.1 194737595 complement(239839..240462) 1 NC_011094.1 identified by match to protein family HMM PF03458; hypothetical protein 240462 439843000356 SeSA_A0228 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113227.1 239839 R 439843 CDS YP_002113228.1 194737235 complement(240499..241287) 1 NC_011094.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 241287 439843000357 SeSA_A0229 Salmonella enterica subsp. enterica serovar Schwarzengrund str. vitamin B12-transporter protein BtuF YP_002113228.1 240499 R 439843 CDS YP_002113229.1 194736622 complement(241292..241990) 1 NC_011094.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 241990 mtnN 439843000358 mtnN Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002113229.1 241292 R 439843 CDS YP_002113230.1 194737262 242075..243592 1 NC_011094.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 243592 dgt 439843000359 dgt Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyguanosinetriphosphate triphosphohydrolase YP_002113230.1 242075 D 439843 CDS YP_002113231.1 194736645 243722..245149 1 NC_011094.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 245149 degP 439843000360 degP Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine endoprotease YP_002113231.1 243722 D 439843 CDS YP_002113232.1 194735751 245302..246459 1 NC_011094.1 'regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization'; carbohydrate diacid transcriptional activator CdaR 246459 cdaR 439843000361 cdaR Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbohydrate diacid transcriptional activator CdaR YP_002113232.1 245302 D 439843 CDS YP_002113233.1 194735270 complement(246581..249550) 1 NC_011094.1 identified by match to protein family HMM PF03272; viral enhancin protein 249550 439843000362 SeSA_A0234 Salmonella enterica subsp. enterica serovar Schwarzengrund str. viral enhancin protein YP_002113233.1 246581 R 439843 CDS YP_002113234.1 194734722 complement(249736..250122) 1 NC_011094.1 hypothetical protein 250122 439843000363 SeSA_A0235 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113234.1 249736 R 439843 CDS YP_002113235.1 194734221 250369..251670 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; shikimate transporter 251670 439843000364 SeSA_A0236 Salmonella enterica subsp. enterica serovar Schwarzengrund str. shikimate transporter YP_002113235.1 250369 D 439843 CDS YP_002113236.1 194736150 complement(251707..252531) 1 NC_011094.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 252531 dapD 439843000365 dapD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002113236.1 251707 R 439843 CDS YP_002113237.1 194736783 complement(252561..255233) 1 NC_011094.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 255233 glnD 439843000366 glnD Salmonella enterica subsp. enterica serovar Schwarzengrund str. PII uridylyl-transferase YP_002113237.1 252561 R 439843 CDS YP_002113238.1 194734840 complement(255471..256265) 1 NC_011094.1 'catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn'; methionine aminopeptidase 256265 map 439843000367 map Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionine aminopeptidase YP_002113238.1 255471 R 439843 CDS YP_002113239.1 194735516 256716..257441 1 NC_011094.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 257441 rpsB 439843000369 rpsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S2 YP_002113239.1 256716 D 439843 CDS YP_002113240.1 194734151 257699..258550 1 NC_011094.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 258550 tsf 439843000370 tsf Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor Ts YP_002113240.1 257699 D 439843 CDS YP_002113241.1 194734775 258695..259420 1 NC_011094.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 259420 pyrH 439843000371 pyrH Salmonella enterica subsp. enterica serovar Schwarzengrund str. uridylate kinase YP_002113241.1 258695 D 439843 CDS YP_002113242.1 194737420 259567..260124 1 NC_011094.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 260124 frr 439843000372 frr Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome recycling factor YP_002113242.1 259567 D 439843 CDS YP_002113243.2 449306277 260266..261462 1 NC_011094.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 261462 dxr 439843000373 dxr Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002113243.2 260266 D 439843 CDS YP_002113244.1 194736697 261775..262533 1 NC_011094.1 catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 262533 uppS 439843000374 uppS Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP pyrophosphate synthase YP_002113244.1 261775 D 439843 CDS YP_002113245.1 194734738 262546..263403 1 NC_011094.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 263403 cdsA 439843000375 cdsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. CDP-diglyceride synthase YP_002113245.1 262546 D 439843 CDS YP_002113246.1 194735257 263415..264767 1 NC_011094.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 264767 rseP 439843000376 rseP Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc metallopeptidase RseP YP_002113246.1 263415 D 439843 CDS YP_002113247.1 194734363 264799..267231 1 NC_011094.1 'part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins'; outer membrane protein assembly factor YaeT 267231 yaeT 439843000377 yaeT Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein assembly factor YaeT YP_002113247.1 264799 D 439843 CDS YP_002113248.1 194734829 267354..267839 1 NC_011094.1 identified by match to protein family HMM PF03938; periplasmic chaperone 267839 skp 439843000378 skp Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic chaperone YP_002113248.1 267354 D 439843 CDS YP_002113249.1 194737345 267843..268868 1 NC_011094.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 268868 lpxD 439843000379 lpxD Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002113249.1 267843 D 439843 CDS YP_002113250.1 194738401 268974..269429 1 NC_011094.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 269429 fabZ 439843000380 fabZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. (3R)-hydroxymyristoyl-ACP dehydratase YP_002113250.1 268974 D 439843 CDS YP_002113251.1 194736191 269433..270221 1 NC_011094.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 270221 lpxA 439843000381 lpxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylglucosamine acyltransferase YP_002113251.1 269433 D 439843 CDS YP_002113252.1 194736847 270221..271369 1 NC_011094.1 'catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM'; lipid-A-disaccharide synthase 271369 lpxB 439843000382 lpxB Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid-A-disaccharide synthase YP_002113252.1 270221 D 439843 CDS YP_002113253.1 194734669 271366..271962 1 NC_011094.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 271962 rnhB 439843000383 rnhB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease HII YP_002113253.1 271366 D 439843 CDS YP_002113254.1 194737870 271986..275468 1 NC_011094.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 275468 dnaE 439843000384 dnaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit alpha YP_002113254.1 271986 D 439843 CDS YP_002113255.1 194735685 275481..276440 1 NC_011094.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 276440 accA 439843000385 accA Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002113255.1 275481 D 439843 CDS YP_002113257.1 194735478 278445..280586 1 NC_011094.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 280586 439843000387 SeSA_A0261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine decarboxylase, constitutive YP_002113257.1 278445 D 439843 CDS YP_002113258.1 194737685 280642..281031 1 NC_011094.1 identified by match to protein family HMM PF00903; hypothetical protein 281031 439843000388 SeSA_A0262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113258.1 280642 D 439843 CDS YP_002113259.1 194738177 281094..282386 1 NC_011094.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 282386 tilS 439843000389 tilS Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA(Ile)-lysidine synthetase YP_002113259.1 281094 D 439843 CDS YP_002113260.2 449306278 complement(282470..282730) 1 NC_011094.1 identified by match to protein family HMM PF07073; Rho-binding antiterminator 282730 rof 439843000390 rof Salmonella enterica subsp. enterica serovar Schwarzengrund str. Rho-binding antiterminator YP_002113260.2 282470 R 439843 CDS YP_002113261.1 194737176 complement(282717..282917) 1 NC_011094.1 identified by match to protein family HMM PF06786; hypothetical protein 282917 439843000391 SeSA_A0265 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113261.1 282717 R 439843 CDS YP_002113262.1 194735093 283115..283660 1 NC_011094.1 identified by match to protein family HMM PF07152; hypothetical protein 283660 439843000392 SeSA_A0266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113262.1 283115 D 439843 CDS YP_002113263.1 194736606 283657..284079 1 NC_011094.1 identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 284079 439843000393 SeSA_A0267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-tRNA hydrolase domain-containing protein YP_002113263.1 283657 D 439843 CDS YP_002113264.1 194735528 284111..284812 1 NC_011094.1 identified by match to protein family HMM PF04170; copper homeostasis and adhesion lipoprotein 284812 439843000394 SeSA_A0268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper homeostasis and adhesion lipoprotein YP_002113264.1 284111 D 439843 CDS YP_002113265.1 194735941 complement(284886..286604) 1 NC_011094.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 286604 proS 439843000395 proS Salmonella enterica subsp. enterica serovar Schwarzengrund str. prolyl-tRNA synthetase YP_002113265.1 284886 R 439843 CDS YP_002113266.1 194734251 complement(286715..287455) 1 NC_011094.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 287455 439843000396 SeSA_A0270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113266.1 286715 R 439843 CDS YP_002113267.2 449306279 complement(287419..287823) 1 NC_011094.1 exopolysaccharide synthesis regulator RcsF 287823 rcsF 439843000397 rcsF Salmonella enterica subsp. enterica serovar Schwarzengrund str. exopolysaccharide synthesis regulator RcsF YP_002113267.2 287419 R 439843 CDS YP_002113268.1 194736374 complement(287942..288757) 1 NC_011094.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit 288757 metQ 439843000398 metQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. DL-methionine transporter substrate-binding subunit YP_002113268.1 287942 R 439843 CDS YP_002113269.1 194737676 complement(288796..289449) 1 NC_011094.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease 289449 metI 439843000399 metI Salmonella enterica subsp. enterica serovar Schwarzengrund str. DL-methionine transporter permease YP_002113269.1 288796 R 439843 CDS YP_002113270.1 194735955 complement(289442..290473) 1 NC_011094.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 290473 metN 439843000400 metN Salmonella enterica subsp. enterica serovar Schwarzengrund str. DL-methionine transporter ATP-binding subunit YP_002113270.1 289442 R 439843 CDS YP_002113271.1 194736696 290663..291229 1 NC_011094.1 'Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate'; D,D-heptose 1,7-bisphosphate phosphatase 291229 439843000401 SeSA_A0275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D,D-heptose 1,7-bisphosphate phosphatase YP_002113271.1 290663 D 439843 CDS YP_002113272.1 194737949 297054..297878 1 NC_011094.1 'catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid'; 2,5-diketo-D-gluconate reductase B 297878 dkgB 439843000409 dkgB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,5-diketo-D-gluconate reductase B YP_002113272.1 297054 D 439843 CDS YP_002113273.1 194737606 complement(297900..298814) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 298814 439843000410 SeSA_A0286 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002113273.1 297900 R 439843 CDS YP_002113274.1 194738242 298919..300094 1 NC_011094.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 300094 439843000411 SeSA_A0287 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YdhP YP_002113274.1 298919 D 439843 CDS YP_002113275.1 194734062 300226..301026 1 NC_011094.1 identified by match to protein family HMM PF03372; hypothetical protein 301026 439843000412 SeSA_A0288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113275.1 300226 D 439843 CDS YP_002113276.1 194734206 301104..301874 1 NC_011094.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family protein 301874 439843000413 SeSA_A0289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase, UbiE/COQ5 family protein YP_002113276.1 301104 D 439843 CDS YP_002113277.2 449306280 complement(301930..303297) 1 NC_011094.1 'catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall'; membrane-bound lytic murein transglycosylase D 303297 mltD 439843000414 mltD Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane-bound lytic murein transglycosylase D YP_002113277.2 301930 R 439843 CDS YP_002113278.1 194736047 complement(303369..304124) 1 NC_011094.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 304124 gloB 439843000415 gloB Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyacylglutathione hydrolase YP_002113278.1 303369 R 439843 CDS YP_002113279.1 194735250 304159..304881 1 NC_011094.1 identified by match to protein family HMM PF08241; methyltransferase 304881 439843000416 SeSA_A0292 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002113279.1 304159 D 439843 CDS YP_002113280.1 194736767 complement(304878..305345) 1 NC_011094.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 305345 rnhA 439843000417 rnhA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease H YP_002113280.1 304878 R 439843 CDS YP_002113281.1 194736138 305400..306140 1 NC_011094.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 306140 dnaQ 439843000418 dnaQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit epsilon YP_002113281.1 305400 D 439843 CDS YP_002113282.1 194736484 complement(306670..307713) 1 NC_011094.1 identified by match to protein family HMM PF06812; ImpA-related N- family protein 307713 439843000420 SeSA_A0296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ImpA-related N- family protein YP_002113282.1 306670 R 439843 CDS YP_002113283.1 194736246 complement(307730..308725) 1 NC_011094.1 identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; type VI secretion protein, family protein 308725 439843000421 SeSA_A0297 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein, family protein YP_002113283.1 307730 R 439843 CDS YP_002113284.1 194736842 complement(308722..310605) 1 NC_011094.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; type VI secretion protein, family protein 310605 vasA 439843000422 vasA Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein, family protein YP_002113284.1 308722 R 439843 CDS YP_002113285.1 194737470 complement(310621..311115) 1 NC_011094.1 identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357; type VI secretion system lysozyme-like protein 311115 439843000423 SeSA_A0299 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion system lysozyme-like protein YP_002113285.1 310621 R 439843 CDS YP_002113286.1 194738070 complement(311112..311936) 1 NC_011094.1 identified by match to protein family HMM PF07024; SciE protein 311936 439843000424 SeSA_A0300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SciE protein YP_002113286.1 311112 R 439843 CDS YP_002113287.1 194734411 complement(311923..312813) 1 NC_011094.1 hypothetical protein 312813 439843000425 SeSA_A0301 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113287.1 311923 R 439843 CDS YP_002113288.1 194734926 complement(312896..313033) 1 NC_011094.1 identified by glimmer; hypothetical protein 313033 439843000426 SeSA_A0302 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113288.1 312896 R 439843 CDS YP_002113289.1 194734614 313193..315856 1 NC_011094.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; type VI secretion ATPase, ClpV1 family protein 315856 clpV 439843000427 clpV Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion ATPase, ClpV1 family protein YP_002113289.1 313193 D 439843 CDS YP_002113290.1 194735383 315942..316232 1 NC_011094.1 hypothetical protein 316232 439843000428 SeSA_A0304 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113290.1 315942 D 439843 CDS YP_002113291.1 194734723 316294..316836 1 NC_011094.1 identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358; type VI secretion protein, family protein 316836 439843000429 SeSA_A0305 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein, family protein YP_002113291.1 316294 D 439843 CDS YP_002113292.1 194736373 316860..318368 1 NC_011094.1 identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355; type VI secretion protein, EvpB/family protein 318368 439843000430 SeSA_A0306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein, EvpB/family protein YP_002113292.1 316860 D 439843 CDS YP_002113293.1 194735722 318720..319001 1 NC_011094.1 hypothetical protein 319001 439843000431 SeSA_A0307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113293.1 318720 D 439843 CDS YP_002113294.1 194734344 319255..319740 1 NC_011094.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 319740 439843000432 SeSA_A0308 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin-coregulated protein YP_002113294.1 319255 D 439843 CDS YP_002113295.1 194735014 320034..320519 1 NC_011094.1 hypothetical protein 320519 439843000433 SeSA_A0309 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113295.1 320034 D 439843 CDS YP_002113296.1 194734402 320516..320887 1 NC_011094.1 hypothetical protein 320887 439843000434 SeSA_A0310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113296.1 320516 D 439843 CDS YP_002113297.1 194734020 321030..321515 1 NC_011094.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hemolysin-coregulated protein 321515 439843000435 SeSA_A0311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin-coregulated protein YP_002113297.1 321030 D 439843 CDS YP_002113298.1 194736056 321627..322118 1 NC_011094.1 identified by match to protein family HMM TIGR03352; type VI secretion lipoprotein, family protein 322118 439843000436 SeSA_A0312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion lipoprotein, family protein YP_002113298.1 321627 D 439843 CDS YP_002113299.1 194735441 322122..323465 1 NC_011094.1 identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353; type VI secretion protein, family protein 323465 439843000437 SeSA_A0313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein, family protein YP_002113299.1 322122 D 439843 CDS YP_002113300.1 194736479 323462..324766 1 NC_011094.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350; hypothetical protein 324766 439843000438 SeSA_A0314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113300.1 323462 D 439843 CDS YP_002113301.1 194737075 324771..325544 1 NC_011094.1 hypothetical protein 325544 439843000439 SeSA_A0315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113301.1 324771 D 439843 CDS YP_002113302.1 194738351 326189..330058 1 NC_011094.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348; type VI secretion protein IcmF 330058 icmF 439843000441 icmF Salmonella enterica subsp. enterica serovar Schwarzengrund str. type VI secretion protein IcmF YP_002113302.1 326189 D 439843 CDS YP_002113303.1 194733908 330058..330840 1 NC_011094.1 hypothetical protein 330840 439843000442 SeSA_A0319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113303.1 330058 D 439843 CDS YP_002113304.1 194737231 330837..331676 1 NC_011094.1 hypothetical protein 331676 439843000443 SeSA_A0320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113304.1 330837 D 439843 CDS YP_002113305.1 194737681 331666..331926 1 NC_011094.1 hypothetical protein 331926 439843000444 SeSA_A0321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113305.1 331666 D 439843 CDS YP_002113306.1 194735863 332051..334243 1 NC_011094.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361; Rhs-family protein 334243 439843000445 SeSA_A0322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Rhs-family protein YP_002113306.1 332051 D 439843 CDS YP_002113307.1 194735948 334267..334713 1 NC_011094.1 identified by match to protein family HMM PF08786; hypothetical protein 334713 439843000446 SeSA_A0323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113307.1 334267 D 439843 CDS YP_002113308.1 194737344 338692..338826 1 NC_011094.1 identified by glimmer; hypothetical protein 338826 439843000448 SeSA_A0325 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113308.1 338692 D 439843 CDS YP_002113309.1 194736791 338804..339250 1 NC_011094.1 hypothetical protein 339250 439843000449 SeSA_A0326 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113309.1 338804 D 439843 CDS YP_002113310.1 194737173 339426..339566 1 NC_011094.1 identified by glimmer; hypothetical protein 339566 439843000450 SeSA_A0327 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113310.1 339426 D 439843 CDS YP_002113311.1 194736156 339769..340251 1 NC_011094.1 phosphotriesterase 340251 439843000451 SeSA_A0328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotriesterase YP_002113311.1 339769 D 439843 CDS YP_002113312.1 194736352 complement(341337..341516) 1 NC_011094.1 hypothetical protein 341516 439843000452 SeSA_A0332 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113312.1 341337 R 439843 CDS YP_002113313.1 194738229 complement(341784..341924) 1 NC_011094.1 hypothetical protein 341924 439843000453 SeSA_A0333 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113313.1 341784 R 439843 CDS YP_002113314.1 194737400 343099..343224 1 NC_011094.1 identified by glimmer; hypothetical protein 343224 439843000455 SeSA_A0335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113314.1 343099 D 439843 CDS YP_003475885.1 289472797 343169..343663 1 NC_011094.1 spora coat assembly protein SafA 343663 safA 439843000456 safA Salmonella enterica subsp. enterica serovar Schwarzengrund str. spora coat assembly protein SafA YP_003475885.1 343169 D 439843 CDS YP_002113316.1 194734343 343747..344484 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pilus assembly chaperone 344484 439843000457 SeSA_A0337 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pilus assembly chaperone YP_002113316.1 343747 D 439843 CDS YP_002113317.1 194736639 344508..347018 1 NC_011094.1 identified by match to protein family HMM PF00577; outer-membrane fimbrial usher protein 347018 439843000458 SeSA_A0338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer-membrane fimbrial usher protein YP_002113317.1 344508 D 439843 CDS YP_002113318.1 194736030 347040..347510 1 NC_011094.1 identified by match to protein family HMM PF05775; fimbrial structural subunit 347510 439843000459 SeSA_A0339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial structural subunit YP_002113318.1 347040 D 439843 CDS YP_002113319.1 194737619 347917..348738 1 NC_011094.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 348738 439843000460 SeSA_A0340 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide deacetylase YP_002113319.1 347917 D 439843 CDS YP_002113320.1 194736448 349221..349352 1 NC_011094.1 TnpA protein 349352 439843000461 SeSA_A0341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TnpA protein YP_002113320.1 349221 D 439843 CDS YP_002113321.1 194734026 349555..350502 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR-family transcriptional regulator SinR 350502 439843000462 SeSA_A0342 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR-family transcriptional regulator SinR YP_002113321.1 349555 D 439843 CDS YP_002113322.1 194734828 352648..353358 1 NC_011094.1 fimbrial protein 353358 439843000463 SeSA_A0345 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113322.1 352648 D 439843 CDS YP_002113323.1 194736253 353409..353984 1 NC_011094.1 identified by match to protein family HMM PF04449; CS1 type fimbrial major subunit 353984 439843000464 SeSA_A0346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CS1 type fimbrial major subunit YP_002113323.1 353409 D 439843 CDS YP_002113324.1 194738117 354093..356780 1 NC_011094.1 TcfC protein 356780 439843000465 SeSA_A0347 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TcfC protein YP_002113324.1 354093 D 439843 CDS YP_002113325.1 194736089 356802..357851 1 NC_011094.1 identified by match to protein family HMM PF07434; fimbrial protein 357851 439843000466 SeSA_A0348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113325.1 356802 D 439843 CDS YP_002113326.1 194736841 357984..358439 1 NC_011094.1 identified by match to protein family HMM PF01037; transcriptional regulator 358439 439843000467 SeSA_A0349 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002113326.1 357984 D 439843 CDS YP_002113327.1 194734778 complement(358483..358602) 1 NC_011094.1 identified by glimmer; hypothetical protein 358602 439843000468 SeSA_A0351 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113327.1 358483 R 439843 CDS YP_002113328.1 194734427 358579..359196 1 NC_011094.1 hypothetical protein 359196 439843000469 SeSA_A0350 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113328.1 358579 D 439843 CDS YP_002113329.1 194734513 359575..359733 1 NC_011094.1 identified by glimmer; hypothetical protein 359733 439843000470 SeSA_A0352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113329.1 359575 D 439843 CDS YP_002113330.1 194734154 complement(359962..360114) 1 NC_011094.1 hypothetical protein 360114 439843000471 SeSA_A0353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113330.1 359962 R 439843 CDS YP_002113331.1 194734644 complement(360160..360879) 1 NC_011094.1 adhesin 360879 439843000472 SeSA_A0354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. adhesin YP_002113331.1 360160 R 439843 CDS YP_002113332.1 194734169 complement(361022..361210) 1 NC_011094.1 identified by glimmer; hypothetical protein 361210 439843000473 SeSA_A0355 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113332.1 361022 R 439843 CDS YP_002113333.1 194735824 complement(361203..361610) 1 NC_011094.1 identified by match to protein family HMM PF07813; hypothetical protein 361610 439843000474 SeSA_A0356 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113333.1 361203 R 439843 CDS YP_002113334.1 194735054 complement(361920..362687) 1 NC_011094.1 identified by match to protein family HMM PF00795; hypothetical protein 362687 439843000475 SeSA_A0357 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113334.1 361920 R 439843 CDS YP_002113335.1 194737297 complement(362796..365240) 1 NC_011094.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 365240 fadE 439843000476 fadE Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA dehydrogenase YP_002113335.1 362796 R 439843 CDS YP_002113336.1 194736690 365479..366057 1 NC_011094.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 366057 gmhA 439843000477 gmhA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoheptose isomerase YP_002113336.1 365479 D 439843 CDS YP_002113337.1 194737580 366270..367037 1 NC_011094.1 identified by match to protein family HMM PF00310; glutamine amidotransferase, class II 367037 439843000478 SeSA_A0360 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine amidotransferase, class II YP_002113337.1 366270 D 439843 CDS YP_002113338.1 194738370 complement(367008..367748) 1 NC_011094.1 identified by match to protein family HMM PF06104; hypothetical protein 367748 439843000479 SeSA_A0361 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113338.1 367008 R 439843 CDS YP_002113339.1 194735550 367998..369053 1 NC_011094.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 369053 439843000480 SeSA_A0362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase IV YP_002113339.1 367998 D 439843 CDS YP_002113340.1 194736029 369272..370411 1 NC_011094.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 370411 439843000481 SeSA_A0363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113340.1 369272 D 439843 CDS YP_002113341.1 194735122 370408..371022 1 NC_011094.1 similar to release factor 1 and 2; peptide chain release factor-like protein 371022 prfH 439843000482 prfH Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide chain release factor-like protein YP_002113341.1 370408 D 439843 CDS YP_002113342.1 194735633 complement(371178..372635) 1 NC_011094.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 372635 pepD 439843000483 pepD Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoacyl-histidine dipeptidase YP_002113342.1 371178 R 439843 CDS YP_002113343.1 194734973 372884..373342 1 NC_011094.1 'catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively'; xanthine-guanine phosphoribosyltransferase 373342 gpt 439843000484 gpt Salmonella enterica subsp. enterica serovar Schwarzengrund str. xanthine-guanine phosphoribosyltransferase YP_002113343.1 372884 D 439843 CDS YP_002113344.1 194735361 373431..374675 1 NC_011094.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 374675 frsA 439843000485 frsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. fermentation/respiration switch protein YP_002113344.1 373431 D 439843 CDS YP_002113345.1 194738232 374733..375134 1 NC_011094.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 375134 439843000486 SeSA_A0368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator Crl YP_002113345.1 374733 D 439843 CDS YP_002113346.1 194734082 complement(375185..376237) 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E 376237 439843000487 SeSA_A0369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane phosphoporin protein E YP_002113346.1 375185 R 439843 CDS YP_002113347.1 194736959 complement(376303..376455) 1 NC_011094.1 hypothetical protein 376455 439843000488 SeSA_A0370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113347.1 376303 R 439843 CDS YP_002113348.1 194737323 376520..377623 1 NC_011094.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 377623 proB 439843000489 proB Salmonella enterica subsp. enterica serovar Schwarzengrund str. gamma-glutamyl kinase YP_002113348.1 376520 D 439843 CDS YP_002113349.1 194736743 377635..378885 1 NC_011094.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 378885 proA 439843000490 proA Salmonella enterica subsp. enterica serovar Schwarzengrund str. gamma-glutamyl phosphate reductase YP_002113349.1 377635 D 439843 CDS YP_002113350.1 194737537 379241..380431 1 NC_011094.1 identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family protein 380431 439843000492 SeSA_A0374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. site-specific recombinase, phage integrase family protein YP_002113350.1 379241 D 439843 CDS YP_002113351.1 194736902 380428..381252 1 NC_011094.1 identified by glimmer; hypothetical protein 381252 439843000493 SeSA_A0375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113351.1 380428 D 439843 CDS YP_002113352.1 194736440 complement(381705..381839) 1 NC_011094.1 hypothetical protein 381839 439843000494 SeSA_A0376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113352.1 381705 R 439843 CDS YP_002113353.1 194737928 382009..382185 1 NC_011094.1 phage immunity repressor protein 382185 439843000495 SeSA_A0377 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage immunity repressor protein YP_002113353.1 382009 D 439843 CDS YP_002113354.1 194737408 382178..382537 1 NC_011094.1 identified by glimmer; hypothetical protein 382537 439843000496 SeSA_A0378 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113354.1 382178 D 439843 CDS YP_002113355.1 194735364 382569..382853 1 NC_011094.1 identified by glimmer; hypothetical protein 382853 439843000497 SeSA_A0379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113355.1 382569 D 439843 CDS YP_002113356.1 194735032 382850..383233 1 NC_011094.1 hypothetical protein 383233 439843000498 SeSA_A0380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113356.1 382850 D 439843 CDS YP_002113357.1 194736337 383230..385902 1 NC_011094.1 identified by match to protein family HMM PF01751; match to protein family HMM PF08273; hypothetical protein 385902 439843000499 SeSA_A0381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113357.1 383230 D 439843 CDS YP_002113358.1 194736034 complement(385963..386181) 1 NC_011094.1 identified by glimmer; hypothetical protein 386181 439843000500 SeSA_A0382 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113358.1 385963 R 439843 CDS YP_002113359.1 194736434 386302..387063 1 NC_011094.1 capsid morphogenesis protein encoded in CP-933I 387063 439843000501 SeSA_A0383 Salmonella enterica subsp. enterica serovar Schwarzengrund str. capsid morphogenesis protein encoded in CP-933I YP_002113359.1 386302 D 439843 CDS YP_002113360.1 194735982 387114..387335 1 NC_011094.1 identified by match to protein family HMM PF04606; activator encoded in prophage CP-933I 387335 439843000502 SeSA_A0384 Salmonella enterica subsp. enterica serovar Schwarzengrund str. activator encoded in prophage CP-933I YP_002113360.1 387114 D 439843 CDS YP_002113361.1 194736139 complement(387522..387644) 1 NC_011094.1 identified by glimmer; hypothetical protein 387644 439843000503 SeSA_A0385 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113361.1 387522 R 439843 CDS YP_002113362.1 194735280 387675..388658 1 NC_011094.1 identified by match to protein family HMM PF00004; ATPase AAA 388658 439843000504 SeSA_A0386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATPase AAA YP_002113362.1 387675 D 439843 CDS YP_002113363.1 194736756 388677..391121 1 NC_011094.1 Y4bN protein 391121 439843000505 SeSA_A0387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Y4bN protein YP_002113363.1 388677 D 439843 CDS YP_002113364.1 194737054 391509..391703 1 NC_011094.1 outer membrane protein 391703 439843000506 SeSA_A0388 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002113364.1 391509 D 439843 CDS YP_002113365.1 194736580 complement(391751..392509) 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein 392509 439843000507 SeSA_A0389 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial chaperone protein YP_002113365.1 391751 R 439843 CDS YP_002113366.1 194738316 complement(392475..393800) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial usher 393800 439843000508 SeSA_A0390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial usher YP_002113366.1 392475 R 439843 CDS YP_002113367.1 194737801 complement(393805..396366) 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein 396366 439843000509 SeSA_A0391 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane fimbrial usher protein YP_002113367.1 393805 R 439843 CDS YP_002113368.2 449306281 complement(396350..397111) 1 NC_011094.1 identified by match to protein family HMM PF00345; fimbrial chaperone protein 397111 439843000510 SeSA_A0392 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial chaperone protein YP_002113368.2 396350 R 439843 CDS YP_003494840.1 290241785 complement(397173..397709) 1 NC_011094.1 fimbrial protein major subunit 397709 stbA 439843000511 stbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein major subunit YP_003494840.1 397173 R 439843 CDS YP_002113370.1 194734895 398373..399107 1 NC_011094.1 transmembrane regulator 399107 439843000512 SeSA_A0394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transmembrane regulator YP_002113370.1 398373 D 439843 CDS YP_002113371.1 194737904 399080..399580 1 NC_011094.1 hypothetical protein 399580 439843000513 SeSA_A0395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113371.1 399080 D 439843 CDS YP_002113372.1 194736853 399917..401467 1 NC_011094.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 401467 439843000514 SeSA_A0396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002113372.1 399917 D 439843 CDS YP_002113373.1 194735095 401567..402310 1 NC_011094.1 identified by match to protein family HMM PF00486; response regulator 402310 439843000515 SeSA_A0397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator YP_002113373.1 401567 D 439843 CDS YP_002113374.1 194735944 402283..402771 1 NC_011094.1 hypothetical protein 402771 439843000516 SeSA_A0398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113374.1 402283 D 439843 CDS YP_002113375.1 194734078 403173..403697 1 NC_011094.1 identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 403697 439843000517 SeSA_A0399 Salmonella enterica subsp. enterica serovar Schwarzengrund str. attachment invasion locus protein YP_002113375.1 403173 D 439843 CDS YP_002113376.1 194737661 403841..404482 1 NC_011094.1 response regulator 404482 439843000518 SeSA_A0400 Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator YP_002113376.1 403841 D 439843 CDS YP_002113377.1 194738191 404493..404717 1 NC_011094.1 hypothetical protein 404717 439843000519 SeSA_A0401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113377.1 404493 D 439843 CDS YP_002113378.1 194736695 404751..405134 1 NC_011094.1 cytochrome c type biogenesis protein CycH 405134 439843000520 SeSA_A0402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c type biogenesis protein CycH YP_002113378.1 404751 D 439843 CDS YP_002113379.1 194737220 complement(405202..406659) 1 NC_011094.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane protein OprM 406659 439843000521 SeSA_A0403 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein OprM YP_002113379.1 405202 R 439843 CDS YP_002113380.1 194737679 complement(406676..409843) 1 NC_011094.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; OqxB 409843 439843000522 SeSA_A0404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. OqxB YP_002113380.1 406676 R 439843 CDS YP_002113381.1 194736646 complement(409840..411066) 1 NC_011094.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; auxiliary transport protein, membrane fusion protein (MFP) family protein 411066 439843000523 SeSA_A0405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. auxiliary transport protein, membrane fusion protein (MFP) family protein YP_002113381.1 409840 R 439843 CDS YP_002113382.1 194737259 411343..413631 1 NC_011094.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 413631 439843000524 SeSA_A0406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper-translocating P-type ATPase YP_002113382.1 411343 D 439843 CDS YP_002113383.1 194737609 413643..414107 1 NC_011094.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 414107 cueR 439843000525 cueR Salmonella enterica subsp. enterica serovar Schwarzengrund str. Cu(I)-responsive transcriptional regulator YP_002113383.1 413643 D 439843 CDS YP_002113384.1 194738268 414185..414379 1 NC_011094.1 identified by match to protein family HMM PF00403; hypothetical protein 414379 439843000526 SeSA_A0408 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113384.1 414185 D 439843 CDS YP_002113385.1 194734657 414671..415924 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 415924 439843000527 SeSA_A0409 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator superfamily protein YP_002113385.1 414671 D 439843 CDS YP_002113386.1 194735291 416113..418071 1 NC_011094.1 identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 418071 439843000528 SeSA_A0410 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III restriction-modification system StyLTI enzyme mod YP_002113386.1 416113 D 439843 CDS YP_002113387.1 194735729 418084..421053 1 NC_011094.1 identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 421053 439843000529 SeSA_A0411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III restriction-modification system StyLTI enzyme res YP_002113387.1 418084 D 439843 CDS YP_002113388.1 194736276 421548..422951 1 NC_011094.1 identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 422951 439843000530 SeSA_A0412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome bd-II oxidase subunit 1 YP_002113388.1 421548 D 439843 CDS YP_002113389.1 194737263 422948..423958 1 NC_011094.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 423958 cydB 439843000531 cydB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome D ubiquinol oxidase subunit II YP_002113389.1 422948 D 439843 CDS YP_002113390.1 194735086 423958..424089 1 NC_011094.1 hypothetical protein 424089 439843000532 SeSA_A0414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113390.1 423958 D 439843 CDS YP_002113391.1 194735807 424296..425300 1 NC_011094.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 425300 439843000533 SeSA_A0415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. araC family transcriptional regulator YP_002113391.1 424296 D 439843 CDS YP_002113392.1 194735072 425464..427554 1 NC_011094.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 427554 439843000534 SeSA_A0416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrichrome-iron receptor YP_002113392.1 425464 D 439843 CDS YP_002113393.1 194735554 complement(427595..428227) 1 NC_011094.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transporter 428227 439843000535 SeSA_A0417 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002113393.1 427595 R 439843 CDS YP_002113394.1 194734893 428459..428734 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 428734 439843000536 SeSA_A0418 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113394.1 428459 D 439843 CDS YP_002113395.1 194734203 complement(428870..430495) 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR02329; propionate catabolism operon regulatory protein PrpR 430495 prpR 439843000537 prpR Salmonella enterica subsp. enterica serovar Schwarzengrund str. propionate catabolism operon regulatory protein PrpR YP_002113395.1 428870 R 439843 CDS YP_002113396.1 194738063 430761..431648 1 NC_011094.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 431648 prpB 439843000538 prpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-methylisocitrate lyase YP_002113396.1 430761 D 439843 CDS YP_002113397.1 194737491 431759..432928 1 NC_011094.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 432928 prpC 439843000539 prpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. methylcitrate synthase YP_002113397.1 431759 D 439843 CDS YP_002113398.1 194736852 432968..434419 1 NC_011094.1 'functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C'; 2-methylcitrate dehydratase 434419 prpD 439843000540 prpD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-methylcitrate dehydratase YP_002113398.1 432968 D 439843 CDS YP_002113399.1 194736206 434460..436346 1 NC_011094.1 'catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent'; propionyl-CoA synthetase 436346 prpE 439843000541 prpE Salmonella enterica subsp. enterica serovar Schwarzengrund str. propionyl-CoA synthetase YP_002113399.1 434460 D 439843 CDS YP_002113400.1 194737612 complement(436450..437424) 1 NC_011094.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 437424 hemB 439843000542 hemB Salmonella enterica subsp. enterica serovar Schwarzengrund str. delta-aminolevulinic acid dehydratase YP_002113400.1 436450 R 439843 CDS YP_002113401.1 194735645 437644..437757 1 NC_011094.1 identified by glimmer; hypothetical protein 437757 439843000543 SeSA_A0425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113401.1 437644 D 439843 CDS YP_002113402.1 194734121 complement(437754..437870) 1 NC_011094.1 identified by glimmer; hypothetical protein 437870 439843000544 SeSA_A0426 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113402.1 437754 R 439843 CDS YP_002113403.1 194735140 437937..440948 1 NC_011094.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter/pertactin 440948 439843000545 SeSA_A0427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. autotransporter/pertactin YP_002113403.1 437937 D 439843 CDS YP_008119761.1 513549437 441034..441657 1 NC_011094.1 transcriptional regulator 441657 439843000546 SeSA_A0428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_008119761.1 441034 D 439843 CDS YP_002113404.1 194734112 complement(441702..442859) 1 NC_011094.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 442859 439843000547 SeSA_A0429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-lactam binding protein AmpH YP_002113404.1 441702 R 439843 CDS YP_002113405.1 194737631 443206..444426 1 NC_011094.1 'in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope'; transporter 444426 smbA 439843000548 smbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002113405.1 443206 D 439843 CDS YP_002113406.1 194737237 444441..445535 1 NC_011094.1 identified by match to protein family HMM PF07759; outer membrane lipoprotein 445535 439843000549 SeSA_A0431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002113406.1 444441 D 439843 CDS YP_002113407.1 194736620 complement(445573..445881) 1 NC_011094.1 hypothetical protein 445881 439843000550 SeSA_A0432 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113407.1 445573 R 439843 CDS YP_002113408.1 194735710 446149..446364 1 NC_011094.1 hypothetical protein 446364 439843000551 SeSA_A0433 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113408.1 446149 D 439843 CDS YP_002113409.1 194735047 complement(446390..447484) 1 NC_011094.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 447484 ddl 439843000552 ddl Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-alanine synthetase A YP_002113409.1 446390 R 439843 CDS YP_002113410.1 194737281 447592..448275 1 NC_011094.1 identified by match to protein family HMM PF06904; extensin family protein 448275 439843000553 SeSA_A0435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. extensin family protein YP_002113410.1 447592 D 439843 CDS YP_002113411.1 194736766 448444..449655 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 449655 439843000554 SeSA_A0436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator superfamily protein YP_002113411.1 448444 D 439843 CDS YP_002113412.1 194735119 449952..450212 1 NC_011094.1 hypothetical protein 450212 439843000555 SeSA_A0437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113412.1 449952 D 439843 CDS YP_002113413.1 194735504 complement(450219..450398) 1 NC_011094.1 identified by glimmer; hypothetical protein 450398 439843000556 SeSA_A0438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113413.1 450219 R 439843 CDS YP_002113414.1 194736123 450565..450885 1 NC_011094.1 identified by match to protein family HMM PF07769; hypothetical protein 450885 439843000557 SeSA_A0439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113414.1 450565 D 439843 CDS YP_002113415.1 194734843 450977..452089 1 NC_011094.1 'catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis'; diguanylate cyclase AdrA 452089 adrA 439843000558 adrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. diguanylate cyclase AdrA YP_002113415.1 450977 D 439843 CDS YP_002113416.1 194737572 complement(452104..452913) 1 NC_011094.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 452913 proC 439843000559 proC Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyrroline-5-carboxylate reductase YP_002113416.1 452104 R 439843 CDS YP_002113417.1 194738292 452947..453096 1 NC_011094.1 identified by glimmer; hypothetical protein 453096 439843000560 SeSA_A0442 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113417.1 452947 D 439843 CDS YP_002113418.1 194736550 453053..453508 1 NC_011094.1 identified by match to protein family HMM PF02639; hypothetical protein 453508 439843000561 SeSA_A0443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113418.1 453053 D 439843 CDS YP_002113419.1 194735163 453693..454238 1 NC_011094.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 454238 aroL 439843000562 aroL Salmonella enterica subsp. enterica serovar Schwarzengrund str. shikimate kinase YP_002113419.1 453693 D 439843 CDS YP_002113420.1 194738188 454265..454456 1 NC_011094.1 hypothetical protein 454456 439843000563 SeSA_A0445 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113420.1 454265 D 439843 CDS YP_002113421.1 194737922 454707..455384 1 NC_011094.1 identified by match to protein family HMM PF07302; hypothetical protein 455384 439843000564 SeSA_A0446 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113421.1 454707 D 439843 CDS YP_002113422.1 194737440 455455..455739 1 NC_011094.1 identified by match to protein family HMM PF06865; hypothetical protein 455739 439843000565 SeSA_A0447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113422.1 455455 D 439843 CDS YP_002113423.1 194736892 complement(455777..456688) 1 NC_011094.1 Required for efficient pilin antigenic variation; recombination associated protein 456688 rdgC 439843000566 rdgC Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination associated protein YP_002113423.1 455777 R 439843 CDS YP_002113424.1 194736419 456814..457722 1 NC_011094.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 457722 439843000567 SeSA_A0449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructokinase YP_002113424.1 456814 D 439843 CDS YP_002113425.1 194734130 complement(457742..458968) 1 NC_011094.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 458968 439843000568 SeSA_A0450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MFS transport protein AraJ YP_002113425.1 457742 R 439843 CDS YP_002113426.1 194735358 complement(459087..462227) 1 NC_011094.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC 462227 439843000569 SeSA_A0451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease SbcC YP_002113426.1 459087 R 439843 CDS YP_002113427.1 194734879 complement(462224..463426) 1 NC_011094.1 'with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity'; exonuclease SbcD 463426 439843000570 SeSA_A0452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease SbcD YP_002113427.1 462224 R 439843 CDS YP_002113428.1 194736716 463641..464330 1 NC_011094.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 464330 phoB 439843000571 phoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator PhoB YP_002113428.1 463641 D 439843 CDS YP_002113429.1 194737079 464400..465695 1 NC_011094.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 465695 phoR 439843000572 phoR Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate regulon sensor protein YP_002113429.1 464400 D 439843 CDS YP_002113430.1 194735187 complement(465908..466057) 1 NC_011094.1 hypothetical protein 466057 439843000573 SeSA_A0456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113430.1 465908 R 439843 CDS YP_002113431.1 194735402 466104..467423 1 NC_011094.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 467423 brnQ 439843000574 brnQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. branched-chain amino acid transport system II carrier protein YP_002113431.1 466104 D 439843 CDS YP_002113432.1 194738258 467438..468868 1 NC_011094.1 'cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation'; proline-specific permease 468868 proY 439843000575 proY Salmonella enterica subsp. enterica serovar Schwarzengrund str. proline-specific permease YP_002113432.1 467438 D 439843 CDS YP_002113433.1 194736653 469030..470847 1 NC_011094.1 identified by match to protein family HMM PF00128; maltodextrin glucosidase 470847 439843000576 SeSA_A0459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltodextrin glucosidase YP_002113433.1 469030 D 439843 CDS YP_002113434.1 194737766 complement(470919..471521) 1 NC_011094.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 471521 439843000577 SeSA_A0460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peroxiredoxin-2 YP_002113434.1 470919 R 439843 CDS YP_002113435.1 194738382 complement(471731..472312) 1 NC_011094.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase 472312 acpH 439843000578 acpH Salmonella enterica subsp. enterica serovar Schwarzengrund str. ACP phosphodieterase YP_002113435.1 471731 R 439843 CDS YP_002113436.1 194733996 472406..473470 1 NC_011094.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 473470 queA 439843000579 queA Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_002113436.1 472406 D 439843 CDS YP_002113437.1 194734633 473457..473603 1 NC_011094.1 hypothetical protein 473603 439843000580 SeSA_A0463 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113437.1 473457 D 439843 CDS YP_002113438.1 194736894 473667..474794 1 NC_011094.1 'Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)'; queuine tRNA-ribosyltransferase 474794 tgt 439843000581 tgt Salmonella enterica subsp. enterica serovar Schwarzengrund str. queuine tRNA-ribosyltransferase YP_002113438.1 473667 D 439843 CDS YP_002113439.1 194736494 474817..475149 1 NC_011094.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 475149 yajC 439843000582 yajC Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit YajC YP_002113439.1 474817 D 439843 CDS YP_002113440.1 194734472 475177..477024 1 NC_011094.1 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane'; preprotein translocase subunit SecD 477024 secD 439843000583 secD Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecD YP_002113440.1 475177 D 439843 CDS YP_002113441.1 194738306 477035..478006 1 NC_011094.1 'forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF'; preprotein translocase subunit SecF 478006 secF 439843000584 secF Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecF YP_002113441.1 477035 D 439843 CDS YP_002113443.1 194737828 478100..478447 1 NC_011094.1 identified by match to protein family HMM PF01844; hypothetical protein 478447 439843000585 SeSA_A0468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113443.1 478100 D 439843 CDS YP_002113444.1 194738167 complement(479076..479939) 1 NC_011094.1 identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx 479939 439843000586 SeSA_A0471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside-specific channel-forming protein tsx YP_002113444.1 479076 R 439843 CDS YP_002113445.1 194735789 complement(480127..480264) 1 NC_011094.1 identified by glimmer; hypothetical protein 480264 439843000587 SeSA_A0472 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113445.1 480127 R 439843 CDS YP_002113446.1 194735276 complement(480239..480736) 1 NC_011094.1 hypothetical protein 480736 439843000588 SeSA_A0473 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113446.1 480239 R 439843 CDS YP_002113447.1 194737190 480811..480957 1 NC_011094.1 identified by glimmer; hypothetical protein 480957 439843000589 SeSA_A0474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113447.1 480811 D 439843 CDS YP_002113448.1 194736356 480930..481379 1 NC_011094.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 481379 nrdR 439843000590 nrdR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator NrdR YP_002113448.1 480930 D 439843 CDS YP_002113449.1 194734520 481383..482486 1 NC_011094.1 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil'; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 482486 ribD 439843000591 ribD Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002113449.1 481383 D 439843 CDS YP_002113450.1 194733994 482575..483045 1 NC_011094.1 'RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not'; 6,7-dimethyl-8-ribityllumazine synthase 483045 ribH 439843000592 ribH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6,7-dimethyl-8-ribityllumazine synthase YP_002113450.1 482575 D 439843 CDS YP_002113451.1 194735835 483066..483485 1 NC_011094.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 483485 nusB 439843000593 nusB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription antitermination protein NusB YP_002113451.1 483066 D 439843 CDS YP_002113452.1 194735325 483564..484541 1 NC_011094.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 484541 thiL 439843000594 thiL Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine monophosphate kinase YP_002113452.1 483564 D 439843 CDS YP_002113453.1 194737031 484528..485034 1 NC_011094.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 485034 pgpA 439843000595 pgpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatidylglycerophosphatase A YP_002113453.1 484528 D 439843 CDS YP_002113454.1 194735834 complement(485138..486112) 1 NC_011094.1 identified by match to protein family HMM PF00248; aryl-alcohol dehydrogenase W 486112 439843000596 SeSA_A0481 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aryl-alcohol dehydrogenase W YP_002113454.1 485138 R 439843 CDS YP_002113455.1 194738296 complement(486169..488031) 1 NC_011094.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 488031 dxs 439843000597 dxs Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1-deoxy-D-xylulose-5-phosphate synthase YP_002113455.1 486169 R 439843 CDS YP_002113456.1 194737792 complement(488055..488954) 1 NC_011094.1 identified by match to protein family HMM PF00348; geranyltranstransferase 488954 ispA 439843000598 ispA Salmonella enterica subsp. enterica serovar Schwarzengrund str. geranyltranstransferase YP_002113456.1 488055 R 439843 CDS YP_002113457.1 194737720 complement(488955..489197) 1 NC_011094.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 489197 xseB 439843000599 xseB Salmonella enterica subsp. enterica serovar Schwarzengrund str. exodeoxyribonuclease VII small subunit YP_002113457.1 488955 R 439843 CDS YP_002113458.1 194735073 489407..490855 1 NC_011094.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 490855 thiI 439843000600 thiI Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine biosynthesis protein ThiI YP_002113458.1 489407 D 439843 CDS YP_002113459.1 194737201 complement(490899..491696) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transporter membrane protein PhnV 491696 phnV 439843000601 phnV Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-aminoethylphosphonate ABC transporter membrane protein PhnV YP_002113459.1 490899 R 439843 CDS YP_002113460.1 194734791 complement(491699..492559) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease 492559 phnU 439843000602 phnU Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-aminoethylphosphonate ABC transporter permease YP_002113460.1 491699 R 439843 CDS YP_002113461.1 194734712 complement(492562..493671) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein 493671 phnT 439843000603 phnT Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_002113461.1 492562 R 439843 CDS YP_002113462.1 194736561 complement(493677..494690) 1 NC_011094.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter substrate-binding protein 494690 phnS 439843000604 phnS Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_002113462.1 493677 R 439843 CDS YP_002113463.1 194738336 complement(494888..495607) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR03337; transcriptional regulator 495607 439843000605 SeSA_A0490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002113463.1 494888 R 439843 CDS YP_002113464.1 194736804 495747..496850 1 NC_011094.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 496850 phnW 439843000606 phnW Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-aminoethylphosphonate--pyruvate transaminase YP_002113464.1 495747 D 439843 CDS YP_002113465.1 194736308 496860..497669 1 NC_011094.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 497669 phnX 439843000607 phnX Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphonoacetaldehyde hydrolase YP_002113465.1 496860 D 439843 CDS YP_002113466.1 194736082 complement(497766..498356) 1 NC_011094.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 498356 439843000608 SeSA_A0493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DJ-1 family protein YP_002113466.1 497766 R 439843 CDS YP_002113467.1 194735581 complement(498319..499230) 1 NC_011094.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 499230 panE 439843000609 panE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-dehydropantoate 2-reductase YP_002113467.1 498319 R 439843 CDS YP_002113468.1 194734638 499356..499847 1 NC_011094.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 499847 439843000610 SeSA_A0495 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleotide-binding protein YP_002113468.1 499356 D 439843 CDS YP_002113469.1 194734000 complement(499894..501258) 1 NC_011094.1 identified by match to protein family HMM PF07690; inner membrane transport protein YajR 501258 439843000611 SeSA_A0496 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YajR YP_002113469.1 499894 R 439843 CDS YP_002113470.1 194737863 complement(501479..502366) 1 NC_011094.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 502366 cyoE 439843000612 cyoE Salmonella enterica subsp. enterica serovar Schwarzengrund str. protoheme IX farnesyltransferase YP_002113470.1 501479 R 439843 CDS YP_002113471.1 194737366 complement(502381..502710) 1 NC_011094.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV 502710 cyoD 439843000613 cyoD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome o ubiquinol oxidase subunit IV YP_002113471.1 502381 R 439843 CDS YP_002113472.1 194736872 complement(502710..503324) 1 NC_011094.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III 503324 cyoC 439843000614 cyoC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome o ubiquinol oxidase subunit III YP_002113472.1 502710 R 439843 CDS YP_002113473.1 194736449 complement(503314..505305) 1 NC_011094.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I 505305 cyoB 439843000615 cyoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome o ubiquinol oxidase subunit I YP_002113473.1 503314 R 439843 CDS YP_002113474.1 194734271 complement(505316..506272) 1 NC_011094.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II 506272 cyoA 439843000616 cyoA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome o ubiquinol oxidase subunit II YP_002113474.1 505316 R 439843 CDS YP_002113475.1 194736077 complement(506519..506641) 1 NC_011094.1 identified by glimmer; hypothetical protein 506641 439843000617 SeSA_A0502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113475.1 506519 R 439843 CDS YP_002113476.1 194737890 complement(506725..508200) 1 NC_011094.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 508200 ampG 439843000618 ampG Salmonella enterica subsp. enterica serovar Schwarzengrund str. muropeptide transporter YP_002113476.1 506725 R 439843 CDS YP_008119762.1 513549438 complement(508244..508876) 1 NC_011094.1 hypothetical protein 508876 439843000619 SeSA_A0504 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119762.1 508244 R 439843 CDS YP_002113477.1 194734965 509126..509443 1 NC_011094.1 'positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress'; transcriptional regulator BolA 509443 439843000620 SeSA_A0505 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator BolA YP_002113477.1 509126 D 439843 CDS YP_002113478.1 194737715 509790..511088 1 NC_011094.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 511088 tig 439843000621 tig Salmonella enterica subsp. enterica serovar Schwarzengrund str. trigger factor YP_002113478.1 509790 D 439843 CDS YP_002113479.1 194734455 511335..511958 1 NC_011094.1 'hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates'; ATP-dependent Clp protease proteolytic subunit 511958 clpP 439843000622 clpP Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent Clp protease proteolytic subunit YP_002113479.1 511335 D 439843 CDS YP_002113480.1 194734820 512209..513480 1 NC_011094.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 513480 clpX 439843000623 clpX Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent protease ATP-binding subunit ClpX YP_002113480.1 512209 D 439843 CDS YP_002113481.1 194735362 513666..516020 1 NC_011094.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 516020 lon 439843000624 lon Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding ATP-dependent protease La YP_002113481.1 513666 D 439843 CDS YP_002113482.1 194735846 516229..516501 1 NC_011094.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 516501 hupB 439843000625 hupB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator HU subunit beta YP_002113482.1 516229 D 439843 CDS YP_002113483.1 194737891 516792..518663 1 NC_011094.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 518663 ppiD 439843000626 ppiD Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase YP_002113483.1 516792 D 439843 CDS YP_002113484.1 194736318 518813..519187 1 NC_011094.1 identified by match to protein family HMM TIGR00426; competence protein ComEA 519187 439843000627 SeSA_A0512 Salmonella enterica subsp. enterica serovar Schwarzengrund str. competence protein ComEA YP_002113484.1 518813 D 439843 CDS YP_002113485.1 194734324 519291..519689 1 NC_011094.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 519689 439843000628 SeSA_A0513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioesterase superfamily protein YP_002113485.1 519291 D 439843 CDS YP_002113486.1 194735041 complement(519797..520492) 1 NC_011094.1 'YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His'; queuosine biosynthesis protein QueC 520492 439843000629 SeSA_A0514 Salmonella enterica subsp. enterica serovar Schwarzengrund str. queuosine biosynthesis protein QueC YP_002113486.1 519797 R 439843 CDS YP_002113487.1 194738291 complement(520557..522257) 1 NC_011094.1 identified by match to protein family HMM PF00496; extracellular solute-binding protein, family 5 522257 439843000630 SeSA_A0515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. extracellular solute-binding protein, family 5 YP_002113487.1 520557 R 439843 CDS YP_002113488.1 194734264 522357..523175 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; protein cof 523175 439843000631 SeSA_A0516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein cof YP_002113488.1 522357 D 439843 CDS YP_002113489.1 194737913 complement(523224..524279) 1 NC_011094.1 identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent protein subunit beta 524279 439843000632 SeSA_A0517 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxal-5'-phosphate-dependent protein subunit beta YP_002113489.1 523224 R 439843 CDS YP_002113490.1 194734165 524392..524850 1 NC_011094.1 identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 524850 439843000633 SeSA_A0518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate uptake regulatory protein YP_002113490.1 524392 D 439843 CDS YP_002113491.1 194736954 524891..526663 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 526663 439843000634 SeSA_A0519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug transporter membrane\ATP-binding components YP_002113491.1 524891 D 439843 CDS YP_002113492.1 194737315 526656..528437 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 528437 439843000635 SeSA_A0520 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug transporter membrane\ATP-binding components YP_002113492.1 526656 D 439843 CDS YP_002113493.1 194736581 528441..528599 1 NC_011094.1 hypothetical protein 528599 439843000636 SeSA_A0521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113493.1 528441 D 439843 CDS YP_002113494.1 194736922 528650..528988 1 NC_011094.1 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.'; nitrogen regulatory protein P-II 2 528988 439843000637 SeSA_A0522 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrogen regulatory protein P-II 2 YP_002113494.1 528650 D 439843 CDS YP_002113495.1 194735341 529020..530306 1 NC_011094.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 530306 amt 439843000638 amt Salmonella enterica subsp. enterica serovar Schwarzengrund str. ammonium transporter YP_002113495.1 529020 D 439843 CDS YP_002113496.1 194736105 complement(530408..531268) 1 NC_011094.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase 531268 tesB 439843000639 tesB Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA thioesterase YP_002113496.1 530408 R 439843 CDS YP_002113497.1 194734986 531483..532052 1 NC_011094.1 lipoprotein 532052 439843000640 SeSA_A0525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002113497.1 531483 D 439843 CDS YP_002113498.1 194735636 complement(532085..532474) 1 NC_011094.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 532474 439843000641 SeSA_A0526 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methylated-DNA-[protein]-cysteine S-methyltransferase YP_002113498.1 532085 R 439843 CDS YP_002113499.1 194734105 complement(532705..534255) 1 NC_011094.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 534255 439843000643 SeSA_A0528 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002113499.1 532705 R 439843 CDS YP_002113500.1 194735774 534480..534740 1 NC_011094.1 'RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 534740 rpmE2 439843000644 rpmE2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L31 YP_002113500.1 534480 D 439843 CDS YP_002113501.1 194737730 534746..534886 1 NC_011094.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 534886 rpmJ 439843000645 rpmJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L36 YP_002113501.1 534746 D 439843 CDS YP_002113502.1 194734753 complement(534942..535412) 1 NC_011094.1 hypothetical protein 535412 439843000646 SeSA_A0531 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113502.1 534942 R 439843 CDS YP_002113503.1 194737874 complement(535530..536081) 1 NC_011094.1 identified by match to protein family HMM PF00132; maltose O-acetyltransferase 536081 439843000647 SeSA_A0532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose O-acetyltransferase YP_002113503.1 535530 R 439843 CDS YP_002113504.1 194738349 complement(536260..536478) 1 NC_011094.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 536478 439843000648 SeSA_A0533 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin expression-modulating protein YP_002113504.1 536260 R 439843 CDS YP_002113505.1 194736974 complement(536506..536880) 1 NC_011094.1 hypothetical protein 536880 439843000649 SeSA_A0534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113505.1 536506 R 439843 CDS YP_002113506.1 194736378 complement(537376..540525) 1 NC_011094.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B 540525 439843000650 SeSA_A0535 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acriflavine resistance protein B YP_002113506.1 537376 R 439843 CDS YP_002113507.1 194735237 complement(540548..541741) 1 NC_011094.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A 541741 acrA 439843000651 acrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. acriflavine resistance protein A YP_002113507.1 540548 R 439843 CDS YP_002113508.1 194734632 541883..542536 1 NC_011094.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 542536 acrR 439843000652 acrR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor AcrR YP_002113508.1 541883 D 439843 CDS YP_002113509.1 194736285 542661..546017 1 NC_011094.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 546017 439843000653 SeSA_A0538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium efflux protein KefA YP_002113509.1 542661 D 439843 CDS YP_002113510.1 194735651 complement(546059..546994) 1 NC_011094.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 546994 439843000654 SeSA_A0539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113510.1 546059 R 439843 CDS YP_002113511.1 194737252 complement(547064..547231) 1 NC_011094.1 hypothetical protein 547231 439843000655 SeSA_A0540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113511.1 547064 R 439843 CDS YP_002113512.1 194736637 complement(547245..547772) 1 NC_011094.1 'PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks'; primosomal replication protein N'' 547772 439843000656 SeSA_A0541 Salmonella enterica subsp. enterica serovar Schwarzengrund str. primosomal replication protein N'' YP_002113512.1 547245 R 439843 CDS YP_002113513.1 194734942 547841..548218 1 NC_011094.1 identified by match to protein family HMM PF04304; hypothetical protein 548218 439843000657 SeSA_A0542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113513.1 547841 D 439843 CDS YP_002113514.1 194734405 548371..548922 1 NC_011094.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 548922 apt 439843000658 apt Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenine phosphoribosyltransferase YP_002113514.1 548371 D 439843 CDS YP_002113515.1 194735928 549036..550964 1 NC_011094.1 'catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA'; DNA polymerase III subunits gamma and tau 550964 dnaX 439843000659 dnaX Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunits gamma and tau YP_002113515.1 549036 D 439843 CDS YP_002113516.1 194735445 551010..551339 1 NC_011094.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 551339 439843000660 SeSA_A0546 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113516.1 551010 D 439843 CDS YP_002113517.1 194735608 551339..551944 1 NC_011094.1 'involved in a recombinational process of DNA repair, independent of the recBC complex'; recombination protein RecR 551944 recR 439843000661 recR Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination protein RecR YP_002113517.1 551339 D 439843 CDS YP_002113518.1 194733973 552055..553929 1 NC_011094.1 molecular chaperone; heat shock protein 90 553929 htpG 439843000662 htpG Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein 90 YP_002113518.1 552055 D 439843 CDS YP_002113519.1 194737401 554281..554925 1 NC_011094.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 554925 adk 439843000664 adk Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylate kinase YP_002113519.1 554281 D 439843 CDS YP_002113520.1 194737077 555153..556115 1 NC_011094.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 556115 hemH 439843000665 hemH Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrochelatase YP_002113520.1 555153 D 439843 CDS YP_002113521.1 194738198 complement(556112..557083) 1 NC_011094.1 identified by match to protein family HMM PF07859; acetyl esterase 557083 439843000666 SeSA_A0552 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl esterase YP_002113521.1 556112 R 439843 CDS YP_002113522.1 194737171 557236..558540 1 NC_011094.1 identified by match to protein family HMM PF00294; inosine kinase 558540 gsk 439843000667 gsk Salmonella enterica subsp. enterica serovar Schwarzengrund str. inosine kinase YP_002113522.1 557236 D 439843 CDS YP_002113523.1 194735414 complement(558589..560265) 1 NC_011094.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein 560265 439843000668 SeSA_A0554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cation:proton antiport protein YP_002113523.1 558589 R 439843 CDS YP_002113524.1 194735078 560343..560468 1 NC_011094.1 identified by glimmer; hypothetical protein 560468 439843000669 SeSA_A0555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113524.1 560343 D 439843 CDS YP_002113525.1 194734415 complement(560480..561700) 1 NC_011094.1 identified by match to protein family HMM PF07690; fosmidomycin resistance protein 561700 fsr 439843000670 fsr Salmonella enterica subsp. enterica serovar Schwarzengrund str. fosmidomycin resistance protein YP_002113525.1 560480 R 439843 CDS YP_002113526.1 194736935 561873..563525 1 NC_011094.1 'catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides'; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 563525 ushA 439843000671 ushA Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_002113526.1 561873 D 439843 CDS YP_002113527.1 194735308 complement(563642..564121) 1 NC_011094.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein 564121 ybaK 439843000672 ybaK Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113527.1 563642 R 439843 CDS YP_002113528.1 194733915 complement(564323..565117) 1 NC_011094.1 identified by match to protein family HMM PF07446; GumN family protein 565117 439843000674 SeSA_A0560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GumN family protein YP_002113528.1 564323 R 439843 CDS YP_002113529.1 194734675 complement(565194..566030) 1 NC_011094.1 hypothetical protein 566030 439843000675 SeSA_A0561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113529.1 565194 R 439843 CDS YP_002113530.1 194737818 complement(566183..568684) 1 NC_011094.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase 568684 copA 439843000676 copA Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper exporting ATPase YP_002113530.1 566183 R 439843 CDS YP_002113531.1 194737943 568794..569210 1 NC_011094.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 569210 cueR 439843000677 cueR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator CueR YP_002113531.1 568794 D 439843 CDS YP_002113532.1 194737061 complement(569211..569663) 1 NC_011094.1 identified by match to protein family HMM PF01957; hypothetical protein 569663 439843000678 SeSA_A0564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113532.1 569211 R 439843 CDS YP_002113533.1 194735607 complement(569660..570577) 1 NC_011094.1 identified by match to protein family HMM PF01145; hypothetical protein 570577 439843000679 SeSA_A0565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113533.1 569660 R 439843 CDS YP_002113534.1 194735306 570724..571401 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 571401 439843000680 SeSA_A0566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113534.1 570724 D 439843 CDS YP_002113535.1 194735833 571388..572167 1 NC_011094.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 572167 439843000681 SeSA_A0567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113535.1 571388 D 439843 CDS YP_002113536.1 194734988 complement(572253..573134) 1 NC_011094.1 identified by match to protein family HMM PF00085; thioredoxin domain-containing protein 573134 439843000682 SeSA_A0568 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioredoxin domain-containing protein YP_002113536.1 572253 R 439843 CDS YP_002113537.1 194734331 complement(573167..573937) 1 NC_011094.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 573937 439843000683 SeSA_A0569 Salmonella enterica subsp. enterica serovar Schwarzengrund str. short chain dehydrogenase YP_002113537.1 573167 R 439843 CDS YP_002113538.1 194738202 complement(574092..574706) 1 NC_011094.1 identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 574706 439843000684 SeSA_A0571 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 YP_002113538.1 574092 R 439843 CDS YP_002113539.1 194737446 574677..575363 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 575363 439843000685 SeSA_A0570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113539.1 574677 D 439843 CDS YP_002113540.1 194736964 575360..577774 1 NC_011094.1 identified by match to protein family HMM PF02687; efflux ABC transporter permease 577774 439843000686 SeSA_A0572 Salmonella enterica subsp. enterica serovar Schwarzengrund str. efflux ABC transporter permease YP_002113540.1 575360 D 439843 CDS YP_002113541.1 194736202 577960..579093 1 NC_011094.1 outer membrane protein 579093 439843000687 SeSA_A0573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002113541.1 577960 D 439843 CDS YP_002113542.1 194735182 579350..580180 1 NC_011094.1 identified by match to protein family HMM PF03180; lipoprotein 580180 439843000688 SeSA_A0574 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002113542.1 579350 D 439843 CDS YP_002113543.1 194735600 580217..581233 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383; methionine import ATP-binding protein MetN 2 581233 439843000689 SeSA_A0575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionine import ATP-binding protein MetN 2 YP_002113543.1 580217 D 439843 CDS YP_002113544.1 194734801 581226..581885 1 NC_011094.1 identified by match to protein family HMM PF00528; ABC transporter 581885 439843000690 SeSA_A0576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter YP_002113544.1 581226 D 439843 CDS YP_002113545.1 194734279 complement(581924..583009) 1 NC_011094.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 583009 ybbB 439843000691 ybbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA 2-selenouridine synthase YP_002113545.1 581924 R 439843 CDS YP_002113546.1 194736649 complement(583105..584172) 1 NC_011094.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 584172 purK 439843000692 purK Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002113546.1 583105 R 439843 CDS YP_002113547.1 194738271 complement(584169..584678) 1 NC_011094.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 584678 purE 439843000693 purE Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_002113547.1 584169 R 439843 CDS YP_002113548.1 194738196 complement(584796..585518) 1 NC_011094.1 'catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine'; UDP-2,3-diacylglucosamine hydrolase 585518 lpxH 439843000694 lpxH Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-2,3-diacylglucosamine hydrolase YP_002113548.1 584796 R 439843 CDS YP_002113549.1 194737701 complement(585521..586015) 1 NC_011094.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 586015 ppiB 439843000695 ppiB Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase B YP_002113549.1 585521 R 439843 CDS YP_002113550.1 194734068 586188..587573 1 NC_011094.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 587573 cysS 439843000696 cysS Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteinyl-tRNA synthetase YP_002113550.1 586188 D 439843 CDS YP_002113551.1 194735867 complement(587617..588441) 1 NC_011094.1 outer membrane protein 588441 439843000697 SeSA_A0583 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002113551.1 587617 R 439843 CDS YP_002113552.1 194736771 complement(588438..588875) 1 NC_011094.1 hypothetical protein 588875 439843000698 SeSA_A0584 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113552.1 588438 R 439843 CDS YP_002113553.1 194736709 complement(588868..589413) 1 NC_011094.1 identified by match to protein family HMM PF04307; hypothetical protein 589413 439843000699 SeSA_A0585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113553.1 588868 R 439843 CDS YP_002113554.1 194738208 complement(589541..589753) 1 NC_011094.1 hypothetical protein 589753 439843000700 SeSA_A0586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113554.1 589541 R 439843 CDS YP_002113555.1 194737578 complement(589755..590621) 1 NC_011094.1 'catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate'; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 590621 folD 439843000701 folD Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002113555.1 589755 R 439843 CDS YP_002113556.1 194735954 591168..591725 1 NC_011094.1 identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 591725 439843000702 SeSA_A0588 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type-1 fimbrial protein subunit A YP_002113556.1 591168 D 439843 CDS YP_002113557.1 194734453 591839..592333 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 592333 439843000703 SeSA_A0589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113557.1 591839 D 439843 CDS YP_002113558.1 194737175 592377..593069 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 593069 439843000704 SeSA_A0590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein FimC YP_002113558.1 592377 D 439843 CDS YP_002113559.1 194735116 593100..595712 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 595712 439843000705 SeSA_A0591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein SfmD YP_002113559.1 593100 D 439843 CDS YP_002113560.1 194738098 595727..596734 1 NC_011094.1 mannose binding protein FimH 596734 439843000706 SeSA_A0592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannose binding protein FimH YP_002113560.1 595727 D 439843 CDS YP_002113561.1 194736416 596744..597262 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 597262 439843000707 SeSA_A0593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002113561.1 596744 D 439843 CDS YP_002113562.1 194734277 complement(597308..597940) 1 NC_011094.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 597940 439843000708 SeSA_A0594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator FimZ YP_002113562.1 597308 R 439843 CDS YP_002113563.1 194738200 complement(598544..599266) 1 NC_011094.1 fimbriae Y protein 599266 439843000709 SeSA_A0595 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbriae Y protein YP_002113563.1 598544 R 439843 CDS YP_002113564.1 194735582 complement(599285..599593) 1 NC_011094.1 hypothetical protein 599593 439843000710 SeSA_A0596 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113564.1 599285 R 439843 CDS YP_002113565.1 194736085 complement(599758..600354) 1 NC_011094.1 fimbriae W protein 600354 439843000711 SeSA_A0598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbriae W protein YP_002113565.1 599758 R 439843 CDS YP_002113566.1 194737350 600310..600546 1 NC_011094.1 hypothetical protein 600546 439843000712 SeSA_A0597 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113566.1 600310 D 439843 CDS YP_002113567.1 194734718 complement(600701..601864) 1 NC_011094.1 identified by match to protein family HMM PF00589; prophage DLP12 integrase 601864 439843000714 SeSA_A0600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prophage DLP12 integrase YP_002113567.1 600701 R 439843 CDS YP_002113568.1 194735328 complement(602303..602980) 1 NC_011094.1 identified by match to protein family HMM PF04448; valyl-tRNA synthetase 602980 439843000715 SeSA_A0601 Salmonella enterica subsp. enterica serovar Schwarzengrund str. valyl-tRNA synthetase YP_002113568.1 602303 R 439843 CDS YP_002113569.1 194736805 complement(602977..603219) 1 NC_011094.1 identified by glimmer; hypothetical protein 603219 439843000716 SeSA_A0602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113569.1 602977 R 439843 CDS YP_002113570.1 194734040 complement(603328..603600) 1 NC_011094.1 hypothetical protein 603600 439843000717 SeSA_A0603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113570.1 603328 R 439843 CDS YP_002113571.1 194735551 complement(603638..603814) 1 NC_011094.1 identified by glimmer; hypothetical protein 603814 439843000718 SeSA_A0604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113571.1 603638 R 439843 CDS YP_002113572.1 194734755 complement(603941..604384) 1 NC_011094.1 hypothetical protein 604384 439843000719 SeSA_A0606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113572.1 603941 R 439843 CDS YP_002113573.1 194734247 604383..604538 1 NC_011094.1 identified by glimmer; hypothetical protein 604538 439843000720 SeSA_A0605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113573.1 604383 D 439843 CDS YP_002113574.1 194738057 complement(604550..605047) 1 NC_011094.1 Eae protein 605047 439843000721 SeSA_A0607 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Eae protein YP_002113574.1 604550 R 439843 CDS YP_002113575.1 194737476 complement(605044..605208) 1 NC_011094.1 hypothetical protein 605208 439843000722 SeSA_A0608 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113575.1 605044 R 439843 CDS YP_002113576.1 194733993 complement(605219..605512) 1 NC_011094.1 anti-RecBCD protein 2 605512 439843000723 SeSA_A0609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anti-RecBCD protein 2 YP_002113576.1 605219 R 439843 CDS YP_002113577.1 194734704 complement(605536..605919) 1 NC_011094.1 Gp40 605919 439843000724 SeSA_A0610 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Gp40 YP_002113577.1 605536 R 439843 CDS YP_002113578.1 194736178 complement(605919..606056) 1 NC_011094.1 essential recombination function protein Erf 606056 439843000725 SeSA_A0611 Salmonella enterica subsp. enterica serovar Schwarzengrund str. essential recombination function protein Erf YP_002113578.1 605919 R 439843 CDS YP_002113579.1 194735686 complement(606781..606933) 1 NC_011094.1 hypothetical protein 606933 439843000726 SeSA_A0612 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113579.1 606781 R 439843 CDS YP_002113580.1 194738067 complement(607074..608042) 1 NC_011094.1 identified by glimmer; hypothetical protein 608042 439843000727 SeSA_A0613 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113580.1 607074 R 439843 CDS YP_002113581.1 194737452 complement(608225..608695) 1 NC_011094.1 identified by glimmer; hypothetical protein 608695 439843000728 SeSA_A0614 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113581.1 608225 R 439843 CDS YP_002113582.1 194734855 608970..609110 1 NC_011094.1 identified by glimmer; hypothetical protein 609110 439843000729 SeSA_A0615 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113582.1 608970 D 439843 CDS YP_002113583.1 194734224 609841..609957 1 NC_011094.1 identified by glimmer; hypothetical protein 609957 439843000730 SeSA_A0616 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113583.1 609841 D 439843 CDS YP_002113584.1 194734385 610406..610621 1 NC_011094.1 identified by match to protein family HMM PF01381; hypothetical protein 610621 439843000731 SeSA_A0617 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113584.1 610406 D 439843 CDS YP_002113585.1 194735994 610894..611013 1 NC_011094.1 transcriptional activator-regulatory protein 611013 439843000732 SeSA_A0618 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator-regulatory protein YP_002113585.1 610894 D 439843 CDS YP_002113586.1 194736358 611048..611194 1 NC_011094.1 hypothetical protein 611194 439843000733 SeSA_A0619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113586.1 611048 D 439843 CDS YP_002113587.1 194737932 611187..612047 1 NC_011094.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gp59 612047 439843000734 SeSA_A0620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp59 YP_002113587.1 611187 D 439843 CDS YP_002113588.1 194738223 612203..614035 1 NC_011094.1 gp61 614035 439843000735 SeSA_A0621 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp61 YP_002113588.1 612203 D 439843 CDS YP_002113589.1 194737590 614186..614314 1 NC_011094.1 gp62 614314 439843000736 SeSA_A0622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp62 YP_002113589.1 614186 D 439843 CDS YP_002113590.1 194734107 complement(614332..614481) 1 NC_011094.1 identified by glimmer; hypothetical protein 614481 439843000737 SeSA_A0623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113590.1 614332 R 439843 CDS YP_002113591.1 194736061 615183..615311 1 NC_011094.1 hypothetical protein 615311 439843000738 SeSA_A0624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113591.1 615183 D 439843 CDS YP_002113592.1 194736747 615786..615962 1 NC_011094.1 Rus 615962 439843000739 SeSA_A0625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Rus YP_002113592.1 615786 D 439843 CDS YP_002113593.1 194736316 616143..616322 1 NC_011094.1 hypothetical protein 616322 439843000740 SeSA_A0626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113593.1 616143 D 439843 CDS YP_002113594.1 194738029 617622..617747 1 NC_011094.1 hypothetical protein 617747 439843000741 SeSA_A0627 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113594.1 617622 D 439843 CDS YP_002113595.1 194737543 617971..618243 1 NC_011094.1 bacteriophage protein 618243 439843000742 SeSA_A0628 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage protein YP_002113595.1 617971 D 439843 CDS YP_002113596.1 194734222 618243..618740 1 NC_011094.1 identified by match to protein family HMM PF00959; phage lysozyme 618740 439843000743 SeSA_A0629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage lysozyme YP_002113596.1 618243 D 439843 CDS YP_002113597.1 194738299 619506..620003 1 NC_011094.1 identified by match to protein family HMM PF04383; KilA-N domain family protein 620003 439843000744 SeSA_A0630 Salmonella enterica subsp. enterica serovar Schwarzengrund str. KilA-N domain family protein YP_002113597.1 619506 D 439843 CDS YP_002113598.1 194734553 620075..620257 1 NC_011094.1 bacteriophage protein 620257 439843000745 SeSA_A0631 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage protein YP_002113598.1 620075 D 439843 CDS YP_002113599.1 194734494 620826..621083 1 NC_011094.1 gp1 621083 439843000746 SeSA_A0632 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp1 YP_002113599.1 620826 D 439843 CDS YP_002113600.1 194735659 621067..622386 1 NC_011094.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; phage terminase, large subunit, pbsx family protein 622386 439843000747 SeSA_A0633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase, large subunit, pbsx family protein YP_002113600.1 621067 D 439843 CDS YP_002113601.1 194735139 622456..623871 1 NC_011094.1 gp5 623871 439843000748 SeSA_A0634 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp5 YP_002113601.1 622456 D 439843 CDS YP_002113602.1 194737738 623825..624784 1 NC_011094.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; gp6 624784 439843000749 SeSA_A0635 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp6 YP_002113602.1 623825 D 439843 CDS YP_002113603.1 194737266 624800..626062 1 NC_011094.1 gp7 626062 439843000750 SeSA_A0636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp7 YP_002113603.1 624800 D 439843 CDS YP_002113604.1 194734873 626075..626524 1 NC_011094.1 gp8 626524 439843000751 SeSA_A0637 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp8 YP_002113604.1 626075 D 439843 CDS YP_002113605.1 194734081 626542..627618 1 NC_011094.1 gp9 627618 439843000752 SeSA_A0638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp9 YP_002113605.1 626542 D 439843 CDS YP_002113606.1 194735898 627628..627807 1 NC_011094.1 hypothetical protein 627807 439843000753 SeSA_A0639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113606.1 627628 D 439843 CDS YP_002113607.1 194735255 complement(628135..628266) 1 NC_011094.1 identified by glimmer; hypothetical protein 628266 439843000754 SeSA_A0641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113607.1 628135 R 439843 CDS YP_002113608.1 194735319 628260..628439 1 NC_011094.1 hypothetical protein 628439 439843000755 SeSA_A0640 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113608.1 628260 D 439843 CDS YP_002113609.1 194734515 628432..628794 1 NC_011094.1 gp13 628794 439843000756 SeSA_A0642 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp13 YP_002113609.1 628432 D 439843 CDS YP_002113610.1 194736626 628882..629319 1 NC_011094.1 identified by glimmer; hypothetical protein 629319 439843000757 SeSA_A0643 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113610.1 628882 D 439843 CDS YP_002113611.1 194735730 629316..629702 1 NC_011094.1 gp15 629702 439843000758 SeSA_A0644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp15 YP_002113611.1 629316 D 439843 CDS YP_002113612.1 194737241 629720..630460 1 NC_011094.1 identified by match to protein family HMM PF07679; gp16 630460 439843000759 SeSA_A0645 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp16 YP_002113612.1 629720 D 439843 CDS YP_002113613.1 194736634 630505..631158 1 NC_011094.1 gp17 631158 439843000760 SeSA_A0646 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp17 YP_002113613.1 630505 D 439843 CDS YP_008119763.1 513549439 631380..632108 1 NC_011094.1 hypothetical protein 632108 439843000761 SeSA_A0647 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119763.1 631380 D 439843 CDS YP_002113614.1 194737611 complement(632130..632501) 1 NC_011094.1 identified by glimmer; hypothetical protein 632501 439843000762 SeSA_A0648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113614.1 632130 R 439843 CDS YP_002113615.1 194734101 632542..632679 1 NC_011094.1 identified by glimmer; hypothetical protein 632679 439843000763 SeSA_A0649 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113615.1 632542 D 439843 CDS YP_002113616.1 194734697 complement(632700..632822) 1 NC_011094.1 identified by glimmer; hypothetical protein 632822 439843000764 SeSA_A0650 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113616.1 632700 R 439843 CDS YP_002113617.1 194735043 633137..633310 1 NC_011094.1 identified by glimmer; hypothetical protein 633310 439843000765 SeSA_A0651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113617.1 633137 D 439843 CDS YP_002113618.1 194735697 633384..634022 1 NC_011094.1 hypothetical protein 634022 439843000766 SeSA_A0652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113618.1 633384 D 439843 CDS YP_002113619.1 194737589 634102..634890 1 NC_011094.1 hypothetical protein 634890 439843000767 SeSA_A0653 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113619.1 634102 D 439843 CDS YP_002113620.1 194738158 636160..636477 1 NC_011094.1 hypothetical protein 636477 439843000768 SeSA_A0654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113620.1 636160 D 439843 CDS YP_002113621.1 194734089 complement(636599..637453) 1 NC_011094.1 identified by match to protein family HMM PF04383; KilA, N- domain-containing protein 637453 439843000769 SeSA_A0655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. KilA, N- domain-containing protein YP_002113621.1 636599 R 439843 CDS YP_002113622.1 194734620 637763..638176 1 NC_011094.1 hypothetical protein 638176 439843000770 SeSA_A0656 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113622.1 637763 D 439843 CDS YP_002113623.1 194735627 638552..641722 1 NC_011094.1 identified by match to protein family HMM TIGR02675; gp21 641722 439843000771 SeSA_A0657 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp21 YP_002113623.1 638552 D 439843 CDS YP_002113624.1 194734087 complement(641747..641863) 1 NC_011094.1 identified by glimmer; hypothetical protein 641863 439843000772 SeSA_A0658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113624.1 641747 R 439843 CDS YP_002113625.1 194737686 complement(641944..642084) 1 NC_011094.1 identified by glimmer; hypothetical protein 642084 439843000773 SeSA_A0660 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113625.1 641944 R 439843 CDS YP_002113626.1 194734137 642072..642419 1 NC_011094.1 identified by match to protein family HMM PF05939; phage minor tail protein 642419 439843000774 SeSA_A0659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein YP_002113626.1 642072 D 439843 CDS YP_002113627.1 194736718 642455..643159 1 NC_011094.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 643159 439843000775 SeSA_A0661 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein L YP_002113627.1 642455 D 439843 CDS YP_002113628.1 194737214 complement(643848..644012) 1 NC_011094.1 identified by glimmer; hypothetical protein 644012 439843000776 SeSA_A0662 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113628.1 643848 R 439843 CDS YP_002113629.1 194735138 644358..647537 1 NC_011094.1 identified by match to protein family HMM PF09327; gp29 647537 439843000777 SeSA_A0663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp29 YP_002113629.1 644358 D 439843 CDS YP_002113630.1 194735639 647546..648505 1 NC_011094.1 hypothetical protein 648505 439843000778 SeSA_A0664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113630.1 647546 D 439843 CDS YP_002113631.1 194735171 648516..649652 1 NC_011094.1 identified by glimmer; hypothetical protein 649652 439843000779 SeSA_A0665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113631.1 648516 D 439843 CDS YP_002113632.1 194735670 650260..651447 1 NC_011094.1 identified by match to protein family HMM PF00589; integrase 651447 439843000780 SeSA_A0666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase YP_002113632.1 650260 D 439843 CDS YP_002113633.1 194734149 651947..652093 1 NC_011094.1 identified by glimmer; hypothetical protein 652093 439843000781 SeSA_A0667 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113633.1 651947 D 439843 CDS YP_002113634.1 194734646 652744..652941 1 NC_011094.1 identified by match to protein family HMM PF05930; hypothetical protein 652941 439843000782 SeSA_A0668 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113634.1 652744 D 439843 CDS YP_002113635.1 194736375 653043..653639 1 NC_011094.1 hypothetical protein 653639 439843000783 SeSA_A0669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113635.1 653043 D 439843 CDS YP_002113636.1 194737335 654525..654686 1 NC_011094.1 identified by glimmer; hypothetical protein 654686 439843000784 SeSA_A0671 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113636.1 654525 D 439843 CDS YP_002113637.1 194735031 complement(654796..654960) 1 NC_011094.1 identified by glimmer; hypothetical protein 654960 439843000785 SeSA_A0672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113637.1 654796 R 439843 CDS YP_002113639.1 194736961 655441..655761 1 NC_011094.1 Ant2 655761 439843000786 SeSA_A0675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Ant2 YP_002113639.1 655441 D 439843 CDS YP_002113640.1 194736389 655772..656566 1 NC_011094.1 hypothetical protein 656566 439843000787 SeSA_A0676 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113640.1 655772 D 439843 CDS YP_002113641.1 194737979 656563..656868 1 NC_011094.1 identified by glimmer; hypothetical protein 656868 439843000788 SeSA_A0677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113641.1 656563 D 439843 CDS YP_002113642.1 194737757 656958..657341 1 NC_011094.1 identified by glimmer; hypothetical protein 657341 439843000789 SeSA_A0678 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113642.1 656958 D 439843 CDS YP_002113643.1 194737443 657334..657981 1 NC_011094.1 hypothetical protein 657981 439843000790 SeSA_A0679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113643.1 657334 D 439843 CDS YP_002113644.1 194734804 657991..660132 1 NC_011094.1 P4 alpha zinc-binding domain-containing protein 660132 439843000791 SeSA_A0680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. P4 alpha zinc-binding domain-containing protein YP_002113644.1 657991 D 439843 CDS YP_002113645.1 194734418 660129..660524 1 NC_011094.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; ssDNA-binding protein 660524 439843000792 SeSA_A0681 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ssDNA-binding protein YP_002113645.1 660129 D 439843 CDS YP_002113646.1 194736069 660568..661482 1 NC_011094.1 hypothetical protein 661482 439843000793 SeSA_A0682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113646.1 660568 D 439843 CDS YP_002113647.1 194735755 661576..662379 1 NC_011094.1 identified by match to protein family HMM PF03589; gp23 662379 439843000794 SeSA_A0683 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gp23 YP_002113647.1 661576 D 439843 CDS YP_002113648.1 194735101 complement(662495..662962) 1 NC_011094.1 hypothetical protein 662962 439843000795 SeSA_A0684 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113648.1 662495 R 439843 CDS YP_002113649.1 194736946 664203..664547 1 NC_011094.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family protein 664547 439843000796 SeSA_A0685 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage holin, lambda family protein YP_002113649.1 664203 D 439843 CDS YP_002113650.1 194736331 664550..665164 1 NC_011094.1 lytic enzyme 665164 439843000797 SeSA_A0686 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lytic enzyme YP_002113650.1 664550 D 439843 CDS YP_002113651.1 194738293 665161..665697 1 NC_011094.1 protein gp55 665697 439843000798 SeSA_A0687 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein gp55 YP_002113651.1 665161 D 439843 CDS YP_002113652.1 194737824 665694..665945 1 NC_011094.1 identified by glimmer; hypothetical protein 665945 439843000799 SeSA_A0688 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113652.1 665694 D 439843 CDS YP_002113653.1 194737189 666021..666554 1 NC_011094.1 identified by glimmer; hypothetical protein 666554 439843000800 SeSA_A0689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113653.1 666021 D 439843 CDS YP_002113654.1 194735385 complement(666897..667043) 1 NC_011094.1 identified by glimmer; hypothetical protein 667043 439843000801 SeSA_A0690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113654.1 666897 R 439843 CDS YP_002113655.1 194735066 667212..667709 1 NC_011094.1 identified by match to protein family HMM PF07278; hypothetical protein 667709 439843000802 SeSA_A0691 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113655.1 667212 D 439843 CDS YP_002113656.1 194734351 667681..669810 1 NC_011094.1 identified by match to protein family HMM PF05876; phage terminase large subunit 669810 439843000803 SeSA_A0692 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase large subunit YP_002113656.1 667681 D 439843 CDS YP_002113657.1 194734108 669807..670013 1 NC_011094.1 hypothetical protein 670013 439843000804 SeSA_A0693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113657.1 669807 D 439843 CDS YP_002113658.1 194734641 670010..671545 1 NC_011094.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein, lambda family protein 671545 439843000805 SeSA_A0694 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage portal protein, lambda family protein YP_002113658.1 670010 D 439843 CDS YP_002113659.1 194737695 671508..673577 1 NC_011094.1 identified by match to protein family HMM PF00574; ATP-dependent protease 673577 439843000806 SeSA_A0695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent protease YP_002113659.1 671508 D 439843 CDS YP_002113660.1 194738176 673666..673989 1 NC_011094.1 hypothetical protein 673989 439843000807 SeSA_A0696 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113660.1 673666 D 439843 CDS YP_002113661.1 194735461 673982..674257 1 NC_011094.1 hypothetical protein 674257 439843000808 SeSA_A0697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113661.1 673982 D 439843 CDS YP_002113662.1 194735980 674261..674845 1 NC_011094.1 identified by match to protein family HMM PF06763; prophage minor tail protein Z 674845 439843000809 SeSA_A0698 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prophage minor tail protein Z YP_002113662.1 674261 D 439843 CDS YP_002113663.1 194737418 674842..675243 1 NC_011094.1 identified by match to protein family HMM PF06141; phage minor tail protein U 675243 439843000810 SeSA_A0699 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein U YP_002113663.1 674842 D 439843 CDS YP_002113664.1 194737744 675254..675997 1 NC_011094.1 identified by match to protein family HMM PF02368; gifsy-1 prophage VmtV 675997 439843000811 SeSA_A0700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage VmtV YP_002113664.1 675254 D 439843 CDS YP_002113665.1 194736392 676048..676443 1 NC_011094.1 identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 676443 439843000812 SeSA_A0701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein G YP_002113665.1 676048 D 439843 CDS YP_002113666.1 194736774 676506..676778 1 NC_011094.1 identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 676778 439843000813 SeSA_A0702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage tail assembly protein T YP_002113666.1 676506 D 439843 CDS YP_002113667.1 194735514 676750..679845 1 NC_011094.1 identified by match to protein family HMM PF06791; match to protein family HMM PF09718; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 679845 439843000814 SeSA_A0703 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage VmtH YP_002113667.1 676750 D 439843 CDS YP_002113668.1 194736145 679848..680177 1 NC_011094.1 identified by match to protein family HMM PF05939; phage minor tail protein 680177 439843000815 SeSA_A0704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein YP_002113668.1 679848 D 439843 CDS YP_002113669.1 194734736 680187..680885 1 NC_011094.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 680885 439843000816 SeSA_A0705 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage minor tail protein L YP_002113669.1 680187 D 439843 CDS YP_008119764.1 513549440 680892..681629 1 NC_011094.1 tail assembly protein K 681629 439843000817 SeSA_A0706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail assembly protein K YP_008119764.1 680892 D 439843 CDS YP_002113670.1 194737407 681668..682174 1 NC_011094.1 identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 682174 439843000818 SeSA_A0707 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage lambda tail assembly protein I YP_002113670.1 681668 D 439843 CDS YP_002113671.1 194737885 682236..685598 1 NC_011094.1 identified by match to protein family HMM PF00041; match to protein family HMM PF09327; host specificity protein 685598 439843000819 SeSA_A0708 Salmonella enterica subsp. enterica serovar Schwarzengrund str. host specificity protein YP_002113671.1 682236 D 439843 CDS YP_002113672.1 194738375 685637..685879 1 NC_011094.1 hypothetical protein 685879 439843000820 SeSA_A0709 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113672.1 685637 D 439843 CDS YP_002113673.1 194736619 685933..688611 1 NC_011094.1 identified by match to protein family HMM PF03406; match to protein family HMM PF08400; side tail fiber protein 688611 439843000821 SeSA_A0710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. side tail fiber protein YP_002113673.1 685933 D 439843 CDS YP_002113674.1 194734821 688626..689144 1 NC_011094.1 identified by match to protein family HMM PF02413; bacteriophage tail protein 689144 439843000822 SeSA_A0711 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage tail protein YP_002113674.1 688626 D 439843 CDS YP_002113675.1 194737548 complement(689185..689343) 1 NC_011094.1 identified by glimmer; hypothetical protein 689343 439843000823 SeSA_A0712 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113675.1 689185 R 439843 CDS YP_002113676.1 194737334 complement(689969..690739) 1 NC_011094.1 identified by match to protein family HMM PF00497; polar amino acid ABC transporter substrate-binding protein 690739 439843000824 SeSA_A0714 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polar amino acid ABC transporter substrate-binding protein YP_002113676.1 689969 R 439843 CDS YP_002113677.1 194736810 complement(691458..692129) 1 NC_011094.1 identified by match to protein family HMM PF02586; hypothetical protein 692129 439843000825 SeSA_A0715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113677.1 691458 R 439843 CDS YP_002113678.1 194736267 complement(692429..693127) 1 NC_011094.1 identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690; arsenical resistance protein ArsH 693127 arsH 439843000826 arsH Salmonella enterica subsp. enterica serovar Schwarzengrund str. arsenical resistance protein ArsH YP_002113678.1 692429 R 439843 CDS YP_002113679.1 194736038 693578..694867 1 NC_011094.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935; arsenical pump membrane protein 694867 439843000827 SeSA_A0717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arsenical pump membrane protein YP_002113679.1 693578 D 439843 CDS YP_002113680.1 194735384 694880..695305 1 NC_011094.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 695305 arsC 439843000828 arsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. arsenate reductase YP_002113680.1 694880 D 439843 CDS YP_002113681.1 194737539 complement(695659..695784) 1 NC_011094.1 hypothetical protein 695784 439843000829 SeSA_A0719 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113681.1 695659 R 439843 CDS YP_002113682.1 194737010 696637..696903 1 NC_011094.1 identified by match to protein family HMM PF01527; transposase subfamily protein 696903 439843000830 SeSA_A0720 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase subfamily protein YP_002113682.1 696637 D 439843 CDS YP_002113683.1 194735995 complement(697905..699362) 1 NC_011094.1 O-antigen conversion protein 699362 439843000832 SeSA_A0723 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-antigen conversion protein YP_002113683.1 697905 R 439843 CDS YP_002113684.1 194735464 complement(699364..700284) 1 NC_011094.1 identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase 700284 439843000833 SeSA_A0724 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bactoprenol glucosyl transferase YP_002113684.1 699364 R 439843 CDS YP_002113685.1 194736985 complement(700281..700643) 1 NC_011094.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase 700643 439843000834 SeSA_A0725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bactoprenol-linked glucose translocase YP_002113685.1 700281 R 439843 CDS YP_002113686.1 194736386 complement(701068..701313) 1 NC_011094.1 copE1 701313 439843000835 SeSA_A0726 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copE1 YP_002113686.1 701068 R 439843 CDS YP_002113687.1 194736868 complement(701513..701887) 1 NC_011094.1 identified by match to protein family HMM PF02518; sensor kinase CusS 701887 439843000836 SeSA_A0727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor kinase CusS YP_002113687.1 701513 R 439843 CDS YP_002113688.1 194736238 701942..702157 1 NC_011094.1 cation efflux system protein CusA 702157 439843000837 SeSA_A0728 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cation efflux system protein CusA YP_002113688.1 701942 D 439843 CDS YP_002113689.1 194734422 complement(702208..703062) 1 NC_011094.1 identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein 703062 439843000838 SeSA_A0729 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, AraC family protein YP_002113689.1 702208 R 439843 CDS YP_002113690.1 194738130 703278..704603 1 NC_011094.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 704603 439843000839 SeSA_A0730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridine nucleotide-disulfide oxidoreductase YP_002113690.1 703278 D 439843 CDS YP_002113691.1 194735549 complement(704653..704775) 1 NC_011094.1 identified by glimmer; hypothetical protein 704775 439843000840 SeSA_A0732 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113691.1 704653 R 439843 CDS YP_002113692.1 194734565 704759..704995 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 704995 439843000841 SeSA_A0731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113692.1 704759 D 439843 CDS YP_002113693.1 194736887 705008..705568 1 NC_011094.1 identified by match to protein family HMM PF04224; hypothetical protein 705568 439843000842 SeSA_A0733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113693.1 705008 D 439843 CDS YP_002113694.1 194736420 complement(705663..706838) 1 NC_011094.1 molecular chaperone DnaJ 706838 439843000843 SeSA_A0734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molecular chaperone DnaJ YP_002113694.1 705663 R 439843 CDS YP_002113695.1 194737876 707164..708558 1 NC_011094.1 identified by match to protein family HMM PF00324; phenylalanine transporter 708558 439843000844 SeSA_A0735 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phenylalanine transporter YP_002113695.1 707164 D 439843 CDS YP_002113696.1 194737417 complement(708600..709847) 1 NC_011094.1 identified by match to protein family HMM PF00924; transporter small conductance mechanosensitive ion channel 709847 439843000845 SeSA_A0736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter small conductance mechanosensitive ion channel YP_002113696.1 708600 R 439843 CDS YP_002113697.1 194738400 complement(709930..710052) 1 NC_011094.1 identified by glimmer; hypothetical protein 710052 439843000846 SeSA_A0737 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113697.1 709930 R 439843 CDS YP_002113698.1 194737691 710158..711912 1 NC_011094.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; lipase 1 711912 439843000847 SeSA_A0738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipase 1 YP_002113698.1 710158 D 439843 CDS YP_002113699.1 194735699 712338..712679 1 NC_011094.1 identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 712679 439843000848 SeSA_A0739 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposon Tn10 TetD protein YP_002113699.1 712338 D 439843 CDS YP_002113700.1 194736729 complement(712685..712909) 1 NC_011094.1 hypothetical protein 712909 439843000849 SeSA_A0740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113700.1 712685 R 439843 CDS YP_002113701.1 194734677 complement(713000..714118) 1 NC_011094.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 714118 439843000850 SeSA_A0741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carboxylate-amine ligase YP_002113701.1 713000 R 439843 CDS YP_002113702.1 194735042 complement(714130..714834) 1 NC_011094.1 identified by match to protein family HMM PF01648; enterobactin synthase multienzyme complex phosphopantetheinyltransferase 714834 439843000851 SeSA_A0742 Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterobactin synthase multienzyme complex phosphopantetheinyltransferase YP_002113702.1 714130 R 439843 CDS YP_002113703.1 194737055 complement(714882..717137) 1 NC_011094.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 717137 439843000852 SeSA_A0743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane receptor FepA YP_002113703.1 714882 R 439843 CDS YP_002113704.1 194737462 717326..718540 1 NC_011094.1 identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 718540 439843000853 SeSA_A0744 Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterobactin/ferric enterobactin esterase YP_002113704.1 717326 D 439843 CDS YP_002113705.1 194736088 718571..718789 1 NC_011094.1 identified by match to protein family HMM PF03621; hypothetical protein 718789 439843000854 SeSA_A0745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113705.1 718571 D 439843 CDS YP_002113706.1 194736590 718786..722670 1 NC_011094.1 'with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin'; enterobactin synthase subunit F 722670 entF 439843000855 entF Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterobactin synthase subunit F YP_002113706.1 718786 D 439843 CDS YP_002113707.1 194734437 722920..724056 1 NC_011094.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 724056 439843000856 SeSA_A0747 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferric enterobactin transport protein FepE YP_002113707.1 722920 D 439843 CDS YP_002113708.1 194734967 complement(724110..724904) 1 NC_011094.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 724904 439843000857 SeSA_A0748 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-enterobactin transporter ATP-binding protein YP_002113708.1 724110 R 439843 CDS YP_002113709.1 194738035 complement(724901..725890) 1 NC_011094.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 725890 439843000858 SeSA_A0749 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-enterobactin transporter permease YP_002113709.1 724901 R 439843 CDS YP_002113710.1 194737563 complement(725890..726897) 1 NC_011094.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 726897 439843000859 SeSA_A0750 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-enterobactin transporter membrane protein YP_002113710.1 725890 R 439843 CDS YP_002113711.1 194734782 727008..728252 1 NC_011094.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 728252 439843000860 SeSA_A0751 Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterobactin exporter EntS YP_002113711.1 727008 D 439843 CDS YP_002113712.1 194734282 complement(728315..729271) 1 NC_011094.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 729271 439843000861 SeSA_A0752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-enterobactin transporter periplasmic binding protein YP_002113712.1 728315 R 439843 CDS YP_002113713.1 194736755 729580..730755 1 NC_011094.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 730755 439843000862 SeSA_A0753 Salmonella enterica subsp. enterica serovar Schwarzengrund str. isochorismate synthase EntC YP_002113713.1 729580 D 439843 CDS YP_002113714.1 194735160 730765..732375 1 NC_011094.1 'bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate'; enterobactin synthase subunit E 732375 entE 439843000863 entE Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterobactin synthase subunit E YP_002113714.1 730765 D 439843 CDS YP_002113715.1 194736615 732389..733246 1 NC_011094.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 733246 entB 439843000864 entB Salmonella enterica subsp. enterica serovar Schwarzengrund str. isochorismatase YP_002113715.1 732389 D 439843 CDS YP_002113716.1 194737247 733246..734001 1 NC_011094.1 'catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin'; 2,3-dihydroxybenzoate-2,3-dehydrogenase 734001 entA 439843000865 entA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_002113716.1 733246 D 439843 CDS YP_002113717.1 194734096 734004..734417 1 NC_011094.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 734417 439843000866 SeSA_A0757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113717.1 734004 D 439843 CDS YP_002113718.1 194737955 734599..736704 1 NC_011094.1 identified by match to protein family HMM PF02554; carbon starvation protein A 736704 cstA 439843000867 cstA Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbon starvation protein A YP_002113718.1 734599 D 439843 CDS YP_002113719.1 194735779 736768..736965 1 NC_011094.1 identified by match to protein family HMM PF04328; hypothetical protein 736965 439843000868 SeSA_A0759 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113719.1 736768 D 439843 CDS YP_002113720.1 194735278 complement(737001..738089) 1 NC_011094.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 738089 439843000869 SeSA_A0760 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113720.1 737001 R 439843 CDS YP_002113721.1 194737666 738216..739376 1 NC_011094.1 catalyzes the transfer of an amino moiety; aminotransferase 739376 439843000870 SeSA_A0761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminotransferase YP_002113721.1 738216 D 439843 CDS YP_002113722.1 194737186 complement(739377..739994) 1 NC_011094.1 identified by match to protein family HMM PF02195; IbrB protein 739994 439843000871 SeSA_A0762 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IbrB protein YP_002113722.1 739377 R 439843 CDS YP_002113723.1 194738346 complement(739967..741202) 1 NC_011094.1 identified by match to protein family HMM PF01507; IbrA protein 741202 439843000872 SeSA_A0763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IbrA protein YP_002113723.1 739967 R 439843 CDS YP_002113724.1 194737844 complement(741365..742270) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 742270 439843000873 SeSA_A0764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002113724.1 741365 R 439843 CDS YP_002113725.1 194734485 complement(742587..743333) 1 NC_011094.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 743333 dsbG 439843000874 dsbG Salmonella enterica subsp. enterica serovar Schwarzengrund str. disulfide isomerase/thiol-disulfide oxidase YP_002113725.1 742587 R 439843 CDS YP_002113726.1 194734075 743774..744337 1 NC_011094.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 744337 ahpC 439843000875 ahpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. alkyl hydroperoxide reductase YP_002113726.1 743774 D 439843 CDS YP_008119765.1 513549441 744579..746144 1 NC_011094.1 alkyl hydroperoxide reductase subunit F 746144 ahpF 439843000876 ahpF Salmonella enterica subsp. enterica serovar Schwarzengrund str. alkyl hydroperoxide reductase subunit F YP_008119765.1 744579 D 439843 CDS YP_002113727.1 194736538 746477..747037 1 NC_011094.1 identified by match to protein family HMM PF06192; anaerobic dehydrogenase component 747037 439843000877 SeSA_A0768 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dehydrogenase component YP_002113727.1 746477 D 439843 CDS YP_002113728.1 194737142 747030..749309 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin-containing oxidoreductase catalytic subunit 749309 439843000878 SeSA_A0769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin-containing oxidoreductase catalytic subunit YP_002113728.1 747030 D 439843 CDS YP_002113729.1 194736674 749306..749863 1 NC_011094.1 identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 749863 439843000879 SeSA_A0770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin-containing oxidoreductase iron-sulfur subunit YP_002113729.1 749306 D 439843 CDS YP_002113730.1 194738178 749863..750630 1 NC_011094.1 molybdopterin-containing oxidoreductase membrane anchor subunit 750630 439843000880 SeSA_A0771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin-containing oxidoreductase membrane anchor subunit YP_002113730.1 749863 D 439843 CDS YP_002113731.2 449306282 complement(750698..751126) 1 NC_011094.1 universal stress protein G 751126 439843000881 SeSA_A0772 Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein G YP_002113731.2 750698 R 439843 CDS YP_002113732.1 194734069 751348..752586 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; S-(hydroxymethyl)glutathione dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) (fdh) (faldh) 752586 439843000882 SeSA_A0774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-(hydroxymethyl)glutathione dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) (fdh) (faldh) YP_002113732.1 751348 D 439843 CDS YP_002113733.1 194735601 complement(752669..753079) 1 NC_011094.1 'Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation'; nucleoside diphosphate kinase regulator 753079 439843000883 SeSA_A0775 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside diphosphate kinase regulator YP_002113733.1 752669 R 439843 CDS YP_002113734.1 194735105 complement(753314..754120) 1 NC_011094.1 ribonuclease I 754120 439843000884 SeSA_A0776 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease I YP_002113734.1 753314 R 439843 CDS YP_002113735.1 194736584 complement(754230..755693) 1 NC_011094.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein 755693 439843000885 SeSA_A0777 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium:sulfate symporter family protein YP_002113735.1 754230 R 439843 CDS YP_002113736.1 194738324 complement(755731..756624) 1 NC_011094.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 756624 citG 439843000886 citG Salmonella enterica subsp. enterica serovar Schwarzengrund str. triphosphoribosyl-dephospho-CoA synthase YP_002113736.1 755731 R 439843 CDS YP_002113737.1 194735423 complement(756599..757150) 1 NC_011094.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 757150 citX 439843000887 citX Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase YP_002113737.1 756599 R 439843 CDS YP_002113738.1 194735905 complement(757154..758683) 1 NC_011094.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 758683 citF 439843000888 citF Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate lyase subunit alpha YP_002113738.1 757154 R 439843 CDS YP_002113739.1 194736633 complement(758693..759601) 1 NC_011094.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 759601 citE 439843000889 citE Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate (pro-3S)-lyase subunit beta YP_002113739.1 758693 R 439843 CDS YP_002113740.1 194737133 complement(759598..759894) 1 NC_011094.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 759894 citD 439843000890 citD Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate lyase subunit gamma YP_002113740.1 759598 R 439843 CDS YP_002113741.1 194734902 complement(759891..760967) 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 760967 citC 439843000891 citC Salmonella enterica subsp. enterica serovar Schwarzengrund str. [citrate (pro-3S)-lyase] ligase YP_002113741.1 759891 R 439843 CDS YP_002113742.1 194737782 761353..763014 1 NC_011094.1 identified by match to protein family HMM PF02518; sensor kinase DpiB 763014 439843000892 SeSA_A0784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor kinase DpiB YP_002113742.1 761353 D 439843 CDS YP_002113743.1 194733943 762983..763663 1 NC_011094.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 763663 dpiA 439843000893 dpiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. two-component response regulator DpiA YP_002113743.1 762983 D 439843 CDS YP_002113744.1 194734549 complement(763717..765147) 1 NC_011094.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 765147 dcuC 439843000894 dcuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. C4-dicarboxylate transporter DcuC YP_002113744.1 763717 R 439843 CDS YP_002113745.1 194736997 765493..766053 1 NC_011094.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 766053 pagP 439843000895 pagP Salmonella enterica subsp. enterica serovar Schwarzengrund str. palmitoyl transferase YP_002113745.1 765493 D 439843 CDS YP_002113746.1 194735055 766241..766450 1 NC_011094.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 766450 cspE 439843000896 cspE Salmonella enterica subsp. enterica serovar Schwarzengrund str. cold shock protein CspE YP_002113746.1 766241 D 439843 CDS YP_002113747.1 194736545 complement(766508..766891) 1 NC_011094.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 766891 crcB 439843000897 crcB Salmonella enterica subsp. enterica serovar Schwarzengrund str. camphor resistance protein CrcB YP_002113747.1 766508 R 439843 CDS YP_002113748.1 194734598 766982..767770 1 NC_011094.1 identified by match to protein family HMM PF00795; hydrolase YbeM 767770 439843000898 SeSA_A0790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase YbeM YP_002113748.1 766982 D 439843 CDS YP_002113749.1 194737531 767899..768102 1 NC_011094.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 768102 tatE 439843000899 tatE Salmonella enterica subsp. enterica serovar Schwarzengrund str. twin arginine translocase protein E YP_002113749.1 767899 D 439843 CDS YP_002113750.1 194735111 complement(768188..769153) 1 NC_011094.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 769153 lipA 439843000900 lipA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoyl synthase YP_002113750.1 768188 R 439843 CDS YP_002113751.1 194735743 complement(769194..769328) 1 NC_011094.1 identified by glimmer; hypothetical protein 769328 439843000901 SeSA_A0793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113751.1 769194 R 439843 CDS YP_002113752.1 194737158 complement(769359..770312) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 770312 439843000902 SeSA_A0794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002113752.1 769359 R 439843 CDS YP_002113753.1 194735605 complement(770614..771255) 1 NC_011094.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 771255 lipB 439843000903 lipB Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoate-protein ligase B YP_002113753.1 770614 R 439843 CDS YP_002113754.1 194737188 complement(771355..771618) 1 NC_011094.1 identified by match to protein family HMM PF04359; hypothetical protein 771618 439843000904 SeSA_A0796 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113754.1 771355 R 439843 CDS YP_002113755.1 194736722 complement(771727..772938) 1 NC_011094.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 772938 dacA 439843000905 dacA Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine carboxypeptidase YP_002113755.1 771727 R 439843 CDS YP_002113756.1 194737544 complement(773078..774211) 1 NC_011094.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A 774211 439843000906 SeSA_A0798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. rare lipoprotein A YP_002113756.1 773078 R 439843 CDS YP_002113757.1 194736655 complement(774222..775334) 1 NC_011094.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein 775334 mrdB 439843000907 mrdB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell wall shape-determining protein YP_002113757.1 774222 R 439843 CDS YP_002113758.1 194734608 complement(775337..777238) 1 NC_011094.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 777238 mrdA 439843000908 mrdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. penicillin-binding protein 2 YP_002113758.1 775337 R 439843 CDS YP_002113759.1 194735265 complement(777269..777736) 1 NC_011094.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 777736 439843000909 SeSA_A0801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. rRNA large subunit methyltransferase YP_002113759.1 777269 R 439843 CDS YP_002113760.1 194737621 complement(777740..778057) 1 NC_011094.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 778057 439843000910 SeSA_A0802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113760.1 777740 R 439843 CDS YP_002113761.1 194738220 complement(778385..778993) 1 NC_011094.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase 778993 cobC 439843000911 cobC Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-ribazole-5'-phosphate phosphatase YP_002113761.1 778385 R 439843 CDS YP_002113762.1 194737165 779090..780184 1 NC_011094.1 'cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase'; threonine-phosphate decarboxylase 780184 cobD 439843000912 cobD Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine-phosphate decarboxylase YP_002113762.1 779090 D 439843 CDS YP_002113763.1 194736509 complement(780159..780809) 1 NC_011094.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 780809 nadD 439843000913 nadD Salmonella enterica subsp. enterica serovar Schwarzengrund str. nicotinic acid mononucleotide adenylyltransferase YP_002113763.1 780159 R 439843 CDS YP_002113764.1 194736664 complement(780802..781833) 1 NC_011094.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 781833 holA 439843000914 holA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit delta YP_002113764.1 780802 R 439843 CDS YP_002113765.1 194737163 complement(781833..782423) 1 NC_011094.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 782423 439843000915 SeSA_A0807 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LPS-assembly lipoprotein RlpB YP_002113765.1 781833 R 439843 CDS YP_002113766.1 194735156 complement(782438..785020) 1 NC_011094.1 'leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase'; leucyl-tRNA synthetase 785020 leuS 439843000916 leuS Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucyl-tRNA synthetase YP_002113766.1 782438 R 439843 CDS YP_002113767.1 194736813 785308..785598 1 NC_011094.1 identified by match to protein family HMM PF08666; UxaA family hydrolase 785598 439843000917 SeSA_A0809 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UxaA family hydrolase YP_002113767.1 785308 D 439843 CDS YP_002113768.1 194735589 785621..786787 1 NC_011094.1 identified by match to protein family HMM PF04295; UxaA family hydrolase 786787 439843000918 SeSA_A0810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UxaA family hydrolase YP_002113768.1 785621 D 439843 CDS YP_002113769.1 194735971 786837..787790 1 NC_011094.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 787790 439843000919 SeSA_A0811 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-keto-3-deoxygluconate permease YP_002113769.1 786837 D 439843 CDS YP_002113770.1 194736230 787858..789786 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF06506; sigma-54 dependent transcriptional regulator 789786 439843000920 SeSA_A0812 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sigma-54 dependent transcriptional regulator YP_002113770.1 787858 D 439843 CDS YP_002113771.1 194736800 789879..790352 1 NC_011094.1 identified by match to protein family HMM PF07295; hypothetical protein 790352 439843000921 SeSA_A0813 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113771.1 789879 D 439843 CDS YP_002113772.1 194735506 complement(790438..791373) 1 NC_011094.1 'Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific'; ribonucleoside hydrolase 1 791373 rihA 439843000922 rihA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleoside hydrolase 1 YP_002113772.1 790438 R 439843 CDS YP_002113773.1 194736137 complement(791490..792215) 1 NC_011094.1 identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein 792215 gltL 439843000923 gltL Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate/aspartate ABC transporter ATP-binding protein YP_002113773.1 791490 R 439843 CDS YP_002113774.1 194738377 complement(792215..792889) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK 792889 gltK 439843000924 gltK Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate/aspartate ABC transporter permease GltK YP_002113774.1 792215 R 439843 CDS YP_002113775.1 194734571 complement(792889..793629) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ 793629 gltJ 439843000925 gltJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate/aspartate ABC transporter permease GltJ YP_002113775.1 792889 R 439843 CDS YP_002113776.1 194737342 complement(793789..794697) 1 NC_011094.1 identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit 794697 gltI 439843000927 gltI Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate and aspartate transporter subunit YP_002113776.1 793789 R 439843 CDS YP_002113777.1 194738278 complement(795052..796641) 1 NC_011094.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 796641 lnt 439843000928 lnt Salmonella enterica subsp. enterica serovar Schwarzengrund str. apolipoprotein N-acyltransferase YP_002113777.1 795052 R 439843 CDS YP_002113778.1 194735556 complement(796610..797488) 1 NC_011094.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 797488 corC 439843000929 corC Salmonella enterica subsp. enterica serovar Schwarzengrund str. magnesium and cobalt efflux protein CorC YP_002113778.1 796610 R 439843 CDS YP_002113779.1 194734762 complement(797646..798119) 1 NC_011094.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 798119 439843000930 SeSA_A0822 Salmonella enterica subsp. enterica serovar Schwarzengrund str. metalloprotease YP_002113779.1 797646 R 439843 CDS YP_002113780.1 194734814 complement(798116..799162) 1 NC_011094.1 identified by match to protein family HMM PF02562; PhoH family protein 799162 439843000931 SeSA_A0823 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PhoH family protein YP_002113780.1 798116 R 439843 CDS YP_002113781.1 194734184 complement(799367..800791) 1 NC_011094.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 800791 miaB 439843000932 miaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. (dimethylallyl)adenosine tRNA methylthiotransferase YP_002113781.1 799367 R 439843 CDS YP_002113782.1 194736144 800935..802110 1 NC_011094.1 'catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q'; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 802110 ubiF 439843000933 ubiF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002113782.1 800935 D 439843 CDS YP_002113783.1 194735723 complement(803137..803820) 1 NC_011094.1 identified by match to protein family HMM PF00665; integrase, catalytic region 803820 439843000941 SeSA_A0833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase, catalytic region YP_002113783.1 803137 R 439843 CDS YP_002113784.1 194736986 complement(803991..804392) 1 NC_011094.1 ISPsy11, transposase OrfA 804392 439843000942 SeSA_A0834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ISPsy11, transposase OrfA YP_002113784.1 803991 R 439843 CDS YP_002113785.1 194736292 complement(804490..806154) 1 NC_011094.1 'functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP'; asparagine synthetase B 806154 asnB 439843000943 asnB Salmonella enterica subsp. enterica serovar Schwarzengrund str. asparagine synthetase B YP_002113785.1 804490 R 439843 CDS YP_002113786.1 194738257 complement(806444..807196) 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase 807196 439843000944 SeSA_A0836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UMP phosphatase YP_002113786.1 806444 R 439843 CDS YP_002113787.1 194735429 complement(807243..808463) 1 NC_011094.1 identified by match to protein family HMM PF00480; N-acetylglucosamine repressor 808463 nagC 439843000945 nagC Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylglucosamine repressor YP_002113787.1 807243 R 439843 CDS YP_002113788.1 194735059 complement(808468..809622) 1 NC_011094.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 809622 nagA 439843000946 nagA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylglucosamine-6-phosphate deacetylase YP_002113788.1 808468 R 439843 CDS YP_002113789.1 194735856 complement(809682..810482) 1 NC_011094.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 810482 nagB 439843000947 nagB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucosamine-6-phosphate deaminase YP_002113789.1 809682 R 439843 CDS YP_002113790.1 194736511 810809..812761 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 812761 nagE 439843000948 nagE Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system N-acetyl glucosamine specific transporter subunit IIABC YP_002113790.1 810809 D 439843 CDS YP_002113791.1 194737128 812972..814639 1 NC_011094.1 'catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; glutaminyl-tRNA synthetase 814639 glnS 439843000949 glnS Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaminyl-tRNA synthetase YP_002113791.1 812972 D 439843 CDS YP_002113792.1 194737723 814881..814997 1 NC_011094.1 identified by glimmer; hypothetical protein 814997 439843000950 SeSA_A0842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113792.1 814881 D 439843 CDS YP_002113793.1 194738352 815300..816706 1 NC_011094.1 identified by match to protein family HMM PF03573; outer membrane porin, OprD family protein 816706 439843000951 SeSA_A0843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane porin, OprD family protein YP_002113793.1 815300 D 439843 CDS YP_002113794.1 194734717 816756..817088 1 NC_011094.1 hypothetical protein 817088 439843000952 SeSA_A0844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113794.1 816756 D 439843 CDS YP_002113795.1 194735288 complement(817137..818441) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter 818441 439843000953 SeSA_A0845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate-proton symporter YP_002113795.1 817137 R 439843 CDS YP_002113796.1 194736521 complement(818492..819631) 1 NC_011094.1 identified by match to protein family HMM TIGR02484; citrate utilization protein B 819631 439843000954 SeSA_A0846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate utilization protein B YP_002113796.1 818492 R 439843 CDS YP_002113797.1 194734267 complement(819618..821021) 1 NC_011094.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 821021 cobZ 439843000955 cobZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. tricarballylate dehydrogenase YP_002113797.1 819618 R 439843 CDS YP_002113798.1 194737445 complement(821119..822045) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 822045 439843000956 SeSA_A0848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR family transcriptional regulator YP_002113798.1 821119 R 439843 CDS YP_002113799.1 194736941 complement(822160..822612) 1 NC_011094.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 822612 fur 439843000957 fur Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferric uptake regulator YP_002113799.1 822160 R 439843 CDS YP_002113800.2 449306283 complement(822894..823424) 1 NC_011094.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin FldA 823424 fldA 439843000958 fldA Salmonella enterica subsp. enterica serovar Schwarzengrund str. flavodoxin FldA YP_002113800.2 822894 R 439843 CDS YP_002113801.1 194736295 complement(823575..823868) 1 NC_011094.1 identified by match to protein family HMM PF01402; LexA regulated protein 823868 439843000959 SeSA_A0852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LexA regulated protein YP_002113801.1 823575 R 439843 CDS YP_002113802.1 194736074 823867..823989 1 NC_011094.1 identified by glimmer; hypothetical protein 823989 439843000960 SeSA_A0851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113802.1 823867 D 439843 CDS YP_002113803.1 194735571 complement(824002..824772) 1 NC_011094.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein 824772 ybfF 439843000961 ybfF Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113803.1 824002 R 439843 CDS YP_002113804.1 194738020 824957..825499 1 NC_011094.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 825499 seqA 439843000962 seqA Salmonella enterica subsp. enterica serovar Schwarzengrund str. replication initiation regulator SeqA YP_002113804.1 824957 D 439843 CDS YP_002113805.1 194737558 825524..827164 1 NC_011094.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 827164 pgm 439843000963 pgm Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglucomutase YP_002113805.1 825524 D 439843 CDS YP_002113806.1 194736782 complement(827279..827782) 1 NC_011094.1 hypothetical protein 827782 439843000964 SeSA_A0856 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113806.1 827279 R 439843 CDS YP_002113807.1 194734114 complement(827829..829148) 1 NC_011094.1 'catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system'; putrescine transporter 829148 potE 439843000965 potE Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine transporter YP_002113807.1 827829 R 439843 CDS YP_002113808.1 194736885 complement(829145..831343) 1 NC_011094.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 831343 439843000966 SeSA_A0858 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ornithine decarboxylase YP_002113808.1 829145 R 439843 CDS YP_002113809.1 194737398 831742..831855 1 NC_011094.1 hypothetical protein 831855 439843000967 SeSA_A0859 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113809.1 831742 D 439843 CDS YP_002113810.1 194734914 complement(832106..832783) 1 NC_011094.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 832783 439843000968 SeSA_A0860 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator KdpE YP_002113810.1 832106 R 439843 CDS YP_002113811.1 194735142 complement(832780..835497) 1 NC_011094.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 835497 439843000969 SeSA_A0861 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein KdpD YP_002113811.1 832780 R 439843 CDS YP_002113812.1 194737996 complement(835494..836078) 1 NC_011094.1 'One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex'; potassium-transporting ATPase subunit C 836078 kdpC 439843000970 kdpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium-transporting ATPase subunit C YP_002113812.1 835494 R 439843 CDS YP_002113813.1 194734136 complement(836087..838135) 1 NC_011094.1 'One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions'; potassium-transporting ATPase subunit B 838135 kdpB 439843000971 kdpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium-transporting ATPase subunit B YP_002113813.1 836087 R 439843 CDS YP_002113814.1 194737630 complement(838156..839835) 1 NC_011094.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 839835 kdpA 439843000972 kdpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium-transporting ATPase subunit A YP_002113814.1 838156 R 439843 CDS YP_002113815.1 194738269 840261..840467 1 NC_011094.1 hypothetical protein 840467 439843000973 SeSA_A0865 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113815.1 840261 D 439843 CDS YP_002113816.1 194736598 840578..841999 1 NC_011094.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 841999 439843000974 SeSA_A0866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribodipyrimidine photolyase YP_002113816.1 840578 D 439843 CDS YP_002113817.1 194736313 complement(842038..843519) 1 NC_011094.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 843519 439843000975 SeSA_A0867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transporter YbgH YP_002113817.1 842038 R 439843 CDS YP_002113818.1 194735431 843848..844591 1 NC_011094.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 844591 439843000976 SeSA_A0868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase-oxidase YP_002113818.1 843848 D 439843 CDS YP_002113819.1 194737279 844607..845263 1 NC_011094.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 845263 439843000977 SeSA_A0869 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113819.1 844607 D 439843 CDS YP_002113820.1 194737707 845257..846189 1 NC_011094.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 846189 439843000978 SeSA_A0870 Salmonella enterica subsp. enterica serovar Schwarzengrund str. allophanate hydrolase subunit 2 YP_002113820.1 845257 D 439843 CDS YP_002113821.1 194734966 846179..846913 1 NC_011094.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 846913 439843000979 SeSA_A0871 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LamB/YcsF family protein YP_002113821.1 846179 D 439843 CDS YP_002113822.1 194736197 847237..847368 1 NC_011094.1 hypothetical protein 847368 439843000980 SeSA_A0872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113822.1 847237 D 439843 CDS YP_002113823.1 194737935 847428..847994 1 NC_011094.1 identified by match to protein family HMM PF00589; HbiF 847994 439843000981 SeSA_A0873 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HbiF YP_002113823.1 847428 D 439843 CDS YP_002113824.1 194735216 848833..849531 1 NC_011094.1 hypothetical protein 849531 439843000982 SeSA_A0874 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113824.1 848833 D 439843 CDS YP_002113825.1 194736939 849525..849650 1 NC_011094.1 identified by glimmer; hypothetical protein 849650 439843000983 SeSA_A0875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113825.1 849525 D 439843 CDS YP_002113826.1 194735937 849817..850968 1 NC_011094.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 850968 glf 439843000984 glf Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-galactopyranose mutase YP_002113826.1 849817 D 439843 CDS YP_002113827.1 194735918 850968..851861 1 NC_011094.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 851861 439843000985 SeSA_A0877 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002113827.1 850968 D 439843 CDS YP_002113828.1 194734004 851874..853007 1 NC_011094.1 identified by match to protein family HMM PF00534; galactosyltransferase 853007 439843000986 SeSA_A0878 Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactosyltransferase YP_002113828.1 851874 D 439843 CDS YP_002113829.1 194734583 853136..853906 1 NC_011094.1 identified by match to protein family HMM PF01061; O-antigen export system, permease 853906 439843000987 SeSA_A0879 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-antigen export system, permease YP_002113829.1 853136 D 439843 CDS YP_002113830.1 194737777 853910..854620 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter domain-containing protein 854620 439843000988 SeSA_A0880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter domain-containing protein YP_002113830.1 853910 D 439843 CDS YP_002113831.1 194736190 854714..856492 1 NC_011094.1 glycosyltransferase, cell wall biogenesis 856492 439843000989 SeSA_A0881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyltransferase, cell wall biogenesis YP_002113831.1 854714 D 439843 CDS YP_002113832.1 194736587 856742..857467 1 NC_011094.1 hypothetical protein 857467 439843000990 SeSA_A0882 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113832.1 856742 D 439843 CDS YP_002113833.1 194737098 857471..859420 1 NC_011094.1 glycosyl transferase family protein 859420 439843000991 SeSA_A0883 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002113833.1 857471 D 439843 CDS YP_002113834.1 194735886 859488..859625 1 NC_011094.1 hypothetical protein 859625 439843000992 SeSA_A0884 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113834.1 859488 D 439843 CDS YP_002113835.1 194734233 859674..860465 1 NC_011094.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 860465 439843000993 SeSA_A0885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease VIII YP_002113835.1 859674 D 439843 CDS YP_002113836.1 194734580 complement(860520..861566) 1 NC_011094.1 identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; protein AbrB 861566 439843000994 SeSA_A0886 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein AbrB YP_002113836.1 860520 R 439843 CDS YP_002113837.1 194738356 complement(861703..862986) 1 NC_011094.1 'type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH'; type II citrate synthase 862986 gltA 439843000995 gltA Salmonella enterica subsp. enterica serovar Schwarzengrund str. type II citrate synthase YP_002113837.1 861703 R 439843 CDS YP_002113838.1 194737993 863726..864130 1 NC_011094.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 864130 sdhC 439843000996 sdhC Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate dehydrogenase cytochrome b556 large membrane subunit YP_002113838.1 863726 D 439843 CDS YP_002113839.1 194733964 864124..864471 1 NC_011094.1 identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 864471 sdhD 439843000997 sdhD Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate dehydrogenase cytochrome b556 small membrane subunit YP_002113839.1 864124 D 439843 CDS YP_002113840.1 194734769 864471..866237 1 NC_011094.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 866237 sdhA 439843000998 sdhA Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate dehydrogenase flavoprotein subunit YP_002113840.1 864471 D 439843 CDS YP_002113841.1 194735281 866251..866970 1 NC_011094.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 866970 sdhB 439843000999 sdhB Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate dehydrogenase iron-sulfur subunit YP_002113841.1 866251 D 439843 CDS YP_002113842.1 194736068 867494..870295 1 NC_011094.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 870295 sucA 439843001000 sucA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-oxoglutarate dehydrogenase E1 YP_002113842.1 867494 D 439843 CDS YP_002113843.1 194736917 870310..871518 1 NC_011094.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 871518 sucB 439843001001 sucB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrolipoamide succinyltransferase YP_002113843.1 870310 D 439843 CDS YP_002113844.1 194736247 871660..872826 1 NC_011094.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 872826 sucC 439843001002 sucC Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinyl-CoA synthetase subunit beta YP_002113844.1 871660 D 439843 CDS YP_002113845.1 194737845 872826..873695 1 NC_011094.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 873695 439843001003 SeSA_A0895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinyl-CoA synthetase subunit alpha YP_002113845.1 872826 D 439843 CDS YP_002113846.1 194737449 873725..873850 1 NC_011094.1 identified by glimmer; hypothetical protein 873850 439843001004 SeSA_A0896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113846.1 873725 D 439843 CDS YP_002113847.1 194737388 873937..874062 1 NC_011094.1 identified by glimmer; hypothetical protein 874062 439843001005 SeSA_A0897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113847.1 873937 D 439843 CDS YP_002113848.1 194734913 875277..876845 1 NC_011094.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 876845 cydA 439843001006 cydA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome d ubiquinol oxidase subunit I YP_002113848.1 875277 D 439843 CDS YP_002113849.1 194734408 876861..878000 1 NC_011094.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 878000 cydB1 439843001007 cydB1 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome d ubiquinol oxidase subunit II YP_002113849.1 876861 D 439843 CDS YP_002113850.1 194736439 878015..878128 1 NC_011094.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 878128 439843001008 SeSA_A0900 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyd operon protein YbgT YP_002113850.1 878015 D 439843 CDS YP_002113851.1 194735381 878128..878421 1 NC_011094.1 identified by match to protein family HMM PF09600; match to protein family HMM TIGR02112; hypothetical protein 878421 439843001009 SeSA_A0901 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113851.1 878128 D 439843 CDS YP_002113852.1 194734387 878650..879054 1 NC_011094.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 879054 439843001010 SeSA_A0902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA thioester hydrolase YP_002113852.1 878650 D 439843 CDS YP_002113853.1 194737848 879051..879743 1 NC_011094.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 879743 tolQ 439843001011 tolQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. colicin uptake protein TolQ YP_002113853.1 879051 D 439843 CDS YP_002113854.1 194735378 879747..880175 1 NC_011094.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 880175 tolR 439843001012 tolR Salmonella enterica subsp. enterica serovar Schwarzengrund str. colicin uptake protein TolR YP_002113854.1 879747 D 439843 CDS YP_002113855.1 194737053 881532..882827 1 NC_011094.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 882827 tolB 439843001014 tolB Salmonella enterica subsp. enterica serovar Schwarzengrund str. translocation protein TolB YP_002113855.1 881532 D 439843 CDS YP_002113856.1 194735900 882862..883386 1 NC_011094.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 883386 pal 439843001015 pal Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidoglycan-associated outer membrane lipoprotein YP_002113856.1 882862 D 439843 CDS YP_002113857.1 194736266 883396..884184 1 NC_011094.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 884184 439843001016 SeSA_A0909 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tol-pal system protein YbgF YP_002113857.1 883396 D 439843 CDS YP_002113858.2 449306284 885802..886845 1 NC_011094.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 886845 nadA 439843001022 nadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinolinate synthetase YP_002113858.2 885802 D 439843 CDS YP_002113859.1 194737810 886870..887589 1 NC_011094.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; protein PnuC 887589 439843001023 SeSA_A0916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein PnuC YP_002113859.1 886870 D 439843 CDS YP_002113860.1 194734527 complement(887586..888524) 1 NC_011094.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 888524 439843001024 SeSA_A0917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc transporter ZitB YP_002113860.1 887586 R 439843 CDS YP_002113861.1 194738341 complement(888635..889021) 1 NC_011094.1 homeobox protein 889021 439843001025 SeSA_A0918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. homeobox protein YP_002113861.1 888635 R 439843 CDS YP_002113862.1 194734297 889341..890393 1 NC_011094.1 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 890393 aroG 439843001026 aroG Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_002113862.1 889341 D 439843 CDS YP_002113863.1 194735003 890547..891626 1 NC_011094.1 identified by match to protein family HMM PF01032; ABC transporter permease 891626 439843001027 SeSA_A0920 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002113863.1 890547 D 439843 CDS YP_002113864.1 194737803 891626..892402 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 892402 439843001028 SeSA_A0921 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113864.1 891626 D 439843 CDS YP_002113865.1 194734747 complement(892493..893245) 1 NC_011094.1 '2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate'; phosphoglyceromutase 893245 gpmA 439843001029 gpmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglyceromutase YP_002113865.1 892493 R 439843 CDS YP_002113866.1 194738137 complement(893469..894509) 1 NC_011094.1 'catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose'; aldose 1-epimerase 894509 galM 439843001030 galM Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldose 1-epimerase YP_002113866.1 893469 R 439843 CDS YP_002113867.1 194734125 complement(894503..895651) 1 NC_011094.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 895651 galK 439843001031 galK Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactokinase YP_002113867.1 894503 R 439843 CDS YP_002113868.1 194736827 complement(895654..896700) 1 NC_011094.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 896700 galT 439843001032 galT Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactose-1-phosphate uridylyltransferase YP_002113868.1 895654 R 439843 CDS YP_002113869.1 194737322 complement(896711..897727) 1 NC_011094.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase 897727 galE 439843001033 galE Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-galactose-4-epimerase YP_002113869.1 896711 R 439843 CDS YP_002113870.1 194737516 complement(897950..898858) 1 NC_011094.1 hypothetical protein 898858 439843001034 SeSA_A0927 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113870.1 897950 R 439843 CDS YP_002113871.1 194737990 complement(899029..900504) 1 NC_011094.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF 900504 439843001035 SeSA_A0928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdenum transport ATP-binding protein ModF YP_002113871.1 899029 R 439843 CDS YP_002113872.1 194736128 complement(900572..901360) 1 NC_011094.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 901360 439843001036 SeSA_A0929 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator ModE YP_002113872.1 900572 R 439843 CDS YP_002113873.1 194735649 901489..901638 1 NC_011094.1 hypothetical protein 901638 439843001037 SeSA_A0930 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113873.1 901489 D 439843 CDS YP_002113874.1 194735602 901805..902578 1 NC_011094.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 902578 modA 439843001038 modA Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdate transporter periplasmic protein YP_002113874.1 901805 D 439843 CDS YP_002113875.1 194735737 902578..903267 1 NC_011094.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 903267 modB 439843001039 modB Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdate ABC transporter permease YP_002113875.1 902578 D 439843 CDS YP_002113876.1 194735206 903270..904328 1 NC_011094.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 904328 modC 439843001040 modC Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdate transporter ATP-binding protein YP_002113876.1 903270 D 439843 CDS YP_002113877.1 194737265 complement(904329..905189) 1 NC_011094.1 'YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily'; phosphotransferase 905189 439843001041 SeSA_A0934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase YP_002113877.1 904329 R 439843 CDS YP_002113878.1 194736218 905311..906306 1 NC_011094.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 906306 439843001042 SeSA_A0935 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphogluconolactonase YP_002113878.1 905311 D 439843 CDS YP_002113879.1 194738131 complement(906450..907733) 1 NC_011094.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 907733 439843001043 SeSA_A0936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pectinesterase YP_002113879.1 906450 R 439843 CDS YP_002113880.1 194737656 907971..909194 1 NC_011094.1 'catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway'; imidazolonepropionase 909194 hutI 439843001044 hutI Salmonella enterica subsp. enterica serovar Schwarzengrund str. imidazolonepropionase YP_002113880.1 907971 D 439843 CDS YP_002113881.1 194734214 909191..910132 1 NC_011094.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 910132 hutG 439843001045 hutG Salmonella enterica subsp. enterica serovar Schwarzengrund str. formimidoylglutamase YP_002113881.1 909191 D 439843 CDS YP_002113882.1 194734858 910177..910902 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 910902 hutC 439843001046 hutC Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine utilization repressor YP_002113882.1 910177 D 439843 CDS YP_002113883.1 194735125 911099..912784 1 NC_011094.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 912784 hutU 439843001047 hutU Salmonella enterica subsp. enterica serovar Schwarzengrund str. urocanate hydratase YP_002113883.1 911099 D 439843 CDS YP_002113884.1 194736063 912786..914306 1 NC_011094.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 914306 hutH 439843001048 hutH Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine ammonia-lyase YP_002113884.1 912786 D 439843 CDS YP_002113885.1 194734484 complement(914391..914867) 1 NC_011094.1 YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein 914867 439843001049 SeSA_A0942 Salmonella enterica subsp. enterica serovar Schwarzengrund str. kinase inhibitor protein YP_002113885.1 914391 R 439843 CDS YP_002113886.1 194733984 complement(914925..916214) 1 NC_011094.1 'catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate'; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 916214 bioA 439843001050 bioA Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002113886.1 914925 R 439843 CDS YP_002113887.1 194737665 916301..917341 1 NC_011094.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 917341 bioB 439843001051 bioB Salmonella enterica subsp. enterica serovar Schwarzengrund str. biotin synthase YP_002113887.1 916301 D 439843 CDS YP_002113888.1 194734987 917338..918495 1 NC_011094.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 918495 bioF 439843001052 bioF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 8-amino-7-oxononanoate synthase YP_002113888.1 917338 D 439843 CDS YP_002113889.1 194737115 918479..919234 1 NC_011094.1 'methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth'; biotin biosynthesis protein BioC 919234 bioC 439843001053 bioC Salmonella enterica subsp. enterica serovar Schwarzengrund str. biotin biosynthesis protein BioC YP_002113889.1 918479 D 439843 CDS YP_002113890.1 194736665 919227..919913 1 NC_011094.1 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 919913 bioD 439843001054 bioD Salmonella enterica subsp. enterica serovar Schwarzengrund str. dithiobiotin synthetase YP_002113890.1 919227 D 439843 CDS YP_002113891.1 194735904 920564..922585 1 NC_011094.1 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion'; excinuclease ABC subunit B 922585 uvrB 439843001055 uvrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. excinuclease ABC subunit B YP_002113891.1 920564 D 439843 CDS YP_002113892.1 194735238 923074..925341 1 NC_011094.1 leucine-rich repeat protein 925341 439843001056 SeSA_A0949 Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine-rich repeat protein YP_002113892.1 923074 D 439843 CDS YP_002113893.1 194737354 complement(925433..926341) 1 NC_011094.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 926341 439843001057 SeSA_A0950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113893.1 925433 R 439843 CDS YP_002113894.1 194734733 926738..927727 1 NC_011094.1 'together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z'; molybdenum cofactor biosynthesis protein A 927727 moaA 439843001058 moaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdenum cofactor biosynthesis protein A YP_002113894.1 926738 D 439843 CDS YP_002113895.1 194734406 927749..928261 1 NC_011094.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 928261 moaB 439843001059 moaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdenum cofactor biosynthesis protein B YP_002113895.1 927749 D 439843 CDS YP_002113896.1 194734930 928264..928749 1 NC_011094.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 928749 moaC 439843001060 moaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdenum cofactor biosynthesis protein MoaC YP_002113896.1 928264 D 439843 CDS YP_002113897.1 194737582 928742..928987 1 NC_011094.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 928987 moaD 439843001061 moaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin synthase small subunit YP_002113897.1 928742 D 439843 CDS YP_002113898.1 194737511 928989..929441 1 NC_011094.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 929441 moaE 439843001062 moaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_002113898.1 928989 D 439843 CDS YP_002113899.1 194738102 929489..930193 1 NC_011094.1 identified by match to protein family HMM PF01027; hypothetical protein 930193 439843001063 SeSA_A0956 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113899.1 929489 D 439843 CDS YP_002113900.2 449306285 930339..931046 1 NC_011094.1 hypothetical protein 931046 439843001064 SeSA_A0957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113900.2 930339 D 439843 CDS YP_002113901.1 194736820 931235..931477 1 NC_011094.1 hypothetical protein 931477 439843001065 SeSA_A0958 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113901.1 931235 D 439843 CDS YP_002113902.1 194735592 complement(931480..932442) 1 NC_011094.1 hypothetical protein 932442 439843001066 SeSA_A0959 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113902.1 931480 R 439843 CDS YP_002113903.1 194736008 complement(932442..933683) 1 NC_011094.1 identified by match to protein family HMM PF00614; cardiolipin synthase 2 933683 439843001067 SeSA_A0960 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cardiolipin synthase 2 YP_002113903.1 932442 R 439843 CDS YP_002113904.1 194734200 complement(933680..934438) 1 NC_011094.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 934438 439843001068 SeSA_A0961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease/exonuclease/phosphatase family protein YP_002113904.1 933680 R 439843 CDS YP_002113905.1 194735391 934571..934981 1 NC_011094.1 hypothetical protein 934981 439843001069 SeSA_A0962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113905.1 934571 D 439843 CDS YP_002113906.1 194736055 complement(934943..936049) 1 NC_011094.1 identified by match to protein family HMM PF01061; ABC transporter permease 936049 439843001070 SeSA_A0963 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002113906.1 934943 R 439843 CDS YP_002113907.1 194736982 complement(936149..937279) 1 NC_011094.1 identified by match to protein family HMM PF01061; inner membrane transport permease YbhS 937279 439843001071 SeSA_A0964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport permease YbhS YP_002113907.1 936149 R 439843 CDS YP_002113908.1 194738238 complement(937272..939008) 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 939008 439843001072 SeSA_A0965 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113908.1 937272 R 439843 CDS YP_002113909.1 194736614 complement(939001..939996) 1 NC_011094.1 identified by match to protein family HMM PF00529; hypothetical protein 939996 439843001073 SeSA_A0966 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113909.1 939001 R 439843 CDS YP_002113910.1 194737243 complement(939996..940670) 1 NC_011094.1 identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator 940670 439843001074 SeSA_A0967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002113910.1 939996 R 439843 CDS YP_002113911.1 194735725 940900..942261 1 NC_011094.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 942261 439843001075 SeSA_A0968 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase RhlE YP_002113911.1 940900 D 439843 CDS YP_002113912.1 194734106 942469..944613 1 NC_011094.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 944613 dinG 439843001076 dinG Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent DNA helicase DinG YP_002113912.1 942469 D 439843 CDS YP_002113913.1 194734700 944643..945617 1 NC_011094.1 identified by match to protein family HMM PF02885; glycosyl transferase 945617 439843001077 SeSA_A0970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase YP_002113913.1 944643 D 439843 CDS YP_002113914.1 194737466 complement(945773..946033) 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 946033 439843001078 SeSA_A0972 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113914.1 945773 R 439843 CDS YP_002113915.1 194734658 946002..946115 1 NC_011094.1 identified by glimmer; hypothetical protein 946115 439843001079 SeSA_A0971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113915.1 946002 D 439843 CDS YP_002113916.1 194735035 complement(946318..946584) 1 NC_011094.1 identified by match to protein family HMM PF01258; hypothetical protein 946584 439843001080 SeSA_A0973 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113916.1 946318 R 439843 CDS YP_002113917.1 194736599 946789..947715 1 NC_011094.1 identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 947715 439843001081 SeSA_A0974 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SAM-dependent methyltransferase YP_002113917.1 946789 D 439843 CDS YP_002113918.1 194735673 complement(947712..949934) 1 NC_011094.1 identified by match to protein family HMM PF00924; hypothetical protein 949934 439843001082 SeSA_A0975 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113918.1 947712 R 439843 CDS YP_002113919.1 194737230 complement(950053..950775) 1 NC_011094.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 950775 glnQ 439843001083 glnQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine ABC transporter ATP-binding protein YP_002113919.1 950053 R 439843 CDS YP_002113920.1 194737623 complement(950772..951431) 1 NC_011094.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 951431 glnP 439843001084 glnP Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine ABC transporter permease YP_002113920.1 950772 R 439843 CDS YP_002113921.1 194738210 complement(951577..952323) 1 NC_011094.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein 952323 glnH 439843001085 glnH Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine ABC transporter substrate-binding protein YP_002113921.1 951577 R 439843 CDS YP_002113922.1 194737879 complement(952320..952442) 1 NC_011094.1 identified by glimmer; hypothetical protein 952442 439843001086 SeSA_A0979 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113922.1 952320 R 439843 CDS YP_002113923.1 194737790 complement(952800..953303) 1 NC_011094.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 953303 439843001087 SeSA_A0980 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA starvation/stationary phase protection protein Dps YP_002113923.1 952800 R 439843 CDS YP_002113924.1 194736878 complement(953419..953577) 1 NC_011094.1 hypothetical protein 953577 439843001088 SeSA_A0981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113924.1 953419 R 439843 CDS YP_002113925.1 194738065 complement(953606..954493) 1 NC_011094.1 identified by match to protein family HMM PF00892; threonine and homoserine efflux system 954493 439843001089 SeSA_A0982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine and homoserine efflux system YP_002113925.1 953606 R 439843 CDS YP_002113926.1 194734266 954847..955362 1 NC_011094.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 955362 ompX 439843001090 ompX Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein X YP_002113926.1 954847 D 439843 CDS YP_002113927.1 194734754 complement(955425..957005) 1 NC_011094.1 identified by match to protein family HMM PF00884; hypothetical protein 957005 439843001091 SeSA_A0984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113927.1 955425 R 439843 CDS YP_002113929.1 194735963 957584..958057 1 NC_011094.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 958057 439843001092 SeSA_A0987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. manganese transport regulator MntR YP_002113929.1 957584 D 439843 CDS YP_002113930.1 194734785 complement(959210..960130) 1 NC_011094.1 identified by match to protein family HMM PF03734; hypothetical protein 960130 439843001094 SeSA_A0989 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113930.1 959210 R 439843 CDS YP_002113931.1 194734286 960350..961945 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 961945 439843001095 SeSA_A0990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002113931.1 960350 D 439843 CDS YP_002113932.1 194737992 complement(962067..963332) 1 NC_011094.1 identified by match to protein family HMM PF07350; hypothetical protein 963332 439843001096 SeSA_A0991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113932.1 962067 R 439843 CDS YP_002113933.1 194733988 963478..963591 1 NC_011094.1 identified by glimmer; hypothetical protein 963591 439843001097 SeSA_A0992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113933.1 963478 D 439843 CDS YP_002113934.1 194734482 963594..964403 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 964403 439843001098 SeSA_A0993 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar phosphatase SupH YP_002113934.1 963594 D 439843 CDS YP_002113935.1 194737513 complement(964481..966913) 1 NC_011094.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 966913 439843001099 SeSA_A0994 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate C-acetyltransferase 3 YP_002113935.1 964481 R 439843 CDS YP_002113936.1 194736429 complement(966919..967818) 1 NC_011094.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family protein 967818 439843001100 SeSA_A0995 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycyl-radical enzyme activating protein family protein YP_002113936.1 966919 R 439843 CDS YP_002113937.1 194736891 complement(968096..968845) 1 NC_011094.1 'ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase'; molybdopterin biosynthesis protein MoeB 968845 moeB 439843001101 moeB Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin biosynthesis protein MoeB YP_002113937.1 968096 R 439843 CDS YP_002113938.1 194735433 complement(968845..970080) 1 NC_011094.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 970080 moeA 439843001102 moeA Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin biosynthesis protein MoeA YP_002113938.1 968845 R 439843 CDS YP_002113939.1 194735946 970284..971225 1 NC_011094.1 identified by match to protein family HMM PF01112; L-asparaginase 971225 439843001103 SeSA_A0998 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-asparaginase YP_002113939.1 970284 D 439843 CDS YP_002113940.1 194734810 971236..973107 1 NC_011094.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 973107 439843001104 SeSA_A0999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione transporter ATP-binding protein YP_002113940.1 971236 D 439843 CDS YP_002113941.1 194737769 973140..974678 1 NC_011094.1 identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 974678 439843001105 SeSA_A1000 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-binding protein GsiB YP_002113941.1 973140 D 439843 CDS YP_002113942.1 194737415 974739..975659 1 NC_011094.1 identified by match to protein family HMM PF00528; glutathione ABC transporter permease 975659 gsiC 439843001106 gsiC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione ABC transporter permease YP_002113942.1 974739 D 439843 CDS YP_002113943.1 194738072 975662..976573 1 NC_011094.1 identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 976573 439843001107 SeSA_A1002 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione transport system permease GsiD YP_002113943.1 975662 D 439843 CDS YP_002113944.1 194734067 complement(976664..977989) 1 NC_011094.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 977989 rimO 439843001108 rimO Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S12 methylthiotransferase YP_002113944.1 976664 R 439843 CDS YP_002113945.1 194734511 978220..978603 1 NC_011094.1 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssR 978603 bssR 439843001109 bssR Salmonella enterica subsp. enterica serovar Schwarzengrund str. biofilm formation regulatory protein BssR YP_002113945.1 978220 D 439843 CDS YP_002113947.2 449306286 979739..980593 1 NC_011094.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 980593 439843001110 SeSA_A1006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein subunit beta YP_002113947.2 979739 D 439843 CDS YP_002113948.1 194737170 980604..981557 1 NC_011094.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 981557 439843001111 SeSA_A1007 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein subunit alpha YP_002113948.1 980604 D 439843 CDS YP_002113949.1 194735942 981590..981853 1 NC_011094.1 MaoC like domain-containing protein 981853 439843001112 SeSA_A1008 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MaoC like domain-containing protein YP_002113949.1 981590 D 439843 CDS YP_002113950.1 194735419 981850..983013 1 NC_011094.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 983013 439843001113 SeSA_A1009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA dehydrogenase YP_002113950.1 981850 D 439843 CDS YP_002113951.1 194737505 983462..985147 1 NC_011094.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 985147 439843001114 SeSA_A1010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein-ubiquinone oxidoreductase YP_002113951.1 983462 D 439843 CDS YP_002113952.1 194736953 complement(985153..986043) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 986043 439843001115 SeSA_A1011 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002113952.1 985153 R 439843 CDS YP_002113953.1 194737172 complement(986308..986733) 1 NC_011094.1 citrate transporter family protein 986733 439843001116 SeSA_A1012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate transporter family protein YP_002113953.1 986308 R 439843 CDS YP_002113954.1 194735646 987080..987760 1 NC_011094.1 identified by match to protein family HMM PF03811; match to protein family HMM PF07995; dehydrogenase 987760 439843001117 SeSA_A1013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dehydrogenase YP_002113954.1 987080 D 439843 CDS YP_002113955.1 194736670 complement(987757..988383) 1 NC_011094.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein 988383 439843001118 SeSA_A1014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase family protein YP_002113955.1 987757 R 439843 CDS YP_002113956.2 449306287 988627..989829 1 NC_011094.1 'penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 989829 439843001119 SeSA_A1015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine carboxypeptidase YP_002113956.2 988627 D 439843 CDS YP_002113957.1 194737571 complement(989874..990632) 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR 990632 439843001120 SeSA_A1016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor DeoR YP_002113957.1 989874 R 439843 CDS YP_002113958.1 194737937 complement(990704..991378) 1 NC_011094.1 identified by match to protein family HMM PF01569; UDP pyrophosphate phosphatase 991378 439843001121 SeSA_A1017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP pyrophosphate phosphatase YP_002113958.1 990704 R 439843 CDS YP_002113959.1 194734294 991625..992857 1 NC_011094.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 992857 439843001122 SeSA_A1018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein MdtM YP_002113959.1 991625 D 439843 CDS YP_002113960.1 194734636 complement(992911..993726) 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI 993726 439843001123 SeSA_A1019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatase YbjI YP_002113960.1 992911 R 439843 CDS YP_002113961.1 194734975 complement(993723..994934) 1 NC_011094.1 identified by match to protein family HMM PF07690; hypothetical protein 994934 439843001124 SeSA_A1020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113961.1 993723 R 439843 CDS YP_002113962.1 194735741 995102..995722 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 995722 439843001125 SeSA_A1021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, TetR family protein YP_002113962.1 995102 D 439843 CDS YP_002113963.1 194735334 complement(995839..997524) 1 NC_011094.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 997524 439843001127 SeSA_A1023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113963.1 995839 R 439843 CDS YP_002113964.2 449306288 997795..998172 1 NC_011094.1 hypothetical protein 998172 439843001128 SeSA_A1024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113964.2 997795 D 439843 CDS YP_002113965.1 194736863 complement(998204..998467) 1 NC_011094.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 998467 grxA 439843001129 grxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaredoxin YP_002113965.1 998204 R 439843 CDS YP_002113966.1 194736457 998637..998927 1 NC_011094.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 998927 439843001130 SeSA_A1026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113966.1 998637 D 439843 CDS YP_002113967.1 194737925 998911..999633 1 NC_011094.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 999633 nfsA 439843001131 nfsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitroreductase A YP_002113967.1 998911 D 439843 CDS YP_002113968.1 194737370 999691..1000593 1 NC_011094.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 1000593 rimK 439843001132 rimK Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal protein S6 modification protein YP_002113968.1 999691 D 439843 CDS YP_002113969.1 194737122 1000689..1001165 1 NC_011094.1 hypothetical protein 1001165 439843001133 SeSA_A1029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113969.1 1000689 D 439843 CDS YP_002113970.1 194736529 1001511..1002626 1 NC_011094.1 identified by match to protein family HMM PF01547; putrescine ABC transporter substrate-binding protein 1002626 439843001134 SeSA_A1030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine ABC transporter substrate-binding protein YP_002113970.1 1001511 D 439843 CDS YP_002113971.1 194738320 1002714..1003847 1 NC_011094.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 1003847 potG 439843001135 potG Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine ABC transporter ATP-binding protein YP_002113971.1 1002714 D 439843 CDS YP_002113972.1 194737836 1003857..1004810 1 NC_011094.1 identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 1004810 potH 439843001136 potH Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine ABC transporter membrane protein YP_002113972.1 1003857 D 439843 CDS YP_002113973.1 194735805 1004807..1005652 1 NC_011094.1 identified by match to protein family HMM PF00528; putrescine ABC transporter membrane protein 1005652 potI 439843001137 potI Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine ABC transporter membrane protein YP_002113973.1 1004807 D 439843 CDS YP_002113974.1 194734063 1005636..1006199 1 NC_011094.1 hypothetical protein 1006199 439843001138 SeSA_A1034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113974.1 1005636 D 439843 CDS YP_002113975.1 194734709 1006242..1007369 1 NC_011094.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1007369 rumB 439843001139 rumB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA methyluridine methyltransferase YP_002113975.1 1006242 D 439843 CDS YP_002113976.1 194737680 1007527..1007655 1 NC_011094.1 hypothetical protein 1007655 439843001140 SeSA_A1036 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113976.1 1007527 D 439843 CDS YP_002113977.1 194734597 1007664..1009007 1 NC_011094.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 1009007 439843001141 SeSA_A1037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system ascorbate-specific transporter subunit IIC YP_002113977.1 1007664 D 439843 CDS YP_008119766.1 513549383 1009037..1009357 1 NC_011094.1 hypothetical protein 1009357 439843001142 SeSA_A1038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119766.1 1009037 D 439843 CDS YP_002113978.1 194738182 1009367..1010854 1 NC_011094.1 identified by match to protein family HMM PF00884; sulfatase 1010854 439843001143 SeSA_A1039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfatase YP_002113978.1 1009367 D 439843 CDS YP_002113980.1 194737012 complement(1011061..1011792) 1 NC_011094.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 1011792 artJ 439843001144 artJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine ABC transporter substrate-binding protein YP_002113980.1 1011061 R 439843 CDS YP_002113981.1 194735510 complement(1012029..1012697) 1 NC_011094.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 1012697 artM 439843001145 artM Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine transporter permease subunit ArtM YP_002113981.1 1012029 R 439843 CDS YP_002113982.1 194735457 complement(1012697..1013413) 1 NC_011094.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 1013413 artQ 439843001146 artQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine transporter permease subunit ArtQ YP_002113982.1 1012697 R 439843 CDS YP_002113983.1 194735976 complement(1013420..1014151) 1 NC_011094.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 1014151 artI 439843001147 artI Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine ABC transporter substrate-binding protein YP_002113983.1 1013420 R 439843 CDS YP_002113984.1 194736390 complement(1014169..1014897) 1 NC_011094.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 1014897 artP 439843001148 artP Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine transporter ATP-binding subunit YP_002113984.1 1014169 R 439843 CDS YP_002113985.1 194736921 complement(1015126..1015641) 1 NC_011094.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 1015641 439843001149 SeSA_A1046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002113985.1 1015126 R 439843 CDS YP_002113986.1 194737439 1015769..1016092 1 NC_011094.1 identified by match to protein family HMM PF01906; hypothetical protein 1016092 439843001150 SeSA_A1047 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113986.1 1015769 D 439843 CDS YP_002113987.1 194736394 1016089..1016919 1 NC_011094.1 identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 1016919 439843001151 SeSA_A1048 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmuramoyl-L-alanine amidase AmiD YP_002113987.1 1016089 D 439843 CDS YP_002113988.1 194737926 complement(1016916..1017929) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 1017929 439843001152 SeSA_A1049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD dependent epimerase/dehydratase family protein YP_002113988.1 1016916 R 439843 CDS YP_002113989.1 194736876 complement(1018025..1019458) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein 1019458 439843001153 SeSA_A1050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD dependent epimerase/dehydratase family protein YP_002113989.1 1018025 R 439843 CDS YP_002113990.1 194737433 complement(1019469..1020470) 1 NC_011094.1 'low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine'; L-threonine aldolase 1020470 ltaE 439843001154 ltaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-threonine aldolase YP_002113990.1 1019469 R 439843 CDS YP_002113991.1 194737868 complement(1020509..1022227) 1 NC_011094.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 1022227 poxB 439843001155 poxB Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate dehydrogenase YP_002113991.1 1020509 R 439843 CDS YP_002113992.1 194738339 complement(1022385..1023356) 1 NC_011094.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase, NADH-dependent 1023356 hcr 439843001156 hcr Salmonella enterica subsp. enterica serovar Schwarzengrund str. HCP oxidoreductase, NADH-dependent YP_002113992.1 1022385 R 439843 CDS YP_002113993.1 194734432 complement(1023365..1025017) 1 NC_011094.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1025017 hcp 439843001157 hcp Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxylamine reductase YP_002113993.1 1023365 R 439843 CDS YP_002113995.1 194734796 complement(1025161..1026060) 1 NC_011094.1 identified by match to protein family HMM PF03956; hypothetical protein 1026060 439843001158 SeSA_A1056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113995.1 1025161 R 439843 CDS YP_002113996.1 194737327 1026261..1027919 1 NC_011094.1 nucleotide triphosphate hydrolase domain-containing protein 1027919 439843001159 SeSA_A1057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleotide triphosphate hydrolase domain-containing protein YP_002113996.1 1026261 D 439843 CDS YP_002113997.1 194736846 complement(1027916..1028866) 1 NC_011094.1 identified by match to protein family HMM PF04393; hypothetical protein 1028866 439843001160 SeSA_A1058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002113997.1 1027916 R 439843 CDS YP_002113998.1 194738152 1029012..1030130 1 NC_011094.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1030130 439843001161 SeSA_A1059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. macrolide transporter subunit MacA YP_002113998.1 1029012 D 439843 CDS YP_002113999.1 194734135 1030127..1032073 1 NC_011094.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1032073 439843001162 SeSA_A1060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. macrolide transporter ATP-binding /permease YP_002113999.1 1030127 D 439843 CDS YP_002114000.1 194734305 complement(1032203..1032424) 1 NC_011094.1 identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD 1032424 cspD 439843001163 cspD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cold shock domain-containing protein CspD YP_002114000.1 1032203 R 439843 CDS YP_002114001.1 194734739 1032748..1033068 1 NC_011094.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1033068 clpS 439843001164 clpS Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent Clp protease adaptor protein ClpS YP_002114001.1 1032748 D 439843 CDS YP_002114002.1 194736159 1033099..1035375 1 NC_011094.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1035375 clpA 439843001165 clpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent Clp protease ATP-binding subunit YP_002114002.1 1033099 D 439843 CDS YP_002114003.1 194735497 complement(1036166..1036843) 1 NC_011094.1 identified by match to protein family HMM PF00857; SlsA 1036843 439843001167 SeSA_A1065 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SlsA YP_002114003.1 1036166 R 439843 CDS YP_002114004.1 194735463 complement(1036863..1037723) 1 NC_011094.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin 1037723 439843001168 SeSA_A1066 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pirin YP_002114004.1 1036863 R 439843 CDS YP_002114005.1 194734779 1037832..1038743 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 1038743 439843001169 SeSA_A1067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002114005.1 1037832 D 439843 CDS YP_002114006.1 194734304 complement(1038834..1039052) 1 NC_011094.1 'stimulates the activities of the other two initiation factors, IF-2 and IF-3'; translation initiation factor IF-1 1039052 infA 439843001170 infA Salmonella enterica subsp. enterica serovar Schwarzengrund str. translation initiation factor IF-1 YP_002114006.1 1038834 R 439843 CDS YP_002114007.1 194737506 complement(1039364..1040068) 1 NC_011094.1 'leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys'; leucyl/phenylalanyl-tRNA--protein transferase 1040068 aat 439843001171 aat Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucyl/phenylalanyl-tRNA--protein transferase YP_002114007.1 1039364 R 439843 CDS YP_002114008.1 194736328 complement(1040113..1041834) 1 NC_011094.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1041834 439843001172 SeSA_A1070 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002114008.1 1040113 R 439843 CDS YP_002114009.1 194735666 complement(1041835..1043601) 1 NC_011094.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1043601 cydD 439843001173 cydD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002114009.1 1041835 R 439843 CDS YP_002114010.1 194735517 complement(1043716..1044684) 1 NC_011094.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 1044684 trxB 439843001174 trxB Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioredoxin reductase YP_002114010.1 1043716 R 439843 CDS YP_002114011.1 194734832 1045231..1045725 1 NC_011094.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1045725 lrp 439843001175 lrp Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine-responsive transcriptional regulator YP_002114011.1 1045231 D 439843 CDS YP_002114012.1 194735560 1045860..1049936 1 NC_011094.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1049936 439843001176 SeSA_A1074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA translocase FtsK YP_002114012.1 1045860 D 439843 CDS YP_002114013.1 194735424 1050079..1050690 1 NC_011094.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1050690 lolA 439843001177 lolA Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer-membrane lipoprotein carrier protein YP_002114013.1 1050079 D 439843 CDS YP_002114014.1 194734760 1050700..1052043 1 NC_011094.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1052043 439843001178 SeSA_A1076 Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination factor protein RarA YP_002114014.1 1050700 D 439843 CDS YP_002114015.1 194735850 1052302..1053594 1 NC_011094.1 'catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; seryl-tRNA synthetase 1053594 serS 439843001179 serS Salmonella enterica subsp. enterica serovar Schwarzengrund str. seryl-tRNA synthetase YP_002114015.1 1052302 D 439843 CDS YP_002114016.1 194738277 1053832..1056276 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1056276 439843001180 SeSA_A1078 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase subunit A YP_002114016.1 1053832 D 439843 CDS YP_002114017.1 194737930 1056287..1056904 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit 1056904 dmsB_2 439843001181 dmsB_2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dimethylsulfoxide reductase, B subunit YP_002114017.1 1056287 D 439843 CDS YP_002114018.1 194736452 1056906..1057769 1 NC_011094.1 identified by match to protein family HMM PF04976; anaerobic dimethyl sulfoxide reductase, C subunit 1057769 dmsC1 439843001182 dmsC1 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase, C subunit YP_002114018.1 1056906 D 439843 CDS YP_002114019.1 194736955 1058119..1059267 1 NC_011094.1 identified by match to protein family HMM PF07690; MFS family transporter protein 1059267 439843001183 SeSA_A1081 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MFS family transporter protein YP_002114019.1 1058119 D 439843 CDS YP_002114020.1 194735476 1059485..1060906 1 NC_011094.1 identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1060906 439843001184 SeSA_A1082 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transporter YcaM YP_002114020.1 1059485 D 439843 CDS YP_002114021.1 194735970 complement(1061198..1061995) 1 NC_011094.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1061995 pflA 439843001185 pflA Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate formate lyase-activating enzyme 1 YP_002114021.1 1061198 R 439843 CDS YP_002114022.1 194734865 1062123..1062287 1 NC_011094.1 hypothetical protein 1062287 439843001186 SeSA_A1084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114022.1 1062123 D 439843 CDS YP_002114023.2 449306289 1062571..1063530 1 NC_011094.1 identified by glimmer; hypothetical protein 1063530 439843001187 SeSA_A1085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114023.2 1062571 D 439843 CDS YP_002114024.1 194737978 complement(1063602..1065884) 1 NC_011094.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1065884 pflB2 439843001188 pflB2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate acetyltransferase YP_002114024.1 1063602 R 439843 CDS YP_002114025.1 194736658 complement(1065944..1066759) 1 NC_011094.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA 1066759 439843001189 SeSA_A1087 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate transporter FocA YP_002114025.1 1065944 R 439843 CDS YP_002114026.1 194736995 complement(1067206..1069041) 1 NC_011094.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein 1069041 439843001190 SeSA_A1088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114026.1 1067206 R 439843 CDS YP_002114027.1 194735109 1069103..1069795 1 NC_011094.1 identified by match to protein family HMM PF04239; hypothetical protein 1069795 439843001191 SeSA_A1089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114027.1 1069103 D 439843 CDS YP_002114028.1 194734606 1069981..1071069 1 NC_011094.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1071069 serC 439843001192 serC Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoserine aminotransferase YP_002114028.1 1069981 D 439843 CDS YP_002114029.1 194737397 1071140..1072423 1 NC_011094.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1072423 aroA 439843001193 aroA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-phosphoshikimate 1-carboxyvinyltransferase YP_002114029.1 1071140 D 439843 CDS YP_002114030.1 194737596 1072567..1073328 1 NC_011094.1 identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1073328 439843001194 SeSA_A1092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase M48, Ste24p YP_002114030.1 1072567 D 439843 CDS YP_002114031.1 194736413 1073501..1074184 1 NC_011094.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1074184 cmk 439843001195 cmk Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytidylate kinase YP_002114031.1 1073501 D 439843 CDS YP_002114032.1 194734164 1074298..1075971 1 NC_011094.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1075971 rpsA 439843001196 rpsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S1 YP_002114032.1 1074298 D 439843 CDS YP_002114033.1 194734686 1076127..1076411 1 NC_011094.1 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit beta 1076411 ihfB 439843001197 ihfB Salmonella enterica subsp. enterica serovar Schwarzengrund str. integration host factor subunit beta YP_002114033.1 1076127 D 439843 CDS YP_002114034.1 194735838 1076635..1078905 1 NC_011094.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1078905 439843001198 SeSA_A1097 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114034.1 1076635 D 439843 CDS YP_002114035.1 194735061 complement(1076784..1076903) 1 NC_011094.1 identified by glimmer; hypothetical protein 1076903 439843001199 SeSA_A1096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114035.1 1076784 R 439843 CDS YP_002114036.1 194734585 1078942..1080690 1 NC_011094.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1080690 msbA 439843001200 msbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid transporter ATP-binding/permease YP_002114036.1 1078942 D 439843 CDS YP_002114037.1 194737504 1080687..1081664 1 NC_011094.1 'transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate'; tetraacyldisaccharide 4'-kinase 1081664 lpxK 439843001201 lpxK Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetraacyldisaccharide 4'-kinase YP_002114037.1 1080687 D 439843 CDS YP_002114038.1 194736176 1081708..1082940 1 NC_011094.1 identified by match to protein family HMM PF06224; hypothetical protein 1082940 439843001202 SeSA_A1100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114038.1 1081708 D 439843 CDS YP_002114039.1 194733945 1082992..1083174 1 NC_011094.1 identified by match to protein family HMM PF03966; hypothetical protein 1083174 439843001203 SeSA_A1101 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114039.1 1082992 D 439843 CDS YP_002114040.1 194736600 1083171..1083917 1 NC_011094.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1083917 kdsB 439843001204 kdsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-deoxy-manno-octulosonate cytidylyltransferase YP_002114040.1 1083171 D 439843 CDS YP_002114041.1 194736912 1084128..1085021 1 NC_011094.1 hypothetical protein 1085021 439843001205 SeSA_A1103 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114041.1 1084128 D 439843 CDS YP_002114042.1 194737227 complement(1085001..1085777) 1 NC_011094.1 identified by match to protein family HMM PF02698; hypothetical protein 1085777 439843001206 SeSA_A1104 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114042.1 1085001 R 439843 CDS YP_002114043.1 194737514 1085913..1086716 1 NC_011094.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1086716 smtA 439843001207 smtA Salmonella enterica subsp. enterica serovar Schwarzengrund str. metallothionein SmtA YP_002114043.1 1085913 D 439843 CDS YP_002114044.1 194736404 1086709..1088031 1 NC_011094.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1088031 mukF 439843001208 mukF Salmonella enterica subsp. enterica serovar Schwarzengrund str. condesin subunit F YP_002114044.1 1086709 D 439843 CDS YP_002114045.1 194736582 1088012..1088716 1 NC_011094.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1088716 mukE 439843001209 mukE Salmonella enterica subsp. enterica serovar Schwarzengrund str. condesin subunit E YP_002114045.1 1088012 D 439843 CDS YP_002114046.1 194734808 1088716..1093182 1 NC_011094.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1093182 mukB 439843001210 mukB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein MukB YP_002114046.1 1088716 D 439843 CDS YP_002114047.1 194735619 1093202..1093324 1 NC_011094.1 identified by glimmer; hypothetical protein 1093324 439843001211 SeSA_A1109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114047.1 1093202 D 439843 CDS YP_002114048.1 194734245 1093527..1095374 1 NC_011094.1 identified by match to protein family HMM PF01471; hypothetical protein 1095374 439843001212 SeSA_A1110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114048.1 1093527 D 439843 CDS YP_002114049.1 194734847 1095634..1096182 1 NC_011094.1 identified by match to protein family HMM PF05951; match to protein family HMM PF08291; Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein 1096182 439843001213 SeSA_A1111 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Tat (twin-arginine translocation) pathway signal sequence domain/peptidase M15 family protein YP_002114049.1 1095634 D 439843 CDS YP_002114050.1 194737484 1096210..1096857 1 NC_011094.1 identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1096857 439843001214 SeSA_A1112 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyacylglutathione hydrolase YP_002114050.1 1096210 D 439843 CDS YP_002114051.1 194738042 complement(1096919..1098109) 1 NC_011094.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1098109 aspC 439843001215 aspC Salmonella enterica subsp. enterica serovar Schwarzengrund str. aromatic amino acid aminotransferase YP_002114051.1 1096919 R 439843 CDS YP_002114052.1 194734681 complement(1098294..1099385) 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane protein F 1099385 439843001216 SeSA_A1114 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein F YP_002114052.1 1098294 R 439843 CDS YP_002114053.1 194738134 1099711..1099839 1 NC_011094.1 identified by glimmer; hypothetical protein 1099839 439843001217 SeSA_A1115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114053.1 1099711 D 439843 CDS YP_002114054.1 194735162 complement(1099915..1100034) 1 NC_011094.1 identified by glimmer; hypothetical protein 1100034 439843001218 SeSA_A1116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114054.1 1099915 R 439843 CDS YP_002114055.1 194734630 complement(1099991..1101391) 1 NC_011094.1 'catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; asparaginyl-tRNA synthetase 1101391 asnC 439843001219 asnC Salmonella enterica subsp. enterica serovar Schwarzengrund str. asparaginyl-tRNA synthetase YP_002114055.1 1099991 R 439843 CDS YP_002114056.1 194736693 complement(1101560..1102762) 1 NC_011094.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1102762 pncB 439843001220 pncB Salmonella enterica subsp. enterica serovar Schwarzengrund str. nicotinate phosphoribosyltransferase YP_002114056.1 1101560 R 439843 CDS YP_002114057.1 194735668 1103029..1105641 1 NC_011094.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase 1105641 pepN 439843001221 pepN Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminopeptidase YP_002114057.1 1103029 D 439843 CDS YP_002114058.1 194737217 1105849..1106859 1 NC_011094.1 'catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors'; dihydroorotate dehydrogenase 2 1106859 pyrD 439843001222 pyrD Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydroorotate dehydrogenase 2 YP_002114058.1 1105849 D 439843 CDS YP_002114059.1 194734123 1107025..1107567 1 NC_011094.1 identified by match to protein family HMM PF07126; hypothetical protein 1107567 439843001223 SeSA_A1121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114059.1 1107025 D 439843 CDS YP_002114060.1 194736707 complement(1107564..1108673) 1 NC_011094.1 identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein 1108673 439843001224 SeSA_A1122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MOSC domain-containing protein YP_002114060.1 1107564 R 439843 CDS YP_002114061.1 194737689 1108772..1110880 1 NC_011094.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1110880 rlmL 439843001225 rlmL Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA m(2)G2445 methyltransferase YP_002114061.1 1108772 D 439843 CDS YP_002114062.1 194737532 1110893..1112800 1 NC_011094.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1112800 439843001226 SeSA_A1124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATPase YP_002114062.1 1110893 D 439843 CDS YP_002114063.1 194738011 1112815..1114068 1 NC_011094.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; Pqi5 1114068 439843001227 SeSA_A1126 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Pqi5 YP_002114063.1 1112815 D 439843 CDS YP_002114064.1 194737553 1114073..1115713 1 NC_011094.1 identified by match to protein family HMM PF02470; paraquat-inducible protein B 1115713 439843001228 SeSA_A1127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. paraquat-inducible protein B YP_002114064.1 1114073 D 439843 CDS YP_002114065.1 194736283 1115710..1116273 1 NC_011094.1 identified by match to protein family HMM PF03886; lipoprotein 1116273 439843001229 SeSA_A1128 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002114065.1 1115710 D 439843 CDS YP_002114066.1 194735577 complement(1116228..1116365) 1 NC_011094.1 identified by glimmer; hypothetical protein 1116365 439843001230 SeSA_A1129 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114066.1 1116228 R 439843 CDS YP_002114067.1 194736093 complement(1116796..1117314) 1 NC_011094.1 'catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP'; 3-hydroxydecanoyl-ACP dehydratase 1117314 fabA 439843001231 fabA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-hydroxydecanoyl-ACP dehydratase YP_002114067.1 1116796 R 439843 CDS YP_002114068.1 194735395 complement(1117383..1119143) 1 NC_011094.1 identified by match to protein family HMM PF05362; protease La-like protein 1119143 439843001232 SeSA_A1131 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protease La-like protein YP_002114068.1 1117383 R 439843 CDS YP_002114069.1 194737321 1119329..1119781 1 NC_011094.1 identified by match to protein family HMM PF06303; hypothetical protein 1119781 439843001233 SeSA_A1132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114069.1 1119329 D 439843 CDS YP_002114070.1 194734413 complement(1119853..1120962) 1 NC_011094.1 'OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d'; outer membrane protein A 1120962 ompA 439843001234 ompA Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein A YP_002114070.1 1119853 R 439843 CDS YP_002114071.1 194734292 complement(1121262..1121771) 1 NC_011094.1 identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor 1121771 439843001235 SeSA_A1134 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SOS cell division inhibitor YP_002114071.1 1121262 R 439843 CDS YP_002114072.1 194734303 1121988..1122593 1 NC_011094.1 identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1122593 439843001236 SeSA_A1135 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TfoX family protein YP_002114072.1 1121988 D 439843 CDS YP_002114073.1 194734798 complement(1122580..1124733) 1 NC_011094.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein 1124733 yccS 439843001237 yccS Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114073.1 1122580 R 439843 CDS YP_002114074.1 194736086 complement(1124752..1125195) 1 NC_011094.1 identified by match to protein family HMM PF03733; hypothetical protein 1125195 439843001238 SeSA_A1137 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114074.1 1124752 R 439843 CDS YP_002114075.1 194735557 1125319..1127373 1 NC_011094.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1127373 helD 439843001239 helD Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA helicase IV YP_002114075.1 1125319 D 439843 CDS YP_002114076.1 194736848 complement(1127430..1127888) 1 NC_011094.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1127888 mgsA 439843001240 mgsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. methylglyoxal synthase YP_002114076.1 1127430 R 439843 CDS YP_002114077.1 194736261 complement(1127983..1128645) 1 NC_011094.1 hypothetical protein 1128645 439843001241 SeSA_A1140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114077.1 1127983 R 439843 CDS YP_008119767.1 513549384 1128816..1129232 1 NC_011094.1 hypothetical protein 1129232 439843001242 SeSA_A1141 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119767.1 1128816 D 439843 CDS YP_002114078.1 194737477 complement(1129277..1129594) 1 NC_011094.1 identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ 1129594 439843001243 SeSA_A1142 Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein HspQ YP_002114078.1 1129277 R 439843 CDS YP_002114079.1 194736249 complement(1129652..1130863) 1 NC_011094.1 hypothetical protein 1130863 439843001244 SeSA_A1143 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114079.1 1129652 R 439843 CDS YP_002114080.1 194736723 1131078..1131626 1 NC_011094.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1131626 439843001245 SeSA_A1144 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114080.1 1131078 D 439843 CDS YP_002114081.1 194738333 1131643..1132431 1 NC_011094.1 identified by match to protein family HMM PF00165; regulatory protein 1132431 439843001246 SeSA_A1145 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002114081.1 1131643 D 439843 CDS YP_002114082.1 194734524 1132480..1132761 1 NC_011094.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1132761 439843001247 SeSA_A1146 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acylphosphatase YP_002114082.1 1132480 D 439843 CDS YP_002114083.1 194737425 complement(1132758..1133087) 1 NC_011094.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1133087 439843001248 SeSA_A1147 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfur transfer protein TusE YP_002114083.1 1132758 R 439843 CDS YP_002114084.1 194734148 complement(1133174..1133833) 1 NC_011094.1 identified by match to protein family HMM PF01027; hypothetical protein 1133833 439843001249 SeSA_A1148 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114084.1 1133174 R 439843 CDS YP_002114085.1 194735565 1133899..1134048 1 NC_011094.1 identified by glimmer; hypothetical protein 1134048 439843001250 SeSA_A1149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114085.1 1133899 D 439843 CDS YP_002114086.1 194737406 complement(1135122..1135997) 1 NC_011094.1 identified by match to protein family HMM PF00805; secreted effector protein 1135997 439843001253 SeSA_A1152 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002114086.1 1135122 R 439843 CDS YP_002114087.1 194736909 1136209..1136352 1 NC_011094.1 identified by glimmer; hypothetical protein 1136352 439843001254 SeSA_A1153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114087.1 1136209 D 439843 CDS YP_002114088.1 194734183 complement(1136544..1136885) 1 NC_011094.1 identified by match to protein family HMM PF07824; chaperone protein SigE 1136885 439843001255 SeSA_A1154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein SigE YP_002114088.1 1136544 R 439843 CDS YP_002114089.1 194734539 complement(1136902..1138587) 1 NC_011094.1 identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB 1138587 439843001256 SeSA_A1155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inositol phosphate phosphatase SopB YP_002114089.1 1136902 R 439843 CDS YP_002114090.1 194736593 1138949..1139089 1 NC_011094.1 hypothetical protein 1139089 439843001257 SeSA_A1156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114090.1 1138949 D 439843 CDS YP_002114091.1 194737041 1139121..1139306 1 NC_011094.1 identified by glimmer; hypothetical protein 1139306 439843001258 SeSA_A1157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114091.1 1139121 D 439843 CDS YP_002114092.1 194737841 complement(1139309..1140871) 1 NC_011094.1 identified by match to protein family HMM PF03577; peptidase family C69 1140871 439843001259 SeSA_A1158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase family C69 YP_002114092.1 1139309 R 439843 CDS YP_002114093.1 194738326 complement(1140951..1142315) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase subfamily protein 1142315 439843001260 SeSA_A1159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. heavy metal sensor kinase subfamily protein YP_002114093.1 1140951 R 439843 CDS YP_002114094.1 194734514 complement(1142308..1142988) 1 NC_011094.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1142988 439843001261 SeSA_A1160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein YedW YP_002114094.1 1142308 R 439843 CDS YP_002114095.1 194737332 1143124..1143534 1 NC_011094.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1143534 uraH 439843001262 uraH Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyisourate hydrolase YP_002114095.1 1143124 D 439843 CDS YP_002114096.1 194735731 complement(1143867..1144379) 1 NC_011094.1 identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component 1144379 hpaC 439843001263 hpaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxyphenylacetate 3-monooxygenase, reductase component YP_002114096.1 1143867 R 439843 CDS YP_002114097.1 194734102 complement(1144397..1145959) 1 NC_011094.1 identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 1145959 hpaB 439843001264 hpaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YP_002114097.1 1144397 R 439843 CDS YP_002114098.1 194734035 complement(1146177..1146617) 1 NC_011094.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator, HpaR 1146617 hpaR 439843001265 hpaR Salmonella enterica subsp. enterica serovar Schwarzengrund str. homoprotocatechuate degradation operon regulator, HpaR YP_002114098.1 1146177 R 439843 CDS YP_002114099.1 194738089 1146892..1148181 1 NC_011094.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase 1148181 439843001266 SeSA_A1165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional 4-hydroxyphenylacetate degradation isomerase/decarboxylase YP_002114099.1 1146892 D 439843 CDS YP_002114100.1 194734436 1148178..1149644 1 NC_011094.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1149644 hpaE 439843001267 hpaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002114100.1 1148178 D 439843 CDS YP_002114101.1 194734928 1149646..1150497 1 NC_011094.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1150497 hpaD 439843001268 hpaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_002114101.1 1149646 D 439843 CDS YP_002114102.1 194736965 1150507..1150887 1 NC_011094.1 identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1150887 hpcD 439843001269 hpcD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002114102.1 1150507 D 439843 CDS YP_002114103.1 194735094 1151031..1151834 1 NC_011094.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1151834 hpaH 439843001270 hpaH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_002114103.1 1151031 D 439843 CDS YP_002114104.1 194736536 1151845..1152636 1 NC_011094.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1152636 hpaI 439843001271 hpaI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_002114104.1 1151845 D 439843 CDS YP_002114105.1 194736359 1152709..1154085 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1154085 hpaX 439843001272 hpaX Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxyphenylacetate permease YP_002114105.1 1152709 D 439843 CDS YP_002114106.1 194737210 1154095..1154991 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1154991 hpaA 439843001273 hpaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxyphenylacetate catabolism regulatory protein HpaA YP_002114106.1 1154095 D 439843 CDS YP_002114107.1 194736694 1155005..1155943 1 NC_011094.1 identified by match to protein family HMM PF00753; hypothetical protein 1155943 439843001274 SeSA_A1173 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114107.1 1155005 D 439843 CDS YP_002114108.1 194734117 1157161..1157316 1 NC_011094.1 hypothetical protein 1157316 439843001275 SeSA_A1174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114108.1 1157161 D 439843 CDS YP_002114109.1 194737250 complement(1157367..1157672) 1 NC_011094.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1157672 439843001276 SeSA_A1175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone-modulator protein CbpM YP_002114109.1 1157367 R 439843 CDS YP_002114110.1 194735696 complement(1157672..1158592) 1 NC_011094.1 'functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock'; curved DNA-binding protein CbpA 1158592 439843001277 SeSA_A1176 Salmonella enterica subsp. enterica serovar Schwarzengrund str. curved DNA-binding protein CbpA YP_002114110.1 1157672 R 439843 CDS YP_002114111.1 194734173 1158828..1159190 1 NC_011094.1 membrane protein, suppressor for copper-sensitivity A 1159190 439843001278 SeSA_A1177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane protein, suppressor for copper-sensitivity A YP_002114111.1 1158828 D 439843 CDS YP_002114112.1 194737618 1159239..1161125 1 NC_011094.1 identified by match to protein family HMM PF02683; membrane protein, suppressor for copper-sensitivity B 1161125 439843001279 SeSA_A1178 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane protein, suppressor for copper-sensitivity B YP_002114112.1 1159239 D 439843 CDS YP_002114113.1 194738162 1161122..1161745 1 NC_011094.1 identified by match to protein family HMM PF01323; copper sensitivity supression protein 1161745 439843001280 SeSA_A1179 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper sensitivity supression protein YP_002114113.1 1161122 D 439843 CDS YP_002114114.1 194738286 1161735..1162241 1 NC_011094.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1162241 439843001281 SeSA_A1180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. suppressor for copper-sensitivity D YP_002114114.1 1161735 D 439843 CDS YP_002114115.1 194736517 1162374..1163615 1 NC_011094.1 identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1163615 439843001282 SeSA_A1181 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-1-phosphatase/inositol phosphatase YP_002114115.1 1162374 D 439843 CDS YP_002114116.1 194736739 complement(1163649..1163876) 1 NC_011094.1 hypothetical protein 1163876 439843001283 SeSA_A1182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114116.1 1163649 R 439843 CDS YP_002114117.1 194735128 complement(1163897..1164493) 1 NC_011094.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1164493 wrbA 439843001284 wrbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. TrpR binding protein WrbA YP_002114117.1 1163897 R 439843 CDS YP_002114118.1 194734770 1164693..1164851 1 NC_011094.1 hypothetical protein 1164851 439843001285 SeSA_A1184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114118.1 1164693 D 439843 CDS YP_002114119.1 194738107 1164891..1165085 1 NC_011094.1 hypothetical protein 1165085 439843001286 SeSA_A1185 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114119.1 1164891 D 439843 CDS YP_002114120.1 194737095 1165182..1165820 1 NC_011094.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1165820 439843001287 SeSA_A1186 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator RutR YP_002114120.1 1165182 D 439843 CDS YP_002114121.1 194736498 complement(1165817..1166212) 1 NC_011094.1 identified by match to protein family HMM PF07007; hypothetical protein 1166212 439843001288 SeSA_A1187 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114121.1 1165817 R 439843 CDS YP_002114122.1 194737127 complement(1166271..1170233) 1 NC_011094.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1170233 putA 439843001289 putA Salmonella enterica subsp. enterica serovar Schwarzengrund str. multifunctional functional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002114122.1 1166271 R 439843 CDS YP_002114123.1 194733910 1170655..1172163 1 NC_011094.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1172163 putP 439843001291 putP Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium/proline symporter YP_002114123.1 1170655 D 439843 CDS YP_002114124.1 194737668 complement(1173950..1174831) 1 NC_011094.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator, RpiR family protein 1174831 439843001293 SeSA_A1192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, RpiR family protein YP_002114124.1 1173950 R 439843 CDS YP_002114125.1 194738311 complement(1175116..1176612) 1 NC_011094.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter 1176612 439843001294 SeSA_A1193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium-glucose/galactose cotransporter YP_002114125.1 1175116 R 439843 CDS YP_002114126.1 194736640 complement(1176949..1177629) 1 NC_011094.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1177629 439843001295 SeSA_A1194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmannosamine-6-phosphate 2-epimerase YP_002114126.1 1176949 R 439843 CDS YP_002114127.1 194734648 1178136..1179296 1 NC_011094.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM TIGR03547; N-acetylneuraminic acid mutarotase 1179296 439843001296 SeSA_A1195 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylneuraminic acid mutarotase YP_002114127.1 1178136 D 439843 CDS YP_002114128.1 194736391 1179341..1180033 1 NC_011094.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1180033 439843001297 SeSA_A1196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligogalacturonate-specific porin YP_002114128.1 1179341 D 439843 CDS YP_002114129.1 194736971 1180316..1181596 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; sialic acid transporter 1181596 439843001298 SeSA_A1197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sialic acid transporter YP_002114129.1 1180316 D 439843 CDS YP_002114130.1 194735338 1181610..1182713 1 NC_011094.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1182713 439843001299 SeSA_A1198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YjhC YP_002114130.1 1181610 D 439843 CDS YP_002114131.1 194736017 complement(1183209..1183373) 1 NC_011094.1 identified by glimmer; hypothetical protein 1183373 439843001301 SeSA_A1201 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114131.1 1183209 R 439843 CDS YP_002114132.1 194734338 1183372..1184310 1 NC_011094.1 identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase 1184310 439843001302 SeSA_A1200 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-hydroxyacid dehydrogenase YP_002114132.1 1183372 D 439843 CDS YP_002114133.1 194734997 1184395..1185132 1 NC_011094.1 identified by match to protein family HMM PF02811; hydrolase 1185132 439843001303 SeSA_A1202 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase YP_002114133.1 1184395 D 439843 CDS YP_002114134.1 194737965 1185156..1185710 1 NC_011094.1 identified by match to protein family HMM PF06192; chaperone, TorD family protein 1185710 439843001304 SeSA_A1203 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone, TorD family protein YP_002114134.1 1185156 D 439843 CDS YP_002114135.1 194733995 1185781..1186293 1 NC_011094.1 identified by match to protein family HMM PF06496; hypothetical protein 1186293 439843001305 SeSA_A1204 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114135.1 1185781 D 439843 CDS YP_002114136.1 194735662 complement(1186332..1187165) 1 NC_011094.1 identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG 1187165 439843001306 SeSA_A1205 Salmonella enterica subsp. enterica serovar Schwarzengrund str. curli production assembly/transport component CsgG YP_002114136.1 1186332 R 439843 CDS YP_002114137.1 194735787 complement(1187192..1187608) 1 NC_011094.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 1187608 439843001307 SeSA_A1206 Salmonella enterica subsp. enterica serovar Schwarzengrund str. curli assembly protein CsgF YP_002114137.1 1187192 R 439843 CDS YP_002114138.1 194735309 complement(1187635..1188030) 1 NC_011094.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 1188030 439843001308 SeSA_A1207 Salmonella enterica subsp. enterica serovar Schwarzengrund str. curli assembly protein CsgE YP_002114138.1 1187635 R 439843 CDS YP_002114139.1 194737293 complement(1188035..1188685) 1 NC_011094.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1188685 csgD 439843001309 csgD Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator CsgD YP_002114139.1 1188035 R 439843 CDS YP_002114140.1 194734708 1189441..1189896 1 NC_011094.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1189896 csgB 439843001310 csgB Salmonella enterica subsp. enterica serovar Schwarzengrund str. curlin minor subunit YP_002114140.1 1189441 D 439843 CDS YP_002114141.1 194736345 1189938..1190393 1 NC_011094.1 identified by match to protein family HMM PF07012; cryptic curlin major subunit 1190393 439843001311 SeSA_A1210 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cryptic curlin major subunit YP_002114141.1 1189938 D 439843 CDS YP_002114142.1 194737637 1190455..1190781 1 NC_011094.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 1190781 csgC 439843001312 csgC Salmonella enterica subsp. enterica serovar Schwarzengrund str. autoagglutination protein YP_002114142.1 1190455 D 439843 CDS YP_002114143.1 194734505 1190760..1190903 1 NC_011094.1 identified by glimmer; hypothetical protein 1190903 439843001313 SeSA_A1212 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114143.1 1190760 D 439843 CDS YP_002114144.1 194734018 1190913..1191233 1 NC_011094.1 hypothetical protein 1191233 439843001314 SeSA_A1213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114144.1 1190913 D 439843 CDS YP_002114145.1 194737747 1191319..1191858 1 NC_011094.1 identified by match to protein family HMM PF01661; hypothetical protein 1191858 439843001315 SeSA_A1214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114145.1 1191319 D 439843 CDS YP_002114146.2 449306290 1191794..1193281 1 NC_011094.1 identified by match to protein family HMM PF00614; phopholipase D 1193281 439843001316 SeSA_A1215 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phopholipase D YP_002114146.2 1191794 D 439843 CDS YP_002114147.1 194738217 complement(1193298..1194452) 1 NC_011094.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1194452 mdoC 439843001317 mdoC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucans biosynthesis protein YP_002114147.1 1193298 R 439843 CDS YP_002114148.1 194736643 1194706..1196259 1 NC_011094.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1196259 mdoG 439843001318 mdoG Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucan biosynthesis protein G YP_002114148.1 1194706 D 439843 CDS YP_002114149.1 194736978 1196252..1198795 1 NC_011094.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1198795 439843001319 SeSA_A1218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucosyltransferase MdoH YP_002114149.1 1196252 D 439843 CDS YP_002114150.1 194735434 1198893..1199096 1 NC_011094.1 identified by match to protein family HMM PF07119; hypothetical protein 1199096 439843001320 SeSA_A1219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114150.1 1198893 D 439843 CDS YP_002114151.1 194735209 complement(1199097..1199471) 1 NC_011094.1 hypothetical protein 1199471 439843001321 SeSA_A1220 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114151.1 1199097 R 439843 CDS YP_002114152.1 194735879 complement(1199553..1200767) 1 NC_011094.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1200767 439843001322 SeSA_A1221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. drug efflux system protein MdtG YP_002114152.1 1199553 R 439843 CDS YP_002114153.1 194733926 complement(1200922..1201842) 1 NC_011094.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1201842 439843001323 SeSA_A1222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid A biosynthesis lauroyl acyltransferase YP_002114153.1 1200922 R 439843 CDS YP_002114154.1 194734541 1202062..1203114 1 NC_011094.1 identified by match to protein family HMM PF00581; hypothetical protein 1203114 439843001324 SeSA_A1223 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114154.1 1202062 D 439843 CDS YP_002114155.1 194735311 complement(1203166..1203741) 1 NC_011094.1 identified by match to protein family HMM PF04264; hypothetical protein 1203741 439843001325 SeSA_A1224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114155.1 1203166 R 439843 CDS YP_002114156.1 194735989 complement(1203738..1204310) 1 NC_011094.1 identified by match to protein family HMM PF01292; hypothetical protein 1204310 439843001326 SeSA_A1225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114156.1 1203738 R 439843 CDS YP_002114157.1 194735304 1204321..1204524 1 NC_011094.1 hypothetical protein 1204524 439843001327 SeSA_A1226 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114157.1 1204321 D 439843 CDS YP_002114158.1 194735857 complement(1204573..1204686) 1 NC_011094.1 hypothetical protein 1204686 439843001328 SeSA_A1227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114158.1 1204573 R 439843 CDS YP_002114159.1 194733961 complement(1204727..1205845) 1 NC_011094.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1205845 solA 439843001329 solA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-methyltryptophan oxidase YP_002114159.1 1204727 R 439843 CDS YP_002114160.1 194734534 complement(1205958..1206215) 1 NC_011094.1 'BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing'; biofilm formation regulatory protein BssS 1206215 bssS 439843001330 bssS Salmonella enterica subsp. enterica serovar Schwarzengrund str. biofilm formation regulatory protein BssS YP_002114160.1 1205958 R 439843 CDS YP_002114161.1 194737748 complement(1206502..1206747) 1 NC_011094.1 identified by match to protein family HMM PF06183; DNA damage-inducible protein I 1206747 439843001331 SeSA_A1230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA damage-inducible protein I YP_002114161.1 1206502 R 439843 CDS YP_002114162.1 194738348 complement(1206821..1207867) 1 NC_011094.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1207867 pyrC 439843001332 pyrC Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydroorotase YP_002114162.1 1206821 R 439843 CDS YP_002114163.1 194734955 complement(1207971..1208531) 1 NC_011094.1 identified by match to protein family HMM PF07273; hypothetical protein 1208531 439843001333 SeSA_A1232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114163.1 1207971 R 439843 CDS YP_002114164.1 194734424 complement(1208656..1209303) 1 NC_011094.1 cofactor involved in the reduction of disulfides; glutaredoxin 1209303 grxB 439843001334 grxB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaredoxin YP_002114164.1 1208656 R 439843 CDS YP_002114165.1 194738050 complement(1209367..1210575) 1 NC_011094.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1210575 mdtH 439843001335 mdtH Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein MdtH YP_002114165.1 1209367 R 439843 CDS YP_002114166.1 194737737 1210812..1211396 1 NC_011094.1 identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 1211396 439843001336 SeSA_A1235 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal-protein-S5-alanine N-acetyltransferase YP_002114166.1 1210812 D 439843 CDS YP_002114167.1 194736569 1211432..1212079 1 NC_011094.1 identified by match to protein family HMM PF04337; hypothetical protein 1212079 439843001337 SeSA_A1236 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114167.1 1211432 D 439843 CDS YP_002114168.1 194734468 1212081..1213004 1 NC_011094.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; virulence factor MviM-like protein 1213004 439843001338 SeSA_A1237 Salmonella enterica subsp. enterica serovar Schwarzengrund str. virulence factor MviM-like protein YP_002114168.1 1212081 D 439843 CDS YP_002114169.1 194735329 1213269..1214843 1 NC_011094.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1214843 mviN 439843001339 mviN Salmonella enterica subsp. enterica serovar Schwarzengrund str. integral membrane protein MviN YP_002114169.1 1213269 D 439843 CDS YP_002114170.1 194738338 complement(1214925..1215317) 1 NC_011094.1 identified by match to protein family HMM PF05130; flagella synthesis protein FlgN 1215317 439843001340 SeSA_A1239 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagella synthesis protein FlgN YP_002114170.1 1214925 R 439843 CDS YP_002114171.1 194734476 complement(1215352..1215645) 1 NC_011094.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1215645 439843001341 SeSA_A1240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anti-sigma-28 factor FlgM YP_002114171.1 1215352 R 439843 CDS YP_002114172.1 194737046 complement(1215737..1216396) 1 NC_011094.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1216396 flgA 439843001342 flgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body P-ring biosynthesis protein FlgA YP_002114172.1 1215737 R 439843 CDS YP_002114173.1 194737837 1216553..1216969 1 NC_011094.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1216969 flgB 439843001343 flgB Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal-body rod protein FlgB YP_002114173.1 1216553 D 439843 CDS YP_002114174.1 194737972 1216973..1217377 1 NC_011094.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1217377 flgC 439843001344 flgC Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body rod protein FlgC YP_002114174.1 1216973 D 439843 CDS YP_002114175.1 194734983 1217389..1218087 1 NC_011094.1 'acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production'; flagellar basal body rod modification protein 1218087 flgD 439843001345 flgD Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body rod modification protein YP_002114175.1 1217389 D 439843 CDS YP_002114176.1 194736988 1218114..1219325 1 NC_011094.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1219325 flgE 439843001346 flgE Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar hook protein FlgE YP_002114176.1 1218114 D 439843 CDS YP_002114177.1 194736339 1219346..1220101 1 NC_011094.1 'FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod'; flagellar basal body rod protein FlgF 1220101 flgF 439843001347 flgF Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body rod protein FlgF YP_002114177.1 1219346 D 439843 CDS YP_002114178.1 194734396 1220115..1220897 1 NC_011094.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1220897 flgG 439843001348 flgG Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body rod protein FlgG YP_002114178.1 1220115 D 439843 CDS YP_002114179.1 194734750 1220984..1221649 1 NC_011094.1 'part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod'; flagellar basal body L-ring protein 1221649 flgH 439843001349 flgH Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body L-ring protein YP_002114179.1 1220984 D 439843 CDS YP_002114180.1 194737316 1221661..1222758 1 NC_011094.1 'part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum'; flagellar basal body P-ring protein 1222758 flgI 439843001350 flgI Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body P-ring protein YP_002114180.1 1221661 D 439843 CDS YP_002114181.1 194738323 1222758..1223708 1 NC_011094.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1223708 flgJ 439843001351 flgJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar rod assembly protein/muramidase FlgJ YP_002114181.1 1222758 D 439843 CDS YP_002114182.1 194736355 1223773..1225434 1 NC_011094.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1225434 flgK 439843001352 flgK Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar hook-associated protein FlgK YP_002114182.1 1223773 D 439843 CDS YP_002114183.1 194736765 1225449..1226402 1 NC_011094.1 'with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes'; flagellar hook-associated protein FlgL 1226402 flgL 439843001353 flgL Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar hook-associated protein FlgL YP_002114183.1 1225449 D 439843 CDS YP_002114184.1 194737331 complement(1226659..1229862) 1 NC_011094.1 'bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase'; ribonuclease E 1229862 rne 439843001354 rne Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease E YP_002114184.1 1226659 R 439843 CDS YP_002114185.1 194738103 1230436..1231395 1 NC_011094.1 'catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA'; 23S rRNA pseudouridylate synthase C 1231395 439843001355 SeSA_A1255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA pseudouridylate synthase C YP_002114185.1 1230436 D 439843 CDS YP_002114186.1 194736381 1231533..1232294 1 NC_011094.1 hypothetical protein 1232294 439843001356 SeSA_A1256 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114186.1 1231533 D 439843 CDS YP_002114187.1 194734853 1232497..1232721 1 NC_011094.1 hypothetical protein 1232721 439843001357 SeSA_A1257 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114187.1 1232497 D 439843 CDS YP_002114188.1 194737473 complement(1232793..1233377) 1 NC_011094.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1233377 maf 439843001358 maf Salmonella enterica subsp. enterica serovar Schwarzengrund str. Maf-like protein YP_002114188.1 1232793 R 439843 CDS YP_002114189.1 194736315 1233575..1234096 1 NC_011094.1 identified by match to protein family HMM PF02620; hypothetical protein 1234096 439843001360 SeSA_A1260 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114189.1 1233575 D 439843 CDS YP_002114190.1 194738059 complement(1234082..1234486) 1 NC_011094.1 identified by glimmer; hypothetical protein 1234486 439843001361 SeSA_A1262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114190.1 1234082 R 439843 CDS YP_002114191.1 194736661 1234455..1235534 1 NC_011094.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1235534 plsX 439843001362 plsX Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate acyltransferase PlsX YP_002114191.1 1234455 D 439843 CDS YP_002114192.1 194736862 1235614..1236567 1 NC_011094.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1236567 fabH 439843001363 fabH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-oxoacyl-ACP synthase YP_002114192.1 1235614 D 439843 CDS YP_002114193.1 194735435 1236583..1237512 1 NC_011094.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1237512 fabD 439843001364 fabD Salmonella enterica subsp. enterica serovar Schwarzengrund str. malonyl CoA-acyl carrier protein transacylase YP_002114193.1 1236583 D 439843 CDS YP_002114194.1 194734896 1237525..1238259 1 NC_011094.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1238259 fabG 439843001365 fabG Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-ketoacyl-ACP reductase YP_002114194.1 1237525 D 439843 CDS YP_002114195.1 194737368 1238415..1238651 1 NC_011094.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1238651 acpP 439843001366 acpP Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl carrier protein YP_002114195.1 1238415 D 439843 CDS YP_002114196.1 194735687 1238737..1239978 1 NC_011094.1 'FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 1239978 fabF 439843001367 fabF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-oxoacyl-ACP synthase YP_002114196.1 1238737 D 439843 CDS YP_002114197.1 194735778 complement(1240049..1240573) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 1240573 439843001368 SeSA_A1268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002114197.1 1240049 R 439843 CDS YP_002114198.1 194736528 complement(1240588..1241109) 1 NC_011094.1 identified by match to protein family HMM PF00419; S-fimbrial adhesin protein SfaS 1241109 439843001369 SeSA_A1269 Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-fimbrial adhesin protein SfaS YP_002114198.1 1240588 R 439843 CDS YP_002114199.1 194737274 complement(1241122..1242120) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 1242120 439843001370 SeSA_A1270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002114199.1 1241122 R 439843 CDS YP_002114200.1 194737765 complement(1242158..1244713) 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 1244713 439843001371 SeSA_A1271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein SfmD YP_002114200.1 1242158 R 439843 CDS YP_002114201.1 194737410 complement(1244737..1245414) 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 1245414 439843001372 SeSA_A1272 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein FimC YP_002114201.1 1244737 R 439843 CDS YP_002114202.1 194735681 complement(1245490..1246032) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 1246032 439843001373 SeSA_A1273 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002114202.1 1245490 R 439843 CDS YP_002114203.1 194733938 1246447..1247256 1 NC_011094.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1247256 pabC 439843001374 pabC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-amino-4-deoxychorismate lyase YP_002114203.1 1246447 D 439843 CDS YP_002114204.1 194735901 1247259..1248281 1 NC_011094.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1248281 439843001375 SeSA_A1275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114204.1 1247259 D 439843 CDS YP_002114205.1 194733912 1248271..1248912 1 NC_011094.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1248912 tmk 439843001376 tmk Salmonella enterica subsp. enterica serovar Schwarzengrund str. thymidylate kinase YP_002114205.1 1248271 D 439843 CDS YP_002114206.1 194737080 1248909..1249913 1 NC_011094.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1249913 439843001377 SeSA_A1277 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit delta' YP_002114206.1 1248909 D 439843 CDS YP_002114207.1 194734591 1249924..1250721 1 NC_011094.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 1250721 439843001378 SeSA_A1278 Salmonella enterica subsp. enterica serovar Schwarzengrund str. metallodependent hydrolase YP_002114207.1 1249924 D 439843 CDS YP_002114208.1 194735242 1251016..1252449 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1252449 ptsG 439843001379 ptsG Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system glucose-specific transporter subunit IIBC YP_002114208.1 1251016 D 439843 CDS YP_002114209.1 194735888 complement(1252534..1254708) 1 NC_011094.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter 1254708 439843001380 SeSA_A1280 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferric-rhodotorulic acid outer membrane transporter YP_002114209.1 1252534 R 439843 CDS YP_002114210.1 194736719 1255032..1255409 1 NC_011094.1 identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 1255409 439843001381 SeSA_A1281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. purine nucleoside phosphoramidase YP_002114210.1 1255032 D 439843 CDS YP_002114211.1 194736228 1255412..1255786 1 NC_011094.1 identified by match to protein family HMM PF07233; outer membrane lipoprotein 1255786 439843001382 SeSA_A1282 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002114211.1 1255412 D 439843 CDS YP_002114212.1 194737688 1255800..1256438 1 NC_011094.1 identified by match to protein family HMM TIGR02722; hypothetical protein 1256438 439843001383 SeSA_A1283 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114212.1 1255800 D 439843 CDS YP_002114213.1 194738197 1256419..1257243 1 NC_011094.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1257243 thiK 439843001384 thiK Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine kinase YP_002114213.1 1256419 D 439843 CDS YP_002114214.1 194734950 1257254..1258279 1 NC_011094.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1258279 nagZ 439843001385 nagZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-hexosaminidase YP_002114214.1 1257254 D 439843 CDS YP_002114215.1 194734248 1258304..1258846 1 NC_011094.1 identified by match to protein family HMM PF05728; hypothetical protein 1258846 439843001386 SeSA_A1286 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114215.1 1258304 D 439843 CDS YP_002114216.1 194735098 1259073..1260404 1 NC_011094.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; NADH dehydrogenase 1260404 ndh 439843001387 ndh Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase YP_002114216.1 1259073 D 439843 CDS YP_002114217.1 194735753 1260583..1261122 1 NC_011094.1 identified by match to protein family HMM PF05433; hypothetical protein 1261122 439843001388 SeSA_A1288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114217.1 1260583 D 439843 CDS YP_002114218.1 194736916 complement(1261196..1261831) 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 1261831 439843001389 SeSA_A1289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, TetR family protein YP_002114218.1 1261196 R 439843 CDS YP_002114219.1 194736444 1262073..1262330 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 1262330 439843001390 SeSA_A1290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114219.1 1262073 D 439843 CDS YP_002114220.1 194734349 complement(1262427..1263392) 1 NC_011094.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM domain/ErfK/YbiS/YcfS/YnhG family protein 1263392 439843001391 SeSA_A1291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysM domain/ErfK/YbiS/YcfS/YnhG family protein YP_002114220.1 1262427 R 439843 CDS YP_002114221.1 194738344 complement(1263540..1266986) 1 NC_011094.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1266986 mfd 439843001392 mfd Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription-repair coupling factor YP_002114221.1 1263540 R 439843 CDS YP_002114222.1 194735613 1266992..1267150 1 NC_011094.1 identified by glimmer; hypothetical protein 1267150 439843001393 SeSA_A1293 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114222.1 1266992 D 439843 CDS YP_002114223.1 194734536 1267324..1268523 1 NC_011094.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1268523 lolC 439843001394 lolC Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane-specific lipoprotein transporter subunit LolC YP_002114223.1 1267324 D 439843 CDS YP_002114224.1 194735840 1268516..1269217 1 NC_011094.1 'outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone'; lipoprotein transporter ATP-binding subunit 1269217 lolD 439843001395 lolD Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein transporter ATP-binding subunit YP_002114224.1 1268516 D 439843 CDS YP_002114225.1 194734795 1269217..1270461 1 NC_011094.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1270461 lolE 439843001396 lolE Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane-specific lipoprotein transporter subunit LolE YP_002114225.1 1269217 D 439843 CDS YP_002114226.1 194736567 1270490..1271401 1 NC_011094.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1271401 nagK 439843001397 nagK Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetyl-D-glucosamine kinase YP_002114226.1 1270490 D 439843 CDS YP_002114227.1 194735957 1271420..1272241 1 NC_011094.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1272241 439843001398 SeSA_A1298 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD-dependent deacetylase YP_002114227.1 1271420 D 439843 CDS YP_002114228.1 194736209 complement(1272323..1273369) 1 NC_011094.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 1273369 potD 439843001399 potD Salmonella enterica subsp. enterica serovar Schwarzengrund str. spermidine/putrescine ABC transporter substrate-binding protein YP_002114228.1 1272323 R 439843 CDS YP_002114229.1 194736814 complement(1273394..1274173) 1 NC_011094.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease 1274173 potC 439843001400 potC Salmonella enterica subsp. enterica serovar Schwarzengrund str. spermidine/putrescine ABC transporter permease YP_002114229.1 1273394 R 439843 CDS YP_002114230.1 194737971 complement(1274276..1274398) 1 NC_011094.1 identified by glimmer; hypothetical protein 1274398 439843001401 SeSA_A1301 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114230.1 1274276 R 439843 CDS YP_002114231.1 194734056 complement(1274489..1275499) 1 NC_011094.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein 1275499 sifA 439843001402 sifA Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002114231.1 1274489 R 439843 CDS YP_002114232.1 194734735 complement(1275564..1275734) 1 NC_011094.1 hypothetical protein 1275734 439843001403 SeSA_A1303 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114232.1 1275564 R 439843 CDS YP_002114233.1 194734807 complement(1275828..1276691) 1 NC_011094.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter permease 1276691 potB 439843001404 potB Salmonella enterica subsp. enterica serovar Schwarzengrund str. spermidine/putrescine ABC transporter permease YP_002114233.1 1275828 R 439843 CDS YP_002114234.1 194736998 complement(1276675..1277811) 1 NC_011094.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1277811 potA 439843001405 potA Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine/spermidine ABC transporter ATPase YP_002114234.1 1276675 R 439843 CDS YP_002114235.1 194736371 1278062..1279291 1 NC_011094.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1279291 pepT 439843001406 pepT Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase T YP_002114235.1 1278062 D 439843 CDS YP_002114236.1 194736752 complement(1279720..1280841) 1 NC_011094.1 identified by match to protein family HMM PF08007; cupin family protein 1280841 439843001408 SeSA_A1308 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cupin family protein YP_002114236.1 1279720 R 439843 CDS YP_002114237.1 194735519 complement(1280922..1282385) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ 1282385 439843001409 SeSA_A1309 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein PhoQ YP_002114237.1 1280922 R 439843 CDS YP_002114238.1 194736162 complement(1282385..1283059) 1 NC_011094.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1283059 439843001410 SeSA_A1310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator PhoP YP_002114238.1 1282385 R 439843 CDS YP_002114239.1 194734240 complement(1283183..1284553) 1 NC_011094.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1284553 purB 439843001411 purB Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylosuccinate lyase YP_002114239.1 1283183 R 439843 CDS YP_002114240.1 194738009 complement(1284557..1285204) 1 NC_011094.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1285204 439843001412 SeSA_A1312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114240.1 1284557 R 439843 CDS YP_002114241.1 194738212 complement(1285285..1286391) 1 NC_011094.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1286391 mnmA 439843001413 mnmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-specific 2-thiouridylase MnmA YP_002114241.1 1285285 R 439843 CDS YP_002114242.1 194736483 complement(1286445..1286906) 1 NC_011094.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 1286906 439843001414 SeSA_A1314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NUDIX family hydrolase YP_002114242.1 1286445 R 439843 CDS YP_002114243.1 194737222 complement(1286918..1287247) 1 NC_011094.1 hypothetical protein 1287247 439843001415 SeSA_A1315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114243.1 1286918 R 439843 CDS YP_002114244.1 194735157 complement(1287244..1287981) 1 NC_011094.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase E 1287981 439843001416 SeSA_A1316 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal large subunit pseudouridine synthase E YP_002114244.1 1287244 R 439843 CDS YP_002114245.1 194735648 1288081..1289331 1 NC_011094.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1289331 icd 439843001417 icd Salmonella enterica subsp. enterica serovar Schwarzengrund str. isocitrate dehydrogenase YP_002114245.1 1288081 D 439843 CDS YP_002114246.1 194735640 1289495..1289623 1 NC_011094.1 identified by glimmer; hypothetical protein 1289623 439843001418 SeSA_A1318 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114246.1 1289495 D 439843 CDS YP_002114247.1 194736146 1289777..1290901 1 NC_011094.1 bacteriophage protein 1290901 439843001419 SeSA_A1319 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage protein YP_002114247.1 1289777 D 439843 CDS YP_002114249.1 194737143 complement(1291174..1291335) 1 NC_011094.1 hypothetical protein 1291335 439843001420 SeSA_A1321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114249.1 1291174 R 439843 CDS YP_002114250.1 194736365 1292378..1293106 1 NC_011094.1 identified by match to protein family HMM PF02917; pertussis toxin subunit 1 subfamily protein 1293106 439843001421 SeSA_A1322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pertussis toxin subunit 1 subfamily protein YP_002114250.1 1292378 D 439843 CDS YP_002114251.1 194738150 1293299..1293841 1 NC_011094.1 identified by match to protein family HMM PF05838; match to protein family HMM PF09374; hypothetical protein 1293841 439843001422 SeSA_A1323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114251.1 1293299 D 439843 CDS YP_002114252.1 194737353 complement(1293989..1294366) 1 NC_011094.1 identified by match to protein family HMM PF07087; hypothetical protein 1294366 439843001423 SeSA_A1324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114252.1 1293989 R 439843 CDS YP_002114253.1 194734538 complement(1294439..1295248) 1 NC_011094.1 identified by match to protein family HMM PF03372; cytolethal distending toxin B 1295248 439843001424 SeSA_A1325 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytolethal distending toxin B YP_002114253.1 1294439 R 439843 CDS YP_002114254.1 194734936 1295746..1295910 1 NC_011094.1 transposase 1295910 439843001425 SeSA_A1326 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002114254.1 1295746 D 439843 CDS YP_002114255.1 194734447 complement(1296121..1296360) 1 NC_011094.1 identified by match to protein family HMM PF06183; hypothetical protein 1296360 439843001426 SeSA_A1327 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114255.1 1296121 R 439843 CDS YP_002114256.1 194737875 complement(1296551..1297072) 1 NC_011094.1 EnvE 1297072 439843001427 SeSA_A1328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. EnvE YP_002114256.1 1296551 R 439843 CDS YP_002114257.1 194737414 complement(1297489..1297701) 1 NC_011094.1 identified by match to protein family HMM PF00313; hypothetical protein 1297701 439843001428 SeSA_A1329 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114257.1 1297489 R 439843 CDS YP_002114258.1 194736821 complement(1297833..1298096) 1 NC_011094.1 virulence protein PagD 1298096 439843001429 SeSA_A1330 Salmonella enterica subsp. enterica serovar Schwarzengrund str. virulence protein PagD YP_002114258.1 1297833 R 439843 CDS YP_002114259.1 194736208 1298145..1298336 1 NC_011094.1 hypothetical protein 1298336 439843001430 SeSA_A1331 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114259.1 1298145 D 439843 CDS YP_002114260.1 194734593 1298395..1298523 1 NC_011094.1 hypothetical protein 1298523 439843001431 SeSA_A1332 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114260.1 1298395 D 439843 CDS YP_002114261.1 194733957 1298903..1299460 1 NC_011094.1 identified by match to protein family HMM PF06316; outer membrane invasion protein 1299460 439843001432 SeSA_A1333 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane invasion protein YP_002114261.1 1298903 D 439843 CDS YP_002114262.1 194738353 complement(1300697..1301041) 1 NC_011094.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1301041 439843001435 SeSA_A1336 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysozyme inhibitor YP_002114262.1 1300697 R 439843 CDS YP_002114263.1 194737709 1301419..1301544 1 NC_011094.1 hypothetical protein 1301544 439843001436 SeSA_A1337 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114263.1 1301419 D 439843 CDS YP_002114264.1 194737116 complement(1301688..1301861) 1 NC_011094.1 hypothetical protein 1301861 439843001437 SeSA_A1338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114264.1 1301688 R 439843 CDS YP_002114265.1 194736481 1302178..1302648 1 NC_011094.1 identified by match to protein family HMM PF00011; heat shock protein 1302648 439843001438 SeSA_A1339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein YP_002114265.1 1302178 D 439843 CDS YP_002114266.1 194736503 1302987..1304030 1 NC_011094.1 hypothetical protein 1304030 439843001439 SeSA_A1340 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114266.1 1302987 D 439843 CDS YP_002114267.1 194737025 complement(1304113..1304643) 1 NC_011094.1 identified by match to protein family HMM PF01292; cytochrome B561 1304643 439843001440 SeSA_A1341 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome B561 YP_002114267.1 1304113 R 439843 CDS YP_002114268.2 449306291 complement(1304792..1305106) 1 NC_011094.1 hypothetical protein 1305106 439843001441 SeSA_A1342 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114268.2 1304792 R 439843 CDS YP_002114269.1 194734809 complement(1305198..1305356) 1 NC_011094.1 identified by glimmer; hypothetical protein 1305356 439843001442 SeSA_A1343 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114269.1 1305198 R 439843 CDS YP_002114270.1 194735599 complement(1305502..1305642) 1 NC_011094.1 identified by glimmer; hypothetical protein 1305642 439843001443 SeSA_A1344 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114270.1 1305502 R 439843 CDS YP_002114271.1 194736106 1305788..1307422 1 NC_011094.1 identified by match to protein family HMM PF00496; nickel ABC transporter substrate-binding protein 1307422 439843001444 SeSA_A1345 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nickel ABC transporter substrate-binding protein YP_002114271.1 1305788 D 439843 CDS YP_002114272.1 194736299 1307422..1308396 1 NC_011094.1 identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter permease 1308396 439843001445 SeSA_A1346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide/oligopeptide/nickel ABC transporter permease YP_002114272.1 1307422 D 439843 CDS YP_002114273.1 194736779 1308386..1309198 1 NC_011094.1 identified by match to protein family HMM PF00528; nickel/di-oligopepetide ABC transporter permease subunit 1309198 439843001446 SeSA_A1347 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nickel/di-oligopepetide ABC transporter permease subunit YP_002114273.1 1308386 D 439843 CDS YP_002114274.1 194737552 1309192..1309989 1 NC_011094.1 identified by match to protein family HMM PF00005; nickel/di-oligopepetide ABC transporter ATP binding subunit 1309989 439843001447 SeSA_A1348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nickel/di-oligopepetide ABC transporter ATP binding subunit YP_002114274.1 1309192 D 439843 CDS YP_002114275.1 194736579 1309983..1310573 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1310573 439843001448 SeSA_A1349 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002114275.1 1309983 D 439843 CDS YP_002114276.1 194735728 complement(1310655..1311788) 1 NC_011094.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS 1311788 439843001449 SeSA_A1350 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mechanosensitive ion channel protein MscS YP_002114276.1 1310655 R 439843 CDS YP_002114277.1 194735110 1311982..1312308 1 NC_011094.1 identified by match to protein family HMM PF03860; ferredoxin 1312308 439843001450 SeSA_A1351 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin YP_002114277.1 1311982 D 439843 CDS YP_002114278.1 194734627 1312502..1313152 1 NC_011094.1 identified by match to protein family HMM PF09223; hypothetical protein 1313152 439843001452 SeSA_A1353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114278.1 1312502 D 439843 CDS YP_002114279.1 194734256 1313180..1314049 1 NC_011094.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1314049 439843001453 SeSA_A1354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside resistance protein YP_002114279.1 1313180 D 439843 CDS YP_002114280.1 194737756 1314194..1314787 1 NC_011094.1 identified by match to protein family HMM PF00196; regulatory protein 1314787 439843001454 SeSA_A1355 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002114280.1 1314194 D 439843 CDS YP_002114281.1 194737264 1314856..1315704 1 NC_011094.1 identified by match to protein family HMM PF00376; transcriptional regulator 1315704 439843001455 SeSA_A1356 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002114281.1 1314856 D 439843 CDS YP_002114282.2 449306292 complement(1315959..1316207) 1 NC_011094.1 hypothetical protein 1316207 439843001456 SeSA_A1357 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114282.2 1315959 R 439843 CDS YP_002114283.1 194735126 1316523..1317068 1 NC_011094.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1317068 439843001457 SeSA_A1358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chorismate mutase YP_002114283.1 1316523 D 439843 CDS YP_002114284.1 194735181 1317265..1317903 1 NC_011094.1 identified by match to protein family HMM PF01810; leucine export protein LeuE 1317903 439843001458 SeSA_A1359 Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine export protein LeuE YP_002114284.1 1317265 D 439843 CDS YP_002114285.1 194734668 1318076..1318438 1 NC_011094.1 identified by match to protein family HMM PF09313; hypothetical protein 1318438 439843001459 SeSA_A1360 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114285.1 1318076 D 439843 CDS YP_002114286.1 194736453 1318441..1318623 1 NC_011094.1 identified by match to protein family HMM PF08956; hypothetical protein 1318623 439843001460 SeSA_A1361 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114286.1 1318441 D 439843 CDS YP_002114287.1 194738171 1318847..1319494 1 NC_011094.1 hypothetical protein 1319494 439843001461 SeSA_A1362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114287.1 1318847 D 439843 CDS YP_002114288.1 194734752 1319615..1319800 1 NC_011094.1 hypothetical protein 1319800 439843001463 SeSA_A1363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114288.1 1319615 D 439843 CDS YP_002114289.1 194734252 1319808..1320056 1 NC_011094.1 identified by match to protein family HMM PF04226; hypothetical protein 1320056 439843001464 SeSA_A1365 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114289.1 1319808 D 439843 CDS YP_002114291.1 194735682 1320489..1320740 1 NC_011094.1 identified by match to protein family HMM PF03891; hemolysin 1320740 439843001465 SeSA_A1367 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin YP_002114291.1 1320489 D 439843 CDS YP_002114292.1 194736362 1320809..1321120 1 NC_011094.1 hypothetical protein 1321120 439843001466 SeSA_A1368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114292.1 1320809 D 439843 CDS YP_002114293.1 194736780 complement(1321106..1321453) 1 NC_011094.1 identified by match to protein family HMM PF04343; hypothetical protein 1321453 439843001467 SeSA_A1369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114293.1 1321106 R 439843 CDS YP_002114294.1 194738125 complement(1321572..1322756) 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN 1322756 439843001468 SeSA_A1370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YeaN YP_002114294.1 1321572 R 439843 CDS YP_008119768.1 513549385 1322857..1323651 1 NC_011094.1 AraC family transcriptional regulator 1323651 439843001469 SeSA_A1371 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AraC family transcriptional regulator YP_008119768.1 1322857 D 439843 CDS YP_002114295.1 194737632 complement(1323631..1324077) 1 NC_011094.1 identified by match to protein family HMM PF04284; hypothetical protein 1324077 439843001470 SeSA_A1372 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114295.1 1323631 R 439843 CDS YP_002114296.1 194736753 1324079..1324216 1 NC_011094.1 hypothetical protein 1324216 439843001471 SeSA_A1373 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114296.1 1324079 D 439843 CDS YP_002114297.1 194735594 complement(1324387..1324914) 1 NC_011094.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 1324914 439843001472 SeSA_A1374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prolyl-tRNA synthetase YP_002114297.1 1324387 R 439843 CDS YP_002114298.1 194736073 complement(1324955..1326448) 1 NC_011094.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein 1326448 439843001473 SeSA_A1375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ggdef domain-containing protein YP_002114298.1 1324955 R 439843 CDS YP_002114299.1 194737480 1326836..1326970 1 NC_011094.1 hypothetical protein 1326970 439843001474 SeSA_A1376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114299.1 1326836 D 439843 CDS YP_002114300.1 194734254 complement(1327098..1328384) 1 NC_011094.1 identified by match to protein family HMM PF04285; hypothetical protein 1328384 439843001475 SeSA_A1377 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114300.1 1327098 R 439843 CDS YP_002114301.1 194736286 1328385..1328504 1 NC_011094.1 identified by glimmer; hypothetical protein 1328504 439843001476 SeSA_A1378 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114301.1 1328385 D 439843 CDS YP_002114302.1 194736737 complement(1328507..1330441) 1 NC_011094.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase, PrkA 1330441 439843001477 SeSA_A1379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine protein kinase, PrkA YP_002114302.1 1328507 R 439843 CDS YP_002114303.2 449306293 1330868..1331614 1 NC_011094.1 identified by match to protein family HMM PF06629; MltA-interacting protein 1331614 439843001478 SeSA_A1380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MltA-interacting protein YP_002114303.2 1330868 D 439843 CDS YP_002114304.1 194736621 1331904..1333100 1 NC_011094.1 chondroitin sulfate/heparin utilization regulation protein 1333100 439843001479 SeSA_A1381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chondroitin sulfate/heparin utilization regulation protein YP_002114304.1 1331904 D 439843 CDS YP_002114305.1 194734501 1333206..1334054 1 NC_011094.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family protein 1334054 439843001480 SeSA_A1382 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase, aldo/keto reductase family protein YP_002114305.1 1333206 D 439843 CDS YP_002114306.1 194734023 complement(1334153..1335037) 1 NC_011094.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 1335037 439843001481 SeSA_A1383 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldose 1-epimerase YP_002114306.1 1334153 R 439843 CDS YP_002114307.1 194734935 complement(1335366..1336361) 1 NC_011094.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 1336361 gapA 439843001482 gapA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glyceraldehyde-3-phosphate dehydrogenase YP_002114307.1 1335366 R 439843 CDS YP_002114308.1 194733920 1336703..1337116 1 NC_011094.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1337116 msrB 439843001483 msrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionine sulfoxide reductase B YP_002114308.1 1336703 D 439843 CDS YP_002114309.1 194738192 1337158..1337436 1 NC_011094.1 identified by match to protein family HMM PF07023; general negative regulator of transcription subunit 1 1337436 439843001484 SeSA_A1386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. general negative regulator of transcription subunit 1 YP_002114309.1 1337158 D 439843 CDS YP_002114310.1 194737759 complement(1337787..1338443) 1 NC_011094.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1338443 439843001485 SeSA_A1387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nicotinamidase/pyrazinamidase YP_002114310.1 1337787 R 439843 CDS YP_002114311.1 194737093 complement(1338470..1339486) 1 NC_011094.1 converts asparagine to aspartate and ammonia; asparaginase 1339486 ansA 439843001486 ansA Salmonella enterica subsp. enterica serovar Schwarzengrund str. asparaginase YP_002114311.1 1338470 R 439843 CDS YP_002114312.1 194736488 complement(1339582..1341438) 1 NC_011094.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1341438 sppA 439843001487 sppA Salmonella enterica subsp. enterica serovar Schwarzengrund str. protease 4 YP_002114312.1 1339582 R 439843 CDS YP_002114313.1 194734120 1341612..1342163 1 NC_011094.1 identified by match to protein family HMM PF00881; hypothetical protein 1342163 439843001488 SeSA_A1390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114313.1 1341612 D 439843 CDS YP_002114314.1 194735899 1342281..1343324 1 NC_011094.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1343324 selD 439843001489 selD Salmonella enterica subsp. enterica serovar Schwarzengrund str. selenophosphate synthetase YP_002114314.1 1342281 D 439843 CDS YP_002114315.1 194738358 1343329..1345278 1 NC_011094.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1345278 topB 439843001490 topB Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA topoisomerase III YP_002114315.1 1343329 D 439843 CDS YP_002114316.1 194736629 complement(1345308..1346651) 1 NC_011094.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1346651 gdhA 439843001491 gdhA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate dehydrogenase YP_002114316.1 1345308 R 439843 CDS YP_002114317.1 194734503 1346890..1347165 1 NC_011094.1 identified by match to protein family HMM PF07383; hypothetical protein 1347165 439843001492 SeSA_A1394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114317.1 1346890 D 439843 CDS YP_002114318.1 194734029 complement(1347125..1347541) 1 NC_011094.1 identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1347541 439843001493 SeSA_A1395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_002114318.1 1347125 R 439843 CDS YP_002114319.1 194733972 complement(1347614..1348420) 1 NC_011094.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1348420 xth 439843001494 xth Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease III YP_002114319.1 1347614 R 439843 CDS YP_002114320.1 194734569 1348555..1348734 1 NC_011094.1 hypothetical protein 1348734 439843001495 SeSA_A1397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114320.1 1348555 D 439843 CDS YP_002114321.1 194735228 1348866..1350092 1 NC_011094.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1350092 439843001496 SeSA_A1398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional succinylornithine transaminase/acetylornithine transaminase YP_002114321.1 1348866 D 439843 CDS YP_002114322.1 194735878 1350083..1351117 1 NC_011094.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1351117 astA 439843001497 astA Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine succinyltransferase YP_002114322.1 1350083 D 439843 CDS YP_002114323.1 194736473 1351114..1352592 1 NC_011094.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1352592 astD 439843001498 astD Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinylglutamic semialdehyde dehydrogenase YP_002114323.1 1351114 D 439843 CDS YP_002114324.1 194737218 1352589..1353932 1 NC_011094.1 'catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation'; succinylarginine dihydrolase 1353932 astB 439843001499 astB Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinylarginine dihydrolase YP_002114324.1 1352589 D 439843 CDS YP_002114325.1 194737628 1353925..1354893 1 NC_011094.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1354893 astE 439843001500 astE Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinylglutamate desuccinylase YP_002114325.1 1353925 D 439843 CDS YP_002114327.1 194735449 1355229..1355714 1 NC_011094.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1355714 spy 439843001501 spy Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114327.1 1355229 D 439843 CDS YP_002114328.1 194736134 complement(1355789..1356670) 1 NC_011094.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1356670 439843001502 SeSA_A1405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleotide excision repair endonuclease YP_002114328.1 1355789 R 439843 CDS YP_002114329.1 194734313 complement(1356791..1357618) 1 NC_011094.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1357618 nadE 439843001503 nadE Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD synthetase YP_002114329.1 1356791 R 439843 CDS YP_002114330.1 194734535 1357571..1357705 1 NC_011094.1 identified by glimmer; hypothetical protein 1357705 439843001504 SeSA_A1406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114330.1 1357571 D 439843 CDS YP_002114331.1 194737301 1357837..1358178 1 NC_011094.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1358178 osmE 439843001505 osmE Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator OsmE YP_002114331.1 1357837 D 439843 CDS YP_002114332.1 194738060 1358479..1358799 1 NC_011094.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1358799 chbB 439843001506 chbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_002114332.1 1358479 D 439843 CDS YP_002114333.1 194736376 1358882..1360240 1 NC_011094.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1360240 chbC 439843001507 chbC Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_002114333.1 1358882 D 439843 CDS YP_002114334.1 194737684 1360291..1360638 1 NC_011094.1 'catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake'; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1360638 439843001508 SeSA_A1411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_002114334.1 1360291 D 439843 CDS YP_002114335.1 194735027 1360649..1361491 1 NC_011094.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1361491 439843001509 SeSA_A1412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator ChbR YP_002114335.1 1360649 D 439843 CDS YP_002114336.1 194735432 1361616..1362971 1 NC_011094.1 identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1362971 439843001510 SeSA_A1413 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phospho-beta-glucosidase YP_002114336.1 1361616 D 439843 CDS YP_002114337.1 194735929 1362984..1363742 1 NC_011094.1 identified by match to protein family HMM PF04794; hypothetical protein 1363742 439843001511 SeSA_A1414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114337.1 1362984 D 439843 CDS YP_002114338.1 194735428 complement(1363786..1366038) 1 NC_011094.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1366038 katE 439843001512 katE Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroperoxidase II YP_002114338.1 1363786 R 439843 CDS YP_002114339.1 194735983 1366255..1366497 1 NC_011094.1 cell division modulator 1366497 439843001513 SeSA_A1416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division modulator YP_002114339.1 1366255 D 439843 CDS YP_002114340.1 194736967 complement(1366600..1367991) 1 NC_011094.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1367991 439843001514 SeSA_A1417 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium:dicarboxylate symporter family protein YP_002114340.1 1366600 R 439843 CDS YP_002114341.1 194737419 complement(1368128..1368727) 1 NC_011094.1 identified by match to protein family HMM PF04307; hypothetical protein 1368727 439843001515 SeSA_A1418 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114341.1 1368128 R 439843 CDS YP_002114342.1 194737902 complement(1368865..1369533) 1 NC_011094.1 'YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate'; 2-deoxyglucose-6-phosphatase 1369533 439843001516 SeSA_A1419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-deoxyglucose-6-phosphatase YP_002114342.1 1368865 R 439843 CDS YP_002114343.1 194734452 1369682..1370218 1 NC_011094.1 hypothetical protein 1370218 439843001517 SeSA_A1420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114343.1 1369682 D 439843 CDS YP_002114344.1 194734882 complement(1370261..1371121) 1 NC_011094.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase 1371121 439843001518 SeSA_A1421 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructosamine kinase YP_002114344.1 1370261 R 439843 CDS YP_002114345.1 194736401 complement(1371228..1371518) 1 NC_011094.1 hypothetical protein 1371518 439843001519 SeSA_A1422 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114345.1 1371228 R 439843 CDS YP_002114346.1 194734631 complement(1371615..1372547) 1 NC_011094.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase 1372547 pfkB 439843001520 pfkB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphofructokinase YP_002114346.1 1371615 R 439843 CDS YP_002114347.1 194734160 1372869..1373594 1 NC_011094.1 identified by match to protein family HMM PF04338; outer membrane protein 1373594 439843001521 SeSA_A1424 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002114347.1 1372869 D 439843 CDS YP_002114348.1 194738165 complement(1373643..1374602) 1 NC_011094.1 outer membrane protein 1374602 439843001522 SeSA_A1425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002114348.1 1373643 R 439843 CDS YP_002114349.1 194737240 1375056..1375910 1 NC_011094.1 identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1375910 439843001523 SeSA_A1427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA/RNA non-specific endonuclease YP_002114349.1 1375056 D 439843 CDS YP_002114350.1 194736705 1376170..1378098 1 NC_011094.1 'catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; threonyl-tRNA synthetase 1378098 thrS 439843001524 thrS Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonyl-tRNA synthetase YP_002114350.1 1376170 D 439843 CDS YP_002114351.1 194736284 1378210..1378644 1 NC_011094.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1378644 infC 439843001525 infC Salmonella enterica subsp. enterica serovar Schwarzengrund str. translation initiation factor IF-3 YP_002114351.1 1378210 D 439843 CDS YP_002114352.1 194735783 1378740..1378937 1 NC_011094.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1378937 rpmI 439843001526 rpmI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L35 YP_002114352.1 1378740 D 439843 CDS YP_002114353.1 194733911 1378988..1379344 1 NC_011094.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1379344 rplT 439843001527 rplT Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L20 YP_002114353.1 1378988 D 439843 CDS YP_002114354.1 194737667 1379646..1380629 1 NC_011094.1 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily'; phenylalanyl-tRNA synthetase subunit alpha 1380629 pheS 439843001528 pheS Salmonella enterica subsp. enterica serovar Schwarzengrund str. phenylalanyl-tRNA synthetase subunit alpha YP_002114354.1 1379646 D 439843 CDS YP_002114355.1 194736272 1380645..1383032 1 NC_011094.1 'catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily'; phenylalanyl-tRNA synthetase subunit beta 1383032 pheT 439843001529 pheT Salmonella enterica subsp. enterica serovar Schwarzengrund str. phenylalanyl-tRNA synthetase subunit beta YP_002114355.1 1380645 D 439843 CDS YP_002114356.1 194736601 1383037..1383336 1 NC_011094.1 'This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control'; integration host factor subunit alpha 1383336 ihfA 439843001530 ihfA Salmonella enterica subsp. enterica serovar Schwarzengrund str. integration host factor subunit alpha YP_002114356.1 1383037 D 439843 CDS YP_002114357.1 194737002 1383539..1384519 1 NC_011094.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1384519 439843001531 SeSA_A1435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. vtamin B12-transporter permease YP_002114357.1 1383539 D 439843 CDS YP_002114358.1 194736242 1384611..1385162 1 NC_011094.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1385162 btuE 439843001532 btuE Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione peroxidase YP_002114358.1 1384611 D 439843 CDS YP_002114359.1 194736020 1385174..1385911 1 NC_011094.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1385911 439843001533 SeSA_A1437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. vitamin B12-transporter ATPase YP_002114359.1 1385174 D 439843 CDS YP_002114360.1 194735392 1385988..1386452 1 NC_011094.1 identified by match to protein family HMM PF00877; NlpC (ORF-17) 1386452 439843001534 SeSA_A1438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NlpC (ORF-17) YP_002114360.1 1385988 D 439843 CDS YP_002114361.1 194737746 1386766..1387479 1 NC_011094.1 hypothetical protein 1387479 439843001535 SeSA_A1439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114361.1 1386766 D 439843 CDS YP_002114362.1 194734876 1387541..1388983 1 NC_011094.1 identified by match to protein family HMM PF02696; hypothetical protein 1388983 439843001536 SeSA_A1440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114362.1 1387541 D 439843 CDS YP_002114363.1 194737878 complement(1389019..1389210) 1 NC_011094.1 hypothetical protein 1389210 439843001537 SeSA_A1441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114363.1 1389019 R 439843 CDS YP_002114364.1 194735243 complement(1389367..1390413) 1 NC_011094.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1390413 aroH 439843001538 aroH Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_002114364.1 1389367 R 439843 CDS YP_002114365.1 194735798 complement(1390569..1391402) 1 NC_011094.1 identified by match to protein family HMM PF03618; hypothetical protein 1391402 439843001539 SeSA_A1443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114365.1 1390569 R 439843 CDS YP_002114366.1 194734976 1391739..1394117 1 NC_011094.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1394117 ppsA 439843001540 ppsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoenolpyruvate synthase YP_002114366.1 1391739 D 439843 CDS YP_002114367.1 194734036 complement(1394159..1395799) 1 NC_011094.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1395799 439843001541 SeSA_A1446 Salmonella enterica subsp. enterica serovar Schwarzengrund str. short chain acyl-CoA synthetase YP_002114367.1 1394159 R 439843 CDS YP_002114368.1 194738226 complement(1395889..1396182) 1 NC_011094.1 4Fe-4S ferredoxin 1396182 439843001542 SeSA_A1447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4Fe-4S ferredoxin YP_002114368.1 1395889 R 439843 CDS YP_002114369.1 194737729 complement(1396179..1397465) 1 NC_011094.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein 1397465 439843001543 SeSA_A1448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114369.1 1396179 R 439843 CDS YP_002114370.1 194735313 complement(1397522..1398457) 1 NC_011094.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1398457 439843001544 SeSA_A1449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein subunit YdiR YP_002114370.1 1397522 R 439843 CDS YP_002114371.1 194736515 complement(1398479..1399243) 1 NC_011094.1 'YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain'; electron transfer flavoprotein YdiQ 1399243 ydiQ 439843001545 ydiQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transfer flavoprotein YdiQ YP_002114371.1 1398479 R 439843 CDS YP_002114372.1 194737786 1399706..1400596 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883; transcriptional regulator, AraC family protein 1400596 439843001546 SeSA_A1451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, AraC family protein YP_002114372.1 1399706 D 439843 CDS YP_002114373.1 194738369 complement(1400672..1401823) 1 NC_011094.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 1401823 439843001547 SeSA_A1452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA dehydrogenase YP_002114373.1 1400672 R 439843 CDS YP_002114374.1 194735103 complement(1401837..1403432) 1 NC_011094.1 identified by match to protein family HMM PF01144; propionate CoA-transferase 1403432 439843001548 SeSA_A1453 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propionate CoA-transferase YP_002114374.1 1401837 R 439843 CDS YP_002114375.1 194734603 complement(1403586..1404344) 1 NC_011094.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1404344 aroD 439843001549 aroD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-dehydroquinate dehydratase YP_002114375.1 1403586 R 439843 CDS YP_002114376.1 194736749 complement(1404389..1405255) 1 NC_011094.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1405255 439843001550 SeSA_A1455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinate/shikimate dehydrogenase YP_002114376.1 1404389 R 439843 CDS YP_002114377.1 194736393 complement(1405322..1406557) 1 NC_011094.1 identified by match to protein family HMM PF07690; transporter major facilitator family protein 1406557 439843001551 SeSA_A1456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter major facilitator family protein YP_002114377.1 1405322 R 439843 CDS YP_002114378.1 194738034 complement(1406921..1408162) 1 NC_011094.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdiM 1408162 439843001552 SeSA_A1457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YdiM YP_002114378.1 1406921 R 439843 CDS YP_002114379.1 194737118 complement(1408272..1408631) 1 NC_011094.1 identified by match to protein family HMM PF08965; hypothetical protein 1408631 439843001553 SeSA_A1458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114379.1 1408272 R 439843 CDS YP_002114380.1 194734868 complement(1409090..1410208) 1 NC_011094.1 'YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function'; inner membrane protein 1410208 439843001555 SeSA_A1460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane protein YP_002114380.1 1409090 R 439843 CDS YP_002114381.1 194734231 1410473..1413529 1 NC_011094.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase domain-containing protein 1413529 439843001556 SeSA_A1461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. FAD linked oxidase domain-containing protein YP_002114381.1 1410473 D 439843 CDS YP_002114382.1 194736095 1413526..1413936 1 NC_011094.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1413936 439843001557 SeSA_A1462 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114382.1 1413526 D 439843 CDS YP_002114383.1 194735141 complement(1414511..1415857) 1 NC_011094.1 identified by match to protein family HMM PF00375; transporter dicarboxylate/amino acid:cation (na+ or H+) symporter (daacs) family protein 1415857 439843001560 SeSA_A1465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter dicarboxylate/amino acid:cation (na+ or H+) symporter (daacs) family protein YP_002114383.1 1414511 R 439843 CDS YP_002114384.1 194736992 1416284..1416652 1 NC_011094.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1416652 sufA 439843001561 sufA Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-sulfur cluster assembly scaffold protein YP_002114384.1 1416284 D 439843 CDS YP_002114385.1 194735936 1416661..1418148 1 NC_011094.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1418148 sufB 439843001562 sufB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desulfurase activator complex subunit SufB YP_002114385.1 1416661 D 439843 CDS YP_002114386.1 194735450 1418165..1418911 1 NC_011094.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1418911 sufC 439843001563 sufC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desulfurase YP_002114386.1 1418165 D 439843 CDS YP_002114387.1 194737662 1418886..1420157 1 NC_011094.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1420157 sufD 439843001564 sufD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desulfurase activator complex subunit SufD YP_002114387.1 1418886 D 439843 CDS YP_002114388.1 194734883 1420154..1421374 1 NC_011094.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1421374 439843001565 SeSA_A1470 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional cysteine desulfurase/selenocysteine lyase YP_002114388.1 1420154 D 439843 CDS YP_002114389.1 194736671 1421387..1421803 1 NC_011094.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1421803 439843001566 SeSA_A1471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desufuration protein SufE YP_002114389.1 1421387 D 439843 CDS YP_002114390.1 194738000 1421958..1422959 1 NC_011094.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1422959 439843001567 SeSA_A1472 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ErfK/YbiS/YcfS/YnhG family protein YP_002114390.1 1421958 D 439843 CDS YP_002114391.1 194734232 complement(1423025..1423264) 1 NC_011094.1 identified by match to protein family HMM PF04728; hypothetical protein 1423264 439843001568 SeSA_A1473 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114391.1 1423025 R 439843 CDS YP_002114392.1 194738115 complement(1423347..1423583) 1 NC_011094.1 identified by match to protein family HMM PF04728; major outer membrane lipoprotein 1423583 lpp 439843001569 lpp Salmonella enterica subsp. enterica serovar Schwarzengrund str. major outer membrane lipoprotein YP_002114392.1 1423347 R 439843 CDS YP_002114393.1 194736115 complement(1423894..1425306) 1 NC_011094.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1425306 pykF 439843001570 pykF Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate kinase YP_002114393.1 1423894 R 439843 CDS YP_002114394.1 194734175 complement(1425708..1427051) 1 NC_011094.1 identified by match to protein family HMM PF00324; amino acid transporter 1427051 439843001571 SeSA_A1476 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid transporter YP_002114394.1 1425708 R 439843 CDS YP_002114395.1 194736795 complement(1427073..1427966) 1 NC_011094.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; proline iminopeptidase like protein 1427966 439843001572 SeSA_A1477 Salmonella enterica subsp. enterica serovar Schwarzengrund str. proline iminopeptidase like protein YP_002114395.1 1427073 R 439843 CDS YP_002114396.1 194735500 complement(1428025..1428762) 1 NC_011094.1 identified by match to protein family HMM PF07090; hypothetical protein 1428762 439843001573 SeSA_A1478 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114396.1 1428025 R 439843 CDS YP_002114397.1 194738099 complement(1428774..1430000) 1 NC_011094.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein DeoR family protein 1430000 439843001574 SeSA_A1479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein DeoR family protein YP_002114397.1 1428774 R 439843 CDS YP_002114398.1 194736229 complement(1430323..1433385) 1 NC_011094.1 identified by match to protein family HMM PF01568; match to protein family HMM PF04879; tetrathionate reductase complex subunit A 1433385 439843001575 SeSA_A1480 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetrathionate reductase complex subunit A YP_002114398.1 1430323 R 439843 CDS YP_002114399.1 194734215 complement(1433378..1434400) 1 NC_011094.1 identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C 1434400 439843001576 SeSA_A1481 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetrathionate reductase complex subunit C YP_002114399.1 1433378 R 439843 CDS YP_002114400.1 194734836 complement(1434401..1435135) 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B 1435135 439843001577 SeSA_A1482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tetrathionate reductase subunit B YP_002114400.1 1434401 R 439843 CDS YP_002114401.1 194735596 1435347..1437095 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1437095 439843001578 SeSA_A1483 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor-kinase YP_002114401.1 1435347 D 439843 CDS YP_002114402.1 194736865 1437052..1437690 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1437690 439843001579 SeSA_A1484 Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator YP_002114402.1 1437052 D 439843 CDS YP_002114403.1 194734444 1437788..1438000 1 NC_011094.1 hypothetical protein 1438000 439843001580 SeSA_A1485 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114403.1 1437788 D 439843 CDS YP_002114404.1 194736152 complement(1438096..1439055) 1 NC_011094.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349; pathogenicity island protein 1439055 439843001581 SeSA_A1486 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pathogenicity island protein YP_002114404.1 1438096 R 439843 CDS YP_002114405.1 194734910 complement(1439227..1439955) 1 NC_011094.1 identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein 1439955 439843001582 SeSA_A1488 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, MerR family protein YP_002114405.1 1439227 R 439843 CDS YP_002114406.1 194737568 complement(1440134..1440772) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; EsrB 1440772 439843001583 SeSA_A1489 Salmonella enterica subsp. enterica serovar Schwarzengrund str. EsrB YP_002114406.1 1440134 R 439843 CDS YP_002114407.1 194738250 complement(1440803..1443565) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component 1443565 439843001584 SeSA_A1490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system regulator:Sensor component YP_002114407.1 1440803 R 439843 CDS YP_002114408.1 194734057 1444369..1445862 1 NC_011094.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family protein 1445862 439843001585 SeSA_A1491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion outer membrane pore, YscC/HrcC family protein YP_002114408.1 1444369 D 439843 CDS YP_002114409.1 194734685 1445855..1447054 1 NC_011094.1 identified by match to protein family HMM TIGR02500; type III secretion apparatus protein, YscD/HrpQ family protein 1447054 439843001586 SeSA_A1492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein, YscD/HrpQ family protein YP_002114409.1 1445855 D 439843 CDS YP_002114410.1 194737063 1447062..1447304 1 NC_011094.1 identified by match to protein family HMM TIGR02501; type III secretion system protein, YseE family protein 1447304 439843001587 SeSA_A1493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system protein, YseE family protein YP_002114410.1 1447062 D 439843 CDS YP_002114411.1 194734193 1447839..1448429 1 NC_011094.1 identified by match to protein family HMM PF03433; secretion system effector protein SseB 1448429 439843001588 SeSA_A1494 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system effector protein SseB YP_002114411.1 1447839 D 439843 CDS YP_002114412.1 194734854 1448384..1448899 1 NC_011094.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1448899 439843001589 SeSA_A1495 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion low calcium response chaperone LcrH/SycD YP_002114412.1 1448384 D 439843 CDS YP_002114413.1 194737731 1448902..1450356 1 NC_011094.1 identified by match to protein family HMM PF04888; translocation machinery component 1450356 439843001590 SeSA_A1496 Salmonella enterica subsp. enterica serovar Schwarzengrund str. translocation machinery component YP_002114413.1 1448902 D 439843 CDS YP_002114414.2 449306294 1450372..1450959 1 NC_011094.1 pathogenicity island 2 effector protein SseD 1450959 439843001591 SeSA_A1497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pathogenicity island 2 effector protein SseD YP_002114414.2 1450372 D 439843 CDS YP_002114415.2 449306295 1450962..1451378 1 NC_011094.1 pathogenicity island 2 effector protein SseE 1451378 439843001592 SeSA_A1498 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pathogenicity island 2 effector protein SseE YP_002114415.2 1450962 D 439843 CDS YP_002114416.1 194736990 1451436..1451864 1 NC_011094.1 identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1451864 439843001593 SeSA_A1499 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion low calcium response chaperone LcrH/SycD YP_002114416.1 1451436 D 439843 CDS YP_002114417.1 194735084 1451880..1452662 1 NC_011094.1 secretion system effector protein SseF 1452662 439843001594 SeSA_A1500 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system effector protein SseF YP_002114417.1 1451880 D 439843 CDS YP_002114418.1 194735355 1452659..1453348 1 NC_011094.1 secretion system effector protein SseG 1453348 439843001595 SeSA_A1501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system effector protein SseG YP_002114418.1 1452659 D 439843 CDS YP_002114419.1 194734094 1453441..1453656 1 NC_011094.1 identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1453656 eprI 439843001596 eprI Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus needle protein YP_002114419.1 1453441 D 439843 CDS YP_002114420.2 449306296 1453697..1453924 1 NC_011094.1 identified by match to protein family HMM TIGR02498; type III secretion system protein SsaH 1453924 439843001597 SeSA_A1503 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system protein SsaH YP_002114420.2 1453697 D 439843 CDS YP_002114421.1 194735029 1453921..1454184 1 NC_011094.1 identified by match to protein family HMM PF09525; match to protein family HMM TIGR02497; type III secretion system apparatus protein 1454184 439843001598 SeSA_A1504 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system apparatus protein YP_002114421.1 1453921 D 439843 CDS YP_002114422.1 194736650 1454181..1454930 1 NC_011094.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family protein 1454930 439843001599 SeSA_A1505 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus lipoprotein, YscJ/HrcJ family protein YP_002114422.1 1454181 D 439843 CDS YP_002114423.1 194738243 1455224..1455496 1 NC_011094.1 secretion system apparatus 1455496 439843001600 SeSA_A1506 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus YP_002114423.1 1455224 D 439843 CDS YP_002114424.1 194735880 1455493..1456167 1 NC_011094.1 identified by match to protein family HMM TIGR02499; type III secretion apparatus protein, HrpE/YscL family protein 1456167 439843001601 SeSA_A1507 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein, HrpE/YscL family protein YP_002114424.1 1455493 D 439843 CDS YP_002114425.1 194736141 1456157..1457149 1 NC_011094.1 identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1457149 439843001602 SeSA_A1508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaL YP_002114425.1 1456157 D 439843 CDS YP_002114426.1 194734604 1457207..1457575 1 NC_011094.1 secretion system apparatus protein SsaM 1457575 439843001603 SeSA_A1509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaM YP_002114426.1 1457207 D 439843 CDS YP_002114427.1 194734119 1457560..1459605 1 NC_011094.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1459605 439843001604 SeSA_A1510 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaV YP_002114427.1 1457560 D 439843 CDS YP_002114428.1 194738136 1459595..1460896 1 NC_011094.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546; type III secretion system ATPase 1460896 439843001605 SeSA_A1511 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system ATPase YP_002114428.1 1459595 D 439843 CDS YP_002114429.1 194737633 1460908..1461276 1 NC_011094.1 secretion system apparatus protein SsaO 1461276 439843001606 SeSA_A1512 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaO YP_002114429.1 1460908 D 439843 CDS YP_002114430.1 194734147 1461290..1461631 1 NC_011094.1 secretion system apparatus protein SsaP 1461631 439843001607 SeSA_A1513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaP YP_002114430.1 1461290 D 439843 CDS YP_002114431.1 194737381 1461612..1462580 1 NC_011094.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1462580 epaO 439843001608 epaO Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system protein YP_002114431.1 1461612 D 439843 CDS YP_002114432.1 194736899 1462648..1463295 1 NC_011094.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1463295 epaP 439843001609 epaP Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion system protein YP_002114432.1 1462648 D 439843 CDS YP_002114433.2 449306297 1463292..1463558 1 NC_011094.1 secretion system apparatus protein SsaS 1463558 439843001610 SeSA_A1516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaS YP_002114433.2 1463292 D 439843 CDS YP_002114434.1 194734680 1463559..1464338 1 NC_011094.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1464338 epaR 439843001611 epaR Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein SpaR/YscT/HrcT YP_002114434.1 1463559 D 439843 CDS YP_002114435.1 194734066 1464335..1465393 1 NC_011094.1 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'; secretion system apparatus protein SsaU 1465393 439843001612 SeSA_A1518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion system apparatus protein SsaU YP_002114435.1 1464335 D 439843 CDS YP_002114436.1 194738332 complement(1465876..1467249) 1 NC_011094.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1467249 439843001615 SeSA_A1521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux protein YP_002114436.1 1465876 R 439843 CDS YP_002114437.1 194737598 1467466..1468107 1 NC_011094.1 'catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine'; riboflavin synthase subunit alpha 1468107 ribE 439843001616 ribE Salmonella enterica subsp. enterica serovar Schwarzengrund str. riboflavin synthase subunit alpha YP_002114437.1 1467466 D 439843 CDS YP_002114438.1 194736258 complement(1468149..1469297) 1 NC_011094.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1469297 cfa 439843001617 cfa Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclopropane-fatty-acyl-phospholipid synthase YP_002114438.1 1468149 R 439843 CDS YP_002114439.1 194736724 complement(1469587..1470792) 1 NC_011094.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1470792 439843001618 SeSA_A1524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YdhC YP_002114439.1 1469587 R 439843 CDS YP_002114440.1 194738112 1470905..1471837 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1471837 439843001619 SeSA_A1525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002114440.1 1470905 D 439843 CDS YP_002114441.1 194735272 complement(1471834..1472859) 1 NC_011094.1 'binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers'; DNA-binding transcriptional repressor PurR 1472859 purR 439843001620 purR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor PurR YP_002114441.1 1471834 R 439843 CDS YP_002114442.1 194736173 complement(1473327..1473908) 1 NC_011094.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1473908 439843001621 SeSA_A1527 Salmonella enterica subsp. enterica serovar Schwarzengrund str. superoxide dismutase YP_002114442.1 1473327 R 439843 CDS YP_002114443.1 194734354 complement(1474035..1474856) 1 NC_011094.1 identified by match to protein family HMM PF00877; NlpC/P60 family protein 1474856 439843001622 SeSA_A1528 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NlpC/P60 family protein YP_002114443.1 1474035 R 439843 CDS YP_002114444.1 194737105 1475192..1475539 1 NC_011094.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1475539 439843001623 SeSA_A1529 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114444.1 1475192 D 439843 CDS YP_002114445.1 194736408 complement(1475490..1475615) 1 NC_011094.1 identified by glimmer; hypothetical protein 1475615 439843001624 SeSA_A1530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114445.1 1475490 R 439843 CDS YP_002114446.1 194737431 complement(1475617..1476264) 1 NC_011094.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1476264 rnt 439843001625 rnt Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease T YP_002114446.1 1475617 R 439843 CDS YP_002114447.1 194737858 complement(1476365..1476772) 1 NC_011094.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1476772 gloA 439843001626 gloA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glyoxalase I YP_002114447.1 1476365 R 439843 CDS YP_002114448.1 194734365 complement(1476841..1477938) 1 NC_011094.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1477938 nemA 439843001627 nemA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-ethylmaleimide reductase YP_002114448.1 1476841 R 439843 CDS YP_002114449.1 194737438 complement(1477997..1478596) 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 1478596 439843001628 SeSA_A1534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, TetR family protein YP_002114449.1 1477997 R 439843 CDS YP_002114450.1 194735403 1478786..1478938 1 NC_011094.1 hypothetical protein 1478938 439843001629 SeSA_A1535 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114450.1 1478786 D 439843 CDS YP_002114451.1 194734244 1478989..1479885 1 NC_011094.1 identified by match to protein family HMM PF00248; oxidoreductase YdhF 1479885 439843001630 SeSA_A1536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YdhF YP_002114451.1 1478989 D 439843 CDS YP_002114452.1 194735572 1479965..1480486 1 NC_011094.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1480486 sodC 439843001631 sodC Salmonella enterica subsp. enterica serovar Schwarzengrund str. superoxide dismutase YP_002114452.1 1479965 D 439843 CDS YP_002114453.1 194734872 complement(1480462..1482501) 1 NC_011094.1 identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein 1482501 439843001632 SeSA_A1538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fusaric acid resistance domain-containing protein YP_002114453.1 1480462 R 439843 CDS YP_002114454.1 194735533 complement(1482501..1483361) 1 NC_011094.1 identified by match to protein family HMM PF00529; auxiliary transport protein, membrane fusion protein (MFP) family protein 1483361 439843001633 SeSA_A1539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. auxiliary transport protein, membrane fusion protein (MFP) family protein YP_002114454.1 1482501 R 439843 CDS YP_002114455.1 194736120 complement(1483364..1483555) 1 NC_011094.1 identified by match to protein family HMM PF07869; hypothetical protein 1483555 439843001634 SeSA_A1540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114455.1 1483364 R 439843 CDS YP_002114456.1 194736196 1483795..1484235 1 NC_011094.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1484235 439843001635 SeSA_A1541 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator SlyA YP_002114456.1 1483795 D 439843 CDS YP_002114457.1 194736925 complement(1484283..1484750) 1 NC_011094.1 identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp 1484750 439843001636 SeSA_A1542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein pcp YP_002114457.1 1484283 R 439843 CDS YP_002114458.1 194734269 1485023..1486144 1 NC_011094.1 'catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling'; anhydro-N-acetylmuramic acid kinase 1486144 anmK 439843001637 anmK Salmonella enterica subsp. enterica serovar Schwarzengrund str. anhydro-N-acetylmuramic acid kinase YP_002114458.1 1485023 D 439843 CDS YP_002114459.1 194734783 1486238..1486561 1 NC_011094.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1486561 439843001638 SeSA_A1544 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysozyme inhibitor YP_002114459.1 1486238 D 439843 CDS YP_002114460.1 194735612 1486620..1487276 1 NC_011094.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1487276 pdxH 439843001639 pdxH Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxamine 5'-phosphate oxidase YP_002114460.1 1486620 D 439843 CDS YP_002114461.1 194735512 1487403..1488677 1 NC_011094.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1488677 tyrS 439843001640 tyrS Salmonella enterica subsp. enterica serovar Schwarzengrund str. tyrosyl-tRNA synthetase YP_002114461.1 1487403 D 439843 CDS YP_002114462.1 194734833 1488737..1489597 1 NC_011094.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1489597 439843001641 SeSA_A1547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxamine kinase YP_002114462.1 1488737 D 439843 CDS YP_002114463.1 194734274 complement(1489656..1490261) 1 NC_011094.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase 1490261 gst 439843001642 gst Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathionine S-transferase YP_002114463.1 1489656 R 439843 CDS YP_002114464.1 194737597 complement(1490366..1491871) 1 NC_011094.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 1491871 tppB 439843001643 tppB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tripeptide transporter permease YP_002114464.1 1490366 R 439843 CDS YP_002114465.1 194736991 1492050..1492217 1 NC_011094.1 identified by glimmer; hypothetical protein 1492217 439843001644 SeSA_A1550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114465.1 1492050 D 439843 CDS YP_002114466.1 194736372 complement(1492473..1493108) 1 NC_011094.1 'DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines'; endonuclease III 1493108 nth 439843001645 nth Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease III YP_002114466.1 1492473 R 439843 CDS YP_002114467.1 194735735 complement(1493108..1493800) 1 NC_011094.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1493800 439843001646 SeSA_A1552 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport complex protein RsxE YP_002114467.1 1493108 R 439843 CDS YP_002114468.1 194734486 complement(1493803..1494423) 1 NC_011094.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1494423 439843001647 SeSA_A1553 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport complex protein RnfG YP_002114468.1 1493803 R 439843 CDS YP_002114469.1 194733975 complement(1494427..1495485) 1 NC_011094.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1495485 rnfD 439843001648 rnfD Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport complex protein RnfD YP_002114469.1 1494427 R 439843 CDS YP_002114470.1 194734341 complement(1495486..1497684) 1 NC_011094.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1497684 439843001649 SeSA_A1555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport complex protein RnfC YP_002114470.1 1495486 R 439843 CDS YP_002114471.1 194738361 complement(1497677..1498255) 1 NC_011094.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1498255 rnfB 439843001650 rnfB Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport complex protein RnfB YP_002114471.1 1497677 R 439843 CDS YP_002114472.1 194737447 complement(1498255..1498836) 1 NC_011094.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E 1498836 rnfA 439843001651 rnfA Salmonella enterica subsp. enterica serovar Schwarzengrund str. Na(+)-translocating NADH-quinone reductase subunit E YP_002114472.1 1498255 R 439843 CDS YP_002114473.1 194737091 complement(1498913..1499386) 1 NC_011094.1 hypothetical protein 1499386 439843001652 SeSA_A1558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114473.1 1498913 R 439843 CDS YP_002114474.1 194735660 complement(1499442..1499657) 1 NC_011094.1 'YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes'; oriC-binding nucleoid-associated protein 1499657 439843001653 SeSA_A1559 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oriC-binding nucleoid-associated protein YP_002114474.1 1499442 R 439843 CDS YP_002114475.1 194735214 1500289..1501329 1 NC_011094.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1501329 439843001654 SeSA_A1560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YP_002114475.1 1500289 D 439843 CDS YP_002114476.1 194735508 complement(1501404..1502405) 1 NC_011094.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1502405 add 439843001655 add Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenosine deaminase YP_002114476.1 1501404 R 439843 CDS YP_002114477.1 194733937 complement(1502619..1503791) 1 NC_011094.1 identified by match to protein family HMM PF00155; protein MalY 1503791 439843001656 SeSA_A1562 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein MalY YP_002114477.1 1502619 R 439843 CDS YP_002114478.1 194738396 complement(1503801..1505393) 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; PTS system maltose and glucose-specific transporter subunits IICB 1505393 malX 439843001657 malX Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system maltose and glucose-specific transporter subunits IICB YP_002114478.1 1503801 R 439843 CDS YP_002114479.1 194737753 1505566..1506594 1 NC_011094.1 regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 1506594 439843001658 SeSA_A1564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor MalI YP_002114479.1 1505566 D 439843 CDS YP_002114480.1 194737139 complement(1506652..1508160) 1 NC_011094.1 identified by match to protein family HMM PF06097; hypothetical protein 1508160 439843001659 SeSA_A1565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114480.1 1506652 R 439843 CDS YP_002114481.1 194735502 complement(1508263..1509438) 1 NC_011094.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1509438 manA 439843001660 manA Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannose-6-phosphate isomerase YP_002114481.1 1508263 R 439843 CDS YP_002114482.1 194735303 1509638..1511284 1 NC_011094.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1511284 439843001661 SeSA_A1567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate hydratase class I, anaerobic YP_002114482.1 1509638 D 439843 CDS YP_002114483.1 194734009 1511452..1512855 1 NC_011094.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1512855 fumC 439843001662 fumC Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate hydratase YP_002114483.1 1511452 D 439843 CDS YP_002114484.1 194734192 complement(1512852..1513781) 1 NC_011094.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1513781 tus 439843001663 tus Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA replication terminus site-binding protein YP_002114484.1 1512852 R 439843 CDS YP_002114485.1 194738016 complement(1513857..1515158) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB 1515158 439843001664 SeSA_A1570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein RstB YP_002114485.1 1513857 R 439843 CDS YP_002114486.1 194737712 complement(1515270..1516970) 1 NC_011094.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1516970 439843001665 SeSA_A1571 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amidohydrolase family protein YP_002114486.1 1515270 R 439843 CDS YP_002114487.1 194737249 complement(1517129..1518271) 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane protein N 1518271 439843001666 SeSA_A1572 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein N YP_002114487.1 1517129 R 439843 CDS YP_002114488.1 194736480 complement(1518536..1518664) 1 NC_011094.1 hypothetical protein 1518664 439843001668 SeSA_A1574 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114488.1 1518536 R 439843 CDS YP_002114489.1 194735380 complement(1518750..1519481) 1 NC_011094.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1519481 439843001669 SeSA_A1575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator RstA YP_002114489.1 1518750 R 439843 CDS YP_002114490.1 194738019 1519608..1519943 1 NC_011094.1 identified by match to protein family HMM PF06942; GlpM family protein 1519943 439843001670 SeSA_A1576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GlpM family protein YP_002114490.1 1519608 D 439843 CDS YP_002114491.1 194734288 complement(1520005..1521387) 1 NC_011094.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter 1521387 439843001671 SeSA_A1577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine/ornithine antiporter YP_002114491.1 1520005 R 439843 CDS YP_002114492.1 194734995 complement(1521686..1522630) 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 1522630 439843001672 SeSA_A1578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114492.1 1521686 R 439843 CDS YP_002114493.1 194735539 1523157..1524686 1 NC_011094.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1524686 pntA 439843001673 pntA Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD(P) transhydrogenase subunit alpha YP_002114493.1 1523157 D 439843 CDS YP_002114494.1 194735183 1524697..1526085 1 NC_011094.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1526085 pntB 439843001674 pntB Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridine nucleotide transhydrogenase YP_002114494.1 1524697 D 439843 CDS YP_002114495.1 194735679 complement(1526260..1527294) 1 NC_011094.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transporter 1527294 tqsA 439843001675 tqsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002114495.1 1526260 R 439843 CDS YP_002114496.1 194736432 1527463..1527600 1 NC_011094.1 hypothetical protein 1527600 439843001676 SeSA_A1582 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114496.1 1527463 D 439843 CDS YP_002114497.1 194737112 1527712..1528074 1 NC_011094.1 'with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtJ 1528074 439843001677 SeSA_A1583 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system protein MdtJ YP_002114497.1 1527712 D 439843 CDS YP_002114498.1 194736947 1528061..1528390 1 NC_011094.1 'with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS'; multidrug efflux system protein MdtI 1528390 439843001678 SeSA_A1584 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system protein MdtI YP_002114498.1 1528061 D 439843 CDS YP_002114499.1 194737280 complement(1528430..1529251) 1 NC_011094.1 identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap 1529251 439843001679 SeSA_A1585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase S1 and S6 chymotrypsin/Hap YP_002114499.1 1528430 R 439843 CDS YP_002114500.1 194734190 complement(1529351..1529470) 1 NC_011094.1 identified by glimmer; hypothetical protein 1529470 439843001680 SeSA_A1586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114500.1 1529351 R 439843 CDS YP_002114501.1 194737492 complement(1529520..1529768) 1 NC_011094.1 required for growth and survival under moderately acid conditions; acid shock protein 1529768 439843001681 SeSA_A1587 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acid shock protein YP_002114501.1 1529520 R 439843 CDS YP_002114502.1 194738069 complement(1530163..1531416) 1 NC_011094.1 identified by match to protein family HMM PF07690; inner membrane transport protein YnfM 1531416 439843001682 SeSA_A1588 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YnfM YP_002114502.1 1530163 R 439843 CDS YP_002114503.1 194736254 1531536..1532435 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1532435 439843001683 SeSA_A1589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002114503.1 1531536 D 439843 CDS YP_002114504.1 194736803 1532563..1533783 1 NC_011094.1 identified by match to protein family HMM PF00480; transcriptional regulator Mic 1533783 mic 439843001684 mic Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator Mic YP_002114504.1 1532563 D 439843 CDS YP_002114505.1 194735939 1533909..1534604 1 NC_011094.1 'DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium'; dithiobiotin synthetase 1534604 bioD2 439843001685 bioD2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dithiobiotin synthetase YP_002114505.1 1533909 D 439843 CDS YP_002114506.1 194735503 complement(1534560..1535849) 1 NC_011094.1 identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB 1535849 439843001686 SeSA_A1592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. voltage-gated ClC-type chloride channel ClcB YP_002114506.1 1534560 R 439843 CDS YP_002114507.1 194734404 complement(1535985..1537133) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein opuBA 1537133 439843001687 SeSA_A1593 Salmonella enterica subsp. enterica serovar Schwarzengrund str. choline transport ATP-binding protein opuBA YP_002114507.1 1535985 R 439843 CDS YP_002114508.1 194737451 complement(1537133..1537780) 1 NC_011094.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein 1537780 439843001688 SeSA_A1594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. binding-protein-dependent transport system inner membrane protein YP_002114508.1 1537133 R 439843 CDS YP_002114509.1 194737639 complement(1537790..1538692) 1 NC_011094.1 identified by match to protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 1538692 439843001689 SeSA_A1595 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine betaine ABC transporter substrate-binding protein YP_002114509.1 1537790 R 439843 CDS YP_002114510.1 194734901 complement(1538721..1539431) 1 NC_011094.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein 1539431 439843001690 SeSA_A1596 Salmonella enterica subsp. enterica serovar Schwarzengrund str. binding-protein-dependent transport system inner membrane protein YP_002114510.1 1538721 R 439843 CDS YP_002114511.1 194735439 complement(1539736..1540350) 1 NC_011094.1 'binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane'; twin-argninine leader-binding protein DmsD 1540350 439843001691 SeSA_A1597 Salmonella enterica subsp. enterica serovar Schwarzengrund str. twin-argninine leader-binding protein DmsD YP_002114511.1 1539736 R 439843 CDS YP_002114512.1 194736210 complement(1540393..1541250) 1 NC_011094.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 1541250 dmsC 439843001692 dmsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. dmso reductase anchor subunit YP_002114512.1 1540393 R 439843 CDS YP_002114513.1 194736681 complement(1541252..1541869) 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, B subunit 1541869 dmsB_2 439843001693 dmsB_2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dimethylsulfoxide reductase, B subunit YP_002114513.1 1541252 R 439843 CDS YP_002114514.1 194737575 complement(1541880..1544315) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1544315 439843001694 SeSA_A1600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase subunit A YP_002114514.1 1541880 R 439843 CDS YP_002114515.1 194738045 complement(1544414..1546852) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 1546852 439843001695 SeSA_A1601 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase subunit A YP_002114515.1 1544414 R 439843 CDS YP_002114516.1 194734287 complement(1547009..1547314) 1 NC_011094.1 identified by match to protein family HMM PF06649; outer membrane protein 1547314 439843001696 SeSA_A1602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002114516.1 1547009 R 439843 CDS YP_002114517.1 194734916 1547421..1548131 1 NC_011094.1 identified by match to protein family HMM PF06788; hypothetical protein 1548131 439843001697 SeSA_A1603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114517.1 1547421 D 439843 CDS YP_002114518.1 194735266 complement(1548172..1548732) 1 NC_011094.1 identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1548732 speG 439843001698 speG Salmonella enterica subsp. enterica serovar Schwarzengrund str. diamine N-acetyltransferase YP_002114518.1 1548172 R 439843 CDS YP_002114519.1 194735934 complement(1548768..1549109) 1 NC_011094.1 identified by match to protein family HMM PF06932; hypothetical protein 1549109 439843001699 SeSA_A1605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114519.1 1548768 R 439843 CDS YP_002114520.1 194735159 1549262..1549588 1 NC_011094.1 identified by match to protein family HMM PF02694; hypothetical protein 1549588 439843001700 SeSA_A1606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114520.1 1549262 D 439843 CDS YP_002114521.1 194735816 1549710..1550924 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1550924 439843001701 SeSA_A1607 Salmonella enterica subsp. enterica serovar Schwarzengrund str. starvation sensing protein RspA YP_002114521.1 1549710 D 439843 CDS YP_002114522.1 194737903 1550935..1551954 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; dehydrogenase 1551954 439843001702 SeSA_A1608 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dehydrogenase YP_002114522.1 1550935 D 439843 CDS YP_002114523.1 194736310 1552047..1553387 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1553387 439843001703 SeSA_A1609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane metabolite transport protein YdfJ YP_002114523.1 1552047 D 439843 CDS YP_002114525.1 194737678 1553531..1554997 1 NC_011094.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1554997 439843001704 SeSA_A1610 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-mannonate oxidoreductase YP_002114525.1 1553531 D 439843 CDS YP_002114526.1 194735370 complement(1555064..1555267) 1 NC_011094.1 identified by match to protein family HMM TIGR03318; selenium-binding protein YdfZ 1555267 439843001705 SeSA_A1612 Salmonella enterica subsp. enterica serovar Schwarzengrund str. selenium-binding protein YdfZ YP_002114526.1 1555064 R 439843 CDS YP_002114527.1 194734153 complement(1555448..1556134) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator, GntR family protein 1556134 439843001706 SeSA_A1613 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, GntR family protein YP_002114527.1 1555448 R 439843 CDS YP_002114528.1 194736879 complement(1556264..1557010) 1 NC_011094.1 'NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine'; 3-hydroxy acid dehydrogenase 1557010 439843001707 SeSA_A1614 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-hydroxy acid dehydrogenase YP_002114528.1 1556264 R 439843 CDS YP_002114529.1 194735134 1557149..1559191 1 NC_011094.1 identified by match to protein family HMM PF01432; dipeptidyl carboxypeptidase II 1559191 439843001708 SeSA_A1615 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptidyl carboxypeptidase II YP_002114529.1 1557149 D 439843 CDS YP_002114530.1 194737855 1559536..1559718 1 NC_011094.1 hypothetical protein 1559718 439843001709 SeSA_A1616 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114530.1 1559536 D 439843 CDS YP_002114531.1 194738329 complement(1559838..1560365) 1 NC_011094.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 1560365 439843001710 SeSA_A1617 Salmonella enterica subsp. enterica serovar Schwarzengrund str. competence damage-inducible protein A YP_002114531.1 1559838 R 439843 CDS YP_002114532.1 194736215 1560792..1561184 1 NC_011094.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1561184 439843001711 SeSA_A1618 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114532.1 1560792 D 439843 CDS YP_002114533.1 194738100 1561244..1561387 1 NC_011094.1 identified by glimmer; hypothetical protein 1561387 439843001712 SeSA_A1619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114533.1 1561244 D 439843 CDS YP_002114534.1 194737501 complement(1561533..1561655) 1 NC_011094.1 hypothetical protein 1561655 439843001713 SeSA_A1620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114534.1 1561533 R 439843 CDS YP_002114535.1 194734835 complement(1561875..1563062) 1 NC_011094.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS-type transporter YdeE 1563062 439843001714 SeSA_A1621 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MFS-type transporter YdeE YP_002114535.1 1561875 R 439843 CDS YP_002114536.1 194734417 1563290..1564192 1 NC_011094.1 identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1564192 439843001715 SeSA_A1622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-acetylserine/cysteine export protein YP_002114536.1 1563290 D 439843 CDS YP_002114537.1 194736099 complement(1564311..1564526) 1 NC_011094.1 hypothetical protein 1564526 439843001716 SeSA_A1623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114537.1 1564311 R 439843 CDS YP_002114538.1 194736798 complement(1564555..1564938) 1 NC_011094.1 'transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF'; DNA-binding transcriptional activator MarA 1564938 439843001717 SeSA_A1624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator MarA YP_002114538.1 1564555 R 439843 CDS YP_002114539.1 194736236 complement(1564958..1565392) 1 NC_011094.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1565392 marR 439843001718 marR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor MarR YP_002114539.1 1564958 R 439843 CDS YP_002114540.1 194734616 1565651..1566316 1 NC_011094.1 'protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function'; multiple drug resistance protein MarC 1566316 439843001719 SeSA_A1626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multiple drug resistance protein MarC YP_002114540.1 1565651 D 439843 CDS YP_002114541.1 194734140 complement(1566363..1567553) 1 NC_011094.1 identified by match to protein family HMM PF07690; sugar efflux transporter 1567553 439843001720 SeSA_A1627 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar efflux transporter YP_002114541.1 1566363 R 439843 CDS YP_002114542.1 194738004 complement(1567669..1568541) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain 1568541 439843001721 SeSA_A1628 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain YP_002114542.1 1567669 R 439843 CDS YP_002114543.1 194737448 1568644..1570032 1 NC_011094.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1570032 439843001722 SeSA_A1629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate semialdehyde dehydrogenase YP_002114543.1 1568644 D 439843 CDS YP_002114544.1 194736801 1570105..1571031 1 NC_011094.1 catalyzes the formation of glutamate from glutamine; glutaminase 1571031 439843001723 SeSA_A1630 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaminase YP_002114544.1 1570105 D 439843 CDS YP_002114545.1 194736726 1571031..1571390 1 NC_011094.1 hypothetical protein 1571390 439843001724 SeSA_A1631 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114545.1 1571031 D 439843 CDS YP_008119769.1 513549386 1571613..1572560 1 NC_011094.1 hypothetical protein 1572560 439843001725 SeSA_A1632 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119769.1 1571613 D 439843 CDS YP_002114546.1 194735448 complement(1572616..1573143) 1 NC_011094.1 outer membrane protein 1573143 439843001726 SeSA_A1633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002114546.1 1572616 R 439843 CDS YP_002114547.1 194734756 1573874..1574992 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane protein N 1574992 439843001727 SeSA_A1634 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein N YP_002114547.1 1573874 D 439843 CDS YP_002114548.1 194734673 complement(1575133..1575474) 1 NC_011094.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 1575474 hypA 439843001728 hypA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase nickel incorporation protein HypA YP_002114548.1 1575133 R 439843 CDS YP_002114549.1 194737097 complement(1575487..1576374) 1 NC_011094.1 dehydrogenase protein 1576374 439843001729 SeSA_A1636 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dehydrogenase protein YP_002114549.1 1575487 R 439843 CDS YP_002114550.1 194736482 complement(1576362..1577423) 1 NC_011094.1 identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 1577423 439843001730 SeSA_A1637 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase-1 operon protein HyaF2 YP_002114550.1 1576362 R 439843 CDS YP_002114551.1 194735667 complement(1577441..1577851) 1 NC_011094.1 identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 1577851 439843001731 SeSA_A1638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase-1 operon protein HyaE2 YP_002114551.1 1577441 R 439843 CDS YP_002114552.1 194735217 complement(1577848..1578147) 1 NC_011094.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1578147 hypC 439843001732 hypC Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase assembly chaperone HypC/HupF YP_002114552.1 1577848 R 439843 CDS YP_002114553.1 194734946 complement(1578147..1578755) 1 NC_011094.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein 1578755 hybD 439843001733 hybD Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase expression/formation protein YP_002114553.1 1578147 R 439843 CDS YP_002114554.1 194734434 complement(1578761..1579435) 1 NC_011094.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit 1579435 cybH 439843001734 cybH Salmonella enterica subsp. enterica serovar Schwarzengrund str. Ni/Fe-hydrogenase, B-type cytochrome subunit YP_002114554.1 1578761 R 439843 CDS YP_002114555.1 194734103 complement(1579455..1581257) 1 NC_011094.1 identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit 1581257 439843001735 SeSA_A1642 Salmonella enterica subsp. enterica serovar Schwarzengrund str. [Ni/Fe] hydrogenase, large subunit YP_002114555.1 1579455 R 439843 CDS YP_002114556.1 194737982 complement(1581260..1582363) 1 NC_011094.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit 1582363 439843001736 SeSA_A1643 Salmonella enterica subsp. enterica serovar Schwarzengrund str. uptake hydrogenase small subunit YP_002114556.1 1581260 R 439843 CDS YP_002114557.1 194737677 1582781..1583872 1 NC_011094.1 identified by match to protein family HMM PF02275; choloylglycine hydrolase 1583872 439843001737 SeSA_A1644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. choloylglycine hydrolase YP_002114557.1 1582781 D 439843 CDS YP_002114558.1 194736884 1584038..1584709 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1584709 439843001738 SeSA_A1645 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002114558.1 1584038 D 439843 CDS YP_002114559.1 194735244 complement(1584768..1585793) 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase 1585793 439843001739 SeSA_A1646 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc-type alcohol dehydrogenase YP_002114559.1 1584768 R 439843 CDS YP_002114560.1 194735475 complement(1585768..1587054) 1 NC_011094.1 identified by match to protein family HMM PF07690; membrane transport protein 1587054 439843001740 SeSA_A1647 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane transport protein YP_002114560.1 1585768 R 439843 CDS YP_002114561.2 449306298 complement(1587231..1588787) 1 NC_011094.1 PqaA protein 1588787 pqaA 439843001741 pqaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. PqaA protein YP_002114561.2 1587231 R 439843 CDS YP_002114562.1 194736011 complement(1588857..1590098) 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 1590098 439843001742 SeSA_A1649 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator superfamily protein YP_002114562.1 1588857 R 439843 CDS YP_002114563.1 194734345 complement(1590088..1591596) 1 NC_011094.1 identified by match to protein family HMM PF01494; hypothetical protein 1591596 439843001743 SeSA_A1650 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114563.1 1590088 R 439843 CDS YP_002114564.1 194734884 1591641..1592129 1 NC_011094.1 identified by match to protein family HMM PF01047; transcriptional regulator, MarR family protein 1592129 439843001744 SeSA_A1651 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, MarR family protein YP_002114564.1 1591641 D 439843 CDS YP_002114565.1 194735002 complement(1592189..1592350) 1 NC_011094.1 identified by glimmer; hypothetical protein 1592350 439843001745 SeSA_A1652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114565.1 1592189 R 439843 CDS YP_002114566.1 194737330 1592322..1593401 1 NC_011094.1 isomerase 1593401 439843001746 SeSA_A1653 Salmonella enterica subsp. enterica serovar Schwarzengrund str. isomerase YP_002114566.1 1592322 D 439843 CDS YP_002114567.1 194738026 complement(1593453..1593779) 1 NC_011094.1 endoribonuclease L-PSP 1593779 439843001747 SeSA_A1654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endoribonuclease L-PSP YP_002114567.1 1593453 R 439843 CDS YP_002114568.1 194736289 complement(1593853..1594137) 1 NC_011094.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 1594137 439843001748 SeSA_A1655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. stability protein StbE YP_002114568.1 1593853 R 439843 CDS YP_002114569.1 194737617 complement(1594127..1594375) 1 NC_011094.1 stability protein StbD 1594375 439843001749 SeSA_A1656 Salmonella enterica subsp. enterica serovar Schwarzengrund str. stability protein StbD YP_002114569.1 1594127 R 439843 CDS YP_002114570.1 194736573 1594675..1595133 1 NC_011094.1 phage membrane protein 1595133 439843001750 SeSA_A1658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage membrane protein YP_002114570.1 1594675 D 439843 CDS YP_002114571.1 194735818 1595127..1595459 1 NC_011094.1 identified by match to protein family HMM PF07377; hypothetical protein 1595459 439843001751 SeSA_A1659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114571.1 1595127 D 439843 CDS YP_002114572.1 194734659 1595623..1596573 1 NC_011094.1 identified by match to protein family HMM PF08357; sefir domain-containing protein 1596573 439843001752 SeSA_A1660 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sefir domain-containing protein YP_002114572.1 1595623 D 439843 CDS YP_002114573.1 194738280 1596997..1597188 1 NC_011094.1 identified by glimmer; hypothetical protein 1597188 439843001754 SeSA_A1662 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114573.1 1596997 D 439843 CDS YP_002114574.1 194737800 complement(1597566..1597736) 1 NC_011094.1 hypothetical protein 1597736 439843001755 SeSA_A1663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114574.1 1597566 R 439843 CDS YP_002114575.1 194736666 1598148..1599056 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1599056 439843001756 SeSA_A1664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002114575.1 1598148 D 439843 CDS YP_002114576.1 194735925 1599230..1600210 1 NC_011094.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1600210 439843001757 SeSA_A1665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-nitropropane dioxygenase YP_002114576.1 1599230 D 439843 CDS YP_002114577.1 194734894 complement(1600377..1600496) 1 NC_011094.1 identified by glimmer; hypothetical protein 1600496 439843001758 SeSA_A1666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114577.1 1600377 R 439843 CDS YP_002114578.1 194734450 1600675..1601682 1 NC_011094.1 identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1601682 439843001759 SeSA_A1667 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator GalR YP_002114578.1 1600675 D 439843 CDS YP_002114579.1 194737574 1601826..1603277 1 NC_011094.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1603277 nhaC 439843001760 nhaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. Na+/H+ antiporter NhaC YP_002114579.1 1601826 D 439843 CDS YP_002114580.1 194736773 1603290..1604492 1 NC_011094.1 identified by match to protein family HMM PF00155; class I and II aminotransferase 1604492 439843001761 SeSA_A1669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. class I and II aminotransferase YP_002114580.1 1603290 D 439843 CDS YP_002114581.1 194735910 complement(1604606..1606666) 1 NC_011094.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching protein GlgX 1606666 glgX 439843001762 glgX Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen debranching protein GlgX YP_002114581.1 1604606 R 439843 CDS YP_002114582.1 194735407 complement(1606723..1609251) 1 NC_011094.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase 1609251 treY 439843001763 treY Salmonella enterica subsp. enterica serovar Schwarzengrund str. malto-oligosyltrehalose synthase YP_002114582.1 1606723 R 439843 CDS YP_002114583.1 194735587 complement(1609248..1611032) 1 NC_011094.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase 1611032 treZ 439843001764 treZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. malto-oligosyltrehalose trehalohydrolase YP_002114583.1 1609248 R 439843 CDS YP_002114584.1 194735028 complement(1611161..1611946) 1 NC_011094.1 identified by match to protein family HMM PF06884; hypothetical protein 1611946 439843001765 SeSA_A1673 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114584.1 1611161 R 439843 CDS YP_002114585.1 194734382 complement(1612089..1612418) 1 NC_011094.1 acid-resistance protein 1612418 hdeB 439843001766 hdeB Salmonella enterica subsp. enterica serovar Schwarzengrund str. acid-resistance protein YP_002114585.1 1612089 R 439843 CDS YP_002114586.1 194738053 1613186..1613821 1 NC_011094.1 hypothetical protein 1613821 439843001768 SeSA_A1677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114586.1 1613186 D 439843 CDS YP_002114587.1 194738186 1613956..1614867 1 NC_011094.1 Acts by forming a pore-like structure upon contact with mammalian cells; hemolysin E 1614867 hlyE 439843001769 hlyE Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin E YP_002114587.1 1613956 D 439843 CDS YP_002114588.1 194737694 complement(1614988..1615419) 1 NC_011094.1 identified by match to protein family HMM PF02566; match to protein family HMM TIGR03562; peroxiredoxin OsmC 1615419 439843001770 SeSA_A1679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peroxiredoxin OsmC YP_002114588.1 1614988 R 439843 CDS YP_002114589.1 194735945 1615931..1616146 1 NC_011094.1 biofilm-dependent modulation protein 1616146 439843001771 SeSA_A1680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. biofilm-dependent modulation protein YP_002114589.1 1615931 D 439843 CDS YP_002114590.1 194735442 complement(1616282..1616416) 1 NC_011094.1 identified by glimmer; hypothetical protein 1616416 439843001772 SeSA_A1681 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114590.1 1616282 R 439843 CDS YP_002114591.1 194734905 1616561..1618258 1 NC_011094.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1618258 439843001773 SeSA_A1682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. malate dehydrogenase YP_002114591.1 1616561 D 439843 CDS YP_002114592.1 194734410 1618540..1619550 1 NC_011094.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1619550 439843001774 SeSA_A1683 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alcohol dehydrogenase YP_002114592.1 1618540 D 439843 CDS YP_002114593.1 194738048 complement(1619641..1620297) 1 NC_011094.1 'nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase'; formate dehydrogenase-N subunit gamma 1620297 439843001775 SeSA_A1684 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase-N subunit gamma YP_002114593.1 1619641 R 439843 CDS YP_002114594.1 194738237 complement(1620290..1621174) 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 1621174 fdnH 439843001776 fdnH Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase, nitrate-inducible, iron-sulfur subunit YP_002114594.1 1620290 R 439843 CDS YP_002114595.1 194737424 1624513..1625394 1 NC_011094.1 identified by match to protein family HMM PF00892; hypothetical protein 1625394 439843001778 SeSA_A1688 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114595.1 1624513 D 439843 CDS YP_002114596.1 194737938 1625920..1627008 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane porin protein LC 1627008 439843001779 SeSA_A1689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane porin protein LC YP_002114596.1 1625920 D 439843 CDS YP_002114597.1 194734451 1627092..1627532 1 NC_011094.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1627532 439843001780 SeSA_A1690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-dependent formaldehyde-activating, GFA YP_002114597.1 1627092 D 439843 CDS YP_002114598.1 194734786 complement(1627557..1629044) 1 NC_011094.1 identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA 1629044 439843001781 SeSA_A1691 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl viologen resistance protein SmvA YP_002114598.1 1627557 R 439843 CDS YP_002114599.1 194735466 1629162..1629740 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 1629740 439843001782 SeSA_A1692 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, TetR family protein YP_002114599.1 1629162 D 439843 CDS YP_002114600.1 194735231 1629942..1631342 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1631342 439843001783 SeSA_A1693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrite extrusion protein 2 YP_002114600.1 1629942 D 439843 CDS YP_002114601.1 194735877 1631434..1635174 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1635174 439843001784 SeSA_A1694 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase subunit alpha YP_002114601.1 1631434 D 439843 CDS YP_002114602.1 194736461 1635171..1636715 1 NC_011094.1 identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1636715 narY 439843001785 narY Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase 2 subunit beta YP_002114602.1 1635171 D 439843 CDS YP_002114603.1 194737060 1636715..1637410 1 NC_011094.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1637410 narW 439843001786 narW Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase molybdenum cofactor assembly chaperone 2 YP_002114603.1 1636715 D 439843 CDS YP_002114604.1 194736544 1637407..1638087 1 NC_011094.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 subunit gamma 1638087 narV 439843001787 narV Salmonella enterica subsp. enterica serovar Schwarzengrund str. respiratory nitrate reductase 2 subunit gamma YP_002114604.1 1637407 D 439843 CDS YP_002114605.1 194738215 1638193..1639086 1 NC_011094.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1639086 439843001788 SeSA_A1698 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114605.1 1638193 D 439843 CDS YP_002114606.1 194737815 complement(1639122..1639967) 1 NC_011094.1 identified by match to protein family HMM PF00797; N-acetyltransferase superfamily protein 1639967 439843001789 SeSA_A1699 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetyltransferase superfamily protein YP_002114606.1 1639122 R 439843 CDS YP_002114607.1 194738314 1640070..1640216 1 NC_011094.1 identified by glimmer; hypothetical protein 1640216 439843001790 SeSA_A1700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114607.1 1640070 D 439843 CDS YP_002114608.1 194737832 complement(1640250..1640882) 1 NC_011094.1 hypothetical protein 1640882 439843001791 SeSA_A1701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114608.1 1640250 R 439843 CDS YP_002114609.1 194734462 1641395..1642888 1 NC_011094.1 identified by match to protein family HMM PF00324; L-asparagine permease 1642888 439843001792 SeSA_A1702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-asparagine permease YP_002114609.1 1641395 D 439843 CDS YP_002114610.1 194734006 complement(1642965..1643153) 1 NC_011094.1 identified by match to protein family HMM PF06004; hypothetical protein 1643153 439843001793 SeSA_A1703 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114610.1 1642965 R 439843 CDS YP_002114611.1 194735817 complement(1643331..1644392) 1 NC_011094.1 hypothetical protein 1644392 439843001794 SeSA_A1704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114611.1 1643331 R 439843 CDS YP_002114612.1 194735947 1644656..1646776 1 NC_011094.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor yncD 1646776 439843001795 SeSA_A1705 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TonB-dependent receptor yncD YP_002114612.1 1644656 D 439843 CDS YP_002114613.1 194736903 complement(1646832..1647497) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator 1647497 439843001796 SeSA_A1706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002114613.1 1646832 R 439843 CDS YP_002114614.1 194737426 complement(1647831..1648868) 1 NC_011094.1 identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase yncb 1648868 439843001797 SeSA_A1707 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADP-dependent oxidoreductase yncb YP_002114614.1 1647831 R 439843 CDS YP_002114615.1 194734599 1649079..1649594 1 NC_011094.1 identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1649594 yncA 439843001798 yncA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphinothricin acetyltransferase YP_002114615.1 1649079 D 439843 CDS YP_002114616.1 194735315 1649594..1650043 1 NC_011094.1 identified by match to protein family HMM PF04657; hypothetical protein 1650043 439843001799 SeSA_A1709 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114616.1 1649594 D 439843 CDS YP_002114617.1 194738390 complement(1650048..1650281) 1 NC_011094.1 hypothetical protein 1650281 439843001800 SeSA_A1710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114617.1 1650048 R 439843 CDS YP_002114618.1 194734022 1650505..1651830 1 NC_011094.1 ssrAB activated gene 1651830 439843001801 SeSA_A1711 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ssrAB activated gene YP_002114618.1 1650505 D 439843 CDS YP_002114619.1 194737013 1651835..1654816 1 NC_011094.1 identified by match to protein family HMM PF07520; virulence protein SrfB 1654816 439843001802 SeSA_A1712 Salmonella enterica subsp. enterica serovar Schwarzengrund str. virulence protein SrfB YP_002114619.1 1651835 D 439843 CDS YP_002114620.1 194737788 1654813..1656957 1 NC_011094.1 virulence effector protein 1656957 439843001803 SeSA_A1713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. virulence effector protein YP_002114620.1 1654813 D 439843 CDS YP_002114621.1 194735293 complement(1657002..1657175) 1 NC_011094.1 hypothetical protein 1657175 439843001804 SeSA_A1714 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114621.1 1657002 R 439843 CDS YP_002114622.1 194735825 complement(1657574..1659019) 1 NC_011094.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1659019 ydcW 439843001805 ydcW Salmonella enterica subsp. enterica serovar Schwarzengrund str. gamma-aminobutyraldehyde dehydrogenase YP_002114622.1 1657574 R 439843 CDS YP_002114623.1 194734457 complement(1659134..1660558) 1 NC_011094.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; aminotransferase, classes I and II superfamily protein 1660558 439843001806 SeSA_A1716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminotransferase, classes I and II superfamily protein YP_002114623.1 1659134 R 439843 CDS YP_002114624.1 194738322 complement(1660694..1661464) 1 NC_011094.1 identified by match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase 1661464 439843001807 SeSA_A1717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine dipeptidase YP_002114624.1 1660694 R 439843 CDS YP_002114625.1 194737802 complement(1661988..1662386) 1 NC_011094.1 hypothetical protein 1662386 439843001808 SeSA_A1718 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114625.1 1661988 R 439843 CDS YP_002114626.1 194734475 1662902..1663852 1 NC_011094.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1663852 sifB 439843001809 sifB Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002114626.1 1662902 D 439843 CDS YP_002114627.1 194733968 1664124..1664354 1 NC_011094.1 hypothetical protein 1664354 439843001810 SeSA_A1720 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114627.1 1664124 D 439843 CDS YP_002114628.1 194735780 complement(1664355..1666319) 1 NC_011094.1 identified by match to protein family HMM PF01136; peptidase, U32 family protein 1666319 439843001811 SeSA_A1721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase, U32 family protein YP_002114628.1 1664355 R 439843 CDS YP_002114629.1 194735253 complement(1666398..1666955) 1 NC_011094.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, XRE family protein 1666955 439843001812 SeSA_A1722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, XRE family protein YP_002114629.1 1666398 R 439843 CDS YP_002114630.1 194736477 1667026..1668204 1 NC_011094.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843; benzoate transporter 1668204 439843001813 SeSA_A1723 Salmonella enterica subsp. enterica serovar Schwarzengrund str. benzoate transporter YP_002114630.1 1667026 D 439843 CDS YP_002114631.1 194738342 complement(1668258..1668926) 1 NC_011094.1 lipoprotein 1668926 439843001814 SeSA_A1724 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002114631.1 1668258 R 439843 CDS YP_002114632.1 194737760 complement(1669082..1669678) 1 NC_011094.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1669678 tehB 439843001815 tehB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tellurite resistance protein TehB YP_002114632.1 1669082 R 439843 CDS YP_002114633.1 194737367 complement(1669665..1670678) 1 NC_011094.1 identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter 1670678 439843001816 SeSA_A1726 Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium-tellurite ethidium and proflavin transporter YP_002114633.1 1669665 R 439843 CDS YP_002114634.1 194736675 1670785..1671765 1 NC_011094.1 hypothetical protein 1671765 439843001817 SeSA_A1727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114634.1 1670785 D 439843 CDS YP_002114635.1 194736788 complement(1671762..1672301) 1 NC_011094.1 identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase 1672301 439843001818 SeSA_A1728 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal-protein-L7/L12-serine acetyltransferase YP_002114635.1 1671762 R 439843 CDS YP_002114636.1 194734384 1672518..1673636 1 NC_011094.1 identified by match to protein family HMM PF05343; sgc region protein SgcX 1673636 439843001819 SeSA_A1729 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sgc region protein SgcX YP_002114636.1 1672518 D 439843 CDS YP_002114637.1 194735076 1673633..1673914 1 NC_011094.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose specific transporter subunit IIB 1673914 439843001820 SeSA_A1730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system lactose/cellobiose specific transporter subunit IIB YP_002114637.1 1673633 D 439843 CDS YP_002114638.1 194734560 1673925..1675238 1 NC_011094.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1675238 439843001821 SeSA_A1731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system transporter subunit IIC YP_002114638.1 1673925 D 439843 CDS YP_002114639.1 194734161 1675252..1676058 1 NC_011094.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1676058 439843001822 SeSA_A1732 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114639.1 1675252 D 439843 CDS YP_002114640.1 194736405 1676190..1676627 1 NC_011094.1 identified by match to protein family HMM PF00359; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 1676627 439843001823 SeSA_A1733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_002114640.1 1676190 D 439843 CDS YP_002114641.1 194738190 1676639..1677271 1 NC_011094.1 identified by match to protein family HMM PF00834; epimerase 1677271 439843001824 SeSA_A1734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. epimerase YP_002114641.1 1676639 D 439843 CDS YP_002114642.1 194735462 1677281..1678078 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1678078 439843001825 SeSA_A1735 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002114642.1 1677281 D 439843 CDS YP_002114643.1 194737542 1678078..1678515 1 NC_011094.1 identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1678515 439843001826 SeSA_A1736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside 6'-N-acetyltransferase Iz YP_002114643.1 1678078 D 439843 CDS YP_002114644.1 194734550 complement(1678562..1679764) 1 NC_011094.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180; L-lactate oxidase 1679764 439843001827 SeSA_A1737 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-lactate oxidase YP_002114644.1 1678562 R 439843 CDS YP_002114645.1 194737479 complement(1679776..1680342) 1 NC_011094.1 identified by match to protein family HMM PF04264; hypothetical protein 1680342 439843001828 SeSA_A1738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114645.1 1679776 R 439843 CDS YP_002114647.1 194734298 complement(1680547..1682166) 1 NC_011094.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1682166 mdoD 439843001829 mdoD Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucan biosynthesis protein D YP_002114647.1 1680547 R 439843 CDS YP_002114648.1 194737168 complement(1682422..1683930) 1 NC_011094.1 identified by match to protein family HMM PF00135; carboxylesterase, type B 1683930 439843001830 SeSA_A1741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carboxylesterase, type B YP_002114648.1 1682422 R 439843 CDS YP_002114649.1 194735420 complement(1683979..1685322) 1 NC_011094.1 identified by match to protein family HMM PF07063; hypothetical protein 1685322 439843001831 SeSA_A1742 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114649.1 1683979 R 439843 CDS YP_002114650.1 194737980 1685615..1686538 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1686538 439843001832 SeSA_A1743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002114650.1 1685615 D 439843 CDS YP_002114651.1 194736223 complement(1686599..1688206) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III 1688206 439843001833 SeSA_A1744 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein III YP_002114651.1 1686599 R 439843 CDS YP_002114652.1 194735215 1688223..1688438 1 NC_011094.1 identified by glimmer; hypothetical protein 1688438 439843001834 SeSA_A1745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114652.1 1688223 D 439843 CDS YP_002114653.1 194734098 complement(1688393..1689511) 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 1689511 439843001835 SeSA_A1746 Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_002114653.1 1688393 R 439843 CDS YP_002114654.1 194737103 complement(1689543..1689818) 1 NC_011094.1 identified by match to protein family HMM PF02583; hypothetical protein 1689818 439843001836 SeSA_A1747 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114654.1 1689543 R 439843 CDS YP_002114655.1 194736519 complement(1689962..1690096) 1 NC_011094.1 identified by glimmer; hypothetical protein 1690096 439843001837 SeSA_A1748 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114655.1 1689962 R 439843 CDS YP_002114656.1 194738387 complement(1690872..1691588) 1 NC_011094.1 hypothetical protein 1691588 439843001838 SeSA_A1749 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114656.1 1690872 R 439843 CDS YP_002114657.1 194738033 1692014..1693240 1 NC_011094.1 secreted effector protein 1693240 439843001839 SeSA_A1750 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002114657.1 1692014 D 439843 CDS YP_002114658.1 194734977 complement(1693361..1693705) 1 NC_011094.1 identified by match to protein family HMM PF06961; cyanate transport 1693705 439843001840 SeSA_A1751 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyanate transport YP_002114658.1 1693361 R 439843 CDS YP_002114659.1 194734479 1694631..1695392 1 NC_011094.1 identified by match to protein family HMM PF00497; periplasmic binding protein 1695392 439843001841 SeSA_A1752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic binding protein YP_002114659.1 1694631 D 439843 CDS YP_002114660.1 194734145 1695399..1696046 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter permease 1696046 439843001842 SeSA_A1753 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002114660.1 1695399 D 439843 CDS YP_002114661.1 194737703 1696071..1696802 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1696802 439843001843 SeSA_A1754 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002114661.1 1696071 D 439843 CDS YP_002114662.1 194735220 1696799..1697479 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter 1697479 439843001844 SeSA_A1755 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid ABC transporter YP_002114662.1 1696799 D 439843 CDS YP_002114663.1 194737488 1697616..1699166 1 NC_011094.1 hypothetical protein 1699166 439843001845 SeSA_A1756 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114663.1 1697616 D 439843 CDS YP_002114664.1 194735144 1699630..1700292 1 NC_011094.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; type 12 methyltransferase 1700292 439843001846 SeSA_A1757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type 12 methyltransferase YP_002114664.1 1699630 D 439843 CDS YP_002114665.1 194735628 complement(1700563..1701093) 1 NC_011094.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1701093 439843001848 SeSA_A1759 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome b561 YP_002114665.1 1700563 R 439843 CDS YP_002114666.1 194734172 complement(1701210..1702010) 1 NC_011094.1 identified by match to protein family HMM PF02698; hypothetical protein 1702010 439843001849 SeSA_A1760 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114666.1 1701210 R 439843 CDS YP_002114667.1 194734661 complement(1702074..1705994) 1 NC_011094.1 'involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain'; ATP-dependent RNA helicase HrpA 1705994 hrpA 439843001850 hrpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase HrpA YP_002114667.1 1702074 R 439843 CDS YP_002114668.1 194734202 1706177..1706782 1 NC_011094.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1706782 439843001851 SeSA_A1762 Salmonella enterica subsp. enterica serovar Schwarzengrund str. azoreductase YP_002114668.1 1706177 D 439843 CDS YP_002114669.1 194738087 complement(1706779..1707228) 1 NC_011094.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1707228 439843001852 SeSA_A1763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-dependent formaldehyde-activating, GFA YP_002114669.1 1706779 R 439843 CDS YP_002114670.1 194737131 complement(1707372..1707695) 1 NC_011094.1 identified by match to protein family HMM PF07027; hypothetical protein 1707695 439843001853 SeSA_A1764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114670.1 1707372 R 439843 CDS YP_002114671.1 194737758 complement(1707703..1707894) 1 NC_011094.1 hypothetical protein 1707894 439843001854 SeSA_A1765 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114671.1 1707703 R 439843 CDS YP_002114672.1 194737626 complement(1707894..1710530) 1 NC_011094.1 hypothetical protein 1710530 439843001855 SeSA_A1766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114672.1 1707894 R 439843 CDS YP_002114673.1 194738254 1710770..1711759 1 NC_011094.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1711759 439843001856 SeSA_A1767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-lactate dehydrogenase YP_002114673.1 1710770 D 439843 CDS YP_002114674.1 194736506 1711870..1712280 1 NC_011094.1 identified by match to protein family HMM PF03724; heat-inducible protein 1712280 439843001857 SeSA_A1768 Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat-inducible protein YP_002114674.1 1711870 D 439843 CDS YP_002114675.1 194736975 complement(1712324..1712590) 1 NC_011094.1 hypothetical protein 1712590 439843001858 SeSA_A1769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114675.1 1712324 R 439843 CDS YP_002114676.1 194735236 1712866..1716390 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1716390 nifJ 439843001859 nifJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_002114676.1 1712866 D 439843 CDS YP_002114677.1 194735747 complement(1716449..1716658) 1 NC_011094.1 identified by glimmer; hypothetical protein 1716658 439843001861 SeSA_A1772 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114677.1 1716449 R 439843 CDS YP_002114678.1 194733971 1716872..1717306 1 NC_011094.1 identified by match to protein family HMM PF00582; universal stress protein F 1717306 439843001862 SeSA_A1773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein F YP_002114678.1 1716872 D 439843 CDS YP_002114679.1 194735546 complement(1717356..1717694) 1 NC_011094.1 identified by match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacE 1717694 439843001863 SeSA_A1774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quaternary ammonium compound-resistance protein QacE YP_002114679.1 1717356 R 439843 CDS YP_002114680.1 194736668 complement(1717969..1719801) 1 NC_011094.1 hypothetical protein 1719801 439843001864 SeSA_A1775 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114680.1 1717969 R 439843 CDS YP_002114682.1 194735405 1720489..1721424 1 NC_011094.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1721424 439843001865 SeSA_A1777 Salmonella enterica subsp. enterica serovar Schwarzengrund str. C32 tRNA thiolase YP_002114682.1 1720489 D 439843 CDS YP_002114683.1 194736572 complement(1721468..1722841) 1 NC_011094.1 'exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA'; ATP-dependent RNA helicase DbpA 1722841 439843001866 SeSA_A1778 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase DbpA YP_002114683.1 1721468 R 439843 CDS YP_002114684.1 194737020 complement(1723328..1724311) 1 NC_011094.1 identified by match to protein family HMM PF01544; zinc transporter 1724311 zntB 439843001868 zntB Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc transporter YP_002114684.1 1723328 R 439843 CDS YP_002114685.1 194736531 complement(1724457..1725551) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 1725551 439843001869 SeSA_A1781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis sensory transducer YP_002114685.1 1724457 R 439843 CDS YP_002114686.1 194738335 complement(1725622..1725783) 1 NC_011094.1 hypothetical protein 1725783 439843001870 SeSA_A1782 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114686.1 1725622 R 439843 CDS YP_002114687.1 194737816 complement(1726022..1726585) 1 NC_011094.1 identified by match to protein family HMM PF01713; Smr protein/MutS2 1726585 439843001871 SeSA_A1783 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Smr protein/MutS2 YP_002114687.1 1726022 R 439843 CDS YP_002114688.1 194734500 1726843..1727358 1 NC_011094.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1727358 439843001872 SeSA_A1784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_002114688.1 1726843 D 439843 CDS YP_002114689.1 194734021 1727554..1728306 1 NC_011094.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1728306 fnr 439843001873 fnr Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate/nitrate reduction transcriptional regulator YP_002114689.1 1727554 D 439843 CDS YP_002114690.1 194736524 1728457..1729404 1 NC_011094.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1729404 uspE 439843001874 uspE Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein UspE YP_002114690.1 1728457 D 439843 CDS YP_002114691.1 194735320 complement(1729459..1729713) 1 NC_011094.1 hypothetical protein 1729713 439843001875 SeSA_A1787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114691.1 1729459 R 439843 CDS YP_002114692.1 194734395 1729952..1730983 1 NC_011094.1 identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI 1730983 439843001876 SeSA_A1788 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MscS family inner membrane protein YnaI YP_002114692.1 1729952 D 439843 CDS YP_002114693.1 194734886 complement(1731069..1731671) 1 NC_011094.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, Cro/CI family protein 1731671 439843001877 SeSA_A1789 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, Cro/CI family protein YP_002114693.1 1731069 R 439843 CDS YP_002114694.1 194737950 1731715..1732401 1 NC_011094.1 identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1732401 439843001878 SeSA_A1790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. B3/4 domain-containing protein YP_002114694.1 1731715 D 439843 CDS YP_002114695.1 194736207 1732429..1732767 1 NC_011094.1 hypothetical protein 1732767 439843001879 SeSA_A1791 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114695.1 1732429 D 439843 CDS YP_002114696.1 194736455 complement(1732872..1733390) 1 NC_011094.1 thiol peroxidase 1733390 439843001880 SeSA_A1792 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol peroxidase YP_002114696.1 1732872 R 439843 CDS YP_002114697.1 194736937 complement(1733525..1734349) 1 NC_011094.1 hypothetical protein 1734349 439843001881 SeSA_A1793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114697.1 1733525 R 439843 CDS YP_002114698.1 194735412 complement(1734376..1736358) 1 NC_011094.1 hypothetical protein 1736358 439843001882 SeSA_A1794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114698.1 1734376 R 439843 CDS YP_002114699.1 194735914 complement(1736433..1737278) 1 NC_011094.1 hypothetical protein 1737278 439843001883 SeSA_A1795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114699.1 1736433 R 439843 CDS YP_002114700.1 194737385 1737576..1738427 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; regulatory protein 1738427 439843001884 SeSA_A1796 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002114700.1 1737576 D 439843 CDS YP_002114701.1 194738109 1738817..1739926 1 NC_011094.1 hypothetical protein 1739926 439843001885 SeSA_A1797 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114701.1 1738817 D 439843 CDS YP_002114702.1 194736205 complement(1740140..1740376) 1 NC_011094.1 identified by match to protein family HMM PF06004; hypothetical protein 1740376 439843001886 SeSA_A1798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114702.1 1740140 R 439843 CDS YP_002114703.1 194737106 complement(1740504..1741094) 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator, TetR family protein 1741094 439843001887 SeSA_A1799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, TetR family protein YP_002114703.1 1740504 R 439843 CDS YP_002114704.1 194734666 1741172..1741885 1 NC_011094.1 identified by match to protein family HMM PF00106; oxidoreductase 1741885 439843001888 SeSA_A1800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YP_002114704.1 1741172 D 439843 CDS YP_002114705.1 194735923 complement(1741976..1742845) 1 NC_011094.1 identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A 1742845 439843001889 SeSA_A1801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,5-diketo-D-gluconate reductase A YP_002114705.1 1741976 R 439843 CDS YP_002114706.1 194737898 complement(1743121..1744026) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR:LysR, substrate-binding 1744026 439843001890 SeSA_A1802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein LysR:LysR, substrate-binding YP_002114706.1 1743121 R 439843 CDS YP_002114707.1 194734031 1744146..1745075 1 NC_011094.1 identified by match to protein family HMM PF05368; isoflavone reductase 1745075 439843001891 SeSA_A1803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. isoflavone reductase YP_002114707.1 1744146 D 439843 CDS YP_002114708.1 194737751 complement(1745172..1746785) 1 NC_011094.1 identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein 1746785 439843001892 SeSA_A1804 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic murein peptide-binding protein YP_002114708.1 1745172 R 439843 CDS YP_002114709.1 194736489 1746975..1747703 1 NC_011094.1 identified by match to protein family HMM PF00246; murein peptide amidase A 1747703 439843001893 SeSA_A1805 Salmonella enterica subsp. enterica serovar Schwarzengrund str. murein peptide amidase A YP_002114709.1 1746975 D 439843 CDS YP_002114710.1 194738379 complement(1747678..1748643) 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein 1748643 439843001894 SeSA_A1806 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein YP_002114710.1 1747678 R 439843 CDS YP_002114711.1 194737113 1748759..1749265 1 NC_011094.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1749265 tpx 439843001895 tpx Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol peroxidase YP_002114711.1 1748759 D 439843 CDS YP_002114712.1 194734622 complement(1749355..1750896) 1 NC_011094.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1750896 439843001896 SeSA_A1808 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator TyrR YP_002114712.1 1749355 R 439843 CDS YP_002114713.1 194734584 complement(1751044..1752105) 1 NC_011094.1 identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein 1752105 439843001897 SeSA_A1809 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114713.1 1751044 R 439843 CDS YP_002114714.1 194733955 complement(1752102..1753499) 1 NC_011094.1 identified by match to protein family HMM PF04317; hypothetical protein 1753499 439843001898 SeSA_A1810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114714.1 1752102 R 439843 CDS YP_002114715.1 194734356 complement(1753648..1753962) 1 NC_011094.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1753962 439843001899 SeSA_A1811 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiosulfate:cyanide sulfurtransferase YP_002114715.1 1753648 R 439843 CDS YP_002114716.1 194735436 complement(1754038..1754256) 1 NC_011094.1 identified by match to protein family HMM PF09584; match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein 1754256 pspD 439843001900 pspD Salmonella enterica subsp. enterica serovar Schwarzengrund str. peripheral inner membrane phage-shock protein YP_002114716.1 1754038 R 439843 CDS YP_002114717.1 194737022 complement(1754279..1754638) 1 NC_011094.1 'with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock'; DNA-binding transcriptional activator PspC 1754638 pspC 439843001901 pspC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator PspC YP_002114717.1 1754279 R 439843 CDS YP_002114718.1 194736422 complement(1754638..1754862) 1 NC_011094.1 'acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding'; phage shock protein B 1754862 pspB 439843001902 pspB Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage shock protein B YP_002114718.1 1754638 R 439843 CDS YP_002114719.1 194738008 complement(1754922..1755590) 1 NC_011094.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1755590 pspA 439843001903 pspA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage shock protein PspA YP_002114719.1 1754922 R 439843 CDS YP_002114720.1 194734642 1755746..1756741 1 NC_011094.1 'transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor'; phage shock protein operon transcriptional activator 1756741 pspF 439843001904 pspF Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage shock protein operon transcriptional activator YP_002114720.1 1755746 D 439843 CDS YP_002114721.1 194734041 1756853..1758502 1 NC_011094.1 identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1758502 439843001905 SeSA_A1817 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide transport periplasmic protein SapA YP_002114721.1 1756853 D 439843 CDS YP_002114722.1 194735684 1758499..1759464 1 NC_011094.1 identified by match to protein family HMM PF00528; peptide transport system permease SapB 1759464 439843001906 SeSA_A1818 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide transport system permease SapB YP_002114722.1 1758499 D 439843 CDS YP_002114723.1 194737179 complement(1759496..1759633) 1 NC_011094.1 hypothetical protein 1759633 439843001907 SeSA_A1819 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114723.1 1759496 R 439843 CDS YP_002114724.1 194735977 1763663..1764553 1 NC_011094.1 identified by match to protein family HMM PF00528; peptide transport system permease SapC 1764553 439843001909 SeSA_A1823 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide transport system permease SapC YP_002114724.1 1763663 D 439843 CDS YP_002114725.1 194735415 1764553..1765545 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide transport system ATP-binding protein SapD 1765545 439843001910 SeSA_A1824 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide transport system ATP-binding protein SapD YP_002114725.1 1764553 D 439843 CDS YP_002114726.1 194735207 1765547..1766353 1 NC_011094.1 identified by match to protein family HMM PF00005; peptide transport system ATP-binding protein SapF 1766353 439843001911 SeSA_A1825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide transport system ATP-binding protein SapF YP_002114726.1 1765547 D 439843 CDS YP_002114727.1 194736942 complement(1766369..1767076) 1 NC_011094.1 hypothetical protein 1767076 439843001912 SeSA_A1826 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114727.1 1766369 R 439843 CDS YP_002114728.2 449306299 complement(1767542..1768915) 1 NC_011094.1 hypothetical protein 1768915 439843001913 SeSA_A1827 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114728.2 1767542 R 439843 CDS YP_002114729.1 194737974 1769522..1770310 1 NC_011094.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1770310 fabI 439843001914 fabI Salmonella enterica subsp. enterica serovar Schwarzengrund str. enoyl-ACP reductase YP_002114729.1 1769522 D 439843 CDS YP_008119770.1 513549387 1770510..1771643 1 NC_011094.1 hypothetical protein 1771643 439843001915 SeSA_A1829 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119770.1 1770510 D 439843 CDS YP_002114730.1 194737209 1771732..1773666 1 NC_011094.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1773666 rnb 439843001916 rnb Salmonella enterica subsp. enterica serovar Schwarzengrund str. exoribonuclease II YP_002114730.1 1771732 D 439843 CDS YP_002114731.1 194734043 1773928..1775910 1 NC_011094.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1775910 439843001917 SeSA_A1831 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNase II stability modulator YP_002114731.1 1773928 D 439843 CDS YP_002114732.1 194738074 1776032..1776211 1 NC_011094.1 hypothetical protein 1776211 439843001918 SeSA_A1832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114732.1 1776032 D 439843 CDS YP_002114733.1 194735862 1776298..1777050 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; transcriptional regulator, DeoR family protein 1777050 439843001919 SeSA_A1833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, DeoR family protein YP_002114733.1 1776298 D 439843 CDS YP_002114734.1 194735194 1777309..1777527 1 NC_011094.1 lipoprotein 1777527 439843001920 SeSA_A1834 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002114734.1 1777309 D 439843 CDS YP_002114735.1 194736552 complement(1777647..1777973) 1 NC_011094.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1777973 439843001921 SeSA_A1835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. translation initiation factor Sui1 YP_002114735.1 1777647 R 439843 CDS YP_002114736.1 194735972 complement(1777973..1778770) 1 NC_011094.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1778770 pyrF 439843001922 pyrF Salmonella enterica subsp. enterica serovar Schwarzengrund str. orotidine 5'-phosphate decarboxylase YP_002114736.1 1777973 R 439843 CDS YP_002114737.1 194737248 complement(1778901..1780070) 1 NC_011094.1 identified by match to protein family HMM PF07719; hypothetical protein 1780070 439843001923 SeSA_A1837 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114737.1 1778901 R 439843 CDS YP_002114738.1 194736231 complement(1780077..1780385) 1 NC_011094.1 identified by match to protein family HMM PF06305; hypothetical protein 1780385 439843001924 SeSA_A1838 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114738.1 1780077 R 439843 CDS YP_002114739.1 194738364 complement(1780535..1781299) 1 NC_011094.1 identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B 1781299 439843001925 SeSA_A1839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatidylglycerophosphatase B YP_002114739.1 1780535 R 439843 CDS YP_002114740.2 449306300 1781495..1782085 1 NC_011094.1 'catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate'; GTP cyclohydrolase II 1782085 ribA 439843001926 ribA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP cyclohydrolase II YP_002114740.2 1781495 D 439843 CDS YP_002114741.1 194737069 complement(1782141..1784816) 1 NC_011094.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1784816 acnA 439843001927 acnA Salmonella enterica subsp. enterica serovar Schwarzengrund str. aconitate hydratase YP_002114741.1 1782141 R 439843 CDS YP_002114742.1 194736468 complement(1785201..1785371) 1 NC_011094.1 hypothetical protein 1785371 439843001928 SeSA_A1842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114742.1 1785201 R 439843 CDS YP_002114743.1 194738359 complement(1785372..1785500) 1 NC_011094.1 hypothetical protein 1785500 439843001929 SeSA_A1843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114743.1 1785372 R 439843 CDS YP_002114744.1 194737763 complement(1785793..1786767) 1 NC_011094.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1786767 cysB 439843001930 cysB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator CysB YP_002114744.1 1785793 R 439843 CDS YP_002114745.1 194734540 1786723..1786887 1 NC_011094.1 identified by glimmer; hypothetical protein 1786887 439843001931 SeSA_A1845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114745.1 1786723 D 439843 CDS YP_002114746.1 194733931 complement(1787171..1789768) 1 NC_011094.1 'catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity'; DNA topoisomerase I 1789768 topA 439843001932 topA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA topoisomerase I YP_002114746.1 1787171 R 439843 CDS YP_002114747.1 194735847 1790171..1790422 1 NC_011094.1 hypothetical protein 1790422 439843001933 SeSA_A1847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114747.1 1790171 D 439843 CDS YP_002114748.1 194735219 complement(1790464..1791510) 1 NC_011094.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1791510 439843001934 SeSA_A1848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic protease YP_002114748.1 1790464 R 439843 CDS YP_002114749.1 194738279 1791748..1792509 1 NC_011094.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1792509 439843001935 SeSA_A1849 Salmonella enterica subsp. enterica serovar Schwarzengrund str. short chain dehydrogenase YP_002114749.1 1791748 D 439843 CDS YP_002114750.1 194736591 1792506..1793096 1 NC_011094.1 'catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide'; cob(I)yrinic acid a,c-diamide adenosyltransferase 1793096 cobO 439843001936 cobO Salmonella enterica subsp. enterica serovar Schwarzengrund str. cob(I)yrinic acid a,c-diamide adenosyltransferase YP_002114750.1 1792506 D 439843 CDS YP_002114751.1 194733904 complement(1793183..1794058) 1 NC_011094.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1794058 rluB 439843001937 rluB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA pseudouridylate synthase B YP_002114751.1 1793183 R 439843 CDS YP_002114752.1 194734510 complement(1794159..1794779) 1 NC_011094.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein 1794779 439843001938 SeSA_A1852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114752.1 1794159 R 439843 CDS YP_002114753.1 194735330 complement(1794787..1795635) 1 NC_011094.1 identified by match to protein family HMM PF02811; phosphoesterase 1795635 439843001939 SeSA_A1853 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoesterase YP_002114753.1 1794787 R 439843 CDS YP_002114754.1 194735813 1795929..1797491 1 NC_011094.1 'with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine'; anthranilate synthase component I 1797491 trpE 439843001940 trpE Salmonella enterica subsp. enterica serovar Schwarzengrund str. anthranilate synthase component I YP_002114754.1 1795929 D 439843 CDS YP_002114755.1 194736540 1797491..1799086 1 NC_011094.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1799086 trpD 439843001941 trpD Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_002114755.1 1797491 D 439843 CDS YP_002114756.1 194737024 1799090..1800448 1 NC_011094.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1800448 439843001942 SeSA_A1857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002114756.1 1799090 D 439843 CDS YP_002114757.1 194736647 1800458..1801651 1 NC_011094.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1801651 trpB 439843001943 trpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophan synthase subunit beta YP_002114757.1 1800458 D 439843 CDS YP_002114758.1 194737017 1801651..1802457 1 NC_011094.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1802457 trpA 439843001944 trpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophan synthase subunit alpha YP_002114758.1 1801651 D 439843 CDS YP_002114759.1 194735791 1802937..1803119 1 NC_011094.1 hypothetical protein 1803119 439843001945 SeSA_A1860 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114759.1 1802937 D 439843 CDS YP_002114760.1 194735089 1803209..1803712 1 NC_011094.1 identified by match to protein family HMM PF05974; hypothetical protein 1803712 439843001946 SeSA_A1861 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114760.1 1803209 D 439843 CDS YP_002114761.1 194733919 1803786..1804292 1 NC_011094.1 identified by match to protein family HMM PF05974; hypothetical protein 1804292 439843001947 SeSA_A1862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114761.1 1803786 D 439843 CDS YP_002114762.1 194738055 1804312..1805190 1 NC_011094.1 identified by match to protein family HMM PF05067; catalase 1805190 439843001948 SeSA_A1863 Salmonella enterica subsp. enterica serovar Schwarzengrund str. catalase YP_002114762.1 1804312 D 439843 CDS YP_002114763.1 194735496 complement(1805272..1805910) 1 NC_011094.1 receptor for colicin S4; outer membrane protein W 1805910 439843001949 SeSA_A1864 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein W YP_002114763.1 1805272 R 439843 CDS YP_002114764.1 194734543 complement(1806064..1806186) 1 NC_011094.1 identified by glimmer; hypothetical protein 1806186 439843001950 SeSA_A1865 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114764.1 1806064 R 439843 CDS YP_002114765.1 194737269 1806247..1806651 1 NC_011094.1 identified by match to protein family HMM PF03692; ferredoxin 1806651 439843001951 SeSA_A1866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin YP_002114765.1 1806247 D 439843 CDS YP_002114766.1 194736608 1806677..1807420 1 NC_011094.1 identified by match to protein family HMM PF06790; hypothetical protein 1807420 439843001952 SeSA_A1867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114766.1 1806677 D 439843 CDS YP_002114767.1 194738214 1807477..1808016 1 NC_011094.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1808016 ispZ 439843001953 ispZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. intracellular septation protein A YP_002114767.1 1807477 D 439843 CDS YP_002114768.1 194737579 1808186..1808578 1 NC_011094.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1808578 439843001954 SeSA_A1869 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA thioester hydrolase YP_002114768.1 1808186 D 439843 CDS YP_002114769.1 194737918 complement(1808648..1809376) 1 NC_011094.1 'membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins'; transporter 1809376 439843001955 SeSA_A1870 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002114769.1 1808648 R 439843 CDS YP_002114770.1 194733929 1809599..1809895 1 NC_011094.1 'unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity'; hypothetical protein 1809895 439843001956 SeSA_A1871 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114770.1 1809599 D 439843 CDS YP_002114771.1 194734528 complement(1809939..1810076) 1 NC_011094.1 hypothetical protein 1810076 439843001957 SeSA_A1872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114771.1 1809939 R 439843 CDS YP_002114772.1 194735331 1810255..1811715 1 NC_011094.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1811715 cls 439843001958 cls Salmonella enterica subsp. enterica serovar Schwarzengrund str. cardiolipin synthetase YP_002114772.1 1810255 D 439843 CDS YP_008119771.1 513549388 1811749..1812078 1 NC_011094.1 dsDNA-mimic protein 1812078 439843001959 SeSA_A1874 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dsDNA-mimic protein YP_008119771.1 1811749 D 439843 CDS YP_002114773.1 194737132 complement(1812126..1812962) 1 NC_011094.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein 1812962 439843001960 SeSA_A1875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Ion transport protein YP_002114773.1 1812126 R 439843 CDS YP_002114774.1 194737778 complement(1813010..1814014) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF 1814014 oppF 439843001961 oppF Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligopeptide ABC transporter ATP-binding protein OppF YP_002114774.1 1813010 R 439843 CDS YP_002114775.1 194738295 complement(1814011..1815018) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 1815018 oppD 439843001962 oppD Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligopeptide ABC transporter ATP-binding protein YP_002114775.1 1814011 R 439843 CDS YP_002114776.1 194736526 complement(1815030..1815938) 1 NC_011094.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC 1815938 oppC 439843001963 oppC Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligopeptide ABC transporter permease OppC YP_002114776.1 1815030 R 439843 CDS YP_002114777.1 194737110 complement(1815953..1816873) 1 NC_011094.1 identified by match to protein family HMM PF00528; oligopeptide transporter permease 1816873 oppB 439843001964 oppB Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligopeptide transporter permease YP_002114777.1 1815953 R 439843 CDS YP_002114778.1 194738028 complement(1816996..1818627) 1 NC_011094.1 identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein 1818627 439843001965 SeSA_A1880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic oligopeptide-binding protein YP_002114778.1 1816996 R 439843 CDS YP_002114779.1 194738267 complement(1819392..1820039) 1 NC_011094.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 1820039 439843001966 SeSA_A1881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114779.1 1819392 R 439843 CDS YP_002114780.1 194737781 1820516..1823194 1 NC_011094.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1823194 adhE 439843001967 adhE Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002114780.1 1820516 D 439843 CDS YP_002114781.1 194735022 complement(1823389..1824006) 1 NC_011094.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1824006 tdk 439843001968 tdk Salmonella enterica subsp. enterica serovar Schwarzengrund str. thymidine kinase YP_002114781.1 1823389 R 439843 CDS YP_002114782.1 194734348 1824669..1825082 1 NC_011094.1 identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1825082 439843001969 SeSA_A1884 Salmonella enterica subsp. enterica serovar Schwarzengrund str. global DNA-binding transcriptional dual regulator H-NS YP_002114782.1 1824669 D 439843 CDS YP_002114783.1 194735711 complement(1825214..1826122) 1 NC_011094.1 'together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase 1826122 galU 439843001970 galU Salmonella enterica subsp. enterica serovar Schwarzengrund str. UTP-glucose-1-phosphate uridylyltransferase YP_002114783.1 1825214 R 439843 CDS YP_002114784.1 194735294 complement(1826325..1827338) 1 NC_011094.1 identified by match to protein family HMM PF00072; response regulator of RpoS 1827338 439843001971 SeSA_A1886 Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator of RpoS YP_002114784.1 1826325 R 439843 CDS YP_002114785.1 194736874 complement(1827429..1828334) 1 NC_011094.1 identified by match to protein family HMM PF01734; hypothetical protein 1828334 439843001972 SeSA_A1887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114785.1 1827429 R 439843 CDS YP_002114786.1 194737073 1828397..1828903 1 NC_011094.1 identified by match to protein family HMM PF02810; hypothetical protein 1828903 439843001973 SeSA_A1888 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114786.1 1828397 D 439843 CDS YP_002114787.1 194736486 1828954..1829796 1 NC_011094.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1829796 purU 439843001974 purU Salmonella enterica subsp. enterica serovar Schwarzengrund str. formyltetrahydrofolate deformylase YP_002114787.1 1828954 D 439843 CDS YP_002114788.1 194734699 1830802..1831356 1 NC_011094.1 hypothetical protein 1831356 439843001980 SeSA_A1895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114788.1 1830802 D 439843 CDS YP_002114789.1 194734046 1831377..1831502 1 NC_011094.1 identified by glimmer; hypothetical protein 1831502 439843001981 SeSA_A1896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114789.1 1831377 D 439843 CDS YP_002114790.1 194735717 complement(1831524..1832201) 1 NC_011094.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma 1832201 narI 439843001982 narI Salmonella enterica subsp. enterica serovar Schwarzengrund str. respiratory nitrate reductase subunit gamma YP_002114790.1 1831524 R 439843 CDS YP_002114791.1 194735178 complement(1832201..1832911) 1 NC_011094.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 1832911 narJ 439843001983 narJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase molybdenum cofactor assembly chaperone 1 YP_002114791.1 1832201 R 439843 CDS YP_002114792.1 194737276 complement(1832908..1834443) 1 NC_011094.1 identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta 1834443 narH 439843001984 narH Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase 1 subunit beta YP_002114792.1 1832908 R 439843 CDS YP_002114793.1 194736654 complement(1834440..1838183) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha 1838183 narG 439843001985 narG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase 1 subunit alpha YP_002114793.1 1834440 R 439843 CDS YP_002114794.1 194738256 complement(1838571..1839968) 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 1839968 439843001986 SeSA_A1901 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrite extrusion protein 1 YP_002114794.1 1838571 R 439843 CDS YP_002114795.1 194737659 complement(1840066..1840308) 1 NC_011094.1 hypothetical protein 1840308 439843001987 SeSA_A1903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114795.1 1840066 R 439843 CDS YP_002114796.1 194737257 1840307..1842103 1 NC_011094.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1842103 439843001988 SeSA_A1902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate/nitrite sensor protein NarX YP_002114796.1 1840307 D 439843 CDS YP_002114797.1 194736641 1842096..1842746 1 NC_011094.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1842746 439843001989 SeSA_A1904 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator NarL YP_002114797.1 1842096 D 439843 CDS YP_002114798.1 194735922 complement(1842747..1844171) 1 NC_011094.1 hypothetical protein 1844171 439843001990 SeSA_A1905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114798.1 1842747 R 439843 CDS YP_002114799.1 194735851 1844348..1844701 1 NC_011094.1 identified by match to protein family HMM PF02635; hypothetical protein 1844701 439843001991 SeSA_A1906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114799.1 1844348 D 439843 CDS YP_002114800.1 194737233 complement(1844781..1845011) 1 NC_011094.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1845011 chaB 439843001992 chaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cation transport regulator YP_002114800.1 1844781 R 439843 CDS YP_002114801.1 194737722 1845278..1846378 1 NC_011094.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1846378 439843001993 SeSA_A1908 Salmonella enterica subsp. enterica serovar Schwarzengrund str. calcium/sodium:proton antiporter YP_002114801.1 1845278 D 439843 CDS YP_002114802.1 194737901 complement(1846432..1847286) 1 NC_011094.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1847286 kdsA 439843001994 kdsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-dehydro-3-deoxyphosphooctonate aldolase YP_002114802.1 1846432 R 439843 CDS YP_002114803.1 194734431 complement(1847324..1848133) 1 NC_011094.1 transcriptional regulator 1848133 sirB1 439843001995 sirB1 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002114803.1 1847324 R 439843 CDS YP_002114804.1 194734672 complement(1848137..1848514) 1 NC_011094.1 identified by match to protein family HMM PF04247; transcriptional regulator 1848514 439843001996 SeSA_A1911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002114804.1 1848137 R 439843 CDS YP_002114805.1 194735200 complement(1848523..1849356) 1 NC_011094.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1849356 hemK 439843001997 hemK Salmonella enterica subsp. enterica serovar Schwarzengrund str. N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002114805.1 1848523 R 439843 CDS YP_002114806.1 194736546 complement(1849356..1850438) 1 NC_011094.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1850438 prfA 439843001998 prfA Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide chain release factor 1 YP_002114806.1 1849356 R 439843 CDS YP_002114807.1 194737032 complement(1850479..1851735) 1 NC_011094.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1851735 hemA 439843001999 hemA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamyl-tRNA reductase YP_002114807.1 1850479 R 439843 CDS YP_002114808.1 194736262 complement(1851903..1852031) 1 NC_011094.1 identified by glimmer; hypothetical protein 1852031 439843002000 SeSA_A1915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114808.1 1851903 R 439843 CDS YP_002114809.1 194736828 1852049..1852672 1 NC_011094.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1852672 lolB 439843002001 lolB Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein LolB YP_002114809.1 1852049 D 439843 CDS YP_002114810.1 194736140 1852672..1853520 1 NC_011094.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1853520 ipk 439843002002 ipk Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002114810.1 1852672 D 439843 CDS YP_002114811.1 194735494 complement(1853517..1853687) 1 NC_011094.1 identified by glimmer; hypothetical protein 1853687 439843002003 SeSA_A1918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114811.1 1853517 R 439843 CDS YP_002114812.1 194735902 1853786..1854733 1 NC_011094.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1854733 prs 439843002004 prs Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribose-phosphate pyrophosphokinase YP_002114812.1 1853786 D 439843 CDS YP_002114813.1 194734827 1854858..1856543 1 NC_011094.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1856543 ychM 439843002005 ychM Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate transporter YchM YP_002114813.1 1854858 D 439843 CDS YP_002114814.1 194734589 complement(1856588..1856866) 1 NC_011094.1 'YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function'; hypothetical protein 1856866 439843002006 SeSA_A1921 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114814.1 1856588 R 439843 CDS YP_002114815.1 194737518 1857142..1857726 1 NC_011094.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1857726 pth 439843002007 pth Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-tRNA hydrolase YP_002114815.1 1857142 D 439843 CDS YP_002114816.1 194737864 1857843..1858934 1 NC_011094.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1858934 engD 439843002008 engD Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP-dependent nucleic acid-binding protein EngD YP_002114816.1 1857843 D 439843 CDS YP_002114817.1 194736703 complement(1858950..1859120) 1 NC_011094.1 identified by glimmer; hypothetical protein 1859120 439843002009 SeSA_A1924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114817.1 1858950 R 439843 CDS YP_002114818.1 194735574 1859892..1860587 1 NC_011094.1 identified by glimmer; hypothetical protein 1860587 439843002010 SeSA_A1925 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114818.1 1859892 D 439843 CDS YP_002114819.1 194736983 complement(1861077..1862342) 1 NC_011094.1 hypothetical protein 1862342 439843002011 SeSA_A1926 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114819.1 1861077 R 439843 CDS YP_002114820.1 194736556 complement(1862611..1862739) 1 NC_011094.1 identified by glimmer; hypothetical protein 1862739 439843002012 SeSA_A1927 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114820.1 1862611 R 439843 CDS YP_002114821.2 449306301 1862835..1863953 1 NC_011094.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1863953 439843002013 SeSA_A1928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase-1 small chain YP_002114821.2 1862835 D 439843 CDS YP_002114822.1 194737319 1863950..1865743 1 NC_011094.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1865743 439843002014 SeSA_A1929 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 1 large subunit YP_002114822.1 1863950 D 439843 CDS YP_002114823.1 194736924 1865762..1866493 1 NC_011094.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1866493 cybH 439843002015 cybH Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 1 b-type cytochrome subunit YP_002114823.1 1865762 D 439843 CDS YP_002114824.1 194736426 1866490..1867086 1 NC_011094.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1867086 hybD 439843002016 hybD Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 1 maturation protease YP_002114824.1 1866490 D 439843 CDS YP_002114825.1 194737857 1867076..1867480 1 NC_011094.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1867480 439843002017 SeSA_A1932 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase-1 operon protein HyaE YP_002114825.1 1867076 D 439843 CDS YP_002114826.1 194737384 1867477..1868325 1 NC_011094.1 identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1868325 439843002018 SeSA_A1933 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase-1 operon protein HyaF YP_002114826.1 1867477 D 439843 CDS YP_002114827.1 194737726 1868400..1869944 1 NC_011094.1 identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit I 1869944 cydA 439843002019 cydA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome D ubiquinol oxidase subunit I YP_002114827.1 1868400 D 439843 CDS YP_002114828.1 194737941 1869956..1871092 1 NC_011094.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1871092 cydB 439843002020 cydB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome D ubiquinol oxidase subunit II YP_002114828.1 1869956 D 439843 CDS YP_002114829.1 194734885 1871589..1872863 1 NC_011094.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1872863 439843002021 SeSA_A1936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate dehydrogenase YP_002114829.1 1871589 D 439843 CDS YP_002114831.1 194737640 1873077..1874789 1 NC_011094.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1874789 treA 439843002022 treA Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalase YP_002114831.1 1873077 D 439843 CDS YP_002114832.1 194738195 complement(1874852..1875106) 1 NC_011094.1 identified by match to protein family HMM PF04226; transglycosylase-associated protein 1875106 439843002023 SeSA_A1939 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transglycosylase-associated protein YP_002114832.1 1874852 R 439843 CDS YP_002114833.1 194738062 1875275..1876009 1 NC_011094.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1876009 439843002024 SeSA_A1940 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114833.1 1875275 D 439843 CDS YP_008119772.1 513549389 complement(1876023..1876634) 1 NC_011094.1 membrane-bound lytic murein transglycosylase E 1876634 439843002025 SeSA_A1941 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane-bound lytic murein transglycosylase E YP_008119772.1 1876023 R 439843 CDS YP_002114834.1 194734546 1876805..1877719 1 NC_011094.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1877719 ldcA 439843002026 ldcA Salmonella enterica subsp. enterica serovar Schwarzengrund str. L,D-carboxypeptidase A YP_002114834.1 1876805 D 439843 CDS YP_002114835.1 194735060 1877816..1879549 1 NC_011094.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1879549 439843002027 SeSA_A1943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium/proton antiporter YP_002114835.1 1877816 D 439843 CDS YP_002114836.1 194736004 complement(1879612..1880682) 1 NC_011094.1 'catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA'; alanine racemase 1880682 dadX 439843002028 dadX Salmonella enterica subsp. enterica serovar Schwarzengrund str. alanine racemase YP_002114836.1 1879612 R 439843 CDS YP_002114837.1 194737084 complement(1880696..1881994) 1 NC_011094.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1881994 439843002029 SeSA_A1945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-amino acid dehydrogenase small subunit YP_002114837.1 1880696 R 439843 CDS YP_002114838.1 194735382 1882317..1883849 1 NC_011094.1 identified by match to protein family HMM PF04293; SpoVR family protein 1883849 439843002030 SeSA_A1946 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SpoVR family protein YP_002114838.1 1882317 D 439843 CDS YP_002114839.1 194735892 complement(1883896..1884615) 1 NC_011094.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1884615 fadR 439843002031 fadR Salmonella enterica subsp. enterica serovar Schwarzengrund str. fatty acid metabolism regulator YP_002114839.1 1883896 R 439843 CDS YP_002114840.1 194733981 1884835..1886379 1 NC_011094.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1886379 nhaB 439843002032 nhaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium/proton antiporter YP_002114840.1 1884835 D 439843 CDS YP_002114841.1 194734519 1886521..1887051 1 NC_011094.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1887051 439843002033 SeSA_A1949 Salmonella enterica subsp. enterica serovar Schwarzengrund str. disulfide bond formation protein B YP_002114841.1 1886521 D 439843 CDS YP_002114842.1 194735229 1887160..1887501 1 NC_011094.1 identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1887501 439843002034 SeSA_A1950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tellurite resistance protein TehB YP_002114842.1 1887160 D 439843 CDS YP_002114843.1 194735652 complement(1887573..1887746) 1 NC_011094.1 identified by match to protein family HMM PF08178; hypothetical protein 1887746 439843002035 SeSA_A1951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114843.1 1887573 R 439843 CDS YP_002114844.1 194733986 complement(1887939..1888076) 1 NC_011094.1 hypothetical protein 1888076 439843002036 SeSA_A1952 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114844.1 1887939 R 439843 CDS YP_002114845.1 194734335 complement(1888428..1888889) 1 NC_011094.1 identified by match to protein family HMM PF03692; hypothetical protein 1888889 439843002037 SeSA_A1953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114845.1 1888428 R 439843 CDS YP_002114846.1 194737229 complement(1888967..1889626) 1 NC_011094.1 identified by match to protein family HMM PF01557; hypothetical protein 1889626 439843002038 SeSA_A1954 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114846.1 1888967 R 439843 CDS YP_002114847.2 449306302 complement(1889676..1890008) 1 NC_011094.1 identified by match to protein family HMM PF05166; hypothetical protein 1890008 439843002039 SeSA_A1955 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114847.2 1889676 R 439843 CDS YP_002114848.1 194737404 1890095..1890802 1 NC_011094.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1890802 minC 439843002040 minC Salmonella enterica subsp. enterica serovar Schwarzengrund str. septum formation inhibitor YP_002114848.1 1890095 D 439843 CDS YP_002114849.1 194737905 1890826..1891638 1 NC_011094.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1891638 minD 439843002041 minD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division inhibitor MinD YP_002114849.1 1890826 D 439843 CDS YP_002114850.1 194734443 1891642..1891908 1 NC_011094.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1891908 minE 439843002042 minE Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division topological specificity factor MinE YP_002114850.1 1891642 D 439843 CDS YP_002114851.1 194734944 complement(1892030..1893157) 1 NC_011094.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 1893157 rnd 439843002043 rnd Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease D YP_002114851.1 1892030 R 439843 CDS YP_002114852.1 194735459 complement(1893230..1894915) 1 NC_011094.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1894915 439843002045 SeSA_A1961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. long-chain-fatty-acid--CoA ligase YP_002114852.1 1893230 R 439843 CDS YP_002114853.1 194736437 1894935..1895141 1 NC_011094.1 hypothetical protein 1895141 439843002046 SeSA_A1962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114853.1 1894935 D 439843 CDS YP_002114854.1 194735981 complement(1895120..1895701) 1 NC_011094.1 identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp 1895701 slp 439843002047 slp Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein Slp YP_002114854.1 1895120 R 439843 CDS YP_002114855.1 194736927 complement(1895773..1896468) 1 NC_011094.1 identified by match to protein family HMM PF00814; glycoprotease family protein 1896468 439843002048 SeSA_A1964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycoprotease family protein YP_002114855.1 1895773 R 439843 CDS YP_002114856.1 194737379 complement(1896526..1898436) 1 NC_011094.1 hypothetical protein 1898436 439843002049 SeSA_A1965 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114856.1 1896526 R 439843 CDS YP_002114857.1 194735092 1898568..1898912 1 NC_011094.1 identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1898912 439843002050 SeSA_A1966 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endoribonuclease L-PSP family protein YP_002114857.1 1898568 D 439843 CDS YP_002114858.1 194735776 complement(1898918..1899097) 1 NC_011094.1 identified by match to protein family HMM PF03701; hypothetical protein 1899097 439843002051 SeSA_A1967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114858.1 1898918 R 439843 CDS YP_002114859.1 194736555 1899178..1900542 1 NC_011094.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase, component I 1900542 pabB 439843002052 pabB Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminodeoxychorismate synthase, component I YP_002114859.1 1899178 D 439843 CDS YP_002114860.1 194737033 1900546..1901124 1 NC_011094.1 identified by match to protein family HMM PF00293; hypothetical protein 1901124 439843002053 SeSA_A1969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114860.1 1900546 D 439843 CDS YP_002114861.1 194736507 1901388..1902752 1 NC_011094.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1902752 439843002054 SeSA_A1970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-serine ammonia-lyase YP_002114861.1 1901388 D 439843 CDS YP_002114862.1 194737036 1902890..1904491 1 NC_011094.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1904491 439843002055 SeSA_A1971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002114862.1 1902890 D 439843 CDS YP_002114863.1 194734512 complement(1904513..1906072) 1 NC_011094.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; membrane protein, TerC family/CBS/transporter associated domain-containing protein 1906072 439843002056 SeSA_A1972 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane protein, TerC family/CBS/transporter associated domain-containing protein YP_002114863.1 1904513 R 439843 CDS YP_002114864.1 194738274 1906545..1907513 1 NC_011094.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIAB 1907513 manX 439843002057 manX Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannose-specific transporter subunit IIAB YP_002114864.1 1906545 D 439843 CDS YP_002114865.1 194735815 1907566..1908366 1 NC_011094.1 identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1908366 manY 439843002058 manY Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannose-specific transporter subunit IIC YP_002114865.1 1907566 D 439843 CDS YP_002114866.1 194734014 1908379..1909230 1 NC_011094.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1909230 manZ 439843002059 manZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannose-specific transporter subunit IID YP_002114866.1 1908379 D 439843 CDS YP_002114867.1 194734017 1909289..1909747 1 NC_011094.1 identified by match to protein family HMM PF06173; hypothetical protein 1909747 439843002060 SeSA_A1976 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114867.1 1909289 D 439843 CDS YP_002114868.1 194735188 1910157..1910723 1 NC_011094.1 identified by match to protein family HMM PF02659; membrane protein YebN 1910723 439843002061 SeSA_A1978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane protein YebN YP_002114868.1 1910157 D 439843 CDS YP_002114869.1 194734932 complement(1910720..1911529) 1 NC_011094.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 1911529 rrmA 439843002062 rrmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA methyltransferase YP_002114869.1 1910720 R 439843 CDS YP_002114870.1 194735872 complement(1911595..1913340) 1 NC_011094.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 1913340 439843002063 SeSA_A1980 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidoglycan synthetase FtsI YP_002114870.1 1911595 R 439843 CDS YP_002114871.1 194735301 complement(1913560..1913769) 1 NC_011094.1 identified by match to protein family HMM PF00313; cold shock-like protein CspC 1913769 cspC 439843002064 cspC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cold shock-like protein CspC YP_002114871.1 1913560 R 439843 CDS YP_002114872.1 194735812 complement(1914574..1914861) 1 NC_011094.1 hypothetical protein 1914861 439843002065 SeSA_A1982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114872.1 1914574 R 439843 CDS YP_002114873.1 194736347 complement(1914932..1915075) 1 NC_011094.1 hypothetical protein 1915075 439843002066 SeSA_A1983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114873.1 1914932 R 439843 CDS YP_002114874.1 194736958 1915233..1915472 1 NC_011094.1 hypothetical protein 1915472 439843002067 SeSA_A1984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114874.1 1915233 D 439843 CDS YP_002114875.1 194734578 complement(1915684..1916475) 1 NC_011094.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR 1916475 439843002068 SeSA_A1985 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator KdgR YP_002114875.1 1915684 R 439843 CDS YP_008119773.1 513549390 1916651..1918024 1 NC_011094.1 major facilitatior superfamily transporter 1918024 439843002069 SeSA_A1986 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitatior superfamily transporter YP_008119773.1 1916651 D 439843 CDS YP_002114876.1 194736642 complement(1918072..1918953) 1 NC_011094.1 metalloprotease; heat shock protein HtpX 1918953 439843002070 SeSA_A1987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein HtpX YP_002114876.1 1918072 R 439843 CDS YP_002114877.1 194736314 complement(1919146..1921242) 1 NC_011094.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1921242 prc 439843002071 prc Salmonella enterica subsp. enterica serovar Schwarzengrund str. carboxy-terminal protease YP_002114877.1 1919146 R 439843 CDS YP_002114878.1 194735396 complement(1921214..1921900) 1 NC_011094.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1921900 proQ 439843002072 proQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. solute/DNA competence effector YP_002114878.1 1921214 R 439843 CDS YP_002114879.2 449306303 complement(1921998..1922582) 1 NC_011094.1 identified by match to protein family HMM PF01590; GAF domain-containing protein 1922582 439843002073 SeSA_A1990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GAF domain-containing protein YP_002114879.2 1921998 R 439843 CDS YP_002114880.1 194735795 1922624..1923907 1 NC_011094.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; integral membrane protein, PqiA family protein 1923907 439843002074 SeSA_A1991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integral membrane protein, PqiA family protein YP_002114880.1 1922624 D 439843 CDS YP_002114881.1 194735284 1923870..1926509 1 NC_011094.1 identified by match to protein family HMM PF02470; mce-like protein 1926509 439843002075 SeSA_A1992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mce-like protein YP_002114881.1 1923870 D 439843 CDS YP_002114882.1 194734489 1926485..1928026 1 NC_011094.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1928026 yebU 439843002076 yebU Salmonella enterica subsp. enterica serovar Schwarzengrund str. rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_002114882.1 1926485 D 439843 CDS YP_002114883.1 194733927 1928140..1928379 1 NC_011094.1 identified by match to protein family HMM PF07351; hypothetical protein 1928379 439843002077 SeSA_A1994 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114883.1 1928140 D 439843 CDS YP_002114884.1 194736203 1928490..1928681 1 NC_011094.1 identified by match to protein family HMM PF07358; hypothetical protein 1928681 439843002078 SeSA_A1995 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114884.1 1928490 D 439843 CDS YP_002114885.2 449306304 complement(1928700..1929350) 1 NC_011094.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1929350 pphA 439843002079 pphA Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine/threonine protein phosphatase 1 YP_002114885.2 1928700 R 439843 CDS YP_002114886.1 194735534 complement(1929575..1929739) 1 NC_011094.1 hypothetical protein 1929739 439843002080 SeSA_A1997 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114886.1 1929575 R 439843 CDS YP_002114887.1 194735007 complement(1929825..1929950) 1 NC_011094.1 hypothetical protein 1929950 439843002081 SeSA_A1998 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114887.1 1929825 R 439843 CDS YP_002114888.2 449306305 complement(1930024..1930746) 1 NC_011094.1 identified by match to protein family HMM PF07487; guanine nucleotide exchange factor SopE 1930746 439843002082 SeSA_A1999 Salmonella enterica subsp. enterica serovar Schwarzengrund str. guanine nucleotide exchange factor SopE YP_002114888.2 1930024 R 439843 CDS YP_002114889.1 194737436 1931027..1931158 1 NC_011094.1 identified by glimmer; hypothetical protein 1931158 439843002083 SeSA_A2000 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114889.1 1931027 D 439843 CDS YP_002114890.1 194737393 1931430..1931825 1 NC_011094.1 identified by match to protein family HMM PF07166; hypothetical protein 1931825 439843002084 SeSA_A2001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114890.1 1931430 D 439843 CDS YP_002114891.1 194736880 1932153..1932629 1 NC_011094.1 hypothetical protein 1932629 439843002085 SeSA_A2002 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114891.1 1932153 D 439843 CDS YP_002114892.1 194736406 complement(1933017..1933436) 1 NC_011094.1 identified by match to protein family HMM PF00583; acetyltransferase 1933436 439843002086 SeSA_A2003 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase YP_002114892.1 1933017 R 439843 CDS YP_002114893.1 194735974 complement(1933565..1933765) 1 NC_011094.1 hypothetical protein 1933765 439843002087 SeSA_A2004 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114893.1 1933565 R 439843 CDS YP_002114894.1 194735335 1933812..1933934 1 NC_011094.1 identified by glimmer; hypothetical protein 1933934 439843002088 SeSA_A2005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114894.1 1933812 D 439843 CDS YP_002114895.1 194734693 1933981..1934127 1 NC_011094.1 hypothetical protein 1934127 439843002089 SeSA_A2006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114895.1 1933981 D 439843 CDS YP_002114897.1 194735626 1935863..1935991 1 NC_011094.1 identified by glimmer; hypothetical protein 1935991 439843002090 SeSA_A2009 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114897.1 1935863 D 439843 CDS YP_002114898.1 194734291 1937432..1937590 1 NC_011094.1 hypothetical protein 1937590 439843002092 SeSA_A2011 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114898.1 1937432 D 439843 CDS YP_002114899.1 194738032 1937594..1938214 1 NC_011094.1 hypothetical protein 1938214 439843002093 SeSA_A2012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114899.1 1937594 D 439843 CDS YP_002114900.1 194737773 1938702..1938848 1 NC_011094.1 hypothetical protein 1938848 439843002094 SeSA_A2013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114900.1 1938702 D 439843 CDS YP_002114901.1 194737039 complement(1939362..1939487) 1 NC_011094.1 arsenical pump membrane protein 1939487 439843002095 SeSA_A2014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arsenical pump membrane protein YP_002114901.1 1939362 R 439843 CDS YP_002114902.1 194736320 complement(1940354..1941682) 1 NC_011094.1 identified by match to protein family HMM PF02413; match to protein family HMM PF07484; side tail fiber protein 1941682 439843002096 SeSA_A2015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. side tail fiber protein YP_002114902.1 1940354 R 439843 CDS YP_002114903.1 194738095 complement(1942235..1942726) 1 NC_011094.1 identified by match to protein family HMM PF07278; hypothetical protein 1942726 439843002098 SeSA_A2018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114903.1 1942235 R 439843 CDS YP_002114904.1 194737529 1943029..1943196 1 NC_011094.1 hypothetical protein 1943196 439843002099 SeSA_A2019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114904.1 1943029 D 439843 CDS YP_002114905.1 194735706 complement(1943982..1944269) 1 NC_011094.1 lytic enzyme 1944269 439843002100 SeSA_A2021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lytic enzyme YP_002114905.1 1943982 R 439843 CDS YP_002114906.1 194734908 1944300..1945406 1 NC_011094.1 exodeoxyribonuclease 8 1945406 439843002101 SeSA_A2022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exodeoxyribonuclease 8 YP_002114906.1 1944300 D 439843 CDS YP_002114907.1 194734720 1945403..1946482 1 NC_011094.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003; phage integrase 1946482 439843002102 SeSA_A2023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage integrase YP_002114907.1 1945403 D 439843 CDS YP_002114908.1 194738239 complement(1946857..1947210) 1 NC_011094.1 hypothetical protein 1947210 439843002105 SeSA_A2027 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114908.1 1946857 R 439843 CDS YP_002114909.1 194737498 complement(1947227..1948102) 1 NC_011094.1 identified by match to protein family HMM PF05425; copper resistance protein D 1948102 439843002106 SeSA_A2028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper resistance protein D YP_002114909.1 1947227 R 439843 CDS YP_002114910.1 194737914 complement(1948103..1948477) 1 NC_011094.1 identified by match to protein family HMM PF04234; hypothetical protein 1948477 439843002107 SeSA_A2029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114910.1 1948103 R 439843 CDS YP_002114911.1 194734509 1948615..1948845 1 NC_011094.1 identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 1948845 439843002108 SeSA_A2030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit theta YP_002114911.1 1948615 D 439843 CDS YP_002114912.1 194734028 1948953..1949609 1 NC_011094.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1949609 439843002109 SeSA_A2031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbon-nitrogen family hydrolase YP_002114912.1 1948953 D 439843 CDS YP_002114913.1 194735808 1949633..1950331 1 NC_011094.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1950331 439843002110 SeSA_A2032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exodeoxyribonuclease X YP_002114913.1 1949633 D 439843 CDS YP_002114914.1 194735292 complement(1950368..1952419) 1 NC_011094.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1952419 439843002111 SeSA_A2033 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protease 2 YP_002114914.1 1950368 R 439843 CDS YP_002114915.1 194737643 complement(1952632..1953291) 1 NC_011094.1 identified by match to protein family HMM PF04391; hypothetical protein 1953291 439843002112 SeSA_A2034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114915.1 1952632 R 439843 CDS YP_002114916.1 194737986 complement(1953385..1953738) 1 NC_011094.1 secreted protein; unknown function; hypothetical protein 1953738 439843002113 SeSA_A2035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114916.1 1953385 R 439843 CDS YP_002114917.1 194736396 complement(1953806..1954096) 1 NC_011094.1 identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG 1954096 439843002114 SeSA_A2036 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA damage-inducible protein YebG YP_002114917.1 1953806 R 439843 CDS YP_002114918.1 194736750 1954227..1955405 1 NC_011094.1 'non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis'; phosphoribosylglycinamide formyltransferase 2 1955405 purT 439843002115 purT Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylglycinamide formyltransferase 2 YP_002114918.1 1954227 D 439843 CDS YP_002114919.1 194734582 complement(1955505..1956146) 1 NC_011094.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1956146 eda 439843002116 eda Salmonella enterica subsp. enterica serovar Schwarzengrund str. keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002114919.1 1955505 R 439843 CDS YP_002114920.1 194734911 complement(1956184..1957995) 1 NC_011094.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1957995 edd 439843002117 edd Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphogluconate dehydratase YP_002114920.1 1956184 R 439843 CDS YP_002114921.1 194737083 complement(1958230..1959705) 1 NC_011094.1 'catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate'; glucose-6-phosphate 1-dehydrogenase 1959705 zwf 439843002118 zwf Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-6-phosphate 1-dehydrogenase YP_002114921.1 1958230 R 439843 CDS YP_002114922.1 194736565 1960047..1960916 1 NC_011094.1 'Represses the expression of the zwf, eda, glp and gap'; DNA-binding transcriptional regulator HexR 1960916 439843002119 SeSA_A2041 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator HexR YP_002114922.1 1960047 D 439843 CDS YP_002114923.1 194735271 1961040..1962482 1 NC_011094.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1962482 pykA 439843002120 pykA Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate kinase YP_002114923.1 1961040 D 439843 CDS YP_002114924.1 194736882 complement(1962555..1963526) 1 NC_011094.1 'Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA'; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1963526 msbB 439843002121 msbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002114924.1 1962555 R 439843 CDS YP_002114925.1 194734531 complement(1963643..1964962) 1 NC_011094.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein 1964962 439843002122 SeSA_A2044 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114925.1 1963643 R 439843 CDS YP_002114926.1 194734060 complement(1964978..1965922) 1 NC_011094.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 1965922 znuA 439843002123 znuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity zinc transporter periplasmic protein YP_002114926.1 1964978 R 439843 CDS YP_002114927.1 194738340 1966001..1966756 1 NC_011094.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1966756 znuC 439843002124 znuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity zinc transporter ATPase YP_002114927.1 1966001 D 439843 CDS YP_002114928.1 194737285 1966753..1967538 1 NC_011094.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1967538 znuB 439843002125 znuB Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity zinc transporter membrane protein YP_002114928.1 1966753 D 439843 CDS YP_002114929.1 194735485 complement(1967617..1968627) 1 NC_011094.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1968627 ruvB 439843002126 ruvB Salmonella enterica subsp. enterica serovar Schwarzengrund str. Holliday junction DNA helicase RuvB YP_002114929.1 1967617 R 439843 CDS YP_002114930.1 194736016 complement(1968636..1969247) 1 NC_011094.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA 1969247 ruvA 439843002127 ruvA Salmonella enterica subsp. enterica serovar Schwarzengrund str. holliday junction DNA helicase RuvA YP_002114930.1 1968636 R 439843 CDS YP_002114931.1 194737849 complement(1969606..1970265) 1 NC_011094.1 hypothetical protein 1970265 439843002128 SeSA_A2050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114931.1 1969606 R 439843 CDS YP_002114932.1 194734959 1970507..1971106 1 NC_011094.1 identified by match to protein family HMM PF06520; hypothetical protein 1971106 439843002129 SeSA_A2051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114932.1 1970507 D 439843 CDS YP_002114933.1 194736889 complement(1971108..1971629) 1 NC_011094.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase 1971629 ruvC 439843002130 ruvC Salmonella enterica subsp. enterica serovar Schwarzengrund str. holliday junction resolvase YP_002114933.1 1971108 R 439843 CDS YP_002114934.1 194736427 complement(1971666..1972406) 1 NC_011094.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1972406 439843002131 SeSA_A2053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114934.1 1971666 R 439843 CDS YP_002114935.1 194735985 complement(1972436..1972888) 1 NC_011094.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1972888 ntpA 439843002132 ntpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dATP pyrophosphohydrolase YP_002114935.1 1972436 R 439843 CDS YP_002114936.1 194735477 complement(1972991..1974763) 1 NC_011094.1 'catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes'; aspartyl-tRNA synthetase 1974763 aspS 439843002133 aspS Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartyl-tRNA synthetase YP_002114936.1 1972991 R 439843 CDS YP_002114937.1 194737395 1975088..1975654 1 NC_011094.1 identified by match to protein family HMM PF00857; hypothetical protein 1975654 439843002134 SeSA_A2056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114937.1 1975088 D 439843 CDS YP_002114938.1 194734319 1975651..1976469 1 NC_011094.1 identified by match to protein family HMM PF01904; hypothetical protein 1976469 439843002135 SeSA_A2057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114938.1 1975651 D 439843 CDS YP_002114939.1 194736450 1976522..1976917 1 NC_011094.1 hypothetical protein 1976917 439843002136 SeSA_A2058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114939.1 1976522 D 439843 CDS YP_002114940.1 194736251 1976958..1977701 1 NC_011094.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 1977701 439843002137 SeSA_A2059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002114940.1 1976958 D 439843 CDS YP_002114941.1 194735736 1977698..1978669 1 NC_011094.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM TIGR00452; methyltransferase 1978669 439843002138 SeSA_A2060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002114941.1 1977698 D 439843 CDS YP_002114942.1 194735535 complement(1978905..1979651) 1 NC_011094.1 identified by match to protein family HMM PF03932; copper homeostasis protein CutC 1979651 439843002139 SeSA_A2061 Salmonella enterica subsp. enterica serovar Schwarzengrund str. copper homeostasis protein CutC YP_002114942.1 1978905 R 439843 CDS YP_002114943.1 194735036 complement(1979671..1980240) 1 NC_011094.1 identified by match to protein family HMM PF06185; hypothetical protein 1980240 439843002140 SeSA_A2062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114943.1 1979671 R 439843 CDS YP_002114945.1 194737429 1980477..1982210 1 NC_011094.1 'catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase'; arginyl-tRNA synthetase 1982210 argS 439843002141 argS Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginyl-tRNA synthetase YP_002114945.1 1980477 D 439843 CDS YP_002114946.1 194734378 1982399..1984270 1 NC_011094.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 1984270 mrdA 439843002142 mrdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. penicillin-binding protein 2 YP_002114946.1 1982399 D 439843 CDS YP_002114947.1 194736201 complement(1984324..1985463) 1 NC_011094.1 identified by match to protein family HMM PF07470; glycosyl hydrolase, family 88 1985463 439843002143 SeSA_A2066 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl hydrolase, family 88 YP_002114947.1 1984324 R 439843 CDS YP_002114948.1 194737915 complement(1985700..1986092) 1 NC_011094.1 identified by match to protein family HMM PF06366; flagellar protein FlhE 1986092 439843002144 SeSA_A2067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar protein FlhE YP_002114948.1 1985700 R 439843 CDS YP_002114949.1 194735453 complement(1986092..1988170) 1 NC_011094.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1988170 flhA 439843002145 flhA Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FlhA YP_002114949.1 1986092 R 439843 CDS YP_002114950.1 194734592 complement(1988163..1989314) 1 NC_011094.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1989314 flhB 439843002146 flhB Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FlhB YP_002114950.1 1988163 R 439843 CDS YP_002114951.1 194737784 complement(1989508..1990152) 1 NC_011094.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1990152 cheZ 439843002147 cheZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis regulator CheZ YP_002114951.1 1989508 R 439843 CDS YP_002114952.1 194738315 complement(1990163..1990552) 1 NC_011094.1 'chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble'; chemotaxis regulatory protein CheY 1990552 cheY 439843002148 cheY Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis regulatory protein CheY YP_002114952.1 1990163 R 439843 CDS YP_002114953.1 194736588 complement(1990570..1991619) 1 NC_011094.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1991619 cheB 439843002149 cheB Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis-specific methylesterase YP_002114953.1 1990570 R 439843 CDS YP_002114954.1 194737081 complement(1991616..1992482) 1 NC_011094.1 methylates the MCP; chemotaxis methyltransferase CheR 1992482 cheR 439843002150 cheR Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis methyltransferase CheR YP_002114954.1 1991616 R 439843 CDS YP_002114955.1 194734290 complement(1992643..1994304) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II 1994304 439843002151 SeSA_A2074 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein II YP_002114955.1 1992643 R 439843 CDS YP_002114956.1 194736100 1994366..1994497 1 NC_011094.1 identified by glimmer; hypothetical protein 1994497 439843002152 SeSA_A2075 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114956.1 1994366 D 439843 CDS YP_002114957.1 194734423 complement(1994541..1995044) 1 NC_011094.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein 1995044 439843002153 SeSA_A2076 Salmonella enterica subsp. enterica serovar Schwarzengrund str. purine-binding chemotaxis protein YP_002114957.1 1994541 R 439843 CDS YP_002114958.1 194734522 complement(1995065..1997074) 1 NC_011094.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1997074 439843002154 SeSA_A2077 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis protein CheA YP_002114958.1 1995065 R 439843 CDS YP_002114959.1 194737421 complement(1997085..1998014) 1 NC_011094.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1998014 motB 439843002155 motB Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar motor protein MotB YP_002114959.1 1997085 R 439843 CDS YP_002114960.1 194735541 complement(1998011..1998898) 1 NC_011094.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1998898 motA 439843002156 motA Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar motor protein MotA YP_002114960.1 1998011 R 439843 CDS YP_002114961.1 194737288 complement(1999023..1999601) 1 NC_011094.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1999601 flhC 439843002157 flhC Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator FlhC YP_002114961.1 1999023 R 439843 CDS YP_002114962.1 194737939 complement(1999604..1999945) 1 NC_011094.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1999945 flhD 439843002158 flhD Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator FlhD YP_002114962.1 1999604 R 439843 CDS YP_002114963.1 194737101 2000741..2001169 1 NC_011094.1 'ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspC 2001169 439843002159 SeSA_A2082 Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein UspC YP_002114963.1 2000741 D 439843 CDS YP_002114964.1 194736914 complement(2001187..2002608) 1 NC_011094.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase 2002608 otsA 439843002160 otsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalose-6-phosphate synthase YP_002114964.1 2001187 R 439843 CDS YP_002114965.1 194736574 complement(2002583..2003386) 1 NC_011094.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 2003386 otsB 439843002161 otsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalose-6-phosphate phosphatase YP_002114965.1 2002583 R 439843 CDS YP_002114966.1 194737043 complement(2004018..2004575) 1 NC_011094.1 identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein 2004575 439843002162 SeSA_A2085 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ThiJ/PfpI domain-containing protein YP_002114966.1 2004018 R 439843 CDS YP_002114967.1 194735490 2004637..2004786 1 NC_011094.1 identified by glimmer; hypothetical protein 2004786 439843002163 SeSA_A2086 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114967.1 2004637 D 439843 CDS YP_002114968.1 194735836 2005133..2005636 1 NC_011094.1 identified by match to protein family HMM PF00210; ferritin 2005636 439843002164 SeSA_A2087 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferritin YP_002114968.1 2005133 D 439843 CDS YP_002114969.1 194738084 complement(2005815..2006453) 1 NC_011094.1 identified by match to protein family HMM PF02502; hypothetical protein 2006453 439843002165 SeSA_A2088 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114969.1 2005815 R 439843 CDS YP_002114970.1 194736237 2006664..2006999 1 NC_011094.1 outer membrane lipoprotein 2006999 439843002166 SeSA_A2089 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002114970.1 2006664 D 439843 CDS YP_002114971.1 194734185 2007239..2007736 1 NC_011094.1 cytoplasmic iron storage protein; ferritin 2007736 ftnA 439843002167 ftnA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferritin YP_002114971.1 2007239 D 439843 CDS YP_002114972.1 194734952 complement(2007782..2008021) 1 NC_011094.1 hypothetical protein 2008021 439843002168 SeSA_A2091 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114972.1 2007782 R 439843 CDS YP_002114973.1 194737475 2008191..2009459 1 NC_011094.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 2009459 439843002169 SeSA_A2092 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tyrosine-specific transport protein YP_002114973.1 2008191 D 439843 CDS YP_002114974.1 194738169 complement(2009534..2010199) 1 NC_011094.1 identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein 2010199 439843002170 SeSA_A2093 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114974.1 2009534 R 439843 CDS YP_002114975.1 194737464 complement(2010438..2010764) 1 NC_011094.1 glucose-6-phosphate dehydrogenase 2010764 439843002171 SeSA_A2094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-6-phosphate dehydrogenase YP_002114975.1 2010438 R 439843 CDS YP_002114976.1 194738052 complement(2010977..2012410) 1 NC_011094.1 identified by match to protein family HMM PF00877; cell wall-associated hydrolase 2012410 439843002172 SeSA_A2095 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell wall-associated hydrolase YP_002114976.1 2010977 R 439843 CDS YP_008119774.1 513549392 complement(2012630..2012914) 1 NC_011094.1 hypothetical protein 2012914 439843002173 SeSA_A2096 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119774.1 2012630 R 439843 CDS YP_002114977.1 194736793 complement(2013007..2013135) 1 NC_011094.1 identified by glimmer; hypothetical protein 2013135 439843002174 SeSA_A2097 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114977.1 2013007 R 439843 CDS YP_002114978.1 194734816 complement(2013662..2014210) 1 NC_011094.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase 2014210 pgsA 439843002178 pgsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatidylglycerophosphate synthetase YP_002114978.1 2013662 R 439843 CDS YP_002114979.1 194738201 complement(2014267..2016099) 1 NC_011094.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2016099 uvrC 439843002179 uvrC Salmonella enterica subsp. enterica serovar Schwarzengrund str. excinuclease ABC subunit C YP_002114979.1 2014267 R 439843 CDS YP_002114980.1 194733956 complement(2016096..2016752) 1 NC_011094.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2016752 uvrY 439843002180 uvrY Salmonella enterica subsp. enterica serovar Schwarzengrund str. response regulator YP_002114980.1 2016096 R 439843 CDS YP_002114981.1 194734310 2017064..2017219 1 NC_011094.1 hypothetical protein 2017219 439843002181 SeSA_A2104 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114981.1 2017064 D 439843 CDS YP_002114982.1 194735230 2017216..2017440 1 NC_011094.1 hypothetical protein 2017440 439843002182 SeSA_A2105 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114982.1 2017216 D 439843 CDS YP_002114983.1 194735895 complement(2017507..2018229) 1 NC_011094.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 2018229 439843002183 SeSA_A2106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator SdiA YP_002114983.1 2017507 R 439843 CDS YP_002114984.1 194734491 complement(2018462..2019214) 1 NC_011094.1 identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC 2019214 439843002184 SeSA_A2107 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino-acid ABC transporter ATP-binding protein YecC YP_002114984.1 2018462 R 439843 CDS YP_002114985.1 194735316 complement(2019211..2019879) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 2019879 439843002185 SeSA_A2108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid ABC transporter permease YP_002114985.1 2019211 R 439843 CDS YP_002114986.1 194736078 complement(2019900..2020886) 1 NC_011094.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2020886 439843002186 SeSA_A2109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-cysteine desulfhydrase YP_002114986.1 2019900 R 439843 CDS YP_002114987.1 194736301 complement(2021040..2021840) 1 NC_011094.1 identified by match to protein family HMM PF00497; cystine transporter subunit 2021840 439843002187 SeSA_A2110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cystine transporter subunit YP_002114987.1 2021040 R 439843 CDS YP_008119775.1 513549393 complement(2021987..2022508) 1 NC_011094.1 flagellar biosynthesis protein FliZ 2022508 439843002188 SeSA_A2111 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliZ YP_008119775.1 2021987 R 439843 CDS YP_002114988.1 194736051 complement(2022597..2023316) 1 NC_011094.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2023316 fliA 439843002189 fliA Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis sigma factor YP_002114988.1 2022597 R 439843 CDS YP_002114989.1 194736079 complement(2023513..2024718) 1 NC_011094.1 lysine-N-methylase 2024718 439843002190 SeSA_A2113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine-N-methylase YP_002114989.1 2023513 R 439843 CDS YP_002114990.1 194737030 complement(2024797..2026317) 1 NC_011094.1 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin 2026317 439843002191 SeSA_A2114 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellin YP_002114990.1 2024797 R 439843 CDS YP_002114991.1 194736415 complement(2026335..2026472) 1 NC_011094.1 hypothetical protein 2026472 439843002192 SeSA_A2116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114991.1 2026335 R 439843 CDS YP_002114992.1 194737995 2026467..2026595 1 NC_011094.1 identified by glimmer; hypothetical protein 2026595 439843002193 SeSA_A2115 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114992.1 2026467 D 439843 CDS YP_002114993.1 194738249 2026574..2027977 1 NC_011094.1 involved in flagellin assembly; flagellar capping protein 2027977 fliD 439843002194 fliD Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar capping protein YP_002114993.1 2026574 D 439843 CDS YP_002114994.1 194734080 2027992..2028399 1 NC_011094.1 flagellin specific chaperone; flagellar protein FliS 2028399 fliS 439843002195 fliS Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar protein FliS YP_002114994.1 2027992 D 439843 CDS YP_002114995.1 194734713 2028399..2028767 1 NC_011094.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2028767 439843002196 SeSA_A2119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliT YP_002114995.1 2028399 D 439843 CDS YP_002114996.1 194735074 2028839..2030323 1 NC_011094.1 'converts 1,4-alpha-D-glucans to maltodextrin'; alpha-amylase 2030323 439843002197 SeSA_A2120 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-amylase YP_002114996.1 2028839 D 439843 CDS YP_002114997.1 194735051 complement(2030363..2030776) 1 NC_011094.1 hypothetical protein 2030776 439843002198 SeSA_A2121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114997.1 2030363 R 439843 CDS YP_002114998.2 449306306 2030902..2032167 1 NC_011094.1 identified by match to protein family HMM PF04143; inner membrane protein 2032167 439843002199 SeSA_A2122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane protein YP_002114998.2 2030902 D 439843 CDS YP_002114999.1 194735386 2032164..2032397 1 NC_011094.1 identified by match to protein family HMM PF01206; hypothetical protein 2032397 439843002200 SeSA_A2123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002114999.1 2032164 D 439843 CDS YP_002115000.1 194737238 2032663..2033049 1 NC_011094.1 50S ribosomal protein 2033049 439843002201 SeSA_A2124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein YP_002115000.1 2032663 D 439843 CDS YP_002115001.1 194736522 complement(2033169..2033483) 1 NC_011094.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2033483 fliE 439843002202 fliE Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar hook-basal body protein FliE YP_002115001.1 2033169 R 439843 CDS YP_002115002.1 194737985 complement(2033530..2033679) 1 NC_011094.1 hypothetical protein 2033679 439843002203 SeSA_A2126 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115002.1 2033530 R 439843 CDS YP_002115003.1 194736346 2033643..2035382 1 NC_011094.1 'the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod'; flagellar MS-ring protein 2035382 fliF 439843002204 fliF Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar MS-ring protein YP_002115003.1 2033643 D 439843 CDS YP_002115004.1 194736557 2035375..2036370 1 NC_011094.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2036370 fliG 439843002205 fliG Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar motor switch protein G YP_002115004.1 2035375 D 439843 CDS YP_002115005.1 194738159 2036363..2037070 1 NC_011094.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2037070 fliH 439843002206 fliH Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar assembly protein H YP_002115005.1 2036363 D 439843 CDS YP_002115006.1 194737833 2037070..2038440 1 NC_011094.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2038440 fliI 439843002207 fliI Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellum-specific ATP synthase YP_002115006.1 2037070 D 439843 CDS YP_002115007.1 194734940 2038462..2038905 1 NC_011094.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2038905 fliJ 439843002208 fliJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis chaperone YP_002115007.1 2038462 D 439843 CDS YP_002115008.1 194735669 2038902..2040125 1 NC_011094.1 identified by match to protein family HMM PF02120; flagellar hook-length control protein 2040125 439843002209 SeSA_A2132 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar hook-length control protein YP_002115008.1 2038902 D 439843 CDS YP_002115009.1 194736445 2040230..2040697 1 NC_011094.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2040697 fliL 439843002210 fliL Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar basal body-associated protein FliL YP_002115009.1 2040230 D 439843 CDS YP_002115010.1 194737897 2040702..2041706 1 NC_011094.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2041706 fliM 439843002211 fliM Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar motor switch protein FliM YP_002115010.1 2040702 D 439843 CDS YP_002115011.1 194734159 2041703..2042116 1 NC_011094.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2042116 fliN 439843002212 fliN Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar motor switch protein FliN YP_002115011.1 2041703 D 439843 CDS YP_002115012.1 194736910 2042116..2042493 1 NC_011094.1 'with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus'; flagellar biosynthesis protein FliO 2042493 439843002213 SeSA_A2136 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliO YP_002115012.1 2042116 D 439843 CDS YP_002115013.1 194737682 2042493..2043230 1 NC_011094.1 'FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliP 2043230 fliP 439843002214 fliP Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliP YP_002115013.1 2042493 D 439843 CDS YP_002115014.1 194735991 2043240..2043509 1 NC_011094.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2043509 fliQ 439843002215 fliQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliQ YP_002115014.1 2043240 D 439843 CDS YP_002115015.1 194736717 2043518..2044312 1 NC_011094.1 'FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus'; flagellar biosynthesis protein FliR 2044312 fliR 439843002216 fliR Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellar biosynthesis protein FliR YP_002115015.1 2043518 D 439843 CDS YP_002115016.1 194735108 2044523..2044636 1 NC_011094.1 identified by glimmer; hypothetical protein 2044636 439843002217 SeSA_A2140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115016.1 2044523 D 439843 CDS YP_002115017.1 194735620 2044594..2045217 1 NC_011094.1 identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 2045217 rcsA 439843002218 rcsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid capsular biosynthesis activation protein A YP_002115017.1 2044594 D 439843 CDS YP_002115018.1 194736784 complement(2045256..2045453) 1 NC_011094.1 hypothetical protein 2045453 439843002219 SeSA_A2142 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115018.1 2045256 R 439843 CDS YP_002115019.1 194736052 2045579..2045806 1 NC_011094.1 hypothetical protein 2045806 439843002220 SeSA_A2143 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115019.1 2045579 D 439843 CDS YP_002115020.1 194735454 2046116..2046931 1 NC_011094.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2046931 439843002222 SeSA_A2145 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannosyl-3-phosphoglycerate phosphatase YP_002115020.1 2046116 D 439843 CDS YP_002115021.1 194736370 complement(2046910..2048622) 1 NC_011094.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein 2048622 439843002223 SeSA_A2146 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose synthesis regulatory protein YP_002115021.1 2046910 R 439843 CDS YP_002115022.1 194737328 complement(2048787..2048972) 1 NC_011094.1 hypothetical protein 2048972 439843002224 SeSA_A2147 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115022.1 2048787 R 439843 CDS YP_002115023.1 194737004 complement(2049049..2049960) 1 NC_011094.1 identified by match to protein family HMM PF05661; hypothetical protein 2049960 439843002225 SeSA_A2148 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115023.1 2049049 R 439843 CDS YP_002115024.1 194737351 2050136..2051056 1 NC_011094.1 identified by match to protein family HMM PF00892; hypothetical protein 2051056 439843002226 SeSA_A2149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115024.1 2050136 D 439843 CDS YP_002115025.1 194737933 complement(2051045..2051515) 1 NC_011094.1 identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein 2051515 439843002227 SeSA_A2150 Salmonella enterica subsp. enterica serovar Schwarzengrund str. very short patch repair protein YP_002115025.1 2051045 R 439843 CDS YP_002115026.1 194734985 complement(2051496..2052926) 1 NC_011094.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase 2052926 439843002228 SeSA_A2151 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA cytosine methylase YP_002115026.1 2051496 R 439843 CDS YP_002115027.1 194734380 complement(2053000..2053695) 1 NC_011094.1 identified by match to protein family HMM PF01966; hypothetical protein 2053695 439843002229 SeSA_A2152 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115027.1 2053000 R 439843 CDS YP_002115028.1 194735801 complement(2053787..2054053) 1 NC_011094.1 outer membrane protein N 2054053 439843002230 SeSA_A2153 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein N YP_002115028.1 2053787 R 439843 CDS YP_002115029.1 194735269 complement(2054193..2054324) 1 NC_011094.1 identified by glimmer; hypothetical protein 2054324 439843002231 SeSA_A2154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115029.1 2054193 R 439843 CDS YP_002115030.1 194737988 2054736..2055938 1 NC_011094.1 identified by match to protein family HMM PF00267; outer membrane protein F 2055938 439843002232 SeSA_A2155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein F YP_002115030.1 2054736 D 439843 CDS YP_008119776.1 513549395 complement(2056398..2056610) 1 NC_011094.1 cold shock DNA-binding protein 2056610 439843002233 SeSA_A2156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cold shock DNA-binding protein YP_008119776.1 2056398 R 439843 CDS YP_002115031.1 194736742 complement(2056857..2056976) 1 NC_011094.1 identified by glimmer; hypothetical protein 2056976 439843002234 SeSA_A2157 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115031.1 2056857 R 439843 CDS YP_002115032.1 194736288 complement(2057065..2058333) 1 NC_011094.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2058333 umuC 439843002235 umuC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase V subunit UmuC YP_002115032.1 2057065 R 439843 CDS YP_002115033.1 194736107 complement(2058336..2058755) 1 NC_011094.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2058755 439843002236 SeSA_A2159 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase V subunit UmuD YP_002115033.1 2058336 R 439843 CDS YP_002115034.1 194735598 complement(2058882..2059043) 1 NC_011094.1 hypothetical protein 2059043 439843002237 SeSA_A2160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115034.1 2058882 R 439843 CDS YP_002115035.1 194734800 2059525..2060322 1 NC_011094.1 identified by match to protein family HMM PF06167; hypothetical protein 2060322 439843002239 SeSA_A2162 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115035.1 2059525 D 439843 CDS YP_002115036.1 194734181 2060806..2060937 1 NC_011094.1 identified by glimmer; hypothetical protein 2060937 439843002241 SeSA_A2164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115036.1 2060806 D 439843 CDS YP_002115037.1 194734912 2061435..2061563 1 NC_011094.1 identified by glimmer; hypothetical protein 2061563 439843002243 SeSA_A2166 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115037.1 2061435 D 439843 CDS YP_002115038.1 194734235 complement(2061677..2063131) 1 NC_011094.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2063131 amn 439843002244 amn Salmonella enterica subsp. enterica serovar Schwarzengrund str. AMP nucleosidase YP_002115038.1 2061677 R 439843 CDS YP_002115039.1 194736187 2063177..2063338 1 NC_011094.1 hypothetical protein 2063338 439843002245 SeSA_A2168 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115039.1 2063177 D 439843 CDS YP_002115040.1 194736840 complement(2063327..2063653) 1 NC_011094.1 identified by match to protein family HMM PF07377; hypothetical protein 2063653 439843002246 SeSA_A2169 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115040.1 2063327 R 439843 CDS YP_008119777.1 513549394 complement(2064750..2066276) 1 NC_011094.1 mate efflux family protein 2066276 439843002248 SeSA_A2171 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mate efflux family protein YP_008119777.1 2064750 R 439843 CDS YP_002115041.1 194734789 complement(2067978..2068109) 1 NC_011094.1 identified by glimmer; hypothetical protein 2068109 439843002251 SeSA_A2177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115041.1 2067978 R 439843 CDS YP_002115042.1 194737349 2068560..2069438 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 2069438 439843002252 SeSA_A2178 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002115042.1 2068560 D 439843 CDS YP_002115043.1 194737977 complement(2069588..2070583) 1 NC_011094.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 2070583 gap 439843002253 gap Salmonella enterica subsp. enterica serovar Schwarzengrund str. glyceraldehyde-3-phosphate dehydrogenase, type I YP_002115043.1 2069588 R 439843 CDS YP_002115044.1 194735050 complement(2070671..2071633) 1 NC_011094.1 identified by match to protein family HMM PF00892; transporter EamA family protein 2071633 439843002254 SeSA_A2180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter EamA family protein YP_002115044.1 2070671 R 439843 CDS YP_002115045.1 194735721 complement(2071756..2073252) 1 NC_011094.1 identified by match to protein family HMM PF00501; AMP-binding protein 2073252 439843002255 SeSA_A2181 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AMP-binding protein YP_002115045.1 2071756 R 439843 CDS YP_002115046.1 194736607 complement(2073287..2074669) 1 NC_011094.1 identified by match to protein family HMM PF01276; lysine decarboxylase 2074669 439843002256 SeSA_A2182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine decarboxylase YP_002115046.1 2073287 R 439843 CDS YP_002115047.1 194737270 complement(2075095..2075262) 1 NC_011094.1 identified by glimmer; hypothetical protein 2075262 439843002257 SeSA_A2183 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115047.1 2075095 R 439843 CDS YP_002115048.1 194737599 complement(2075825..2076754) 1 NC_011094.1 identified by match to protein family HMM PF03734; hypothetical protein 2076754 439843002258 SeSA_A2184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115048.1 2075825 R 439843 CDS YP_002115049.1 194736398 complement(2076832..2077902) 1 NC_011094.1 'catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole'; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2077902 cobT 439843002259 cobT Salmonella enterica subsp. enterica serovar Schwarzengrund str. nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002115049.1 2076832 R 439843 CDS YP_002115050.1 194734655 complement(2077929..2078672) 1 NC_011094.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2078672 cobS 439843002260 cobS Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalamin synthase YP_002115050.1 2077929 R 439843 CDS YP_002115051.1 194737416 complement(2078669..2079214) 1 NC_011094.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 2079214 cobU 439843002261 cobU Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenosylcobinamide kinase YP_002115051.1 2078669 R 439843 CDS YP_002115052.1 194736613 complement(2079211..2080731) 1 NC_011094.1 'catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation'; cobyric acid synthase 2080731 cobQ 439843002262 cobQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobyric acid synthase YP_002115052.1 2079211 R 439843 CDS YP_002115053.1 194737966 complement(2080728..2081543) 1 NC_011094.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 2081543 cbiO 439843002263 cbiO Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt transporter ATP-binding subunit YP_002115053.1 2080728 R 439843 CDS YP_002115054.1 194734568 complement(2081552..2082229) 1 NC_011094.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 2082229 cbiQ 439843002264 cbiQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt ABC transporter permease CbiQ YP_002115054.1 2081552 R 439843 CDS YP_002115055.1 194733948 complement(2082216..2082497) 1 NC_011094.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2082497 439843002265 SeSA_A2191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt transport protein CbiN YP_002115055.1 2082216 R 439843 CDS YP_002115056.1 194735785 complement(2082499..2083236) 1 NC_011094.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2083236 cbiM 439843002266 cbiM Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt transport protein CbiM YP_002115056.1 2082499 R 439843 CDS YP_002115057.1 194736005 complement(2083233..2083946) 1 NC_011094.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2083946 cobI 439843002267 cobI Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-2 C(20)-methyltransferase YP_002115057.1 2083233 R 439843 CDS YP_002115058.1 194737094 complement(2083943..2084737) 1 NC_011094.1 identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase 2084737 439843002268 SeSA_A2194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sirohydrochlorin cobaltochelatase YP_002115058.1 2083943 R 439843 CDS YP_002115059.1 194736499 complement(2084740..2085531) 1 NC_011094.1 'CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6'; cobalt-precorrin-6x reductase 2085531 cobK 439843002269 cobK Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-6x reductase YP_002115059.1 2084740 R 439843 CDS YP_002115060.1 194738094 complement(2085528..2086253) 1 NC_011094.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 2086253 cobJ 439843002270 cobJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. precorrin-3B C(17)-methyltransferase YP_002115060.1 2085528 R 439843 CDS YP_002115061.1 194737338 complement(2086253..2087308) 1 NC_011094.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2087308 439843002271 SeSA_A2197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalamin biosynthesis protein CbiG YP_002115061.1 2086253 R 439843 CDS YP_002115062.1 194736148 complement(2087289..2088062) 1 NC_011094.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 2088062 cobM 439843002272 cobM Salmonella enterica subsp. enterica serovar Schwarzengrund str. precorrin-4 C(11)-methyltransferase YP_002115062.1 2087289 R 439843 CDS YP_002115063.1 194736213 complement(2088046..2088624) 1 NC_011094.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2088624 439843002273 SeSA_A2199 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-6Y C(15)-methyltransferase YP_002115063.1 2088046 R 439843 CDS YP_002115064.1 194734243 complement(2088614..2089219) 1 NC_011094.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2089219 cbiE 439843002274 cbiE Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-6Y C(5)-methyltransferase YP_002115064.1 2088614 R 439843 CDS YP_002115065.1 194734874 complement(2089213..2090352) 1 NC_011094.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2090352 cbiD 439843002275 cbiD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-6A synthase YP_002115065.1 2089213 R 439843 CDS YP_002115066.1 194736816 complement(2090352..2090984) 1 NC_011094.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2090984 cbiC 439843002276 cbiC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt-precorrin-8X methylmutase YP_002115066.1 2090352 R 439843 CDS YP_002115067.1 194737481 complement(2090995..2091954) 1 NC_011094.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2091954 cbiB 439843002277 cbiB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalamin biosynthesis protein YP_002115067.1 2090995 R 439843 CDS YP_002115068.1 194736189 complement(2091951..2093330) 1 NC_011094.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2093330 cobB 439843002278 cobB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobyrinic acid a,c-diamide synthase YP_002115068.1 2091951 R 439843 CDS YP_002115069.1 194736794 complement(2093928..2094839) 1 NC_011094.1 identified by match to protein family HMM PF00165; regulatory protein PocR 2094839 439843002279 SeSA_A2206 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein PocR YP_002115069.1 2093928 R 439843 CDS YP_002115070.1 194735513 complement(2095056..2095850) 1 NC_011094.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator 2095850 439843002280 SeSA_A2207 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol diffusion facilitator YP_002115070.1 2095056 R 439843 CDS YP_002115071.1 194736143 2096375..2096659 1 NC_011094.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2096659 pduA 439843002281 pduA Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization protein PduA YP_002115071.1 2096375 D 439843 CDS YP_002115072.1 194735756 2096656..2097468 1 NC_011094.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2097468 439843002282 SeSA_A2209 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization protein PduB YP_002115072.1 2096656 D 439843 CDS YP_002115073.1 194735085 2097487..2099151 1 NC_011094.1 identified by match to protein family HMM PF02286; propanediol utilization dehydratase, large subunit 2099151 pduC 439843002283 pduC Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization dehydratase, large subunit YP_002115073.1 2097487 D 439843 CDS YP_002115074.1 194738381 2099162..2099836 1 NC_011094.1 identified by match to protein family HMM PF02288; propanediol dehydratase medium subunit 2099836 439843002284 SeSA_A2211 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol dehydratase medium subunit YP_002115074.1 2099162 D 439843 CDS YP_002115075.1 194736815 2099851..2100372 1 NC_011094.1 identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2100372 439843002285 SeSA_A2212 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol dehydratase small subunit YP_002115075.1 2099851 D 439843 CDS YP_002115076.1 194737124 2100579..2102411 1 NC_011094.1 identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2102411 439843002286 SeSA_A2213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol dehydratase reactivation factor large subunit YP_002115076.1 2100579 D 439843 CDS YP_002115077.1 194736504 2102401..2102751 1 NC_011094.1 PduH protein 2102751 439843002287 SeSA_A2214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PduH protein YP_002115077.1 2102401 D 439843 CDS YP_002115078.1 194735198 2102771..2103046 1 NC_011094.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2103046 439843002288 SeSA_A2215 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization protein PduJ YP_002115078.1 2102771 D 439843 CDS YP_002115079.1 194734824 2103071..2103532 1 NC_011094.1 identified by match to protein family HMM PF00936; polyhedral body protein 2103532 439843002289 SeSA_A2216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyhedral body protein YP_002115079.1 2103071 D 439843 CDS YP_002115080.1 194733967 2103532..2104164 1 NC_011094.1 identified by match to protein family HMM PF06130; propanediol utilization 2104164 439843002290 SeSA_A2217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization YP_002115080.1 2103532 D 439843 CDS YP_002115081.1 194738066 2104161..2104652 1 NC_011094.1 propanediol utilization 2104652 439843002291 SeSA_A2218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization YP_002115081.1 2104161 D 439843 CDS YP_002115082.1 194735913 2104656..2104931 1 NC_011094.1 identified by match to protein family HMM PF03319; propanediol utilization protein 2104931 439843002292 SeSA_A2219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization protein YP_002115082.1 2104656 D 439843 CDS YP_002115083.1 194735545 2104941..2105951 1 NC_011094.1 identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; PduO protein 2105951 439843002293 SeSA_A2220 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PduO protein YP_002115083.1 2104941 D 439843 CDS YP_002115084.1 194734366 2105948..2107342 1 NC_011094.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2107342 439843002294 SeSA_A2221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutE YP_002115084.1 2105948 D 439843 CDS YP_002115085.1 194738294 2107354..2108466 1 NC_011094.1 identified by match to protein family HMM PF00465; propanol dehydrogenase 2108466 439843002295 SeSA_A2222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanol dehydrogenase YP_002115085.1 2107354 D 439843 CDS YP_002115086.1 194737944 2108463..2109818 1 NC_011094.1 identified by match to protein family HMM PF01512; polyhedral body protein 2109818 439843002296 SeSA_A2223 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyhedral body protein YP_002115086.1 2108463 D 439843 CDS YP_002115087.1 194737295 2109821..2110375 1 NC_011094.1 identified by match to protein family HMM PF00936; polyhedral body protein 2110375 439843002297 SeSA_A2224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyhedral body protein YP_002115087.1 2109821 D 439843 CDS YP_002115088.1 194736182 2110402..2110725 1 NC_011094.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2110725 439843002298 SeSA_A2225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization protein PduU YP_002115088.1 2110402 D 439843 CDS YP_002115089.1 194735855 2110730..2111182 1 NC_011094.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2111182 eutP 439843002299 eutP Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein, EutP YP_002115089.1 2110730 D 439843 CDS YP_002115090.1 194735208 2111167..2112381 1 NC_011094.1 'involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol'; propionate kinase 2112381 ackA 439843002300 ackA Salmonella enterica subsp. enterica serovar Schwarzengrund str. propionate kinase YP_002115090.1 2111167 D 439843 CDS YP_002115091.1 194734860 2112439..2113341 1 NC_011094.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization 2113341 439843002301 SeSA_A2228 Salmonella enterica subsp. enterica serovar Schwarzengrund str. propanediol utilization YP_002115091.1 2112439 D 439843 CDS YP_002115092.1 194737526 complement(2113375..2113710) 1 NC_011094.1 identified by match to protein family HMM PF04363; hypothetical protein 2113710 439843002302 SeSA_A2229 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115092.1 2113375 R 439843 CDS YP_002115093.1 194737991 complement(2113955..2115013) 1 NC_011094.1 hypothetical protein 2115013 439843002303 SeSA_A2230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115093.1 2113955 R 439843 CDS YP_002115094.1 194734276 complement(2115132..2115599) 1 NC_011094.1 identified by match to protein family HMM PF06445; DNA gyrase inhibitor 2115599 439843002304 SeSA_A2231 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA gyrase inhibitor YP_002115094.1 2115132 R 439843 CDS YP_002115095.1 194734763 complement(2115750..2116922) 1 NC_011094.1 'removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 2116922 dacD 439843002305 dacD Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine carboxypeptidase YP_002115095.1 2115750 R 439843 CDS YP_002115096.1 194735263 complement(2117046..2117810) 1 NC_011094.1 identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit 2117810 439843002306 SeSA_A2233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiosulfate reductase cytochrome B subunit YP_002115096.1 2117046 R 439843 CDS YP_002115097.1 194736046 complement(2117807..2118385) 1 NC_011094.1 identified by match to protein family HMM PF00037; (4Fe-4S)-binding protein 2118385 439843002307 SeSA_A2234 Salmonella enterica subsp. enterica serovar Schwarzengrund str. (4Fe-4S)-binding protein YP_002115097.1 2117807 R 439843 CDS YP_002115098.1 194736523 complement(2118400..2120676) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase 2120676 439843002308 SeSA_A2235 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiosulfate reductase YP_002115098.1 2118400 R 439843 CDS YP_002115099.1 194737724 2121305..2123653 1 NC_011094.1 secreted effector protein 2123653 439843002309 SeSA_A2237 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002115099.1 2121305 D 439843 CDS YP_002115100.1 194737371 complement(2123857..2123979) 1 NC_011094.1 identified by glimmer; hypothetical protein 2123979 439843002310 SeSA_A2238 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115100.1 2123857 R 439843 CDS YP_002115101.1 194734383 complement(2124484..2124675) 1 NC_011094.1 identified by glimmer; hypothetical protein 2124675 439843002311 SeSA_A2239 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115101.1 2124484 R 439843 CDS YP_002115102.1 194736350 complement(2124784..2125218) 1 NC_011094.1 identified by glimmer; hypothetical protein 2125218 439843002312 SeSA_A2240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115102.1 2124784 R 439843 CDS YP_002115103.1 194736962 complement(2125574..2125717) 1 NC_011094.1 phage tail assembly protein 2125717 439843002313 SeSA_A2241 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage tail assembly protein YP_002115103.1 2125574 R 439843 CDS YP_002115104.1 194735555 complement(2125692..2126066) 1 NC_011094.1 hypothetical protein 2126066 439843002314 SeSA_A2242 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115104.1 2125692 R 439843 CDS YP_002115105.1 194735988 2126118..2127251 1 NC_011094.1 identified by match to protein family HMM PF01757; acetyltransferase family protein 2127251 439843002315 SeSA_A2243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase family protein YP_002115105.1 2126118 D 439843 CDS YP_002115106.1 194734321 complement(2127327..2127500) 1 NC_011094.1 phage gene 2127500 439843002316 SeSA_A2244 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage gene YP_002115106.1 2127327 R 439843 CDS YP_002115107.1 194734938 complement(2127490..2128065) 1 NC_011094.1 identified by match to protein family HMM PF02413; tail fiber assembly protein 2128065 439843002317 SeSA_A2245 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail fiber assembly protein YP_002115107.1 2127490 R 439843 CDS YP_002115108.1 194737320 complement(2128065..2129609) 1 NC_011094.1 tail protein 2129609 439843002318 SeSA_A2246 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002115108.1 2128065 R 439843 CDS YP_002115109.1 194737967 complement(2129596..2130183) 1 NC_011094.1 tail protein 2130183 439843002319 SeSA_A2247 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002115109.1 2129596 R 439843 CDS YP_002115110.1 194736351 complement(2130186..2131265) 1 NC_011094.1 identified by match to protein family HMM PF04865; tail protein 2131265 439843002320 SeSA_A2248 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002115110.1 2130186 R 439843 CDS YP_002115111.1 194734629 complement(2131258..2131671) 1 NC_011094.1 identified by match to protein family HMM PF07409; phage protein GP46 2131671 439843002321 SeSA_A2249 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage protein GP46 YP_002115111.1 2131258 R 439843 CDS YP_002115112.1 194735167 complement(2131676..2132209) 1 NC_011094.1 identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644; bacteriophage Mu Gp45 protein 2132209 439843002322 SeSA_A2250 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu Gp45 protein YP_002115112.1 2131676 R 439843 CDS YP_002115113.1 194735654 complement(2132209..2133267) 1 NC_011094.1 identified by match to protein family HMM PF06893; bacteriophage Mu P protein 2133267 439843002323 SeSA_A2251 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu P protein YP_002115113.1 2132209 R 439843 CDS YP_002115114.1 194737761 complement(2133264..2134604) 1 NC_011094.1 identified by match to protein family HMM PF07157; tail/DNA circulation protein 2134604 439843002324 SeSA_A2252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail/DNA circulation protein YP_002115114.1 2133264 R 439843 CDS YP_002115115.1 194738380 complement(2134638..2136566) 1 NC_011094.1 identified by match to protein family HMM TIGR01760; tail protein 2136566 439843002325 SeSA_A2253 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002115115.1 2134638 R 439843 CDS YP_002115116.1 194734038 complement(2136651..2136977) 1 NC_011094.1 hypothetical protein 2136977 439843002326 SeSA_A2254 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115116.1 2136651 R 439843 CDS YP_002115117.1 194734492 complement(2136974..2137330) 1 NC_011094.1 tail tube protein 2137330 439843002327 SeSA_A2255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail tube protein YP_002115117.1 2136974 R 439843 CDS YP_002115118.1 194735327 complement(2137330..2138826) 1 NC_011094.1 identified by match to protein family HMM PF06274; bacteriophage Mu tail sheath protein 2138826 439843002328 SeSA_A2256 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu tail sheath protein YP_002115118.1 2137330 R 439843 CDS YP_002115119.1 194735839 complement(2138816..2138980) 1 NC_011094.1 hypothetical protein 2138980 439843002329 SeSA_A2257 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115119.1 2138816 R 439843 CDS YP_002115120.1 194737144 complement(2138984..2139544) 1 NC_011094.1 hypothetical protein 2139544 439843002330 SeSA_A2258 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115120.1 2138984 R 439843 CDS YP_002115121.1 194737096 complement(2139541..2140053) 1 NC_011094.1 hypothetical protein 2140053 439843002331 SeSA_A2259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115121.1 2139541 R 439843 CDS YP_002115122.1 194737583 complement(2140025..2140429) 1 NC_011094.1 identified by match to protein family HMM TIGR01563; phage head-tail adaptor 2140429 439843002332 SeSA_A2260 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage head-tail adaptor YP_002115122.1 2140025 R 439843 CDS YP_002115123.1 194738312 complement(2140426..2140749) 1 NC_011094.1 hypothetical protein 2140749 439843002333 SeSA_A2261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115123.1 2140426 R 439843 CDS YP_002115124.1 194735611 complement(2140752..2140952) 1 NC_011094.1 hypothetical protein 2140952 439843002334 SeSA_A2262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115124.1 2140752 R 439843 CDS YP_002115125.1 194736054 complement(2141003..2142208) 1 NC_011094.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family protein 2142208 439843002335 SeSA_A2263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage major capsid protein, HK97 family protein YP_002115125.1 2141003 R 439843 CDS YP_002115126.1 194736329 complement(2142223..2142873) 1 NC_011094.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; phage prohead protease, HK97 family protein 2142873 439843002336 SeSA_A2264 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage prohead protease, HK97 family protein YP_002115126.1 2142223 R 439843 CDS YP_002115127.1 194736014 complement(2142851..2144092) 1 NC_011094.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family protein 2144092 439843002337 SeSA_A2265 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage portal protein, HK97 family protein YP_002115127.1 2142851 R 439843 CDS YP_002115128.1 194738012 complement(2144092..2144274) 1 NC_011094.1 hypothetical protein 2144274 439843002338 SeSA_A2266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115128.1 2144092 R 439843 CDS YP_002115129.1 194736431 complement(2144286..2146019) 1 NC_011094.1 identified by match to protein family HMM PF03354; phage terminase, large subunit 2146019 439843002339 SeSA_A2267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase, large subunit YP_002115129.1 2144286 R 439843 CDS YP_002115130.1 194734572 complement(2146016..2146510) 1 NC_011094.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase, small subunit, P27 family protein 2146510 439843002340 SeSA_A2268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase, small subunit, P27 family protein YP_002115130.1 2146016 R 439843 CDS YP_002115131.1 194734982 complement(2146636..2146986) 1 NC_011094.1 HnhC 2146986 439843002341 SeSA_A2269 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HnhC YP_002115131.1 2146636 R 439843 CDS YP_002115132.1 194737997 complement(2147037..2147369) 1 NC_011094.1 identified by glimmer; hypothetical protein 2147369 439843002342 SeSA_A2270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115132.1 2147037 R 439843 CDS YP_002115133.1 194738203 complement(2147832..2148050) 1 NC_011094.1 Rz lytic protein 2148050 439843002343 SeSA_A2271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Rz lytic protein YP_002115133.1 2147832 R 439843 CDS YP_002115134.1 194735852 complement(2148221..2148835) 1 NC_011094.1 identified by match to protein family HMM PF00182; lytic enzyme 2148835 439843002344 SeSA_A2272 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lytic enzyme YP_002115134.1 2148221 R 439843 CDS YP_002115135.1 194735189 complement(2148838..2149185) 1 NC_011094.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family protein 2149185 439843002345 SeSA_A2273 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage holin, lambda family protein YP_002115135.1 2148838 R 439843 CDS YP_002115136.1 194734588 complement(2149380..2150069) 1 NC_011094.1 identified by match to protein family HMM PF06323; gifsy-1 prophage RegQ 2150069 439843002346 SeSA_A2274 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage RegQ YP_002115136.1 2149380 R 439843 CDS YP_002115137.1 194733959 complement(2150203..2150820) 1 NC_011094.1 identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 2150820 439843002347 SeSA_A2275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Lambda NinG protein YP_002115137.1 2150203 R 439843 CDS YP_002115138.1 194737624 complement(2150817..2151023) 1 NC_011094.1 hypothetical protein 2151023 439843002348 SeSA_A2277 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115138.1 2150817 R 439843 CDS YP_002115139.1 194737136 complement(2151023..2151625) 1 NC_011094.1 identified by match to protein family HMM PF07105; gifsy-2 prophage protein 2151625 439843002349 SeSA_A2278 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-2 prophage protein YP_002115139.1 2151023 R 439843 CDS YP_002115140.1 194735235 complement(2152041..2152274) 1 NC_011094.1 identified by match to protein family HMM PF06183; hypothetical protein 2152274 439843002350 SeSA_A2279 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115140.1 2152041 R 439843 CDS YP_002115141.1 194734878 complement(2152566..2152718) 1 NC_011094.1 hypothetical protein 2152718 439843002351 SeSA_A2280 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115141.1 2152566 R 439843 CDS YP_008119778.1 513549396 complement(2152934..2153245) 1 NC_011094.1 hypothetical protein 2153245 439843002352 SeSA_A2281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119778.1 2152934 R 439843 CDS YP_002115142.1 194736533 complement(2153242..2153589) 1 NC_011094.1 identified by match to protein family HMM PF06163; hypothetical protein 2153589 439843002353 SeSA_A2282 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115142.1 2153242 R 439843 CDS YP_002115143.1 194738173 complement(2153600..2154349) 1 NC_011094.1 identified by match to protein family HMM PF01695; replication protein 2154349 439843002354 SeSA_A2283 Salmonella enterica subsp. enterica serovar Schwarzengrund str. replication protein YP_002115143.1 2153600 R 439843 CDS YP_002115144.1 194735893 complement(2154352..2155329) 1 NC_011094.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gifsy-1 prophage PrpO 2155329 439843002355 SeSA_A2284 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage PrpO YP_002115144.1 2154352 R 439843 CDS YP_002115145.2 449306307 complement(2155420..2155740) 1 NC_011094.1 gifsy-1 prophage cI protein 2155740 439843002356 SeSA_A2285 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage cI protein YP_002115145.2 2155420 R 439843 CDS YP_002115146.2 449306308 2156119..2156529 1 NC_011094.1 regulatory protein 2156529 439843002357 SeSA_A2286 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002115146.2 2156119 D 439843 CDS YP_002115147.1 194736102 2156723..2156839 1 NC_011094.1 hypothetical protein 2156839 439843002358 SeSA_A2287 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115147.1 2156723 D 439843 CDS YP_002115148.1 194737564 2156832..2156990 1 NC_011094.1 hypothetical protein 2156990 439843002359 SeSA_A2288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115148.1 2156832 D 439843 CDS YP_002115149.1 194737919 2157489..2160416 1 NC_011094.1 identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 2160416 439843002360 SeSA_A2289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage RecE YP_002115149.1 2157489 D 439843 CDS YP_002115150.1 194735223 2160427..2161536 1 NC_011094.1 identified by match to protein family HMM PF03837; gifsy-1 prophage protein 2161536 439843002361 SeSA_A2290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gifsy-1 prophage protein YP_002115150.1 2160427 D 439843 CDS YP_002115151.1 194734573 2161579..2161818 1 NC_011094.1 hypothetical protein 2161818 439843002362 SeSA_A2291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115151.1 2161579 D 439843 CDS YP_002115152.1 194734635 complement(2162182..2163363) 1 NC_011094.1 identified by match to protein family HMM PF00589; phage integrase family protein 2163363 439843002363 SeSA_A2292 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage integrase family protein YP_002115152.1 2162182 R 439843 CDS YP_002115153.1 194733944 2163539..2164969 1 NC_011094.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2164969 sbcB 439843002364 sbcB Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease I YP_002115153.1 2163539 D 439843 CDS YP_002115154.1 194735873 complement(2165105..2166463) 1 NC_011094.1 identified by match to protein family HMM PF00324; amino acid permease 2166463 yeeF 439843002365 yeeF Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid permease YP_002115154.1 2165105 R 439843 CDS YP_002115155.1 194735210 2166438..2166554 1 NC_011094.1 identified by glimmer; hypothetical protein 2166554 439843002366 SeSA_A2294 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115155.1 2166438 D 439843 CDS YP_002115156.1 194737070 complement(2166749..2167663) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2167663 439843002367 SeSA_A2296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002115156.1 2166749 R 439843 CDS YP_002115157.1 194736501 complement(2167709..2168533) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein 2168533 439843002368 SeSA_A2297 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115157.1 2167709 R 439843 CDS YP_002115158.1 194737860 2168892..2169791 1 NC_011094.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2169791 hisG 439843002369 hisG Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP phosphoribosyltransferase YP_002115158.1 2168892 D 439843 CDS YP_002115159.1 194734077 2169894..2171198 1 NC_011094.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2171198 hisD 439843002370 hisD Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidinol dehydrogenase YP_002115159.1 2169894 D 439843 CDS YP_002115160.1 194738143 2171195..2172274 1 NC_011094.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2172274 hisC 439843002371 hisC Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidinol-phosphate aminotransferase YP_002115160.1 2171195 D 439843 CDS YP_002115161.1 194737825 2172271..2173338 1 NC_011094.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2173338 hisB 439843002372 hisB Salmonella enterica subsp. enterica serovar Schwarzengrund str. imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002115161.1 2172271 D 439843 CDS YP_002115162.1 194738319 2173338..2173928 1 NC_011094.1 'with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide'; imidazole glycerol phosphate synthase subunit HisH 2173928 hisH 439843002373 hisH Salmonella enterica subsp. enterica serovar Schwarzengrund str. imidazole glycerol phosphate synthase subunit HisH YP_002115162.1 2173338 D 439843 CDS YP_002115163.1 194737880 2173928..2174665 1 NC_011094.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2174665 hisA 439843002374 hisA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002115163.1 2173928 D 439843 CDS YP_002115164.1 194735173 2174647..2175423 1 NC_011094.1 'catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase'; imidazole glycerol phosphate synthase subunit HisF 2175423 hisF 439843002375 hisF Salmonella enterica subsp. enterica serovar Schwarzengrund str. imidazole glycerol phosphate synthase subunit HisF YP_002115164.1 2174647 D 439843 CDS YP_002115165.1 194734563 2175417..2176028 1 NC_011094.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2176028 439843002376 SeSA_A2306 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_002115165.1 2175417 D 439843 CDS YP_002115166.1 194735784 complement(2176110..2177093) 1 NC_011094.1 identified by match to protein family HMM PF02706; chain length determinant protein 2177093 439843002377 SeSA_A2307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chain length determinant protein YP_002115166.1 2176110 R 439843 CDS YP_002115167.1 194735251 complement(2177236..2178402) 1 NC_011094.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 2178402 ugd 439843002378 ugd Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-glucose 6-dehydrogenase YP_002115167.1 2177236 R 439843 CDS YP_002115168.1 194737009 complement(2178639..2180045) 1 NC_011094.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2180045 gnd 439843002379 gnd Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphogluconate dehydrogenase YP_002115168.1 2178639 R 439843 CDS YP_002115169.1 194734817 complement(2180209..2181639) 1 NC_011094.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; UDP-phosphate galactose phosphotransferase 2181639 439843002380 SeSA_A2310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-phosphate galactose phosphotransferase YP_002115169.1 2180209 R 439843 CDS YP_002115170.1 194737984 complement(2181711..2183144) 1 NC_011094.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2183144 439843002381 SeSA_A2311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphomannomutase YP_002115170.1 2181711 R 439843 CDS YP_002115171.1 194736193 complement(2183131..2184570) 1 NC_011094.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2184570 439843002382 SeSA_A2312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannose-1-phosphate guanylyltransferase YP_002115171.1 2183131 R 439843 CDS YP_002115172.1 194736822 complement(2184571..2185515) 1 NC_011094.1 identified by match to protein family HMM PF00535; O antigen biosynthesis rhamnosyltransferase 2185515 439843002383 SeSA_A2313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O antigen biosynthesis rhamnosyltransferase YP_002115172.1 2184571 R 439843 CDS YP_002115173.1 194737305 complement(2185516..2186577) 1 NC_011094.1 identified by match to protein family HMM PF00534; protein RfbU 2186577 439843002384 SeSA_A2314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein RfbU YP_002115173.1 2185516 R 439843 CDS YP_002115174.1 194738027 complement(2186574..2187749) 1 NC_011094.1 Wzy 2187749 439843002385 SeSA_A2315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Wzy YP_002115174.1 2186574 R 439843 CDS YP_002115176.1 194737653 complement(2189161..2190162) 1 NC_011094.1 identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV 2190162 439843002386 SeSA_A2320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O antigen biosynthesis abequosyltransferase RfbV YP_002115176.1 2189161 R 439843 CDS YP_002115177.1 194738297 complement(2190167..2191447) 1 NC_011094.1 identified by match to protein family HMM PF01943; O-antigen transporter 2191447 439843002387 SeSA_A2321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-antigen transporter YP_002115177.1 2190167 R 439843 CDS YP_002115178.1 194734104 complement(2191541..2192440) 1 NC_011094.1 identified by match to protein family HMM PF01370; CDP-abequose synthase 2192440 439843002388 SeSA_A2322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CDP-abequose synthase YP_002115178.1 2191541 R 439843 CDS YP_002115179.1 194734744 complement(2192468..2193781) 1 NC_011094.1 identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH 2193781 439843002389 SeSA_A2323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide biosynthesis protein RfbH YP_002115179.1 2192468 R 439843 CDS YP_002115180.1 194737521 complement(2193808..2194887) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase 2194887 rfbG 439843002390 rfbG Salmonella enterica subsp. enterica serovar Schwarzengrund str. CDP-glucose 4,6-dehydratase YP_002115180.1 2193808 R 439843 CDS YP_002115181.1 194737866 complement(2194892..2195665) 1 NC_011094.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 2195665 rfbF 439843002391 rfbF Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-1-phosphate cytidylyltransferase YP_002115181.1 2194892 R 439843 CDS YP_002115182.1 194734228 complement(2195681..2196655) 1 NC_011094.1 'catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose'; CDP-6-deoxy-delta-3,4-glucoseen reductase 2196655 439843002392 SeSA_A2326 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CDP-6-deoxy-delta-3,4-glucoseen reductase YP_002115182.1 2195681 R 439843 CDS YP_002115183.1 194734639 complement(2196661..2197209) 1 NC_011094.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 2197209 rfbC 439843002393 rfbC Salmonella enterica subsp. enterica serovar Schwarzengrund str. dTDP-4-dehydrorhamnose 3,5-epimerase YP_002115183.1 2196661 R 439843 CDS YP_002115184.1 194736170 complement(2197213..2198097) 1 NC_011094.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 2198097 rfbA 439843002394 rfbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-1-phosphate thymidylyltransferase YP_002115184.1 2197213 R 439843 CDS YP_002115185.1 194734178 complement(2198139..2199038) 1 NC_011094.1 'with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose'; dTDP-4-dehydrorhamnose reductase 2199038 rfbD 439843002395 rfbD Salmonella enterica subsp. enterica serovar Schwarzengrund str. dTDP-4-dehydrorhamnose reductase YP_002115185.1 2198139 R 439843 CDS YP_002115186.1 194735082 complement(2199038..2200123) 1 NC_011094.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase 2200123 rfbB 439843002396 rfbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dTDP-glucose 4,6 dehydratase YP_002115186.1 2199038 R 439843 CDS YP_002115187.1 194736956 complement(2200500..2201393) 1 NC_011094.1 'together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose'; UTP-glucose-1-phosphate uridylyltransferase 2201393 galF 439843002397 galF Salmonella enterica subsp. enterica serovar Schwarzengrund str. UTP-glucose-1-phosphate uridylyltransferase YP_002115187.1 2200500 R 439843 CDS YP_002115188.1 194734129 complement(2201571..2202974) 1 NC_011094.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein 2202974 wcaM 439843002398 wcaM Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid biosynthesis protein YP_002115188.1 2201571 R 439843 CDS YP_002115189.1 194735345 complement(2202985..2204205) 1 NC_011094.1 identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL 2204205 439843002399 SeSA_A2333 Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid biosynthesis glycosyltransferase WcaL YP_002115189.1 2202985 R 439843 CDS YP_002115190.1 194734951 complement(2204202..2205482) 1 NC_011094.1 identified by match to protein family HMM PF04230; pyruvyl transferase 2205482 439843002400 SeSA_A2334 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvyl transferase YP_002115190.1 2204202 R 439843 CDS YP_002115191.1 194734330 complement(2205504..2207036) 1 NC_011094.1 identified by match to protein family HMM PF01943; colanic acid exporter 2207036 439843002401 SeSA_A2335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid exporter YP_002115191.1 2205504 R 439843 CDS YP_002115192.1 194738330 complement(2207115..2208509) 1 NC_011094.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier UDP phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 2208509 439843002402 SeSA_A2336 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-glucose lipid carrier transferase YP_002115192.1 2207115 R 439843 CDS YP_002115193.1 194737286 complement(2208563..2209933) 1 NC_011094.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2209933 cpsG 439843002403 cpsG Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphomannomutase YP_002115193.1 2208563 R 439843 CDS YP_002115194.1 194736911 complement(2210044..2211480) 1 NC_011094.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2211480 cpsB 439843002404 cpsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannose-1-phosphate guanylyltransferase YP_002115194.1 2210044 R 439843 CDS YP_002115195.1 194736458 complement(2211483..2212706) 1 NC_011094.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 2212706 wcaI 439843002405 wcaI Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002115195.1 2211483 R 439843 CDS YP_002115196.1 194736908 complement(2212703..2213176) 1 NC_011094.1 identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase 2213176 nudD 439843002406 nudD Salmonella enterica subsp. enterica serovar Schwarzengrund str. GDP-mannose mannosyl hydrolase YP_002115196.1 2212703 R 439843 CDS YP_002115197.1 194734429 complement(2213179..2214144) 1 NC_011094.1 identified by match to protein family HMM PF01370; GDP-L-fucose synthetase 2214144 fcl 439843002407 fcl Salmonella enterica subsp. enterica serovar Schwarzengrund str. GDP-L-fucose synthetase YP_002115197.1 2213179 R 439843 CDS YP_002115198.1 194738147 complement(2214147..2215268) 1 NC_011094.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 2215268 gmd 439843002408 gmd Salmonella enterica subsp. enterica serovar Schwarzengrund str. GDP-mannose 4,6-dehydratase YP_002115198.1 2214147 R 439843 CDS YP_002115199.1 194735057 complement(2215292..2215846) 1 NC_011094.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 2215846 439843002409 SeSA_A2343 Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid biosynthesis acetyltransferase WcaF YP_002115199.1 2215292 R 439843 CDS YP_002115200.1 194734994 complement(2215862..2216608) 1 NC_011094.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2216608 439843002410 SeSA_A2344 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002115200.1 2215862 R 439843 CDS YP_002115201.1 194736759 complement(2216621..2217835) 1 NC_011094.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein 2217835 wcaD 439843002411 wcaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid biosynthesis protein YP_002115201.1 2216621 R 439843 CDS YP_002115202.1 194736263 complement(2217810..2219027) 1 NC_011094.1 glycosyl transferase family protein 2219027 439843002412 SeSA_A2346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002115202.1 2217810 R 439843 CDS YP_002115203.1 194738005 complement(2219024..2219512) 1 NC_011094.1 'acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium'; colanic acid biosynthesis acetyltransferase WcaB 2219512 439843002413 SeSA_A2347 Salmonella enterica subsp. enterica serovar Schwarzengrund str. colanic acid biosynthesis acetyltransferase WcaB YP_002115203.1 2219024 R 439843 CDS YP_002115204.2 449306309 complement(2219515..2220357) 1 NC_011094.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2220357 439843002414 SeSA_A2348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002115204.2 2219515 R 439843 CDS YP_002115205.1 194736839 complement(2220444..2222603) 1 NC_011094.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2222603 439843002415 SeSA_A2349 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tyrosine kinase YP_002115205.1 2220444 R 439843 CDS YP_002115206.1 194737610 complement(2222600..2223049) 1 NC_011094.1 'Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis'; tyrosine phosphatase 2223049 wzb 439843002416 wzb Salmonella enterica subsp. enterica serovar Schwarzengrund str. tyrosine phosphatase YP_002115206.1 2222600 R 439843 CDS YP_002115207.2 449306310 complement(2223055..2224194) 1 NC_011094.1 identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 2224194 439843002417 SeSA_A2351 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide biosynthesis/export protein YP_002115207.2 2223055 R 439843 CDS YP_002115208.1 194734311 2224130..2224243 1 NC_011094.1 identified by glimmer; hypothetical protein 2224243 439843002418 SeSA_A2352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115208.1 2224130 D 439843 CDS YP_008119779.1 513549397 2224869..2226449 1 NC_011094.1 hypothetical protein 2226449 439843002419 SeSA_A2353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119779.1 2224869 D 439843 CDS YP_002115209.1 194735691 complement(2226535..2228391) 1 NC_011094.1 'YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs'; assembly protein 2228391 439843002420 SeSA_A2354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. assembly protein YP_002115209.1 2226535 R 439843 CDS YP_002115210.1 194736183 complement(2228430..2229011) 1 NC_011094.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2229011 dcd 439843002421 dcd Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxycytidine triphosphate deaminase YP_002115210.1 2228430 R 439843 CDS YP_002115211.1 194736768 complement(2229102..2229743) 1 NC_011094.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2229743 udk 439843002422 udk Salmonella enterica subsp. enterica serovar Schwarzengrund str. uridine kinase YP_002115211.1 2229102 R 439843 CDS YP_002115212.1 194737411 complement(2229819..2229989) 1 NC_011094.1 hypothetical protein 2229989 439843002423 SeSA_A2357 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115212.1 2229819 R 439843 CDS YP_002115213.1 194735930 2230068..2233064 1 NC_011094.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF05231; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; mase1 domain family protein 2233064 439843002424 SeSA_A2358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mase1 domain family protein YP_002115213.1 2230068 D 439843 CDS YP_002115214.1 194738030 complement(2233032..2233901) 1 NC_011094.1 'inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine'; 3-methyladenine DNA glycosylase 2233901 439843002425 SeSA_A2359 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-methyladenine DNA glycosylase YP_002115214.1 2233032 R 439843 CDS YP_002115215.1 194737588 2234035..2235387 1 NC_011094.1 chaperone 2235387 439843002426 SeSA_A2360 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone YP_002115215.1 2234035 D 439843 CDS YP_002115216.1 194734049 complement(2235624..2235740) 1 NC_011094.1 identified by glimmer; hypothetical protein 2235740 439843002428 SeSA_A2362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115216.1 2235624 R 439843 CDS YP_002115217.1 194734679 2235828..2237069 1 NC_011094.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtA 2237069 439843002429 SeSA_A2363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system subunit MdtA YP_002115217.1 2235828 D 439843 CDS YP_002115218.1 194735045 2237069..2240191 1 NC_011094.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtB 2240191 439843002430 SeSA_A2364 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system subunit MdtB YP_002115218.1 2237069 D 439843 CDS YP_002115219.1 194735845 2240192..2243272 1 NC_011094.1 'Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate'; multidrug efflux system subunit MdtC 2243272 mdtC 439843002431 mdtC Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system subunit MdtC YP_002115219.1 2240192 D 439843 CDS YP_002115220.1 194738025 2243269..2244681 1 NC_011094.1 identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2244681 439843002432 SeSA_A2366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system protein MdtE YP_002115220.1 2243269 D 439843 CDS YP_002115221.1 194737114 2244681..2246084 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2246084 439843002433 SeSA_A2367 Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal transduction histidine-protein kinase BaeS YP_002115221.1 2244681 D 439843 CDS YP_002115222.1 194737843 2246081..2246803 1 NC_011094.1 'response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport'; DNA-binding transcriptional regulator BaeR 2246803 439843002434 SeSA_A2368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator BaeR YP_002115222.1 2246081 D 439843 CDS YP_002115223.1 194738309 2247072..2248274 1 NC_011094.1 hypothetical protein 2248274 439843002435 SeSA_A2369 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115223.1 2247072 D 439843 CDS YP_002115224.1 194737273 2248274..2248990 1 NC_011094.1 hypothetical protein 2248990 439843002436 SeSA_A2370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115224.1 2248274 D 439843 CDS YP_002115225.1 194736760 2249001..2251112 1 NC_011094.1 hypothetical protein 2251112 439843002437 SeSA_A2371 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115225.1 2249001 D 439843 CDS YP_002115226.1 194735950 2251228..2252589 1 NC_011094.1 identified by match to protein family HMM PF01136; peptidase, U32 family protein 2252589 439843002438 SeSA_A2372 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase, U32 family protein YP_002115226.1 2251228 D 439843 CDS YP_002115227.1 194735411 complement(2253230..2253499) 1 NC_011094.1 Tir chaperone 2253499 439843002440 SeSA_A2374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Tir chaperone YP_002115227.1 2253230 R 439843 CDS YP_002115228.1 194737819 complement(2254462..2254578) 1 NC_011094.1 hypothetical protein 2254578 439843002441 SeSA_A2375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115228.1 2254462 R 439843 CDS YP_002115229.1 194734764 2254662..2255561 1 NC_011094.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2255561 439843002442 SeSA_A2376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid kinase YP_002115229.1 2254662 D 439843 CDS YP_008119780.1 513549398 complement(2255614..2256666) 1 NC_011094.1 fructose-bisphosphate aldolase 2256666 439843002443 SeSA_A2377 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-bisphosphate aldolase YP_008119780.1 2255614 R 439843 CDS YP_002115230.1 194738317 2256920..2258191 1 NC_011094.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2258191 yegT 439843002444 yegT Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside transporter YP_002115230.1 2256920 D 439843 CDS YP_002115231.1 194734400 2258188..2259192 1 NC_011094.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2259192 439843002445 SeSA_A2379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-ribosylglycohydrolase family protein YP_002115231.1 2258188 D 439843 CDS YP_002115232.1 194737496 2259189..2260154 1 NC_011094.1 identified by match to protein family HMM PF00294; kinase, PfkB family protein 2260154 439843002446 SeSA_A2380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. kinase, PfkB family protein YP_002115232.1 2259189 D 439843 CDS YP_002115233.1 194736175 complement(2260128..2260874) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; transcriptional regulator, GntR family protein 2260874 439843002447 SeSA_A2381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, GntR family protein YP_002115233.1 2260128 R 439843 CDS YP_002115234.1 194734564 complement(2260910..2261710) 1 NC_011094.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2261710 thiD 439843002448 thiD Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphomethylpyrimidine kinase YP_002115234.1 2260910 R 439843 CDS YP_002115235.1 194735759 complement(2261697..2262494) 1 NC_011094.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2262494 thiM 439843002449 thiM Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyethylthiazole kinase YP_002115235.1 2261697 R 439843 CDS YP_002115236.1 194737187 complement(2262593..2262778) 1 NC_011094.1 identified by glimmer; hypothetical protein 2262778 439843002450 SeSA_A2385 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115236.1 2262593 R 439843 CDS YP_002115237.1 194734724 2262904..2263218 1 NC_011094.1 hypothetical protein 2263218 439843002451 SeSA_A2386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115237.1 2262904 D 439843 CDS YP_002115238.1 194733942 complement(2263262..2264284) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 2264284 439843002452 SeSA_A2387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002115238.1 2263262 R 439843 CDS YP_002115239.1 194738189 complement(2264300..2266786) 1 NC_011094.1 identified by match to protein family HMM PF00577; fimbrial usher protein 2266786 439843002453 SeSA_A2388 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial usher protein YP_002115239.1 2264300 R 439843 CDS YP_002115240.1 194737456 complement(2266815..2267495) 1 NC_011094.1 identified by match to protein family HMM PF00345; pilus assembly chaperone 2267495 439843002454 SeSA_A2389 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pilus assembly chaperone YP_002115240.1 2266815 R 439843 CDS YP_002115241.1 194737203 complement(2267557..2268090) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 2268090 439843002455 SeSA_A2390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002115241.1 2267557 R 439843 CDS YP_002115242.1 194736730 complement(2268371..2268652) 1 NC_011094.1 hypothetical protein 2268652 439843002456 SeSA_A2391 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115242.1 2268371 R 439843 CDS YP_002115243.1 194735155 complement(2268930..2270039) 1 NC_011094.1 ATPase 2270039 439843002457 SeSA_A2392 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATPase YP_002115243.1 2268930 R 439843 CDS YP_002115244.1 194737671 2270204..2272237 1 NC_011094.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2272237 metG 439843002458 metG Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionyl-tRNA synthetase YP_002115244.1 2270204 D 439843 CDS YP_002115245.1 194735298 2272479..2272937 1 NC_011094.1 identified by match to protein family HMM PF06998; hypothetical protein 2272937 439843002459 SeSA_A2394 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115245.1 2272479 D 439843 CDS YP_002115246.1 194735841 2273109..2273639 1 NC_011094.1 identified by match to protein family HMM PF06998; hypothetical protein 2273639 439843002460 SeSA_A2395 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115246.1 2273109 D 439843 CDS YP_002115247.1 194734058 complement(2273696..2274163) 1 NC_011094.1 identified by match to protein family HMM PF07308; hypothetical protein 2274163 439843002461 SeSA_A2396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115247.1 2273696 R 439843 CDS YP_002115248.1 194734544 complement(2274210..2274929) 1 NC_011094.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 2274929 439843002462 SeSA_A2397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. two-component response-regulatory protein YehT YP_002115248.1 2274210 R 439843 CDS YP_002115249.1 194737317 complement(2274926..2276611) 1 NC_011094.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 2276611 439843002463 SeSA_A2398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor histidine kinase YP_002115249.1 2274926 R 439843 CDS YP_002115250.1 194738337 2276834..2277565 1 NC_011094.1 identified by match to protein family HMM PF00376; transcriptional regulator, MerR family protein 2277565 439843002464 SeSA_A2399 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, MerR family protein YP_002115250.1 2276834 D 439843 CDS YP_002115251.1 194737797 complement(2277713..2278444) 1 NC_011094.1 identified by match to protein family HMM PF00528; ABC transporter permease 2278444 439843002465 SeSA_A2400 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002115251.1 2277713 R 439843 CDS YP_002115252.1 194738287 complement(2278428..2279375) 1 NC_011094.1 identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA 2279375 439843002466 SeSA_A2401 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine betaine/carnitine/choline transport ATP-binding protein opuCA YP_002115252.1 2278428 R 439843 CDS YP_002115253.1 194736570 complement(2279368..2280537) 1 NC_011094.1 identified by match to protein family HMM PF00528; ABC transporter permease 2280537 439843002467 SeSA_A2402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002115253.1 2279368 R 439843 CDS YP_002115254.1 194738120 complement(2280541..2281458) 1 NC_011094.1 identified by match to protein family HMM PF04069; amine ABC transporter substrate-binding protein 2281458 439843002468 SeSA_A2403 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amine ABC transporter substrate-binding protein YP_002115254.1 2280541 R 439843 CDS YP_002115255.1 194736410 complement(2281639..2283906) 1 NC_011094.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; beta-glucosidase 2283906 439843002469 SeSA_A2404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-glucosidase YP_002115255.1 2281639 R 439843 CDS YP_002115256.1 194735624 2284203..2285933 1 NC_011094.1 'component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent'; D-lactate dehydrogenase 2285933 439843002470 SeSA_A2405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-lactate dehydrogenase YP_002115256.1 2284203 D 439843 CDS YP_002115257.1 194736053 complement(2285992..2286900) 1 NC_011094.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2286900 pbpG 439843002471 pbpG Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine endopeptidase YP_002115257.1 2285992 R 439843 CDS YP_002115258.1 194735564 complement(2287105..2287692) 1 NC_011094.1 identified by match to protein family HMM PF06930; hypothetical protein 2287692 439843002472 SeSA_A2407 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115258.1 2287105 R 439843 CDS YP_002115259.1 194734761 2287851..2288420 1 NC_011094.1 identified by match to protein family HMM PF09335; hypothetical protein 2288420 439843002473 SeSA_A2408 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115259.1 2287851 D 439843 CDS YP_002115260.1 194734285 complement(2288468..2289250) 1 NC_011094.1 identified by match to protein family HMM PF00106; acetoin dehydrogenase 2289250 439843002474 SeSA_A2409 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetoin dehydrogenase YP_002115260.1 2288468 R 439843 CDS YP_002115261.1 194738021 complement(2289295..2290731) 1 NC_011094.1 'may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride'; multidrug resistance outer membrane protein MdtQ 2290731 439843002475 SeSA_A2410 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance outer membrane protein MdtQ YP_002115261.1 2289295 R 439843 CDS YP_002115262.1 194737549 complement(2290782..2290940) 1 NC_011094.1 hypothetical protein 2290940 439843002476 SeSA_A2412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115262.1 2290782 R 439843 CDS YP_002115263.1 194735775 2290922..2291119 1 NC_011094.1 hypothetical protein 2291119 439843002477 SeSA_A2411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115263.1 2290922 D 439843 CDS YP_002115264.1 194735562 complement(2291190..2292128) 1 NC_011094.1 identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C 2292128 439843002478 SeSA_A2413 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-dihydrouridine synthase C YP_002115264.1 2291190 R 439843 CDS YP_002115265.1 194735226 complement(2292237..2293430) 1 NC_011094.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2293430 439843002479 SeSA_A2414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. salicylate hydroxylase YP_002115265.1 2292237 R 439843 CDS YP_002115266.1 194735529 complement(2293445..2294089) 1 NC_011094.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase 2294089 maiA 439843002480 maiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. maleylacetoacetate isomerase YP_002115266.1 2293445 R 439843 CDS YP_002115267.1 194736949 complement(2294098..2294799) 1 NC_011094.1 identified by match to protein family HMM PF01557; FAA-hydrolase-family protein 2294799 439843002481 SeSA_A2416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. FAA-hydrolase-family protein YP_002115267.1 2294098 R 439843 CDS YP_002115268.1 194736424 complement(2294815..2295852) 1 NC_011094.1 identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase 2295852 gtdA 439843002482 gtdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. gentisate 1,2-dioxygenase YP_002115268.1 2294815 R 439843 CDS YP_002115269.1 194737859 complement(2295864..2297222) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter 2297222 439843002483 SeSA_A2418 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybenzoate transporter YP_002115269.1 2295864 R 439843 CDS YP_008119781.1 513549399 2297348..2298256 1 NC_011094.1 LysR family transcriptional regulator 2298256 439843002484 SeSA_A2419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR family transcriptional regulator YP_008119781.1 2297348 D 439843 CDS YP_002115270.1 194734474 2298388..2298786 1 NC_011094.1 identified by match to protein family HMM PF03788; hypothetical protein 2298786 439843002485 SeSA_A2420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115270.1 2298388 D 439843 CDS YP_002115271.1 194736083 2298783..2299478 1 NC_011094.1 identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2299478 439843002486 SeSA_A2421 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115271.1 2298783 D 439843 CDS YP_002115272.1 194735797 2299632..2300516 1 NC_011094.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2300516 cdd 439843002487 cdd Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytidine deaminase YP_002115272.1 2299632 D 439843 CDS YP_002115273.1 194737817 2300693..2301412 1 NC_011094.1 identified by match to protein family HMM PF02698; hypothetical protein 2301412 439843002488 SeSA_A2423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115273.1 2300693 D 439843 CDS YP_002115274.1 194737953 2301415..2301654 1 NC_011094.1 hypothetical protein 2301654 439843002489 SeSA_A2424 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115274.1 2301415 D 439843 CDS YP_002115275.1 194736184 2301859..2303100 1 NC_011094.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2303100 439843002490 SeSA_A2425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YP_002115275.1 2301859 D 439843 CDS YP_002115276.1 194736993 2303094..2304329 1 NC_011094.1 'catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines'; dihydropyrimidine dehydrogenase 2304329 439843002491 SeSA_A2426 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydropyrimidine dehydrogenase YP_002115276.1 2303094 D 439843 CDS YP_002115277.1 194735096 complement(2304404..2305414) 1 NC_011094.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 2305414 mglC 439843002492 mglC Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-methylgalactoside transporter inner membrane protein YP_002115277.1 2304404 R 439843 CDS YP_002115278.1 194735472 complement(2305430..2306950) 1 NC_011094.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2306950 439843002493 SeSA_A2428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactose/methyl galaxtoside transporter ATP-binding protein YP_002115278.1 2305430 R 439843 CDS YP_002115279.1 194734100 complement(2307084..2308082) 1 NC_011094.1 identified by match to protein family HMM PF00532; D-galactose-binding periplasmic protein 2308082 439843002494 SeSA_A2429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-galactose-binding periplasmic protein YP_002115279.1 2307084 R 439843 CDS YP_002115280.1 194734346 complement(2308581..2309603) 1 NC_011094.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2309603 439843002495 SeSA_A2430 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator GalS YP_002115280.1 2308581 R 439843 CDS YP_002115281.1 194734996 complement(2309753..2310895) 1 NC_011094.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein 2310895 439843002496 SeSA_A2431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115281.1 2309753 R 439843 CDS YP_002115282.1 194737336 complement(2310910..2311578) 1 NC_011094.1 'involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer'; GTP cyclohydrolase I 2311578 folE 439843002497 folE Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP cyclohydrolase I YP_002115282.1 2310910 R 439843 CDS YP_002115283.1 194738211 2311908..2312765 1 NC_011094.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2312765 fghA 439843002498 fghA Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-formylglutathione hydrolase YP_002115283.1 2311908 D 439843 CDS YP_002115284.1 194736688 complement(2312754..2313188) 1 NC_011094.1 identified by match to protein family HMM PF01381; transcriptional regulator 2313188 439843002499 SeSA_A2434 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002115284.1 2312754 R 439843 CDS YP_002115285.1 194737592 complement(2313148..2314515) 1 NC_011094.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 2314515 439843002500 SeSA_A2435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-serine ammonia-lyase YP_002115285.1 2313148 R 439843 CDS YP_002115286.1 194734716 2314732..2315619 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2315619 serB 439843002501 serB Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoserine phosphatase SerB YP_002115286.1 2314732 D 439843 CDS YP_002115287.1 194734088 2315652..2316974 1 NC_011094.1 identified by match to protein family HMM PF07690; regulatory protein UhpC 2316974 439843002502 SeSA_A2437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein UhpC YP_002115287.1 2315652 D 439843 CDS YP_002115288.1 194735726 complement(2317018..2318970) 1 NC_011094.1 'Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein'; colicin I receptor 2318970 439843002503 SeSA_A2438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. colicin I receptor YP_002115288.1 2317018 R 439843 CDS YP_002115289.1 194735104 complement(2319354..2320823) 1 NC_011094.1 identified by match to protein family HMM PF00324; lysine transporter 2320823 439843002504 SeSA_A2439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine transporter YP_002115289.1 2319354 R 439843 CDS YP_002115290.1 194735526 complement(2321013..2321876) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 2321876 439843002505 SeSA_A2440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002115290.1 2321013 R 439843 CDS YP_002115291.1 194736830 2321997..2323046 1 NC_011094.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2323046 439843002506 SeSA_A2441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115291.1 2321997 D 439843 CDS YP_002115292.1 194736559 2323125..2323982 1 NC_011094.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2323982 439843002507 SeSA_A2442 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease IV YP_002115292.1 2323125 D 439843 CDS YP_002115293.1 194738383 complement(2324047..2325735) 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC 2325735 439843002508 SeSA_A2443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system fructose-specific transporter subunit IIBC YP_002115293.1 2324047 R 439843 CDS YP_002115294.1 194734375 complement(2325752..2326690) 1 NC_011094.1 'converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers'; 1-phosphofructokinase 2326690 fruK 439843002509 fruK Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1-phosphofructokinase YP_002115294.1 2325752 R 439843 CDS YP_002115295.1 194734849 complement(2326690..2327820) 1 NC_011094.1 'phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr'; PTS system fructose-specific transporter subunit IIA/HPr protein 2327820 fruB 439843002510 fruB Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system fructose-specific transporter subunit IIA/HPr protein YP_002115295.1 2326690 R 439843 CDS YP_002115296.1 194735444 2327841..2327972 1 NC_011094.1 identified by glimmer; hypothetical protein 2327972 439843002511 SeSA_A2446 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115296.1 2327841 D 439843 CDS YP_002115297.1 194735915 2328189..2329370 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2329370 439843002512 SeSA_A2447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar efflux transporter B YP_002115297.1 2328189 D 439843 CDS YP_002115298.1 194736948 complement(2329435..2330100) 1 NC_011094.1 hypothetical protein 2330100 439843002513 SeSA_A2448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115298.1 2329435 R 439843 CDS YP_002115299.1 194737441 complement(2330102..2330224) 1 NC_011094.1 hypothetical protein 2330224 439843002514 SeSA_A2449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115299.1 2330102 R 439843 CDS YP_002115300.1 194735184 complement(2330612..2330866) 1 NC_011094.1 hypothetical protein 2330866 439843002515 SeSA_A2450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115300.1 2330612 R 439843 CDS YP_002115301.1 194734607 2331191..2331763 1 NC_011094.1 'Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein'; elongation factor P 2331763 439843002516 SeSA_A2451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor P YP_002115301.1 2331191 D 439843 CDS YP_002115302.1 194736397 2331948..2332961 1 NC_011094.1 identified by match to protein family HMM PF02492; cobalamin synthesis protein, P47K 2332961 439843002517 SeSA_A2452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalamin synthesis protein, P47K YP_002115302.1 2331948 D 439843 CDS YP_002115303.1 194735858 2332964..2333710 1 NC_011094.1 identified by match to protein family HMM PF01569; hypothetical protein 2333710 439843002518 SeSA_A2453 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115303.1 2332964 D 439843 CDS YP_002115304.1 194737771 2334124..2334696 1 NC_011094.1 'by similarity, Spr seems to have peptidase activity; involved in thermoresistance'; outer membrane lipoprotein 2334696 spr 439843002519 spr Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002115304.1 2334124 D 439843 CDS YP_002115305.1 194734518 2335022..2336578 1 NC_011094.1 identified by match to protein family HMM PF00563; hypothetical protein 2336578 439843002520 SeSA_A2455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115305.1 2335022 D 439843 CDS YP_002115306.1 194735752 2336685..2338490 1 NC_011094.1 identified by match to protein family HMM PF00496; extracellular solute-binding protein 2338490 439843002521 SeSA_A2456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. extracellular solute-binding protein YP_002115306.1 2336685 D 439843 CDS YP_002115307.1 194737192 2338500..2339594 1 NC_011094.1 identified by match to protein family HMM PF00528; ABC transporter permease 2339594 439843002522 SeSA_A2457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002115307.1 2338500 D 439843 CDS YP_002115308.1 194734727 2339594..2340619 1 NC_011094.1 identified by match to protein family HMM PF00528; ABC transporter permease 2340619 439843002523 SeSA_A2458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002115308.1 2339594 D 439843 CDS YP_002115309.1 194733930 2340621..2342210 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2342210 439843002524 SeSA_A2459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione import ATP-binding protein GsiA YP_002115309.1 2340621 D 439843 CDS YP_002115310.1 194738183 complement(2342214..2342558) 1 NC_011094.1 hypothetical protein 2342558 439843002525 SeSA_A2460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115310.1 2342214 R 439843 CDS YP_002115311.1 194737450 complement(2342949..2344139) 1 NC_011094.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2344139 bcr 439843002526 bcr Salmonella enterica subsp. enterica serovar Schwarzengrund str. bicyclomycin/multidrug efflux system protein YP_002115311.1 2342949 R 439843 CDS YP_002115312.1 194737206 complement(2344167..2344862) 1 NC_011094.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2344862 rsuA 439843002527 rsuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S rRNA pseudouridylate synthase A YP_002115312.1 2344167 R 439843 CDS YP_002115313.1 194737347 2345014..2346774 1 NC_011094.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2346774 439843002528 SeSA_A2463 Salmonella enterica subsp. enterica serovar Schwarzengrund str. helicase YP_002115313.1 2345014 D 439843 CDS YP_002115314.1 194735960 2346899..2347183 1 NC_011094.1 'the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response'; 50S ribosomal protein L25 2347183 rplY 439843002529 rplY Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L25 YP_002115314.1 2346899 D 439843 CDS YP_002115315.1 194734307 complement(2347304..2348311) 1 NC_011094.1 identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA 2348311 ndpA 439843002530 ndpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoid-associated protein NdpA YP_002115315.1 2347304 R 439843 CDS YP_002115316.1 194738395 2348491..2348718 1 NC_011094.1 identified by match to protein family HMM PF07208; hypothetical protein 2348718 439843002531 SeSA_A2466 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115316.1 2348491 D 439843 CDS YP_002115317.1 194736250 2348750..2350510 1 NC_011094.1 identified by match to protein family HMM PF00884; hypothetical protein 2350510 439843002532 SeSA_A2467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115317.1 2348750 D 439843 CDS YP_002115318.1 194734863 2350702..2350905 1 NC_011094.1 MsgA-like virulence protein 2350905 439843002534 SeSA_A2469 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MsgA-like virulence protein YP_002115318.1 2350702 D 439843 CDS YP_002115319.1 194737704 complement(2351098..2351655) 1 NC_011094.1 identified by match to protein family HMM PF09411; outer membrane protein 2351655 439843002535 SeSA_A2470 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002115319.1 2351098 R 439843 CDS YP_002115320.1 194735390 complement(2351652..2351849) 1 NC_011094.1 identified by glimmer; hypothetical protein 2351849 439843002536 SeSA_A2471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115320.1 2351652 R 439843 CDS YP_002115321.1 194736026 2352480..2353127 1 NC_011094.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2353127 439843002537 SeSA_A2472 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator NarP YP_002115321.1 2352480 D 439843 CDS YP_002115322.1 194736981 complement(2353171..2354214) 1 NC_011094.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 2354214 439843002538 SeSA_A2473 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein H2 YP_002115322.1 2353171 R 439843 CDS YP_002115323.1 194737651 complement(2354211..2354768) 1 NC_011094.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE 2354768 439843002539 SeSA_A2474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol:disulfide interChange protein DsbE YP_002115323.1 2354211 R 439843 CDS YP_002115324.1 194737150 complement(2354765..2356696) 1 NC_011094.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 2356696 ccmF 439843002540 ccmF Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein CcmF YP_002115324.1 2354765 R 439843 CDS YP_002115325.1 194736683 complement(2356693..2357172) 1 NC_011094.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2357172 439843002541 SeSA_A2476 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein CcmE YP_002115325.1 2356693 R 439843 CDS YP_002115326.1 194734401 complement(2357169..2357342) 1 NC_011094.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD 2357342 ccmD 439843002542 ccmD Salmonella enterica subsp. enterica serovar Schwarzengrund str. heme exporter protein CcmD YP_002115326.1 2357169 R 439843 CDS YP_002115327.1 194735071 complement(2357378..2358124) 1 NC_011094.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC transporter protein 2358124 439843002543 SeSA_A2478 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter protein YP_002115327.1 2357378 R 439843 CDS YP_002115328.1 194734547 complement(2358167..2358823) 1 NC_011094.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 2358823 ccmB 439843002544 ccmB Salmonella enterica subsp. enterica serovar Schwarzengrund str. heme exporter protein CcmB YP_002115328.1 2358167 R 439843 CDS YP_002115329.1 194734093 complement(2358823..2359446) 1 NC_011094.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2359446 ccmA 439843002545 ccmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c biogenesis protein CcmA YP_002115329.1 2358823 R 439843 CDS YP_002115330.1 194735056 complement(2359461..2360063) 1 NC_011094.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2360063 napC 439843002546 napC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type protein NapC YP_002115330.1 2359461 R 439843 CDS YP_002115331.1 194736854 complement(2360073..2360522) 1 NC_011094.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2360522 napB 439843002547 napB Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate reductase cytochrome c-type subunit YP_002115331.1 2360073 R 439843 CDS YP_008119782.1 513549400 complement(2360638..2361507) 1 NC_011094.1 quinol dehydrogenase membrane subunit 2361507 439843002548 SeSA_A2483 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinol dehydrogenase membrane subunit YP_008119782.1 2360638 R 439843 CDS YP_002115332.1 194734734 complement(2361494..2362189) 1 NC_011094.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2362189 napG 439843002549 napG Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinol dehydrogenase periplasmic component YP_002115332.1 2361494 R 439843 CDS YP_002115333.1 194736369 complement(2362196..2364682) 1 NC_011094.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2364682 napA 439843002550 napA Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase catalytic subunit YP_002115333.1 2362196 R 439843 CDS YP_008119783.1 513549401 complement(2364679..2364942) 1 NC_011094.1 nitrate reductase assembly protein 2364942 napD 439843002551 napD Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate reductase assembly protein YP_008119783.1 2364679 R 439843 CDS YP_002115334.1 194736777 complement(2364932..2365423) 1 NC_011094.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2365423 napF 439843002552 napF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin-type protein YP_002115334.1 2364932 R 439843 CDS YP_002115335.1 194736714 2365825..2366331 1 NC_011094.1 'serine protease inhibitor, inhibits trypsin and other proteases'; ecotin 2366331 439843002553 SeSA_A2488 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ecotin YP_002115335.1 2365825 D 439843 CDS YP_002115336.1 194736104 complement(2366540..2368183) 1 NC_011094.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 2368183 439843002554 SeSA_A2489 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug transporter membrane protein/ATP-binding component YP_002115336.1 2366540 R 439843 CDS YP_002115337.1 194735473 complement(2368259..2368909) 1 NC_011094.1 identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB 2368909 439843002555 SeSA_A2490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-ketoglutarate-dependent dioxygenase AlkB YP_002115337.1 2368259 R 439843 CDS YP_002115338.1 194735664 complement(2368912..2369973) 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada 2369973 439843002556 SeSA_A2491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein ada YP_002115338.1 2368912 R 439843 CDS YP_002115339.1 194735324 complement(2370054..2371106) 1 NC_011094.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2371106 439843002557 SeSA_A2492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine biosynthesis lipoprotein ApbE YP_002115339.1 2370054 R 439843 CDS YP_002115340.1 194736918 complement(2371221..2372357) 1 NC_011094.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2372357 439843002558 SeSA_A2493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane porin protein C YP_002115340.1 2371221 R 439843 CDS YP_002115341.1 194735763 2373086..2375755 1 NC_011094.1 identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2375755 439843002560 SeSA_A2495 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_002115341.1 2373086 D 439843 CDS YP_002115342.1 194733999 2375772..2376422 1 NC_011094.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2376422 rcsB 439843002561 rcsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator RcsB YP_002115342.1 2375772 D 439843 CDS YP_002115343.1 194734600 complement(2376525..2379371) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09456; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2379371 439843002562 SeSA_A2497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_002115343.1 2376525 R 439843 CDS YP_002115344.1 194735318 complement(2379489..2382125) 1 NC_011094.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2382125 gyrA 439843002563 gyrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA gyrase subunit A YP_002115344.1 2379489 R 439843 CDS YP_002115345.1 194735769 complement(2382535..2383737) 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase 2383737 439843002564 SeSA_A2499 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mandelate racemase YP_002115345.1 2382535 R 439843 CDS YP_002115346.1 194734011 complement(2383752..2385077) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease 2385077 439843002565 SeSA_A2500 Salmonella enterica subsp. enterica serovar Schwarzengrund str. permease YP_002115346.1 2383752 R 439843 CDS YP_002115347.1 194737399 2386095..2386823 1 NC_011094.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2386823 ubiG 439843002568 ubiG Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-demethylubiquinone-9 3-methyltransferase YP_002115347.1 2386095 D 439843 CDS YP_002115348.1 194736487 2387122..2389464 1 NC_011094.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2389464 nrdA 439843002569 nrdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleotide-diphosphate reductase subunit alpha YP_002115348.1 2387122 D 439843 CDS YP_002115349.1 194735273 2389577..2390707 1 NC_011094.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2390707 nrdB 439843002570 nrdB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleotide-diphosphate reductase subunit beta YP_002115349.1 2389577 D 439843 CDS YP_002115350.1 194737672 2390707..2390961 1 NC_011094.1 'plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases'; 2Fe-2S ferredoxin 2390961 439843002571 SeSA_A2506 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2Fe-2S ferredoxin YP_002115350.1 2390707 D 439843 CDS YP_002115351.1 194734504 2392313..2393191 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2393191 439843002573 SeSA_A2509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002115351.1 2392313 D 439843 CDS YP_002115352.1 194737051 complement(2393307..2394377) 1 NC_011094.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2394377 glpQ 439843002574 glpQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerophosphodiester phosphodiesterase YP_002115352.1 2393307 R 439843 CDS YP_002115353.1 194737838 complement(2394382..2395740) 1 NC_011094.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2395740 glpT 439843002575 glpT Salmonella enterica subsp. enterica serovar Schwarzengrund str. sn-glycerol-3-phosphate transporter YP_002115353.1 2394382 R 439843 CDS YP_002115354.1 194735790 2396013..2397641 1 NC_011094.1 'anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor'; sn-glycerol-3-phosphate dehydrogenase subunit A 2397641 glpA 439843002576 glpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. sn-glycerol-3-phosphate dehydrogenase subunit A YP_002115354.1 2396013 D 439843 CDS YP_002115355.1 194736537 2397631..2398890 1 NC_011094.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2398890 glpB 439843002577 glpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_002115355.1 2397631 D 439843 CDS YP_002115356.1 194734477 2398887..2400077 1 NC_011094.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2400077 glpC 439843002578 glpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. sn-glycerol-3-phosphate dehydrogenase subunit C YP_002115356.1 2398887 D 439843 CDS YP_002115357.1 194737909 2400503..2401525 1 NC_011094.1 'similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system'; deubiquitinase 2401525 439843002579 SeSA_A2515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. deubiquitinase YP_002115357.1 2400503 D 439843 CDS YP_002115358.1 194736303 complement(2401759..2401935) 1 NC_011094.1 competence damage-inducible protein A 2401935 439843002580 SeSA_A2516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. competence damage-inducible protein A YP_002115358.1 2401759 R 439843 CDS YP_002115359.1 194736883 complement(2401941..2402744) 1 NC_011094.1 identified by match to protein family HMM PF03328; aldolase 2402744 439843002581 SeSA_A2517 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldolase YP_002115359.1 2401941 R 439843 CDS YP_002115360.1 194735224 complement(2402770..2404059) 1 NC_011094.1 identified by match to protein family HMM PF07690; transporter major facilitator family protein 2404059 439843002582 SeSA_A2518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter major facilitator family protein YP_002115360.1 2402770 R 439843 CDS YP_002115361.1 194736010 complement(2404115..2405320) 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 2405320 439843002583 SeSA_A2519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mandelate racemase/muconate lactonizing protein YP_002115361.1 2404115 R 439843 CDS YP_002115362.1 194734370 complement(2405334..2406116) 1 NC_011094.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator 2406116 439843002584 SeSA_A2520 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002115362.1 2405334 R 439843 CDS YP_002115363.1 194734899 complement(2406366..2407562) 1 NC_011094.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A 2407562 439843002585 SeSA_A2521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. competence damage-inducible protein A YP_002115363.1 2406366 R 439843 CDS YP_002115364.1 194735520 complement(2407677..2408351) 1 NC_011094.1 identified by match to protein family HMM PF07437; hypothetical protein 2408351 439843002586 SeSA_A2522 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115364.1 2407677 R 439843 CDS YP_002115365.1 194735920 2408498..2408923 1 NC_011094.1 identified by match to protein family HMM PF00293; hydrolase, nudix family protein 2408923 439843002587 SeSA_A2523 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase, nudix family protein YP_002115365.1 2408498 D 439843 CDS YP_002115366.1 194735663 complement(2408969..2409574) 1 NC_011094.1 identified by match to protein family HMM PF00300; Ais protein 2409574 439843002588 SeSA_A2524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Ais protein YP_002115366.1 2408969 R 439843 CDS YP_002115367.1 194737509 2409855..2411012 1 NC_011094.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2411012 439843002589 SeSA_A2525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_002115367.1 2409855 D 439843 CDS YP_002115368.1 194735356 2411015..2411998 1 NC_011094.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to UDP phosphate; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2411998 439843002590 SeSA_A2526 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002115368.1 2411015 D 439843 CDS YP_002115369.1 194736015 2411995..2413977 1 NC_011094.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2413977 439843002591 SeSA_A2527 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_002115369.1 2411995 D 439843 CDS YP_002115370.1 194738251 2413974..2414873 1 NC_011094.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2414873 439843002592 SeSA_A2528 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide deacetylase YP_002115370.1 2413974 D 439843 CDS YP_002115371.1 194734205 2414870..2416516 1 NC_011094.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2416516 arnT 439843002593 arnT Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-amino-4-deoxy-L-arabinose transferase YP_002115371.1 2414870 D 439843 CDS YP_002115372.1 194737533 2416513..2416848 1 NC_011094.1 identified by match to protein family HMM PF00893; hypothetical protein 2416848 439843002594 SeSA_A2530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115372.1 2416513 D 439843 CDS YP_002115373.1 194734621 2416848..2417225 1 NC_011094.1 hypothetical protein 2417225 439843002595 SeSA_A2531 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115373.1 2416848 D 439843 CDS YP_002115374.1 194737998 complement(2417220..2417477) 1 NC_011094.1 signal transduction protein PmrD 2417477 439843002596 SeSA_A2532 Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal transduction protein PmrD YP_002115374.1 2417220 R 439843 CDS YP_002115375.1 194734141 complement(2417575..2418942) 1 NC_011094.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 2418942 menE 439843002597 menE Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-succinylbenzoic acid--CoA ligase YP_002115375.1 2417575 R 439843 CDS YP_002115376.1 194734201 complement(2418939..2419901) 1 NC_011094.1 'catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate'; O-succinylbenzoate synthase 2419901 menC 439843002598 menC Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-succinylbenzoate synthase YP_002115376.1 2418939 R 439843 CDS YP_002115377.1 194736334 complement(2419901..2420758) 1 NC_011094.1 'catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA'; naphthoate synthase 2420758 menB 439843002599 menB Salmonella enterica subsp. enterica serovar Schwarzengrund str. naphthoate synthase YP_002115377.1 2419901 R 439843 CDS YP_002115378.1 194737755 complement(2420773..2421531) 1 NC_011094.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 2421531 439843002600 SeSA_A2536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl-CoA thioester hydrolase YP_002115378.1 2420773 R 439843 CDS YP_002115379.1 194737329 complement(2421528..2423198) 1 NC_011094.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2423198 menD 439843002601 menD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_002115379.1 2421528 R 439843 CDS YP_002115380.1 194737064 complement(2423284..2424579) 1 NC_011094.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase 2424579 439843002602 SeSA_A2538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. menaquinone-specific isochorismate synthase YP_002115380.1 2423284 R 439843 CDS YP_002115381.1 194736438 complement(2424680..2424985) 1 NC_011094.1 identified by match to protein family HMM PF05957; hypothetical protein 2424985 439843002603 SeSA_A2539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115381.1 2424680 R 439843 CDS YP_002115382.1 194738031 complement(2425040..2425501) 1 NC_011094.1 identified by match to protein family HMM PF00583; hypothetical protein 2425501 439843002604 SeSA_A2540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115382.1 2425040 R 439843 CDS YP_002115383.2 449306311 2425562..2426479 1 NC_011094.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2426479 439843002605 SeSA_A2542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease Z YP_002115383.2 2425562 D 439843 CDS YP_002115384.1 194734442 2426545..2427549 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheW 2427549 439843002606 SeSA_A2543 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chemotaxis protein CheW YP_002115384.1 2426545 D 439843 CDS YP_002115385.1 194736101 complement(2427690..2429147) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2429147 nuoN 439843002607 nuoN Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit N YP_002115385.1 2427690 R 439843 CDS YP_002115386.1 194736746 complement(2429154..2430683) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2430683 nuoM 439843002608 nuoM Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit M YP_002115386.1 2429154 R 439843 CDS YP_002115387.1 194737362 complement(2430760..2432595) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2432595 nuoL 439843002609 nuoL Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit L YP_002115387.1 2430760 R 439843 CDS YP_002115388.1 194737469 complement(2432598..2432900) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2432900 nuoK 439843002610 nuoK Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit K YP_002115388.1 2432598 R 439843 CDS YP_002115389.1 194738076 complement(2432897..2433451) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2433451 nuoJ 439843002611 nuoJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit J YP_002115389.1 2432897 R 439843 CDS YP_002115390.1 194738262 complement(2433462..2434004) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2434004 nuoI 439843002612 nuoI Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit I YP_002115390.1 2433462 R 439843 CDS YP_002115391.1 194734367 complement(2434019..2434996) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2434996 nuoH 439843002613 nuoH Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit H YP_002115391.1 2434019 R 439843 CDS YP_002115392.1 194735527 complement(2434993..2437719) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2437719 nuoG 439843002614 nuoG Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit G YP_002115392.1 2434993 R 439843 CDS YP_002115393.1 194736167 complement(2437750..2439087) 1 NC_011094.1 'shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase'; NADH dehydrogenase I subunit F 2439087 nuoF 439843002615 nuoF Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase I subunit F YP_002115393.1 2437750 R 439843 CDS YP_002115394.1 194736216 complement(2439084..2439584) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2439584 nuoE 439843002616 nuoE Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit E YP_002115394.1 2439084 R 439843 CDS YP_002115395.1 194736818 complement(2439587..2441389) 1 NC_011094.1 'NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms'; NADH:ubiquinone oxidoreductase subunit C/D 2441389 nuoC 439843002617 nuoC Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH:ubiquinone oxidoreductase subunit C/D YP_002115395.1 2439587 R 439843 CDS YP_002115396.1 194736744 complement(2441476..2442138) 1 NC_011094.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2442138 nuoB 439843002618 nuoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit B YP_002115396.1 2441476 R 439843 CDS YP_002115397.1 194736597 complement(2442154..2442597) 1 NC_011094.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2442597 nuoA 439843002619 nuoA Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH dehydrogenase subunit A YP_002115397.1 2442154 R 439843 CDS YP_002115398.1 194735719 complement(2442992..2443144) 1 NC_011094.1 hypothetical protein 2443144 439843002620 SeSA_A2557 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115398.1 2442992 R 439843 CDS YP_002115399.1 194735113 complement(2443224..2444162) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT 2444162 439843002621 SeSA_A2558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator PecT YP_002115399.1 2443224 R 439843 CDS YP_002115400.1 194734179 2445094..2446308 1 NC_011094.1 'broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor'; aminotransferase 2446308 439843002622 SeSA_A2559 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminotransferase YP_002115400.1 2445094 D 439843 CDS YP_002115401.1 194734118 2446402..2447001 1 NC_011094.1 identified by match to protein family HMM PF01966; hypothetical protein 2447001 439843002623 SeSA_A2560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115401.1 2446402 D 439843 CDS YP_002115402.1 194737718 complement(2447093..2448919) 1 NC_011094.1 identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter 2448919 439843002624 SeSA_A2561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. citrate transporter YP_002115402.1 2447093 R 439843 CDS YP_002115403.1 194734861 complement(2448996..2449655) 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase 2449655 439843002625 SeSA_A2562 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatase YP_002115403.1 2448996 R 439843 CDS YP_002115404.1 194736214 complement(2449666..2450205) 1 NC_011094.1 identified by match to protein family HMM PF03887; hypothetical protein 2450205 439843002626 SeSA_A2563 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115404.1 2449666 R 439843 CDS YP_002115405.1 194737968 complement(2450243..2450698) 1 NC_011094.1 identified by match to protein family HMM PF04217; hypothetical protein 2450698 439843002627 SeSA_A2564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115405.1 2450243 R 439843 CDS YP_002115406.1 194738246 2450867..2451001 1 NC_011094.1 identified by glimmer; hypothetical protein 2451001 439843002628 SeSA_A2565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115406.1 2450867 D 439843 CDS YP_002115407.1 194736648 2451038..2452240 1 NC_011094.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2452240 ackA 439843002629 ackA Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetate kinase YP_002115407.1 2451038 D 439843 CDS YP_002115408.1 194737608 2452317..2454461 1 NC_011094.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2454461 pta 439843002630 pta Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate acetyltransferase YP_002115408.1 2452317 D 439843 CDS YP_002115409.1 194738252 2454679..2456199 1 NC_011094.1 identified by match to protein family HMM PF03606; hypothetical protein 2456199 439843002631 SeSA_A2568 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115409.1 2454679 D 439843 CDS YP_002115410.1 194736021 complement(2456248..2457201) 1 NC_011094.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein 2457201 439843002632 SeSA_A2569 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transketolase domain-containing protein YP_002115410.1 2456248 R 439843 CDS YP_002115411.1 194735363 complement(2457194..2458024) 1 NC_011094.1 identified by match to protein family HMM PF00456; transketolase domain-containing protein 2458024 439843002633 SeSA_A2570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transketolase domain-containing protein YP_002115411.1 2457194 R 439843 CDS YP_002115412.1 194735701 complement(2458021..2459412) 1 NC_011094.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2459412 ulaA 439843002634 ulaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system ascorbate-specific transporter subunit IIC YP_002115412.1 2458021 R 439843 CDS YP_002115413.1 194734048 complement(2459433..2459705) 1 NC_011094.1 identified by match to protein family HMM PF02302; phosphotransferase system, lactose/cellobiose-specific IIB subunit 2459705 439843002635 SeSA_A2572 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_002115413.1 2459433 R 439843 CDS YP_002115414.1 194736612 complement(2459786..2460229) 1 NC_011094.1 identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA cryptic 2460229 439843002636 SeSA_A2573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannitol-specific transporter subunit IIA cryptic YP_002115414.1 2459786 R 439843 CDS YP_002115415.1 194737232 2460482..2461501 1 NC_011094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2461501 439843002637 SeSA_A2574 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein LacI YP_002115415.1 2460482 D 439843 CDS YP_002115416.1 194736221 complement(2461507..2462061) 1 NC_011094.1 identified by match to protein family HMM PF00293; nudix hydrolase 3 2462061 439843002638 SeSA_A2575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nudix hydrolase 3 YP_002115416.1 2461507 R 439843 CDS YP_002115417.1 194736823 complement(2462118..2462669) 1 NC_011094.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 2462669 439843002639 SeSA_A2576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphodiesterase YP_002115417.1 2462118 R 439843 CDS YP_002115418.1 194737625 complement(2462725..2463369) 1 NC_011094.1 identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein 2463369 439843002640 SeSA_A2577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase domain-containing protein YP_002115418.1 2462725 R 439843 CDS YP_002115419.1 194738260 2463512..2464159 1 NC_011094.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 2464159 439843002641 SeSA_A2578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase, N- domain YP_002115419.1 2463512 D 439843 CDS YP_002115420.1 194736673 2464285..2465178 1 NC_011094.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2465178 439843002642 SeSA_A2579 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115420.1 2464285 D 439843 CDS YP_002115421.1 194737307 complement(2465230..2466006) 1 NC_011094.1 identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit 2466006 hisP 439843002643 hisP Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine/lysine/arginine/ornithine transporter subunit YP_002115421.1 2465230 R 439843 CDS YP_002115422.1 194735740 complement(2466017..2466724) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM 2466724 hisM 439843002644 hisM Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine ABC transporter permease HisM YP_002115422.1 2466017 R 439843 CDS YP_002115423.1 194736324 complement(2466721..2467407) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ 2467407 hisQ 439843002645 hisQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine ABC transporter permease HisQ YP_002115423.1 2466721 R 439843 CDS YP_002115424.1 194734670 complement(2467588..2468370) 1 NC_011094.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2468370 439843002646 SeSA_A2583 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine-arginine-ornithine-binding periplasmic protein YP_002115424.1 2467588 R 439843 CDS YP_002115425.1 194735350 complement(2468608..2469390) 1 NC_011094.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2469390 439843002647 SeSA_A2584 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine-arginine-ornithine-binding periplasmic protein YP_002115425.1 2468608 R 439843 CDS YP_002115426.1 194737805 2469468..2469590 1 NC_011094.1 hypothetical protein 2469590 439843002648 SeSA_A2585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115426.1 2469468 D 439843 CDS YP_002115427.1 194738284 complement(2469679..2470248) 1 NC_011094.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2470248 439843002649 SeSA_A2586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002115427.1 2469679 R 439843 CDS YP_002115428.1 194736895 complement(2470275..2471681) 1 NC_011094.1 identified by match to protein family HMM PF00324; amino acid transporter 2471681 439843002650 SeSA_A2587 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid transporter YP_002115428.1 2470275 R 439843 CDS YP_002115429.1 194736497 complement(2471745..2472848) 1 NC_011094.1 identified by match to protein family HMM PF01168; amino acid racemase 2472848 439843002651 SeSA_A2588 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid racemase YP_002115429.1 2471745 R 439843 CDS YP_002115430.1 194735996 complement(2472850..2474271) 1 NC_011094.1 identified by match to protein family HMM PF00324; amino acid transporter 2474271 439843002652 SeSA_A2589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amino acid transporter YP_002115430.1 2472850 R 439843 CDS YP_002115431.1 194735492 complement(2474362..2475759) 1 NC_011094.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 2475759 439843002653 SeSA_A2590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. diaminopimelate decarboxylase YP_002115431.1 2474362 R 439843 CDS YP_002115432.1 194734948 2475971..2477398 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2477398 439843002654 SeSA_A2591 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein YP_002115432.1 2475971 D 439843 CDS YP_002115433.1 194734420 complement(2477434..2478951) 1 NC_011094.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2478951 purF 439843002655 purF Salmonella enterica subsp. enterica serovar Schwarzengrund str. amidophosphoribosyltransferase YP_002115433.1 2477434 R 439843 CDS YP_002115434.1 194737346 complement(2478989..2479477) 1 NC_011094.1 membrane protein required for colicin V production; colicin V production protein 2479477 cvpA 439843002656 cvpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. colicin V production protein YP_002115434.1 2478989 R 439843 CDS YP_002115435.1 194734609 complement(2479788..2480462) 1 NC_011094.1 identified by match to protein family HMM PF05036; hypothetical protein 2480462 439843002657 SeSA_A2594 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115435.1 2479788 R 439843 CDS YP_002115436.1 194734517 complement(2480452..2481720) 1 NC_011094.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2481720 439843002658 SeSA_A2595 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_002115436.1 2480452 R 439843 CDS YP_002115437.1 194734039 complement(2481788..2482702) 1 NC_011094.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2482702 accD 439843002659 accD Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA carboxylase subunit beta YP_002115437.1 2481788 R 439843 CDS YP_002115438.1 194738384 complement(2482852..2483511) 1 NC_011094.1 identified by match to protein family HMM PF09335; hypothetical protein 2483511 439843002660 SeSA_A2597 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115438.1 2482852 R 439843 CDS YP_002115439.1 194734499 complement(2483560..2484372) 1 NC_011094.1 'mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability'; tRNA pseudouridine synthase A 2484372 truA 439843002661 truA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA pseudouridine synthase A YP_002115439.1 2483560 R 439843 CDS YP_002115440.1 194737107 complement(2484372..2485385) 1 NC_011094.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase 2485385 439843002662 SeSA_A2599 Salmonella enterica subsp. enterica serovar Schwarzengrund str. semialdehyde dehydrogenase YP_002115440.1 2484372 R 439843 CDS YP_002115441.1 194736566 complement(2485453..2486589) 1 NC_011094.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase 2486589 439843002663 SeSA_A2600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. erythronate-4-phosphate dehydrogenase YP_002115441.1 2485453 R 439843 CDS YP_002115442.1 194736417 2486693..2487694 1 NC_011094.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2487694 flk 439843002664 flk Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagella biosynthesis regulator YP_002115442.1 2486693 D 439843 CDS YP_002115443.1 194735953 complement(2487691..2488869) 1 NC_011094.1 identified by match to protein family HMM PF07690; hypothetical protein 2488869 439843002665 SeSA_A2602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115443.1 2487691 R 439843 CDS YP_002115444.1 194734954 complement(2489049..2489423) 1 NC_011094.1 hypothetical protein 2489423 439843002666 SeSA_A2603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115444.1 2489049 R 439843 CDS YP_002115445.1 194735460 2489772..2489990 1 NC_011094.1 hypothetical protein 2489990 439843002667 SeSA_A2604 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115445.1 2489772 D 439843 CDS YP_002115446.1 194734732 2489990..2490508 1 NC_011094.1 hypothetical protein 2490508 439843002668 SeSA_A2605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115446.1 2489990 D 439843 CDS YP_002115447.1 194735979 complement(2490575..2491186) 1 NC_011094.1 identified by match to protein family HMM PF02517; caax amino protease family protein 2491186 439843002669 SeSA_A2606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. caax amino protease family protein YP_002115447.1 2490575 R 439843 CDS YP_002115448.1 194734265 complement(2491329..2492543) 1 NC_011094.1 'FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP'; 3-oxoacyl-ACP synthase 2492543 439843002670 SeSA_A2607 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-oxoacyl-ACP synthase YP_002115448.1 2491329 R 439843 CDS YP_002115449.1 194735009 2492703..2494703 1 NC_011094.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2494703 mnmC 439843002671 mnmC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5-methylaminomethyl-2-thiouridine methyltransferase YP_002115449.1 2492703 D 439843 CDS YP_002115450.1 194737364 complement(2494755..2495030) 1 NC_011094.1 identified by match to protein family HMM PF08891; hypothetical protein 2495030 439843002672 SeSA_A2609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115450.1 2494755 R 439843 CDS YP_002115451.1 194737920 complement(2495063..2495611) 1 NC_011094.1 identified by match to protein family HMM PF04315; hypothetical protein 2495611 439843002673 SeSA_A2610 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115451.1 2495063 R 439843 CDS YP_002115452.1 194736462 complement(2495611..2496420) 1 NC_011094.1 identified by match to protein family HMM PF01925; hypothetical protein 2496420 439843002674 SeSA_A2611 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115452.1 2495611 R 439843 CDS YP_002115453.1 194736928 complement(2496420..2497244) 1 NC_011094.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2497244 mepA 439843002675 mepA Salmonella enterica subsp. enterica serovar Schwarzengrund str. penicillin-insensitive murein endopeptidase YP_002115453.1 2496420 R 439843 CDS YP_002115454.1 194736067 complement(2497248..2498333) 1 NC_011094.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2498333 aroC 439843002676 aroC Salmonella enterica subsp. enterica serovar Schwarzengrund str. chorismate synthase YP_002115454.1 2497248 R 439843 CDS YP_008119784.1 513549402 complement(2498369..2499301) 1 NC_011094.1 50S ribosomal protein L3 glutamine methyltransferase 2499301 prmB 439843002677 prmB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L3 glutamine methyltransferase YP_008119784.1 2498369 R 439843 CDS YP_002115455.1 194736740 2499467..2500018 1 NC_011094.1 identified by match to protein family HMM PF01713; hypothetical protein 2500018 439843002678 SeSA_A2615 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115455.1 2499467 D 439843 CDS YP_002115456.1 194736282 complement(2500118..2500603) 1 NC_011094.1 identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase 2500603 sixA 439843002679 sixA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphohistidine phosphatase YP_002115456.1 2500118 R 439843 CDS YP_002115457.1 194735469 complement(2500812..2502959) 1 NC_011094.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2502959 fadJ 439843002680 fadJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. multifunctional fatty acid oxidation complex subunit alpha YP_002115457.1 2500812 R 439843 CDS YP_002115458.1 194735962 complement(2502959..2504269) 1 NC_011094.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2504269 fadI 439843002681 fadI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-ketoacyl-CoA thiolase YP_002115458.1 2502959 R 439843 CDS YP_002115459.1 194734440 complement(2504447..2504731) 1 NC_011094.1 identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743; hypothetical protein 2504731 439843002682 SeSA_A2619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115459.1 2504447 R 439843 CDS YP_002115460.1 194734927 2505096..2506409 1 NC_011094.1 identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2506409 439843002683 SeSA_A2620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. long-chain fatty acid outer membrane transporter YP_002115460.1 2505096 D 439843 CDS YP_002115461.1 194737372 complement(2506470..2507225) 1 NC_011094.1 identified by match to protein family HMM PF04333; lipoprotein, VacJ family protein 2507225 439843002684 SeSA_A2621 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein, VacJ family protein YP_002115461.1 2506470 R 439843 CDS YP_002115462.1 194737910 2507514..2508455 1 NC_011094.1 hypothetical protein 2508455 439843002685 SeSA_A2622 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115462.1 2507514 D 439843 CDS YP_002115463.1 194736399 complement(2508761..2509699) 1 NC_011094.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 2509699 439843002687 SeSA_A2624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protease YP_002115463.1 2508761 R 439843 CDS YP_002115464.1 194736936 complement(2509967..2511214) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulatory proteinpgtA 2511214 439843002688 SeSA_A2625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate transport system transcriptional regulatory proteinpgtA YP_002115464.1 2509967 R 439843 CDS YP_002115465.1 194735732 complement(2511204..2513210) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB 2513210 439843002689 SeSA_A2626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate transport system sensor protein PgtB YP_002115465.1 2511204 R 439843 CDS YP_002115466.2 449306312 complement(2513207..2514400) 1 NC_011094.1 phosphoglycerate transport: protein for signal transmission 2514400 439843002690 SeSA_A2628 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate transport: protein for signal transmission YP_002115466.2 2513207 R 439843 CDS YP_002115467.1 194734073 2514836..2516227 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transport: transporter 2516227 439843002691 SeSA_A2629 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate transport: transporter YP_002115467.1 2514836 D 439843 CDS YP_002115468.1 194737664 complement(2516477..2516719) 1 NC_011094.1 hypothetical protein 2516719 439843002692 SeSA_A2630 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115468.1 2516477 R 439843 CDS YP_002115469.1 194738128 complement(2516880..2516993) 1 NC_011094.1 identified by glimmer; hypothetical protein 2516993 439843002693 SeSA_A2631 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115469.1 2516880 R 439843 CDS YP_008119785.1 513549403 2517241..2518161 1 NC_011094.1 lipid A biosynthesis lauroyl acyltransferase 2518161 439843002694 SeSA_A2632 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipid A biosynthesis lauroyl acyltransferase YP_008119785.1 2517241 D 439843 CDS YP_002115470.1 194737160 2518276..2518398 1 NC_011094.1 identified by glimmer; hypothetical protein 2518398 439843002695 SeSA_A2633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115470.1 2518276 D 439843 CDS YP_002115471.1 194735137 complement(2518685..2519923) 1 NC_011094.1 identified by match to protein family HMM PF00155; aminotransferase 2519923 439843002696 SeSA_A2634 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminotransferase YP_002115471.1 2518685 R 439843 CDS YP_002115472.1 194735671 complement(2520266..2520412) 1 NC_011094.1 identified by glimmer; hypothetical protein 2520412 439843002697 SeSA_A2635 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115472.1 2520266 R 439843 CDS YP_002115473.1 194737787 complement(2520645..2521610) 1 NC_011094.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2521610 glk 439843002698 glk Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucokinase YP_002115473.1 2520645 R 439843 CDS YP_002115474.1 194736385 2521814..2523049 1 NC_011094.1 identified by match to protein family HMM PF00654; hypothetical protein 2523049 439843002699 SeSA_A2637 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115474.1 2521814 D 439843 CDS YP_002115475.1 194734253 complement(2523069..2524721) 1 NC_011094.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 2524721 439843002700 SeSA_A2639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. indole-3-pyruvate decarboxylase YP_002115475.1 2523069 R 439843 CDS YP_002115476.1 194734743 2524716..2524904 1 NC_011094.1 identified by glimmer; hypothetical protein 2524904 439843002701 SeSA_A2638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115476.1 2524716 D 439843 CDS YP_002115477.1 194735566 2524901..2525899 1 NC_011094.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family protein 2525899 439843002702 SeSA_A2640 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase, aldo/keto reductase family protein YP_002115477.1 2524901 D 439843 CDS YP_002115478.1 194736081 2526013..2526339 1 NC_011094.1 hypothetical protein 2526339 439843002703 SeSA_A2641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115478.1 2526013 D 439843 CDS YP_002115479.1 194735091 complement(2526400..2527641) 1 NC_011094.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH 2527641 439843002704 SeSA_A2642 Salmonella enterica subsp. enterica serovar Schwarzengrund str. manganese transport protein MntH YP_002115479.1 2526400 R 439843 CDS YP_002115480.1 194735794 2527984..2529186 1 NC_011094.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2529186 nupC 439843002705 nupC Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside transporter NupC YP_002115480.1 2527984 D 439843 CDS YP_002115481.1 194736553 complement(2529240..2531429) 1 NC_011094.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; diguanylate cyclase 2531429 439843002706 SeSA_A2644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. diguanylate cyclase YP_002115481.1 2529240 R 439843 CDS YP_002115482.1 194737057 2532050..2532397 1 NC_011094.1 identified by match to protein family HMM PF07037; hypothetical protein 2532397 439843002709 SeSA_A2647 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115482.1 2532050 D 439843 CDS YP_002115483.1 194735830 2532399..2532791 1 NC_011094.1 identified by match to protein family HMM PF07037; hypothetical protein 2532791 439843002710 SeSA_A2648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115483.1 2532399 D 439843 CDS YP_002115484.1 194736951 complement(2532845..2534260) 1 NC_011094.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2534260 gltX 439843002711 gltX Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamyl-tRNA synthetase YP_002115484.1 2532845 R 439843 CDS YP_002115485.1 194736343 complement(2535230..2536114) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR 2536114 439843002716 SeSA_A2654 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator XapR YP_002115485.1 2535230 R 439843 CDS YP_002115486.1 194736044 complement(2536166..2536324) 1 NC_011094.1 identified by match to protein family HMM TIGR03510; XapX domain 2536324 439843002717 SeSA_A2655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. XapX domain YP_002115486.1 2536166 R 439843 CDS YP_002115487.1 194735371 complement(2536383..2537639) 1 NC_011094.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG 2537639 nupG 439843002718 nupG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside permease NupG YP_002115487.1 2536383 R 439843 CDS YP_002115488.1 194735023 complement(2537694..2538527) 1 NC_011094.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2538527 xapA 439843002719 xapA Salmonella enterica subsp. enterica serovar Schwarzengrund str. purine nucleoside phosphorylase YP_002115488.1 2537694 R 439843 CDS YP_002115489.1 194734373 2538783..2539544 1 NC_011094.1 identified by match to protein family HMM PF07135; hypothetical protein 2539544 439843002720 SeSA_A2658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115489.1 2538783 D 439843 CDS YP_002115490.1 194737465 complement(2539606..2540532) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein 2540532 439843002721 SeSA_A2659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. OsmT protein YP_002115490.1 2539606 R 439843 CDS YP_002115491.1 194736459 2540622..2541620 1 NC_011094.1 identified by match to protein family HMM PF01758; transporter bile acid/Na+ symporter family protein 2541620 439843002722 SeSA_A2660 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter bile acid/Na+ symporter family protein YP_002115491.1 2540622 D 439843 CDS YP_002115492.1 194734557 complement(2541617..2541835) 1 NC_011094.1 hypothetical protein 2541835 439843002723 SeSA_A2661 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115492.1 2541617 R 439843 CDS YP_002115493.1 194734182 complement(2541837..2543852) 1 NC_011094.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2543852 ligA 439843002724 ligA Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD-dependent DNA ligase LigA YP_002115493.1 2541837 R 439843 CDS YP_002115494.1 194738121 complement(2543924..2544910) 1 NC_011094.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2544910 zipA 439843002725 zipA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein ZipA YP_002115494.1 2543924 R 439843 CDS YP_002115495.1 194736913 2545040..2545903 1 NC_011094.1 role in sulfur assimilation; sulfate transport protein CysZ 2545903 439843002726 SeSA_A2664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate transport protein CysZ YP_002115495.1 2545040 D 439843 CDS YP_002115496.1 194736306 2546067..2547038 1 NC_011094.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2547038 cysK 439843002727 cysK Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine synthase A YP_002115496.1 2546067 D 439843 CDS YP_002115497.1 194735689 complement(2547157..2547282) 1 NC_011094.1 hypothetical protein 2547282 439843002728 SeSA_A2666 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115497.1 2547157 R 439843 CDS YP_002115498.1 194737670 2547422..2547679 1 NC_011094.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2547679 ptsH 439843002729 ptsH Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr YP_002115498.1 2547422 D 439843 CDS YP_002115499.1 194738331 2547728..2549455 1 NC_011094.1 'Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system'; phosphoenolpyruvate-protein phosphotransferase 2549455 ptsI 439843002730 ptsI Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoenolpyruvate-protein phosphotransferase YP_002115499.1 2547728 D 439843 CDS YP_002115500.1 194736672 2549496..2550005 1 NC_011094.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2550005 crr 439843002731 crr Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system glucose-specific transporter YP_002115500.1 2549496 D 439843 CDS YP_002115501.1 194736239 complement(2550169..2550408) 1 NC_011094.1 hypothetical protein 2550408 439843002732 SeSA_A2670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115501.1 2550169 R 439843 CDS YP_002115502.1 194735083 complement(2550405..2551271) 1 NC_011094.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2551271 pdxK 439843002733 pdxK Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxal kinase YP_002115502.1 2550405 R 439843 CDS YP_002115503.1 194734061 2551354..2552646 1 NC_011094.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2552646 439843002734 SeSA_A2672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GntR family transcriptional regulator YP_002115503.1 2551354 D 439843 CDS YP_002115504.1 194734300 2552661..2553380 1 NC_011094.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2553380 439843002735 SeSA_A2673 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine amidotransferase YP_002115504.1 2552661 D 439843 CDS YP_002115505.1 194734688 2553439..2553816 1 NC_011094.1 hypothetical protein 2553816 439843002736 SeSA_A2674 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115505.1 2553439 D 439843 CDS YP_002115506.1 194738174 complement(2553849..2554760) 1 NC_011094.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2554760 cysM 439843002737 cysM Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine synthase B YP_002115506.1 2553849 R 439843 CDS YP_002115507.1 194736585 2554751..2554876 1 NC_011094.1 identified by glimmer; hypothetical protein 2554876 439843002738 SeSA_A2675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115507.1 2554751 D 439843 CDS YP_002115508.1 194734024 complement(2554881..2555975) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit 2555975 cysA 439843002739 cysA Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate/thiosulfate transporter subunit YP_002115508.1 2554881 R 439843 CDS YP_002115509.1 194735804 complement(2555965..2556840) 1 NC_011094.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2556840 cysW 439843002740 cysW Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate/thiosulfate transporter permease subunit YP_002115509.1 2555965 R 439843 CDS YP_002115510.1 194738129 complement(2556840..2557673) 1 NC_011094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit 2557673 cysT 439843002741 cysT Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate/thiosulfate transporter subunit YP_002115510.1 2556840 R 439843 CDS YP_002115511.1 194737699 complement(2557673..2558689) 1 NC_011094.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit 2558689 cysP 439843002742 cysP Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiosulfate transporter subunit YP_002115511.1 2557673 R 439843 CDS YP_002115512.1 194736589 complement(2558847..2559638) 1 NC_011094.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase 2559638 fabG 439843002743 fabG Salmonella enterica subsp. enterica serovar Schwarzengrund str. short chain dehydrogenase YP_002115512.1 2558847 R 439843 CDS YP_002115513.1 194734933 complement(2559876..2560775) 1 NC_011094.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; Dyp-type peroxidase family protein 2560775 439843002744 SeSA_A2682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Dyp-type peroxidase family protein YP_002115513.1 2559876 R 439843 CDS YP_002115514.1 194735211 complement(2560870..2561445) 1 NC_011094.1 identified by match to protein family HMM PF06572; hypothetical protein 2561445 439843002745 SeSA_A2683 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115514.1 2560870 R 439843 CDS YP_002115515.1 194735894 complement(2561507..2561956) 1 NC_011094.1 hypothetical protein 2561956 439843002746 SeSA_A2684 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115515.1 2561507 R 439843 CDS YP_002115516.1 194733953 complement(2561943..2562368) 1 NC_011094.1 identified by match to protein family HMM PF00583; acetyltransferase 2562368 439843002747 SeSA_A2685 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase YP_002115516.1 2561943 R 439843 CDS YP_002115517.1 194734579 2562581..2563450 1 NC_011094.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2563450 amiA 439843002748 amiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmuramoyl-l-alanine amidase I YP_002115517.1 2562581 D 439843 CDS YP_002115518.1 194737732 2563453..2564352 1 NC_011094.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2564352 hemF 439843002749 hemF Salmonella enterica subsp. enterica serovar Schwarzengrund str. coproporphyrinogen III oxidase YP_002115518.1 2563453 D 439843 CDS YP_002115519.1 194738334 complement(2564452..2565504) 1 NC_011094.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2565504 439843002750 SeSA_A2688 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator EutR YP_002115519.1 2564452 R 439843 CDS YP_002115520.1 194736969 complement(2565552..2566046) 1 NC_011094.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK 2566046 439843002751 SeSA_A2689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutK YP_002115520.1 2565552 R 439843 CDS YP_002115521.1 194737016 complement(2566059..2566718) 1 NC_011094.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL 2566718 439843002752 SeSA_A2690 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutL YP_002115521.1 2566059 R 439843 CDS YP_002115522.1 194736127 complement(2566728..2567624) 1 NC_011094.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2567624 eutC 439843002753 eutC Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine ammonia-lyase small subunit YP_002115522.1 2566728 R 439843 CDS YP_002115523.1 194735586 complement(2567643..2569004) 1 NC_011094.1 identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase, large subunit 2569004 eutB 439843002754 eutB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine ammonia-lyase, large subunit YP_002115523.1 2567643 R 439843 CDS YP_002115524.1 194735548 complement(2569016..2570419) 1 NC_011094.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2570419 eutA 439843002755 eutA Salmonella enterica subsp. enterica serovar Schwarzengrund str. reactivating factor for ethanolamine ammonia lyase YP_002115524.1 2569016 R 439843 CDS YP_002115525.1 194735021 complement(2570416..2571642) 1 NC_011094.1 identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH 2571642 eutH 439843002756 eutH Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutH YP_002115525.1 2570416 R 439843 CDS YP_002115526.1 194736764 complement(2571762..2572949) 1 NC_011094.1 identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG 2572949 439843002757 SeSA_A2695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutG YP_002115526.1 2571762 R 439843 CDS YP_002115527.1 194736322 complement(2572939..2573778) 1 NC_011094.1 identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ 2573778 eutJ 439843002758 eutJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutJ YP_002115527.1 2572939 R 439843 CDS YP_002115528.1 194737512 complement(2573789..2575192) 1 NC_011094.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2575192 eutE 439843002759 eutE Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutE YP_002115528.1 2573789 R 439843 CDS YP_008119786.1 513549404 complement(2575204..2575503) 1 NC_011094.1 ethanolimine utilization protein EutN 2575503 eutN 439843002760 eutN Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolimine utilization protein EutN YP_008119786.1 2575204 R 439843 CDS YP_008119787.1 513549405 complement(2575604..2575894) 1 NC_011094.1 ethanolamine utilization protein EutM 2575894 439843002761 SeSA_A2699 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutM YP_008119787.1 2575604 R 439843 CDS YP_002115529.1 194738003 complement(2575935..2576951) 1 NC_011094.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2576951 eutD 439843002762 eutD Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransacetylase YP_002115529.1 2575935 R 439843 CDS YP_002115530.1 194734949 complement(2576948..2577751) 1 NC_011094.1 identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase 2577751 eutT 439843002763 eutT Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization cobalamin adenosyltransferase YP_002115530.1 2576948 R 439843 CDS YP_002115531.1 194736952 complement(2577748..2578437) 1 NC_011094.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ 2578437 439843002764 SeSA_A2702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutQ YP_002115531.1 2577748 R 439843 CDS YP_002115532.1 194736025 complement(2578415..2578894) 1 NC_011094.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2578894 eutP 439843002765 eutP Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein, EutP YP_002115532.1 2578415 R 439843 CDS YP_002115533.1 194735400 complement(2578907..2579242) 1 NC_011094.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS 2579242 439843002766 SeSA_A2704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ethanolamine utilization protein EutS YP_002115533.1 2578907 R 439843 CDS YP_002115534.1 194734969 complement(2579659..2581938) 1 NC_011094.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2581938 maeB 439843002767 maeB Salmonella enterica subsp. enterica serovar Schwarzengrund str. malic enzyme YP_002115534.1 2579659 R 439843 CDS YP_002115535.1 194734430 2582210..2583160 1 NC_011094.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2583160 tal 439843002768 tal Salmonella enterica subsp. enterica serovar Schwarzengrund str. transaldolase A YP_002115535.1 2582210 D 439843 CDS YP_002115536.1 194736024 2583180..2585180 1 NC_011094.1 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 2585180 tkt 439843002769 tkt Salmonella enterica subsp. enterica serovar Schwarzengrund str. transketolase YP_002115536.1 2583180 D 439843 CDS YP_002115537.1 194735373 complement(2585243..2585473) 1 NC_011094.1 hypothetical protein 2585473 439843002770 SeSA_A2708 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115537.1 2585243 R 439843 CDS YP_002115538.1 194734979 complement(2585602..2586645) 1 NC_011094.1 identified by match to protein family HMM PF06674; hypothetical protein 2586645 439843002771 SeSA_A2709 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115538.1 2585602 R 439843 CDS YP_002115539.1 194734362 complement(2586770..2587345) 1 NC_011094.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH 2587345 439843002772 SeSA_A2710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase YffH YP_002115539.1 2586770 R 439843 CDS YP_002115540.1 194737948 2587549..2588847 1 NC_011094.1 identified by match to protein family HMM PF00144; hypothetical protein 2588847 439843002773 SeSA_A2711 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115540.1 2587549 D 439843 CDS YP_002115541.1 194737239 complement(2589296..2591257) 1 NC_011094.1 'unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)'; oxidoreductase Fe-S binding subunit 2591257 439843002774 SeSA_A2712 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase Fe-S binding subunit YP_002115541.1 2589296 R 439843 CDS YP_002115542.1 194734328 2591443..2593143 1 NC_011094.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2593143 439843002775 SeSA_A2713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrate/nitrite sensor protein NarQ YP_002115542.1 2591443 D 439843 CDS YP_002115543.1 194738041 2593328..2596441 1 NC_011094.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2596441 acrD 439843002776 acrD Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoglycoside/multidrug efflux system YP_002115543.1 2593328 D 439843 CDS YP_002115544.1 194734458 2597015..2597371 1 NC_011094.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2597371 439843002777 SeSA_A2715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115544.1 2597015 D 439843 CDS YP_002115545.1 194733983 2597375..2598502 1 NC_011094.1 'dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.'; succinyl-diaminopimelate desuccinylase 2598502 dapE 439843002778 dapE Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinyl-diaminopimelate desuccinylase YP_002115545.1 2597375 D 439843 CDS YP_002115546.1 194734647 2598530..2598730 1 NC_011094.1 hypothetical protein 2598730 439843002779 SeSA_A2717 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115546.1 2598530 D 439843 CDS YP_002115547.1 194734085 complement(2598757..2600775) 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase 2600775 439843002780 SeSA_A2718 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase YP_002115547.1 2598757 R 439843 CDS YP_002115548.1 194738170 complement(2600791..2601654) 1 NC_011094.1 identified by match to protein family HMM PF04228; zinc protease 2601654 439843002781 SeSA_A2719 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc protease YP_002115548.1 2600791 R 439843 CDS YP_002115549.1 194737675 complement(2601785..2602498) 1 NC_011094.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 2602498 purC 439843002782 purC Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_002115549.1 2601785 R 439843 CDS YP_002115550.1 194737169 complement(2602501..2602614) 1 NC_011094.1 identified by glimmer; hypothetical protein 2602614 439843002783 SeSA_A2721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115550.1 2602501 R 439843 CDS YP_002115551.1 194738010 complement(2602673..2603707) 1 NC_011094.1 identified by match to protein family HMM PF06804; lipoprotein 2603707 439843002784 SeSA_A2722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002115551.1 2602673 R 439843 CDS YP_002115552.1 194738146 complement(2603724..2604602) 1 NC_011094.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2604602 dapA 439843002785 dapA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydrodipicolinate synthase YP_002115552.1 2603724 R 439843 CDS YP_002115553.1 194736929 2604748..2605320 1 NC_011094.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2605320 gcvR 439843002786 gcvR Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine cleavage system transcriptional repressor YP_002115553.1 2604748 D 439843 CDS YP_002115554.1 194736256 2605320..2605790 1 NC_011094.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2605790 bcp 439843002787 bcp Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioredoxin-dependent thiol peroxidase YP_002115554.1 2605320 D 439843 CDS YP_002115555.1 194735641 complement(2605837..2606976) 1 NC_011094.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2606976 439843002788 SeSA_A2726 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerate kinase YP_002115555.1 2605837 R 439843 CDS YP_002115556.1 194735573 complement(2606982..2608250) 1 NC_011094.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; gluconate transporter 2608250 439843002789 SeSA_A2727 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gluconate transporter YP_002115556.1 2606982 R 439843 CDS YP_002115557.1 194734848 complement(2608318..2609499) 1 NC_011094.1 identified by match to protein family HMM PF05651; transcriptional regulator, CdaR 2609499 439843002790 SeSA_A2728 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, CdaR YP_002115557.1 2608318 R 439843 CDS YP_002115558.1 194734220 complement(2609589..2609711) 1 NC_011094.1 identified by glimmer; hypothetical protein 2609711 439843002791 SeSA_A2729 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115558.1 2609589 R 439843 CDS YP_002115559.1 194734852 complement(2609781..2610869) 1 NC_011094.1 identified by match to protein family HMM PF01594; permease PerM 2610869 439843002792 SeSA_A2730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. permease PerM YP_002115559.1 2609781 R 439843 CDS YP_002115560.1 194734197 2611056..2612519 1 NC_011094.1 identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2612519 439843002793 SeSA_A2731 Salmonella enterica subsp. enterica serovar Schwarzengrund str. TPR repeat-containing protein YfgC YP_002115560.1 2611056 D 439843 CDS YP_002115561.1 194736888 2612559..2612918 1 NC_011094.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2612918 arsC 439843002794 arsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. arsenate reductase YP_002115561.1 2612559 D 439843 CDS YP_002115562.1 194735099 complement(2612945..2613670) 1 NC_011094.1 'controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP'; DNA replication initiation factor 2613670 hda 439843002795 hda Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA replication initiation factor YP_002115562.1 2612945 R 439843 CDS YP_002115563.1 194734259 complement(2613741..2615030) 1 NC_011094.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter 2615030 uraA 439843002796 uraA Salmonella enterica subsp. enterica serovar Schwarzengrund str. uracil transporter YP_002115563.1 2613741 R 439843 CDS YP_002115564.1 194734892 complement(2615118..2615744) 1 NC_011094.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2615744 upp 439843002797 upp Salmonella enterica subsp. enterica serovar Schwarzengrund str. uracil phosphoribosyltransferase YP_002115564.1 2615118 R 439843 CDS YP_002115565.1 194737500 2615979..2616122 1 NC_011094.1 identified by glimmer; hypothetical protein 2616122 439843002798 SeSA_A2736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115565.1 2615979 D 439843 CDS YP_002115566.1 194738124 2616158..2617195 1 NC_011094.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2617195 purM 439843002799 purM Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylaminoimidazole synthetase YP_002115566.1 2616158 D 439843 CDS YP_002115567.1 194737471 2617195..2617833 1 NC_011094.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2617833 purN 439843002800 purN Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylglycinamide formyltransferase YP_002115567.1 2617195 D 439843 CDS YP_002115568.1 194738091 2618022..2620088 1 NC_011094.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2620088 ppk 439843002801 ppk Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyphosphate kinase YP_002115568.1 2618022 D 439843 CDS YP_002115569.1 194736188 2620054..2621634 1 NC_011094.1 identified by match to protein family HMM PF02541; exopolyphosphatase 2621634 439843002802 SeSA_A2740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exopolyphosphatase YP_002115569.1 2620054 D 439843 CDS YP_002115570.1 194736785 complement(2621670..2623883) 1 NC_011094.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; hypothetical protein 2623883 439843002803 SeSA_A2741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115570.1 2621670 R 439843 CDS YP_002115571.1 194734325 2624344..2624487 1 NC_011094.1 hypothetical protein 2624487 439843002804 SeSA_A2742 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115571.1 2624344 D 439843 CDS YP_002115572.1 194734545 complement(2625377..2625733) 1 NC_011094.1 transposase B 2625733 439843002805 SeSA_A2743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase B YP_002115572.1 2625377 R 439843 CDS YP_002115573.1 194735323 complement(2625890..2627467) 1 NC_011094.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2627467 guaA 439843002806 guaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GMP synthase YP_002115573.1 2625890 R 439843 CDS YP_002115574.1 194735799 complement(2627537..2629003) 1 NC_011094.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2629003 guaB 439843002807 guaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. inosine 5'-monophosphate dehydrogenase YP_002115574.1 2627537 R 439843 CDS YP_002115575.1 194736915 2629164..2630513 1 NC_011094.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2630513 xseA 439843002808 xseA Salmonella enterica subsp. enterica serovar Schwarzengrund str. exodeoxyribonuclease VII large subunit YP_002115575.1 2629164 D 439843 CDS YP_002115576.1 194736725 complement(2644077..2649662) 1 NC_011094.1 identified by match to protein family HMM PF05688; match to protein family HMM PF05689; RatB 2649662 439843002811 SeSA_A2751 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RatB YP_002115576.1 2644077 R 439843 CDS YP_002115577.1 194736651 complement(2649800..2650765) 1 NC_011094.1 hypothetical protein 2650765 439843002812 SeSA_A2753 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115577.1 2649800 R 439843 CDS YP_002115578.1 194736638 2650720..2650842 1 NC_011094.1 identified by glimmer; hypothetical protein 2650842 439843002813 SeSA_A2752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115578.1 2650720 D 439843 CDS YP_002115579.1 194735650 complement(2650823..2653015) 1 NC_011094.1 Aec1 2653015 439843002814 SeSA_A2754 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Aec1 YP_002115579.1 2650823 R 439843 CDS YP_002115580.1 194736873 2653016..2653132 1 NC_011094.1 identified by glimmer; hypothetical protein 2653132 439843002815 SeSA_A2755 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115580.1 2653016 D 439843 CDS YP_002115581.1 194737325 complement(2653362..2653583) 1 NC_011094.1 identified by match to protein family HMM PF07191; hypothetical protein 2653583 439843002816 SeSA_A2756 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115581.1 2653362 R 439843 CDS YP_008119788.1 513549406 complement(2653672..2655186) 1 NC_011094.1 GTPase EngA 2655186 engA 439843002817 engA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTPase EngA YP_008119788.1 2653672 R 439843 CDS YP_002115582.1 194734846 complement(2655261..2656439) 1 NC_011094.1 'with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis'; outer membrane protein assembly complex subunit YfgL 2656439 439843002818 SeSA_A2758 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein assembly complex subunit YfgL YP_002115582.1 2655261 R 439843 CDS YP_002115583.1 194735489 complement(2656450..2657070) 1 NC_011094.1 hypothetical protein 2657070 439843002819 SeSA_A2759 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115583.1 2656450 R 439843 CDS YP_002115584.1 194736154 complement(2657084..2658358) 1 NC_011094.1 'catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG'; histidyl-tRNA synthetase 2658358 hisS 439843002820 hisS Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidyl-tRNA synthetase YP_002115584.1 2657084 R 439843 CDS YP_002115585.1 194735499 complement(2658469..2659587) 1 NC_011094.1 'catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis'; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2659587 ispG 439843002822 ispG Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002115585.1 2658469 R 439843 CDS YP_002115586.1 194737551 complement(2659614..2660618) 1 NC_011094.1 identified by match to protein family HMM PF01381; cytoskeletal protein RodZ 2660618 439843002823 SeSA_A2763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytoskeletal protein RodZ YP_002115586.1 2659614 R 439843 CDS YP_002115587.1 194738017 complement(2660911..2662077) 1 NC_011094.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2662077 439843002824 SeSA_A2764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal RNA large subunit methyltransferase N YP_002115587.1 2660911 R 439843 CDS YP_002115588.1 194736317 complement(2662284..2662715) 1 NC_011094.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2662715 ndk 439843002825 ndk Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside diphosphate kinase YP_002115588.1 2662284 R 439843 CDS YP_002115589.1 194738104 complement(2662836..2663699) 1 NC_011094.1 identified by match to protein family HMM PF00037; polyferredoxin 2663699 439843002826 SeSA_A2766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyferredoxin YP_002115589.1 2662836 R 439843 CDS YP_002115590.1 194736248 complement(2663699..2664508) 1 NC_011094.1 anaerobic reductase subunit 2664508 439843002827 SeSA_A2767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic reductase subunit YP_002115590.1 2663699 R 439843 CDS YP_002115591.1 194736835 complement(2664501..2665130) 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 2665130 dmsB 439843002828 dmsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dimethylsulfoxide reductase subunit B YP_002115591.1 2664501 R 439843 CDS YP_002115592.1 194736122 complement(2665127..2667505) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 2667505 439843002829 SeSA_A2769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase subunit A YP_002115592.1 2665127 R 439843 CDS YP_002115593.1 194734438 complement(2667660..2669975) 1 NC_011094.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2669975 pbpC 439843002830 pbpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. penicillin-binding protein 1C YP_002115593.1 2667660 R 439843 CDS YP_002115594.1 194734819 complement(2669976..2674910) 1 NC_011094.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein 2674910 439843002831 SeSA_A2771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115594.1 2669976 R 439843 CDS YP_002115595.1 194736110 2675119..2675961 1 NC_011094.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2675961 sseA 439843002832 sseA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-mercaptopyruvate sulfurtransferase YP_002115595.1 2675119 D 439843 CDS YP_002115596.1 194737460 complement(2675941..2676144) 1 NC_011094.1 identified by glimmer; hypothetical protein 2676144 439843002833 SeSA_A2773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115596.1 2675941 R 439843 CDS YP_002115597.1 194734306 complement(2676530..2677276) 1 NC_011094.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2677276 sseB 439843002835 sseB Salmonella enterica subsp. enterica serovar Schwarzengrund str. enhanced serine sensitivity protein SseB YP_002115597.1 2676530 R 439843 CDS YP_002115598.1 194738288 complement(2677416..2678699) 1 NC_011094.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 2678699 439843002836 SeSA_A2776 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminopeptidase YP_002115598.1 2677416 R 439843 CDS YP_002115599.1 194737775 complement(2678753..2678953) 1 NC_011094.1 identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein 2678953 iscX 439843002837 iscX Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115599.1 2678753 R 439843 CDS YP_002115600.1 194736732 complement(2678965..2679300) 1 NC_011094.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin, 2Fe-2S type, ISC system 2679300 fdx 439843002838 fdx Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin, 2Fe-2S type, ISC system YP_002115600.1 2678965 R 439843 CDS YP_002115601.1 194736280 complement(2679302..2681152) 1 NC_011094.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2681152 hscA 439843002839 hscA Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein HscA YP_002115601.1 2679302 R 439843 CDS YP_002115602.1 194735890 complement(2681165..2681680) 1 NC_011094.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2681680 hscB 439843002840 hscB Salmonella enterica subsp. enterica serovar Schwarzengrund str. co-chaperone HscB YP_002115602.1 2681165 R 439843 CDS YP_002115603.1 194735933 complement(2681876..2682199) 1 NC_011094.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2682199 iscA 439843002841 iscA Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-sulfur cluster assembly protein YP_002115603.1 2681876 R 439843 CDS YP_002115604.1 194735413 complement(2682228..2682614) 1 NC_011094.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 2682614 iscU 439843002842 iscU Salmonella enterica subsp. enterica serovar Schwarzengrund str. scaffold protein YP_002115604.1 2682228 R 439843 CDS YP_002115605.1 194738138 complement(2682642..2683856) 1 NC_011094.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2683856 iscS 439843002843 iscS Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desulfurase YP_002115605.1 2682642 R 439843 CDS YP_002115606.1 194735806 2683909..2684028 1 NC_011094.1 identified by glimmer; hypothetical protein 2684028 439843002844 SeSA_A2784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115606.1 2683909 D 439843 CDS YP_002115607.1 194737710 complement(2684037..2684531) 1 NC_011094.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2684531 iscR 439843002845 iscR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator IscR YP_002115607.1 2684037 R 439843 CDS YP_002115608.1 194736797 complement(2684691..2685422) 1 NC_011094.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 2685422 439843002846 SeSA_A2786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA methyltransferase YP_002115608.1 2684691 R 439843 CDS YP_002115609.1 194734210 2685541..2686344 1 NC_011094.1 identified by match to protein family HMM PF00459; inositol monophosphatase 2686344 suhB 439843002847 suhB Salmonella enterica subsp. enterica serovar Schwarzengrund str. inositol monophosphatase YP_002115609.1 2685541 D 439843 CDS YP_002115610.1 194738389 2686489..2687367 1 NC_011094.1 hypothetical protein 2687367 439843002848 SeSA_A2788 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115610.1 2686489 D 439843 CDS YP_002115611.1 194734676 2687549..2688592 1 NC_011094.1 identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2688592 asrA 439843002849 asrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite reductase subunit A YP_002115611.1 2687549 D 439843 CDS YP_002115612.1 194734871 2688596..2689414 1 NC_011094.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2689414 asrB 439843002850 asrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic sulfite reductase subunit B YP_002115612.1 2688596 D 439843 CDS YP_002115613.1 194735811 2689425..2690438 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2690438 asrC 439843002851 asrC Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite reductase subunit C YP_002115613.1 2689425 D 439843 CDS YP_002115614.1 194735065 complement(2690439..2691425) 1 NC_011094.1 identified by match to protein family HMM PF03824; high-affinity nickel-transporter 2691425 439843002852 SeSA_A2792 Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity nickel-transporter YP_002115614.1 2690439 R 439843 CDS YP_002115615.1 194737019 complement(2691416..2692045) 1 NC_011094.1 identified by match to protein family HMM PF06226; hypothetical protein 2692045 439843002853 SeSA_A2793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115615.1 2691416 R 439843 CDS YP_002115616.1 194737861 2692180..2693457 1 NC_011094.1 identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2693457 439843002854 SeSA_A2794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. stationary phase inducible protein CsiE YP_002115616.1 2692180 D 439843 CDS YP_002115617.1 194734359 complement(2693452..2694591) 1 NC_011094.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 2694591 439843002855 SeSA_A2795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-phenylpropionic acid transporter YP_002115617.1 2693452 R 439843 CDS YP_002115618.1 194735000 complement(2694787..2696040) 1 NC_011094.1 'catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate'; serine hydroxymethyltransferase 2696040 glyA 439843002856 glyA Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine hydroxymethyltransferase YP_002115618.1 2694787 R 439843 CDS YP_002115619.1 194736860 complement(2696178..2696324) 1 NC_011094.1 hypothetical protein 2696324 439843002857 SeSA_A2797 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115619.1 2696178 R 439843 CDS YP_002115620.1 194736279 2696365..2697555 1 NC_011094.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2697555 hmp 439843002858 hmp Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitric oxide dioxygenase YP_002115620.1 2696365 D 439843 CDS YP_002115621.1 194735558 2697737..2699281 1 NC_011094.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2699281 439843002859 SeSA_A2799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator CadC YP_002115621.1 2697737 D 439843 CDS YP_002115622.1 194737156 2699643..2700974 1 NC_011094.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2700974 cadB 439843002860 cadB Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine/cadaverine antiporter YP_002115622.1 2699643 D 439843 CDS YP_002115623.1 194734109 2701057..2703201 1 NC_011094.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2703201 439843002861 SeSA_A2801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine decarboxylase, constitutive YP_002115623.1 2701057 D 439843 CDS YP_002115624.1 194736048 2703257..2704717 1 NC_011094.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2704717 439843002862 SeSA_A2802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transporter YbgH YP_002115624.1 2703257 D 439843 CDS YP_002115625.1 194737302 complement(2704766..2705104) 1 NC_011094.1 'indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA'; nitrogen regulatory protein P-II 1 2705104 439843002863 SeSA_A2803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrogen regulatory protein P-II 1 YP_002115625.1 2704766 R 439843 CDS YP_002115626.1 194734548 complement(2705181..2706518) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulatory protein ZraR 2706518 439843002864 SeSA_A2804 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein ZraR YP_002115626.1 2705181 R 439843 CDS YP_002115627.2 449306313 complement(2706515..2707279) 1 NC_011094.1 hypothetical protein 2707279 439843002865 SeSA_A2805 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115627.2 2706515 R 439843 CDS YP_008119789.1 513549407 complement(2707281..2708666) 1 NC_011094.1 hypothetical protein 2708666 439843002866 SeSA_A2806 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119789.1 2707281 R 439843 CDS YP_002115628.1 194736632 complement(2709360..2713247) 1 NC_011094.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2713247 purL 439843002868 purL Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylformylglycinamidine synthase YP_002115628.1 2709360 R 439843 CDS YP_002115629.1 194737251 2713361..2713498 1 NC_011094.1 hypothetical protein 2713498 439843002869 SeSA_A2809 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115629.1 2713361 D 439843 CDS YP_002115630.1 194735107 2713503..2715047 1 NC_011094.1 'YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function'; transglycosylase 2715047 439843002870 SeSA_A2810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transglycosylase YP_002115630.1 2713503 D 439843 CDS YP_002115631.1 194735718 complement(2715098..2715616) 1 NC_011094.1 identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 2715616 439843002871 SeSA_A2811 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-specific adenosine deaminase YP_002115631.1 2715098 R 439843 CDS YP_002115632.1 194734731 complement(2715674..2716309) 1 NC_011094.1 identified by match to protein family HMM TIGR01545; hypothetical protein 2716309 yfhB 439843002872 yfhB Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115632.1 2715674 R 439843 CDS YP_002115633.1 194735087 complement(2716313..2717674) 1 NC_011094.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; phosphotransferase system, eiic 2717674 439843002873 SeSA_A2813 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase system, eiic YP_002115633.1 2716313 R 439843 CDS YP_002115634.1 194737600 complement(2717685..2718578) 1 NC_011094.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2718578 murQ 439843002874 murQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmuramic acid 6-phosphate etherase YP_002115634.1 2717685 R 439843 CDS YP_002115635.1 194737916 2718694..2719542 1 NC_011094.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2719542 439843002875 SeSA_A2815 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002115635.1 2718694 D 439843 CDS YP_002115636.1 194734473 complement(2719581..2720498) 1 NC_011094.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2720498 panE 439843002876 panE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-dehydropantoate 2-reductase YP_002115636.1 2719581 R 439843 CDS YP_002115637.1 194734416 complement(2720520..2721716) 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 2721716 439843002877 SeSA_A2817 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator family transporter protein YP_002115637.1 2720520 R 439843 CDS YP_002115638.1 194735984 2721832..2722758 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2722758 439843002878 SeSA_A2818 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002115638.1 2721832 D 439843 CDS YP_002115639.1 194735481 2722796..2723056 1 NC_011094.1 identified by match to protein family HMM PF00037; ferredoxin 2723056 439843002879 SeSA_A2819 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin YP_002115639.1 2722796 D 439843 CDS YP_002115640.1 194736562 complement(2723168..2723548) 1 NC_011094.1 'Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids'; 4'-phosphopantetheinyl transferase 2723548 acpS 439843002880 acpS Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4'-phosphopantetheinyl transferase YP_002115640.1 2723168 R 439843 CDS YP_002115641.1 194736368 complement(2723548..2724279) 1 NC_011094.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2724279 pdxJ 439843002881 pdxJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxine 5'-phosphate synthase YP_002115641.1 2723548 R 439843 CDS YP_002115642.1 194738093 complement(2724291..2725019) 1 NC_011094.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2725019 recO 439843002882 recO Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA repair protein RecO YP_002115642.1 2724291 R 439843 CDS YP_002115643.1 194737392 complement(2725031..2725936) 1 NC_011094.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2725936 era 439843002883 era Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP-binding protein Era YP_002115643.1 2725031 R 439843 CDS YP_002115644.1 194733998 complement(2725933..2726670) 1 NC_011094.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2726670 rnc 439843002884 rnc Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease III YP_002115644.1 2725933 R 439843 CDS YP_002115645.1 194737191 complement(2726887..2727861) 1 NC_011094.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2727861 lepB 439843002885 lepB Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal peptidase I YP_002115645.1 2726887 R 439843 CDS YP_002115646.1 194735591 complement(2727878..2729677) 1 NC_011094.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2729677 lepA 439843002886 lepA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP-binding protein LepA YP_002115646.1 2727878 R 439843 CDS YP_002115647.1 194736667 2729649..2729786 1 NC_011094.1 identified by glimmer; hypothetical protein 2729786 439843002887 SeSA_A2827 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115647.1 2729649 D 439843 CDS YP_002115648.1 194737011 complement(2729929..2730408) 1 NC_011094.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2730408 439843002888 SeSA_A2829 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SoxR reducing system protein RseC YP_002115648.1 2729929 R 439843 CDS YP_002115649.1 194737636 complement(2730405..2731361) 1 NC_011094.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2731361 rseB 439843002889 rseB Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic negative regulator of sigmaE YP_002115649.1 2730405 R 439843 CDS YP_002115650.1 194737444 complement(2731361..2732011) 1 NC_011094.1 identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE 2732011 rseA 439843002890 rseA Salmonella enterica subsp. enterica serovar Schwarzengrund str. anti-RNA polymerase sigma factor SigE YP_002115650.1 2731361 R 439843 CDS YP_002115651.1 194734092 complement(2732043..2732618) 1 NC_011094.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2732618 rpoE 439843002891 rpoE Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase sigma factor RpoE YP_002115651.1 2732043 R 439843 CDS YP_002115652.1 194734721 complement(2732779..2732958) 1 NC_011094.1 identified by glimmer; hypothetical protein 2732958 439843002892 SeSA_A2833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115652.1 2732779 R 439843 CDS YP_002115653.1 194735715 2733043..2734665 1 NC_011094.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2734665 nadB 439843002893 nadB Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-aspartate oxidase YP_002115653.1 2733043 D 439843 CDS YP_008119790.1 513549408 complement(2734650..2735309) 1 NC_011094.1 methyltransferase 2735309 439843002894 SeSA_A2835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_008119790.1 2734650 R 439843 CDS YP_002115655.1 194736243 2735517..2736851 1 NC_011094.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2736851 439843002895 SeSA_A2837 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase SrmB YP_002115655.1 2735517 D 439843 CDS YP_002115656.1 194737605 complement(2736869..2737768) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2737768 439843002896 SeSA_A2838 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002115656.1 2736869 R 439843 CDS YP_002115657.1 194737534 2737871..2738458 1 NC_011094.1 identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2738458 439843002897 SeSA_A2839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. neutral amino-acid efflux protein YP_002115657.1 2737871 D 439843 CDS YP_002115658.1 194734376 complement(2738520..2738903) 1 NC_011094.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2738903 grcA 439843002898 grcA Salmonella enterica subsp. enterica serovar Schwarzengrund str. autonomous glycyl radical cofactor GrcA YP_002115658.1 2738520 R 439843 CDS YP_002115659.1 194738255 2739222..2739911 1 NC_011094.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2739911 ung 439843002899 ung Salmonella enterica subsp. enterica serovar Schwarzengrund str. uracil-DNA glycosylase YP_002115659.1 2739222 D 439843 CDS YP_002115660.1 194735064 complement(2740027..2741064) 1 NC_011094.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase 2741064 439843002900 SeSA_A2842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002115660.1 2740027 R 439843 CDS YP_002115661.1 194734992 2741268..2741687 1 NC_011094.1 identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2741687 439843002901 SeSA_A2843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioredoxin 2 YP_002115661.1 2741268 D 439843 CDS YP_002115662.1 194736464 2741760..2742440 1 NC_011094.1 identified by match to protein family HMM PF03942; DTW domain-containing protein 2742440 439843002902 SeSA_A2844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DTW domain-containing protein YP_002115662.1 2741760 D 439843 CDS YP_002115663.1 194735388 2742494..2745154 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA binding domain/acetyltransferase domain-containing protein 2745154 439843002903 SeSA_A2845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CoA binding domain/acetyltransferase domain-containing protein YP_002115663.1 2742494 D 439843 CDS YP_002115664.1 194736028 2745269..2746624 1 NC_011094.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2746624 pssA 439843002904 pssA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatidylserine synthase YP_002115664.1 2745269 D 439843 CDS YP_002115665.1 194735026 2746669..2746992 1 NC_011094.1 hypothetical protein 2746992 439843002905 SeSA_A2847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115665.1 2746669 D 439843 CDS YP_002115666.1 194735580 complement(2746989..2748290) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter 2748290 439843002906 SeSA_A2848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-ketoglutarate transporter YP_002115666.1 2746989 R 439843 CDS YP_002115667.1 194734377 complement(2748394..2748849) 1 NC_011094.1 hypothetical protein 2748849 439843002907 SeSA_A2849 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115667.1 2748394 R 439843 CDS YP_002115668.1 194737862 2749211..2749369 1 NC_011094.1 identified by glimmer; hypothetical protein 2749369 439843002909 SeSA_A2850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115668.1 2749211 D 439843 CDS YP_002115669.1 194737527 complement(2750473..2750592) 1 NC_011094.1 hypothetical protein 2750592 439843002910 SeSA_A2852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115669.1 2750473 R 439843 CDS YP_002115670.1 194736907 2754662..2754778 1 NC_011094.1 identified by glimmer; hypothetical protein 2754778 439843002913 SeSA_A2855 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115670.1 2754662 D 439843 CDS YP_002115671.1 194736447 complement(2754780..2757353) 1 NC_011094.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; protein disaggregation chaperone 2757353 clpB 439843002914 clpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein disaggregation chaperone YP_002115671.1 2754780 R 439843 CDS YP_002115672.1 194735394 complement(2757483..2758214) 1 NC_011094.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 2758214 439843002915 SeSA_A2857 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115672.1 2757483 R 439843 CDS YP_002115673.1 194737121 complement(2758211..2759191) 1 NC_011094.1 'responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA'; 23S rRNA pseudouridine synthase D 2759191 rluD 439843002916 rluD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA pseudouridine synthase D YP_002115673.1 2758211 R 439843 CDS YP_002115674.1 194736160 2759323..2760060 1 NC_011094.1 'with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline'; outer membrane protein assembly complex subunit YfiO 2760060 439843002917 SeSA_A2859 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein assembly complex subunit YfiO YP_002115674.1 2759323 D 439843 CDS YP_002115675.1 194735943 2760332..2760670 1 NC_011094.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2760670 439843002918 SeSA_A2860 Salmonella enterica subsp. enterica serovar Schwarzengrund str. translation inhibitor protein RaiA YP_002115675.1 2760332 D 439843 CDS YP_002115676.1 194735195 2760921..2762081 1 NC_011094.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2762081 pheA 439843002919 pheA Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional chorismate mutase/prephenate dehydratase YP_002115676.1 2760921 D 439843 CDS YP_002115677.1 194735844 complement(2762042..2762950) 1 NC_011094.1 identified by match to protein family HMM PF08450; SMP-30/gluconolaconase/LRE domain-containing protein 2762950 439843002920 SeSA_A2862 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SMP-30/gluconolaconase/LRE domain-containing protein YP_002115677.1 2762042 R 439843 CDS YP_002115678.1 194736824 complement(2763008..2764129) 1 NC_011094.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2764129 tyrA 439843002921 tyrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional chorismate mutase/prephenate dehydrogenase YP_002115678.1 2763008 R 439843 CDS YP_002115679.1 194737940 complement(2764139..2765209) 1 NC_011094.1 'catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive'; phospho-2-dehydro-3-deoxyheptonate aldolase 2765209 aroF 439843002922 aroF Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospho-2-dehydro-3-deoxyheptonate aldolase YP_002115679.1 2764139 R 439843 CDS YP_002115680.1 194737830 complement(2765384..2765497) 1 NC_011094.1 identified by glimmer; hypothetical protein 2765497 439843002923 SeSA_A2865 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115680.1 2765384 R 439843 CDS YP_002115681.1 194734937 2765649..2766167 1 NC_011094.1 hypothetical protein 2766167 439843002924 SeSA_A2866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115681.1 2765649 D 439843 CDS YP_002115682.2 449306314 2766160..2767380 1 NC_011094.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2767380 439843002925 SeSA_A2867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115682.2 2766160 D 439843 CDS YP_002115683.1 194734223 complement(2767537..2767884) 1 NC_011094.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2767884 rplS 439843002926 rplS Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L19 YP_002115683.1 2767537 R 439843 CDS YP_002115684.1 194738207 complement(2767925..2768692) 1 NC_011094.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2768692 trmD 439843002927 trmD Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA (guanine-N(1)-)-methyltransferase YP_002115684.1 2767925 R 439843 CDS YP_002115685.1 194735018 complement(2768737..2769288) 1 NC_011094.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2769288 rimM 439843002928 rimM Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S rRNA-processing protein RimM YP_002115685.1 2768737 R 439843 CDS YP_002115686.1 194735365 complement(2769304..2769552) 1 NC_011094.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2769552 rpsP 439843002929 rpsP Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S16 YP_002115686.1 2769304 R 439843 CDS YP_002115687.1 194735746 complement(2769609..2769755) 1 NC_011094.1 identified by glimmer; hypothetical protein 2769755 439843002930 SeSA_A2872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115687.1 2769609 R 439843 CDS YP_002115688.1 194736625 complement(2769805..2771166) 1 NC_011094.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2771166 ffh 439843002931 ffh Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal recognition particle protein YP_002115688.1 2769805 R 439843 CDS YP_008119791.1 513549409 2771332..2772123 1 NC_011094.1 hypothetical protein 2772123 439843002932 SeSA_A2874 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119791.1 2771332 D 439843 CDS YP_002115689.1 194736792 2772188..2773429 1 NC_011094.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2773429 439843002933 SeSA_A2875 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115689.1 2772188 D 439843 CDS YP_002115690.1 194737489 2773550..2774155 1 NC_011094.1 hypothetical protein 2774155 439843002934 SeSA_A2876 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115690.1 2773550 D 439843 CDS YP_002115691.1 194738082 complement(2774190..2774780) 1 NC_011094.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2774780 grpE 439843002935 grpE Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein GrpE YP_002115691.1 2774190 R 439843 CDS YP_002115692.1 194735491 2774903..2775781 1 NC_011094.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2775781 ppnK 439843002936 ppnK Salmonella enterica subsp. enterica serovar Schwarzengrund str. inorganic polyphosphate/ATP-NAD kinase YP_002115692.1 2774903 D 439843 CDS YP_002115693.1 194737809 2775867..2777528 1 NC_011094.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2777528 recN 439843002937 recN Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination and repair protein YP_002115693.1 2775867 D 439843 CDS YP_002115694.1 194737236 2777677..2778015 1 NC_011094.1 identified by match to protein family HMM PF04355; hypothetical protein 2778015 439843002938 SeSA_A2880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115694.1 2777677 D 439843 CDS YP_002115695.1 194735368 complement(2778177..2778467) 1 NC_011094.1 identified by match to protein family HMM PF03658; hypothetical protein 2778467 439843002939 SeSA_A2881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115695.1 2778177 R 439843 CDS YP_002115696.1 194735695 complement(2778457..2778933) 1 NC_011094.1 identified by match to protein family HMM PF03364; hypothetical protein 2778933 439843002940 SeSA_A2882 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115696.1 2778457 R 439843 CDS YP_002115697.1 194734381 2779083..2779565 1 NC_011094.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein 2779565 smpB 439843002941 smpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ssrA-binding protein YP_002115697.1 2779083 D 439843 CDS YP_002115698.1 194734684 complement(2779612..2779728) 1 NC_011094.1 identified by glimmer; hypothetical protein 2779728 439843002942 SeSA_A2884 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115698.1 2779612 R 439843 CDS YP_002115699.1 194737528 complement(2779712..2779864) 1 NC_011094.1 identified by glimmer; hypothetical protein 2779864 439843002943 SeSA_A2885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115699.1 2779712 R 439843 CDS YP_002115700.1 194737591 2780180..2791654 1 NC_011094.1 identified by match to protein family HMM TIGR01965; hypothetical protein 2791654 439843002944 SeSA_A2886 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115700.1 2780180 D 439843 CDS YP_002115701.1 194738230 2791719..2793128 1 NC_011094.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein, TolC family protein 2793128 439843002945 SeSA_A2887 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type I secretion outer membrane protein, TolC family protein YP_002115701.1 2791719 D 439843 CDS YP_002115702.1 194735340 2793125..2795305 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR03375; protein secretion ABC efflux system, permease and ATP-binding protein 2795305 439843002946 SeSA_A2888 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein secretion ABC efflux system, permease and ATP-binding protein YP_002115702.1 2793125 D 439843 CDS YP_002115703.1 194735786 2795286..2796476 1 NC_011094.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein, HlyD family protein 2796476 439843002947 SeSA_A2889 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type I secretion membrane fusion protein, HlyD family protein YP_002115703.1 2795286 D 439843 CDS YP_002115704.1 194736662 2797034..2798305 1 NC_011094.1 identified by match to protein family HMM PF00589; phage integrase family protein 2798305 439843002949 SeSA_A2892 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage integrase family protein YP_002115704.1 2797034 D 439843 CDS YP_002115705.1 194737151 complement(2798975..2800318) 1 NC_011094.1 identified by glimmer; hypothetical protein 2800318 439843002950 SeSA_A2893 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115705.1 2798975 R 439843 CDS YP_002115706.1 194735252 complement(2800940..2804758) 1 NC_011094.1 identified by glimmer; hypothetical protein 2804758 439843002951 SeSA_A2894 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115706.1 2800940 R 439843 CDS YP_002115707.1 194735655 complement(2805837..2805980) 1 NC_011094.1 identified by glimmer; hypothetical protein 2805980 439843002952 SeSA_A2895 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115707.1 2805837 R 439843 CDS YP_002115708.1 194734002 2806413..2807360 1 NC_011094.1 hypothetical protein 2807360 439843002953 SeSA_A2896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115708.1 2806413 D 439843 CDS YP_002115709.1 194735532 2807754..2807978 1 NC_011094.1 hypothetical protein 2807978 439843002954 SeSA_A2897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115709.1 2807754 D 439843 CDS YP_002115710.1 194738172 2807975..2809216 1 NC_011094.1 identified by match to protein family HMM PF03432; relaxase/mobilization nuclease domain-containing protein 2809216 439843002955 SeSA_A2898 Salmonella enterica subsp. enterica serovar Schwarzengrund str. relaxase/mobilization nuclease domain-containing protein YP_002115710.1 2807975 D 439843 CDS YP_002115711.1 194734209 2809397..2809669 1 NC_011094.1 hypothetical protein 2809669 439843002956 SeSA_A2899 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115711.1 2809397 D 439843 CDS YP_002115712.1 194737164 2809711..2810097 1 NC_011094.1 hypothetical protein 2810097 439843002957 SeSA_A2900 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115712.1 2809711 D 439843 CDS YP_002115713.1 194736383 2810127..2810447 1 NC_011094.1 hypothetical protein 2810447 439843002958 SeSA_A2901 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115713.1 2810127 D 439843 CDS YP_002115714.1 194737934 complement(2810601..2811023) 1 NC_011094.1 hypothetical protein 2811023 439843002959 SeSA_A2902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115714.1 2810601 R 439843 CDS YP_002115715.1 194737309 2811775..2811900 1 NC_011094.1 identified by glimmer; hypothetical protein 2811900 439843002960 SeSA_A2903 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115715.1 2811775 D 439843 CDS YP_002115716.1 194736898 2811947..2812510 1 NC_011094.1 hypothetical protein 2812510 439843002961 SeSA_A2904 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115716.1 2811947 D 439843 CDS YP_002115717.1 194736336 2812534..2812911 1 NC_011094.1 identified by glimmer; hypothetical protein 2812911 439843002962 SeSA_A2905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115717.1 2812534 D 439843 CDS YP_002115718.1 194736072 complement(2813037..2813345) 1 NC_011094.1 hypothetical protein 2813345 439843002963 SeSA_A2906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115718.1 2813037 R 439843 CDS YP_002115719.1 194735456 complement(2813361..2813570) 1 NC_011094.1 identified by match to protein family HMM PF05930; hypothetical protein 2813570 439843002964 SeSA_A2907 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115719.1 2813361 R 439843 CDS YP_002115720.1 194733916 complement(2813693..2814544) 1 NC_011094.1 hypothetical protein 2814544 439843002965 SeSA_A2908 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115720.1 2813693 R 439843 CDS YP_002115721.1 194734433 2814885..2816159 1 NC_011094.1 identified by match to protein family HMM PF00078; phage-related reverse transcriptase/maturase family protein 2816159 439843002966 SeSA_A2909 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage-related reverse transcriptase/maturase family protein YP_002115721.1 2814885 D 439843 CDS YP_002115722.1 194737442 2816150..2818162 1 NC_011094.1 hypothetical protein 2818162 439843002967 SeSA_A2910 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115722.1 2816150 D 439843 CDS YP_002115723.2 449306315 complement(2819742..2820281) 1 NC_011094.1 repressor of phase 1 flagellin gene 2820281 439843002968 SeSA_A2911 Salmonella enterica subsp. enterica serovar Schwarzengrund str. repressor of phase 1 flagellin gene YP_002115723.2 2819742 R 439843 CDS YP_002115724.1 194735300 complement(2820349..2821869) 1 NC_011094.1 'structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes'; flagellin 2821869 439843002969 SeSA_A2912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flagellin YP_002115724.1 2820349 R 439843 CDS YP_002115725.1 194734526 2821961..2822533 1 NC_011094.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; DNA-invertase hin 2822533 439843002970 SeSA_A2913 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-invertase hin YP_002115725.1 2821961 D 439843 CDS YP_002115726.1 194738140 2823209..2823391 1 NC_011094.1 hypothetical protein 2823391 439843002971 SeSA_A2914 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115726.1 2823209 D 439843 CDS YP_002115727.1 194738018 2823496..2824611 1 NC_011094.1 identified by match to protein family HMM PF06722; protein IroB 2824611 439843002972 SeSA_A2915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein IroB YP_002115727.1 2823496 D 439843 CDS YP_002115728.1 194737835 2824692..2828348 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP-binding protein 2828348 439843002973 SeSA_A2916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-binding protein YP_002115728.1 2824692 D 439843 CDS YP_002115729.1 194737015 2828458..2829702 1 NC_011094.1 identified by match to protein family HMM PF00756; enterochelin esterase 2829702 439843002974 SeSA_A2917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. enterochelin esterase YP_002115729.1 2828458 D 439843 CDS YP_002115730.1 194736307 2829734..2830669 1 NC_011094.1 IroE 2830669 439843002975 SeSA_A2918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IroE YP_002115730.1 2829734 D 439843 CDS YP_002115731.1 194736057 complement(2830711..2832885) 1 NC_011094.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2832885 439843002976 SeSA_A2919 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane receptor FepA YP_002115731.1 2830711 R 439843 CDS YP_002115732.1 194734353 complement(2833929..2835029) 1 NC_011094.1 identified by match to protein family HMM PF00805; effector protein pipB2 2835029 439843002977 SeSA_A2921 Salmonella enterica subsp. enterica serovar Schwarzengrund str. effector protein pipB2 YP_002115732.1 2833929 R 439843 CDS YP_002115733.1 194736001 2835499..2836428 1 NC_011094.1 identified by match to protein family HMM PF04393; hypothetical protein 2836428 439843002978 SeSA_A2922 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115733.1 2835499 D 439843 CDS YP_002115734.1 194735357 2836528..2836725 1 NC_011094.1 identified by glimmer; hypothetical protein 2836725 439843002979 SeSA_A2923 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115734.1 2836528 D 439843 CDS YP_002115735.1 194734825 2836722..2837618 1 NC_011094.1 identified by match to protein family HMM PF07395; hypothetical protein 2837618 439843002980 SeSA_A2924 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115735.1 2836722 D 439843 CDS YP_002115736.1 194734435 2838134..2838247 1 NC_011094.1 hypothetical protein 2838247 439843002981 SeSA_A2925 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115736.1 2838134 D 439843 CDS YP_002115737.1 194734446 complement(2838340..2839353) 1 NC_011094.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein 2839353 hoxN 439843002982 hoxN Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity nickel transport protein YP_002115737.1 2838340 R 439843 CDS YP_002115738.1 194737888 complement(2839486..2840901) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transport: regulatory protein 2840901 439843002983 SeSA_A2927 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tricarboxylic transport: regulatory protein YP_002115738.1 2839486 R 439843 CDS YP_002115739.1 194737394 complement(2840888..2841562) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein TctD 2841562 439843002984 SeSA_A2928 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein TctD YP_002115739.1 2840888 R 439843 CDS YP_002115740.1 194736861 2841601..2841720 1 NC_011094.1 hypothetical protein 2841720 439843002985 SeSA_A2929 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115740.1 2841601 D 439843 CDS YP_002115741.1 194736866 2841717..2842694 1 NC_011094.1 identified by match to protein family HMM PF03401; tricarboxylic transport 2842694 439843002986 SeSA_A2930 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tricarboxylic transport YP_002115741.1 2841717 D 439843 CDS YP_002115742.1 194737457 2842709..2843140 1 NC_011094.1 tricarboxylic transport 2843140 439843002987 SeSA_A2931 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tricarboxylic transport YP_002115742.1 2842709 D 439843 CDS YP_002115743.1 194734945 2843151..2844665 1 NC_011094.1 identified by match to protein family HMM PF01970; hypothetical protein 2844665 439843002988 SeSA_A2932 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115743.1 2843151 D 439843 CDS YP_008119792.1 513549410 2844967..2845944 1 NC_011094.1 hypothetical protein 2845944 439843002989 SeSA_A2933 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119792.1 2844967 D 439843 CDS YP_002115744.1 194737869 2845970..2847238 1 NC_011094.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2847238 439843002990 SeSA_A2934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydroxyglutarate oxidase YP_002115744.1 2845970 D 439843 CDS YP_002115745.1 194736886 2848722..2850005 1 NC_011094.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2850005 gabT 439843002992 gabT Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-aminobutyrate aminotransferase YP_002115745.1 2848722 D 439843 CDS YP_002115746.1 194736084 2850136..2851536 1 NC_011094.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2851536 gabP 439843002993 gabP Salmonella enterica subsp. enterica serovar Schwarzengrund str. gamma-aminobutyrate transporter YP_002115746.1 2850136 D 439843 CDS YP_002115747.1 194736700 2851578..2852255 1 NC_011094.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2852255 439843002994 SeSA_A2939 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator CsiR YP_002115747.1 2851578 D 439843 CDS YP_002115748.1 194735575 complement(2852277..2852726) 1 NC_011094.1 identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein 2852726 439843002995 SeSA_A2940 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysM domain/BON superfamily protein YP_002115748.1 2852277 R 439843 CDS YP_002115749.1 194734960 complement(2852826..2852984) 1 NC_011094.1 identified by match to protein family HMM PF01679; hypothetical protein 2852984 439843002996 SeSA_A2941 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115749.1 2852826 R 439843 CDS YP_002115750.1 194735773 2853167..2853466 1 NC_011094.1 identified by match to protein family HMM PF01022; regulatory protein ArsR 2853466 439843002997 SeSA_A2942 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein ArsR YP_002115750.1 2853167 D 439843 CDS YP_002115751.1 194736003 2853476..2854003 1 NC_011094.1 identified by match to protein family HMM PF00581; hypothetical protein 2854003 439843002998 SeSA_A2943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115751.1 2853476 D 439843 CDS YP_002115752.1 194734196 2854082..2854261 1 NC_011094.1 hypothetical protein 2854261 439843002999 SeSA_A2944 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115752.1 2854082 D 439843 CDS YP_002115753.1 194734947 complement(2854351..2854752) 1 NC_011094.1 identified by match to protein family HMM PF00816; DNA binding protein, nucleoid-associated 2854752 439843003000 SeSA_A2945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA binding protein, nucleoid-associated YP_002115753.1 2854351 R 439843 CDS YP_002115754.1 194738276 2855318..2855437 1 NC_011094.1 identified by glimmer; hypothetical protein 2855437 439843003001 SeSA_A2946 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115754.1 2855318 D 439843 CDS YP_002115755.1 194733982 2855652..2856101 1 NC_011094.1 identified by match to protein family HMM PF06610; hypothetical protein 2856101 439843003002 SeSA_A2947 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115755.1 2855652 D 439843 CDS YP_002115756.1 194736790 complement(2856136..2856486) 1 NC_011094.1 identified by match to protein family HMM PF09400; hypothetical protein 2856486 439843003003 SeSA_A2948 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115756.1 2856136 R 439843 CDS YP_002115757.1 194737535 2856648..2856974 1 NC_011094.1 identified by match to protein family HMM PF05957; hypothetical protein 2856974 439843003004 SeSA_A2949 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115757.1 2856648 D 439843 CDS YP_002115758.1 194735993 complement(2857058..2858392) 1 NC_011094.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; transcriptional regulator, GntR family with aminotransferase domain 2858392 439843003005 SeSA_A2950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, GntR family with aminotransferase domain YP_002115758.1 2857058 R 439843 CDS YP_002115759.1 194735524 2858478..2858912 1 NC_011094.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 2858912 439843003006 SeSA_A2951 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alkylhydroperoxidase YP_002115759.1 2858478 D 439843 CDS YP_002115760.1 194734818 2858927..2859085 1 NC_011094.1 hypothetical protein 2859085 439843003007 SeSA_A2952 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115760.1 2858927 D 439843 CDS YP_002115761.1 194734445 2859184..2859429 1 NC_011094.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2859429 439843003008 SeSA_A2953 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaredoxin-like protein YP_002115761.1 2859184 D 439843 CDS YP_002115762.1 194738058 2859426..2859836 1 NC_011094.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2859836 nrdI 439843003009 nrdI Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleotide reductase stimulatory protein YP_002115762.1 2859426 D 439843 CDS YP_002115763.1 194737455 2859809..2861953 1 NC_011094.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2861953 439843003010 SeSA_A2955 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleotide-diphosphate reductase subunit alpha YP_002115763.1 2859809 D 439843 CDS YP_002115764.1 194737146 2861964..2862923 1 NC_011094.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2862923 nrdF 439843003011 nrdF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonucleotide-diphosphate reductase subunit beta YP_002115764.1 2861964 D 439843 CDS YP_002115765.1 194736663 2863278..2864480 1 NC_011094.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2864480 proV 439843003012 proV Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine betaine transporter ATP-binding subunit YP_002115765.1 2863278 D 439843 CDS YP_002115766.1 194733925 2864473..2865537 1 NC_011094.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2865537 439843003013 SeSA_A2958 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine betaine transporter membrane protein YP_002115766.1 2864473 D 439843 CDS YP_002115767.1 194735674 2865607..2866602 1 NC_011094.1 'with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine'; glycine betaine transporter periplasmic subunit 2866602 proX 439843003014 proX Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine betaine transporter periplasmic subunit YP_002115767.1 2865607 D 439843 CDS YP_002115768.1 194737719 2866767..2867951 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 2867951 439843003015 SeSA_A2960 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator family transporter protein YP_002115768.1 2866767 D 439843 CDS YP_002115769.1 194734187 2868448..2868978 1 NC_011094.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2868978 mprA 439843003016 mprA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional repressor MprA YP_002115769.1 2868448 D 439843 CDS YP_002115770.1 194737453 2869105..2870277 1 NC_011094.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 2870277 emrA 439843003017 emrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein A YP_002115770.1 2869105 D 439843 CDS YP_002115771.1 194738054 2870294..2871832 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 2871832 emrB 439843003018 emrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein B YP_002115771.1 2870294 D 439843 CDS YP_002115772.1 194738374 complement(2871881..2873251) 1 NC_011094.1 glycoporin 2873251 439843003019 SeSA_A2964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycoporin YP_002115772.1 2871881 R 439843 CDS YP_002115773.1 194736834 2873396..2873539 1 NC_011094.1 hypothetical protein 2873539 439843003020 SeSA_A2965 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115773.1 2873396 D 439843 CDS YP_002115774.1 194738022 complement(2873597..2874112) 1 NC_011094.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2874112 luxS 439843003021 luxS Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-ribosylhomocysteinase YP_002115774.1 2873597 R 439843 CDS YP_002115775.1 194737520 complement(2874262..2875818) 1 NC_011094.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2875818 gshA 439843003023 gshA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate--cysteine ligase YP_002115775.1 2874262 R 439843 CDS YP_002115776.1 194736761 complement(2875895..2876320) 1 NC_011094.1 hypothetical protein 2876320 439843003024 SeSA_A2969 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115776.1 2875895 R 439843 CDS YP_002115777.2 449306316 complement(2876317..2876883) 1 NC_011094.1 'YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent'; fructose-1-phosphatase 2876883 439843003025 SeSA_A2970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-1-phosphatase YP_002115777.2 2876317 R 439843 CDS YP_002115778.1 194734626 complement(2878145..2878330) 1 NC_011094.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2878330 csrA 439843003032 csrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbon storage regulator YP_002115778.1 2878145 R 439843 CDS YP_002115779.1 194737652 complement(2878565..2881195) 1 NC_011094.1 'Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; alanyl-tRNA synthetase 2881195 alaS 439843003033 alaS Salmonella enterica subsp. enterica serovar Schwarzengrund str. alanyl-tRNA synthetase YP_002115779.1 2878565 R 439843 CDS YP_002115780.1 194738077 complement(2881431..2881931) 1 NC_011094.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2881931 recX 439843003034 recX Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination regulator RecX YP_002115780.1 2881431 R 439843 CDS YP_002115781.1 194736708 complement(2882048..2883109) 1 NC_011094.1 'catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs'; recombinase A 2883109 recA 439843003035 recA Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombinase A YP_002115781.1 2882048 R 439843 CDS YP_002115782.1 194737208 complement(2883194..2883691) 1 NC_011094.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 2883691 439843003036 SeSA_A2981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. competence damage-inducible protein A YP_002115782.1 2883194 R 439843 CDS YP_002115783.1 194736811 complement(2884169..2885248) 1 NC_011094.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2885248 mltB 439843003037 mltB Salmonella enterica subsp. enterica serovar Schwarzengrund str. murein hydrolase B YP_002115783.1 2884169 R 439843 CDS YP_002115784.1 194735062 2885501..2886064 1 NC_011094.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; glucitol/sorbitol permease iic component 2886064 439843003038 SeSA_A2983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucitol/sorbitol permease iic component YP_002115784.1 2885501 D 439843 CDS YP_002115785.1 194735999 2886061..2887032 1 NC_011094.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; glucitol/sorbitol-specific phosphotransferase enzyme iib component 2887032 439843003039 SeSA_A2984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucitol/sorbitol-specific phosphotransferase enzyme iib component YP_002115785.1 2886061 D 439843 CDS YP_002115786.1 194734170 2887044..2887406 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2887406 439843003040 SeSA_A2985 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system glucitol/sorbitol-specific transporter subunit IIA YP_002115786.1 2887044 D 439843 CDS YP_002115787.1 194734998 2887418..2888197 1 NC_011094.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2888197 srlD 439843003041 srlD Salmonella enterica subsp. enterica serovar Schwarzengrund str. sorbitol-6-phosphate dehydrogenase YP_002115787.1 2887418 D 439843 CDS YP_002115788.1 194733985 2888274..2888633 1 NC_011094.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2888633 439843003042 SeSA_A2987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator GutM YP_002115788.1 2888274 D 439843 CDS YP_002115789.1 194737783 2888831..2889604 1 NC_011094.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2889604 srlR 439843003043 srlR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor SrlR YP_002115789.1 2888831 D 439843 CDS YP_002115790.1 194735521 2889597..2890562 1 NC_011094.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2890562 gutQ 439843003044 gutQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-arabinose 5-phosphate isomerase YP_002115790.1 2889597 D 439843 CDS YP_002115791.1 194737303 complement(2890559..2892079) 1 NC_011094.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2892079 439843003045 SeSA_A2990 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic nitric oxide reductase transcriptional regulator YP_002115791.1 2890559 R 439843 CDS YP_002115792.1 194736009 2892265..2893704 1 NC_011094.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2893704 439843003046 SeSA_A2991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic nitric oxide reductase flavorubredoxin YP_002115792.1 2892265 D 439843 CDS YP_002115793.1 194735906 2893701..2894834 1 NC_011094.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2894834 439843003047 SeSA_A2992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitric oxide reductase YP_002115793.1 2893701 D 439843 CDS YP_002115794.1 194735422 complement(2894931..2897171) 1 NC_011094.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 2897171 hypF 439843003048 hypF Salmonella enterica subsp. enterica serovar Schwarzengrund str. [NiFe] hydrogenase maturation protein HypF YP_002115794.1 2894931 R 439843 CDS YP_002115795.1 194734890 complement(2897317..2897862) 1 NC_011094.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 2897862 439843003049 SeSA_A2994 Salmonella enterica subsp. enterica serovar Schwarzengrund str. electron transport protein HydN YP_002115795.1 2897317 R 439843 CDS YP_002115796.1 194734409 complement(2897831..2897965) 1 NC_011094.1 hypothetical protein 2897965 439843003050 SeSA_A2995 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115796.1 2897831 R 439843 CDS YP_002115797.1 194733924 complement(2898063..2898872) 1 NC_011094.1 hypothetical protein 2898872 439843003051 SeSA_A2996 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115797.1 2898063 R 439843 CDS YP_002115798.1 194735376 complement(2898899..2899369) 1 NC_011094.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 2899369 hycI 439843003052 hycI Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 3 maturation protease YP_002115798.1 2898899 R 439843 CDS YP_002115799.1 194734875 complement(2899362..2899772) 1 NC_011094.1 identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein 2899772 439843003053 SeSA_A2998 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase maturation protein YP_002115799.1 2899362 R 439843 CDS YP_002115800.1 194734314 complement(2899769..2900536) 1 NC_011094.1 identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G 2900536 hycG 439843003054 hycG Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase subunit G YP_002115800.1 2899769 R 439843 CDS YP_002115801.1 194738376 complement(2900536..2901078) 1 NC_011094.1 'electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate'; formate hydrogenlyase complex iron-sulfur subunit 2901078 hycF 439843003055 hycF Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase complex iron-sulfur subunit YP_002115801.1 2900536 R 439843 CDS YP_002115802.1 194737308 complement(2901088..2902797) 1 NC_011094.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E 2902797 hycE 439843003056 hycE Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase subunit E YP_002115802.1 2901088 R 439843 CDS YP_002115803.1 194736897 complement(2902815..2903738) 1 NC_011094.1 identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D 2903738 hycD 439843003057 hycD Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase subunit D YP_002115803.1 2902815 R 439843 CDS YP_002115804.1 194736463 complement(2903741..2905567) 1 NC_011094.1 'catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)'; formate hydrogenlyase subunit 3 2905567 hycC 439843003058 hycC Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase subunit 3 YP_002115804.1 2903741 R 439843 CDS YP_002115805.1 194735766 complement(2905567..2906175) 1 NC_011094.1 identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B 2906175 hycB 439843003059 hycB Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase subunit B YP_002115805.1 2905567 R 439843 CDS YP_002115806.1 194735393 complement(2906197..2906310) 1 NC_011094.1 identified by glimmer; hypothetical protein 2906310 439843003060 SeSA_A3005 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115806.1 2906197 R 439843 CDS YP_002115807.1 194735010 complement(2906321..2906782) 1 NC_011094.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 2906782 439843003061 SeSA_A3006 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase regulatory protein HycA YP_002115807.1 2906321 R 439843 CDS YP_002115808.1 194737881 2906992..2907348 1 NC_011094.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2907348 hypA 439843003062 hypA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase nickel incorporation protein YP_002115808.1 2906992 D 439843 CDS YP_002115809.1 194736037 2907417..2908289 1 NC_011094.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2908289 hypB 439843003063 hypB Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase nickel incorporation protein HypB YP_002115809.1 2907417 D 439843 CDS YP_002115810.1 194735268 2908280..2908552 1 NC_011094.1 'HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase'; hydrogenase assembly chaperone 2908552 hypC2 439843003064 hypC2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase assembly chaperone YP_002115810.1 2908280 D 439843 CDS YP_002115811.1 194737254 2908552..2909673 1 NC_011094.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2909673 hypD 439843003065 hypD Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase expression/formation protein HypD YP_002115811.1 2908552 D 439843 CDS YP_002115812.1 194736518 2909670..2910680 1 NC_011094.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 2910680 hypE 439843003066 hypE Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase expression/formation protein HypE YP_002115812.1 2909670 D 439843 CDS YP_002115813.1 194734412 2910899..2912977 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; formate hydrogenlyase transcriptional activator 2912977 439843003067 SeSA_A3012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate hydrogenlyase transcriptional activator YP_002115813.1 2910899 D 439843 CDS YP_002115814.1 194738347 complement(2913039..2913383) 1 NC_011094.1 hypothetical protein 2913383 439843003068 SeSA_A3013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115814.1 2913039 R 439843 CDS YP_002115815.1 194734495 2913565..2914482 1 NC_011094.1 identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 2914482 439843003069 SeSA_A3014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic chelated iron-binding protein YfeA YP_002115815.1 2913565 D 439843 CDS YP_002115816.1 194734016 2914479..2915300 1 NC_011094.1 identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 2915300 439843003070 SeSA_A3015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chelated iron transport system membrane protein YfeB YP_002115816.1 2914479 D 439843 CDS YP_002115817.1 194736300 2915297..2916157 1 NC_011094.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 2916157 439843003071 SeSA_A3016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chelated iron transport system membrane protein YfeC YP_002115817.1 2915297 D 439843 CDS YP_002115818.1 194736525 2916148..2916996 1 NC_011094.1 identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 2916996 439843003072 SeSA_A3017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chelated iron transport system membrane protein YfeD YP_002115818.1 2916148 D 439843 CDS YP_002115819.1 194737304 complement(2917095..2917961) 1 NC_011094.1 identified by match to protein family HMM PF03421; secreted effector protein 2917961 439843003073 SeSA_A3018 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secreted effector protein YP_002115819.1 2917095 R 439843 CDS YP_002115820.1 194737945 complement(2918164..2918919) 1 NC_011094.1 transcriptional regulator 2918919 439843003074 SeSA_A3019 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002115820.1 2918164 R 439843 CDS YP_002115821.1 194734906 complement(2919304..2920191) 1 NC_011094.1 identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein 2920191 439843003075 SeSA_A3020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, AraC family protein YP_002115821.1 2919304 R 439843 CDS YP_002115822.2 449306317 complement(2920535..2920987) 1 NC_011094.1 hypothetical protein 2920987 439843003076 SeSA_A3021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115822.2 2920535 R 439843 CDS YP_008119793.1 513549411 complement(2921003..2921674) 1 NC_011094.1 invasion protein OrgB 2921674 439843003077 SeSA_A3022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein OrgB YP_008119793.1 2921003 R 439843 CDS YP_002115823.1 194735518 complement(2921631..2922209) 1 NC_011094.1 identified by match to protein family HMM PF09482; match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK 2922209 439843003078 SeSA_A3023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein OrgA/MxiK YP_002115823.1 2921631 R 439843 CDS YP_002115824.1 194737310 complement(2922202..2922960) 1 NC_011094.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family protein 2922960 439843003079 SeSA_A3024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus lipoprotein, YscJ/HrcJ family protein YP_002115824.1 2922202 R 439843 CDS YP_002115825.1 194737166 complement(2922957..2923262) 1 NC_011094.1 protein PrgJ 2923262 439843003080 SeSA_A3025 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein PrgJ YP_002115825.1 2922957 R 439843 CDS YP_002115826.1 194734064 complement(2923281..2923523) 1 NC_011094.1 identified by match to protein family HMM PF09392; match to protein family HMM TIGR02105; type III secretion apparatus needle protein 2923523 eprI 439843003081 eprI Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus needle protein YP_002115826.1 2923281 R 439843 CDS YP_002115827.2 449306318 complement(2923548..2924726) 1 NC_011094.1 identified by match to protein family HMM PF09480; match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH 2924726 eprH 439843003082 eprH Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein PrgH/EprH YP_002115827.2 2923548 R 439843 CDS YP_002115828.1 194736023 2925042..2925971 1 NC_011094.1 identified by match to protein family HMM PF00165; transcriptional regulator HilD 2925971 439843003083 SeSA_A3028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator HilD YP_002115828.1 2925042 D 439843 CDS YP_002115829.1 194736966 2927061..2928722 1 NC_011094.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2928722 439843003084 SeSA_A3029 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein regulator YP_002115829.1 2927061 D 439843 CDS YP_002115830.1 194736333 2928740..2929222 1 NC_011094.1 identified by match to protein family HMM PF01464; invasion protein IagB 2929222 439843003085 SeSA_A3030 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein IagB YP_002115830.1 2928740 D 439843 CDS YP_002115831.1 194734059 complement(2929276..2930883) 1 NC_011094.1 identified by match to protein family HMM PF00102; match to protein family HMM PF03545; match to protein family HMM PF09119; effector protein SptP 2930883 439843003086 SeSA_A3031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. effector protein SptP YP_002115831.1 2929276 R 439843 CDS YP_002115832.1 194738043 complement(2930894..2931286) 1 NC_011094.1 identified by match to protein family HMM PF05932; secretion chaperone 2931286 439843003087 SeSA_A3032 Salmonella enterica subsp. enterica serovar Schwarzengrund str. secretion chaperone YP_002115832.1 2930894 R 439843 CDS YP_002115833.1 194735595 complement(2931313..2931537) 1 NC_011094.1 hypothetical protein 2931537 439843003088 SeSA_A3033 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115833.1 2931313 R 439843 CDS YP_002115834.1 194734980 complement(2931617..2931865) 1 NC_011094.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2931865 439843003089 SeSA_A3034 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyl carrier protein YP_002115834.1 2931617 R 439843 CDS YP_002115835.1 194735289 complement(2931884..2933896) 1 NC_011094.1 identified by match to protein family HMM PF09052; cell invasion protein SipA 2933896 439843003090 SeSA_A3035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell invasion protein SipA YP_002115835.1 2931884 R 439843 CDS YP_002115836.1 194735353 complement(2933960..2934982) 1 NC_011094.1 identified by match to protein family HMM PF06511; match to protein family HMM TIGR02553; type III effector protein IpaD/SipD/SspD 2934982 439843003091 SeSA_A3036 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III effector protein IpaD/SipD/SspD YP_002115836.1 2933960 R 439843 CDS YP_008119794.1 513549412 complement(2935053..2936282) 1 NC_011094.1 cell invasion protein SipC 2936282 439843003092 SeSA_A3037 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell invasion protein SipC YP_008119794.1 2935053 R 439843 CDS YP_002115837.1 194735025 complement(2936310..2938091) 1 NC_011094.1 identified by match to protein family HMM PF03518; cell invasion protein SipB 2938091 439843003093 SeSA_A3038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell invasion protein SipB YP_002115837.1 2936310 R 439843 CDS YP_002115838.1 194735531 complement(2938094..2938591) 1 NC_011094.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 2938591 439843003094 SeSA_A3039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion low calcium response chaperone LcrH/SycD YP_002115838.1 2938094 R 439843 CDS YP_002115839.1 194735131 complement(2938729..2939799) 1 NC_011094.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 2939799 439843003095 SeSA_A3040 Salmonella enterica subsp. enterica serovar Schwarzengrund str. surface presentation of antigens protein SpaS YP_002115839.1 2938729 R 439843 CDS YP_002115840.1 194737958 complement(2939786..2940577) 1 NC_011094.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 2940577 epaR 439843003096 epaR Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion apparatus protein SpaR/YscT/HrcT YP_002115840.1 2939786 R 439843 CDS YP_002115841.1 194737177 complement(2940581..2940841) 1 NC_011094.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; protein EpaQ 2940841 439843003097 SeSA_A3042 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein EpaQ YP_002115841.1 2940581 R 439843 CDS YP_002115842.1 194737581 complement(2940867..2941541) 1 NC_011094.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 2941541 spaP 439843003098 spaP Salmonella enterica subsp. enterica serovar Schwarzengrund str. surface presentation of antigens protein SpaP YP_002115842.1 2940867 R 439843 CDS YP_002115843.1 194738216 complement(2941531..2942442) 1 NC_011094.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 2942442 epaO 439843003099 epaO Salmonella enterica subsp. enterica serovar Schwarzengrund str. surface presentation of antigens protein SpaO YP_002115843.1 2941531 R 439843 CDS YP_002115844.1 194734072 complement(2942442..2943452) 1 NC_011094.1 identified by match to protein family HMM PF02510; antigen presentation protein SpaN 2943452 439843003100 SeSA_A3045 Salmonella enterica subsp. enterica serovar Schwarzengrund str. antigen presentation protein SpaN YP_002115844.1 2942442 R 439843 CDS YP_002115845.1 194734552 complement(2943452..2943895) 1 NC_011094.1 identified by match to protein family HMM PF02090; virulence-associated secretory protein 2943895 439843003101 SeSA_A3046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. virulence-associated secretory protein YP_002115845.1 2943452 R 439843 CDS YP_002115846.1 194735197 complement(2943873..2945168) 1 NC_011094.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 2945168 439843003102 SeSA_A3047 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase SpaL YP_002115846.1 2943873 R 439843 CDS YP_002115847.1 194735438 complement(2945165..2945572) 1 NC_011094.1 identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK 2945572 439843003103 SeSA_A3048 Salmonella enterica subsp. enterica serovar Schwarzengrund str. surface presentation of antigens protein SpaK YP_002115847.1 2945165 R 439843 CDS YP_002115848.1 194736186 complement(2945596..2947653) 1 NC_011094.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA 2947653 439843003104 SeSA_A3049 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein InvA YP_002115848.1 2945596 R 439843 CDS YP_002115849.1 194737917 complement(2947678..2948796) 1 NC_011094.1 identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE 2948796 439843003105 SeSA_A3050 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein InvE YP_002115849.1 2947678 R 439843 CDS YP_002115850.2 449306319 complement(2948793..2950481) 1 NC_011094.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore 2950481 439843003106 SeSA_A3051 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type III secretion outer membrane pore YP_002115850.2 2948793 R 439843 CDS YP_002115851.1 194737921 complement(2950478..2951227) 1 NC_011094.1 identified by match to protein family HMM PF00165; invasion protein 2951227 439843003107 SeSA_A3052 Salmonella enterica subsp. enterica serovar Schwarzengrund str. invasion protein YP_002115851.1 2950478 R 439843 CDS YP_002115852.1 194737363 complement(2951326..2951439) 1 NC_011094.1 identified by glimmer; hypothetical protein 2951439 439843003108 SeSA_A3053 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115852.1 2951326 R 439843 CDS YP_002115853.1 194734897 2951585..2952028 1 NC_011094.1 identified by match to protein family HMM PF04741; cell adherance/invasion protein 2952028 439843003109 SeSA_A3054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell adherance/invasion protein YP_002115853.1 2951585 D 439843 CDS YP_002115854.1 194734407 complement(2953456..2953680) 1 NC_011094.1 transposase 2953680 439843003110 SeSA_A3055 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase YP_002115854.1 2953456 R 439843 CDS YP_002115855.1 194735919 2954108..2954764 1 NC_011094.1 identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 2954764 439843003111 SeSA_A3056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine/threonine-specific protein phosphatase 2 YP_002115855.1 2954108 D 439843 CDS YP_002115856.2 449306320 complement(2954936..2955457) 1 NC_011094.1 hypothetical protein 2955457 439843003112 SeSA_A3057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115856.2 2954936 R 439843 CDS YP_002115858.1 194737683 2955616..2958183 1 NC_011094.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2958183 mutS 439843003113 mutS Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA mismatch repair protein MutS YP_002115858.1 2955616 D 439843 CDS YP_002115859.1 194734654 complement(2958239..2958619) 1 NC_011094.1 hypothetical protein 2958619 439843003114 SeSA_A3060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115859.1 2958239 R 439843 CDS YP_002115860.1 194735247 complement(2958616..2959824) 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator family transporter protein 2959824 439843003115 SeSA_A3061 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator family transporter protein YP_002115860.1 2958616 R 439843 CDS YP_002115861.1 194737137 2959933..2960844 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 2960844 439843003116 SeSA_A3062 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002115861.1 2959933 D 439843 CDS YP_002115862.1 194736195 complement(2960886..2962382) 1 NC_011094.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; GntP protein 2962382 439843003117 SeSA_A3063 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GntP protein YP_002115862.1 2960886 R 439843 CDS YP_002115863.1 194738064 complement(2962379..2963329) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 2963329 439843003118 SeSA_A3064 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD-dependent epimerase/dehydratase YP_002115863.1 2962379 R 439843 CDS YP_002115864.1 194734881 complement(2963369..2964145) 1 NC_011094.1 identified by match to protein family HMM PF01261; hypothetical protein 2964145 439843003119 SeSA_A3065 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115864.1 2963369 R 439843 CDS YP_002115865.1 194734554 complement(2964150..2964788) 1 NC_011094.1 identified by match to protein family HMM PF00596; aldolase 2964788 439843003120 SeSA_A3066 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldolase YP_002115865.1 2964150 R 439843 CDS YP_002115866.1 194734714 complement(2964785..2966047) 1 NC_011094.1 identified by match to protein family HMM PF07005; hypothetical protein 2966047 439843003121 SeSA_A3067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115866.1 2964785 R 439843 CDS YP_002115867.1 194735274 complement(2966041..2966964) 1 NC_011094.1 identified by match to protein family HMM PF03446; 6-phosphogluconate dehydrogenase 2966964 439843003122 SeSA_A3068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphogluconate dehydrogenase YP_002115867.1 2966041 R 439843 CDS YP_002115868.1 194736757 2967161..2967925 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; transcriptional regulator, DeoR family protein 2967925 439843003123 SeSA_A3069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, DeoR family protein YP_002115868.1 2967161 D 439843 CDS YP_002115869.1 194734084 complement(2967944..2968348) 1 NC_011094.1 identified by match to protein family HMM PF01047; transcriptional regulator HosA 2968348 439843003124 SeSA_A3070 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator HosA YP_002115869.1 2967944 R 439843 CDS YP_002115870.1 194736013 2968519..2969112 1 NC_011094.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 2969112 kpdB 439843003125 kpdB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybenzoate decarboxylase subunit B YP_002115870.1 2968519 D 439843 CDS YP_002115871.1 194737820 2969112..2970539 1 NC_011094.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 2970539 kpdC 439843003126 kpdC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybenzoate decarboxylase subunit C YP_002115871.1 2969112 D 439843 CDS YP_002115872.1 194734772 2970550..2970786 1 NC_011094.1 4-hydroxybenzoate decarboxylase subunit D 2970786 kpdD 439843003127 kpdD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybenzoate decarboxylase subunit D YP_002115872.1 2970550 D 439843 CDS YP_002115873.1 194738113 complement(2970832..2971824) 1 NC_011094.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 2971824 rpoS 439843003128 rpoS Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase sigma factor RpoS YP_002115873.1 2970832 R 439843 CDS YP_002115874.1 194737503 complement(2971887..2973020) 1 NC_011094.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 2973020 nlpD 439843003129 nlpD Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein NlpD YP_002115874.1 2971887 R 439843 CDS YP_002115875.1 194737427 complement(2973196..2973822) 1 NC_011094.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 2973822 pcm 439843003131 pcm Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein-L-isoaspartate O-methyltransferase YP_002115875.1 2973196 R 439843 CDS YP_002115876.1 194734748 complement(2973816..2974577) 1 NC_011094.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2974577 surE 439843003132 surE Salmonella enterica subsp. enterica serovar Schwarzengrund str. stationary phase survival protein SurE YP_002115876.1 2973816 R 439843 CDS YP_002115877.1 194735561 complement(2974558..2975607) 1 NC_011094.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 2975607 truD 439843003133 truD Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA pseudouridine synthase D YP_002115877.1 2974558 R 439843 CDS YP_002115878.1 194738272 complement(2975604..2976083) 1 NC_011094.1 'catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate'; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2976083 ispF 439843003134 ispF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002115878.1 2975604 R 439843 CDS YP_002115879.1 194738080 complement(2976083..2976793) 1 NC_011094.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2976793 ispD 439843003135 ispD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002115879.1 2976083 R 439843 CDS YP_002115880.1 194736412 complement(2976812..2977123) 1 NC_011094.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 2977123 ftsB 439843003136 ftsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsB YP_002115880.1 2976812 R 439843 CDS YP_002115881.2 449306321 complement(2977314..2977670) 1 NC_011094.1 hypothetical protein 2977670 439843003137 SeSA_A3083 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115881.2 2977314 R 439843 CDS YP_002115882.1 194735437 complement(2977688..2978293) 1 NC_011094.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 2978293 cysC 439843003138 cysC Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylylsulfate kinase YP_002115882.1 2977688 R 439843 CDS YP_002115883.1 194737140 complement(2978280..2979719) 1 NC_011094.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 2979719 cysN 439843003139 cysN Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate adenylyltransferase subunit 1 YP_002115883.1 2978280 R 439843 CDS YP_002115884.1 194734255 complement(2979729..2980637) 1 NC_011094.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2980637 cysD 439843003140 cysD Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate adenylyltransferase subunit 2 YP_002115884.1 2979729 R 439843 CDS YP_002115885.1 194736786 2980888..2981934 1 NC_011094.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 2981934 439843003141 SeSA_A3087 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alkaline phosphatase YP_002115885.1 2980888 D 439843 CDS YP_002115887.1 194734177 complement(2982794..2983087) 1 NC_011094.1 hypothetical protein 2983087 439843003142 SeSA_A3091 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115887.1 2982794 R 439843 CDS YP_002115888.1 194734989 complement(2983090..2984007) 1 NC_011094.1 identified by match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 2984007 cas 439843003143 cas Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein Cas1 YP_002115888.1 2983090 R 439843 CDS YP_002115889.1 194737739 complement(2984004..2984711) 1 NC_011094.1 identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; CRISPR-associated protein, Cse3 family protein 2984711 cse 439843003144 cse Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein, Cse3 family protein YP_002115889.1 2984004 R 439843 CDS YP_002115890.1 194737877 complement(2984711..2985436) 1 NC_011094.1 identified by match to protein family HMM PF09708; match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5 2985436 cas5 439843003145 cas5 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein Cas5 YP_002115890.1 2984711 R 439843 CDS YP_002115891.1 194734074 complement(2985446..2986504) 1 NC_011094.1 identified by match to protein family HMM PF09344; match to protein family HMM TIGR01869; CRISPR-associated protein, Cse4 family protein 2986504 cse4 439843003146 cse4 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein, Cse4 family protein YP_002115891.1 2985446 R 439843 CDS YP_002115892.1 194734696 complement(2986527..2987129) 1 NC_011094.1 identified by match to protein family HMM PF09485; match to protein family HMM TIGR02548; CRISPR-associated protein, Cse2 family protein 2987129 cse2 439843003147 cse2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein, Cse2 family protein YP_002115892.1 2986527 R 439843 CDS YP_002115893.1 194734766 complement(2987146..2988681) 1 NC_011094.1 identified by match to protein family HMM PF09481; match to protein family HMM TIGR02547; CRISPR-associated protein, Cse1 family protein 2988681 cse 439843003148 cse Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated protein, Cse1 family protein YP_002115893.1 2987146 R 439843 CDS YP_008119795.1 513549413 2989243..2991942 1 NC_011094.1 CRISPR-associated endonuclease/helicase Cas3 2991942 439843003149 SeSA_A3098 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CRISPR-associated endonuclease/helicase Cas3 YP_008119795.1 2989243 D 439843 CDS YP_002115894.2 449306322 2992326..2993279 1 NC_011094.1 Sop effector protein SopD 2993279 439843003150 SeSA_A3099 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Sop effector protein SopD YP_002115894.2 2992326 D 439843 CDS YP_002115895.1 194737522 complement(2993367..2994101) 1 NC_011094.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2994101 cysH 439843003151 cysH Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoadenosine phosphosulfate reductase YP_002115895.1 2993367 R 439843 CDS YP_002115896.1 194736741 complement(2994177..2995889) 1 NC_011094.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 2995889 cysI 439843003152 cysI Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite reductase subunit beta YP_002115896.1 2994177 R 439843 CDS YP_002115897.1 194736260 complement(2995889..2997688) 1 NC_011094.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 2997688 cysJ 439843003153 cysJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite reductase subunit alpha YP_002115897.1 2995889 R 439843 CDS YP_002115898.1 194738118 2998124..2998486 1 NC_011094.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR00039; match to protein family HMM TIGR03367; queuosine biosynthesis protein QueD 2998486 queD 439843003154 queD Salmonella enterica subsp. enterica serovar Schwarzengrund str. queuosine biosynthesis protein QueD YP_002115898.1 2998124 D 439843 CDS YP_002115899.1 194737536 complement(2998574..2999371) 1 NC_011094.1 identified by match to protein family HMM PF00753; beta-lactamase domain-containing protein 2999371 439843003155 SeSA_A3104 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-lactamase domain-containing protein YP_002115899.1 2998574 R 439843 CDS YP_002115900.1 194736296 3000197..3000310 1 NC_011094.1 hypothetical protein 3000310 439843003157 SeSA_A3106 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115900.1 3000197 D 439843 CDS YP_002115901.1 194736252 complement(3000654..3000800) 1 NC_011094.1 identified by glimmer; hypothetical protein 3000800 439843003159 SeSA_A3108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115901.1 3000654 R 439843 CDS YP_002115902.1 194736116 complement(3000831..3001502) 1 NC_011094.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3001502 439843003160 SeSA_A3109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. radical SAM domain-containing protein YP_002115902.1 3000831 R 439843 CDS YP_002115903.1 194735542 complement(3001638..3002936) 1 NC_011094.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3002936 eno 439843003161 eno Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphopyruvate hydratase YP_002115903.1 3001638 R 439843 CDS YP_002115904.1 194736319 complement(3003019..3004656) 1 NC_011094.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3004656 pyrG 439843003162 pyrG Salmonella enterica subsp. enterica serovar Schwarzengrund str. CTP synthetase YP_002115904.1 3003019 R 439843 CDS YP_002115905.1 194736957 complement(3004884..3005684) 1 NC_011094.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3005684 mazG 439843003163 mazG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside triphosphate pyrophosphohydrolase YP_002115905.1 3004884 R 439843 CDS YP_002115906.1 194735067 complement(3006452..3006748) 1 NC_011094.1 identified by match to protein family HMM PF05016; RelE/ParE family plasmid stabilization system protein 3006748 439843003164 SeSA_A3113 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RelE/ParE family plasmid stabilization system protein YP_002115906.1 3006452 R 439843 CDS YP_002115907.1 194735716 complement(3006714..3007001) 1 NC_011094.1 identified by match to protein family HMM PF01402; match to protein family HMM PF03693; match to protein family HMM TIGR02606; addiction module antidote protein, family protein 3007001 439843003165 SeSA_A3114 Salmonella enterica subsp. enterica serovar Schwarzengrund str. addiction module antidote protein, family protein YP_002115907.1 3006714 R 439843 CDS YP_002115908.1 194738051 complement(3007155..3009389) 1 NC_011094.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3009389 relA 439843003166 relA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GDP/GTP pyrophosphokinase YP_002115908.1 3007155 R 439843 CDS YP_002115909.1 194733918 complement(3009441..3010736) 1 NC_011094.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3010736 rumA 439843003167 rumA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA 5-methyluridine methyltransferase YP_002115909.1 3009441 R 439843 CDS YP_002115910.1 194737545 3010794..3013550 1 NC_011094.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3013550 439843003168 SeSA_A3117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hybrid sensory histidine kinase BarA YP_002115910.1 3010794 D 439843 CDS YP_002115911.1 194738114 complement(3013594..3014736) 1 NC_011094.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 3014736 439843003169 SeSA_A3118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerate kinase YP_002115911.1 3013594 R 439843 CDS YP_002115912.1 194736275 complement(3014814..3016154) 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase 3016154 439843003170 SeSA_A3119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucarate dehydratase YP_002115912.1 3014814 R 439843 CDS YP_002115913.1 194737255 complement(3016175..3017515) 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; glucarate dehydratase 3017515 439843003171 SeSA_A3120 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucarate dehydratase YP_002115913.1 3016175 R 439843 CDS YP_002115914.1 194737540 complement(3017512..3018870) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease 3018870 gudP 439843003172 gudP Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucarate permease YP_002115914.1 3017512 R 439843 CDS YP_002115915.1 194735907 complement(3019352..3019801) 1 NC_011094.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin 3019801 439843003174 SeSA_A3123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flavodoxin YP_002115915.1 3019352 R 439843 CDS YP_002115916.1 194734776 complement(3019820..3020602) 1 NC_011094.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3020602 439843003175 SeSA_A3124 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA pseudouridine synthase C YP_002115916.1 3019820 R 439843 CDS YP_002115917.1 194735471 complement(3020602..3020931) 1 NC_011094.1 identified by match to protein family HMM PF04287; hypothetical protein 3020931 439843003176 SeSA_A3125 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115917.1 3020602 R 439843 CDS YP_002115918.1 194736136 complement(3021543..3022088) 1 NC_011094.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3022088 439843003178 SeSA_A3127 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SecY interacting protein Syd YP_002115918.1 3021543 R 439843 CDS YP_002115919.1 194735727 3022157..3023005 1 NC_011094.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3023005 queF 439843003179 queF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 7-cyano-7-deazaguanine reductase YP_002115919.1 3022157 D 439843 CDS YP_002115920.1 194734921 3023119..3024483 1 NC_011094.1 identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3024483 439843003180 SeSA_A3129 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysine decarboxylase family protein YP_002115920.1 3023119 D 439843 CDS YP_002115921.1 194736684 3025048..3026337 1 NC_011094.1 identified by match to protein family HMM TIGR00814; serine transporter family protein 3026337 439843003181 SeSA_A3130 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine transporter family protein YP_002115921.1 3025048 D 439843 CDS YP_002115922.1 194735968 3026396..3027763 1 NC_011094.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3027763 439843003182 SeSA_A3131 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-serine ammonia-lyase YP_002115922.1 3026396 D 439843 CDS YP_002115923.2 449306323 3027873..3028688 1 NC_011094.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3028688 xni 439843003183 xni Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease IX YP_002115923.2 3027873 D 439843 CDS YP_002115924.1 194737275 complement(3028780..3029928) 1 NC_011094.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase 3029928 fucO 439843003184 fucO Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-1,2-propanediol oxidoreductase YP_002115924.1 3028780 R 439843 CDS YP_002115925.1 194734317 complement(3029945..3030592) 1 NC_011094.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3030592 fucA 439843003185 fucA Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-fuculose phosphate aldolase YP_002115925.1 3029945 R 439843 CDS YP_002115926.1 194733990 complement(3030746..3030913) 1 NC_011094.1 hypothetical protein 3030913 439843003186 SeSA_A3135 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115926.1 3030746 R 439843 CDS YP_002115927.1 194734308 complement(3031000..3031122) 1 NC_011094.1 identified by glimmer; hypothetical protein 3031122 439843003187 SeSA_A3136 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115927.1 3031000 R 439843 CDS YP_002115928.1 194734794 3031148..3032464 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3032464 fucP 439843003188 fucP Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-fucose transporter YP_002115928.1 3031148 D 439843 CDS YP_002115929.1 194735482 3032496..3034271 1 NC_011094.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3034271 fucI 439843003189 fucI Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-fucose isomerase YP_002115929.1 3032496 D 439843 CDS YP_002115930.1 194735916 3034372..3035790 1 NC_011094.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3035790 fucK 439843003190 fucK Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-fuculokinase YP_002115930.1 3034372 D 439843 CDS YP_002115931.1 194738148 3035792..3036214 1 NC_011094.1 identified by match to protein family HMM PF05025; fuscose operon FucU protein 3036214 439843003191 SeSA_A3140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fuscose operon FucU protein YP_002115931.1 3035792 D 439843 CDS YP_002115932.1 194736516 3036272..3036982 1 NC_011094.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3036982 439843003192 SeSA_A3141 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator FucR YP_002115932.1 3036272 D 439843 CDS YP_002115933.1 194734556 complement(3037041..3038141) 1 NC_011094.1 RNA 2'-O-ribose methyltransferase 3038141 439843003193 SeSA_A3142 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA 2'-O-ribose methyltransferase YP_002115933.1 3037041 R 439843 CDS YP_002115934.1 194737474 complement(3038134..3038529) 1 NC_011094.1 identified by match to protein family HMM PF04241; hypothetical protein 3038529 439843003194 SeSA_A3143 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115934.1 3038134 R 439843 CDS YP_002115935.1 194737180 complement(3038548..3039465) 1 NC_011094.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3039465 gcvA 439843003195 gcvA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator GcvA YP_002115935.1 3038548 R 439843 CDS YP_002115936.1 194736466 complement(3039812..3040039) 1 NC_011094.1 identified by match to protein family HMM PF06004; lipoprotein 3040039 439843003197 SeSA_A3146 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002115936.1 3039812 R 439843 CDS YP_002115937.1 194738385 3040232..3041437 1 NC_011094.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392; cysteine sulfinate desulfinase 3041437 csdA 439843003198 csdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine sulfinate desulfinase YP_002115937.1 3040232 D 439843 CDS YP_002115938.1 194737740 3041437..3041880 1 NC_011094.1 identified by match to protein family HMM PF02657; match to protein family HMM TIGR03391; cysteine desulfurase, sulfur acceptor subunit CsdE 3041880 csdE 439843003199 csdE Salmonella enterica subsp. enterica serovar Schwarzengrund str. cysteine desulfurase, sulfur acceptor subunit CsdE YP_002115938.1 3041437 D 439843 CDS YP_002115939.1 194736270 3042153..3043067 1 NC_011094.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3043067 rarD 439843003200 rarD Salmonella enterica subsp. enterica serovar Schwarzengrund str. RarD protein YP_002115939.1 3042153 D 439843 CDS YP_002115940.1 194735781 complement(3043119..3043925) 1 NC_011094.1 identified by match to protein family HMM PF00899; ThiF family protein 3043925 439843003201 SeSA_A3150 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ThiF family protein YP_002115940.1 3043119 R 439843 CDS YP_008119796.1 513549414 complement(3044035..3045132) 1 NC_011094.1 membrane-bound lytic murein transglycosylase A 3045132 439843003202 SeSA_A3151 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane-bound lytic murein transglycosylase A YP_008119796.1 3044035 R 439843 CDS YP_008119797.1 513549415 complement(3045632..3046885) 1 NC_011094.1 N-acetylmuramoyl-L-alanine amidase AmiC 3046885 439843003205 SeSA_A3154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmuramoyl-L-alanine amidase AmiC YP_008119797.1 3045632 R 439843 CDS YP_002115941.1 194735505 3047118..3048449 1 NC_011094.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3048449 argA 439843003206 argA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylglutamate synthase YP_002115941.1 3047118 D 439843 CDS YP_002115942.1 194734822 complement(3048552..3050387) 1 NC_011094.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3050387 recD 439843003207 recD Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease V subunit alpha YP_002115942.1 3048552 R 439843 CDS YP_002115943.1 194736312 complement(3050384..3053929) 1 NC_011094.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3053929 recB 439843003208 recB Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease V subunit beta YP_002115943.1 3050384 R 439843 CDS YP_002115944.1 194735677 complement(3053922..3056810) 1 NC_011094.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 3056810 439843003209 SeSA_A3158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protease 3 YP_002115944.1 3053922 R 439843 CDS YP_002115945.1 194737570 complement(3056988..3060359) 1 NC_011094.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3060359 recC 439843003210 recC Salmonella enterica subsp. enterica serovar Schwarzengrund str. exonuclease V subunit gamma YP_002115945.1 3056988 R 439843 CDS YP_002115946.2 449306324 complement(3060375..3060695) 1 NC_011094.1 hypothetical protein 3060695 439843003211 SeSA_A3160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115946.2 3060375 R 439843 CDS YP_002115947.1 194734859 complement(3060680..3061087) 1 NC_011094.1 alternate name YgdB, URF2; orf of X03966; 2nd start; ORF_f121; hypothetical protein 3061087 439843003212 SeSA_A3161 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115947.1 3060680 R 439843 CDS YP_002115948.1 194737655 complement(3061084..3061608) 1 NC_011094.1 hypothetical protein 3061608 439843003213 SeSA_A3162 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115948.1 3061084 R 439843 CDS YP_002115949.1 194737213 complement(3061638..3062108) 1 NC_011094.1 identified by match to protein family HMM TIGR02532; hypothetical protein 3062108 439843003214 SeSA_A3163 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115949.1 3061638 R 439843 CDS YP_002115950.1 194737899 3062118..3062300 1 NC_011094.1 hypothetical protein 3062300 439843003215 SeSA_A3164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115950.1 3062118 D 439843 CDS YP_002115951.1 194735179 complement(3062293..3063087) 1 NC_011094.1 'ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived'; thymidylate synthase 3063087 thyA 439843003216 thyA Salmonella enterica subsp. enterica serovar Schwarzengrund str. thymidylate synthase YP_002115951.1 3062293 R 439843 CDS YP_002115952.1 194736348 complement(3063094..3063969) 1 NC_011094.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3063969 lgt 439843003217 lgt Salmonella enterica subsp. enterica serovar Schwarzengrund str. prolipoprotein diacylglyceryl transferase YP_002115952.1 3063094 R 439843 CDS YP_002115953.1 194734275 complement(3064185..3066431) 1 NC_011094.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 3066431 ptsP 439843003218 ptsP Salmonella enterica subsp. enterica serovar Schwarzengrund str. fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein YP_002115953.1 3064185 R 439843 CDS YP_002115954.1 194734774 complement(3066444..3066974) 1 NC_011094.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3066974 nudH 439843003219 nudH Salmonella enterica subsp. enterica serovar Schwarzengrund str. dinucleoside polyphosphate hydrolase YP_002115954.1 3066444 R 439843 CDS YP_002115955.1 194735588 3067657..3068352 1 NC_011094.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3068352 mutH 439843003220 mutH Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA mismatch repair protein YP_002115955.1 3067657 D 439843 CDS YP_002115956.1 194736050 3068401..3068562 1 NC_011094.1 identified by glimmer; hypothetical protein 3068562 439843003221 SeSA_A3170 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115956.1 3068401 D 439843 CDS YP_002115957.1 194734032 3068534..3069247 1 NC_011094.1 identified by match to protein family HMM PF03741; hypothetical protein 3069247 439843003222 SeSA_A3171 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115957.1 3068534 D 439843 CDS YP_002115958.1 194738056 3069417..3069635 1 NC_011094.1 identified by match to protein family HMM PF06004; hypothetical protein 3069635 439843003223 SeSA_A3172 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115958.1 3069417 D 439843 CDS YP_002115959.1 194734740 3069826..3070866 1 NC_011094.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3070866 tas 439843003224 tas Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldo-keto reductase YP_002115959.1 3069826 D 439843 CDS YP_002115960.1 194734249 complement(3070953..3072155) 1 NC_011094.1 identified by match to protein family HMM PF07690; lysophospholipid transporter LplT 3072155 439843003225 SeSA_A3174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysophospholipid transporter LplT YP_002115960.1 3070953 R 439843 CDS YP_002115961.1 194736096 complement(3072148..3074307) 1 NC_011094.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3074307 439843003226 SeSA_A3175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_002115961.1 3072148 R 439843 CDS YP_002115962.1 194735617 complement(3074776..3074910) 1 NC_011094.1 hypothetical protein 3074910 439843003229 SeSA_A3179 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115962.1 3074776 R 439843 CDS YP_002115963.1 194736933 3074900..3075928 1 NC_011094.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3075928 439843003230 SeSA_A3178 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator GalR YP_002115963.1 3074900 D 439843 CDS YP_002115964.1 194736198 3075942..3076961 1 NC_011094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3076961 439843003231 SeSA_A3180 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator AscG YP_002115964.1 3075942 D 439843 CDS YP_002115965.1 194738024 complement(3076971..3078233) 1 NC_011094.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3078233 lysA 439843003232 lysA Salmonella enterica subsp. enterica serovar Schwarzengrund str. diaminopimelate decarboxylase YP_002115965.1 3076971 R 439843 CDS YP_002115966.1 194737023 3078351..3079286 1 NC_011094.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3079286 439843003233 SeSA_A3182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator LysR YP_002115966.1 3078351 D 439843 CDS YP_002115967.1 194735136 complement(3079258..3079965) 1 NC_011094.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase 3079965 439843003234 SeSA_A3183 Salmonella enterica subsp. enterica serovar Schwarzengrund str. racemase YP_002115967.1 3079258 R 439843 CDS YP_002115968.1 194735530 complement(3080078..3081496) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein 3081496 439843003235 SeSA_A3184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-arabinose/proton symport protein YP_002115968.1 3080078 R 439843 CDS YP_002115969.1 194736302 complement(3081848..3082609) 1 NC_011094.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3082609 kduD 439843003236 kduD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-deoxy-D-gluconate 3-dehydrogenase YP_002115969.1 3081848 R 439843 CDS YP_002115970.1 194736762 complement(3082666..3083502) 1 NC_011094.1 '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate'; 5-keto-4-deoxyuronate isomerase 3083502 kduI 439843003237 kduI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5-keto-4-deoxyuronate isomerase YP_002115970.1 3082666 R 439843 CDS YP_002115971.1 194737538 complement(3083493..3083663) 1 NC_011094.1 identified by glimmer; hypothetical protein 3083663 439843003238 SeSA_A3187 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115971.1 3083493 R 439843 CDS YP_002115972.1 194738001 complement(3083932..3085110) 1 NC_011094.1 'Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis'; acetyl-CoA acetyltransferase 3085110 439843003239 SeSA_A3188 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA acetyltransferase YP_002115972.1 3083932 R 439843 CDS YP_002115973.1 194734263 complement(3085233..3086096) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 3086096 439843003240 SeSA_A3189 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002115973.1 3085233 R 439843 CDS YP_002115974.1 194734909 3086200..3086655 1 NC_011094.1 identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3086655 439843003241 SeSA_A3190 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transmembrane pair domain-containing protein YP_002115974.1 3086200 D 439843 CDS YP_002115975.1 194735678 3086797..3088026 1 NC_011094.1 inner membrane transport protein YqeG 3088026 439843003242 SeSA_A3191 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YqeG YP_002115975.1 3086797 D 439843 CDS YP_002115976.1 194738397 complement(3088057..3088329) 1 NC_011094.1 identified by match to protein family HMM PF02583; hypothetical protein 3088329 439843003243 SeSA_A3192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115976.1 3088057 R 439843 CDS YP_002115977.1 194737277 3088451..3089299 1 NC_011094.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3089299 439843003244 SeSA_A3193 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nickel/cobalt efflux protein RcnA YP_002115977.1 3088451 D 439843 CDS YP_002115978.1 194736631 complement(3089509..3090267) 1 NC_011094.1 hypothetical protein 3090267 439843003245 SeSA_A3194 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115978.1 3089509 R 439843 CDS YP_002115979.1 194737256 complement(3090254..3090760) 1 NC_011094.1 identified by match to protein family HMM PF07180; hypothetical protein 3090760 439843003246 SeSA_A3195 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115979.1 3090254 R 439843 CDS YP_003495234.1 291084496 complement(3090870..3091952) 1 NC_011094.1 hypothetical protein 3091952 439843003247 SeSA_A3196 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_003495234.1 3090870 R 439843 CDS YP_002115980.1 194735172 complement(3091949..3092692) 1 NC_011094.1 identified by match to protein family HMM PF00345; pili assembly chaperone protein 3092692 439843003248 SeSA_A3197 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pili assembly chaperone protein YP_002115980.1 3091949 R 439843 CDS YP_002115981.1 194734483 complement(3092733..3095222) 1 NC_011094.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3095222 439843003249 SeSA_A3198 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial usher protein YP_002115981.1 3092733 R 439843 CDS YP_002115982.1 194734167 complement(3095342..3095929) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 3095929 439843003250 SeSA_A3199 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002115982.1 3095342 R 439843 CDS YP_002115983.1 194738163 complement(3096648..3097280) 1 NC_011094.1 hypothetical protein 3097280 439843003251 SeSA_A3200 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115983.1 3096648 R 439843 CDS YP_002115984.1 194737697 complement(3097327..3097863) 1 NC_011094.1 identified by match to protein family HMM PF06316; outer membrane protein 3097863 439843003252 SeSA_A3201 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002115984.1 3097327 R 439843 CDS YP_002115985.1 194737183 complement(3097909..3098094) 1 NC_011094.1 hypothetical protein 3098094 439843003253 SeSA_A3202 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115985.1 3097909 R 439843 CDS YP_002115986.1 194737999 complement(3098845..3099078) 1 NC_011094.1 identified by glimmer; hypothetical protein 3099078 439843003254 SeSA_A3204 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115986.1 3098845 R 439843 CDS YP_002115987.1 194733960 3099037..3099837 1 NC_011094.1 identified by match to protein family HMM PF07313; hypothetical protein 3099837 439843003255 SeSA_A3203 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115987.1 3099037 D 439843 CDS YP_002115988.1 194737641 complement(3100112..3100864) 1 NC_011094.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein 3100864 439843003257 SeSA_A3206 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115988.1 3100112 R 439843 CDS YP_002115989.1 194738187 3101135..3101680 1 NC_011094.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3101680 idi 439843003258 idi Salmonella enterica subsp. enterica serovar Schwarzengrund str. isopentenyl-diphosphate delta-isomerase YP_002115989.1 3101135 D 439843 CDS YP_002115990.1 194736687 complement(3101756..3103273) 1 NC_011094.1 'class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1'; lysyl-tRNA synthetase 3103273 lysS 439843003259 lysS Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysyl-tRNA synthetase YP_002115990.1 3101756 R 439843 CDS YP_008119798.1 513549416 complement(3103283..3104164) 1 NC_011094.1 peptide chain release factor 3104164 prfB 439843003260 prfB Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide chain release factor YP_008119798.1 3103283 R 439843 CDS YP_002115991.1 194735123 complement(3104486..3106219) 1 NC_011094.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3106219 recJ 439843003261 recJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. ssDNA exonuclease RecJ YP_002115991.1 3104486 R 439843 CDS YP_002115992.1 194735767 complement(3106225..3106938) 1 NC_011094.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3106938 439843003262 SeSA_A3211 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol:disulfide interchange protein DsbC YP_002115992.1 3106225 R 439843 CDS YP_002115993.1 194738371 complement(3106962..3107858) 1 NC_011094.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3107858 xerD 439843003263 xerD Salmonella enterica subsp. enterica serovar Schwarzengrund str. site-specific tyrosine recombinase XerD YP_002115993.1 3106962 R 439843 CDS YP_002115994.1 194734467 3107971..3108492 1 NC_011094.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic'; flavodoxin FldB 3108492 439843003264 SeSA_A3213 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flavodoxin FldB YP_002115994.1 3107971 D 439843 CDS YP_002115995.1 194736979 complement(3108545..3108958) 1 NC_011094.1 identified by match to protein family HMM PF07254; hypothetical protein 3108958 439843003265 SeSA_A3214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115995.1 3108545 R 439843 CDS YP_002115996.1 194736338 complement(3108939..3109205) 1 NC_011094.1 identified by match to protein family HMM PF03937; hypothetical protein 3109205 439843003266 SeSA_A3216 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115996.1 3108939 R 439843 CDS YP_002115997.1 194737927 3109455..3110435 1 NC_011094.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3110435 439843003268 SeSA_A3217 Salmonella enterica subsp. enterica serovar Schwarzengrund str. global regulator YP_002115997.1 3109455 D 439843 CDS YP_002115998.1 194735005 complement(3110551..3111210) 1 NC_011094.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 3111210 439843003269 SeSA_A3218 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hemolysin-3 YP_002115998.1 3110551 R 439843 CDS YP_002115999.1 194734498 complement(3111374..3111685) 1 NC_011094.1 identified by match to protein family HMM PF04266; hypothetical protein 3111685 439843003270 SeSA_A3219 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002115999.1 3111374 R 439843 CDS YP_002116000.1 194735389 3111843..3113276 1 NC_011094.1 identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3113276 439843003271 SeSA_A3220 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phospho-beta-glucosidase YP_002116000.1 3111843 D 439843 CDS YP_002116001.1 194734851 complement(3113324..3114262) 1 NC_011094.1 outer membrane protein 3114262 439843003272 SeSA_A3221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002116001.1 3113324 R 439843 CDS YP_002116002.1 194736611 complement(3117708..3118097) 1 NC_011094.1 'part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor'; glycine cleavage system protein H 3118097 gcvH 439843003274 gcvH Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine cleavage system protein H YP_002116002.1 3117708 R 439843 CDS YP_002116003.1 194735702 complement(3118123..3119217) 1 NC_011094.1 'catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein'; glycine cleavage system aminomethyltransferase T 3119217 gcvT 439843003275 gcvT Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycine cleavage system aminomethyltransferase T YP_002116003.1 3118123 R 439843 CDS YP_002116004.1 194736819 3119258..3119398 1 NC_011094.1 identified by glimmer; hypothetical protein 3119398 439843003276 SeSA_A3226 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116004.1 3119258 D 439843 CDS YP_002116005.1 194736217 complement(3119672..3120874) 1 NC_011094.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein 3120874 439843003277 SeSA_A3227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116005.1 3119672 R 439843 CDS YP_002116006.1 194734439 complement(3121000..3122178) 1 NC_011094.1 'Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone'; 2-octaprenyl-6-methoxyphenyl hydroxylase 3122178 ubiH 439843003278 ubiH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002116006.1 3121000 R 439843 CDS YP_002116007.1 194738185 complement(3122175..3123491) 1 NC_011094.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3123491 pepP 439843003279 pepP Salmonella enterica subsp. enterica serovar Schwarzengrund str. proline aminopeptidase P II YP_002116007.1 3122175 R 439843 CDS YP_002116008.1 194734157 complement(3123517..3124095) 1 NC_011094.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3124095 439843003280 SeSA_A3230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116008.1 3123517 R 439843 CDS YP_002116009.2 449306325 3124262..3124591 1 NC_011094.1 hypothetical protein 3124591 439843003281 SeSA_A3231 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116009.2 3124262 D 439843 CDS YP_002116010.1 194735044 3124837..3125433 1 NC_011094.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3125433 439843003283 SeSA_A3233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ligase YP_002116010.1 3124837 D 439843 CDS YP_002116011.1 194734978 complement(3125814..3127046) 1 NC_011094.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3127046 serA 439843003285 serA Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-3-phosphoglycerate dehydrogenase YP_002116011.1 3125814 R 439843 CDS YP_008119799.1 513549417 complement(3127313..3127972) 1 NC_011094.1 ribose 5-phosphate isomerase A 3127972 rpiA 439843003286 rpiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribose 5-phosphate isomerase A YP_008119799.1 3127313 R 439843 CDS YP_002116012.1 194735077 3128126..3129019 1 NC_011094.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3129019 439843003287 SeSA_A3237 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chromosome replication initiation inhibitor protein YP_002116012.1 3128126 D 439843 CDS YP_002116013.1 194735360 complement(3129187..3129933) 1 NC_011094.1 identified by match to protein family HMM PF04402; hypothetical protein 3129933 439843003288 SeSA_A3238 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116013.1 3129187 R 439843 CDS YP_002116014.1 194735998 complement(3130027..3130662) 1 NC_011094.1 Involved in the export of arginine; arginine exporter protein 3130662 439843003289 SeSA_A3239 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine exporter protein YP_002116014.1 3130027 R 439843 CDS YP_002116015.1 194734372 complement(3130863..3131723) 1 NC_011094.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3131723 439843003290 SeSA_A3240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mechanosensitive channel MscS YP_002116015.1 3130863 R 439843 CDS YP_002116016.1 194735008 complement(3131946..3133025) 1 NC_011094.1 'catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate'; fructose-bisphosphate aldolase 3133025 fbaA 439843003291 fbaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-bisphosphate aldolase YP_002116016.1 3131946 R 439843 CDS YP_002116017.1 194737311 complement(3133127..3134290) 1 NC_011094.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3134290 pgk 439843003292 pgk Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate kinase YP_002116017.1 3133127 R 439843 CDS YP_002116018.1 194737900 complement(3134312..3135358) 1 NC_011094.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3135358 epd 439843003293 epd Salmonella enterica subsp. enterica serovar Schwarzengrund str. erythrose 4-phosphate dehydrogenase YP_002116018.1 3134312 R 439843 CDS YP_002116019.1 194736305 3135732..3136157 1 NC_011094.1 identified by match to protein family HMM PF03479; hypothetical protein 3136157 439843003294 SeSA_A3244 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116019.1 3135732 D 439843 CDS YP_002116020.1 194736968 3136183..3136761 1 NC_011094.1 signal transduction histidine kinase, LytS 3136761 439843003295 SeSA_A3245 Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal transduction histidine kinase, LytS YP_002116020.1 3136183 D 439843 CDS YP_002116021.1 194736119 3136762..3137469 1 NC_011094.1 identified by match to protein family HMM PF02361; ABC transporter permease 3137469 439843003296 SeSA_A3246 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002116021.1 3136762 D 439843 CDS YP_002116022.1 194735498 3137457..3138134 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3138134 439843003297 SeSA_A3247 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002116022.1 3137457 D 439843 CDS YP_002116023.1 194737889 3138128..3138817 1 NC_011094.1 identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3138817 439843003298 SeSA_A3248 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cobalt ABC transporter ATPase YP_002116023.1 3138128 D 439843 CDS YP_002116024.1 194736290 complement(3138786..3139502) 1 NC_011094.1 fructose transport system kinase 3139502 frcK 439843003299 frcK Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose transport system kinase YP_002116024.1 3138786 R 439843 CDS YP_002116025.1 194734962 complement(3139487..3140008) 1 NC_011094.1 identified by match to protein family HMM PF05068; DNA-binding transcriptional regulator 3140008 439843003300 SeSA_A3250 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002116025.1 3139487 R 439843 CDS YP_002116026.1 194734320 complement(3140222..3141193) 1 NC_011094.1 identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330; fructose-1,6-bisphosphatase II-like protein 3141193 glpX 439843003301 glpX Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-1,6-bisphosphatase II-like protein YP_002116026.1 3140222 R 439843 CDS YP_002116027.1 194734296 complement(3141190..3142464) 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-sorbose 1-phosphate reductase 3142464 439843003302 SeSA_A3252 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-sorbose 1-phosphate reductase YP_002116027.1 3141190 R 439843 CDS YP_002116028.1 194736091 complement(3142488..3143867) 1 NC_011094.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; PTS system mannitol-specific transporter subunit IICBA 3143867 439843003303 SeSA_A3253 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannitol-specific transporter subunit IICBA YP_002116028.1 3142488 R 439843 CDS YP_002116029.1 194735202 complement(3143895..3144338) 1 NC_011094.1 'TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein'; mannitol phosphotransferase subunit EIIA 3144338 cmtB 439843003304 cmtB Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannitol phosphotransferase subunit EIIA YP_002116029.1 3143895 R 439843 CDS YP_002116030.1 194736944 complement(3144481..3144636) 1 NC_011094.1 identified by glimmer; hypothetical protein 3144636 439843003305 SeSA_A3255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116030.1 3144481 R 439843 CDS YP_002116031.1 194736233 complement(3144650..3146641) 1 NC_011094.1 'catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase'; transketolase 3146641 tktA 439843003306 tktA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transketolase YP_002116031.1 3144650 R 439843 CDS YP_008119800.1 513549418 3146917..3147675 1 NC_011094.1 peptidase 3147675 439843003307 SeSA_A3257 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase YP_008119800.1 3146917 D 439843 CDS YP_002116032.1 194737145 complement(3147776..3148696) 1 NC_011094.1 catalyzes the formation of putrescine from agmatine; agmatinase 3148696 speB 439843003308 speB Salmonella enterica subsp. enterica serovar Schwarzengrund str. agmatinase YP_002116032.1 3147776 R 439843 CDS YP_002116033.1 194735567 complement(3148693..3148833) 1 NC_011094.1 identified by glimmer; hypothetical protein 3148833 439843003309 SeSA_A3259 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116033.1 3148693 R 439843 CDS YP_002116034.2 449306326 complement(3148924..3150900) 1 NC_011094.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3150900 speA 439843003310 speA Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine decarboxylase YP_002116034.2 3148924 R 439843 CDS YP_002116035.1 194734213 complement(3150909..3151040) 1 NC_011094.1 hypothetical protein 3151040 439843003311 SeSA_A3261 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116035.1 3150909 R 439843 CDS YP_002116036.1 194735593 3151374..3151541 1 NC_011094.1 hypothetical protein 3151541 439843003312 SeSA_A3262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116036.1 3151374 D 439843 CDS YP_002116037.1 194733921 3151690..3152844 1 NC_011094.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3152844 metK 439843003313 metK Salmonella enterica subsp. enterica serovar Schwarzengrund str. S-adenosylmethionine synthetase YP_002116037.1 3151690 D 439843 CDS YP_002116038.1 194734284 complement(3152872..3152997) 1 NC_011094.1 identified by glimmer; hypothetical protein 3152997 439843003314 SeSA_A3264 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116038.1 3152872 R 439843 CDS YP_002116039.1 194734956 3153337..3154731 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3154731 galP 439843003315 galP Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactose-proton symporter YP_002116039.1 3153337 D 439843 CDS YP_002116040.1 194738157 3154810..3155307 1 NC_011094.1 identified by match to protein family HMM PF03926; hypothetical protein 3155307 sprT 439843003316 sprT Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116040.1 3154810 D 439843 CDS YP_002116041.1 194736706 3155402..3156109 1 NC_011094.1 identified by match to protein family HMM PF04231; endonuclease I 3156109 endA 439843003317 endA Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease I YP_002116041.1 3155402 D 439843 CDS YP_002116042.1 194737195 3156138..3156917 1 NC_011094.1 'in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase'; 16S ribosomal RNA methyltransferase RsmE 3156917 439843003318 SeSA_A3268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S ribosomal RNA methyltransferase RsmE YP_002116042.1 3156138 D 439843 CDS YP_002116043.1 194735153 3156937..3157884 1 NC_011094.1 'catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione'; glutathione synthetase 3157884 gshB 439843003319 gshB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione synthetase YP_002116043.1 3156937 D 439843 CDS YP_002116044.1 194735653 3158100..3158663 1 NC_011094.1 identified by match to protein family HMM PF02622; hypothetical protein 3158663 439843003320 SeSA_A3270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116044.1 3158100 D 439843 CDS YP_002116045.1 194734127 3158663..3159079 1 NC_011094.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 3159079 439843003321 SeSA_A3271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. holliday junction resolvase-like protein YP_002116045.1 3158663 D 439843 CDS YP_002116046.1 194735680 complement(3159126..3159812) 1 NC_011094.1 identified by match to protein family HMM PF09339; regulatory protein IclR 3159812 439843003322 SeSA_A3272 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein IclR YP_002116046.1 3159126 R 439843 CDS YP_002116047.1 194734156 complement(3159940..3160920) 1 NC_011094.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein 3160920 439843003323 SeSA_A3273 Salmonella enterica subsp. enterica serovar Schwarzengrund str. twitching mobility protein YP_002116047.1 3159940 R 439843 CDS YP_002116048.1 194734660 3160938..3161642 1 NC_011094.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase 3161642 439843003324 SeSA_A3274 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alanine racemase YP_002116048.1 3160938 D 439843 CDS YP_002116049.1 194738227 3161661..3162227 1 NC_011094.1 identified by match to protein family HMM PF02325; hypothetical protein 3162227 439843003325 SeSA_A3275 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116049.1 3161661 D 439843 CDS YP_002116050.1 194735973 3162224..3162514 1 NC_011094.1 identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3162514 439843003326 SeSA_A3276 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116050.1 3162224 D 439843 CDS YP_002116051.1 194736901 3162522..3163115 1 NC_011094.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3163115 rdgB 439843003327 rdgB Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribonucleotide triphosphate pyrophosphatase YP_002116051.1 3162522 D 439843 CDS YP_002116052.1 194737657 3163108..3164244 1 NC_011094.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3164244 439843003328 SeSA_A3278 Salmonella enterica subsp. enterica serovar Schwarzengrund str. coproporphyrinogen III oxidase YP_002116052.1 3163108 D 439843 CDS YP_002116053.1 194737854 complement(3164335..3165342) 1 NC_011094.1 identified by match to protein family HMM PF06717; hypothetical protein 3165342 439843003329 SeSA_A3279 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116053.1 3164335 R 439843 CDS YP_002116054.1 194734155 complement(3165475..3166521) 1 NC_011094.1 'catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis'; L-asparaginase II 3166521 ansB 439843003330 ansB Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-asparaginase II YP_002116054.1 3165475 R 439843 CDS YP_002116055.1 194736353 complement(3166710..3167429) 1 NC_011094.1 hypothetical protein 3167429 439843003331 SeSA_A3281 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116055.1 3166710 R 439843 CDS YP_002116056.1 194736940 complement(3167479..3167805) 1 NC_011094.1 identified by match to protein family HMM PF04320; hypothetical protein 3167805 439843003332 SeSA_A3282 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116056.1 3167479 R 439843 CDS YP_002116057.1 194737272 complement(3167805..3168524) 1 NC_011094.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3168524 trmB 439843003333 trmB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA (guanine-N(7)-)-methyltransferase YP_002116057.1 3167805 R 439843 CDS YP_002116058.1 194737851 3168679..3169731 1 NC_011094.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3169731 mutY 439843003334 mutY Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenine DNA glycosylase YP_002116058.1 3168679 D 439843 CDS YP_002116059.1 194734289 3169759..3170034 1 NC_011094.1 identified by match to protein family HMM PF04362; hypothetical protein 3170034 439843003335 SeSA_A3285 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116059.1 3169759 D 439843 CDS YP_002116060.1 194736451 3170147..3171232 1 NC_011094.1 'Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues'; murein transglycosylase C 3171232 mltC 439843003336 mltC Salmonella enterica subsp. enterica serovar Schwarzengrund str. murein transglycosylase C YP_002116060.1 3170147 D 439843 CDS YP_002116061.1 194736255 complement(3171184..3171303) 1 NC_011094.1 identified by glimmer; hypothetical protein 3171303 439843003337 SeSA_A3287 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116061.1 3171184 R 439843 CDS YP_002116062.1 194737622 3171449..3172705 1 NC_011094.1 identified by match to protein family HMM PF03825; match to protein family HMM TIGR00889; nucleoside permease NupG 3172705 nupG 439843003338 nupG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoside permease NupG YP_002116062.1 3171449 D 439843 CDS YP_002116063.1 194737380 complement(3172767..3174902) 1 NC_011094.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 3174902 speC 439843003339 speC Salmonella enterica subsp. enterica serovar Schwarzengrund str. ornithine decarboxylase YP_002116063.1 3172767 R 439843 CDS YP_002116064.1 194734615 3175176..3175289 1 NC_011094.1 identified by glimmer; hypothetical protein 3175289 439843003340 SeSA_A3290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116064.1 3175176 D 439843 CDS YP_002116065.1 194735241 3175328..3176035 1 NC_011094.1 identified by match to protein family HMM PF04474; hypothetical protein 3176035 439843003341 SeSA_A3291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116065.1 3175328 D 439843 CDS YP_002116066.1 194734587 complement(3176819..3178144) 1 NC_011094.1 identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase 3178144 439843003343 SeSA_A3293 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybutyrate CoA-transferase YP_002116066.1 3176819 R 439843 CDS YP_002116067.1 194738180 complement(3178169..3178696) 1 NC_011094.1 identified by match to protein family HMM PF01575; FkbR2 3178696 439843003344 SeSA_A3294 Salmonella enterica subsp. enterica serovar Schwarzengrund str. FkbR2 YP_002116067.1 3178169 R 439843 CDS YP_002116068.1 194738068 complement(3178720..3179562) 1 NC_011094.1 identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein 3179562 439843003345 SeSA_A3295 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HpcH/HpaI aldolase/citrate lyase family protein YP_002116068.1 3178720 R 439843 CDS YP_002116069.1 194737219 3179654..3180532 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; StmR 3180532 439843003346 SeSA_A3296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. StmR YP_002116069.1 3179654 D 439843 CDS YP_002116070.1 194735305 complement(3180580..3182319) 1 NC_011094.1 identified by match to protein family HMM PF00884; arylsulfatase 3182319 439843003347 SeSA_A3297 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfatase YP_002116070.1 3180580 R 439843 CDS YP_002116071.1 194735302 complement(3182388..3183572) 1 NC_011094.1 identified by match to protein family HMM PF04055; arylsulfatase 3183572 439843003348 SeSA_A3298 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfatase YP_002116071.1 3182388 R 439843 CDS YP_002116072.1 194735656 3184084..3184767 1 NC_011094.1 identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3184767 439843003349 SeSA_A3299 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR family transcriptional regulator YP_002116072.1 3184084 D 439843 CDS YP_002116073.1 194734005 complement(3184872..3185429) 1 NC_011094.1 hypothetical protein 3185429 439843003350 SeSA_A3300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116073.1 3184872 R 439843 CDS YP_002116074.1 194737714 complement(3185407..3186906) 1 NC_011094.1 identified by match to protein family HMM PF00324; transporter 3186906 439843003351 SeSA_A3301 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002116074.1 3185407 R 439843 CDS YP_002116075.1 194737705 complement(3186899..3187042) 1 NC_011094.1 identified by glimmer; hypothetical protein 3187042 439843003352 SeSA_A3302 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116075.1 3186899 R 439843 CDS YP_002116076.1 194738392 complement(3187115..3187489) 1 NC_011094.1 identified by match to protein family HMM PF05899; hypothetical protein 3187489 439843003353 SeSA_A3303 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116076.1 3187115 R 439843 CDS YP_002116077.1 194736502 complement(3187504..3188805) 1 NC_011094.1 identified by match to protein family HMM PF01266; tyramine oxidase 3188805 439843003354 SeSA_A3304 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tyramine oxidase YP_002116077.1 3187504 R 439843 CDS YP_002116078.1 194737102 3188967..3190451 1 NC_011094.1 identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3190451 439843003355 SeSA_A3305 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phenylacetaldehyde dehydrogenase YP_002116078.1 3188967 D 439843 CDS YP_002116079.2 449306327 complement(3190587..3190970) 1 NC_011094.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3190970 iraD 439843003356 iraD Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA replication/recombination/repair protein YP_002116079.2 3190587 R 439843 CDS YP_002116080.1 194734856 complement(3190967..3191452) 1 NC_011094.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344; hypothetical protein 3191452 439843003357 SeSA_A3308 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116080.1 3190967 R 439843 CDS YP_002116081.1 194734729 3191451..3191606 1 NC_011094.1 identified by glimmer; hypothetical protein 3191606 439843003358 SeSA_A3307 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116081.1 3191451 D 439843 CDS YP_002116082.1 194737356 3191760..3191915 1 NC_011094.1 hypothetical protein 3191915 439843003359 SeSA_A3309 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116082.1 3191760 D 439843 CDS YP_002116083.1 194737725 complement(3192178..3193101) 1 NC_011094.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 3193101 439843003360 SeSA_A3310 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide deacetylase YP_002116083.1 3192178 R 439843 CDS YP_002116084.1 194738362 complement(3193140..3194018) 1 NC_011094.1 identified by match to protein family HMM PF00795; amidohydrolase 3194018 439843003361 SeSA_A3311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. amidohydrolase YP_002116084.1 3193140 R 439843 CDS YP_002116085.1 194737268 complement(3194331..3194927) 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator UidR 3194927 439843003362 SeSA_A3312 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator UidR YP_002116085.1 3194331 R 439843 CDS YP_002116086.1 194735430 3195302..3197113 1 NC_011094.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; beta-D-glucuronidase 3197113 439843003363 SeSA_A3313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-D-glucuronidase YP_002116086.1 3195302 D 439843 CDS YP_002116087.1 194735793 3197110..3198483 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; glucuronide transporter 3198483 439843003364 SeSA_A3314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucuronide transporter YP_002116087.1 3197110 D 439843 CDS YP_002116088.1 194734132 3198519..3199784 1 NC_011094.1 outer membrane porin protein 3199784 439843003365 SeSA_A3315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane porin protein YP_002116088.1 3198519 D 439843 CDS YP_002116089.1 194738213 complement(3199864..3201168) 1 NC_011094.1 identified by match to protein family HMM PF07690; hexuronate transporter 3201168 exuT 439843003366 exuT Salmonella enterica subsp. enterica serovar Schwarzengrund str. hexuronate transporter YP_002116089.1 3199864 R 439843 CDS YP_002116090.1 194737716 3201573..3202757 1 NC_011094.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3202757 uxuA 439843003367 uxuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannonate dehydratase YP_002116090.1 3201573 D 439843 CDS YP_002116091.1 194734152 3202868..3204340 1 NC_011094.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3204340 439843003368 SeSA_A3318 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-mannonate oxidoreductase YP_002116091.1 3202868 D 439843 CDS YP_002116092.1 194734239 3204352..3205764 1 NC_011094.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3205764 uxaC 439843003369 uxaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucuronate isomerase YP_002116092.1 3204352 D 439843 CDS YP_002116093.1 194735070 complement(3206064..3207119) 1 NC_011094.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 3207119 439843003370 SeSA_A3320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein YP_002116093.1 3206064 R 439843 CDS YP_002116094.1 194735748 complement(3207789..3209645) 1 NC_011094.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3209645 439843003371 SeSA_A3321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_002116094.1 3207789 R 439843 CDS YP_002116095.1 194734333 3209872..3210738 1 NC_011094.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3210738 439843003372 SeSA_A3322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase YP_002116095.1 3209872 D 439843 CDS YP_002116096.1 194734831 complement(3210806..3211519) 1 NC_011094.1 molybdate ABC transporter substrate-binding protein 3211519 439843003373 SeSA_A3323 Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdate ABC transporter substrate-binding protein YP_002116096.1 3210806 R 439843 CDS YP_002116097.1 194735058 complement(3211516..3212568) 1 NC_011094.1 identified by match to protein family HMM PF01497; periplasmic binding protein 3212568 439843003374 SeSA_A3324 Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic binding protein YP_002116097.1 3211516 R 439843 CDS YP_002116098.1 194736087 complement(3212644..3212892) 1 NC_011094.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG 3212892 hypC 439843003375 hypC Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 accessory protein HypG YP_002116098.1 3212644 R 439843 CDS YP_002116099.1 194736360 complement(3212920..3213261) 1 NC_011094.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3213261 hypA 439843003376 hypA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase nickel incorporation protein HybF YP_002116099.1 3212920 R 439843 CDS YP_002116100.1 194735625 complement(3213254..3213742) 1 NC_011094.1 hydrogenase 2-specific chaperone 3213742 439843003377 SeSA_A3327 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2-specific chaperone YP_002116100.1 3213254 R 439843 CDS YP_002116101.1 194736032 complement(3213735..3214229) 1 NC_011094.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3214229 hybD 439843003378 hybD Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 maturation endopeptidase YP_002116101.1 3213735 R 439843 CDS YP_002116102.1 194735258 complement(3214229..3215932) 1 NC_011094.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3215932 hybC 439843003379 hybC Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 large subunit YP_002116102.1 3214229 R 439843 CDS YP_002116103.1 194737021 complement(3215929..3217107) 1 NC_011094.1 'HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits'; hydrogenase 2 b cytochrome subunit 3217107 hybB 439843003380 hybB Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 b cytochrome subunit YP_002116103.1 3215929 R 439843 CDS YP_002116104.1 194736578 complement(3217097..3218083) 1 NC_011094.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3218083 hybA 439843003381 hybA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 protein HybA YP_002116104.1 3217097 R 439843 CDS YP_002116105.1 194735997 complement(3218086..3219204) 1 NC_011094.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3219204 hyb0 439843003382 hyb0 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrogenase 2 small subunit YP_002116105.1 3218086 R 439843 CDS YP_002116106.1 194735495 complement(3219212..3219397) 1 NC_011094.1 hypothetical protein 3219397 439843003383 SeSA_A3333 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116106.1 3219212 R 439843 CDS YP_002116107.1 194736900 complement(3219394..3219681) 1 NC_011094.1 hypothetical protein 3219681 439843003384 SeSA_A3334 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116107.1 3219394 R 439843 CDS YP_002116108.1 194736435 complement(3219766..3221409) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 3221409 439843003385 SeSA_A3335 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis sensory transducer YP_002116108.1 3219766 R 439843 CDS YP_002116109.1 194737412 complement(3221716..3222210) 1 NC_011094.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein 3222210 439843003386 SeSA_A3336 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116109.1 3221716 R 439843 CDS YP_002116110.1 194734751 complement(3222428..3222931) 1 NC_011094.1 hypothetical protein 3222931 439843003387 SeSA_A3337 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116110.1 3222428 R 439843 CDS YP_002116111.1 194736532 3223035..3223445 1 NC_011094.1 hypothetical protein 3223445 439843003388 SeSA_A3338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116111.1 3223035 D 439843 CDS YP_002116112.1 194735828 3223432..3223836 1 NC_011094.1 hypothetical protein 3223836 439843003389 SeSA_A3339 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116112.1 3223432 D 439843 CDS YP_002116113.1 194737525 3223960..3224844 1 NC_011094.1 identified by match to protein family HMM PF00106; oxidoreductase 3224844 439843003390 SeSA_A3340 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YP_002116113.1 3223960 D 439843 CDS YP_002116114.1 194736731 complement(3224957..3225382) 1 NC_011094.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3225382 exbD 439843003391 exbD Salmonella enterica subsp. enterica serovar Schwarzengrund str. biopolymer transport protein ExbD YP_002116114.1 3224957 R 439843 CDS YP_002116115.1 194733979 complement(3225389..3226123) 1 NC_011094.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3226123 exbB 439843003392 exbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. biopolymer transport protein ExbB YP_002116115.1 3225389 R 439843 CDS YP_002116116.1 194734327 complement(3226116..3226253) 1 NC_011094.1 hypothetical protein 3226253 439843003393 SeSA_A3343 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116116.1 3226116 R 439843 CDS YP_002116117.1 194736125 3226375..3227562 1 NC_011094.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3227562 metC 439843003394 metC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cystathionine beta-lyase YP_002116117.1 3226375 D 439843 CDS YP_002116118.1 194735483 3227702..3228361 1 NC_011094.1 identified by match to protein family HMM PF09335; hypothetical protein 3228361 439843003395 SeSA_A3345 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116118.1 3227702 D 439843 CDS YP_008119801.1 513549419 complement(3228425..3229324) 1 NC_011094.1 transcriptional regulator 3229324 439843003396 SeSA_A3346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_008119801.1 3228425 R 439843 CDS YP_002116119.1 194734907 complement(3229314..3229430) 1 NC_011094.1 identified by glimmer; hypothetical protein 3229430 439843003397 SeSA_A3347 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116119.1 3229314 R 439843 CDS YP_002116120.1 194736712 3229517..3230680 1 NC_011094.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 3230680 439843003398 SeSA_A3348 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alcohol dehydrogenase YP_002116120.1 3229517 D 439843 CDS YP_002116121.1 194736018 3230786..3231613 1 NC_011094.1 'methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate'; 2,5-diketo-D-gluconate reductase A 3231613 dkgA 439843003399 dkgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,5-diketo-D-gluconate reductase A YP_002116121.1 3230786 D 439843 CDS YP_002116122.1 194736950 3233309..3233764 1 NC_011094.1 identified by match to protein family HMM PF01230; histidine triad (HIT) protein 3233764 439843003401 SeSA_A3351 Salmonella enterica subsp. enterica serovar Schwarzengrund str. histidine triad (HIT) protein YP_002116122.1 3233309 D 439843 CDS YP_002116123.1 194733907 complement(3233900..3236071) 1 NC_011094.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein 3236071 439843003402 SeSA_A3352 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116123.1 3233900 R 439843 CDS YP_002116124.1 194737952 complement(3236206..3237627) 1 NC_011094.1 hypothetical protein 3237627 439843003403 SeSA_A3353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116124.1 3236206 R 439843 CDS YP_002116125.1 194734931 complement(3237692..3239116) 1 NC_011094.1 hypothetical protein 3239116 439843003404 SeSA_A3354 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116125.1 3237692 R 439843 CDS YP_002116126.1 194734425 complement(3239132..3240553) 1 NC_011094.1 hypothetical protein 3240553 439843003405 SeSA_A3355 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116126.1 3239132 R 439843 CDS YP_002116127.1 194736171 complement(3241623..3243035) 1 NC_011094.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI 3243035 439843003408 SeSA_A3358 Salmonella enterica subsp. enterica serovar Schwarzengrund str. repressor protein for FtsI YP_002116127.1 3241623 R 439843 CDS YP_002116128.1 194736594 complement(3243109..3243846) 1 NC_011094.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3243846 plsC 439843003409 plsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002116128.1 3243109 R 439843 CDS YP_002116129.1 194735135 complement(3244102..3246360) 1 NC_011094.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3246360 parC 439843003410 parC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA topoisomerase IV subunit A YP_002116129.1 3244102 R 439843 CDS YP_002116130.1 194735631 complement(3246490..3246882) 1 NC_011094.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 3246882 439843003411 SeSA_A3361 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116130.1 3246490 R 439843 CDS YP_002116131.1 194736474 3247034..3247693 1 NC_011094.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3247693 439843003412 SeSA_A3362 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator QseB YP_002116131.1 3247034 D 439843 CDS YP_002116132.1 194737085 3247690..3249039 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3249039 439843003413 SeSA_A3363 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein QseC YP_002116132.1 3247690 D 439843 CDS YP_002116133.1 194735874 3249146..3249727 1 NC_011094.1 identified by match to protein family HMM PF02525; NADPH-specific quinone oxidoreductase 3249727 439843003414 SeSA_A3364 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADPH-specific quinone oxidoreductase YP_002116133.1 3249146 D 439843 CDS YP_002116134.1 194735864 3249759..3250073 1 NC_011094.1 identified by match to protein family HMM PF03992; hypothetical protein 3250073 439843003415 SeSA_A3365 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116134.1 3249759 D 439843 CDS YP_002116135.1 194734053 complement(3250078..3250194) 1 NC_011094.1 identified by glimmer; hypothetical protein 3250194 439843003416 SeSA_A3366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116135.1 3250078 R 439843 CDS YP_002116136.1 194737821 complement(3250198..3252090) 1 NC_011094.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3252090 parE 439843003417 parE Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA topoisomerase IV subunit B YP_002116136.1 3250198 R 439843 CDS YP_002116137.1 194736103 complement(3252118..3252699) 1 NC_011094.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3252699 yqiA 439843003418 yqiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. esterase YqiA YP_002116137.1 3252118 R 439843 CDS YP_002116138.1 194735638 complement(3252699..3253526) 1 NC_011094.1 identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3253526 icc 439843003419 icc Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_002116138.1 3252699 R 439843 CDS YP_002116139.1 194733940 complement(3253551..3253973) 1 NC_011094.1 identified by match to protein family HMM PF06853; hypothetical protein 3253973 439843003420 SeSA_A3370 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116139.1 3253551 R 439843 CDS YP_002116140.1 194734725 complement(3253970..3254602) 1 NC_011094.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase 3254602 nudF 439843003421 nudF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-ribose pyrophosphatase YP_002116140.1 3253970 R 439843 CDS YP_002116141.1 194735152 3254809..3256278 1 NC_011094.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3256278 tolC 439843003422 tolC Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane channel protein YP_002116141.1 3254809 D 439843 CDS YP_002116142.1 194735623 3256491..3257162 1 NC_011094.1 hypothetical protein 3257162 439843003423 SeSA_A3373 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116142.1 3256491 D 439843 CDS YP_002116143.1 194734262 3257168..3258331 1 NC_011094.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3258331 439843003424 SeSA_A3374 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathionylspermidine synthase YP_002116143.1 3257168 D 439843 CDS YP_002116144.1 194734625 complement(3258393..3259181) 1 NC_011094.1 'seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine'; hypothetical protein 3259181 439843003425 SeSA_A3375 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116144.1 3258393 R 439843 CDS YP_002116145.1 194737840 3259322..3260095 1 NC_011094.1 identified by match to protein family HMM PF02535; zinc transporter ZupT 3260095 439843003426 SeSA_A3376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc transporter ZupT YP_002116145.1 3259322 D 439843 CDS YP_002116146.1 194735398 complement(3260162..3260338) 1 NC_011094.1 hypothetical protein 3260338 439843003427 SeSA_A3377 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116146.1 3260162 R 439843 CDS YP_002116147.1 194735024 3260738..3262534 1 NC_011094.1 identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3262534 439843003428 SeSA_A3378 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfate sulfotransferase YP_002116147.1 3260738 D 439843 CDS YP_002116148.1 194736436 3262554..3263225 1 NC_011094.1 identified by match to protein family HMM PF01323; disulfide isomerase 3263225 439843003429 SeSA_A3379 Salmonella enterica subsp. enterica serovar Schwarzengrund str. disulfide isomerase YP_002116148.1 3262554 D 439843 CDS YP_002116149.1 194735792 3263240..3263917 1 NC_011094.1 disulfide oxidoreductase 3263917 439843003430 SeSA_A3380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. disulfide oxidoreductase YP_002116149.1 3263240 D 439843 CDS YP_002116150.1 194737382 3264131..3264532 1 NC_011094.1 ISPsy11, transposase OrfA 3264532 439843003431 SeSA_A3381 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ISPsy11, transposase OrfA YP_002116150.1 3264131 D 439843 CDS YP_002116151.1 194736745 3264703..3265386 1 NC_011094.1 identified by match to protein family HMM PF00665; integrase, catalytic region 3265386 439843003432 SeSA_A3382 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase, catalytic region YP_002116151.1 3264703 D 439843 CDS YP_002116152.1 194735004 complement(3265403..3266056) 1 NC_011094.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3266056 ribB 439843003433 ribB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002116152.1 3265403 R 439843 CDS YP_002116153.1 194734357 3266493..3266789 1 NC_011094.1 identified by match to protein family HMM PF04380; hypothetical protein 3266789 439843003434 SeSA_A3385 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116153.1 3266493 D 439843 CDS YP_002116154.1 194735843 complement(3266863..3267072) 1 NC_011094.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3267072 439843003435 SeSA_A3386 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen synthesis protein GlgS YP_002116154.1 3266863 R 439843 CDS YP_002116155.1 194735212 3267330..3267950 1 NC_011094.1 identified by match to protein family HMM PF07290; hypothetical protein 3267950 439843003436 SeSA_A3387 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116155.1 3267330 D 439843 CDS YP_002116156.1 194735417 3267969..3269648 1 NC_011094.1 identified by match to protein family HMM PF01145; hypothetical protein 3269648 439843003437 SeSA_A3388 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116156.1 3267969 D 439843 CDS YP_002116157.1 194734611 complement(3270107..3271540) 1 NC_011094.1 'catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose'; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3271540 439843003439 SeSA_A3390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_002116157.1 3270107 R 439843 CDS YP_002116158.1 194737007 complement(3271588..3274431) 1 NC_011094.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3274431 glnE 439843003440 glnE Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_002116158.1 3271588 R 439843 CDS YP_002116159.1 194736558 complement(3274549..3275850) 1 NC_011094.1 identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase 3275850 439843003441 SeSA_A3392 Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylate cyclase YP_002116159.1 3274549 R 439843 CDS YP_002116160.1 194738282 3276092..3276706 1 NC_011094.1 identified by match to protein family HMM PF08239; signal transduction protein 3276706 439843003442 SeSA_A3393 Salmonella enterica subsp. enterica serovar Schwarzengrund str. signal transduction protein YP_002116160.1 3276092 D 439843 CDS YP_002116161.1 194736807 3276769..3278010 1 NC_011094.1 'catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases'; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3278010 cca 439843003443 cca Salmonella enterica subsp. enterica serovar Schwarzengrund str. multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002116161.1 3276769 D 439843 CDS YP_002116162.1 194734602 complement(3278114..3278935) 1 NC_011094.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 3278935 bacA 439843003444 bacA Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP pyrophosphate phosphatase YP_002116162.1 3278114 R 439843 CDS YP_002116163.1 194733963 complement(3279033..3279392) 1 NC_011094.1 'catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin'; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3279392 folB 439843003445 folB Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_002116163.1 3279033 R 439843 CDS YP_002116164.1 194735889 3279499..3280116 1 NC_011094.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3280116 439843003446 SeSA_A3397 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate acyltransferase PlsY YP_002116164.1 3279499 D 439843 CDS YP_002116165.1 194735240 complement(3280339..3281352) 1 NC_011094.1 'in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity'; DNA-binding/iron metalloprotein/AP endonuclease 3281352 gcp 439843003447 gcp Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding/iron metalloprotein/AP endonuclease YP_002116165.1 3280339 R 439843 CDS YP_002116166.1 194735467 3281580..3281795 1 NC_011094.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3281795 rpsU 439843003448 rpsU Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S21 YP_002116166.1 3281580 D 439843 CDS YP_002116167.1 194735480 3282031..3283776 1 NC_011094.1 synthesizes RNA primers at the replication forks; DNA primase 3283776 dnaG 439843003449 dnaG Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA primase YP_002116167.1 3282031 D 439843 CDS YP_002116168.1 194736124 3283926..3285773 1 NC_011094.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3285773 rpoD 439843003450 rpoD Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase sigma factor RpoD YP_002116168.1 3283926 D 439843 CDS YP_002116169.1 194734340 complement(3285897..3286403) 1 NC_011094.1 identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase 3286403 439843003451 SeSA_A3402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. G/U mismatch-specific DNA glycosylase YP_002116169.1 3285897 R 439843 CDS YP_002116170.1 194737378 complement(3286684..3287451) 1 NC_011094.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein 3287451 439843003453 SeSA_A3404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. siderophore-interacting protein YP_002116170.1 3286684 R 439843 CDS YP_002116171.1 194736657 3287686..3288330 1 NC_011094.1 identified by match to protein family HMM PF03551; transcriptional regulator, PadR family protein 3288330 439843003454 SeSA_A3405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, PadR family protein YP_002116171.1 3287686 D 439843 CDS YP_002116172.1 194736403 complement(3288327..3289895) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II 3289895 439843003455 SeSA_A3406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein II YP_002116172.1 3288327 R 439843 CDS YP_002116173.1 194737278 complement(3290282..3291802) 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor 3291802 439843003456 SeSA_A3407 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aerotaxis receptor YP_002116173.1 3290282 R 439843 CDS YP_002116174.1 194735369 3291829..3291969 1 NC_011094.1 hypothetical protein 3291969 439843003457 SeSA_A3408 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116174.1 3291829 D 439843 CDS YP_002116175.1 194734195 3292232..3293611 1 NC_011094.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3293611 ygjG 439843003458 ygjG Salmonella enterica subsp. enterica serovar Schwarzengrund str. putrescine--2-oxoglutarate aminotransferase YP_002116175.1 3292232 D 439843 CDS YP_002116176.1 194735724 3293782..3295800 1 NC_011094.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3295800 439843003459 SeSA_A3410 Salmonella enterica subsp. enterica serovar Schwarzengrund str. FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein YP_002116176.1 3293782 D 439843 CDS YP_002116177.1 194735079 complement(3295881..3297017) 1 NC_011094.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein 3297017 439843003460 SeSA_A3411 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase family protein YP_002116177.1 3295881 R 439843 CDS YP_002116178.1 194735019 3297103..3297600 1 NC_011094.1 identified by match to protein family HMM PF01863; hypothetical protein 3297600 439843003461 SeSA_A3412 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116178.1 3297103 D 439843 CDS YP_002116179.2 449306328 3297752..3298444 1 NC_011094.1 identified by match to protein family HMM PF02698; hypothetical protein 3298444 439843003462 SeSA_A3413 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116179.2 3297752 D 439843 CDS YP_002116180.1 194737708 3298496..3299530 1 NC_011094.1 identified by match to protein family HMM PF01408; oxidoreductase YgjR 3299530 439843003463 SeSA_A3414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YgjR YP_002116180.1 3298496 D 439843 CDS YP_002116181.1 194737550 3299801..3300769 1 NC_011094.1 identified by match to protein family HMM PF03741; inner membrane protein alx 3300769 439843003464 SeSA_A3415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane protein alx YP_002116181.1 3299801 D 439843 CDS YP_002116182.1 194736527 3301024..3302268 1 NC_011094.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3302268 439843003465 SeSA_A3416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine/threonine transporter SstT YP_002116182.1 3301024 D 439843 CDS YP_002116183.1 194735796 3302718..3303380 1 NC_011094.1 identified by match to protein family HMM PF09335; hypothetical protein 3303380 439843003466 SeSA_A3417 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116183.1 3302718 D 439843 CDS YP_002116184.1 194735260 3303441..3303767 1 NC_011094.1 hypothetical protein 3303767 439843003467 SeSA_A3418 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116184.1 3303441 D 439843 CDS YP_002116185.1 194735011 3303912..3304280 1 NC_011094.1 identified by match to protein family HMM PF06476; hypothetical protein 3304280 439843003468 SeSA_A3419 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116185.1 3303912 D 439843 CDS YP_002116186.1 194738224 3304322..3304627 1 NC_011094.1 identified by match to protein family HMM PF05957; hypothetical protein 3304627 439843003469 SeSA_A3420 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116186.1 3304322 D 439843 CDS YP_002116187.1 194737867 3304630..3305028 1 NC_011094.1 hypothetical protein 3305028 439843003470 SeSA_A3421 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116187.1 3304630 D 439843 CDS YP_002116188.1 194733997 3305025..3305324 1 NC_011094.1 hypothetical protein 3305324 439843003471 SeSA_A3422 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116188.1 3305025 D 439843 CDS YP_002116189.1 194734887 3305479..3305964 1 NC_011094.1 identified by match to protein family HMM PF07681; hypothetical protein 3305964 439843003472 SeSA_A3423 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116189.1 3305479 D 439843 CDS YP_002116190.1 194735090 3306032..3307018 1 NC_011094.1 hypothetical protein 3307018 439843003473 SeSA_A3424 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116190.1 3306032 D 439843 CDS YP_002116191.1 194735837 3307142..3307507 1 NC_011094.1 identified by match to protein family HMM PF05656; hypothetical protein 3307507 439843003474 SeSA_A3425 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116191.1 3307142 D 439843 CDS YP_002116192.1 194736297 complement(3307546..3308442) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family protein 3308442 439843003475 SeSA_A3426 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002116192.1 3307546 R 439843 CDS YP_002116193.1 194736530 3308547..3309248 1 NC_011094.1 identified by match to protein family HMM PF02678; pirin 3309248 439843003476 SeSA_A3427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pirin YP_002116193.1 3308547 D 439843 CDS YP_002116194.1 194737008 3309272..3309436 1 NC_011094.1 hypothetical protein 3309436 439843003477 SeSA_A3428 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116194.1 3309272 D 439843 CDS YP_002116195.1 194737341 complement(3309549..3310859) 1 NC_011094.1 identified by match to protein family HMM PF06354; hypothetical protein 3310859 439843003478 SeSA_A3429 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116195.1 3309549 R 439843 CDS YP_002116196.1 194736541 complement(3310885..3312324) 1 NC_011094.1 identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO 3312324 439843003479 SeSA_A3430 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YhaO YP_002116196.1 3310885 R 439843 CDS YP_002116197.1 194737040 complement(3312532..3313896) 1 NC_011094.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3313896 439843003480 SeSA_A3431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-serine ammonia-lyase YP_002116197.1 3312532 R 439843 CDS YP_002116198.1 194735585 complement(3313966..3316260) 1 NC_011094.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 3316260 pflB 439843003481 pflB Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate acetyltransferase YP_002116198.1 3313966 R 439843 CDS YP_002116199.1 194736109 complement(3316294..3317502) 1 NC_011094.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3317502 ackA 439843003482 ackA Salmonella enterica subsp. enterica serovar Schwarzengrund str. propionate/acetate kinase YP_002116199.1 3316294 R 439843 CDS YP_002116200.1 194735734 complement(3317569..3318900) 1 NC_011094.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3318900 tdcC 439843003483 tdcC Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine/serine transporter TdcC YP_002116200.1 3317569 R 439843 CDS YP_002116201.1 194734134 complement(3318921..3319910) 1 NC_011094.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3319910 tdcB 439843003484 tdcB Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine dehydratase YP_002116201.1 3318921 R 439843 CDS YP_002116202.1 194734605 complement(3320008..3320946) 1 NC_011094.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3320946 439843003485 SeSA_A3436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator TdcA YP_002116202.1 3320008 R 439843 CDS YP_002116203.1 194737634 3321578..3321706 1 NC_011094.1 identified by glimmer; hypothetical protein 3321706 439843003486 SeSA_A3437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116203.1 3321578 D 439843 CDS YP_008119802.1 513549420 complement(3322409..3323554) 1 NC_011094.1 glycerate kinase 3323554 439843003489 SeSA_A3440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerate kinase YP_008119802.1 3322409 R 439843 CDS YP_002116204.1 194734463 complement(3323652..3324542) 1 NC_011094.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3324542 garR 439843003490 garR Salmonella enterica subsp. enterica serovar Schwarzengrund str. tartronate semialdehyde reductase YP_002116204.1 3323652 R 439843 CDS YP_002116205.1 194734144 complement(3324568..3325338) 1 NC_011094.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3325338 garL 439843003491 garL Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_002116205.1 3324568 R 439843 CDS YP_002116206.1 194737253 3325521..3325640 1 NC_011094.1 identified by glimmer; hypothetical protein 3325640 439843003492 SeSA_A3443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116206.1 3325521 D 439843 CDS YP_002116207.1 194736547 3325868..3327439 1 NC_011094.1 identified by match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248; galactarate dehydratase 3327439 garD 439843003493 garD Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactarate dehydratase YP_002116207.1 3325868 D 439843 CDS YP_002116208.1 194737038 3327697..3328551 1 NC_011094.1 'catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway'; tagatose-bisphosphate aldolase 3328551 gatY 439843003494 gatY Salmonella enterica subsp. enterica serovar Schwarzengrund str. tagatose-bisphosphate aldolase YP_002116208.1 3327697 D 439843 CDS YP_002116209.1 194736549 3328671..3329942 1 NC_011094.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3329942 439843003495 SeSA_A3446 Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit YP_002116209.1 3328671 D 439843 CDS YP_002116210.1 194735771 3329957..3330421 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3330421 439843003496 SeSA_A3447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system galactitol-specific transporter subunit IIA YP_002116210.1 3329957 D 439843 CDS YP_002116211.1 194735297 3330452..3330736 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3330736 439843003497 SeSA_A3448 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system galactitol-specific transporter subunit IIB YP_002116211.1 3330452 D 439843 CDS YP_002116212.1 194734480 3330740..3332113 1 NC_011094.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3332113 439843003498 SeSA_A3449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system galactitol-specific transporter subunit IIC YP_002116212.1 3330740 D 439843 CDS YP_002116213.1 194734003 3332157..3333200 1 NC_011094.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3333200 439843003499 SeSA_A3450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactitol-1-phosphate dehydrogenase YP_002116213.1 3332157 D 439843 CDS YP_002116214.1 194735688 3333311..3334084 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3334084 439843003500 SeSA_A3451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. galactitol utilization operon repressor YP_002116214.1 3333311 D 439843 CDS YP_002116215.1 194735040 complement(3334242..3335105) 1 NC_011094.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 3335105 439843003501 SeSA_A3452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116215.1 3334242 R 439843 CDS YP_002116216.1 194736652 3335169..3337211 1 NC_011094.1 identified by match to protein family HMM PF04348; LppC superfamily protein 3337211 439843003502 SeSA_A3453 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LppC superfamily protein YP_002116216.1 3335169 D 439843 CDS YP_002116217.1 194736035 3337169..3337564 1 NC_011094.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3337564 439843003503 SeSA_A3454 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116217.1 3337169 D 439843 CDS YP_002116218.1 194737613 3337586..3338176 1 NC_011094.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3338176 diaA 439843003504 diaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DnaA initiator-associating protein DiaA YP_002116218.1 3337586 D 439843 CDS YP_002116219.1 194736977 3338186..3338761 1 NC_011094.1 identified by match to protein family HMM PF04972; hypothetical protein 3338761 439843003505 SeSA_A3456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116219.1 3338186 D 439843 CDS YP_002116220.1 194734097 complement(3338828..3339463) 1 NC_011094.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 3339463 439843003506 SeSA_A3457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD dependent epimerase/dehydratase family protein YP_002116220.1 3338828 R 439843 CDS YP_002116221.1 194736340 3339594..3340112 1 NC_011094.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular peptidase, PfpI family protein 3340112 439843003507 SeSA_A3458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. intracellular peptidase, PfpI family protein YP_002116221.1 3339594 D 439843 CDS YP_002116222.1 194737964 complement(3340092..3340535) 1 NC_011094.1 hypothetical protein 3340535 439843003508 SeSA_A3460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116222.1 3340092 R 439843 CDS YP_002116223.1 194734158 3340528..3340890 1 NC_011094.1 identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3340890 439843003509 SeSA_A3459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GIY-YIG nuclease superfamily protein YP_002116223.1 3340528 D 439843 CDS YP_002116224.1 194735744 complement(3340877..3341380) 1 NC_011094.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3341380 439843003510 SeSA_A3461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GNAT family acetyltransferase YP_002116224.1 3340877 R 439843 CDS YP_002116225.1 194734551 complement(3341374..3341898) 1 NC_011094.1 identified by match to protein family HMM PF02036; sterol-binding protein 3341898 439843003511 SeSA_A3462 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sterol-binding protein YP_002116225.1 3341374 R 439843 CDS YP_002116226.1 194735479 3342115..3343110 1 NC_011094.1 identified by match to protein family HMM PF01136; peptidase, U32 family protein 3343110 439843003512 SeSA_A3463 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase, U32 family protein YP_002116226.1 3342115 D 439843 CDS YP_002116227.1 194735832 3343119..3343997 1 NC_011094.1 identified by match to protein family HMM PF01136; peptidase, U32 family protein 3343997 439843003513 SeSA_A3464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase, U32 family protein YP_002116227.1 3343119 D 439843 CDS YP_002116228.1 194737207 3344174..3345181 1 NC_011094.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558; hypothetical protein 3345181 439843003514 SeSA_A3465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116228.1 3344174 D 439843 CDS YP_002116229.1 194735590 complement(3345272..3346516) 1 NC_011094.1 tryptophan transporter of high affinity; tryptophan permease 3346516 mtr 439843003515 mtr Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophan permease YP_002116229.1 3345272 R 439843 CDS YP_002116230.1 194736232 complement(3346670..3348559) 1 NC_011094.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3348559 deaD 439843003516 deaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase DeaD YP_002116230.1 3346670 R 439843 CDS YP_002116231.1 194736849 complement(3348738..3349622) 1 NC_011094.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3349622 nlpI 439843003517 nlpI Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein NlpI YP_002116231.1 3348738 R 439843 CDS YP_008119803.1 513549421 complement(3349732..3351897) 1 NC_011094.1 polyribonucleotide nucleotidyltransferase 3351897 pnp 439843003518 pnp Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyribonucleotide nucleotidyltransferase YP_008119803.1 3349732 R 439843 CDS YP_002116232.1 194737298 complement(3352109..3352378) 1 NC_011094.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3352378 rpsO 439843003520 rpsO Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S15 YP_002116232.1 3352109 R 439843 CDS YP_002116233.1 194738144 complement(3352529..3353473) 1 NC_011094.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3353473 truB 439843003521 truB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA pseudouridine synthase B YP_002116233.1 3352529 R 439843 CDS YP_002116234.1 194737644 complement(3353473..3353874) 1 NC_011094.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3353874 rbfA 439843003522 rbfA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome-binding factor A YP_002116234.1 3353473 R 439843 CDS YP_002116235.1 194737198 complement(3353904..3354023) 1 NC_011094.1 identified by glimmer; hypothetical protein 3354023 439843003523 SeSA_A3475 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116235.1 3353904 R 439843 CDS YP_002116236.1 194736720 complement(3354026..3356704) 1 NC_011094.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3356704 infB 439843003524 infB Salmonella enterica subsp. enterica serovar Schwarzengrund str. translation initiation factor IF-2 YP_002116236.1 3354026 R 439843 CDS YP_002116237.1 194733934 complement(3356729..3358231) 1 NC_011094.1 'modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination'; transcription elongation factor NusA 3358231 nusA 439843003525 nusA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription elongation factor NusA YP_002116237.1 3356729 R 439843 CDS YP_002116238.1 194735644 complement(3358259..3358711) 1 NC_011094.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3358711 439843003526 SeSA_A3478 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116238.1 3358259 R 439843 CDS YP_002116239.1 194737645 3359339..3360682 1 NC_011094.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3360682 argG 439843003528 argG Salmonella enterica subsp. enterica serovar Schwarzengrund str. argininosuccinate synthase YP_002116239.1 3359339 D 439843 CDS YP_002116240.1 194734665 complement(3360984..3361316) 1 NC_011094.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 3361316 secG 439843003530 secG Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecG YP_002116240.1 3360984 R 439843 CDS YP_002116241.1 194735714 complement(3361539..3362876) 1 NC_011094.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3362876 glmM 439843003531 glmM Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglucosamine mutase YP_002116241.1 3361539 R 439843 CDS YP_002116242.1 194737167 complement(3362869..3363717) 1 NC_011094.1 'catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate'; dihydropteroate synthase 3363717 folP 439843003532 folP Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydropteroate synthase YP_002116242.1 3362869 R 439843 CDS YP_002116243.1 194736041 3363670..3363798 1 NC_011094.1 identified by glimmer; hypothetical protein 3363798 439843003533 SeSA_A3484 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116243.1 3363670 D 439843 CDS YP_002116244.1 194735810 complement(3363822..3365765) 1 NC_011094.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3365765 hflB 439843003534 hflB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent metalloprotease YP_002116244.1 3363822 R 439843 CDS YP_002116245.1 194736185 complement(3365860..3366486) 1 NC_011094.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 3366486 rrmJ 439843003535 rrmJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA methyltransferase YP_002116245.1 3365860 R 439843 CDS YP_002116246.1 194737292 3366574..3366906 1 NC_011094.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3366906 439843003536 SeSA_A3488 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA-binding protein YhbY YP_002116246.1 3366574 D 439843 CDS YP_002116247.1 194737942 complement(3367062..3367538) 1 NC_011094.1 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreA 3367538 greA 439843003537 greA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription elongation factor GreA YP_002116247.1 3367062 R 439843 CDS YP_002116248.1 194734364 complement(3367592..3367720) 1 NC_011094.1 identified by glimmer; hypothetical protein 3367720 439843003538 SeSA_A3490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116248.1 3367592 R 439843 CDS YP_002116249.1 194734972 3367786..3369219 1 NC_011094.1 'penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains'; D-alanyl-D-alanine carboxypeptidase 3369219 dacB 439843003539 dacB Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanyl-D-alanine carboxypeptidase YP_002116249.1 3367786 D 439843 CDS YP_002116250.1 194737561 3369228..3369353 1 NC_011094.1 identified by glimmer; hypothetical protein 3369353 439843003540 SeSA_A3492 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116250.1 3369228 D 439843 CDS YP_002116251.1 194738014 complement(3369350..3370522) 1 NC_011094.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3370522 obgE 439843003541 obgE Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTPase ObgE YP_002116251.1 3369350 R 439843 CDS YP_002116252.1 194734771 complement(3370538..3371503) 1 NC_011094.1 identified by match to protein family HMM PF00892; transporter 3371503 439843003542 SeSA_A3494 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002116252.1 3370538 R 439843 CDS YP_002116253.1 194734741 complement(3371633..3371890) 1 NC_011094.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3371890 rpmA 439843003543 rpmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L27 YP_002116253.1 3371633 R 439843 CDS YP_002116254.1 194735604 complement(3371910..3372221) 1 NC_011094.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 3372221 rplU 439843003544 rplU Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L21 YP_002116254.1 3371910 R 439843 CDS YP_002116255.2 449306329 3372479..3373450 1 NC_011094.1 identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3373450 ispB 439843003545 ispB Salmonella enterica subsp. enterica serovar Schwarzengrund str. octaprenyl diphosphate synthase YP_002116255.2 3372479 D 439843 CDS YP_002116256.1 194736075 3373682..3373969 1 NC_011094.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3373969 439843003546 SeSA_A3498 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator Nlp YP_002116256.1 3373682 D 439843 CDS YP_002116257.1 194736799 complement(3374027..3375286) 1 NC_011094.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3375286 murA 439843003547 murA Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002116257.1 3374027 R 439843 CDS YP_002116258.1 194737647 complement(3375340..3375594) 1 NC_011094.1 identified by match to protein family HMM PF01722; hypothetical protein 3375594 439843003548 SeSA_A3500 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116258.1 3375340 R 439843 CDS YP_002116259.1 194738002 complement(3375782..3376078) 1 NC_011094.1 anti-sigma factor antagonist 3376078 439843003549 SeSA_A3501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anti-sigma factor antagonist YP_002116259.1 3375782 R 439843 CDS YP_002116260.1 194736628 complement(3376078..3376713) 1 NC_011094.1 identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D 3376713 ttg2D 439843003550 ttg2D Salmonella enterica subsp. enterica serovar Schwarzengrund str. toluene tolerance protein Ttg2D YP_002116260.1 3376078 R 439843 CDS YP_002116261.1 194737260 complement(3376732..3377283) 1 NC_011094.1 identified by match to protein family HMM PF02470; Mce family protein 3377283 439843003551 SeSA_A3503 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Mce family protein YP_002116261.1 3376732 R 439843 CDS YP_002116262.1 194737604 complement(3377288..3378070) 1 NC_011094.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease 3378070 439843003552 SeSA_A3504 Salmonella enterica subsp. enterica serovar Schwarzengrund str. toluene ABC transporter permease YP_002116262.1 3377288 R 439843 CDS YP_002116263.1 194738105 complement(3378078..3378890) 1 NC_011094.1 ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein 3378890 439843003553 SeSA_A3505 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002116263.1 3378078 R 439843 CDS YP_002116264.1 194735112 3379103..3380080 1 NC_011094.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3380080 439843003554 SeSA_A3506 Salmonella enterica subsp. enterica serovar Schwarzengrund str. calcium/sodium:proton antiporter YP_002116264.1 3379103 D 439843 CDS YP_002116265.1 194736831 3380094..3381080 1 NC_011094.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3381080 kdsD 439843003555 kdsD Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-arabinose 5-phosphate isomerase YP_002116265.1 3380094 D 439843 CDS YP_002116266.1 194735665 3381101..3381667 1 NC_011094.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3381667 kdsC 439843003556 kdsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002116266.1 3381101 D 439843 CDS YP_002116267.1 194736180 3381664..3382239 1 NC_011094.1 identified by match to protein family HMM PF06835; hypothetical protein 3382239 439843003557 SeSA_A3509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116267.1 3381664 D 439843 CDS YP_002116268.1 194737776 3382208..3382762 1 NC_011094.1 'LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system'; lipopolysaccharide transport periplasmic protein LptA 3382762 lptA 439843003558 lptA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide transport periplasmic protein LptA YP_002116268.1 3382208 D 439843 CDS YP_002116269.1 194735191 3382769..3383494 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3383494 lptB 439843003559 lptB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002116269.1 3382769 D 439843 CDS YP_002116270.1 194737141 3383542..3384975 1 NC_011094.1 'sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen'; RNA polymerase factor sigma-54 3384975 rpoN 439843003560 rpoN Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase factor sigma-54 YP_002116270.1 3383542 D 439843 CDS YP_002116271.1 194736492 3384998..3385285 1 NC_011094.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3385285 yfiA 439843003561 yfiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. sigma(54) modulation protein YP_002116271.1 3384998 D 439843 CDS YP_002116272.1 194735866 3385403..3385894 1 NC_011094.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3385894 ptsN 439843003562 ptsN Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002116272.1 3385403 D 439843 CDS YP_002116273.1 194734943 3385940..3386794 1 NC_011094.1 identified by match to protein family HMM PF03668; hypothetical protein 3386794 439843003563 SeSA_A3515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116273.1 3385940 D 439843 CDS YP_002116274.1 194736357 3386791..3387063 1 NC_011094.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 3387063 ptsO 439843003564 ptsO Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system phosphohistidinoprotein-hexose phosphotransferase Npr YP_002116274.1 3386791 D 439843 CDS YP_002116275.1 194737893 3387313..3387945 1 NC_011094.1 hypothetical protein 3387945 439843003565 SeSA_A3517 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116275.1 3387313 D 439843 CDS YP_002116276.1 194735750 complement(3388020..3388748) 1 NC_011094.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3388748 mtgA 439843003566 mtgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. monofunctional biosynthetic peptidoglycan transglycosylase YP_002116276.1 3388020 R 439843 CDS YP_002116277.1 194735088 complement(3388745..3389398) 1 NC_011094.1 identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein 3389398 elbB 439843003567 elbB Salmonella enterica subsp. enterica serovar Schwarzengrund str. isoprenoid biosynthesis protein YP_002116277.1 3388745 R 439843 CDS YP_002116278.1 194734174 complement(3389625..3391961) 1 NC_011094.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3391961 439843003569 SeSA_A3521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aerobic respiration control sensor protein ArcB YP_002116278.1 3389625 R 439843 CDS YP_002116279.1 194734099 complement(3392055..3392984) 1 NC_011094.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein 3392984 439843003570 SeSA_A3522 Salmonella enterica subsp. enterica serovar Schwarzengrund str. radical SAM protein YP_002116279.1 3392055 R 439843 CDS YP_008119804.1 513549422 3393656..3398116 1 NC_011094.1 glutamate synthase subunit alpha 3398116 gltB 439843003571 gltB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate synthase subunit alpha YP_008119804.1 3393656 D 439843 CDS YP_002116280.1 194737546 3398126..3399544 1 NC_011094.1 'glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate'; glutamate synthase subunit beta 3399544 gltD 439843003572 gltD Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate synthase subunit beta YP_002116280.1 3398126 D 439843 CDS YP_002116281.1 194736738 3399752..3400855 1 NC_011094.1 identified by match to protein family HMM PF06250; hypothetical protein 3400855 439843003573 SeSA_A3525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116281.1 3399752 D 439843 CDS YP_002116282.1 194736575 3400875..3402224 1 NC_011094.1 identified by match to protein family HMM PF02133; cytosine permease 3402224 codB 439843003574 codB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytosine permease YP_002116282.1 3400875 D 439843 CDS YP_002116283.1 194737042 3402211..3403491 1 NC_011094.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3403491 439843003575 SeSA_A3527 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytosine deaminase YP_002116283.1 3402211 D 439843 CDS YP_002116284.1 194735321 complement(3403573..3404040) 1 NC_011094.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3404040 439843003576 SeSA_A3528 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116284.1 3403573 R 439843 CDS YP_002116285.1 194735579 complement(3404037..3404912) 1 NC_011094.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3404912 439843003577 SeSA_A3529 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmannosamine kinase YP_002116285.1 3404037 R 439843 CDS YP_002116286.1 194734915 complement(3404909..3405598) 1 NC_011094.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3405598 439843003578 SeSA_A3530 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmannosamine-6-phosphate 2-epimerase YP_002116286.1 3404909 R 439843 CDS YP_002116287.1 194737981 complement(3405645..3407135) 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter 3407135 439843003579 SeSA_A3531 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sialic acid transporter YP_002116287.1 3405645 R 439843 CDS YP_002116288.1 194737314 complement(3407251..3408144) 1 NC_011094.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3408144 nanA 439843003580 nanA Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylneuraminate lyase YP_002116288.1 3407251 R 439843 CDS YP_002116289.2 449306330 complement(3408279..3409070) 1 NC_011094.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3409070 439843003581 SeSA_A3533 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator NanR YP_002116289.2 3408279 R 439843 CDS YP_002116290.1 194734168 complement(3409179..3409679) 1 NC_011094.1 identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor 3409679 sspB 439843003582 sspB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ClpXP protease specificity-enhancing factor YP_002116290.1 3409179 R 439843 CDS YP_002116291.1 194736686 complement(3409685..3410323) 1 NC_011094.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3410323 sspA 439843003583 sspA Salmonella enterica subsp. enterica serovar Schwarzengrund str. stringent starvation protein A YP_002116291.1 3409685 R 439843 CDS YP_002116292.1 194735399 complement(3410637..3411029) 1 NC_011094.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3411029 rpsI 439843003584 rpsI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S9 YP_002116292.1 3410637 R 439843 CDS YP_002116293.1 194737700 complement(3411045..3411473) 1 NC_011094.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3411473 rplM 439843003585 rplM Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L13 YP_002116293.1 3411045 R 439843 CDS YP_002116294.1 194737049 complement(3411775..3412899) 1 NC_011094.1 identified by match to protein family HMM PF03969; ATPase, AFG1 family protein 3412899 439843003586 SeSA_A3538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATPase, AFG1 family protein YP_002116294.1 3411775 R 439843 CDS YP_002116295.1 194735949 3413092..3413490 1 NC_011094.1 identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3413490 439843003587 SeSA_A3539 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome d ubiquinol oxidase subunit III YP_002116295.1 3413092 D 439843 CDS YP_002116296.1 194735465 3413647..3415002 1 NC_011094.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3415002 439843003588 SeSA_A3540 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine endoprotease YP_002116296.1 3413647 D 439843 CDS YP_002116297.1 194734903 3415095..3416165 1 NC_011094.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3416165 degS 439843003589 degS Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine endoprotease YP_002116297.1 3415095 D 439843 CDS YP_002116298.2 449306331 complement(3416199..3416930) 1 NC_011094.1 hypothetical protein 3416930 439843003590 SeSA_A3542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116298.2 3416199 R 439843 CDS YP_002116299.1 194735917 complement(3416950..3418251) 1 NC_011094.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase subunit beta 3418251 439843003591 SeSA_A3543 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase subunit beta YP_002116299.1 3416950 R 439843 CDS YP_002116300.1 194735418 complement(3418264..3420033) 1 NC_011094.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3420033 oadA 439843003592 oadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase YP_002116300.1 3418264 R 439843 CDS YP_002116301.1 194734900 complement(3420049..3420291) 1 NC_011094.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3420291 439843003593 SeSA_A3545 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxaloacetate decarboxylase subunit gamma YP_002116301.1 3420049 R 439843 CDS YP_002116302.1 194735860 complement(3420448..3421065) 1 NC_011094.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3421065 439843003594 SeSA_A3546 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L(+)-tartrate dehydratase subunit beta YP_002116302.1 3420448 R 439843 CDS YP_002116303.1 194735312 complement(3421065..3421964) 1 NC_011094.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3421964 439843003595 SeSA_A3547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tartrate dehydratase subunit alpha YP_002116303.1 3421065 R 439843 CDS YP_002116304.1 194735885 complement(3421997..3423265) 1 NC_011094.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter 3423265 439843003596 SeSA_A3548 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anion transporter YP_002116304.1 3421997 R 439843 CDS YP_002116305.1 194735192 complement(3423476..3424141) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 3424141 439843003597 SeSA_A3549 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116305.1 3423476 R 439843 CDS YP_002116306.1 194734555 complement(3424128..3424757) 1 NC_011094.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 3424757 439843003598 SeSA_A3550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GntR family transcriptional regulator YP_002116306.1 3424128 R 439843 CDS YP_002116307.1 194733909 complement(3424877..3425815) 1 NC_011094.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3425815 mdh 439843003599 mdh Salmonella enterica subsp. enterica serovar Schwarzengrund str. malate dehydrogenase YP_002116307.1 3424877 R 439843 CDS YP_002116308.1 194736699 3426230..3426700 1 NC_011094.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3426700 argR 439843003600 argR Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine repressor ArgR YP_002116308.1 3426230 D 439843 CDS YP_002116309.1 194738204 3427065..3427328 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 3427328 439843003601 SeSA_A3553 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116309.1 3427065 D 439843 CDS YP_002116310.1 194735343 3427432..3427698 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 3427698 439843003602 SeSA_A3554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116310.1 3427432 D 439843 CDS YP_002116311.1 194737005 complement(3427758..3428030) 1 NC_011094.1 barstar 3428030 439843003603 SeSA_A3555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. barstar YP_002116311.1 3427758 R 439843 CDS YP_002116312.1 194737497 complement(3428202..3430169) 1 NC_011094.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3430169 aaeB 439843003604 aaeB Salmonella enterica subsp. enterica serovar Schwarzengrund str. p-hydroxybenzoic acid efflux subunit AaeB YP_002116312.1 3428202 R 439843 CDS YP_002116313.1 194734710 complement(3430175..3431107) 1 NC_011094.1 'with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate'; p-hydroxybenzoic acid efflux subunit AaeA 3431107 aaeA 439843003605 aaeA Salmonella enterica subsp. enterica serovar Schwarzengrund str. p-hydroxybenzoic acid efflux subunit AaeA YP_002116313.1 3430175 R 439843 CDS YP_002116314.1 194738135 complement(3431115..3431318) 1 NC_011094.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3431318 aaeX 439843003606 aaeX Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116314.1 3431115 R 439843 CDS YP_002116315.1 194737638 3431500..3432429 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3432429 aaeR 439843003607 aaeR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002116315.1 3431500 D 439843 CDS YP_002116316.1 194735975 complement(3432551..3433996) 1 NC_011094.1 'responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA'; protease TldD 3433996 tldD 439843003608 tldD Salmonella enterica subsp. enterica serovar Schwarzengrund str. protease TldD YP_002116316.1 3432551 R 439843 CDS YP_002116317.1 194735455 complement(3434141..3437941) 1 NC_011094.1 identified by match to protein family HMM TIGR02099; hypothetical protein 3437941 439843003609 SeSA_A3561 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116317.1 3434141 R 439843 CDS YP_002116318.1 194734919 complement(3438052..3439521) 1 NC_011094.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3439521 cafA 439843003610 cafA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease G YP_002116318.1 3438052 R 439843 CDS YP_002116319.1 194733923 complement(3439511..3440104) 1 NC_011094.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3440104 maf 439843003611 maf Salmonella enterica subsp. enterica serovar Schwarzengrund str. Maf-like protein YP_002116319.1 3439511 R 439843 CDS YP_002116320.1 194737883 complement(3440113..3440604) 1 NC_011094.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3440604 lytS 439843003612 lytS Salmonella enterica subsp. enterica serovar Schwarzengrund str. rod shape-determining protein MreD YP_002116320.1 3440113 R 439843 CDS YP_002116321.1 194737486 complement(3440604..3441656) 1 NC_011094.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3441656 mreC 439843003613 mreC Salmonella enterica subsp. enterica serovar Schwarzengrund str. rod shape-determining protein MreC YP_002116321.1 3440604 R 439843 CDS YP_002116322.1 194736832 complement(3441721..3442764) 1 NC_011094.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3442764 mreB 439843003614 mreB Salmonella enterica subsp. enterica serovar Schwarzengrund str. rod shape-determining protein MreB YP_002116322.1 3441721 R 439843 CDS YP_002116323.1 194735259 complement(3443072..3445012) 1 NC_011094.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3445012 439843003615 SeSA_A3567 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein CsrD YP_002116323.1 3443072 R 439843 CDS YP_002116324.1 194735657 3445216..3446190 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3446190 439843003616 SeSA_A3568 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116324.1 3445216 D 439843 CDS YP_002116325.1 194734390 3446303..3447307 1 NC_011094.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3447307 439843003617 SeSA_A3569 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite oxidase subunit YedY YP_002116325.1 3446303 D 439843 CDS YP_002116326.1 194734643 3447308..3447907 1 NC_011094.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3447907 439843003618 SeSA_A3570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfite oxidase subunit YedZ YP_002116326.1 3447308 D 439843 CDS YP_002116327.1 194737764 3448300..3448770 1 NC_011094.1 'composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3448770 accB 439843003619 accB Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002116327.1 3448300 D 439843 CDS YP_002116328.1 194737082 3448781..3450130 1 NC_011094.1 'an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism'; acetyl-CoA carboxylase biotin carboxylase subunit 3450130 accC 439843003620 accC Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA carboxylase biotin carboxylase subunit YP_002116328.1 3448781 D 439843 CDS YP_002116329.1 194735537 3450239..3450481 1 NC_011094.1 identified by match to protein family HMM PF06196; hypothetical protein 3450481 439843003621 SeSA_A3573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116329.1 3450239 D 439843 CDS YP_002116330.1 194735262 3450471..3451922 1 NC_011094.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3451922 panF 439843003622 panF Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium/panthothenate symporter YP_002116330.1 3450471 D 439843 CDS YP_002116331.1 194734237 3451934..3452815 1 NC_011094.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3452815 prmA 439843003623 prmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L11 methyltransferase YP_002116331.1 3451934 D 439843 CDS YP_002116332.1 194737360 3453477..3454442 1 NC_011094.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3454442 dusB 439843003624 dusB Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-dihydrouridine synthase B YP_002116332.1 3453477 D 439843 CDS YP_002116333.1 194737822 3454468..3454764 1 NC_011094.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3454764 fis 439843003625 fis Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding protein Fis YP_002116333.1 3454468 D 439843 CDS YP_002116334.1 194736425 3454850..3455734 1 NC_011094.1 identified by match to protein family HMM PF01555; methyltransferase 3455734 439843003626 SeSA_A3578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002116334.1 3454850 D 439843 CDS YP_002116335.1 194736867 3455817..3455981 1 NC_011094.1 hypothetical protein 3455981 439843003627 SeSA_A3579 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116335.1 3455817 D 439843 CDS YP_002116336.1 194737523 3456132..3458231 1 NC_011094.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; ggdef domain/eal domain-containing protein 3458231 439843003628 SeSA_A3580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ggdef domain/eal domain-containing protein YP_002116336.1 3456132 D 439843 CDS YP_002116337.1 194734773 complement(3458234..3458896) 1 NC_011094.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR 3458896 439843003629 SeSA_A3581 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator EnvR YP_002116337.1 3458234 R 439843 CDS YP_002116338.1 194733966 complement(3458899..3459060) 1 NC_011094.1 identified by glimmer; hypothetical protein 3459060 439843003630 SeSA_A3582 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116338.1 3458899 R 439843 CDS YP_002116339.1 194734299 3459309..3460466 1 NC_011094.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein E 3460466 439843003631 SeSA_A3583 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acriflavine resistance protein E YP_002116339.1 3459309 D 439843 CDS YP_002116340.1 194736548 3460478..3463591 1 NC_011094.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3463591 439843003632 SeSA_A3584 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AcrB protein YP_002116340.1 3460478 D 439843 CDS YP_002116341.1 194738275 complement(3463689..3463853) 1 NC_011094.1 hypothetical protein 3463853 439843003633 SeSA_A3586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116341.1 3463689 R 439843 CDS YP_002116342.1 194735563 3463829..3464050 1 NC_011094.1 lipoprotein 3464050 439843003634 SeSA_A3585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002116342.1 3463829 D 439843 CDS YP_002116343.1 194735052 complement(3464490..3464624) 1 NC_011094.1 identified by glimmer; hypothetical protein 3464624 439843003635 SeSA_A3587 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116343.1 3464490 R 439843 CDS YP_007443075.1 449306332 3470396..3470950 1 NC_011094.1 hypothetical protein 3470950 439843003642 SeSA_A3596 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_007443075.1 3470396 D 439843 CDS YP_002116344.1 194737493 complement(3470926..3471183) 1 NC_011094.1 identified by match to protein family HMM PF07369; hypothetical protein 3471183 439843003643 SeSA_A3597 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116344.1 3470926 R 439843 CDS YP_002116345.1 194735246 complement(3471180..3471998) 1 NC_011094.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3471998 aroE 439843003644 aroE Salmonella enterica subsp. enterica serovar Schwarzengrund str. shikimate 5-dehydrogenase YP_002116345.1 3471180 R 439843 CDS YP_002116346.1 194734742 complement(3472003..3472575) 1 NC_011094.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor 3472575 439843003645 SeSA_A3599 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome maturation factor YP_002116346.1 3472003 R 439843 CDS YP_002116347.1 194736535 complement(3472580..3473122) 1 NC_011094.1 identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein 3473122 439843003646 SeSA_A3600 Salmonella enterica subsp. enterica serovar Schwarzengrund str. topoisomerase DNA-binding C4 zinc finger domain-containing protein YP_002116347.1 3472580 R 439843 CDS YP_002116348.1 194736060 complement(3473149..3473622) 1 NC_011094.1 identified by match to protein family HMM PF04361; hypothetical protein 3473622 smg 439843003647 smg Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116348.1 3473149 R 439843 CDS YP_002116349.1 194735114 complement(3473594..3474718) 1 NC_011094.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 3474718 439843003648 SeSA_A3602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA protecting protein DprA YP_002116349.1 3473594 R 439843 CDS YP_002116350.1 194734454 3474850..3475359 1 NC_011094.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3475359 def 439843003649 def Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide deformylase YP_002116350.1 3474850 D 439843 CDS YP_002116351.1 194736618 3475375..3476322 1 NC_011094.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3476322 fmt 439843003650 fmt Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionyl-tRNA formyltransferase YP_002116351.1 3475375 D 439843 CDS YP_002116352.1 194736151 3476374..3477663 1 NC_011094.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3477663 sun 439843003651 sun Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S rRNA methyltransferase GidB YP_002116352.1 3476374 D 439843 CDS YP_002116353.1 194737517 3477685..3479061 1 NC_011094.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3479061 trkA 439843003652 trkA Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium transporter peripheral membrane protein YP_002116353.1 3477685 D 439843 CDS YP_002116354.1 194737037 3479203..3479616 1 NC_011094.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein 3479616 mscL 439843003653 mscL Salmonella enterica subsp. enterica serovar Schwarzengrund str. large conductance mechanosensitive channel protein YP_002116354.1 3479203 D 439843 CDS YP_002116355.1 194734612 complement(3479879..3480304) 1 NC_011094.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3480304 zntR 439843003654 zntR Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc-responsive transcriptional regulator YP_002116355.1 3479879 R 439843 CDS YP_002116356.1 194734139 complement(3480315..3480683) 1 NC_011094.1 identified by match to protein family HMM PF09350; hypothetical protein 3480683 439843003655 SeSA_A3609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116356.1 3480315 R 439843 CDS YP_002116357.1 194735675 complement(3480791..3481174) 1 NC_011094.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3481174 rplQ 439843003656 rplQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L17 YP_002116357.1 3480791 R 439843 CDS YP_002116358.1 194735121 complement(3481215..3482204) 1 NC_011094.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3482204 rpoA 439843003657 rpoA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-directed RNA polymerase subunit alpha YP_002116358.1 3481215 R 439843 CDS YP_002116359.1 194734012 complement(3482230..3482850) 1 NC_011094.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3482850 rpsD 439843003658 rpsD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S4 YP_002116359.1 3482230 R 439843 CDS YP_002116360.1 194735800 complement(3482884..3483273) 1 NC_011094.1 'located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3'; 30S ribosomal protein S11 3483273 rpsK 439843003659 rpsK Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S11 YP_002116360.1 3482884 R 439843 CDS YP_002116361.1 194738391 complement(3483290..3483646) 1 NC_011094.1 'located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA'; 30S ribosomal protein S13 3483646 rpsM 439843003660 rpsM Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S13 YP_002116361.1 3483290 R 439843 CDS YP_002116362.1 194734497 complement(3483941..3485272) 1 NC_011094.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3485272 secY 439843003661 secY Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecY YP_002116362.1 3483941 R 439843 CDS YP_002116363.1 194737244 complement(3485280..3485714) 1 NC_011094.1 late assembly protein; 50S ribosomal protein L15 3485714 rplO 439843003662 rplO Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L15 YP_002116363.1 3485280 R 439843 CDS YP_002116364.1 194736595 complement(3485718..3485897) 1 NC_011094.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3485897 rpmD 439843003663 rpmD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L30 YP_002116364.1 3485718 R 439843 CDS YP_002116365.1 194736871 complement(3485901..3486404) 1 NC_011094.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3486404 rpsE 439843003664 rpsE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S5 YP_002116365.1 3485901 R 439843 CDS YP_002116366.1 194736244 complement(3486419..3486772) 1 NC_011094.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3486772 rplR 439843003665 rplR Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L18 YP_002116366.1 3486419 R 439843 CDS YP_002116367.1 194735909 complement(3486782..3487315) 1 NC_011094.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3487315 rplF 439843003666 rplF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L6 YP_002116367.1 3486782 R 439843 CDS YP_002116368.1 194735239 complement(3487328..3487720) 1 NC_011094.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3487720 rpsH 439843003667 rpsH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S8 YP_002116368.1 3487328 R 439843 CDS YP_002116369.1 194734258 complement(3487754..3488059) 1 NC_011094.1 'located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif'; 30S ribosomal protein S14 3488059 rpsN 439843003668 rpsN Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S14 YP_002116369.1 3487754 R 439843 CDS YP_002116370.1 194734934 complement(3488074..3488613) 1 NC_011094.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3488613 rplE 439843003669 rplE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L5 YP_002116370.1 3488074 R 439843 CDS YP_002116371.1 194737014 complement(3488628..3488942) 1 NC_011094.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3488942 rplX 439843003670 rplX Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L24 YP_002116371.1 3488628 R 439843 CDS YP_002116372.1 194736930 complement(3488953..3489324) 1 NC_011094.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3489324 rplN 439843003671 rplN Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L14 YP_002116372.1 3488953 R 439843 CDS YP_002116373.1 194737428 complement(3489488..3489742) 1 NC_011094.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3489742 rpsQ 439843003672 rpsQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S17 YP_002116373.1 3489488 R 439843 CDS YP_002116374.1 194737912 complement(3489742..3489933) 1 NC_011094.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3489933 rpmC 439843003673 rpmC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L29 YP_002116374.1 3489742 R 439843 CDS YP_002116375.1 194734508 complement(3489933..3490343) 1 NC_011094.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3490343 rplP 439843003674 rplP Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L16 YP_002116375.1 3489933 R 439843 CDS YP_002116376.1 194737846 complement(3490356..3491057) 1 NC_011094.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3491057 rpsC 439843003675 rpsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S3 YP_002116376.1 3490356 R 439843 CDS YP_002116377.1 194736097 complement(3491075..3491407) 1 NC_011094.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3491407 rplV 439843003676 rplV Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L22 YP_002116377.1 3491075 R 439843 CDS YP_002116378.1 194734242 complement(3491422..3491700) 1 NC_011094.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3491700 rpsS 439843003677 rpsS Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S19 YP_002116378.1 3491422 R 439843 CDS YP_002116379.1 194735961 complement(3491717..3492538) 1 NC_011094.1 'one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation'; 50S ribosomal protein L2 3492538 rplB 439843003678 rplB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L2 YP_002116379.1 3491717 R 439843 CDS YP_002116380.1 194734065 complement(3492555..3492857) 1 NC_011094.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3492857 rplW 439843003679 rplW Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L23 YP_002116380.1 3492555 R 439843 CDS YP_002116381.1 194736512 complement(3492854..3493459) 1 NC_011094.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3493459 rplD 439843003680 rplD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L4 YP_002116381.1 3492854 R 439843 CDS YP_002116382.1 194737134 complement(3493470..3494099) 1 NC_011094.1 'binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin'; 50S ribosomal protein L3 3494099 rplC 439843003681 rplC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L3 YP_002116382.1 3493470 R 439843 CDS YP_002116383.1 194737772 complement(3494132..3494443) 1 NC_011094.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 3494443 rpsJ 439843003682 rpsJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S10 YP_002116383.1 3494132 R 439843 CDS YP_002116384.1 194737762 3494823..3495290 1 NC_011094.1 identified by match to protein family HMM PF01478; leader peptidase HopD 3495290 439843003683 SeSA_A3638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. leader peptidase HopD YP_002116384.1 3494823 D 439843 CDS YP_002116385.1 194738354 complement(3495287..3495763) 1 NC_011094.1 iron storage protein; bacterioferritin 3495763 bfr 439843003684 bfr Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacterioferritin YP_002116385.1 3495287 R 439843 CDS YP_002116386.1 194737282 complement(3495836..3496030) 1 NC_011094.1 identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin 3496030 bfd 439843003685 bfd Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacterioferritin-associated ferredoxin YP_002116386.1 3495836 R 439843 CDS YP_002116387.1 194735712 complement(3496215..3497399) 1 NC_011094.1 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 3497399 tuf2 439843003686 tuf2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor Tu YP_002116387.1 3496215 R 439843 CDS YP_002116388.1 194734071 complement(3497471..3499585) 1 NC_011094.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3499585 fusA 439843003687 fusA Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor G YP_002116388.1 3497471 R 439843 CDS YP_002116389.1 194735038 complement(3499682..3500152) 1 NC_011094.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3500152 rpsG 439843003688 rpsG Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S7 YP_002116389.1 3499682 R 439843 CDS YP_002116390.1 194734350 complement(3500248..3500622) 1 NC_011094.1 'interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance'; 30S ribosomal protein S12 3500622 rpsL 439843003689 rpsL Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S12 YP_002116390.1 3500248 R 439843 CDS YP_002116391.1 194737029 complement(3500748..3501035) 1 NC_011094.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3501035 dsrH 439843003690 dsrH Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfur transfer complex subunit TusB YP_002116391.1 3500748 R 439843 CDS YP_002116392.1 194736554 complement(3501043..3501399) 1 NC_011094.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3501399 tusC 439843003691 tusC Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfur relay protein TusC YP_002116392.1 3501043 R 439843 CDS YP_002116393.1 194735809 complement(3501399..3501785) 1 NC_011094.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3501785 tusD 439843003692 tusD Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfur transfer complex subunit TusD YP_002116393.1 3501399 R 439843 CDS YP_002116394.1 194735277 complement(3501785..3502507) 1 NC_011094.1 identified by match to protein family HMM PF08348; hypothetical protein 3502507 439843003693 SeSA_A3648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116394.1 3501785 R 439843 CDS YP_002116395.1 194734507 complement(3502783..3503601) 1 NC_011094.1 rotamase; FKBP-type peptidylprolyl isomerase 3503601 439843003694 SeSA_A3649 Salmonella enterica subsp. enterica serovar Schwarzengrund str. FKBP-type peptidylprolyl isomerase YP_002116395.1 3502783 R 439843 CDS YP_002116396.1 194736094 3503821..3504039 1 NC_011094.1 identified by match to protein family HMM PF04102; hypothetical protein 3504039 439843003695 SeSA_A3650 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116396.1 3503821 D 439843 CDS YP_002116397.1 194737586 complement(3504229..3504819) 1 NC_011094.1 rotamase; FKBP-type peptidylprolyl isomerase 3504819 slyD 439843003696 slyD Salmonella enterica subsp. enterica serovar Schwarzengrund str. FKBP-type peptidylprolyl isomerase YP_002116397.1 3504229 R 439843 CDS YP_002116398.1 194734793 complement(3504914..3505114) 1 NC_011094.1 identified by match to protein family HMM PF09526; match to protein family HMM TIGR02443; hypothetical protein 3505114 439843003697 SeSA_A3652 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116398.1 3504914 R 439843 CDS YP_002116399.1 194736568 complement(3505124..3506929) 1 NC_011094.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3506929 kefB 439843003698 kefB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-regulated potassium-efflux system protein KefB YP_002116399.1 3505124 R 439843 CDS YP_002116400.1 194737510 complement(3506929..3507480) 1 NC_011094.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3507480 kefG 439843003699 kefG Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione-regulated potassium-efflux system ancillary protein KefG YP_002116400.1 3506929 R 439843 CDS YP_002116401.1 194737834 3507746..3509653 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3509653 439843003700 SeSA_A3655 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002116401.1 3507746 D 439843 CDS YP_002116402.1 194738184 3509669..3509890 1 NC_011094.1 ABC transporter ATPase 3509890 439843003701 SeSA_A3656 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATPase YP_002116402.1 3509669 D 439843 CDS YP_002116403.1 194733903 complement(3509892..3510203) 1 NC_011094.1 identified by match to protein family HMM PF08803; hypothetical protein 3510203 439843003702 SeSA_A3657 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116403.1 3509892 R 439843 CDS YP_002116404.2 449306333 3510401..3511468 1 NC_011094.1 identified by match to protein family HMM PF00561; hydrolase 3511468 439843003703 SeSA_A3658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase YP_002116404.2 3510401 D 439843 CDS YP_002116405.1 194736227 3511465..3511683 1 NC_011094.1 identified by match to protein family HMM PF06794; hypothetical protein 3511683 439843003704 SeSA_A3659 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116405.1 3511465 D 439843 CDS YP_002116406.1 194736833 3511735..3512604 1 NC_011094.1 identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3512604 439843003705 SeSA_A3660 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribulokinase/uridine kinase family protein YP_002116406.1 3511735 D 439843 CDS YP_002116407.1 194737129 complement(3512700..3513104) 1 NC_011094.1 identified by match to protein family HMM PF02566; hypothetical protein 3513104 439843003706 SeSA_A3662 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116407.1 3512700 R 439843 CDS YP_002116408.1 194738036 3513070..3513252 1 NC_011094.1 identified by glimmer; hypothetical protein 3513252 439843003707 SeSA_A3661 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116408.1 3513070 D 439843 CDS YP_002116409.1 194735165 3513412..3514044 1 NC_011094.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3514044 crp 439843003708 crp Salmonella enterica subsp. enterica serovar Schwarzengrund str. cAMP-regulatory protein YP_002116409.1 3513412 D 439843 CDS YP_002116410.1 194736108 3514093..3516180 1 NC_011094.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; integral membrane protein, YccS/YhfK family protein 3516180 439843003709 SeSA_A3664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integral membrane protein, YccS/YhfK family protein YP_002116410.1 3514093 D 439843 CDS YP_002116411.1 194736869 complement(3516223..3517440) 1 NC_011094.1 'DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate'; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase 3517440 argD 439843003710 argD Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase YP_002116411.1 3516223 R 439843 CDS YP_002116412.1 194737562 complement(3517526..3518089) 1 NC_011094.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3518089 pabA 439843003711 pabA Salmonella enterica subsp. enterica serovar Schwarzengrund str. para-aminobenzoate synthase component II YP_002116412.1 3517526 R 439843 CDS YP_002116413.1 194734211 complement(3518121..3518723) 1 NC_011094.1 identified by match to protein family HMM PF02661; cell filamentation protein Fic 3518723 fic 439843003712 fic Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell filamentation protein Fic YP_002116413.1 3518121 R 439843 CDS YP_002116414.1 194734079 complement(3518713..3518880) 1 NC_011094.1 hypothetical protein 3518880 439843003713 SeSA_A3668 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116414.1 3518713 R 439843 CDS YP_002116415.1 194734984 complement(3518994..3519566) 1 NC_011094.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A 3519566 ppiA 439843003714 ppiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase A YP_002116415.1 3518994 R 439843 CDS YP_002116416.1 194735359 3519843..3521024 1 NC_011094.1 identified by match to protein family HMM PF07690; hypothetical protein 3521024 439843003715 SeSA_A3670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116416.1 3519843 D 439843 CDS YP_002116417.1 194735754 complement(3521215..3521391) 1 NC_011094.1 hypothetical protein 3521391 439843003716 SeSA_A3672 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116417.1 3521215 R 439843 CDS YP_002116418.1 194736602 3521344..3523887 1 NC_011094.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 3523887 nirB 439843003717 nirB Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrite reductase [NAD(P)H], large subunit YP_002116418.1 3521344 D 439843 CDS YP_002116419.1 194735404 3523884..3524210 1 NC_011094.1 'involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations'; nitrite reductase small subunit 3524210 nirD 439843003718 nirD Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrite reductase small subunit YP_002116419.1 3523884 D 439843 CDS YP_002116420.1 194734889 3524392..3525201 1 NC_011094.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3525201 nirC 439843003719 nirC Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrite transporter NirC YP_002116420.1 3524392 D 439843 CDS YP_002116421.1 194734918 3525213..3526586 1 NC_011094.1 'multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin'; siroheme synthase 3526586 cysG 439843003720 cysG Salmonella enterica subsp. enterica serovar Schwarzengrund str. siroheme synthase YP_002116421.1 3525213 D 439843 CDS YP_002116422.1 194734403 3526923..3532745 1 NC_011094.1 identified by match to protein family HMM PF03797; BigA 3532745 439843003721 SeSA_A3676 Salmonella enterica subsp. enterica serovar Schwarzengrund str. BigA YP_002116422.1 3526923 D 439843 CDS YP_002116423.1 194737430 3532939..3533109 1 NC_011094.1 outer membrane lipoprotein 3533109 439843003722 SeSA_A3677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002116423.1 3532939 D 439843 CDS YP_002116424.1 194736932 complement(3533254..3534258) 1 NC_011094.1 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase 3534258 trpS 439843003723 trpS Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophanyl-tRNA synthetase YP_002116424.1 3533254 R 439843 CDS YP_002116425.1 194735884 complement(3534251..3535009) 1 NC_011094.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3535009 gph 439843003724 gph Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycolate phosphatase YP_002116425.1 3534251 R 439843 CDS YP_002116426.1 194735372 complement(3535002..3535679) 1 NC_011094.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3535679 rpe 439843003725 rpe Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribulose-phosphate 3-epimerase YP_002116426.1 3535002 R 439843 CDS YP_002116427.1 194734864 complement(3535697..3536533) 1 NC_011094.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase 3536533 dam 439843003726 dam Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA adenine methylase YP_002116427.1 3535697 R 439843 CDS YP_002116428.1 194734397 complement(3536713..3537990) 1 NC_011094.1 identified by match to protein family HMM PF05036; hypothetical protein 3537990 439843003727 SeSA_A3682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116428.1 3536713 R 439843 CDS YP_002116429.1 194734398 complement(3538088..3539176) 1 NC_011094.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3539176 aroB 439843003728 aroB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-dehydroquinate synthase YP_002116429.1 3538088 R 439843 CDS YP_002116430.1 194738175 complement(3539233..3539754) 1 NC_011094.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3539754 aroK 439843003729 aroK Salmonella enterica subsp. enterica serovar Schwarzengrund str. shikimate kinase I YP_002116430.1 3539233 R 439843 CDS YP_002116431.1 194736855 complement(3541373..3541720) 1 NC_011094.1 hypothetical protein 3541720 439843003731 SeSA_A3686 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116431.1 3541373 R 439843 CDS YP_002116432.1 194736423 complement(3541764..3542237) 1 NC_011094.1 hypothetical protein 3542237 439843003732 SeSA_A3687 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116432.1 3541764 R 439843 CDS YP_002116433.1 194735643 complement(3542221..3542760) 1 NC_011094.1 identified by match to protein family HMM PF05137; PilN family protein 3542760 439843003733 SeSA_A3688 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PilN family protein YP_002116433.1 3542221 R 439843 CDS YP_008119805.1 513549423 complement(3542760..3543539) 1 NC_011094.1 hypothetical protein 3543539 439843003734 SeSA_A3689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119805.1 3542760 R 439843 CDS YP_002116434.1 194734007 3543660..3546212 1 NC_011094.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3546212 mrcA 439843003735 mrcA Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidoglycan synthetase YP_002116434.1 3543660 D 439843 CDS YP_002116435.1 194738378 complement(3546308..3546904) 1 NC_011094.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3546904 nudE 439843003736 nudE Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-ribose diphosphatase NudE YP_002116435.1 3546308 R 439843 CDS YP_002116436.1 194737602 3547194..3549326 1 NC_011094.1 identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3549326 439843003737 SeSA_A3692 Salmonella enterica subsp. enterica serovar Schwarzengrund str. intracellular growth attenuator protein IgaA YP_002116436.1 3547194 D 439843 CDS YP_002116437.1 194737403 3549391..3550059 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family protein 3550059 439843003738 SeSA_A3693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HAD hydrolase, IA family protein YP_002116437.1 3549391 D 439843 CDS YP_002116438.1 194736875 3550070..3550471 1 NC_011094.1 identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3550471 hslR 439843003739 hslR Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome-associated heat shock protein Hsp15 YP_002116438.1 3550070 D 439843 CDS YP_002116439.1 194736443 3550490..3551374 1 NC_011094.1 'becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers'; Hsp33-like chaperonin 3551374 hslO 439843003740 hslO Salmonella enterica subsp. enterica serovar Schwarzengrund str. Hsp33-like chaperonin YP_002116439.1 3550490 D 439843 CDS YP_002116440.1 194734618 complement(3551485..3553194) 1 NC_011094.1 hypothetical protein 3553194 439843003741 SeSA_A3696 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116440.1 3551485 R 439843 CDS YP_002116441.1 194734124 complement(3553386..3553520) 1 NC_011094.1 identified by glimmer; hypothetical protein 3553520 439843003742 SeSA_A3697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116441.1 3553386 R 439843 CDS YP_002116442.1 194737584 3553574..3555193 1 NC_011094.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3555193 pckA 439843003743 pckA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoenolpyruvate carboxykinase YP_002116442.1 3553574 D 439843 CDS YP_002116443.1 194734811 complement(3555268..3556611) 1 NC_011094.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3556611 envZ 439843003744 envZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. osmolarity sensor protein YP_002116443.1 3555268 R 439843 CDS YP_002116444.1 194736616 complement(3556617..3557336) 1 NC_011094.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3557336 ompR 439843003745 ompR Salmonella enterica subsp. enterica serovar Schwarzengrund str. osmolarity response regulator YP_002116444.1 3556617 R 439843 CDS YP_002116445.1 194738363 3557562..3558035 1 NC_011094.1 'necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus'; transcription elongation factor GreB 3558035 greB 439843003746 greB Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription elongation factor GreB YP_002116445.1 3557562 D 439843 CDS YP_002116446.1 194735081 3558134..3560464 1 NC_011094.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371; transcriptional accessory protein 3560464 439843003747 SeSA_A3702 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional accessory protein YP_002116446.1 3558134 D 439843 CDS YP_002116447.1 194736713 3560901..3561128 1 NC_011094.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 3561128 feoA 439843003748 feoA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrous iron transport protein A YP_002116447.1 3560901 D 439843 CDS YP_002116448.1 194735053 3561147..3563465 1 NC_011094.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3563465 feoB 439843003749 feoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrous iron transport protein B YP_002116448.1 3561147 D 439843 CDS YP_002116449.1 194734533 3563478..3563714 1 NC_011094.1 identified by match to protein family HMM PF09012; hypothetical protein 3563714 439843003750 SeSA_A3705 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116449.1 3563478 D 439843 CDS YP_002116450.1 194738181 3563766..3563879 1 NC_011094.1 identified by glimmer; hypothetical protein 3563879 439843003751 SeSA_A3706 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116450.1 3563766 D 439843 CDS YP_002116451.1 194737673 3563949..3564863 1 NC_011094.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3564863 439843003752 SeSA_A3707 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116451.1 3563949 D 439843 CDS YP_002116452.1 194737196 complement(3564899..3565621) 1 NC_011094.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3565621 439843003753 SeSA_A3708 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carboxylesterase BioH YP_002116452.1 3564899 R 439843 CDS YP_002116453.1 194736680 3565707..3566390 1 NC_011094.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3566390 gntX 439843003754 gntX Salmonella enterica subsp. enterica serovar Schwarzengrund str. gluconate periplasmic binding protein YP_002116453.1 3565707 D 439843 CDS YP_002116454.1 194735692 3566449..3567024 1 NC_011094.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3567024 gntY 439843003755 gntY Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA uptake protein YP_002116454.1 3566449 D 439843 CDS YP_002116455.1 194736066 3567401..3568717 1 NC_011094.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3568717 gntT 439843003756 gntT Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity gluconate transporter YP_002116455.1 3567401 D 439843 CDS YP_002116456.1 194734667 complement(3568836..3570914) 1 NC_011094.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3570914 malQ 439843003757 malQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-alpha-glucanotransferase YP_002116456.1 3568836 R 439843 CDS YP_002116457.1 194736418 complement(3570924..3573317) 1 NC_011094.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase 3573317 439843003758 SeSA_A3713 Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltodextrin phosphorylase YP_002116457.1 3570924 R 439843 CDS YP_002116458.1 194736796 3573911..3576616 1 NC_011094.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3576616 malT 439843003759 malT Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator MalT YP_002116458.1 3573911 D 439843 CDS YP_002116459.1 194737752 complement(3576683..3577441) 1 NC_011094.1 'represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism'; DNA-binding transcriptional repressor GlpR 3577441 439843003760 SeSA_A3715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor GlpR YP_002116459.1 3576683 R 439843 CDS YP_002116460.1 194738360 complement(3577535..3578365) 1 NC_011094.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3578365 439843003761 SeSA_A3716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. intramembrane serine protease GlpG YP_002116460.1 3577535 R 439843 CDS YP_002116461.1 194734272 complement(3578441..3578767) 1 NC_011094.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3578767 glpE 439843003762 glpE Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiosulfate sulfurtransferase YP_002116461.1 3578441 R 439843 CDS YP_002116462.1 194734839 3578966..3580474 1 NC_011094.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3580474 glpD 439843003763 glpD Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate dehydrogenase YP_002116462.1 3578966 D 439843 CDS YP_002116463.1 194734719 complement(3580521..3580919) 1 NC_011094.1 hypothetical protein 3580919 439843003764 SeSA_A3719 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116463.1 3580521 R 439843 CDS YP_002116464.1 194735106 complement(3580934..3581641) 1 NC_011094.1 hypothetical protein 3581641 439843003765 SeSA_A3720 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116464.1 3580934 R 439843 CDS YP_002116465.1 194735733 complement(3581651..3582025) 1 NC_011094.1 phosphate-binding protein 3582025 439843003766 SeSA_A3721 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate-binding protein YP_002116465.1 3581651 R 439843 CDS YP_002116466.1 194733977 3582077..3582196 1 NC_011094.1 identified by glimmer; hypothetical protein 3582196 439843003767 SeSA_A3722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116466.1 3582077 D 439843 CDS YP_002116467.1 194736721 complement(3582190..3582732) 1 NC_011094.1 identified by glimmer; hypothetical protein 3582732 439843003768 SeSA_A3723 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116467.1 3582190 R 439843 CDS YP_002116468.1 194734523 complement(3582832..3585279) 1 NC_011094.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 3585279 glgP 439843003769 glgP Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen phosphorylase YP_002116468.1 3582832 R 439843 CDS YP_002116469.1 194735310 complement(3585299..3586732) 1 NC_011094.1 'catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose'; glycogen synthase 3586732 glgA 439843003770 glgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen synthase YP_002116469.1 3585299 R 439843 CDS YP_002116470.1 194735772 complement(3586732..3588027) 1 NC_011094.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3588027 glgC 439843003771 glgC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-1-phosphate adenylyltransferase YP_002116470.1 3586732 R 439843 CDS YP_002116471.1 194736583 complement(3588042..3590018) 1 NC_011094.1 'catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen'; glycogen debranching protein 3590018 glgX 439843003772 glgX Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen debranching protein YP_002116471.1 3588042 R 439843 CDS YP_002116472.1 194737044 complement(3590015..3592201) 1 NC_011094.1 'catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain'; glycogen branching protein 3592201 glgB 439843003773 glgB Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycogen branching protein YP_002116472.1 3590015 R 439843 CDS YP_002116473.2 449306334 complement(3592579..3593685) 1 NC_011094.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3593685 asd 439843003774 asd Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate-semialdehyde dehydrogenase YP_002116473.2 3592579 R 439843 CDS YP_002116474.1 194738304 complement(3594109..3595449) 1 NC_011094.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter 3595449 gntU 439843003775 gntU Salmonella enterica subsp. enterica serovar Schwarzengrund str. low affinity gluconate transporter YP_002116474.1 3594109 R 439843 CDS YP_002116475.1 194734601 complement(3595446..3595940) 1 NC_011094.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3595940 gntK 439843003776 gntK Salmonella enterica subsp. enterica serovar Schwarzengrund str. gluconate kinase YP_002116475.1 3595446 R 439843 CDS YP_002116476.1 194735267 complement(3596118..3597113) 1 NC_011094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator GntR 3597113 gntR 439843003777 gntR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator GntR YP_002116476.1 3596118 R 439843 CDS YP_002116477.1 194737468 complement(3597243..3597938) 1 NC_011094.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein 3597938 439843003778 SeSA_A3733 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116477.1 3597243 R 439843 CDS YP_002116478.1 194737839 complement(3598062..3599099) 1 NC_011094.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase 3599099 439843003779 SeSA_A3734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dehydrogenase YP_002116478.1 3598062 R 439843 CDS YP_002116479.1 194738126 3599566..3600054 1 NC_011094.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3600054 439843003781 SeSA_A3736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase YhhY YP_002116479.1 3599566 D 439843 CDS YP_002116480.1 194734542 complement(3600135..3600251) 1 NC_011094.1 identified by glimmer; hypothetical protein 3600251 439843003782 SeSA_A3737 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116480.1 3600135 R 439843 CDS YP_002116481.1 194735486 3600319..3601533 1 NC_011094.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3601533 439843003783 SeSA_A3738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribokinase YP_002116481.1 3600319 D 439843 CDS YP_002116482.1 194735820 3601549..3602310 1 NC_011094.1 identified by match to protein family HMM PF07090; hypothetical protein 3602310 439843003784 SeSA_A3739 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116482.1 3601549 D 439843 CDS YP_002116483.1 194736332 3602364..3603335 1 NC_011094.1 hypothetical protein 3603335 439843003785 SeSA_A3740 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116483.1 3602364 D 439843 CDS YP_002116484.1 194737576 3603332..3604366 1 NC_011094.1 identified by match to protein family HMM PF02126; phophotriesterase 3604366 439843003786 SeSA_A3741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phophotriesterase YP_002116484.1 3603332 D 439843 CDS YP_002116485.1 194738047 complement(3604411..3606153) 1 NC_011094.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3606153 ggt 439843003787 ggt Salmonella enterica subsp. enterica serovar Schwarzengrund str. gamma-glutamyltranspeptidase YP_002116485.1 3604411 R 439843 CDS YP_002116486.1 194738263 3606279..3606695 1 NC_011094.1 hypothetical protein 3606695 439843003788 SeSA_A3743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116486.1 3606279 D 439843 CDS YP_002116487.1 194735739 complement(3606708..3607448) 1 NC_011094.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3607448 ugpQ 439843003789 ugpQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerophosphodiester phosphodiesterase YP_002116487.1 3606708 R 439843 CDS YP_002116488.1 194737035 complement(3607445..3608515) 1 NC_011094.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3608515 ugpC 439843003790 ugpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate transporter ATP-binding subunit YP_002116488.1 3607445 R 439843 CDS YP_002116489.1 194737780 complement(3608784..3609629) 1 NC_011094.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3609629 439843003791 SeSA_A3746 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate transporter membrane protein YP_002116489.1 3608784 R 439843 CDS YP_002116490.1 194738116 complement(3609626..3610513) 1 NC_011094.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3610513 ugpA 439843003792 ugpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate transporter permease YP_002116490.1 3609626 R 439843 CDS YP_002116491.1 194734216 complement(3610618..3611934) 1 NC_011094.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3611934 439843003793 SeSA_A3748 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate transporter periplasmic binding protein YP_002116491.1 3610618 R 439843 CDS YP_002116492.1 194735249 3612077..3612205 1 NC_011094.1 identified by glimmer; hypothetical protein 3612205 439843003794 SeSA_A3749 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116492.1 3612077 D 439843 CDS YP_002116493.1 194734459 complement(3612167..3612421) 1 NC_011094.1 hypothetical protein 3612421 439843003795 SeSA_A3750 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116493.1 3612167 R 439843 CDS YP_002116494.1 194736711 complement(3612609..3613322) 1 NC_011094.1 'with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit 3613322 livF 439843003796 livF Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine/isoleucine/valine transporter ATP-binding subunit YP_002116494.1 3612609 R 439843 CDS YP_002116495.1 194737117 complement(3613324..3614091) 1 NC_011094.1 'Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter ATP-binding subunit 3614091 livG 439843003797 livG Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine/isoleucine/valine transporter ATP-binding subunit YP_002116495.1 3613324 R 439843 CDS YP_002116496.1 194736808 complement(3614088..3615365) 1 NC_011094.1 'Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine'; leucine/isoleucine/valine transporter permease subunit 3615365 livM 439843003798 livM Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucine/isoleucine/valine transporter permease subunit YP_002116496.1 3614088 R 439843 CDS YP_002116497.1 194734280 complement(3615362..3616288) 1 NC_011094.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease LivH 3616288 livH 439843003799 livH Salmonella enterica subsp. enterica serovar Schwarzengrund str. branched-chain amino acid transporter permease LivH YP_002116497.1 3615362 R 439843 CDS YP_002116498.1 194736092 complement(3616348..3617457) 1 NC_011094.1 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK 3617457 livK 439843003800 livK Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK YP_002116498.1 3616348 R 439843 CDS YP_002116499.1 194735509 complement(3617575..3617691) 1 NC_011094.1 identified by glimmer; hypothetical protein 3617691 439843003801 SeSA_A3756 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116499.1 3617575 R 439843 CDS YP_002116500.1 194737728 3617879..3618262 1 NC_011094.1 identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 3618262 439843003802 SeSA_A3757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase, gnat family protein YP_002116500.1 3617879 D 439843 CDS YP_002116501.1 194736809 3618240..3618374 1 NC_011094.1 hypothetical protein 3618374 439843003803 SeSA_A3758 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116501.1 3618240 D 439843 CDS YP_002116502.1 194734111 complement(3618458..3619561) 1 NC_011094.1 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivJ 3619561 livJ 439843003804 livJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivJ YP_002116502.1 3618458 R 439843 CDS YP_002116503.1 194737973 complement(3619883..3620737) 1 NC_011094.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3620737 rpoH 439843003805 rpoH Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA polymerase factor sigma-32 YP_002116503.1 3619883 R 439843 CDS YP_002116504.1 194735788 complement(3620983..3622038) 1 NC_011094.1 'ABC transporter, membrane protein'; cell division protein FtsX 3622038 ftsX 439843003806 ftsX Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsX YP_002116504.1 3620983 R 439843 CDS YP_002116505.1 194735279 complement(3622031..3622699) 1 NC_011094.1 'ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions'; cell division protein FtsE 3622699 ftsE 439843003807 ftsE Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsE YP_002116505.1 3622031 R 439843 CDS YP_002116506.1 194736508 complement(3622702..3624177) 1 NC_011094.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3624177 ftsY 439843003808 ftsY Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsY YP_002116506.1 3622702 R 439843 CDS YP_002116507.1 194734826 3624276..3624899 1 NC_011094.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3624899 rsmD 439843003809 rsmD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S rRNA m(2)G966-methyltransferase YP_002116507.1 3624276 D 439843 CDS YP_002116508.1 194737556 3624889..3625158 1 NC_011094.1 identified by match to protein family HMM PF06611; hypothetical protein 3625158 439843003810 SeSA_A3765 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116508.1 3624889 D 439843 CDS YP_002116509.1 194738088 complement(3625180..3625551) 1 NC_011094.1 hypothetical protein 3625551 439843003811 SeSA_A3766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116509.1 3625180 R 439843 CDS YP_002116510.1 194735707 3625693..3626319 1 NC_011094.1 identified by match to protein family HMM PF07947; hypothetical protein 3626319 439843003812 SeSA_A3767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116510.1 3625693 D 439843 CDS YP_002116511.1 194736064 3626400..3628598 1 NC_011094.1 'P-type ATPase involved in the export of lead, cadmium, zinc and mercury'; zinc/cadmium/mercury/lead-transporting ATPase 3628598 zntA 439843003813 zntA Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc/cadmium/mercury/lead-transporting ATPase YP_002116511.1 3626400 D 439843 CDS YP_002116512.1 194734389 3628798..3630441 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3630441 439843003814 SeSA_A3769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein I YP_002116512.1 3628798 D 439843 CDS YP_002116513.1 194735426 complement(3630465..3630800) 1 NC_011094.1 identified by match to protein family HMM PF01206; hypothetical protein 3630800 439843003815 SeSA_A3770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116513.1 3630465 R 439843 CDS YP_002116514.1 194737663 3630805..3631545 1 NC_011094.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3631545 439843003816 SeSA_A3771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116514.1 3630805 D 439843 CDS YP_002116515.1 194738145 3631618..3632175 1 NC_011094.1 hypothetical protein 3632175 439843003817 SeSA_A3772 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116515.1 3631618 D 439843 CDS YP_002116516.1 194736660 complement(3632179..3633396) 1 NC_011094.1 identified by match to protein family HMM PF07690; major facilitator superfamily transporter 3633396 439843003818 SeSA_A3773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major facilitator superfamily transporter YP_002116516.1 3632179 R 439843 CDS YP_002116517.1 194738241 3633528..3634577 1 NC_011094.1 identified by match to protein family HMM PF01594; hypothetical protein 3634577 439843003819 SeSA_A3774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116517.1 3633528 D 439843 CDS YP_002116518.1 194737375 3634629..3635207 1 NC_011094.1 identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3635207 439843003820 SeSA_A3775 Salmonella enterica subsp. enterica serovar Schwarzengrund str. holo-(acyl carrier protein) synthase 2 YP_002116518.1 3634629 D 439843 CDS YP_002116519.1 194734904 3635299..3635700 1 NC_011094.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3635700 nikR 439843003821 nikR Salmonella enterica subsp. enterica serovar Schwarzengrund str. nickel responsive regulator YP_002116519.1 3635299 D 439843 CDS YP_002116520.1 194733962 complement(3635802..3636926) 1 NC_011094.1 identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein 3636926 439843003822 SeSA_A3777 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002116520.1 3635802 R 439843 CDS YP_002116521.1 194735760 complement(3636926..3639667) 1 NC_011094.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061; ABC transporter permease/ATP-binding protein 3639667 439843003823 SeSA_A3778 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease/ATP-binding protein YP_002116521.1 3636926 R 439843 CDS YP_002116522.1 194737089 complement(3639664..3640731) 1 NC_011094.1 identified by match to protein family HMM PF00529; auxiliary transport protein, membrane fusion protein (MFP) family protein 3640731 439843003824 SeSA_A3779 Salmonella enterica subsp. enterica serovar Schwarzengrund str. auxiliary transport protein, membrane fusion protein (MFP) family protein YP_002116522.1 3639664 R 439843 CDS YP_002116523.1 194736493 3640823..3640954 1 NC_011094.1 identified by glimmer; hypothetical protein 3640954 439843003825 SeSA_A3780 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116523.1 3640823 D 439843 CDS YP_002116524.1 194738325 complement(3641037..3642233) 1 NC_011094.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 3642233 439843003826 SeSA_A3781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116524.1 3641037 R 439843 CDS YP_002116525.1 194737829 3642464..3643960 1 NC_011094.1 identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3643960 439843003827 SeSA_A3782 Salmonella enterica subsp. enterica serovar Schwarzengrund str. low-affinity inorganic phosphate transporter 2 YP_002116525.1 3642464 D 439843 CDS YP_002116526.1 194734487 complement(3644102..3644383) 1 NC_011094.1 'ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress'; universal stress protein UspB 3644383 439843003828 SeSA_A3783 Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein UspB YP_002116526.1 3644102 R 439843 CDS YP_002116527.1 194737052 3644825..3645259 1 NC_011094.1 identified by match to protein family HMM PF00582; universal stress protein A 3645259 uspA 439843003829 uspA Salmonella enterica subsp. enterica serovar Schwarzengrund str. universal stress protein A YP_002116527.1 3644825 D 439843 CDS YP_002116528.1 194736456 3645584..3647056 1 NC_011094.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3647056 439843003830 SeSA_A3785 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transporter YhiP YP_002116528.1 3645584 D 439843 CDS YP_002116529.1 194738023 complement(3647148..3647906) 1 NC_011094.1 predicted SAM-dependent methyltransferase; methyltransferase 3647906 439843003831 SeSA_A3786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyltransferase YP_002116529.1 3647148 R 439843 CDS YP_002116530.1 194734493 complement(3647913..3649955) 1 NC_011094.1 identified by match to protein family HMM PF01432; oligopeptidase A 3649955 439843003832 SeSA_A3787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligopeptidase A YP_002116530.1 3647913 R 439843 CDS YP_002116531.1 194734957 complement(3650137..3651408) 1 NC_011094.1 identified by match to protein family HMM PF01569; phosphatase 3651408 439843003833 SeSA_A3788 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatase YP_002116531.1 3650137 R 439843 CDS YP_002116532.1 194735285 3651619..3652461 1 NC_011094.1 identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3652461 yhiR 439843003834 yhiR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA utilization protein YhiR YP_002116532.1 3651619 D 439843 CDS YP_002116533.1 194735777 complement(3652422..3652553) 1 NC_011094.1 identified by glimmer; hypothetical protein 3652553 439843003835 SeSA_A3790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116533.1 3652422 R 439843 CDS YP_002116534.1 194737090 3652566..3653918 1 NC_011094.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3653918 gor 439843003836 gor Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione reductase YP_002116534.1 3652566 D 439843 CDS YP_002116535.1 194736520 complement(3653965..3655008) 1 NC_011094.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 3655008 439843003837 SeSA_A3792 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-asparaginase YP_002116535.1 3653965 R 439843 CDS YP_002116536.1 194738372 complement(3655067..3656386) 1 NC_011094.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3656386 439843003838 SeSA_A3793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic C4-dicarboxylate transporter YP_002116536.1 3655067 R 439843 CDS YP_002116537.1 194737047 complement(3656440..3657285) 1 NC_011094.1 identified by match to protein family HMM PF00294; PfkB domain-containing protein 3657285 439843003839 SeSA_A3794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PfkB domain-containing protein YP_002116537.1 3656440 R 439843 CDS YP_002116538.1 194734834 complement(3657349..3658323) 1 NC_011094.1 identified by match to protein family HMM PF01380; sugar isomerase 3658323 439843003840 SeSA_A3795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar isomerase YP_002116538.1 3657349 R 439843 CDS YP_002116539.1 194734191 complement(3658502..3659221) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3659221 439843003841 SeSA_A3796 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GntR family transcriptional regulator YP_002116539.1 3658502 R 439843 CDS YP_002116540.1 194737569 3659547..3661196 1 NC_011094.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3661196 treF 439843003842 treF Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalase YP_002116540.1 3659547 D 439843 CDS YP_002116541.1 194734650 complement(3661209..3662798) 1 NC_011094.1 hypothetical protein 3662798 439843003843 SeSA_A3798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116541.1 3661209 R 439843 CDS YP_002116542.1 194738209 3663079..3663435 1 NC_011094.1 phage endolysin 3663435 439843003844 SeSA_A3799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage endolysin YP_002116542.1 3663079 D 439843 CDS YP_002116543.1 194737459 complement(3663441..3664043) 1 NC_011094.1 identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator 3664043 439843003845 SeSA_A3800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116543.1 3663441 R 439843 CDS YP_002116544.1 194737184 3664671..3665573 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3665573 439843003846 SeSA_A3801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR substrate binding domain-containing protein YP_002116544.1 3664671 D 439843 CDS YP_002116545.1 194736490 3665646..3666674 1 NC_011094.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3666674 439843003847 SeSA_A3802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease YP_002116545.1 3665646 D 439843 CDS YP_002116546.1 194735897 3667025..3668347 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter metabolite:H+ symporter (MHS) family protein 3668347 439843003848 SeSA_A3803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. MFS transporter metabolite:H+ symporter (MHS) family protein YP_002116546.1 3667025 D 439843 CDS YP_002116547.1 194735296 complement(3668387..3670447) 1 NC_011094.1 identified by match to protein family HMM PF05170; AsmA family protein 3670447 439843003849 SeSA_A3804 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AsmA family protein YP_002116547.1 3668387 R 439843 CDS YP_002116548.1 194738398 complement(3670557..3671324) 1 NC_011094.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3671324 439843003850 SeSA_A3805 Salmonella enterica subsp. enterica serovar Schwarzengrund str. EAL domain-containing protein YP_002116548.1 3670557 R 439843 CDS YP_008119806.1 513549424 3671553..3672482 1 NC_011094.1 2-dehydro-3-deoxygluconokinase 3672482 439843003851 SeSA_A3807 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-dehydro-3-deoxygluconokinase YP_008119806.1 3671553 D 439843 CDS YP_002116550.1 194734488 complement(3672536..3674023) 1 NC_011094.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein 3674023 439843003852 SeSA_A3808 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116550.1 3672536 R 439843 CDS YP_002116551.1 194735283 complement(3674243..3675529) 1 NC_011094.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3675529 dctA 439843003853 dctA Salmonella enterica subsp. enterica serovar Schwarzengrund str. C4-dicarboxylate transporter DctA YP_002116551.1 3674243 R 439843 CDS YP_002116552.1 194735819 complement(3675687..3677693) 1 NC_011094.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase 3677693 439843003854 SeSA_A3810 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphodiesterase YP_002116552.1 3675687 R 439843 CDS YP_002116553.1 194735245 complement(3677867..3681385) 1 NC_011094.1 'cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA'; cellulose synthase subunit BcsC 3681385 439843003855 SeSA_A3811 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose synthase subunit BcsC YP_002116553.1 3677867 R 439843 CDS YP_002116554.1 194735770 complement(3681391..3682500) 1 NC_011094.1 'catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans'; endo-1,4-D-glucanase 3682500 bcsZ 439843003856 bcsZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. endo-1,4-D-glucanase YP_002116554.1 3681391 R 439843 CDS YP_002116555.1 194736676 complement(3682504..3684804) 1 NC_011094.1 'binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)'; cellulose synthase regulator protein 3684804 439843003857 SeSA_A3813 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose synthase regulator protein YP_002116555.1 3682504 R 439843 CDS YP_002116556.1 194738156 complement(3684815..3687439) 1 NC_011094.1 'polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis'; cellulose synthase catalytic subunit 3687439 bcsA 439843003858 bcsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose synthase catalytic subunit YP_002116556.1 3684815 R 439843 CDS YP_002116557.1 194734050 complement(3687436..3688188) 1 NC_011094.1 identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371; cell division protein 3688188 yhjQ 439843003859 yhjQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein YP_002116557.1 3687436 R 439843 CDS YP_002116558.1 194735738 complement(3688189..3688392) 1 NC_011094.1 hypothetical protein 3688392 439843003860 SeSA_A3816 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116558.1 3688189 R 439843 CDS YP_002116559.1 194738367 3688649..3690208 1 NC_011094.1 identified by match to protein family HMM TIGR03369; cellulose biosynthesis protein BcsE 3690208 439843003861 SeSA_A3817 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose biosynthesis protein BcsE YP_002116559.1 3688649 D 439843 CDS YP_002116560.1 194737735 3690205..3690396 1 NC_011094.1 identified by match to protein family HMM TIGR03493; celllulose biosynthesis operon protein BcsF/YhjT 3690396 bcsF 439843003862 bcsF Salmonella enterica subsp. enterica serovar Schwarzengrund str. celllulose biosynthesis operon protein BcsF/YhjT YP_002116560.1 3690205 D 439843 CDS YP_002116561.1 194737071 3690393..3692072 1 NC_011094.1 identified by match to protein family HMM TIGR03368; cellulose synthase operon protein YhjU 3692072 yhjU 439843003863 yhjU Salmonella enterica subsp. enterica serovar Schwarzengrund str. cellulose synthase operon protein YhjU YP_002116561.1 3690393 D 439843 CDS YP_002116563.1 194735868 3692903..3694201 1 NC_011094.1 inner membrane transport protein YhaO 3694201 439843003864 SeSA_A3823 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YhaO YP_002116563.1 3692903 D 439843 CDS YP_002116564.1 194734590 complement(3694302..3695315) 1 NC_011094.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3695315 dppF 439843003865 dppF Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide transporter ATP-binding subunit YP_002116564.1 3694302 R 439843 CDS YP_002116565.1 194738350 complement(3695312..3696295) 1 NC_011094.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3696295 dppD 439843003866 dppD Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide transporter ATP-binding subunit YP_002116565.1 3695312 R 439843 CDS YP_002116566.1 194737717 complement(3696306..3697208) 1 NC_011094.1 identified by match to protein family HMM PF00528; dipeptide transporter 3697208 dppC 439843003867 dppC Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide transporter YP_002116566.1 3696306 R 439843 CDS YP_002116567.1 194736111 complement(3697218..3698237) 1 NC_011094.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3698237 dppB 439843003868 dppB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide transporter permease DppB YP_002116567.1 3697218 R 439843 CDS YP_002116568.1 194735610 complement(3698394..3699974) 1 NC_011094.1 identified by match to protein family HMM PF00496; dipeptide ABC transporter substrate-binding protein 3699974 dppA 439843003869 dppA Salmonella enterica subsp. enterica serovar Schwarzengrund str. dipeptide ABC transporter substrate-binding protein YP_002116568.1 3698394 R 439843 CDS YP_002116569.1 194734802 complement(3700560..3701885) 1 NC_011094.1 identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease 3701885 439843003870 SeSA_A3829 Salmonella enterica subsp. enterica serovar Schwarzengrund str. xanthine/uracil/vitamin C permease YP_002116569.1 3700560 R 439843 CDS YP_002116570.1 194734273 complement(3701943..3703067) 1 NC_011094.1 PQQ enzyme repeat 3703067 439843003871 SeSA_A3830 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PQQ enzyme repeat YP_002116570.1 3701943 R 439843 CDS YP_002116571.1 194737871 3703120..3703233 1 NC_011094.1 identified by glimmer; hypothetical protein 3703233 439843003872 SeSA_A3831 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116571.1 3703120 D 439843 CDS YP_002116572.1 194737554 3703217..3704224 1 NC_011094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator 3704224 439843003873 SeSA_A3832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator YP_002116572.1 3703217 D 439843 CDS YP_002116573.1 194736604 complement(3704550..3706241) 1 NC_011094.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3706241 439843003876 SeSA_A3835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoethanolamine transferase YP_002116573.1 3704550 R 439843 CDS YP_002116574.1 194736179 complement(3706472..3707176) 1 NC_011094.1 lipase 3707176 439843003877 SeSA_A3836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipase YP_002116574.1 3706472 R 439843 CDS YP_002116575.1 194736349 3707333..3707914 1 NC_011094.1 'constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine'; 3-methyladenine DNA glycosylase 3707914 439843003878 SeSA_A3837 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-methyladenine DNA glycosylase YP_002116575.1 3707333 D 439843 CDS YP_002116576.1 194737312 3707892..3708332 1 NC_011094.1 identified by match to protein family HMM PF00583; hypothetical protein 3708332 439843003879 SeSA_A3838 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116576.1 3707892 D 439843 CDS YP_002116577.1 194737074 complement(3708301..3710634) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase 3710634 439843003880 SeSA_A3839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. biotin sulfoxide reductase YP_002116577.1 3708301 R 439843 CDS YP_002116578.1 194738075 3710787..3711449 1 NC_011094.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3711449 439843003881 SeSA_A3840 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein YP_002116578.1 3710787 D 439843 CDS YP_002116579.1 194734963 3711678..3712652 1 NC_011094.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3712652 439843003882 SeSA_A3841 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-ketogluconate reductase YP_002116579.1 3711678 D 439843 CDS YP_002116580.1 194735354 complement(3712702..3713412) 1 NC_011094.1 hypothetical protein 3713412 439843003883 SeSA_A3842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116580.1 3712702 R 439843 CDS YP_002116581.1 194736235 complement(3713562..3713693) 1 NC_011094.1 identified by glimmer; hypothetical protein 3713693 439843003884 SeSA_A3843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116581.1 3713562 R 439843 CDS YP_002116582.1 194736603 3713851..3714141 1 NC_011094.1 transcriptional regulator 3714141 439843003885 SeSA_A3844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116582.1 3713851 D 439843 CDS YP_002116583.1 194736943 3714429..3714641 1 NC_011094.1 identified by match to protein family HMM PF00313; major cold shock protein 3714641 439843003886 SeSA_A3845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major cold shock protein YP_002116583.1 3714429 D 439843 CDS YP_002116584.1 194734703 3714814..3715353 1 NC_011094.1 hypothetical protein 3715353 439843003887 SeSA_A3846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116584.1 3714814 D 439843 CDS YP_002116585.1 194738343 complement(3716197..3716463) 1 NC_011094.1 identified by match to protein family HMM PF08681; hypothetical protein 3716463 439843003888 SeSA_A3847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116585.1 3716197 R 439843 CDS YP_002116586.1 194736534 complement(3716490..3716621) 1 NC_011094.1 identified by glimmer; hypothetical protein 3716621 439843003889 SeSA_A3848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116586.1 3716490 R 439843 CDS YP_002116587.1 194736702 complement(3717964..3720033) 1 NC_011094.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3720033 glyS 439843003890 glyS Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycyl-tRNA synthetase subunit beta YP_002116587.1 3717964 R 439843 CDS YP_002116588.1 194737193 complement(3720043..3720954) 1 NC_011094.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3720954 glyQ 439843003891 glyQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycyl-tRNA synthetase subunit alpha YP_002116588.1 3720043 R 439843 CDS YP_002116589.1 194735693 3720976..3721113 1 NC_011094.1 identified by glimmer; hypothetical protein 3721113 439843003892 SeSA_A3851 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116589.1 3720976 D 439843 CDS YP_002116590.1 194735201 complement(3721093..3721395) 1 NC_011094.1 hypothetical protein 3721395 439843003893 SeSA_A3852 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116590.1 3721093 R 439843 CDS YP_002116591.1 194737642 3721561..3722556 1 NC_011094.1 identified by match to protein family HMM PF01757; acyltransferase 3722556 439843003894 SeSA_A3853 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyltransferase YP_002116591.1 3721561 D 439843 CDS YP_002116592.1 194738153 complement(3722579..3722932) 1 NC_011094.1 identified by match to protein family HMM PF05360; hypothetical protein 3722932 439843003895 SeSA_A3854 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116592.1 3722579 R 439843 CDS YP_002116593.1 194734530 complement(3724661..3725983) 1 NC_011094.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3725983 xylA 439843003897 xylA Salmonella enterica subsp. enterica serovar Schwarzengrund str. xylose isomerase YP_002116593.1 3724661 R 439843 CDS YP_002116594.1 194733913 complement(3726065..3726241) 1 NC_011094.1 identified by glimmer; hypothetical protein 3726241 439843003898 SeSA_A3858 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116594.1 3726065 R 439843 CDS YP_002116595.1 194736118 3726346..3727524 1 NC_011094.1 identified by match to protein family HMM PF00165; xylose operon regulatory protein 3727524 439843003899 SeSA_A3859 Salmonella enterica subsp. enterica serovar Schwarzengrund str. xylose operon regulatory protein YP_002116595.1 3726346 D 439843 CDS YP_002116596.1 194737228 complement(3727585..3728508) 1 NC_011094.1 identified by match to protein family HMM PF01832; hypothetical protein 3728508 bax 439843003900 bax Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116596.1 3727585 R 439843 CDS YP_002116597.1 194736698 complement(3728539..3728673) 1 NC_011094.1 identified by glimmer; hypothetical protein 3728673 439843003901 SeSA_A3861 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116597.1 3728539 R 439843 CDS YP_002116598.1 194738155 3728725..3730752 1 NC_011094.1 'periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds'; periplasmic alpha-amylase 3730752 malS 439843003902 malS Salmonella enterica subsp. enterica serovar Schwarzengrund str. periplasmic alpha-amylase YP_002116598.1 3728725 D 439843 CDS YP_002116599.1 194738090 3730926..3732176 1 NC_011094.1 'transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis'; valine--pyruvate transaminase 3732176 avtA 439843003903 avtA Salmonella enterica subsp. enterica serovar Schwarzengrund str. valine--pyruvate transaminase YP_002116599.1 3730926 D 439843 CDS YP_002116600.1 194738110 complement(3732213..3732686) 1 NC_011094.1 identified by match to protein family HMM PF00037; protein AegA 3732686 439843003904 SeSA_A3864 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein AegA YP_002116600.1 3732213 R 439843 CDS YP_002116601.1 194737487 complement(3732803..3733603) 1 NC_011094.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; HTH-type transcriptional regulator 3733603 439843003905 SeSA_A3865 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator YP_002116601.1 3732803 R 439843 CDS YP_002116602.1 194738073 3733833..3734831 1 NC_011094.1 'NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate'; 2,3-diketo-L-gulonate reductase 3734831 439843003906 SeSA_A3866 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,3-diketo-L-gulonate reductase YP_002116602.1 3733833 D 439843 CDS YP_002116603.1 194736199 3734843..3735307 1 NC_011094.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3735307 439843003907 SeSA_A3867 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116603.1 3734843 D 439843 CDS YP_002116604.1 194735511 3735331..3736263 1 NC_011094.1 hypothetical protein 3736263 439843003908 SeSA_A3868 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116604.1 3735331 D 439843 CDS YP_002116605.1 194735166 3736402..3736875 1 NC_011094.1 'membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO'; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3736875 439843003909 SeSA_A3869 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM YP_002116605.1 3736402 D 439843 CDS YP_002116606.1 194736147 3736878..3738155 1 NC_011094.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease yian 3738155 439843003910 SeSA_A3870 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2,3-diketo-l-gulonate trap transporter large permease yian YP_002116606.1 3736878 D 439843 CDS YP_002116607.1 194734339 3738167..3739153 1 NC_011094.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap transporter solute receptor, dctp family protein 3739153 439843003911 SeSA_A3871 Salmonella enterica subsp. enterica serovar Schwarzengrund str. trap transporter solute receptor, dctp family protein YP_002116607.1 3738167 D 439843 CDS YP_002116608.1 194734656 3739157..3740653 1 NC_011094.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3740653 439843003912 SeSA_A3872 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-xylulose/3-keto-L-gulonate kinase YP_002116608.1 3739157 D 439843 CDS YP_002116609.1 194737692 3740650..3741300 1 NC_011094.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3741300 sgbH 439843003913 sgbH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-keto-L-gulonate-6-phosphate decarboxylase YP_002116609.1 3740650 D 439843 CDS YP_002116610.1 194737478 3741305..3742165 1 NC_011094.1 'L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate'; L-xylulose 5-phosphate 3-epimerase 3742165 439843003914 SeSA_A3874 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-xylulose 5-phosphate 3-epimerase YP_002116610.1 3741305 D 439843 CDS YP_002116611.1 194738071 3742159..3742854 1 NC_011094.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3742854 sgbE 439843003915 sgbE Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-ribulose-5-phosphate 4-epimerase YP_002116611.1 3742159 D 439843 CDS YP_002116612.1 194737463 complement(3743003..3743818) 1 NC_011094.1 identified by match to protein family HMM PF00165; transcriptional regulator 3743818 439843003916 SeSA_A3876 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116612.1 3743003 R 439843 CDS YP_002116613.1 194737873 3744082..3746037 1 NC_011094.1 identified by match to protein family HMM PF07944; hypothetical protein 3746037 439843003917 SeSA_A3877 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116613.1 3744082 D 439843 CDS YP_002116614.1 194738264 3746042..3746227 1 NC_011094.1 hypothetical protein 3746227 439843003918 SeSA_A3878 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116614.1 3746042 D 439843 CDS YP_002116615.1 194736923 complement(3746323..3747861) 1 NC_011094.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 3747861 aldB 439843003919 aldB Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldehyde dehydrogenase YP_002116615.1 3746323 R 439843 CDS YP_002116616.1 194737147 3748030..3748911 1 NC_011094.1 identified by match to protein family HMM PF00480; transcriptional regulator 3748911 439843003920 SeSA_A3880 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116616.1 3748030 D 439843 CDS YP_002116617.1 194735387 complement(3748983..3750134) 1 NC_011094.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 3750134 439843003921 SeSA_A3881 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alcohol dehydrogenase YP_002116617.1 3748983 R 439843 CDS YP_002116618.1 194735632 complement(3750320..3752170) 1 NC_011094.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor 3752170 selB 439843003922 selB Salmonella enterica subsp. enterica serovar Schwarzengrund str. selenocysteinyl-tRNA-specific translation factor YP_002116618.1 3750320 R 439843 CDS YP_002116619.1 194733974 complement(3752167..3753558) 1 NC_011094.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3753558 selA 439843003923 selA Salmonella enterica subsp. enterica serovar Schwarzengrund str. selenocysteine synthase YP_002116619.1 3752167 R 439843 CDS YP_002116620.1 194734715 complement(3753657..3754352) 1 NC_011094.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 3754352 439843003924 SeSA_A3884 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase YP_002116620.1 3753657 R 439843 CDS YP_002116621.1 194737376 3754741..3756657 1 NC_011094.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit IICBA 3756657 439843003925 SeSA_A3885 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannitol-specific transporter subunit IICBA YP_002116621.1 3754741 D 439843 CDS YP_002116622.1 194735630 3756878..3758026 1 NC_011094.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3758026 mtlD 439843003926 mtlD Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannitol-1-phosphate 5-dehydrogenase YP_002116622.1 3756878 D 439843 CDS YP_002116623.1 194735117 3758023..3758613 1 NC_011094.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3758613 mtlR 439843003927 mtlR Salmonella enterica subsp. enterica serovar Schwarzengrund str. mannitol repressor protein YP_002116623.1 3758023 D 439843 CDS YP_002116624.1 194736627 complement(3758623..3758832) 1 NC_011094.1 hypothetical protein 3758832 439843003928 SeSA_A3888 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116624.1 3758623 R 439843 CDS YP_002116625.1 194736157 3759123..3759485 1 NC_011094.1 hypothetical protein 3759485 439843003929 SeSA_A3889 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116625.1 3759123 D 439843 CDS YP_002116626.1 194737603 3759533..3759727 1 NC_011094.1 identified by glimmer; hypothetical protein 3759727 439843003930 SeSA_A3890 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116626.1 3759533 D 439843 CDS YP_002116627.1 194736976 3759972..3760655 1 NC_011094.1 hypothetical protein 3760655 439843003931 SeSA_A3891 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116627.1 3759972 D 439843 CDS YP_002116628.1 194734122 3760699..3765039 1 NC_011094.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3765039 439843003932 SeSA_A3892 Salmonella enterica subsp. enterica serovar Schwarzengrund str. autotransporter YP_002116628.1 3760699 D 439843 CDS YP_002116629.1 194737852 3765338..3766993 1 NC_011094.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3766993 lldP 439843003933 lldP Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-lactate permease YP_002116629.1 3765338 D 439843 CDS YP_002116630.1 194735151 3766990..3767766 1 NC_011094.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3767766 439843003934 SeSA_A3894 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor LldR YP_002116630.1 3766990 D 439843 CDS YP_002116631.1 194734323 3767763..3768953 1 NC_011094.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3768953 lldD 439843003935 lldD Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-lactate dehydrogenase YP_002116631.1 3767763 D 439843 CDS YP_002116632.1 194734332 3769018..3769491 1 NC_011094.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3769491 439843003936 SeSA_A3896 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA/rRNA methyltransferase YibK YP_002116632.1 3769018 D 439843 CDS YP_002116633.1 194738318 3769488..3769604 1 NC_011094.1 identified by glimmer; hypothetical protein 3769604 439843003937 SeSA_A3897 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116633.1 3769488 D 439843 CDS YP_002116634.1 194737807 complement(3769674..3770495) 1 NC_011094.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3770495 cysE 439843003938 cysE Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine acetyltransferase YP_002116634.1 3769674 R 439843 CDS YP_002116635.1 194737108 complement(3770573..3771592) 1 NC_011094.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3771592 gpsA 439843003939 gpsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002116635.1 3770573 R 439843 CDS YP_002116636.1 194735826 complement(3771592..3772059) 1 NC_011094.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3772059 secB 439843003940 secB Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecB YP_002116636.1 3771592 R 439843 CDS YP_002116637.1 194735256 complement(3772103..3772354) 1 NC_011094.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 3772354 grxC 439843003941 grxC Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutaredoxin 3 YP_002116637.1 3772103 R 439843 CDS YP_002116638.1 194734466 complement(3772440..3772871) 1 NC_011094.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 3772871 439843003942 SeSA_A3902 Salmonella enterica subsp. enterica serovar Schwarzengrund str. rhodanese domain-containing protein YP_002116638.1 3772440 R 439843 CDS YP_002116639.1 194733987 3773119..3774663 1 NC_011094.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3774663 gpmI 439843003943 gpmI Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglyceromutase YP_002116639.1 3773119 D 439843 CDS YP_002116640.1 194738321 3774673..3775956 1 NC_011094.1 identified by match to protein family HMM PF01551; hypothetical protein 3775956 439843003944 SeSA_A3904 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116640.1 3774673 D 439843 CDS YP_002116641.1 194735049 3775960..3776922 1 NC_011094.1 identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3776922 439843003945 SeSA_A3905 Salmonella enterica subsp. enterica serovar Schwarzengrund str. divergent polysaccharide deacetylase YP_002116641.1 3775960 D 439843 CDS YP_002116642.1 194737654 complement(3776909..3777943) 1 NC_011094.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 3777943 439843003946 SeSA_A3906 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycosyl transferase family protein YP_002116642.1 3776909 R 439843 CDS YP_002116643.1 194735859 complement(3778237..3779262) 1 NC_011094.1 'converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism'; L-threonine 3-dehydrogenase 3779262 tdh 439843003947 tdh Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-threonine 3-dehydrogenase YP_002116643.1 3778237 R 439843 CDS YP_002116644.1 194734301 complement(3779272..3780468) 1 NC_011094.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 3780468 kbl 439843003948 kbl Salmonella enterica subsp. enterica serovar Schwarzengrund str. 2-amino-3-ketobutyrate CoA ligase YP_002116644.1 3779272 R 439843 CDS YP_002116645.1 194734790 3780671..3781603 1 NC_011094.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3781603 rfaD 439843003949 rfaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-L-glycero-D-manno-heptose-6-epimerase YP_002116645.1 3780671 D 439843 CDS YP_002116646.1 194737811 3781606..3782652 1 NC_011094.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3782652 rfaF 439843003950 rfaF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-heptose--LPS heptosyltransferase YP_002116646.1 3781606 D 439843 CDS YP_002116647.1 194737435 3782652..3783605 1 NC_011094.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose--LPS heptosyltransferase 3783605 rfaC 439843003951 rfaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-heptose--LPS heptosyltransferase YP_002116647.1 3782652 D 439843 CDS YP_002116648.1 194737936 3783645..3784859 1 NC_011094.1 identified by match to protein family HMM PF04932; O-antigen ligase 3784859 439843003952 SeSA_A3912 Salmonella enterica subsp. enterica serovar Schwarzengrund str. O-antigen ligase YP_002116648.1 3783645 D 439843 CDS YP_002116649.1 194736194 complement(3784916..3786061) 1 NC_011094.1 identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3786061 439843003953 SeSA_A3913 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_002116649.1 3784916 R 439843 CDS YP_002116650.1 194736931 complement(3786161..3786970) 1 NC_011094.1 lipopolysaccharide core biosynthesis protein 3786970 439843003954 SeSA_A3914 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide core biosynthesis protein YP_002116650.1 3786161 R 439843 CDS YP_002116651.1 194735458 complement(3787120..3787818) 1 NC_011094.1 identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein 3787818 439843003955 SeSA_A3915 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide core biosynthesis protein YP_002116651.1 3787120 R 439843 CDS YP_002116652.1 194734939 complement(3787841..3788854) 1 NC_011094.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase 3788854 439843003956 SeSA_A3916 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide 1,2-glucosyltransferase YP_002116652.1 3787841 R 439843 CDS YP_002116653.1 194737566 complement(3788872..3789885) 1 NC_011094.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase 3789885 439843003957 SeSA_A3917 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide 1,3-galactosyltransferase YP_002116653.1 3788872 R 439843 CDS YP_002116654.1 194737924 complement(3789891..3790982) 1 NC_011094.1 identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3790982 439843003958 SeSA_A3918 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_002116654.1 3789891 R 439843 CDS YP_002116655.1 194738265 complement(3791056..3791979) 1 NC_011094.1 identified by match to protein family HMM PF07922; UDP-glucose:glucosyl LPS a1,2-glucosyltransferase 3791979 439843003959 SeSA_A3919 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-glucose:glucosyl LPS a1,2-glucosyltransferase YP_002116655.1 3791056 R 439843 CDS YP_002116656.1 194736857 complement(3792034..3792831) 1 NC_011094.1 identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein RfaP 3792831 439843003960 SeSA_A3920 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide core biosynthesis protein RfaP YP_002116656.1 3792034 R 439843 CDS YP_002116657.1 194737226 complement(3792824..3793948) 1 NC_011094.1 identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG 3793948 439843003961 SeSA_A3921 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide core biosynthesis protein RfaG YP_002116657.1 3792824 R 439843 CDS YP_002116658.1 194735337 complement(3793945..3795015) 1 NC_011094.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein 3795015 439843003962 SeSA_A3922 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide core biosynthesis protein YP_002116658.1 3793945 R 439843 CDS YP_002116659.1 194736070 3795424..3796701 1 NC_011094.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3796701 waaA 439843003963 waaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-deoxy-D-manno-octulosonic-acid transferase YP_002116659.1 3795424 D 439843 CDS YP_002116660.1 194733976 3796710..3797189 1 NC_011094.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3797189 coaD 439843003964 coaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphopantetheine adenylyltransferase YP_002116660.1 3796710 D 439843 CDS YP_002116661.1 194734471 complement(3797217..3798026) 1 NC_011094.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3798026 mutM 439843003965 mutM Salmonella enterica subsp. enterica serovar Schwarzengrund str. formamidopyrimidine-DNA glycosylase YP_002116661.1 3797217 R 439843 CDS YP_002116662.1 194736564 complement(3798124..3798291) 1 NC_011094.1 'in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif'; 50S ribosomal protein L33 3798291 rpmG 439843003966 rpmG Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L33 YP_002116662.1 3798124 R 439843 CDS YP_002116663.1 194736234 complement(3798312..3798548) 1 NC_011094.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3798548 rpmB 439843003967 rpmB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L28 YP_002116663.1 3798312 R 439843 CDS YP_002116664.1 194738096 complement(3798766..3799431) 1 NC_011094.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3799431 radC 439843003968 radC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA repair protein RadC YP_002116664.1 3798766 R 439843 CDS YP_008119807.1 513549425 3799604..3800827 1 NC_011094.1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3800827 coaBC 439843003969 coaBC Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_008119807.1 3799604 D 439843 CDS YP_002116665.1 194734537 3800805..3801263 1 NC_011094.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3801263 dut 439843003970 dut Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002116665.1 3800805 D 439843 CDS YP_002116666.1 194734180 3801371..3801967 1 NC_011094.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3801967 slmA 439843003971 slmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoid occlusion protein YP_002116666.1 3801371 D 439843 CDS YP_002116667.1 194736098 complement(3802045..3802686) 1 NC_011094.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3802686 pyrE 439843003972 pyrE Salmonella enterica subsp. enterica serovar Schwarzengrund str. orotate phosphoribosyltransferase YP_002116667.1 3802045 R 439843 CDS YP_002116668.1 194735193 complement(3802765..3803481) 1 NC_011094.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3803481 rph 439843003973 rph Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease PH YP_002116668.1 3802765 R 439843 CDS YP_002116669.1 194737026 3803607..3804470 1 NC_011094.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3804470 439843003974 SeSA_A3934 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116669.1 3803607 D 439843 CDS YP_002116670.1 194736776 3804662..3805924 1 NC_011094.1 identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family protein 3805924 439843003975 SeSA_A3935 Salmonella enterica subsp. enterica serovar Schwarzengrund str. site-specific recombinase, phage integrase family protein YP_002116670.1 3804662 D 439843 CDS YP_002116671.1 194735177 3806368..3806526 1 NC_011094.1 hypothetical protein 3806526 439843003976 SeSA_A3936 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116671.1 3806368 D 439843 CDS YP_002116672.1 194736204 3806527..3807849 1 NC_011094.1 hypothetical protein 3807849 439843003977 SeSA_A3937 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116672.1 3806527 D 439843 CDS YP_002116673.1 194738388 complement(3807903..3808424) 1 NC_011094.1 identified by glimmer; hypothetical protein 3808424 439843003978 SeSA_A3938 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116673.1 3807903 R 439843 CDS YP_002116674.1 194737742 complement(3809083..3809916) 1 NC_011094.1 hypothetical protein 3809916 439843003979 SeSA_A3939 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116674.1 3809083 R 439843 CDS YP_002116675.1 194734857 complement(3811188..3811790) 1 NC_011094.1 hypothetical protein 3811790 439843003980 SeSA_A3940 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116675.1 3811188 R 439843 CDS YP_002116676.1 194734171 3811901..3812026 1 NC_011094.1 identified by glimmer; hypothetical protein 3812026 439843003981 SeSA_A3941 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116676.1 3811901 D 439843 CDS YP_002116677.1 194735379 3812412..3813491 1 NC_011094.1 hypothetical protein 3813491 439843003982 SeSA_A3942 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116677.1 3812412 D 439843 CDS YP_002116678.1 194735115 complement(3813596..3814498) 1 NC_011094.1 identified by match to protein family HMM PF00126; transcriptional regulator, LysR family protein 3814498 439843003983 SeSA_A3943 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, LysR family protein YP_002116678.1 3813596 R 439843 CDS YP_002116679.1 194736864 3814572..3815453 1 NC_011094.1 identified by match to protein family HMM PF00753; beta-lactamase 3815453 439843003984 SeSA_A3944 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-lactamase YP_002116679.1 3814572 D 439843 CDS YP_002116680.1 194738366 3815458..3815580 1 NC_011094.1 identified by glimmer; hypothetical protein 3815580 439843003985 SeSA_A3945 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116680.1 3815458 D 439843 CDS YP_002116681.1 194734449 3815704..3816321 1 NC_011094.1 identified by match to protein family HMM PF03458; hypothetical protein 3816321 439843003986 SeSA_A3946 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116681.1 3815704 D 439843 CDS YP_002116682.1 194734322 complement(3816318..3818003) 1 NC_011094.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3818003 ligB 439843003987 ligB Salmonella enterica subsp. enterica serovar Schwarzengrund str. NAD-dependent DNA ligase LigB YP_002116682.1 3816318 R 439843 CDS YP_002116683.1 194734961 3818260..3818883 1 NC_011094.1 'Essential for recycling GMP and indirectly, cGMP'; guanylate kinase 3818883 gmk 439843003988 gmk Salmonella enterica subsp. enterica serovar Schwarzengrund str. guanylate kinase YP_002116683.1 3818260 D 439843 CDS YP_002116684.1 194737850 3818938..3819213 1 NC_011094.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3819213 rpoZ 439843003989 rpoZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-directed RNA polymerase subunit omega YP_002116684.1 3818938 D 439843 CDS YP_002116685.1 194736380 3819232..3821343 1 NC_011094.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3821343 439843003990 SeSA_A3950 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002116685.1 3819232 D 439843 CDS YP_002116686.1 194735347 3821348..3822037 1 NC_011094.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3822037 trmH 439843003991 trmH Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA guanosine-2'-O-methyltransferase YP_002116686.1 3821348 D 439843 CDS YP_002116687.1 194735749 3822043..3824124 1 NC_011094.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3824124 recG 439843003992 recG Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent DNA helicase RecG YP_002116687.1 3822043 D 439843 CDS YP_002116688.1 194733970 complement(3824160..3825365) 1 NC_011094.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 3825365 gltS 439843003993 gltS Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium/glutamate symporter YP_002116688.1 3824160 R 439843 CDS YP_002116689.1 194734456 3825593..3826984 1 NC_011094.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3826984 439843003994 SeSA_A3954 Salmonella enterica subsp. enterica serovar Schwarzengrund str. uracil-xanthine permease YP_002116689.1 3825593 D 439843 CDS YP_002116690.1 194737842 3827105..3828814 1 NC_011094.1 identified by match to protein family HMM PF05170; AsmA family protein 3828814 439843003995 SeSA_A3955 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AsmA family protein YP_002116690.1 3827105 D 439843 CDS YP_002116691.1 194737559 complement(3828917..3831235) 1 NC_011094.1 'catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides'; alpha-xylosidase 3831235 439843003996 SeSA_A3956 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-xylosidase YP_002116691.1 3828917 R 439843 CDS YP_002116692.1 194736843 complement(3831247..3832629) 1 NC_011094.1 may be involved in the transport of galactosides-pentoses-hexuronides; transporter 3832629 439843003997 SeSA_A3957 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002116692.1 3831247 R 439843 CDS YP_002116693.1 194736377 3833276..3833416 1 NC_011094.1 hypothetical protein 3833416 439843003999 SeSA_A3959 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116693.1 3833276 D 439843 CDS YP_002116694.1 194737956 3833765..3833896 1 NC_011094.1 hypothetical protein 3833896 439843004000 SeSA_A3960 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116694.1 3833765 D 439843 CDS YP_002116695.1 194737326 3834632..3835249 1 NC_011094.1 RmbA 3835249 439843004001 SeSA_A3961 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RmbA YP_002116695.1 3834632 D 439843 CDS YP_002116696.1 194734010 3835324..3838191 1 NC_011094.1 identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter barrel domain 3838191 439843004002 SeSA_A3962 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane autotransporter barrel domain YP_002116696.1 3835324 D 439843 CDS YP_002116697.1 194734649 complement(3838286..3838768) 1 NC_011094.1 hypothetical protein 3838768 439843004003 SeSA_A3963 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116697.1 3838286 R 439843 CDS YP_002116698.1 194737607 complement(3838761..3839525) 1 NC_011094.1 identified by match to protein family HMM PF00486; transcriptional regulatory protein C 3839525 439843004004 SeSA_A3964 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein C YP_002116698.1 3838761 R 439843 CDS YP_002116699.1 194738225 3840223..3840348 1 NC_011094.1 identified by glimmer; hypothetical protein 3840348 439843004005 SeSA_A3965 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116699.1 3840223 D 439843 CDS YP_002116700.1 194738240 3840403..3841083 1 NC_011094.1 identified by match to protein family HMM PF00857; SlsA 3841083 439843004006 SeSA_A3966 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SlsA YP_002116700.1 3840403 D 439843 CDS YP_002116701.1 194738245 complement(3841251..3841778) 1 NC_011094.1 hypothetical protein 3841778 439843004007 SeSA_A3967 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116701.1 3841251 R 439843 CDS YP_002116702.1 194737483 3841917..3842048 1 NC_011094.1 identified by glimmer; hypothetical protein 3842048 439843004008 SeSA_A3968 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116702.1 3841917 D 439843 CDS YP_002116703.1 194737976 complement(3842045..3844771) 1 NC_011094.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 3844771 mgtA 439843004009 mgtA Salmonella enterica subsp. enterica serovar Schwarzengrund str. magnesium-translocating P-type ATPase YP_002116703.1 3842045 R 439843 CDS YP_002116704.1 194734880 3844870..3844983 1 NC_011094.1 identified by glimmer; hypothetical protein 3844983 439843004010 SeSA_A3970 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116704.1 3844870 D 439843 CDS YP_002116705.1 194734001 complement(3844990..3845667) 1 NC_011094.1 identified by match to protein family HMM PF02308; protein MgtC 3845667 439843004011 SeSA_A3971 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein MgtC YP_002116705.1 3844990 R 439843 CDS YP_002116706.1 194737119 3846146..3847093 1 NC_011094.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 3847093 439843004012 SeSA_A3972 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carboxylate/amino acid/amine transporter YP_002116706.1 3846146 D 439843 CDS YP_002116707.1 194736905 complement(3847136..3848065) 1 NC_011094.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3848065 439843004013 SeSA_A3973 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116707.1 3847136 R 439843 CDS YP_002116708.1 194738298 complement(3848301..3849044) 1 NC_011094.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 3849044 439843004014 SeSA_A3974 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116708.1 3848301 R 439843 CDS YP_002116709.1 194737796 complement(3849031..3850140) 1 NC_011094.1 identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent enzyme 3850140 439843004015 SeSA_A3975 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyridoxal phosphate-dependent enzyme YP_002116709.1 3849031 R 439843 CDS YP_002116710.1 194737387 complement(3850144..3851004) 1 NC_011094.1 identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID 3851004 439843004016 SeSA_A3976 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system mannose/fructose/sorbose family transporter subunit IID YP_002116710.1 3850144 R 439843 CDS YP_002116711.1 194735642 complement(3851001..3851750) 1 NC_011094.1 identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC 3851750 439843004017 SeSA_A3977 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system sorbose-specific transporter subunit IIC YP_002116711.1 3851001 R 439843 CDS YP_002116712.1 194736727 complement(3851896..3852381) 1 NC_011094.1 identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB 3852381 439843004018 SeSA_A3978 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system sorbose subfamily transporter subunit IIB YP_002116712.1 3851896 R 439843 CDS YP_002116713.1 194737215 complement(3852392..3852817) 1 NC_011094.1 identified by match to protein family HMM PF03610; PTS system fructose transporter subunit IIA 3852817 439843004019 SeSA_A3979 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system fructose transporter subunit IIA YP_002116713.1 3852392 R 439843 CDS YP_002116714.1 194737698 complement(3853036..3855834) 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF07728; sigma-54 dependent transcription regulator 3855834 439843004020 SeSA_A3980 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sigma-54 dependent transcription regulator YP_002116714.1 3853036 R 439843 CDS YP_002116715.1 194738199 complement(3855846..3855959) 1 NC_011094.1 identified by glimmer; hypothetical protein 3855959 439843004021 SeSA_A3981 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116715.1 3855846 R 439843 CDS YP_002116716.1 194735474 3856031..3856324 1 NC_011094.1 hypothetical protein 3856324 439843004022 SeSA_A3982 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116716.1 3856031 D 439843 CDS YP_002116717.1 194736129 3856430..3857812 1 NC_011094.1 identified by match to protein family HMM PF00232; beta-glucosidase 3857812 439843004023 SeSA_A3983 Salmonella enterica subsp. enterica serovar Schwarzengrund str. beta-glucosidase YP_002116717.1 3856430 D 439843 CDS YP_008119808.1 513549426 complement(3857872..3859065) 1 NC_011094.1 purine ribonucleoside efflux pump NepI 3859065 439843004024 SeSA_A3984 Salmonella enterica subsp. enterica serovar Schwarzengrund str. purine ribonucleoside efflux pump NepI YP_008119808.1 3857872 R 439843 CDS YP_002116718.1 194736257 3859236..3859640 1 NC_011094.1 identified by match to protein family HMM PF06296; hypothetical protein 3859640 439843004025 SeSA_A3985 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116718.1 3859236 D 439843 CDS YP_002116719.1 194737149 3859624..3859947 1 NC_011094.1 identified by match to protein family HMM PF01381; DNA-binding protein 3859947 439843004026 SeSA_A3986 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding protein YP_002116719.1 3859624 D 439843 CDS YP_002116720.1 194737733 3860132..3860911 1 NC_011094.1 hypothetical protein 3860911 439843004027 SeSA_A3987 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116720.1 3860132 D 439843 CDS YP_002116721.1 194734562 complement(3860939..3861100) 1 NC_011094.1 hypothetical protein 3861100 439843004028 SeSA_A3988 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116721.1 3860939 R 439843 CDS YP_002116722.1 194738161 complement(3861262..3861531) 1 NC_011094.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphotransferase system HPr enzyme 3861531 439843004029 SeSA_A3989 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase system HPr enzyme YP_002116722.1 3861262 R 439843 CDS YP_002116723.1 194734610 complement(3861541..3862401) 1 NC_011094.1 'class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis'; fructose-1,6-bisphosphate aldolase 3862401 gatY 439843004030 gatY Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-1,6-bisphosphate aldolase YP_002116723.1 3861541 R 439843 CDS YP_002116724.1 194734133 complement(3862464..3863948) 1 NC_011094.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; sugar kinase 3863948 439843004031 SeSA_A3991 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar kinase YP_002116724.1 3862464 R 439843 CDS YP_002116725.1 194736890 complement(3863941..3865299) 1 NC_011094.1 identified by match to protein family HMM PF03611; PTS system galactitol-specific transporter subunit IIC 3865299 439843004032 SeSA_A3992 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system galactitol-specific transporter subunit IIC YP_002116725.1 3863941 R 439843 CDS YP_002116726.1 194736414 complement(3865376..3865663) 1 NC_011094.1 PTS system transporter subunit IIB 3865663 439843004033 SeSA_A3993 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system transporter subunit IIB YP_002116726.1 3865376 R 439843 CDS YP_002116727.1 194737957 complement(3865660..3866133) 1 NC_011094.1 identified by match to protein family HMM PF00359; phosphotransferase system mannitol/fructose-specific IIA domain 3866133 439843004034 SeSA_A3994 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase system mannitol/fructose-specific IIA domain YP_002116727.1 3865660 R 439843 CDS YP_002116728.1 194737396 complement(3866151..3866894) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3866894 439843004035 SeSA_A3995 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GntR family transcriptional regulator YP_002116728.1 3866151 R 439843 CDS YP_002116729.1 194735013 complement(3867247..3867699) 1 NC_011094.1 identified by match to protein family HMM PF06711; hypothetical protein 3867699 439843004036 SeSA_A3996 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116729.1 3867247 R 439843 CDS YP_002116730.1 194734414 complement(3867892..3869283) 1 NC_011094.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 3869283 uhpT 439843004037 uhpT Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar phosphate antiporter YP_002116730.1 3867892 R 439843 CDS YP_002116731.1 194737383 complement(3869426..3870754) 1 NC_011094.1 membrane protein regulates uhpT expression; regulatory protein UhpC 3870754 uhpC 439843004038 uhpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein UhpC YP_002116731.1 3869426 R 439843 CDS YP_002116732.1 194734624 complement(3870764..3872266) 1 NC_011094.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 3872266 uhpB 439843004039 uhpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensory histidine kinase UhpB YP_002116732.1 3870764 R 439843 CDS YP_002116733.1 194738248 complement(3872266..3872856) 1 NC_011094.1 'response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter'; DNA-binding transcriptional activator UhpA 3872856 uhpA 439843004040 uhpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator UhpA YP_002116733.1 3872266 R 439843 CDS YP_002116734.1 194737627 complement(3873010..3874023) 1 NC_011094.1 DeoX 3874023 439843004041 SeSA_A4001 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DeoX YP_002116734.1 3873010 R 439843 CDS YP_002116735.1 194735578 complement(3874035..3875351) 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease 3875351 fucP 439843004042 fucP Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-fucose:H+ symporter permease YP_002116735.1 3874035 R 439843 CDS YP_002116736.1 194737087 complement(3875382..3876302) 1 NC_011094.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 3876302 rbsK 439843004043 rbsK Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribokinase YP_002116736.1 3875382 R 439843 CDS YP_002116737.1 194734015 3876627..3877412 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 3877412 439843004044 SeSA_A4004 Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribose operon repressor YP_002116737.1 3876627 D 439843 CDS YP_002116738.1 194736135 complement(3877414..3877704) 1 NC_011094.1 'with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit'; acetolactate synthase 1 regulatory subunit 3877704 ilvN 439843004045 ilvN Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase 1 regulatory subunit YP_002116738.1 3877414 R 439843 CDS YP_002116739.1 194738160 complement(3877708..3879396) 1 NC_011094.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit 3879396 ilvB 439843004046 ilvB Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase catalytic subunit YP_002116739.1 3877708 R 439843 CDS YP_002116740.1 194737734 3880417..3881277 1 NC_011094.1 identified by match to protein family HMM PF00892; hypothetical protein 3881277 439843004047 SeSA_A4007 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116740.1 3880417 D 439843 CDS YP_002116741.1 194736656 3881504..3882664 1 NC_011094.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3882664 emrD 439843004048 emrD Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein D YP_002116741.1 3881504 D 439843 CDS YP_002116742.1 194738266 complement(3883740..3884678) 1 NC_011094.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3884678 dsdC 439843004049 dsdC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator DsdC YP_002116742.1 3883740 R 439843 CDS YP_002116743.1 194735344 3884889..3886226 1 NC_011094.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3886226 439843004050 SeSA_A4010 Salmonella enterica subsp. enterica serovar Schwarzengrund str. permease DsdX YP_002116743.1 3884889 D 439843 CDS YP_002116744.1 194736441 3886244..3887566 1 NC_011094.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3887566 dsdA 439843004051 dsdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-serine dehydratase YP_002116744.1 3886244 D 439843 CDS YP_002116745.1 194734143 complement(3887648..3888178) 1 NC_011094.1 f165 3888178 439843004052 SeSA_A4012 Salmonella enterica subsp. enterica serovar Schwarzengrund str. f165 YP_002116745.1 3887648 R 439843 CDS YP_002116746.1 194736027 complement(3888175..3888537) 1 NC_011094.1 hypothetical protein 3888537 439843004053 SeSA_A4013 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116746.1 3888175 R 439843 CDS YP_002116747.1 194737749 complement(3888527..3888874) 1 NC_011094.1 identified by match to protein family HMM PF02656; hypothetical protein 3888874 439843004054 SeSA_A4014 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116747.1 3888527 R 439843 CDS YP_002116748.1 194735016 complement(3888894..3889028) 1 NC_011094.1 identified by glimmer; hypothetical protein 3889028 439843004055 SeSA_A4015 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116748.1 3888894 R 439843 CDS YP_002116749.1 194736000 3889028..3889156 1 NC_011094.1 identified by glimmer; hypothetical protein 3889156 439843004056 SeSA_A4016 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116749.1 3889028 D 439843 CDS YP_002116750.1 194737194 complement(3889318..3890979) 1 NC_011094.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 3890979 439843004057 SeSA_A4017 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116750.1 3889318 R 439843 CDS YP_002116751.1 194735814 complement(3891168..3891596) 1 NC_011094.1 '16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent'; heat shock chaperone IbpB 3891596 ibpB 439843004058 ibpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock chaperone IbpB YP_002116751.1 3891168 R 439843 CDS YP_002116752.1 194735295 complement(3891706..3892119) 1 NC_011094.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 3892119 ibpA 439843004059 ibpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. heat shock protein IbpA YP_002116752.1 3891706 R 439843 CDS YP_002116753.1 194734521 complement(3892383..3892502) 1 NC_011094.1 hypothetical protein 3892502 439843004060 SeSA_A4021 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116753.1 3892383 R 439843 CDS YP_002116754.1 194734019 3892471..3892761 1 NC_011094.1 identified by match to protein family HMM PF07119; hypothetical protein 3892761 439843004061 SeSA_A4020 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116754.1 3892471 D 439843 CDS YP_008119809.1 513549427 complement(3892763..3893989) 1 NC_011094.1 hypothetical protein 3893989 439843004062 SeSA_A4022 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119809.1 3892763 R 439843 CDS YP_002116755.1 194733905 complement(3894111..3895154) 1 NC_011094.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 3895154 439843004063 SeSA_A4023 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein H2 YP_002116755.1 3894111 R 439843 CDS YP_002116756.1 194738394 complement(3895151..3895708) 1 NC_011094.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE 3895708 439843004064 SeSA_A4024 Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol:disulfide interChange protein DsbE YP_002116756.1 3895151 R 439843 CDS YP_002116757.1 194737706 complement(3895705..3897636) 1 NC_011094.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 3897636 ccmF 439843004065 ccmF Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein CcmF YP_002116757.1 3895705 R 439843 CDS YP_002116758.1 194737111 complement(3897633..3898112) 1 NC_011094.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3898112 439843004066 SeSA_A4026 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c-type biogenesis protein CcmE YP_002116758.1 3897633 R 439843 CDS YP_002116759.1 194736019 complement(3898109..3898282) 1 NC_011094.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD 3898282 ccmD 439843004067 ccmD Salmonella enterica subsp. enterica serovar Schwarzengrund str. heme exporter protein CcmD YP_002116759.1 3898109 R 439843 CDS YP_002116760.1 194734999 complement(3898318..3899064) 1 NC_011094.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC transporter protein 3899064 439843004068 SeSA_A4028 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter protein YP_002116760.1 3898318 R 439843 CDS YP_002116761.1 194734379 complement(3899107..3899763) 1 NC_011094.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 3899763 ccmB 439843004069 ccmB Salmonella enterica subsp. enterica serovar Schwarzengrund str. heme exporter protein CcmB YP_002116761.1 3899107 R 439843 CDS YP_002116762.1 194734013 complement(3899763..3900380) 1 NC_011094.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3900380 ccmA 439843004070 ccmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c biogenesis protein CcmA YP_002116762.1 3899763 R 439843 CDS YP_002116763.1 194737894 complement(3900386..3901786) 1 NC_011094.1 identified by match to protein family HMM PF03150; cytoChrome-c peroxidase 3901786 439843004071 SeSA_A4031 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytoChrome-c peroxidase YP_002116763.1 3900386 R 439843 CDS YP_002116764.1 194738141 complement(3901976..3902608) 1 NC_011094.1 'TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor'; chaperone protein TorD 3902608 torD 439843004072 torD Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein TorD YP_002116764.1 3901976 R 439843 CDS YP_002116765.1 194737793 complement(3902601..3905153) 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA 3905153 torA 439843004073 torA Salmonella enterica subsp. enterica serovar Schwarzengrund str. trimethylamine-N-oxide reductase TorA YP_002116765.1 3902601 R 439843 CDS YP_002116766.1 194737058 complement(3905143..3906327) 1 NC_011094.1 identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; trimethylamine-N-oxide reductase c-type cytochrome TorC 3906327 torC 439843004074 torC Salmonella enterica subsp. enterica serovar Schwarzengrund str. trimethylamine-N-oxide reductase c-type cytochrome TorC YP_002116766.1 3905143 R 439843 CDS YP_002116767.1 194735802 3906421..3907149 1 NC_011094.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3907149 439843004075 SeSA_A4035 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator TorR YP_002116767.1 3906421 D 439843 CDS YP_002116768.1 194736586 complement(3907122..3908162) 1 NC_011094.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3908162 torT 439843004076 torT Salmonella enterica subsp. enterica serovar Schwarzengrund str. TMAO reductase system periplasmic protein TorT YP_002116768.1 3907122 R 439843 CDS YP_002116769.1 194733906 complement(3908187..3908303) 1 NC_011094.1 identified by glimmer; hypothetical protein 3908303 439843004077 SeSA_A4038 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116769.1 3908187 R 439843 CDS YP_002116770.1 194734419 3908290..3910977 1 NC_011094.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3910977 torS 439843004078 torS Salmonella enterica subsp. enterica serovar Schwarzengrund str. hybrid sensory histidine kinase TorS YP_002116770.1 3908290 D 439843 CDS YP_002116771.1 194734917 complement(3911082..3912209) 1 NC_011094.1 hypothetical protein 3912209 439843004079 SeSA_A4039 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116771.1 3911082 R 439843 CDS YP_002116772.1 194737960 complement(3912206..3913345) 1 NC_011094.1 outer membrane protein 3913345 439843004080 SeSA_A4040 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein YP_002116772.1 3912206 R 439843 CDS YP_002116773.1 194733951 complement(3913342..3914364) 1 NC_011094.1 hypothetical protein 3914364 439843004081 SeSA_A4041 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116773.1 3913342 R 439843 CDS YP_002116774.1 194736770 3914366..3914479 1 NC_011094.1 identified by glimmer; hypothetical protein 3914479 439843004082 SeSA_A4042 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116774.1 3914366 D 439843 CDS YP_002116775.1 194737423 complement(3914566..3915378) 1 NC_011094.1 'YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins'; sugar phosphatase 3915378 439843004083 SeSA_A4043 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar phosphatase YP_002116775.1 3914566 R 439843 CDS YP_002116776.1 194736132 3915684..3916946 1 NC_011094.1 identified by match to protein family HMM PF07690; permease 3916946 439843004084 SeSA_A4044 Salmonella enterica subsp. enterica serovar Schwarzengrund str. permease YP_002116776.1 3915684 D 439843 CDS YP_002116777.1 194736491 3916963..3918153 1 NC_011094.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing protein 3918153 439843004085 SeSA_A4045 Salmonella enterica subsp. enterica serovar Schwarzengrund str. mandelate racemase/muconate lactonizing protein YP_002116777.1 3916963 D 439843 CDS YP_002116778.1 194735080 3918268..3919164 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 3919164 439843004086 SeSA_A4046 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002116778.1 3918268 D 439843 CDS YP_002116779.1 194737072 complement(3919183..3921597) 1 NC_011094.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3921597 gyrB 439843004087 gyrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA gyrase subunit B YP_002116779.1 3919183 R 439843 CDS YP_002116780.1 194737823 complement(3921626..3922699) 1 NC_011094.1 'Required for DNA replication; binds preferentially to single-stranded, linear DNA'; recombination protein F 3922699 recF 439843004088 recF Salmonella enterica subsp. enterica serovar Schwarzengrund str. recombination protein F YP_002116780.1 3921626 R 439843 CDS YP_002116781.1 194738233 complement(3922847..3923947) 1 NC_011094.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3923947 dnaN 439843004089 dnaN Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit beta YP_002116781.1 3922847 R 439843 CDS YP_002116782.1 194736495 complement(3923952..3925352) 1 NC_011094.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 3925352 dnaA 439843004090 dnaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. chromosomal replication initiation protein YP_002116782.1 3923952 R 439843 CDS YP_002116783.1 194735765 3926013..3926153 1 NC_011094.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3926153 rpmH 439843004092 rpmH Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L34 YP_002116783.1 3926013 D 439843 CDS YP_002116784.1 194736278 3926170..3926529 1 NC_011094.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3926529 rnpA 439843004093 rnpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease P YP_002116784.1 3926170 D 439843 CDS YP_002116785.1 194734490 3926753..3928399 1 NC_011094.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3928399 439843004094 SeSA_A4054 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane protein translocase component YidC YP_002116785.1 3926753 D 439843 CDS YP_002116786.1 194736496 3928541..3929905 1 NC_011094.1 'in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE'; tRNA modification GTPase TrmE 3929905 trmE 439843004095 trmE Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA modification GTPase TrmE YP_002116786.1 3928541 D 439843 CDS YP_002116787.1 194734845 3930088..3931275 1 NC_011094.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 3931275 439843004096 SeSA_A4056 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug efflux system protein MdtL YP_002116787.1 3930088 D 439843 CDS YP_002116788.1 194737931 3931244..3932203 1 NC_011094.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 3932203 439843004097 SeSA_A4057 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YidZ YP_002116788.1 3931244 D 439843 CDS YP_002116789.1 194737587 3932361..3933116 1 NC_011094.1 o252 3933116 439843004098 SeSA_A4058 Salmonella enterica subsp. enterica serovar Schwarzengrund str. o252 YP_002116789.1 3932361 D 439843 CDS YP_002116790.1 194738206 3933134..3933700 1 NC_011094.1 identified by match to protein family HMM PF03358; hypothetical protein 3933700 439843004099 SeSA_A4059 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116790.1 3933134 D 439843 CDS YP_002116791.1 194734042 complement(3933744..3935081) 1 NC_011094.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; hypothetical protein 3935081 439843004100 SeSA_A4060 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116791.1 3933744 R 439843 CDS YP_002116792.1 194734695 3935250..3935915 1 NC_011094.1 'YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily'; 6-phosphogluconate phosphatase 3935915 439843004101 SeSA_A4061 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphogluconate phosphatase YP_002116792.1 3935250 D 439843 CDS YP_002116793.1 194736919 complement(3936010..3936735) 1 NC_011094.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3936735 phoU 439843004102 phoU Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator PhoU YP_002116793.1 3936010 R 439843 CDS YP_002116794.1 194736454 complement(3936750..3937559) 1 NC_011094.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3937559 pstB 439843004103 pstB Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate transporter ATP-binding protein YP_002116794.1 3936750 R 439843 CDS YP_002116795.1 194735967 complement(3937610..3938500) 1 NC_011094.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 3938500 pstA 439843004104 pstA Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate transporter permease subunit PtsA YP_002116795.1 3937610 R 439843 CDS YP_002116796.1 194735468 complement(3938500..3939459) 1 NC_011094.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 3939459 pstC 439843004105 pstC Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate transporter permease subunit PstC YP_002116796.1 3938500 R 439843 CDS YP_002116797.1 194734204 complement(3939596..3940636) 1 NC_011094.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 3940636 pstS 439843004106 pstS Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate ABC transporter substrate-binding protein YP_002116797.1 3939596 R 439843 CDS YP_002116798.1 194736592 complement(3940802..3942175) 1 NC_011094.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; pts system fructose-specific eiibc component 3942175 439843004107 SeSA_A4067 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pts system fructose-specific eiibc component YP_002116798.1 3940802 R 439843 CDS YP_002116799.1 194735709 complement(3942225..3943043) 1 NC_011094.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3943043 439843004108 SeSA_A4068 Salmonella enterica subsp. enterica serovar Schwarzengrund str. shikimate 5-dehydrogenase YP_002116799.1 3942225 R 439843 CDS YP_002116800.1 194735618 3943105..3944895 1 NC_011094.1 identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 3944895 439843004109 SeSA_A4069 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator SgrR YP_002116800.1 3943105 D 439843 CDS YP_002116801.1 194734687 complement(3945046..3946875) 1 NC_011094.1 'Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source'; glucosamine--fructose-6-phosphate aminotransferase 3946875 glmS 439843004110 glmS Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucosamine--fructose-6-phosphate aminotransferase YP_002116801.1 3945046 R 439843 CDS YP_002116802.1 194734047 complement(3947064..3948434) 1 NC_011094.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3948434 glmU 439843004111 glmU Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002116802.1 3947064 R 439843 CDS YP_002116803.1 194736058 complement(3948575..3948706) 1 NC_011094.1 identified by glimmer; hypothetical protein 3948706 439843004112 SeSA_A4072 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116803.1 3948575 R 439843 CDS YP_002116804.1 194735597 complement(3948754..3949452) 1 NC_011094.1 hypothetical protein 3949452 439843004113 SeSA_A4073 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116804.1 3948754 R 439843 CDS YP_002116805.1 194734799 complement(3949682..3950095) 1 NC_011094.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 3950095 atpC 439843004114 atpC Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit epsilon YP_002116805.1 3949682 R 439843 CDS YP_002116806.1 194734293 complement(3950122..3951504) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 3951504 atpD 439843004115 atpD Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit beta YP_002116806.1 3950122 R 439843 CDS YP_002116807.1 194737461 complement(3951531..3952394) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 3952394 atpG 439843004116 atpG Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit gamma YP_002116807.1 3951531 R 439843 CDS YP_002116808.1 194735882 complement(3952445..3953986) 1 NC_011094.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 3953986 atpA 439843004117 atpA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit alpha YP_002116808.1 3952445 R 439843 CDS YP_002116809.1 194735849 complement(3953999..3954532) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 3954532 atpH 439843004118 atpH Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit delta YP_002116809.1 3953999 R 439843 CDS YP_002116810.1 194737006 complement(3954547..3955017) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 3955017 atpF 439843004119 atpF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit B YP_002116810.1 3954547 R 439843 CDS YP_002116811.1 194736500 complement(3955077..3955316) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 3955316 atpE 439843004120 atpE Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit C YP_002116811.1 3955077 R 439843 CDS YP_002116812.1 194738307 complement(3955363..3956178) 1 NC_011094.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 3956178 atpB 439843004121 atpB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0F1 subunit A YP_002116812.1 3955363 R 439843 CDS YP_002116813.1 194738305 complement(3956187..3956312) 1 NC_011094.1 ATP synthase F0, I subunit 3956312 atpI 439843004122 atpI Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP synthase F0, I subunit YP_002116813.1 3956187 R 439843 CDS YP_002116814.1 194737831 complement(3956682..3956825) 1 NC_011094.1 hypothetical protein 3956825 439843004123 SeSA_A4083 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116814.1 3956682 R 439843 CDS YP_002116815.1 194734460 complement(3956933..3957070) 1 NC_011094.1 identified by glimmer; hypothetical protein 3957070 439843004124 SeSA_A4084 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116815.1 3956933 R 439843 CDS YP_002116816.1 194734008 complement(3957183..3957806) 1 NC_011094.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3957806 gidB 439843004125 gidB Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S rRNA methyltransferase GidB YP_002116816.1 3957183 R 439843 CDS YP_002116817.1 194737365 complement(3957909..3959798) 1 NC_011094.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3959798 gidA 439843004126 gidA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002116817.1 3957909 R 439843 CDS YP_002116818.1 194737178 complement(3960177..3960620) 1 NC_011094.1 'An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group'; flavodoxin 3960620 mioC 439843004127 mioC Salmonella enterica subsp. enterica serovar Schwarzengrund str. flavodoxin YP_002116818.1 3960177 R 439843 CDS YP_002116819.1 194737018 complement(3960710..3961168) 1 NC_011094.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3961168 asnC 439843004128 asnC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator AsnC YP_002116819.1 3960710 R 439843 CDS YP_002116820.1 194736421 3961319..3962311 1 NC_011094.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 3962311 asnA 439843004129 asnA Salmonella enterica subsp. enterica serovar Schwarzengrund str. asparagine synthetase AsnA YP_002116820.1 3961319 D 439843 CDS YP_002116821.1 194738013 complement(3962316..3963767) 1 NC_011094.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 3963767 yieM 439843004130 yieM Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116821.1 3962316 R 439843 CDS YP_002116822.1 194737339 complement(3963761..3965257) 1 NC_011094.1 'interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase'; regulatory ATPase RavA 3965257 439843004131 SeSA_A4091 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory ATPase RavA YP_002116822.1 3963761 R 439843 CDS YP_002116823.1 194733936 3965605..3967473 1 NC_011094.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 3967473 trkD 439843004132 trkD Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium transport protein Kup YP_002116823.1 3965605 D 439843 CDS YP_002116824.1 194734336 3967690..3968109 1 NC_011094.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 3968109 rbsD 439843004133 rbsD Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-ribose pyranase YP_002116824.1 3967690 D 439843 CDS YP_002116825.1 194735992 3968072..3969622 1 NC_011094.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 3969622 rbsA 439843004134 rbsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-ribose transporter ATP-binding protein YP_002116825.1 3968072 D 439843 CDS YP_002116826.1 194735352 3969628..3970593 1 NC_011094.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 3970593 rbsC 439843004135 rbsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribose ABC transporter permease YP_002116826.1 3969628 D 439843 CDS YP_002116827.1 194737768 3970618..3971508 1 NC_011094.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 3971508 rbsB 439843004136 rbsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-ribose transporter subunit RbsB YP_002116827.1 3970618 D 439843 CDS YP_002116828.1 194736817 3971641..3972570 1 NC_011094.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 3972570 rbsK 439843004137 rbsK Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribokinase YP_002116828.1 3971641 D 439843 CDS YP_002116829.1 194737791 3972574..3973572 1 NC_011094.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 3973572 439843004138 SeSA_A4098 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional repressor RbsR YP_002116829.1 3972574 D 439843 CDS YP_002116830.1 194737161 complement(3973538..3974965) 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO 3974965 439843004139 SeSA_A4099 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transport protein YieO YP_002116830.1 3973538 R 439843 CDS YP_002116831.1 194738253 complement(3974977..3975681) 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator, GntR family protein 3975681 439843004140 SeSA_A4100 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, GntR family protein YP_002116831.1 3974977 R 439843 CDS YP_002116832.1 194737743 complement(3981582..3982418) 1 NC_011094.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 3982418 439843004147 SeSA_A4108 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator HdfR YP_002116832.1 3981582 R 439843 CDS YP_002116833.1 194733980 3982537..3982875 1 NC_011094.1 identified by match to protein family HMM PF04219; hypothetical protein 3982875 439843004148 SeSA_A4109 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116833.1 3982537 D 439843 CDS YP_002116834.1 194734470 complement(3982900..3984420) 1 NC_011094.1 'among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function'; ATP-dependent protease 3984420 439843004149 SeSA_A4110 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent protease YP_002116834.1 3982900 R 439843 CDS YP_002116835.1 194736754 3985010..3986656 1 NC_011094.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 3986656 ilvG 439843004150 ilvG Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase 2 catalytic subunit YP_002116835.1 3985010 D 439843 CDS YP_002116836.1 194735286 3986653..3986916 1 NC_011094.1 acetolactate synthase 2 regulatory subunit 3986916 ilvM 439843004151 ilvM Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetolactate synthase 2 regulatory subunit YP_002116836.1 3986653 D 439843 CDS YP_002116837.1 194738273 3986934..3987863 1 NC_011094.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3987863 ilvE 439843004152 ilvE Salmonella enterica subsp. enterica serovar Schwarzengrund str. branched-chain amino acid aminotransferase YP_002116837.1 3986934 D 439843 CDS YP_002116838.1 194737799 3988023..3989873 1 NC_011094.1 'catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis'; dihydroxy-acid dehydratase 3989873 ilvD 439843004153 ilvD Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydroxy-acid dehydratase YP_002116838.1 3988023 D 439843 CDS YP_002116839.1 194734502 3989876..3991420 1 NC_011094.1 'threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway'; threonine dehydratase 3991420 ilvA 439843004154 ilvA Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine dehydratase YP_002116839.1 3989876 D 439843 CDS YP_002116840.1 194734030 3991442..3992227 1 NC_011094.1 identified by match to protein family HMM PF09365; hypothetical protein 3992227 439843004155 SeSA_A4116 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116840.1 3991442 D 439843 CDS YP_002116841.1 194735290 complement(3992626..3993015) 1 NC_011094.1 hypothetical protein 3993015 439843004156 SeSA_A4117 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116841.1 3992626 R 439843 CDS YP_002116842.1 194734229 complement(3993028..3993915) 1 NC_011094.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 3993915 439843004157 SeSA_A4118 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator IlvY YP_002116842.1 3993028 R 439843 CDS YP_002116843.1 194736177 3994080..3995555 1 NC_011094.1 'catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis'; ketol-acid reductoisomerase 3995555 439843004158 SeSA_A4119 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ketol-acid reductoisomerase YP_002116843.1 3994080 D 439843 CDS YP_002116844.1 194735487 complement(3995647..3995928) 1 NC_011094.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C 3995928 439843004159 SeSA_A4120 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase C YP_002116844.1 3995647 R 439843 CDS YP_002116845.1 194737343 3996032..3996823 1 NC_011094.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 3996823 439843004160 SeSA_A4121 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic nucleotide-binding domain-containing protein YP_002116845.1 3996032 D 439843 CDS YP_002116846.1 194737261 3996852..3997595 1 NC_011094.1 identified by match to protein family HMM PF01048; uridine phosphorylase 3997595 439843004161 SeSA_A4122 Salmonella enterica subsp. enterica serovar Schwarzengrund str. uridine phosphorylase YP_002116846.1 3996852 D 439843 CDS YP_002116847.1 194734953 3997592..3998323 1 NC_011094.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; intergral membrane NMN transport protein PnuC 3998323 439843004162 SeSA_A4123 Salmonella enterica subsp. enterica serovar Schwarzengrund str. intergral membrane NMN transport protein PnuC YP_002116847.1 3997592 D 439843 CDS YP_002116848.2 449306335 3998423..4000447 1 NC_011094.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4000447 rep 439843004163 rep Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent DNA helicase Rep YP_002116848.2 3998423 D 439843 CDS YP_002116849.1 194737882 complement(4000487..4001968) 1 NC_011094.1 'catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation'; guanosine pentaphosphate phosphohydrolase 4001968 gppA 439843004164 gppA Salmonella enterica subsp. enterica serovar Schwarzengrund str. guanosine pentaphosphate phosphohydrolase YP_002116849.1 4000487 R 439843 CDS YP_002116850.1 194737374 complement(4002087..4003352) 1 NC_011094.1 'enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation'; ATP-dependent RNA helicase RhlB 4003352 rhlB 439843004165 rhlB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent RNA helicase RhlB YP_002116850.1 4002087 R 439843 CDS YP_002116851.1 194735451 4003496..4003825 1 NC_011094.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4003825 trxA 439843004166 trxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. thioredoxin YP_002116851.1 4003496 D 439843 CDS YP_002116852.1 194736430 4004244..4005503 1 NC_011094.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4005503 rho 439843004167 rho Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription termination factor Rho YP_002116852.1 4004244 D 439843 CDS YP_002116853.1 194735803 4005733..4006836 1 NC_011094.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4006836 wecA 439843004168 wecA Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_002116853.1 4005733 D 439843 CDS YP_002116854.1 194736042 4006848..4007894 1 NC_011094.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4007894 439843004169 SeSA_A4130 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipopolysaccharide biosynthesis protein WzzE YP_002116854.1 4006848 D 439843 CDS YP_002116855.1 194737283 4007950..4009080 1 NC_011094.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4009080 439843004170 SeSA_A4131 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylglucosamine 2-epimerase YP_002116855.1 4007950 D 439843 CDS YP_002116856.1 194734662 4009077..4010339 1 NC_011094.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4010339 wecC 439843004171 wecC Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetyl-D-mannosamine dehydrogenase YP_002116856.1 4009077 D 439843 CDS YP_002116857.1 194737216 4010339..4011406 1 NC_011094.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4011406 rfbB2 439843004172 rfbB2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dTDP-glucose 4,6-dehydratase YP_002116857.1 4010339 D 439843 CDS YP_002116858.1 194736678 4011439..4012320 1 NC_011094.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 4012320 rfbA 439843004173 rfbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-1-phosphate thymidylyltransferase YP_002116858.1 4011439 D 439843 CDS YP_002116859.1 194738166 4012298..4012975 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4012975 wecD 439843004174 wecD Salmonella enterica subsp. enterica serovar Schwarzengrund str. TDP-fucosamine acetyltransferase YP_002116859.1 4012298 D 439843 CDS YP_002116860.1 194737693 4012980..4014110 1 NC_011094.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4014110 wecE 439843004175 wecE Salmonella enterica subsp. enterica serovar Schwarzengrund str. TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002116860.1 4012980 D 439843 CDS YP_002116861.1 194734150 4014112..4015362 1 NC_011094.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4015362 439843004176 SeSA_A4137 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polysaccharide biosynthesis protein YP_002116861.1 4014112 D 439843 CDS YP_002116862.1 194738194 4015359..4016438 1 NC_011094.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4016438 wecF 439843004177 wecF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-alpha-L-fucosyltransferase YP_002116862.1 4015359 D 439843 CDS YP_002116863.1 194735075 4016435..4017793 1 NC_011094.1 enterobacterial common antigen polymerase; common antigen polymerase 4017793 wzyE 439843004178 wzyE Salmonella enterica subsp. enterica serovar Schwarzengrund str. common antigen polymerase YP_002116863.1 4016435 D 439843 CDS YP_002116864.1 194734576 4017790..4018530 1 NC_011094.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4018530 439843004179 SeSA_A4140 Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetyl-D-mannosaminuronic acid transferase YP_002116864.1 4017790 D 439843 CDS YP_002116865.1 194735622 4018737..4020122 1 NC_011094.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4020122 439843004180 SeSA_A4141 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002116865.1 4018737 D 439843 CDS YP_002116866.1 194736113 4020686..4020850 1 NC_011094.1 identified by glimmer; hypothetical protein 4020850 439843004185 SeSA_A4146 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116866.1 4020686 D 439843 CDS YP_002116867.1 194737284 complement(4021239..4022438) 1 NC_011094.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein 4022438 hemY 439843004187 hemY Salmonella enterica subsp. enterica serovar Schwarzengrund str. protoheme IX biogenesis protein YP_002116867.1 4021239 R 439843 CDS YP_002116868.1 194738078 complement(4022438..4023607) 1 NC_011094.1 identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase 4023607 439843004188 SeSA_A4149 Salmonella enterica subsp. enterica serovar Schwarzengrund str. uroporphyrinogen III C-methyltransferase YP_002116868.1 4022438 R 439843 CDS YP_002116869.1 194734076 complement(4023629..4024369) 1 NC_011094.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4024369 hemD 439843004189 hemD Salmonella enterica subsp. enterica serovar Schwarzengrund str. uroporphyrinogen-III synthase YP_002116869.1 4023629 R 439843 CDS YP_002116870.1 194734788 complement(4024366..4025307) 1 NC_011094.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4025307 hemC 439843004190 hemC Salmonella enterica subsp. enterica serovar Schwarzengrund str. porphobilinogen deaminase YP_002116870.1 4024366 R 439843 CDS YP_002116871.1 194735336 4025684..4028230 1 NC_011094.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4028230 cyaA 439843004191 cyaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylate cyclase YP_002116871.1 4025684 D 439843 CDS YP_002116872.1 194736040 complement(4028308..4028628) 1 NC_011094.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4028628 cyaY 439843004192 cyaY Salmonella enterica subsp. enterica serovar Schwarzengrund str. frataxin-like protein YP_002116872.1 4028308 R 439843 CDS YP_002116873.1 194736896 complement(4028698..4029087) 1 NC_011094.1 hypothetical protein 4029087 439843004193 SeSA_A4154 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116873.1 4028698 R 439843 CDS YP_002116874.1 194735299 complement(4029066..4031078) 1 NC_011094.1 hypothetical protein 4031078 439843004194 SeSA_A4155 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116874.1 4029066 R 439843 CDS YP_002116875.1 194737174 4031264..4031467 1 NC_011094.1 lipoprotein 4031467 439843004195 SeSA_A4156 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002116875.1 4031264 D 439843 CDS YP_002116876.1 194735174 4031504..4032328 1 NC_011094.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4032328 dapF 439843004196 dapF Salmonella enterica subsp. enterica serovar Schwarzengrund str. diaminopimelate epimerase YP_002116876.1 4031504 D 439843 CDS YP_002116877.1 194735552 4032325..4033032 1 NC_011094.1 identified by match to protein family HMM PF04340; hypothetical protein 4033032 439843004197 SeSA_A4158 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116877.1 4032325 D 439843 CDS YP_002116878.1 194736121 4033029..4033931 1 NC_011094.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4033931 xerC 439843004198 xerC Salmonella enterica subsp. enterica serovar Schwarzengrund str. site-specific tyrosine recombinase XerC YP_002116878.1 4033029 D 439843 CDS YP_002116879.1 194734329 4033931..4034647 1 NC_011094.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4034647 439843004199 SeSA_A4160 Salmonella enterica subsp. enterica serovar Schwarzengrund str. flavin mononucleotide phosphatase YP_002116879.1 4033931 D 439843 CDS YP_002116880.1 194734777 4034783..4036945 1 NC_011094.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4036945 uvrD 439843004200 uvrD Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-dependent helicase II YP_002116880.1 4034783 D 439843 CDS YP_002116881.1 194737409 4037417..4038367 1 NC_011094.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4038367 corA 439843004201 corA Salmonella enterica subsp. enterica serovar Schwarzengrund str. magnesium/nickel/cobalt transporter CorA YP_002116881.1 4037417 D 439843 CDS YP_002116882.1 194737911 complement(4038441..4039337) 1 NC_011094.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 4039337 rarD 439843004202 rarD Salmonella enterica subsp. enterica serovar Schwarzengrund str. RarD protein YP_002116882.1 4038441 R 439843 CDS YP_002116883.1 194736400 complement(4039381..4039848) 1 NC_011094.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 4039848 439843004203 SeSA_A4164 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116883.1 4039381 R 439843 CDS YP_002116884.1 194736893 4040013..4040882 1 NC_011094.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4040882 439843004204 SeSA_A4165 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phospholipase A YP_002116884.1 4040013 D 439843 CDS YP_002116885.1 194735447 4040948..4042795 1 NC_011094.1 'functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway'; ATP-dependent DNA helicase RecQ 4042795 recQ 439843004205 recQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent DNA helicase RecQ YP_002116885.1 4040948 D 439843 CDS YP_002116886.1 194735958 4042859..4043479 1 NC_011094.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4043479 439843004206 SeSA_A4167 Salmonella enterica subsp. enterica serovar Schwarzengrund str. threonine efflux system YP_002116886.1 4042859 D 439843 CDS YP_002116887.1 194736002 complement(4043519..4044139) 1 NC_011094.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein 4044139 rhtB 439843004207 rhtB Salmonella enterica subsp. enterica serovar Schwarzengrund str. homoserine/homoserine lactone efflux protein YP_002116887.1 4043519 R 439843 CDS YP_002116888.1 194736470 4044250..4045266 1 NC_011094.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4045266 pldB 439843004208 pldB Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysophospholipase L2 YP_002116888.1 4044250 D 439843 CDS YP_008119810.1 513549429 4045282..4046082 1 NC_011094.1 sugar phosphatase 4046082 439843004209 SeSA_A4170 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar phosphatase YP_008119810.1 4045282 D 439843 CDS YP_002116889.1 194737515 complement(4046950..4047903) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR 4047903 metR 439843004210 metR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator MetR YP_002116889.1 4046950 R 439843 CDS YP_002116890.1 194738289 4048152..4050416 1 NC_011094.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4050416 metE 439843004211 metE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_002116890.1 4048152 D 439843 CDS YP_002116891.1 194737906 4050480..4050599 1 NC_011094.1 identified by glimmer; hypothetical protein 4050599 439843004212 SeSA_A4173 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116891.1 4050480 D 439843 CDS YP_002116892.1 194734759 4050751..4052094 1 NC_011094.1 identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4052094 439843004213 SeSA_A4174 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chondroitin sulfate/heparin utilization regulation protein YP_002116892.1 4050751 D 439843 CDS YP_002116893.2 449306336 complement(4052174..4052986) 1 NC_011094.1 identified by match to protein family HMM PF01738; dienelactone hydrolase 4052986 439843004214 SeSA_A4175 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dienelactone hydrolase YP_002116893.2 4052174 R 439843 CDS YP_002116894.1 194735544 4053245..4054006 1 NC_011094.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4054006 udp 439843004215 udp Salmonella enterica subsp. enterica serovar Schwarzengrund str. uridine phosphorylase YP_002116894.1 4053245 D 439843 CDS YP_002116895.1 194736158 4054146..4055576 1 NC_011094.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4055576 439843004216 SeSA_A4177 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA recombination protein RmuC YP_002116895.1 4054146 D 439843 CDS YP_002116896.1 194736114 4055672..4056427 1 NC_011094.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4056427 ubiE 439843004217 ubiE Salmonella enterica subsp. enterica serovar Schwarzengrund str. ubiquinone/menaquinone biosynthesis methyltransferase YP_002116896.1 4055672 D 439843 CDS YP_002116897.1 194734316 4056437..4057042 1 NC_011094.1 identified by match to protein family HMM PF02036; hypothetical protein 4057042 439843004218 SeSA_A4179 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116897.1 4056437 D 439843 CDS YP_002116898.1 194734837 4057039..4058679 1 NC_011094.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4058679 ubiB 439843004219 ubiB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ubiquinone biosynthesis protein UbiB YP_002116898.1 4057039 D 439843 CDS YP_002116899.1 194737798 4058886..4059140 1 NC_011094.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4059140 tatA 439843004220 tatA Salmonella enterica subsp. enterica serovar Schwarzengrund str. twin arginine translocase protein A YP_002116899.1 4058886 D 439843 CDS YP_002116900.1 194737482 4059144..4059692 1 NC_011094.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4059692 439843004221 SeSA_A4182 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sec-independent translocase YP_002116900.1 4059144 D 439843 CDS YP_002116901.1 194736563 4059695..4060474 1 NC_011094.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4060474 tatC 439843004222 tatC Salmonella enterica subsp. enterica serovar Schwarzengrund str. twin-arginine protein translocation system subunit TatC YP_002116901.1 4059695 D 439843 CDS YP_002116902.1 194736264 4060504..4061298 1 NC_011094.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4061298 439843004223 SeSA_A4184 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNase TatD YP_002116902.1 4060504 D 439843 CDS YP_002116903.1 194736748 complement(4061306..4061794) 1 NC_011094.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH 4061794 rfaH 439843004224 rfaH Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator RfaH YP_002116903.1 4061306 R 439843 CDS YP_002116904.1 194735887 4061980..4063458 1 NC_011094.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4063458 ubiD 439843004225 ubiD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002116904.1 4061980 D 439843 CDS YP_002116905.1 194735204 4063544..4064245 1 NC_011094.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4064245 fre 439843004226 fre Salmonella enterica subsp. enterica serovar Schwarzengrund str. FMN reductase YP_002116905.1 4063544 D 439843 CDS YP_002116906.1 194735990 4064499..4066322 1 NC_011094.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4066322 439843004227 SeSA_A4188 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfotransferase YP_002116906.1 4064499 D 439843 CDS YP_002116907.1 194735609 complement(4066519..4067682) 1 NC_011094.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4067682 fadA 439843004228 fadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-ketoacyl-CoA thiolase YP_002116907.1 4066519 R 439843 CDS YP_002116908.1 194734920 complement(4067692..4069881) 1 NC_011094.1 'includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids'; multifunctional fatty acid oxidation complex subunit alpha 4069881 fadB 439843004229 fadB Salmonella enterica subsp. enterica serovar Schwarzengrund str. multifunctional fatty acid oxidation complex subunit alpha YP_002116908.1 4067692 R 439843 CDS YP_002116909.1 194734586 4070071..4071402 1 NC_011094.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4071402 pepQ 439843004230 pepQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. proline dipeptidase YP_002116909.1 4070071 D 439843 CDS YP_002116910.1 194734464 4071402..4072016 1 NC_011094.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4072016 439843004231 SeSA_A4192 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116910.1 4071402 D 439843 CDS YP_002116911.1 194734162 4072055..4073506 1 NC_011094.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4073506 trkH 439843004232 trkH Salmonella enterica subsp. enterica serovar Schwarzengrund str. potassium transporter YP_002116911.1 4072055 D 439843 CDS YP_002116912.1 194738228 4073518..4074063 1 NC_011094.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4074063 hemG 439843004233 hemG Salmonella enterica subsp. enterica serovar Schwarzengrund str. protoporphyrinogen oxidase YP_002116912.1 4073518 D 439843 CDS YP_002116913.1 194736174 complement(4079455..4079613) 1 NC_011094.1 identified by glimmer; hypothetical protein 4079613 439843004238 SeSA_A4202 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116913.1 4079455 R 439843 CDS YP_002116914.1 194736361 complement(4080021..4080551) 1 NC_011094.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4080551 mobB 439843004240 mobB Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_002116914.1 4080021 R 439843 CDS YP_002116915.1 194737951 complement(4080533..4081117) 1 NC_011094.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4081117 mobA 439843004241 mobA Salmonella enterica subsp. enterica serovar Schwarzengrund str. molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_002116915.1 4080533 R 439843 CDS YP_002116916.1 194737291 4081187..4081456 1 NC_011094.1 identified by match to protein family HMM PF06288; hypothetical protein 4081456 439843004242 SeSA_A4205 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116916.1 4081187 D 439843 CDS YP_002116917.1 194734981 4081533..4082519 1 NC_011094.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4082519 439843004243 SeSA_A4206 Salmonella enterica subsp. enterica serovar Schwarzengrund str. serine/threonine protein kinase YP_002116917.1 4081533 D 439843 CDS YP_002116918.1 194734971 4082536..4083159 1 NC_011094.1 identified by match to protein family HMM PF01323; protein disulfide isomerase I 4083159 439843004244 SeSA_A4207 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein disulfide isomerase I YP_002116918.1 4082536 D 439843 CDS YP_002116919.1 194734246 complement(4083172..4084080) 1 NC_011094.1 identified by match to protein family HMM PF01553; acyltransferase 4084080 439843004245 SeSA_A4208 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acyltransferase YP_002116919.1 4083172 R 439843 CDS YP_002116920.1 194735921 complement(4084278..4084409) 1 NC_011094.1 identified by glimmer; hypothetical protein 4084409 439843004246 SeSA_A4209 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116920.1 4084278 R 439843 CDS YP_002116921.1 194736970 4084468..4087254 1 NC_011094.1 'has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair'; DNA polymerase I 4087254 polA 439843004247 polA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase I YP_002116921.1 4084468 D 439843 CDS YP_002116922.1 194736984 complement(4087589..4088221) 1 NC_011094.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4088221 engB 439843004249 engB Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome biogenesis GTP-binding protein YsxC YP_002116922.1 4087589 R 439843 CDS YP_002116923.1 194736354 4088804..4089319 1 NC_011094.1 identified by match to protein family HMM PF04220; hypothetical protein 4089319 439843004251 SeSA_A4214 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116923.1 4088804 D 439843 CDS YP_002116924.1 194737499 4089508..4090881 1 NC_011094.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4090881 hemN 439843004252 hemN Salmonella enterica subsp. enterica serovar Schwarzengrund str. coproporphyrinogen III oxidase YP_002116924.1 4089508 D 439843 CDS YP_002116925.1 194734261 complement(4091194..4092603) 1 NC_011094.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4092603 glnG 439843004253 glnG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrogen regulation protein NR(I) YP_002116925.1 4091194 R 439843 CDS YP_002116926.1 194736166 complement(4092612..4093661) 1 NC_011094.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4093661 glnL 439843004254 glnL Salmonella enterica subsp. enterica serovar Schwarzengrund str. nitrogen regulation protein NR(II) YP_002116926.1 4092612 R 439843 CDS YP_002116927.1 194736881 complement(4093936..4095345) 1 NC_011094.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4095345 glnA 439843004255 glnA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamine synthetase YP_002116927.1 4093936 R 439843 CDS YP_002116928.1 194736407 4095721..4097544 1 NC_011094.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4097544 typA 439843004256 typA Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP-binding protein YP_002116928.1 4095721 D 439843 CDS YP_002116929.1 194737856 complement(4097599..4098333) 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase 4098333 439843004257 SeSA_A4220 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hydrolase YP_002116929.1 4097599 R 439843 CDS YP_002116930.1 194737434 complement(4098318..4099196) 1 NC_011094.1 hypothetical protein 4099196 439843004258 SeSA_A4221 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116930.1 4098318 R 439843 CDS YP_002116931.1 194737437 complement(4099193..4100434) 1 NC_011094.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4100434 439843004259 SeSA_A4222 Salmonella enterica subsp. enterica serovar Schwarzengrund str. coproporphyrinogen III oxidase YP_002116931.1 4099193 R 439843 CDS YP_002116932.1 194734374 complement(4100436..4101311) 1 NC_011094.1 membrane-associated metal-dependent hydrolase 4101311 439843004260 SeSA_A4223 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane-associated metal-dependent hydrolase YP_002116932.1 4100436 R 439843 CDS YP_002116933.1 194735951 complement(4101304..4102290) 1 NC_011094.1 identified by match to protein family HMM PF08443; hypothetical protein 4102290 439843004261 SeSA_A4224 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116933.1 4101304 R 439843 CDS YP_002116934.1 194736036 complement(4102342..4103190) 1 NC_011094.1 hypothetical protein 4103190 439843004262 SeSA_A4225 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116934.1 4102342 R 439843 CDS YP_002116935.1 194734369 complement(4103347..4104039) 1 NC_011094.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4104039 ompL 439843004263 ompL Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane porin L YP_002116935.1 4103347 R 439843 CDS YP_002116936.1 194735039 complement(4104107..4105528) 1 NC_011094.1 identified by match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4105528 439843004264 SeSA_A4227 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar (Glycoside-Pentoside-Hexuronide) transporter YP_002116936.1 4104107 R 439843 CDS YP_002116937.1 194735020 complement(4105574..4106956) 1 NC_011094.1 identified by match to protein family HMM TIGR00792; inner membrane symporter YihP 4106956 439843004265 SeSA_A4228 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane symporter YihP YP_002116937.1 4105574 R 439843 CDS YP_002116938.1 194737357 complement(4107002..4109038) 1 NC_011094.1 identified by match to protein family HMM PF01055; alpha-glucosidase 4109038 439843004266 SeSA_A4229 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-glucosidase YP_002116938.1 4107002 R 439843 CDS YP_002116939.1 194737983 complement(4109082..4109924) 1 NC_011094.1 identified by match to protein family HMM PF01263; aldose-1-epimerase 4109924 439843004267 SeSA_A4230 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldose-1-epimerase YP_002116939.1 4109082 R 439843 CDS YP_002116940.1 194736382 complement(4109943..4111184) 1 NC_011094.1 identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase 4111184 439843004268 SeSA_A4231 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acylglucosamine 2-epimerase YP_002116940.1 4109943 R 439843 CDS YP_002116941.1 194736335 complement(4111200..4112078) 1 NC_011094.1 identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase 4112078 439843004269 SeSA_A4232 Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribose-phosphate aldolase YP_002116941.1 4111200 R 439843 CDS YP_002116942.1 194736938 complement(4112101..4112997) 1 NC_011094.1 identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 4112997 439843004270 SeSA_A4233 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-hydroxyisobutyrate dehydrogenase YP_002116942.1 4112101 R 439843 CDS YP_002116943.1 194735908 complement(4112985..4113104) 1 NC_011094.1 identified by glimmer; hypothetical protein 4113104 439843004271 SeSA_A4234 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116943.1 4112985 R 439843 CDS YP_002116944.1 194738247 4113162..4114058 1 NC_011094.1 identified by match to protein family HMM PF00294; kinase, PfkB family protein 4114058 439843004272 SeSA_A4235 Salmonella enterica subsp. enterica serovar Schwarzengrund str. kinase, PfkB family protein YP_002116944.1 4113162 D 439843 CDS YP_002116945.1 194734055 4114092..4114895 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4114895 439843004273 SeSA_A4236 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate regulon repressor YP_002116945.1 4114092 D 439843 CDS YP_002116946.1 194734698 4115086..4115685 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4115685 yihX 439843004274 yihX Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatase YP_002116946.1 4115086 D 439843 CDS YP_002116947.1 194734561 4115679..4116551 1 NC_011094.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4116551 rbn 439843004275 rbn Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease BN YP_002116947.1 4115679 D 439843 CDS YP_002116948.1 194735196 4116548..4116985 1 NC_011094.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4116985 dtd 439843004276 dtd Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-tyrosyl-tRNA(Tyr) deacylase YP_002116948.1 4116548 D 439843 CDS YP_002116949.1 194736636 4116982..4117971 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM PF09500; match to protein family HMM TIGR02447; acetyltransferase, gnat family protein 4117971 439843004277 SeSA_A4240 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase, gnat family protein YP_002116949.1 4116982 D 439843 CDS YP_002116950.1 194736212 complement(4117986..4118414) 1 NC_011094.1 identified by match to protein family HMM PF01381; Sea41 4118414 439843004278 SeSA_A4241 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Sea41 YP_002116950.1 4117986 R 439843 CDS YP_002116951.1 194737092 complement(4118429..4118740) 1 NC_011094.1 Sea40 4118740 439843004279 SeSA_A4242 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Sea40 YP_002116951.1 4118429 R 439843 CDS YP_002116952.1 194737806 complement(4118826..4119755) 1 NC_011094.1 identified by match to protein family HMM PF07859; acetyl esterase 4119755 439843004280 SeSA_A4243 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl esterase YP_002116952.1 4118826 R 439843 CDS YP_002116953.1 194738106 complement(4119949..4120068) 1 NC_011094.1 hypothetical protein 4120068 439843004281 SeSA_A4245 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116953.1 4119949 R 439843 CDS YP_002116954.1 194734386 4119973..4120284 1 NC_011094.1 hypothetical protein 4120284 439843004282 SeSA_A4244 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116954.1 4119973 D 439843 CDS YP_002116955.1 194735956 4120285..4120575 1 NC_011094.1 identified by match to protein family HMM PF01381; transcriptional regulator, XRE family protein 4120575 439843004283 SeSA_A4246 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, XRE family protein YP_002116955.1 4120285 D 439843 CDS YP_002116956.1 194735443 complement(4120622..4121551) 1 NC_011094.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4121551 fdhE 439843004284 fdhE Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase accessory protein FdhE YP_002116956.1 4120622 R 439843 CDS YP_002116957.1 194735225 complement(4121548..4122183) 1 NC_011094.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4122183 fdoI 439843004285 fdoI Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase-O subunit gamma YP_002116957.1 4121548 R 439843 CDS YP_002116958.1 194737000 complement(4122180..4123082) 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O, iron-sulfur subunit 4123082 fdoH 439843004286 fdoH Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase-O, iron-sulfur subunit YP_002116958.1 4122180 R 439843 CDS YP_002116959.1 194737690 4126340..4127176 1 NC_011094.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4127176 fdhD 439843004288 fdhD Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate dehydrogenase accessory protein YP_002116959.1 4126340 D 439843 CDS YP_002116960.1 194734958 4127369..4128469 1 NC_011094.1 hypothetical protein 4128469 439843004289 SeSA_A4253 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116960.1 4127369 D 439843 CDS YP_002116961.1 194734623 complement(4128825..4129148) 1 NC_011094.1 identified by match to protein family HMM PF05437; branched-chain amino acid transporter 4129148 439843004290 SeSA_A4254 Salmonella enterica subsp. enterica serovar Schwarzengrund str. branched-chain amino acid transporter YP_002116961.1 4128825 R 439843 CDS YP_002116962.1 194736980 complement(4129148..4129807) 1 NC_011094.1 identified by match to protein family HMM PF03591; AzlC family protein 4129807 439843004291 SeSA_A4255 Salmonella enterica subsp. enterica serovar Schwarzengrund str. AzlC family protein YP_002116962.1 4129148 R 439843 CDS YP_002116963.1 194736659 4129908..4130456 1 NC_011094.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; transcriptional regulator, XRE family protein 4130456 439843004292 SeSA_A4256 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, XRE family protein YP_002116963.1 4129908 D 439843 CDS YP_002116964.1 194737975 complement(4130545..4130859) 1 NC_011094.1 identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase 4130859 rhaU 439843004293 rhaU Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-rhamnose 1-epimerase YP_002116964.1 4130545 R 439843 CDS YP_002116965.1 194734198 complement(4130856..4132004) 1 NC_011094.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase 4132004 fucO 439843004294 fucO Salmonella enterica subsp. enterica serovar Schwarzengrund str. lactaldehyde reductase YP_002116965.1 4130856 R 439843 CDS YP_002116966.1 194735870 complement(4132131..4132958) 1 NC_011094.1 identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase 4132958 rhaD 439843004295 rhaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. rhamnulose-1-phosphate aldolase YP_002116966.1 4132131 R 439843 CDS YP_002116967.1 194735576 complement(4133101..4134360) 1 NC_011094.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4134360 rhaA 439843004296 rhaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-rhamnose isomerase YP_002116967.1 4133101 R 439843 CDS YP_002116968.1 194737182 complement(4134357..4135826) 1 NC_011094.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4135826 rhaB 439843004297 rhaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. rhamnulokinase YP_002116968.1 4134357 R 439843 CDS YP_002116969.1 194736850 4136114..4136950 1 NC_011094.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4136950 439843004298 SeSA_A4262 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator RhaS YP_002116969.1 4136114 D 439843 CDS YP_002116970.1 194738122 4137103..4137951 1 NC_011094.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4137951 439843004299 SeSA_A4263 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional activator RhaR YP_002116970.1 4137103 D 439843 CDS YP_002116971.1 194736245 complement(4137948..4138982) 1 NC_011094.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4138982 rhaT 439843004300 rhaT Salmonella enterica subsp. enterica serovar Schwarzengrund str. rhamnose-proton symporter YP_002116971.1 4137948 R 439843 CDS YP_002116972.1 194738365 4138986..4139117 1 NC_011094.1 hypothetical protein 4139117 439843004301 SeSA_A4265 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116972.1 4138986 D 439843 CDS YP_002116973.1 194736617 4139152..4139265 1 NC_011094.1 identified by glimmer; hypothetical protein 4139265 439843004302 SeSA_A4266 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116973.1 4139152 D 439843 CDS YP_002116974.1 194735097 4139451..4139576 1 NC_011094.1 identified by glimmer; hypothetical protein 4139576 439843004303 SeSA_A4267 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116974.1 4139451 D 439843 CDS YP_002116975.1 194734730 4139613..4140284 1 NC_011094.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4140284 439843004304 SeSA_A4268 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligogalacturonate-specific porin YP_002116975.1 4139613 D 439843 CDS YP_002116976.1 194737524 complement(4140442..4141749) 1 NC_011094.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter dctm subunit 4141749 439843004305 SeSA_A4269 Salmonella enterica subsp. enterica serovar Schwarzengrund str. trap dicarboxylate transporter dctm subunit YP_002116976.1 4140442 R 439843 CDS YP_002116977.1 194737674 complement(4141742..4142257) 1 NC_011094.1 identified by match to protein family HMM PF04290; trap dicarboxylate transporter dctq subunit 4142257 439843004306 SeSA_A4270 Salmonella enterica subsp. enterica serovar Schwarzengrund str. trap dicarboxylate transporter dctq subunit YP_002116977.1 4141742 R 439843 CDS YP_002116978.1 194738179 complement(4142276..4143259) 1 NC_011094.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter dctp subunit 4143259 439843004307 SeSA_A4271 Salmonella enterica subsp. enterica serovar Schwarzengrund str. trap dicarboxylate transporter dctp subunit YP_002116978.1 4142276 R 439843 CDS YP_002116979.1 194736704 4143588..4144208 1 NC_011094.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4144208 sodA 439843004308 sodA Salmonella enterica subsp. enterica serovar Schwarzengrund str. superoxide dismutase YP_002116979.1 4143588 D 439843 CDS YP_002116980.1 194737205 4144278..4144967 1 NC_011094.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4144967 439843004309 SeSA_A4273 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116980.1 4144278 D 439843 CDS YP_002116981.1 194735169 4144979..4145374 1 NC_011094.1 hypothetical protein 4145374 439843004310 SeSA_A4274 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116981.1 4144979 D 439843 CDS YP_002116982.1 194737962 complement(4145425..4146798) 1 NC_011094.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4146798 cpxA 439843004311 cpxA Salmonella enterica subsp. enterica serovar Schwarzengrund str. two-component sensor protein YP_002116982.1 4145425 R 439843 CDS YP_002116983.1 194736327 complement(4146795..4147493) 1 NC_011094.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4147493 cpxR 439843004312 cpxR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator CpxR YP_002116983.1 4146795 R 439843 CDS YP_002116984.1 194736772 4147644..4148144 1 NC_011094.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4148144 cpxP 439843004313 cpxP Salmonella enterica subsp. enterica serovar Schwarzengrund str. repressor CpxP YP_002116984.1 4147644 D 439843 CDS YP_002116985.1 194736926 4148292..4149194 1 NC_011094.1 'member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers'; ferrous iron efflux protein F 4149194 fieF 439843004314 fieF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferrous iron efflux protein F YP_002116985.1 4148292 D 439843 CDS YP_002116986.1 194736045 4149379..4150341 1 NC_011094.1 'catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis'; 6-phosphofructokinase 4150341 pfkA 439843004315 pfkA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 6-phosphofructokinase YP_002116986.1 4149379 D 439843 CDS YP_002116987.1 194734199 4150545..4151534 1 NC_011094.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4151534 439843004316 SeSA_A4280 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfate transporter subunit YP_002116987.1 4150545 D 439843 CDS YP_008119811.1 513549430 4151635..4152390 1 NC_011094.1 CDP-diacylglycerol pyrophosphatase 4152390 cdh 439843004317 cdh Salmonella enterica subsp. enterica serovar Schwarzengrund str. CDP-diacylglycerol pyrophosphatase YP_008119811.1 4151635 D 439843 CDS YP_002116988.1 194735102 4152653..4153987 1 NC_011094.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4153987 439843004318 SeSA_A4282 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar (Glycoside-Pentoside-Hexuronide) transporter YP_002116988.1 4152653 D 439843 CDS YP_002116989.1 194735757 4153998..4154957 1 NC_011094.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4154957 439843004319 SeSA_A4283 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoimidazole riboside kinase YP_002116989.1 4153998 D 439843 CDS YP_002116990.1 194734227 4154967..4156007 1 NC_011094.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase superfamily protein 4156007 439843004320 SeSA_A4284 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ADP-ribosylglycohydrolase superfamily protein YP_002116990.1 4154967 D 439843 CDS YP_002116991.1 194736476 4156070..4156792 1 NC_011094.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; regulatory protein GntR family protein 4156792 439843004321 SeSA_A4285 Salmonella enterica subsp. enterica serovar Schwarzengrund str. regulatory protein GntR family protein YP_002116991.1 4156070 D 439843 CDS YP_002116992.1 194735168 complement(4157291..4157641) 1 NC_011094.1 identified by match to protein family HMM PF07883; polyketide synthase 4157641 439843004322 SeSA_A4287 Salmonella enterica subsp. enterica serovar Schwarzengrund str. polyketide synthase YP_002116992.1 4157291 R 439843 CDS YP_002116993.1 194734566 complement(4157655..4159205) 1 NC_011094.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase 4159205 439843004323 SeSA_A4288 Salmonella enterica subsp. enterica serovar Schwarzengrund str. autoinducer-2 (AI-2) kinase YP_002116993.1 4157655 R 439843 CDS YP_002116994.1 194734803 complement(4159334..4160293) 1 NC_011094.1 identified by match to protein family HMM PF04198; sugar-binding domain-containing protein 4160293 439843004324 SeSA_A4289 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar-binding domain-containing protein YP_002116994.1 4159334 R 439843 CDS YP_002116995.1 194737961 4160549..4162084 1 NC_011094.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4162084 439843004325 SeSA_A4290 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein ego YP_002116995.1 4160549 D 439843 CDS YP_002116996.1 194738301 4162081..4163121 1 NC_011094.1 identified by match to protein family HMM PF02653; ABC transporter permease 4163121 439843004326 SeSA_A4291 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002116996.1 4162081 D 439843 CDS YP_002116997.1 194736325 4163121..4164119 1 NC_011094.1 identified by match to protein family HMM PF02653; ABC transporter permease 4164119 439843004327 SeSA_A4292 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter permease YP_002116997.1 4163121 D 439843 CDS YP_002116998.1 194735672 4164127..4165170 1 NC_011094.1 hypothetical protein 4165170 439843004328 SeSA_A4293 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002116998.1 4164127 D 439843 CDS YP_002116999.1 194735366 4165199..4166074 1 NC_011094.1 identified by match to protein family HMM PF01791; aldolase 4166074 439843004329 SeSA_A4294 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aldolase YP_002116999.1 4165199 D 439843 CDS YP_002117000.1 194735869 4166118..4166447 1 NC_011094.1 identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4166447 439843004330 SeSA_A4295 Salmonella enterica subsp. enterica serovar Schwarzengrund str. autoinducer-2 (AI-2) modifying protein LsrG YP_002117000.1 4166118 D 439843 CDS YP_002117001.1 194733952 4166457..4167221 1 NC_011094.1 identified by match to protein family HMM PF00834; epimerase 4167221 439843004331 SeSA_A4296 Salmonella enterica subsp. enterica serovar Schwarzengrund str. epimerase YP_002117001.1 4166457 D 439843 CDS YP_002117002.1 194734570 complement(4167313..4168080) 1 NC_011094.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4168080 tpiA 439843004332 tpiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. triosephosphate isomerase YP_002117002.1 4167313 R 439843 CDS YP_002117003.1 194734394 complement(4168193..4168789) 1 NC_011094.1 identified by match to protein family HMM PF07305; hypothetical protein 4168789 439843004333 SeSA_A4298 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117003.1 4168193 R 439843 CDS YP_002117004.1 194734758 4168890..4169318 1 NC_011094.1 identified by match to protein family HMM PF05656; hypothetical protein 4169318 439843004334 SeSA_A4299 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117004.1 4168890 D 439843 CDS YP_002117005.1 194737557 complement(4169428..4170174) 1 NC_011094.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 4170174 439843004335 SeSA_A4300 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferredoxin-NADP reductase YP_002117005.1 4169428 R 439843 CDS YP_002117006.1 194738040 complement(4170271..4171281) 1 NC_011094.1 'type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese'; fructose 1,6-bisphosphatase II 4171281 glpX 439843004336 glpX Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose 1,6-bisphosphatase II YP_002117006.1 4170271 R 439843 CDS YP_002117007.1 194735720 complement(4171393..4172901) 1 NC_011094.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4172901 glpK 439843004337 glpK Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol kinase YP_002117007.1 4171393 R 439843 CDS YP_002117008.1 194736411 complement(4172922..4173767) 1 NC_011094.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 4173767 glpF 439843004338 glpF Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol uptake facilitator protein YP_002117008.1 4172922 R 439843 CDS YP_002117009.1 194735584 4174166..4174405 1 NC_011094.1 identified by match to protein family HMM PF06005; hypothetical protein 4174405 439843004339 SeSA_A4304 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117009.1 4174166 D 439843 CDS YP_002117010.1 194735603 complement(4174627..4175112) 1 NC_011094.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4175112 rraA 439843004340 rraA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribonuclease activity regulator protein RraA YP_002117010.1 4174627 R 439843 CDS YP_002117011.1 194738345 complement(4175205..4176146) 1 NC_011094.1 'catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate'; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4176146 menA 439843004341 menA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002117011.1 4175205 R 439843 CDS YP_002117012.1 194733928 complement(4176201..4177532) 1 NC_011094.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4177532 hslU 439843004342 hslU Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent protease ATP-binding subunit HslU YP_002117012.1 4176201 R 439843 CDS YP_002117013.1 194737361 complement(4177542..4178072) 1 NC_011094.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4178072 hslV 439843004343 hslV Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATP-dependent protease peptidase subunit YP_002117013.1 4177542 R 439843 CDS YP_002117014.1 194738123 complement(4178164..4179168) 1 NC_011094.1 identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; cell division protein FtsN 4179168 ftsN 439843004344 ftsN Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein FtsN YP_002117014.1 4178164 R 439843 CDS YP_002117015.1 194736341 complement(4179262..4180287) 1 NC_011094.1 'negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins'; DNA-binding transcriptional regulator CytR 4180287 cytR 439843004345 cytR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator CytR YP_002117015.1 4179262 R 439843 CDS YP_002117016.1 194737086 complement(4180442..4182640) 1 NC_011094.1 'binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity'; primosome assembly protein PriA 4182640 439843004346 SeSA_A4311 Salmonella enterica subsp. enterica serovar Schwarzengrund str. primosome assembly protein PriA YP_002117016.1 4180442 R 439843 CDS YP_002117017.1 194734838 4182844..4183056 1 NC_011094.1 'RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome'; 50S ribosomal protein L31 4183056 rpmE 439843004347 rpmE Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L31 YP_002117017.1 4182844 D 439843 CDS YP_002117018.1 194735881 complement(4183101..4183763) 1 NC_011094.1 identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117; hypothetical protein 4183763 439843004348 SeSA_A4313 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117018.1 4183101 R 439843 CDS YP_002117019.1 194733949 complement(4183964..4185754) 1 NC_011094.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4185754 439843004349 SeSA_A4314 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arylsulfotransferase YP_002117019.1 4183964 R 439843 CDS YP_002117020.1 194737727 4185639..4185800 1 NC_011094.1 identified by glimmer; hypothetical protein 4185800 439843004350 SeSA_A4315 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117020.1 4185639 D 439843 CDS YP_002117021.1 194734925 complement(4186212..4186529) 1 NC_011094.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4186529 metJ 439843004351 metJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional repressor protein MetJ YP_002117021.1 4186212 R 439843 CDS YP_002117022.1 194736514 4186794..4187954 1 NC_011094.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4187954 metB 439843004352 metB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cystathionine gamma-synthase YP_002117022.1 4186794 D 439843 CDS YP_002117023.1 194737573 4187957..4190389 1 NC_011094.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4190389 metL 439843004353 metL Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional aspartate kinase II/homoserine dehydrogenase II YP_002117023.1 4187957 D 439843 CDS YP_002117024.1 194736224 complement(4190628..4190882) 1 NC_011094.1 hypothetical protein 4190882 439843004354 SeSA_A4320 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117024.1 4190628 R 439843 CDS YP_002117025.1 194736163 complement(4191117..4192241) 1 NC_011094.1 hypothetical protein 4192241 439843004355 SeSA_A4321 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117025.1 4191117 R 439843 CDS YP_002117026.1 194735507 4192377..4193933 1 NC_011094.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4193933 439843004356 SeSA_A4322 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5'-nucleotidase YP_002117026.1 4192377 D 439843 CDS YP_002117027.1 194734842 4194128..4195018 1 NC_011094.1 'MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor'; 5,10-methylenetetrahydrofolate reductase 4195018 metF 439843004357 metF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 5,10-methylenetetrahydrofolate reductase YP_002117027.1 4194128 D 439843 CDS YP_002117028.1 194734234 4195183..4197363 1 NC_011094.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4197363 katG 439843004358 katG Salmonella enterica subsp. enterica serovar Schwarzengrund str. catalase/peroxidase HPI YP_002117028.1 4195183 D 439843 CDS YP_002117029.1 194737813 complement(4197470..4198573) 1 NC_011094.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4198573 gldA 439843004359 gldA Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol dehydrogenase YP_002117029.1 4197470 R 439843 CDS YP_002117030.1 194737358 complement(4198585..4199247) 1 NC_011094.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4199247 fsaB 439843004360 fsaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-6-phosphate aldolase YP_002117030.1 4198585 R 439843 CDS YP_002117031.1 194735694 complement(4199502..4200338) 1 NC_011094.1 identified by match to protein family HMM PF00165; transcriptional regulator, AraC family protein 4200338 439843004361 SeSA_A4327 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, AraC family protein YP_002117031.1 4199502 R 439843 CDS YP_002117032.1 194734095 complement(4200499..4202232) 1 NC_011094.1 identified by match to protein family HMM PF00884; hypothetical protein 4202232 439843004362 SeSA_A4328 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117032.1 4200499 R 439843 CDS YP_002117033.1 194737003 complement(4202443..4205094) 1 NC_011094.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4205094 ppc 439843004363 ppc Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoenolpyruvate carboxylase YP_002117033.1 4202443 R 439843 CDS YP_002117034.1 194735342 complement(4205486..4206637) 1 NC_011094.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4206637 argE 439843004364 argE Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetylornithine deacetylase YP_002117034.1 4205486 R 439843 CDS YP_002117035.1 194738244 4206726..4207730 1 NC_011094.1 'catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate'; N-acetyl-gamma-glutamyl-phosphate reductase 4207730 argC 439843004365 argC Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetyl-gamma-glutamyl-phosphate reductase YP_002117035.1 4206726 D 439843 CDS YP_002117036.1 194736635 4207741..4208514 1 NC_011094.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4208514 argB 439843004366 argB Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetylglutamate kinase YP_002117036.1 4207741 D 439843 CDS YP_002117037.1 194735037 4208632..4210008 1 NC_011094.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4210008 argH 439843004367 argH Salmonella enterica subsp. enterica serovar Schwarzengrund str. argininosuccinate lyase YP_002117037.1 4208632 D 439843 CDS YP_002117038.1 194737847 4210292..4211209 1 NC_011094.1 'Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA'; DNA-binding transcriptional regulator OxyR 4211209 oxyR 439843004369 oxyR Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator OxyR YP_002117038.1 4210292 D 439843 CDS YP_002117039.1 194734506 complement(4211192..4212604) 1 NC_011094.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4212604 sthA 439843004370 sthA Salmonella enterica subsp. enterica serovar Schwarzengrund str. soluble pyridine nucleotide transhydrogenase YP_002117039.1 4211192 R 439843 CDS YP_008119812.1 513549431 4212794..4213426 1 NC_011094.1 fatty acid biosynthesis regulator 4213426 fabR 439843004371 fabR Salmonella enterica subsp. enterica serovar Schwarzengrund str. fatty acid biosynthesis regulator YP_008119812.1 4212794 D 439843 CDS YP_002117040.1 194735615 4213442..4213801 1 NC_011094.1 identified by match to protein family HMM PF07226; hypothetical protein 4213801 439843004372 SeSA_A4338 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117040.1 4213442 D 439843 CDS YP_002117041.1 194737076 complement(4213848..4214948) 1 NC_011094.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4214948 trmA 439843004373 trmA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA (uracil-5-)-methyltransferase YP_002117041.1 4213848 R 439843 CDS YP_002117042.1 194736845 4215322..4217166 1 NC_011094.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4217166 btuB 439843004374 btuB Salmonella enterica subsp. enterica serovar Schwarzengrund str. vitamin B12/cobalamin outer membrane transporter YP_002117042.1 4215322 D 439843 CDS YP_002117043.2 449306337 4217111..4217962 1 NC_011094.1 'converts L-glutamate to D-glutamate, a component of peptidoglycan'; glutamate racemase 4217962 murI 439843004375 murI Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate racemase YP_002117043.2 4217111 D 439843 CDS YP_002117044.1 194738097 4222235..4222354 1 NC_011094.1 hypothetical protein 4222354 439843004379 SeSA_A4346 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117044.1 4222235 D 439843 CDS YP_002117045.1 194737386 4224000..4225028 1 NC_011094.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4225028 murB 439843004381 murB Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylenolpyruvoylglucosamine reductase YP_002117045.1 4224000 D 439843 CDS YP_002117046.1 194734870 4225025..4225987 1 NC_011094.1 'catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon'; biotin--protein ligase 4225987 439843004382 SeSA_A4349 Salmonella enterica subsp. enterica serovar Schwarzengrund str. biotin--protein ligase YP_002117046.1 4225025 D 439843 CDS YP_002117047.1 194734226 complement(4226022..4226972) 1 NC_011094.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4226972 coaA 439843004383 coaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. pantothenate kinase YP_002117047.1 4226022 R 439843 CDS YP_002117048.1 194736920 4227557..4227673 1 NC_011094.1 hypothetical protein 4227673 439843004386 SeSA_A4353 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117048.1 4227557 D 439843 CDS YP_002117049.1 194736428 4227931..4229115 1 NC_011094.1 'EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu'; elongation factor Tu 4229115 tuf1 439843004389 tuf1 Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor Tu YP_002117049.1 4227931 D 439843 CDS YP_002117050.1 194735761 4229345..4229728 1 NC_011094.1 'forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force'; preprotein translocase subunit SecE 4229728 secE 439843004390 secE Salmonella enterica subsp. enterica serovar Schwarzengrund str. preprotein translocase subunit SecE YP_002117050.1 4229345 D 439843 CDS YP_002117051.1 194735416 4229730..4230275 1 NC_011094.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4230275 nusG 439843004391 nusG Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcription antitermination protein NusG YP_002117051.1 4229730 D 439843 CDS YP_002117052.1 194734746 4230433..4230861 1 NC_011094.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4230861 rplK 439843004392 rplK Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L11 YP_002117052.1 4230433 D 439843 CDS YP_002117053.1 194736543 4230865..4231569 1 NC_011094.1 'in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA'; 50S ribosomal protein L1 4231569 rplA 439843004393 rplA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L1 YP_002117053.1 4230865 D 439843 CDS YP_002117054.1 194738328 4231985..4232482 1 NC_011094.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4232482 rplJ 439843004394 rplJ Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L10 YP_002117054.1 4231985 D 439843 CDS YP_002117055.1 194735282 4232549..4232914 1 NC_011094.1 'present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors'; 50S ribosomal protein L7/L12 4232914 rplL 439843004395 rplL Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L7/L12 YP_002117055.1 4232549 D 439843 CDS YP_002117056.1 194737028 4233232..4237260 1 NC_011094.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4237260 rpoB 439843004397 rpoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-directed RNA polymerase subunit beta YP_002117056.1 4233232 D 439843 CDS YP_002117057.1 194733939 4237337..4241560 1 NC_011094.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4241560 rpoC 439843004398 rpoC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-directed RNA polymerase subunit beta' YP_002117057.1 4237337 D 439843 CDS YP_002117058.1 194734651 4241647..4241928 1 NC_011094.1 hypothetical protein 4241928 439843004399 SeSA_A4366 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117058.1 4241647 D 439843 CDS YP_002117059.1 194738386 complement(4242594..4242722) 1 NC_011094.1 integrase, catalytic region 4242722 439843004401 SeSA_A4368 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integrase, catalytic region YP_002117059.1 4242594 R 439843 CDS YP_002117060.1 194737225 complement(4243024..4244157) 1 NC_011094.1 'in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center'; thiamine biosynthesis protein ThiH 4244157 thiH 439843004402 thiH Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine biosynthesis protein ThiH YP_002117060.1 4243024 R 439843 CDS YP_002117061.1 194735339 complement(4244154..4244924) 1 NC_011094.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4244924 thiG 439843004403 thiG Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiazole synthase YP_002117061.1 4244154 R 439843 CDS YP_002117062.1 194737963 complement(4244926..4245126) 1 NC_011094.1 'with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate'; sulfur carrier protein ThiS 4245126 thiS 439843004404 thiS Salmonella enterica subsp. enterica serovar Schwarzengrund str. sulfur carrier protein ThiS YP_002117062.1 4244926 R 439843 CDS YP_002117063.1 194736596 complement(4245107..4245865) 1 NC_011094.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; adenylyltransferase 4245865 439843004405 SeSA_A4372 Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylyltransferase YP_002117063.1 4245107 R 439843 CDS YP_002117064.1 194733947 complement(4245858..4246493) 1 NC_011094.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4246493 thiE 439843004406 thiE Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine-phosphate pyrophosphorylase YP_002117064.1 4245858 R 439843 CDS YP_002117065.1 194734581 complement(4246493..4248388) 1 NC_011094.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4248388 thiC 439843004407 thiC Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiamine biosynthesis protein ThiC YP_002117065.1 4246493 R 439843 CDS YP_002117066.1 194736012 complement(4248752..4249240) 1 NC_011094.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4249240 439843004408 SeSA_A4376 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anti-RNA polymerase sigma 70 factor YP_002117066.1 4248752 R 439843 CDS YP_002117067.1 194735127 4249333..4250106 1 NC_011094.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4250106 nudC 439843004409 nudC Salmonella enterica subsp. enterica serovar Schwarzengrund str. NADH pyrophosphatase YP_002117067.1 4249333 D 439843 CDS YP_002117068.1 194737614 4250147..4251211 1 NC_011094.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4251211 hemE 439843004410 hemE Salmonella enterica subsp. enterica serovar Schwarzengrund str. uroporphyrinogen decarboxylase YP_002117068.1 4250147 D 439843 CDS YP_002117069.1 194735033 4251221..4251892 1 NC_011094.1 'Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures'; endonuclease V 4251892 nfi 439843004411 nfi Salmonella enterica subsp. enterica serovar Schwarzengrund str. endonuclease V YP_002117069.1 4251221 D 439843 CDS YP_002117070.1 194738015 4251934..4252524 1 NC_011094.1 identified by match to protein family HMM PF04222; hypothetical protein 4252524 439843004412 SeSA_A4380 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117070.1 4251934 D 439843 CDS YP_002117071.1 194737577 4252711..4252983 1 NC_011094.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4252983 hupA 439843004413 hupA Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator HU subunit alpha YP_002117071.1 4252711 D 439843 CDS YP_002117072.1 194734888 4252995..4253687 1 NC_011094.1 identified by match to protein family HMM PF07356; hypothetical protein 4253687 439843004414 SeSA_A4382 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117072.1 4252995 D 439843 CDS YP_002117073.1 194735704 complement(4253729..4254184) 1 NC_011094.1 zinc resistance protein 4254184 zraP 439843004415 zraP Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc resistance protein YP_002117073.1 4253729 R 439843 CDS YP_002117074.1 194737287 4254438..4255835 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4255835 439843004416 SeSA_A4384 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein ZraS YP_002117074.1 4254438 D 439843 CDS YP_002117075.1 194736973 4255841..4257166 1 NC_011094.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4257166 439843004417 SeSA_A4385 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulatory protein ZraR YP_002117075.1 4255841 D 439843 CDS YP_002117076.1 194734737 complement(4257163..4258452) 1 NC_011094.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4258452 purD 439843004418 purD Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoribosylamine--glycine ligase YP_002117076.1 4257163 R 439843 CDS YP_002117077.1 194738357 complement(4258468..4260057) 1 NC_011094.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4260057 purH 439843004419 purH Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002117077.1 4258468 R 439843 CDS YP_002117078.1 194737721 4264405..4264524 1 NC_011094.1 hypothetical protein 4264524 439843004422 SeSA_A4390 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117078.1 4264405 D 439843 CDS YP_002117079.1 194737125 complement(4266219..4266656) 1 NC_011094.1 identified by match to protein family HMM PF00583; hypothetical protein 4266656 439843004424 SeSA_A4392 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117079.1 4266219 R 439843 CDS YP_002117080.1 194737138 4266813..4267742 1 NC_011094.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4267742 metA 439843004425 metA Salmonella enterica subsp. enterica serovar Schwarzengrund str. homoserine O-succinyltransferase YP_002117080.1 4266813 D 439843 CDS YP_002117081.1 194736609 4268008..4269612 1 NC_011094.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4269612 aceB 439843004426 aceB Salmonella enterica subsp. enterica serovar Schwarzengrund str. malate synthase YP_002117081.1 4268008 D 439843 CDS YP_002117082.1 194736131 4269644..4270948 1 NC_011094.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4270948 aceA 439843004427 aceA Salmonella enterica subsp. enterica serovar Schwarzengrund str. isocitrate lyase YP_002117082.1 4269644 D 439843 CDS YP_002117083.1 194735146 4270952..4271074 1 NC_011094.1 hypothetical protein 4271074 439843004428 SeSA_A4396 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117083.1 4270952 D 439843 CDS YP_002117084.1 194737989 4271050..4272801 1 NC_011094.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4272801 aceK 439843004429 aceK Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional isocitrate dehydrogenase kinase/phosphatase YP_002117084.1 4271050 D 439843 CDS YP_002117085.1 194733991 complement(4272765..4273199) 1 NC_011094.1 identified by match to protein family HMM PF04266; hypothetical protein 4273199 439843004430 SeSA_A4398 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117085.1 4272765 R 439843 CDS YP_002117086.1 194737565 complement(4273183..4274007) 1 NC_011094.1 'regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase'; IclR family transcriptional regulator 4274007 439843004431 SeSA_A4399 Salmonella enterica subsp. enterica serovar Schwarzengrund str. IclR family transcriptional regulator YP_002117086.1 4273183 R 439843 CDS YP_002117087.1 194738290 complement(4274131..4274265) 1 NC_011094.1 identified by glimmer; hypothetical protein 4274265 439843004432 SeSA_A4400 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117087.1 4274131 R 439843 CDS YP_002117088.1 194737162 4274314..4277997 1 NC_011094.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4277997 metH 439843004433 metH Salmonella enterica subsp. enterica serovar Schwarzengrund str. B12-dependent methionine synthase YP_002117088.1 4274314 D 439843 CDS YP_002117089.1 194736679 4278264..4279895 1 NC_011094.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4279895 439843004434 SeSA_A4402 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sodium-dependent inorganic phosphate YP_002117089.1 4278264 D 439843 CDS YP_002117090.1 194736323 complement(4279971..4280660) 1 NC_011094.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4280660 439843004435 SeSA_A4403 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase E YP_002117090.1 4279971 R 439843 CDS YP_002117091.1 194735823 4280868..4281407 1 NC_011094.1 nucleoprotein/polynucleotide-associated enzyme 4281407 439843004436 SeSA_A4404 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleoprotein/polynucleotide-associated enzyme YP_002117091.1 4280868 D 439843 CDS YP_002117092.1 194735254 4281454..4282323 1 NC_011094.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4282323 439843004437 SeSA_A4405 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA pseudouridine synthase F YP_002117092.1 4281454 D 439843 CDS YP_002117093.1 194735926 complement(4282320..4282592) 1 NC_011094.1 hypothetical protein 4282592 439843004438 SeSA_A4406 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117093.1 4282320 R 439843 CDS YP_002117094.1 194735012 complement(4282803..4283561) 1 NC_011094.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family regulatory protein 4283561 439843004439 SeSA_A4407 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DeoR family regulatory protein YP_002117094.1 4282803 R 439843 CDS YP_002117095.1 194734278 complement(4283548..4284411) 1 NC_011094.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 4284411 439843004440 SeSA_A4408 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117095.1 4283548 R 439843 CDS YP_002117096.1 194737853 complement(4284428..4285267) 1 NC_011094.1 hypothetical protein 4285267 439843004441 SeSA_A4409 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117096.1 4284428 R 439843 CDS YP_002117097.1 194738221 complement(4285291..4286880) 1 NC_011094.1 hypothetical protein 4286880 439843004442 SeSA_A4410 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117097.1 4285291 R 439843 CDS YP_002117098.1 194736294 complement(4287258..4288607) 1 NC_011094.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 4288607 lysC 439843004443 lysC Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate kinase YP_002117098.1 4287258 R 439843 CDS YP_002117099.1 194737197 4288995..4290644 1 NC_011094.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4290644 pgi 439843004444 pgi Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucose-6-phosphate isomerase YP_002117099.1 4288995 D 439843 CDS YP_002117100.1 194735827 4291085..4291330 1 NC_011094.1 hypothetical protein 4291330 439843004445 SeSA_A4413 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117100.1 4291085 D 439843 CDS YP_002117101.1 194734126 4291394..4292032 1 NC_011094.1 hypothetical protein 4292032 439843004446 SeSA_A4414 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117101.1 4291394 D 439843 CDS YP_002117102.1 194737601 4292029..4292766 1 NC_011094.1 identified by match to protein family HMM PF06251; hypothetical protein 4292766 439843004447 SeSA_A4415 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117102.1 4292029 D 439843 CDS YP_002117103.1 194737541 4292766..4294862 1 NC_011094.1 identified by match to protein family HMM PF06082; lipoprotein 4294862 439843004448 SeSA_A4416 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002117103.1 4292766 D 439843 CDS YP_002117104.1 194738308 4295005..4295415 1 NC_011094.1 identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4295415 439843004449 SeSA_A4417 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphate-starvation-inducible protein PsiE YP_002117104.1 4295005 D 439843 CDS YP_002117105.1 194736273 complement(4295461..4296936) 1 NC_011094.1 xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter; D-xylose transporter XylE 4296936 xylE 439843004450 xylE Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-xylose transporter XylE YP_002117105.1 4295461 R 439843 CDS YP_002117106.1 194737066 complement(4297256..4298146) 1 NC_011094.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4298146 malG 439843004451 malG Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose transporter permease YP_002117106.1 4297256 R 439843 CDS YP_002117107.1 194737313 complement(4298161..4299705) 1 NC_011094.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4299705 malF 439843004452 malF Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose transporter membrane protein YP_002117107.1 4298161 R 439843 CDS YP_002117108.1 194737658 complement(4299837..4301027) 1 NC_011094.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein 4301027 malE 439843004453 malE Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose ABC transporter substrate-binding protein YP_002117108.1 4299837 R 439843 CDS YP_002117109.1 194738302 4301389..4302498 1 NC_011094.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4302498 malK 439843004454 malK Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose/maltodextrin transporter ATP-binding protein YP_002117109.1 4301389 D 439843 CDS YP_002117110.1 194734083 4302587..4303945 1 NC_011094.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4303945 lamB 439843004455 lamB Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltoporin YP_002117110.1 4302587 D 439843 CDS YP_002117111.1 194734711 4304109..4305026 1 NC_011094.1 identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4305026 malM 439843004456 malM Salmonella enterica subsp. enterica serovar Schwarzengrund str. maltose regulon periplasmic protein YP_002117111.1 4304109 D 439843 CDS YP_002117112.1 194736344 4305207..4305704 1 NC_011094.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4305704 ubiC 439843004457 ubiC Salmonella enterica subsp. enterica serovar Schwarzengrund str. chorismate pyruvate lyase YP_002117112.1 4305207 D 439843 CDS YP_002117113.1 194736960 4305718..4306590 1 NC_011094.1 'catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway'; 4-hydroxybenzoate octaprenyltransferase 4306590 ubiA 439843004458 ubiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. 4-hydroxybenzoate octaprenyltransferase YP_002117113.1 4305718 D 439843 CDS YP_002117114.1 194737294 complement(4306689..4309109) 1 NC_011094.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4309109 439843004459 SeSA_A4427 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glycerol-3-phosphate acyltransferase YP_002117114.1 4306689 R 439843 CDS YP_002117115.1 194737785 4309280..4309648 1 NC_011094.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 4309648 dgkA 439843004460 dgkA Salmonella enterica subsp. enterica serovar Schwarzengrund str. diacylglycerol kinase YP_002117115.1 4309280 D 439843 CDS YP_002117116.1 194738283 4309757..4310365 1 NC_011094.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4310365 lexA 439843004461 lexA Salmonella enterica subsp. enterica serovar Schwarzengrund str. LexA repressor YP_002117116.1 4309757 D 439843 CDS YP_002117117.1 194736298 4310543..4311868 1 NC_011094.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4311868 439843004462 SeSA_A4430 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-damage-inducible SOS response protein YP_002117117.1 4310543 D 439843 CDS YP_002117118.1 194736080 4311850..4311978 1 NC_011094.1 hypothetical protein 4311978 439843004463 SeSA_A4431 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117118.1 4311850 D 439843 CDS YP_002117119.1 194735048 4312000..4312209 1 NC_011094.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4312209 439843004464 SeSA_A4432 Salmonella enterica subsp. enterica serovar Schwarzengrund str. stress-response protein YP_002117119.1 4312000 D 439843 CDS YP_002117120.1 194734694 complement(4312309..4312824) 1 NC_011094.1 'Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB'; zinc uptake transcriptional repressor 4312824 439843004465 SeSA_A4433 Salmonella enterica subsp. enterica serovar Schwarzengrund str. zinc uptake transcriptional repressor YP_002117120.1 4312309 R 439843 CDS YP_002117121.1 194734674 4313071..4314381 1 NC_011094.1 conjugative transfer protein 4314381 439843004466 SeSA_A4434 Salmonella enterica subsp. enterica serovar Schwarzengrund str. conjugative transfer protein YP_002117121.1 4313071 D 439843 CDS YP_002117122.1 194734045 4314690..4315223 1 NC_011094.1 hypothetical protein 4315223 439843004467 SeSA_A4435 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117122.1 4314690 D 439843 CDS YP_002117123.1 194737702 4315417..4315590 1 NC_011094.1 hypothetical protein 4315590 439843004468 SeSA_A4436 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117123.1 4315417 D 439843 CDS YP_002117124.1 194737045 complement(4316061..4316429) 1 NC_011094.1 Eaa2 4316429 439843004469 SeSA_A4437 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Eaa2 YP_002117124.1 4316061 R 439843 CDS YP_002117125.1 194736963 complement(4316426..4316719) 1 NC_011094.1 Gp43 4316719 439843004470 SeSA_A4438 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Gp43 YP_002117125.1 4316426 R 439843 CDS YP_002117126.1 194735069 complement(4316761..4316973) 1 NC_011094.1 hypothetical protein 4316973 439843004471 SeSA_A4439 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117126.1 4316761 R 439843 CDS YP_002117127.1 194735408 complement(4317067..4317768) 1 NC_011094.1 identified by glimmer; hypothetical protein 4317768 439843004472 SeSA_A4440 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117127.1 4317067 R 439843 CDS YP_002117128.1 194734033 complement(4317839..4318378) 1 NC_011094.1 hypothetical protein 4318378 439843004473 SeSA_A4441 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117128.1 4317839 R 439843 CDS YP_002117129.1 194735842 complement(4318515..4319342) 1 NC_011094.1 hypothetical protein 4319342 439843004474 SeSA_A4442 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117129.1 4318515 R 439843 CDS YP_002117130.1 194735218 complement(4319400..4319771) 1 NC_011094.1 hypothetical protein 4319771 439843004475 SeSA_A4443 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117130.1 4319400 R 439843 CDS YP_002117131.1 194737104 4321769..4321969 1 NC_011094.1 hypothetical protein 4321969 439843004476 SeSA_A4444 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117131.1 4321769 D 439843 CDS YP_002117132.1 194736478 4322007..4322558 1 NC_011094.1 hypothetical protein 4322558 439843004477 SeSA_A4445 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117132.1 4322007 D 439843 CDS YP_002117133.1 194738373 4322903..4323844 1 NC_011094.1 phage O protein family protein 4323844 439843004478 SeSA_A4446 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage O protein family protein YP_002117133.1 4322903 D 439843 CDS YP_002117134.1 194737745 4323939..4324592 1 NC_011094.1 identified by match to protein family HMM PF05869; match to protein family HMM TIGR01712; phage N-6-adenine-methyltransferase 4324592 439843004479 SeSA_A4447 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage N-6-adenine-methyltransferase YP_002117134.1 4323939 D 439843 CDS YP_002117135.1 194737048 4324589..4324915 1 NC_011094.1 identified by match to protein family HMM PF01726; lexA DNA binding domain-containing protein 4324915 lexA 439843004480 lexA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lexA DNA binding domain-containing protein YP_002117135.1 4324589 D 439843 CDS YP_002117136.1 194736539 4324912..4325301 1 NC_011094.1 identified by match to protein family HMM PF05866; bacteriophage V crossover junction endodeoxyribonuclease 4325301 439843004481 SeSA_A4449 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage V crossover junction endodeoxyribonuclease YP_002117136.1 4324912 D 439843 CDS YP_002117137.1 194734241 4325321..4326118 1 NC_011094.1 identified by match to protein family HMM PF04383; KilA-N domain family protein 4326118 439843004482 SeSA_A4450 Salmonella enterica subsp. enterica serovar Schwarzengrund str. KilA-N domain family protein YP_002117137.1 4325321 D 439843 CDS YP_002117138.1 194736126 4326126..4327115 1 NC_011094.1 identified by match to protein family HMM PF06914; hypothetical protein 4327115 439843004483 SeSA_A4451 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117138.1 4326126 D 439843 CDS YP_002117139.1 194737741 4327129..4327881 1 NC_011094.1 identified by match to protein family HMM PF03589; antitermination protein 4327881 439843004484 SeSA_A4452 Salmonella enterica subsp. enterica serovar Schwarzengrund str. antitermination protein YP_002117139.1 4327129 D 439843 CDS YP_002117140.1 194737391 complement(4328317..4328430) 1 NC_011094.1 identified by glimmer; hypothetical protein 4328430 439843004485 SeSA_A4453 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117140.1 4328317 R 439843 CDS YP_002117141.1 194736751 4328560..4328748 1 NC_011094.1 identified by glimmer; hypothetical protein 4328748 439843004486 SeSA_A4454 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117141.1 4328560 D 439843 CDS YP_002117142.1 194736388 4328883..4329227 1 NC_011094.1 prophage membrane protein 4329227 439843004487 SeSA_A4455 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prophage membrane protein YP_002117142.1 4328883 D 439843 CDS YP_002117143.1 194735762 4329214..4329495 1 NC_011094.1 identified by match to protein family HMM PF05449; prophage membrane protein 4329495 439843004488 SeSA_A4456 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prophage membrane protein YP_002117143.1 4329214 D 439843 CDS YP_002117144.1 194735401 4329495..4330109 1 NC_011094.1 lytic enzyme 4330109 439843004489 SeSA_A4457 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lytic enzyme YP_002117144.1 4329495 D 439843 CDS YP_002117145.1 194736287 4330106..4330648 1 NC_011094.1 protein gp55 4330648 439843004490 SeSA_A4458 Salmonella enterica subsp. enterica serovar Schwarzengrund str. protein gp55 YP_002117145.1 4330106 D 439843 CDS YP_002117146.1 194737267 4330751..4331254 1 NC_011094.1 hypothetical protein 4331254 439843004491 SeSA_A4459 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117146.1 4330751 D 439843 CDS YP_002117147.1 194738151 4331289..4331666 1 NC_011094.1 Gp74 4331666 439843004492 SeSA_A4460 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Gp74 YP_002117147.1 4331289 D 439843 CDS YP_002117148.1 194737635 4331799..4332263 1 NC_011094.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase, small subunit, P27 family protein 4332263 439843004493 SeSA_A4461 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase, small subunit, P27 family protein YP_002117148.1 4331799 D 439843 CDS YP_002117149.1 194737485 4332283..4333959 1 NC_011094.1 identified by match to protein family HMM PF03354; phage terminase, large subunit 4333959 439843004494 SeSA_A4462 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage terminase, large subunit YP_002117149.1 4332283 D 439843 CDS YP_002117150.1 194734728 4333959..4335263 1 NC_011094.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family protein 4335263 439843004495 SeSA_A4463 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage portal protein, HK97 family protein YP_002117150.1 4333959 D 439843 CDS YP_002117151.1 194734371 4335277..4336125 1 NC_011094.1 identified by match to protein family HMM PF00574; ClpP protease 4336125 439843004496 SeSA_A4464 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ClpP protease YP_002117151.1 4335277 D 439843 CDS YP_002117152.1 194735635 4336135..4337352 1 NC_011094.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family protein 4337352 439843004497 SeSA_A4465 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage major capsid protein, HK97 family protein YP_002117152.1 4336135 D 439843 CDS YP_002117153.1 194735375 4337396..4337665 1 NC_011094.1 hypothetical protein 4337665 439843004498 SeSA_A4466 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117153.1 4337396 D 439843 CDS YP_002117154.1 194737242 4337665..4337988 1 NC_011094.1 phage protein 4337988 439843004499 SeSA_A4467 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage protein YP_002117154.1 4337665 D 439843 CDS YP_002117155.1 194737245 4338000..4338413 1 NC_011094.1 identified by match to protein family HMM TIGR01563; phage head-tail adaptor 4338413 439843004500 SeSA_A4468 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage head-tail adaptor YP_002117155.1 4338000 D 439843 CDS YP_002117156.1 194735333 4338385..4338897 1 NC_011094.1 hypothetical protein 4338897 439843004501 SeSA_A4469 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117156.1 4338385 D 439843 CDS YP_002117157.1 194736812 4338894..4339439 1 NC_011094.1 hypothetical protein 4339439 439843004502 SeSA_A4470 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117157.1 4338894 D 439843 CDS YP_002117158.1 194736220 4339461..4339625 1 NC_011094.1 hypothetical protein 4339625 439843004503 SeSA_A4471 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117158.1 4339461 D 439843 CDS YP_002117159.1 194738083 4339615..4341111 1 NC_011094.1 identified by match to protein family HMM PF06274; bacteriophage Mu tail sheath protein 4341111 439843004504 SeSA_A4472 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu tail sheath protein YP_002117159.1 4339615 D 439843 CDS YP_002117160.1 194737495 4341111..4341467 1 NC_011094.1 tail tube protein 4341467 439843004505 SeSA_A4473 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail tube protein YP_002117160.1 4341111 D 439843 CDS YP_002117161.1 194737696 4341464..4341790 1 NC_011094.1 hypothetical protein 4341790 439843004506 SeSA_A4474 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117161.1 4341464 D 439843 CDS YP_002117162.1 194734652 4341875..4343800 1 NC_011094.1 identified by match to protein family HMM TIGR01760; tail protein 4343800 439843004507 SeSA_A4475 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002117162.1 4341875 D 439843 CDS YP_002117163.1 194734428 4344072..4344266 1 NC_011094.1 hypothetical protein 4344266 439843004508 SeSA_A4476 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117163.1 4344072 D 439843 CDS YP_002117164.1 194735966 4344326..4345666 1 NC_011094.1 identified by match to protein family HMM PF07157; tail/DNA circulation protein 4345666 439843004509 SeSA_A4477 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail/DNA circulation protein YP_002117164.1 4344326 D 439843 CDS YP_002117165.1 194735017 4345663..4346721 1 NC_011094.1 identified by match to protein family HMM PF06893; bacteriophage Mu P protein 4346721 439843004510 SeSA_A4478 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu P protein YP_002117165.1 4345663 D 439843 CDS YP_002117166.1 194734250 4346721..4347254 1 NC_011094.1 identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644; bacteriophage Mu Gp45 protein 4347254 439843004511 SeSA_A4479 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bacteriophage Mu Gp45 protein YP_002117166.1 4346721 D 439843 CDS YP_002117167.1 194736241 4347259..4347672 1 NC_011094.1 identified by match to protein family HMM PF07409; phage protein GP46 4347672 439843004512 SeSA_A4480 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage protein GP46 YP_002117167.1 4347259 D 439843 CDS YP_002117168.1 194736844 4347665..4348744 1 NC_011094.1 identified by match to protein family HMM PF04865; tail protein 4348744 439843004513 SeSA_A4481 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002117168.1 4347665 D 439843 CDS YP_002117169.1 194735543 4348747..4349334 1 NC_011094.1 tail protein 4349334 439843004514 SeSA_A4482 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tail protein YP_002117169.1 4348747 D 439843 CDS YP_002117170.1 194736142 4349321..4350415 1 NC_011094.1 phage tail fiber protein 4350415 439843004515 SeSA_A4483 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage tail fiber protein YP_002117170.1 4349321 D 439843 CDS YP_002117171.1 194736149 4350422..4350829 1 NC_011094.1 identified by match to protein family HMM PF02413; fels-2 prophage Tfa 4350829 439843004516 SeSA_A4484 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fels-2 prophage Tfa YP_002117171.1 4350422 D 439843 CDS YP_002117172.1 194734219 complement(4351026..4351748) 1 NC_011094.1 identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE 4351748 439843004517 SeSA_A4485 Salmonella enterica subsp. enterica serovar Schwarzengrund str. guanine nucleotide exchange factor SopE YP_002117172.1 4351026 R 439843 CDS YP_002117173.1 194734830 4352084..4352221 1 NC_011094.1 identified by glimmer; hypothetical protein 4352221 439843004518 SeSA_A4486 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117173.1 4352084 D 439843 CDS YP_002117174.1 194734225 4352273..4352836 1 NC_011094.1 identified by match to protein family HMM PF02796; DNA-invertase 4352836 439843004519 SeSA_A4488 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-invertase YP_002117174.1 4352273 D 439843 CDS YP_002117175.1 194734866 complement(4352980..4353228) 1 NC_011094.1 identified by match to protein family HMM PF06183; DNA-damage-inducible protein 4353228 439843004520 SeSA_A4489 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-damage-inducible protein YP_002117175.1 4352980 R 439843 CDS YP_002117176.1 194737027 complement(4353290..4354387) 1 NC_011094.1 identified by match to protein family HMM PF00589; phage integrase family protein 4354387 439843004521 SeSA_A4490 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage integrase family protein YP_002117176.1 4353290 R 439843 CDS YP_002117177.1 194736682 4354476..4355513 1 NC_011094.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4355513 439843004522 SeSA_A4491 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-dihydrouridine synthase A YP_002117177.1 4354476 D 439843 CDS YP_008119813.1 513549432 4355681..4355923 1 NC_011094.1 phage shock protein G 4355923 pspG 439843004523 pspG Salmonella enterica subsp. enterica serovar Schwarzengrund str. phage shock protein G YP_008119813.1 4355681 D 439843 CDS YP_002117178.1 194737929 complement(4356098..4357081) 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase, NADPH-dependent 4357081 439843004524 SeSA_A4493 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quinone oxidoreductase, NADPH-dependent YP_002117178.1 4356098 R 439843 CDS YP_002117179.1 194734595 4357146..4358561 1 NC_011094.1 unwinds double stranded DNA; replicative DNA helicase 4358561 dnaB 439843004525 dnaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. replicative DNA helicase YP_002117179.1 4357146 D 439843 CDS YP_002117180.1 194735891 4358593..4359672 1 NC_011094.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4359672 alr 439843004526 alr Salmonella enterica subsp. enterica serovar Schwarzengrund str. alanine racemase YP_002117180.1 4358593 D 439843 CDS YP_002117181.1 194733958 complement(4359629..4359778) 1 NC_011094.1 identified by glimmer; hypothetical protein 4359778 439843004527 SeSA_A4496 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117181.1 4359629 R 439843 CDS YP_002117182.1 194735410 4359858..4361051 1 NC_011094.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4361051 439843004528 SeSA_A4497 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aromatic amino acid aminotransferase YP_002117182.1 4359858 D 439843 CDS YP_002117183.1 194734461 4361238..4361951 1 NC_011094.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4361951 aphA 439843004529 aphA Salmonella enterica subsp. enterica serovar Schwarzengrund str. acid phosphatase/phosphotransferase YP_002117183.1 4361238 D 439843 CDS YP_002117184.1 194734034 4362080..4362496 1 NC_011094.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4362496 439843004530 SeSA_A4499 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117184.1 4362080 D 439843 CDS YP_002117185.1 194735614 4362499..4362855 1 NC_011094.1 identified by match to protein family HMM PF04237; hypothetical protein 4362855 439843004531 SeSA_A4500 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117185.1 4362499 D 439843 CDS YP_002117186.1 194736117 complement(4362856..4363194) 1 NC_011094.1 hypothetical protein 4363194 439843004532 SeSA_A4501 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117186.1 4362856 R 439843 CDS YP_002117187.1 194734194 complement(4363181..4363624) 1 NC_011094.1 hypothetical protein 4363624 439843004533 SeSA_A4502 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117187.1 4363181 R 439843 CDS YP_002117188.1 194734844 complement(4363768..4366593) 1 NC_011094.1 'The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate'; excinuclease ABC subunit A 4366593 uvrA 439843004534 uvrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. excinuclease ABC subunit A YP_002117188.1 4363768 R 439843 CDS YP_002117189.1 194737458 4366841..4367371 1 NC_011094.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4367371 ssb2 439843004535 ssb2 Salmonella enterica subsp. enterica serovar Schwarzengrund str. single-stranded DNA-binding protein YP_002117189.1 4366841 D 439843 CDS YP_002117190.1 194737646 4367519..4367644 1 NC_011094.1 identified by glimmer; hypothetical protein 4367644 439843004536 SeSA_A4505 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117190.1 4367519 D 439843 CDS YP_002117191.1 194736309 4367762..4367902 1 NC_011094.1 identified by glimmer; hypothetical protein 4367902 439843004537 SeSA_A4506 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117191.1 4367762 D 439843 CDS YP_002117192.1 194736778 4368411..4369043 1 NC_011094.1 hypothetical protein 4369043 439843004538 SeSA_A4507 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117192.1 4368411 D 439843 CDS YP_002117193.1 194734208 4369040..4370428 1 NC_011094.1 integral membrane protein 4370428 439843004539 SeSA_A4508 Salmonella enterica subsp. enterica serovar Schwarzengrund str. integral membrane protein YP_002117193.1 4369040 D 439843 CDS YP_002117194.1 194735015 4370811..4371737 1 NC_011094.1 identified by match to protein family HMM PF02321; ABC transporter outer membrane protein 4371737 439843004540 SeSA_A4509 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter outer membrane protein YP_002117194.1 4370811 D 439843 CDS YP_002117195.1 194735425 4373028..4389713 1 NC_011094.1 hypothetical protein 4389713 439843004543 SeSA_A4512 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117195.1 4373028 D 439843 CDS YP_002117196.1 194735935 4389753..4391819 1 NC_011094.1 identified by match to protein family HMM PF00005; type-1 secretion protein 4391819 439843004544 SeSA_A4513 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type-1 secretion protein YP_002117196.1 4389753 D 439843 CDS YP_002117197.1 194736945 4392941..4394542 1 NC_011094.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4394542 439843004545 SeSA_A4515 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002117197.1 4392941 D 439843 CDS YP_002117198.1 194735030 complement(4394530..4394853) 1 NC_011094.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4394853 439843004546 SeSA_A4516 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator SoxS YP_002117198.1 4394530 R 439843 CDS YP_002117199.1 194737432 4394940..4395398 1 NC_011094.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4395398 soxR 439843004547 soxR Salmonella enterica subsp. enterica serovar Schwarzengrund str. redox-sensitive transcriptional activator SoxR YP_002117199.1 4394940 D 439843 CDS YP_002117200.1 194737333 4395691..4396359 1 NC_011094.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 4396359 439843004548 SeSA_A4518 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathione S-transferase, N- domain YP_002117200.1 4395691 D 439843 CDS YP_002117201.1 194736999 complement(4396340..4396561) 1 NC_011094.1 identified by glimmer; hypothetical protein 4396561 439843004549 SeSA_A4519 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117201.1 4396340 R 439843 CDS YP_002117202.1 194735883 4396707..4398056 1 NC_011094.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter sulfate permease (SulP) family protein 4398056 439843004550 SeSA_A4520 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inorganic anion transporter sulfate permease (SulP) family protein YP_002117202.1 4396707 D 439843 CDS YP_002117203.1 194735221 complement(4398049..4398207) 1 NC_011094.1 identified by glimmer; hypothetical protein 4398207 439843004551 SeSA_A4522 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117203.1 4398049 R 439843 CDS YP_002117204.1 194733933 4398206..4399852 1 NC_011094.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4399852 439843004552 SeSA_A4521 Salmonella enterica subsp. enterica serovar Schwarzengrund str. Na+/H+ antiporter YP_002117204.1 4398206 D 439843 CDS YP_002117205.1 194734575 complement(4399947..4400834) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein 4400834 439843004553 SeSA_A4523 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LysR family regulatory protein YP_002117205.1 4399947 R 439843 CDS YP_002117206.2 449306338 4400833..4401348 1 NC_011094.1 identified by match to protein family HMM PF03788; LrgA family protein 4401348 439843004554 SeSA_A4524 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LrgA family protein YP_002117206.2 4400833 D 439843 CDS YP_002117207.1 194737812 4401341..4402030 1 NC_011094.1 identified by match to protein family HMM PF04172; LrgB family protein 4402030 439843004555 SeSA_A4525 Salmonella enterica subsp. enterica serovar Schwarzengrund str. LrgB family protein YP_002117207.1 4401341 D 439843 CDS YP_002117208.1 194735959 complement(4402069..4403718) 1 NC_011094.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4403718 actP 439843004556 actP Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetate permease YP_002117208.1 4402069 R 439843 CDS YP_002117209.1 194736577 complement(4403715..4404029) 1 NC_011094.1 identified by match to protein family HMM PF04341; hypothetical protein 4404029 439843004557 SeSA_A4527 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117209.1 4403715 R 439843 CDS YP_002117210.1 194736112 complement(4404269..4406227) 1 NC_011094.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4406227 acsA 439843004558 acsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyl-CoA synthetase YP_002117210.1 4404269 R 439843 CDS YP_002117211.1 194736605 4406659..4408095 1 NC_011094.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4408095 nrfA 439843004559 nrfA Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c552 YP_002117211.1 4406659 D 439843 CDS YP_002117212.1 194734701 4408207..4408773 1 NC_011094.1 'part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia'; cytochrome c nitrite reductase pentaheme subunit 4408773 nrfB 439843004560 nrfB Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c nitrite reductase pentaheme subunit YP_002117212.1 4408207 D 439843 CDS YP_002117213.1 194734388 4408770..4409441 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase, Fe-S protein 4409441 nrfC 439843004561 nrfC Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c nitrite reductase, Fe-S protein YP_002117213.1 4408770 D 439843 CDS YP_002117214.1 194735175 4409438..4410394 1 NC_011094.1 identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase, NrfD subunit 4410394 nrfD 439843004562 nrfD Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytochrome c nitrite reductase, NrfD subunit YP_002117214.1 4409438 D 439843 CDS YP_002117215.1 194735440 4410387..4412123 1 NC_011094.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4412123 ccmF 439843004563 ccmF Salmonella enterica subsp. enterica serovar Schwarzengrund str. heme lyase subunit NrfE YP_002117215.1 4410387 D 439843 CDS YP_002117216.1 194737153 4412116..4412625 1 NC_011094.1 identified by match to protein family HMM PF03918; match to protein family HMM TIGR03147; formate-dependent nitrite reductase complex subunit NrfF 4412625 439843004564 SeSA_A4534 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate-dependent nitrite reductase complex subunit NrfF YP_002117216.1 4412116 D 439843 CDS YP_002117217.1 194738127 4412622..4413242 1 NC_011094.1 identified by match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4413242 439843004565 SeSA_A4535 Salmonella enterica subsp. enterica serovar Schwarzengrund str. formate-dependent nitrite reductase complex subunit NrfG YP_002117217.1 4412622 D 439843 CDS YP_002117218.1 194737660 complement(4413382..4413510) 1 NC_011094.1 hypothetical protein 4413510 439843004566 SeSA_A4536 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117218.1 4413382 R 439843 CDS YP_002117219.1 194734663 4413587..4414897 1 NC_011094.1 'carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system'; glutamate/aspartate:proton symporter 4414897 gltP 439843004567 gltP Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutamate/aspartate:proton symporter YP_002117219.1 4413587 D 439843 CDS YP_002117220.1 194734116 complement(4415055..4415744) 1 NC_011094.1 identified by match to protein family HMM PF08238; hypothetical protein 4415744 439843004568 SeSA_A4538 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117220.1 4415055 R 439843 CDS YP_002117221.1 194738231 complement(4418440..4419348) 1 NC_011094.1 identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase 4419348 439843004570 SeSA_A4541 Salmonella enterica subsp. enterica serovar Schwarzengrund str. membrane-bound beta-hydroxylase YP_002117221.1 4418440 R 439843 CDS YP_002117222.1 194736472 complement(4419606..4420040) 1 NC_011094.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4420040 439843004571 SeSA_A4542 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aminoalkylphosphonic acid N-acetyltransferase YP_002117222.1 4419606 R 439843 CDS YP_002117223.1 194735326 complement(4420192..4420635) 1 NC_011094.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein 4420635 439843004572 SeSA_A4543 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117223.1 4420192 R 439843 CDS YP_002117224.1 194735822 complement(4420755..4421090) 1 NC_011094.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein 4421090 phnA 439843004573 phnA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117224.1 4420755 R 439843 CDS YP_002117225.1 194735683 4421558..4423060 1 NC_011094.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883; proline/glycine betaine transporter 4423060 439843004574 SeSA_A4545 Salmonella enterica subsp. enterica serovar Schwarzengrund str. proline/glycine betaine transporter YP_002117225.1 4421558 D 439843 CDS YP_002117226.1 194733917 complement(4423227..4424306) 1 NC_011094.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB 4424306 439843004575 SeSA_A4546 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensor protein BasS/PmrB YP_002117226.1 4423227 R 439843 CDS YP_002117227.1 194734993 complement(4424307..4424975) 1 NC_011094.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4424975 439843004576 SeSA_A4547 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator BasR YP_002117227.1 4424307 R 439843 CDS YP_002117228.1 194737369 complement(4424972..4426615) 1 NC_011094.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein 4426615 439843004577 SeSA_A4548 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cell division protein YP_002117228.1 4424972 R 439843 CDS YP_002117229.1 194736542 complement(4426749..4428086) 1 NC_011094.1 identified by match to protein family HMM PF00324; arginine:agmatin antiporter 4428086 439843004578 SeSA_A4549 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine:agmatin antiporter YP_002117229.1 4426749 R 439843 CDS YP_002117230.1 194737377 complement(4428226..4428957) 1 NC_011094.1 identified by match to protein family HMM PF00165; porin 4428957 439843004579 SeSA_A4550 Salmonella enterica subsp. enterica serovar Schwarzengrund str. porin YP_002117230.1 4428226 R 439843 CDS YP_002117231.1 194735658 complement(4429285..4431555) 1 NC_011094.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase 4431555 adiA 439843004580 adiA Salmonella enterica subsp. enterica serovar Schwarzengrund str. biodegradative arginine decarboxylase YP_002117231.1 4429285 R 439843 CDS YP_002117232.1 194735145 complement(4431785..4432675) 1 NC_011094.1 identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR 4432675 439843004581 SeSA_A4552 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator MelR YP_002117232.1 4431785 R 439843 CDS YP_002117233.1 194734705 4432986..4434341 1 NC_011094.1 identified by match to protein family HMM PF02056; alpha-galactosidase 4434341 439843004582 SeSA_A4553 Salmonella enterica subsp. enterica serovar Schwarzengrund str. alpha-galactosidase YP_002117233.1 4432986 D 439843 CDS YP_002117234.1 194734070 4434425..4435855 1 NC_011094.1 identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4435855 439843004583 SeSA_A4554 Salmonella enterica subsp. enterica serovar Schwarzengrund str. melibiose:sodium symporter YP_002117234.1 4434425 D 439843 CDS YP_002117235.1 194734207 complement(4435944..4437590) 1 NC_011094.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 4437590 439843004584 SeSA_A4555 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate hydratase class I, anaerobic YP_002117235.1 4435944 R 439843 CDS YP_002117236.1 194738234 complement(4437686..4439026) 1 NC_011094.1 'functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters'; anaerobic C4-dicarboxylate transporter 4439026 439843004585 SeSA_A4556 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic C4-dicarboxylate transporter YP_002117236.1 4437686 R 439843 CDS YP_002117237.1 194737422 complement(4439173..4439439) 1 NC_011094.1 hypothetical protein 4439439 439843004586 SeSA_A4557 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117237.1 4439173 R 439843 CDS YP_002117238.1 194737202 complement(4439756..4440475) 1 NC_011094.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4440475 439843004587 SeSA_A4558 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator DcuR YP_002117238.1 4439756 R 439843 CDS YP_002117239.1 194734757 complement(4440472..4442103) 1 NC_011094.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4442103 439843004588 SeSA_A4559 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensory histidine kinase DcuS YP_002117239.1 4440472 R 439843 CDS YP_002117240.1 194737767 4442478..4444907 1 NC_011094.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase subunit A 4444907 439843004589 SeSA_A4560 Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic dimethyl sulfoxide reductase subunit A YP_002117240.1 4442478 D 439843 CDS YP_002117241.1 194736806 4444921..4445547 1 NC_011094.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase subunit B 4445547 dmsB 439843004590 dmsB Salmonella enterica subsp. enterica serovar Schwarzengrund str. dimethylsulfoxide reductase subunit B YP_002117241.1 4444921 D 439843 CDS YP_002117242.1 194736181 4445540..4446313 1 NC_011094.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4446313 dmsC 439843004591 dmsC Salmonella enterica subsp. enterica serovar Schwarzengrund str. dmso reductase anchor subunit YP_002117242.1 4445540 D 439843 CDS YP_007443076.1 449306339 4446329..4446982 1 NC_011094.1 oxidoreductase 4446982 439843004592 SeSA_A4563 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oxidoreductase YP_007443076.1 4446329 D 439843 CDS YP_002117243.1 194736039 complement(4447066..4448466) 1 NC_011094.1 identified by match to protein family HMM PF09362; hypothetical protein 4448466 439843004593 SeSA_A4564 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117243.1 4447066 R 439843 CDS YP_002117244.1 194734044 4448492..4448605 1 NC_011094.1 identified by glimmer; hypothetical protein 4448605 439843004594 SeSA_A4565 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117244.1 4448492 D 439843 CDS YP_002117245.1 194734749 4448770..4449675 1 NC_011094.1 identified by match to protein family HMM PF06977; hypothetical protein 4449675 439843004595 SeSA_A4566 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117245.1 4448770 D 439843 CDS YP_002117246.1 194736311 4450333..4450515 1 NC_011094.1 identified by glimmer; hypothetical protein 4450515 439843004597 SeSA_A4568 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117246.1 4450333 D 439843 CDS YP_002117247.1 194737413 complement(4450508..4450780) 1 NC_011094.1 identified by match to protein family HMM PF00196; GerE family regulatory protein 4450780 439843004598 SeSA_A4569 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GerE family regulatory protein YP_002117247.1 4450508 R 439843 CDS YP_002117248.1 194737340 complement(4450792..4451667) 1 NC_011094.1 identified by match to protein family HMM PF00165; araC family transcriptional regulator 4451667 439843004599 SeSA_A4570 Salmonella enterica subsp. enterica serovar Schwarzengrund str. araC family transcriptional regulator YP_002117248.1 4450792 R 439843 CDS YP_002117249.1 194734358 4451804..4451929 1 NC_011094.1 identified by glimmer; hypothetical protein 4451929 439843004600 SeSA_A4571 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117249.1 4451804 D 439843 CDS YP_002117250.1 194735006 4452470..4452763 1 NC_011094.1 identified by match to protein family HMM PF08681; hypothetical protein 4452763 439843004601 SeSA_A4572 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117250.1 4452470 D 439843 CDS YP_002117251.1 194735470 4452760..4453251 1 NC_011094.1 identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 4453251 439843004602 SeSA_A4573 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase, gnat family protein YP_002117251.1 4452760 D 439843 CDS YP_002117252.1 194736043 complement(4453994..4454221) 1 NC_011094.1 identified by glimmer; hypothetical protein 4454221 439843004604 SeSA_A4575 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117252.1 4453994 R 439843 CDS YP_002117253.1 194736934 4454560..4454691 1 NC_011094.1 identified by glimmer; hypothetical protein 4454691 439843004605 SeSA_A4576 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117253.1 4454560 D 439843 CDS YP_002117254.1 194737547 4454804..4455094 1 NC_011094.1 identified by match to protein family HMM PF03333; PefB 4455094 439843004606 SeSA_A4577 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PefB YP_002117254.1 4454804 D 439843 CDS YP_002117255.1 194737884 4455129..4455668 1 NC_011094.1 identified by match to protein family HMM PF00419; K88 fimbrial protein A 4455668 439843004607 SeSA_A4578 Salmonella enterica subsp. enterica serovar Schwarzengrund str. K88 fimbrial protein A YP_002117255.1 4455129 D 439843 CDS YP_002117256.1 194733941 4455678..4458116 1 NC_011094.1 identified by match to protein family HMM PF00577; CshB porin 4458116 439843004608 SeSA_A4579 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CshB porin YP_002117256.1 4455678 D 439843 CDS YP_002117257.1 194736277 4458133..4458930 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein ClpE 4458930 439843004609 SeSA_A4580 Salmonella enterica subsp. enterica serovar Schwarzengrund str. chaperone protein ClpE YP_002117257.1 4458133 D 439843 CDS YP_002117258.1 194736758 4458963..4459457 1 NC_011094.1 K88 minor fimbrial protein FaeF 4459457 439843004610 SeSA_A4581 Salmonella enterica subsp. enterica serovar Schwarzengrund str. K88 minor fimbrial protein FaeF YP_002117258.1 4458963 D 439843 CDS YP_002117259.1 194736364 4459680..4460462 1 NC_011094.1 CshE pilin 4460462 439843004611 SeSA_A4582 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CshE pilin YP_002117259.1 4459680 D 439843 CDS YP_002117260.1 194738281 4460696..4461493 1 NC_011094.1 identified by match to protein family HMM PF02432; minor fimbrial protein 4461493 439843004612 SeSA_A4583 Salmonella enterica subsp. enterica serovar Schwarzengrund str. minor fimbrial protein YP_002117260.1 4460696 D 439843 CDS YP_002117261.1 194737299 4461521..4462285 1 NC_011094.1 identified by match to protein family HMM PF02432; minor fimbrial protein 4462285 439843004613 SeSA_A4584 Salmonella enterica subsp. enterica serovar Schwarzengrund str. minor fimbrial protein YP_002117261.1 4461521 D 439843 CDS YP_002117262.1 194735034 4462707..4463291 1 NC_011094.1 hypothetical protein 4463291 439843004614 SeSA_A4585 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117262.1 4462707 D 439843 CDS YP_002117263.1 194734360 4463364..4463576 1 NC_011094.1 identified by match to protein family HMM PF04703; hypothetical protein 4463576 439843004615 SeSA_A4586 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117263.1 4463364 D 439843 CDS YP_002117264.1 194736031 4463853..4463999 1 NC_011094.1 identified by glimmer; hypothetical protein 4463999 439843004616 SeSA_A4587 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117264.1 4463853 D 439843 CDS YP_002117265.1 194735409 4464025..4464873 1 NC_011094.1 identified by match to protein family HMM PF06977; SrgB 4464873 439843004617 SeSA_A4588 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SrgB YP_002117265.1 4464025 D 439843 CDS YP_002117266.1 194734326 complement(4465005..4465757) 1 NC_011094.1 identified by match to protein family HMM PF01569; acid phosphatase 4465757 439843004618 SeSA_A4589 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acid phosphatase YP_002117266.1 4465005 R 439843 CDS YP_002117267.1 194737827 4465813..4465992 1 NC_011094.1 identified by glimmer; hypothetical protein 4465992 439843004619 SeSA_A4590 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117267.1 4465813 D 439843 CDS YP_002117268.1 194738081 complement(4466658..4467233) 1 NC_011094.1 identified by match to protein family HMM PF00440; transcriptional regulator 4467233 439843004621 SeSA_A4592 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002117268.1 4466658 R 439843 CDS YP_002117269.1 194737290 complement(4467270..4468973) 1 NC_011094.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4468973 dipZ 439843004622 dipZ Salmonella enterica subsp. enterica serovar Schwarzengrund str. thiol:disulfide interchange protein YP_002117269.1 4467270 R 439843 CDS YP_002117270.1 194734784 complement(4468949..4469296) 1 NC_011094.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4469296 cutA 439843004623 cutA Salmonella enterica subsp. enterica serovar Schwarzengrund str. divalent-cation tolerance protein CutA YP_002117270.1 4468949 R 439843 CDS YP_002117271.1 194734295 complement(4469417..4470718) 1 NC_011094.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4470718 dcuA 439843004624 dcuA Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic C4-dicarboxylate transporter YP_002117271.1 4469417 R 439843 CDS YP_002117272.1 194736630 complement(4470833..4472269) 1 NC_011094.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4472269 aspA 439843004625 aspA Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate ammonia-lyase YP_002117272.1 4470833 R 439843 CDS YP_002117273.1 194736165 4472610..4473086 1 NC_011094.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4473086 fxsA 439843004626 fxsA Salmonella enterica subsp. enterica serovar Schwarzengrund str. FxsA protein YP_002117273.1 4472610 D 439843 CDS YP_002117274.1 194736763 complement(4473145..4474407) 1 NC_011094.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 4474407 439843004627 SeSA_A4598 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117274.1 4473145 R 439843 CDS YP_002117275.1 194737155 4474662..4474955 1 NC_011094.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4474955 groES 439843004628 groES Salmonella enterica subsp. enterica serovar Schwarzengrund str. co-chaperonin GroES YP_002117275.1 4474662 D 439843 CDS YP_002117276.1 194735124 4474999..4476645 1 NC_011094.1 '60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth'; molecular chaperone GroEL 4476645 groEL 439843004629 groEL Salmonella enterica subsp. enterica serovar Schwarzengrund str. molecular chaperone GroEL YP_002117276.1 4474999 D 439843 CDS YP_002117277.1 194735501 4476889..4477242 1 NC_011094.1 lipoprotein 4477242 439843004630 SeSA_A4601 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoprotein YP_002117277.1 4476889 D 439843 CDS YP_002117278.1 194738285 complement(4477290..4478147) 1 NC_011094.1 hypothetical protein 4478147 439843004631 SeSA_A4602 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117278.1 4477290 R 439843 CDS YP_002117279.1 194737300 complement(4478429..4479457) 1 NC_011094.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein 4479457 439843004632 SeSA_A4603 Salmonella enterica subsp. enterica serovar Schwarzengrund str. KamA family protein YP_002117279.1 4478429 R 439843 CDS YP_002117280.1 194734529 4479498..4480064 1 NC_011094.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4480064 efp 439843004633 efp Salmonella enterica subsp. enterica serovar Schwarzengrund str. elongation factor P YP_002117280.1 4479498 D 439843 CDS YP_002117281.1 194734052 4480086..4480259 1 NC_011094.1 identified by match to protein family HMM PF08085; entericidin A 4480259 439843004634 SeSA_A4605 Salmonella enterica subsp. enterica serovar Schwarzengrund str. entericidin A YP_002117281.1 4480086 D 439843 CDS YP_002117282.1 194735903 complement(4480544..4481188) 1 NC_011094.1 identified by match to protein family HMM PF00196; transcriptional regulator 4481188 439843004635 SeSA_A4606 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator YP_002117282.1 4480544 R 439843 CDS YP_008119814.1 513549433 4481387..4481704 1 NC_011094.1 quaternary ammonium compound-resistance protein SugE 4481704 439843004636 SeSA_A4608 Salmonella enterica subsp. enterica serovar Schwarzengrund str. quaternary ammonium compound-resistance protein SugE YP_008119814.1 4481387 D 439843 CDS YP_002117284.1 194736049 complement(4481721..4482254) 1 NC_011094.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4482254 439843004637 SeSA_A4609 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane lipoprotein Blc YP_002117284.1 4481721 R 439843 CDS YP_002117285.1 194734281 complement(4482365..4482724) 1 NC_011094.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4482724 439843004638 SeSA_A4610 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate reductase subunit D YP_002117285.1 4482365 R 439843 CDS YP_002117286.1 194735742 complement(4482735..4483130) 1 NC_011094.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase subunit C 4483130 frdC 439843004639 frdC Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate reductase subunit C YP_002117286.1 4482735 R 439843 CDS YP_002117287.1 194735068 complement(4483141..4483875) 1 NC_011094.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase iron-sulfur subunit 4483875 frdB 439843004640 frdB Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate reductase iron-sulfur subunit YP_002117287.1 4483141 R 439843 CDS YP_002117288.1 194735703 complement(4483868..4485658) 1 NC_011094.1 'part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB'; fumarate reductase flavoprotein subunit 4485658 frdA 439843004641 frdA Salmonella enterica subsp. enterica serovar Schwarzengrund str. fumarate reductase flavoprotein subunit YP_002117288.1 4483868 R 439843 CDS YP_002117289.1 194738327 4485981..4486958 1 NC_011094.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4486958 439843004642 SeSA_A4614 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lysyl-tRNA synthetase YP_002117289.1 4485981 D 439843 CDS YP_002117290.1 194736728 4487184..4488686 1 NC_011094.1 identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4488686 439843004643 SeSA_A4615 Salmonella enterica subsp. enterica serovar Schwarzengrund str. inner membrane transporter YjeM YP_002117290.1 4487184 D 439843 CDS YP_002117291.1 194734787 complement(4488748..4492074) 1 NC_011094.1 identified by match to protein family HMM PF00924; hypothetical protein 4492074 439843004644 SeSA_A4616 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117291.1 4488748 R 439843 CDS YP_002117292.1 194737467 complement(4492093..4493061) 1 NC_011094.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4493061 psd 439843004645 psd Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphatidylserine decarboxylase YP_002117292.1 4492093 R 439843 CDS YP_002117293.1 194735865 complement(4493153..4494205) 1 NC_011094.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4494205 rsgA 439843004646 rsgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosome-associated GTPase YP_002117293.1 4493153 R 439843 CDS YP_002117294.1 194733922 4494312..4494857 1 NC_011094.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4494857 439843004647 SeSA_A4619 Salmonella enterica subsp. enterica serovar Schwarzengrund str. oligoribonuclease YP_002117294.1 4494312 D 439843 CDS YP_002117295.1 194738205 complement(4494919..4495659) 1 NC_011094.1 identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 4495659 439843004648 SeSA_A4620 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine-binding periplasmic protein 2 YP_002117295.1 4494919 R 439843 CDS YP_002117296.1 194736736 complement(4496512..4497666) 1 NC_011094.1 identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 4497666 439843004651 SeSA_A4624 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-sulfur cluster binding protein YP_002117296.1 4496512 R 439843 CDS YP_002117297.1 194734619 4497653..4499197 1 NC_011094.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4499197 439843004652 SeSA_A4623 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117297.1 4497653 D 439843 CDS YP_002117298.1 194734142 4499172..4499630 1 NC_011094.1 possibly involved in cell wall synthesis; ATPase 4499630 439843004653 SeSA_A4625 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ATPase YP_002117298.1 4499172 D 439843 CDS YP_002117299.1 194737594 4499647..4500966 1 NC_011094.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4500966 439843004654 SeSA_A4626 Salmonella enterica subsp. enterica serovar Schwarzengrund str. N-acetylmuramoyl-l-alanine amidase II YP_002117299.1 4499647 D 439843 CDS YP_002117300.1 194734797 4500976..4502832 1 NC_011094.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4502832 mutL 439843004655 mutL Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA mismatch repair protein YP_002117300.1 4500976 D 439843 CDS YP_002117301.1 194737154 4502825..4503775 1 NC_011094.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4503775 miaA 439843004656 miaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA delta(2)-isopentenylpyrophosphate transferase YP_002117301.1 4502825 D 439843 CDS YP_002117302.1 194736692 4503858..4504166 1 NC_011094.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4504166 hfq 439843004657 hfq Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA-binding protein Hfq YP_002117302.1 4503858 D 439843 CDS YP_002117303.1 194735629 4504238..4505518 1 NC_011094.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4505518 hflX 439843004658 hflX Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTPase HflX YP_002117303.1 4504238 D 439843 CDS YP_002117304.1 194735493 4505733..4506992 1 NC_011094.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4506992 hflK 439843004659 hflK Salmonella enterica subsp. enterica serovar Schwarzengrund str. FtsH protease regulator HflK YP_002117304.1 4505733 D 439843 CDS YP_002117305.1 194736576 4506995..4507999 1 NC_011094.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4507999 hflC 439843004660 hflC Salmonella enterica subsp. enterica serovar Schwarzengrund str. FtsH protease regulator HflC YP_002117305.1 4506995 D 439843 CDS YP_002117306.2 449306340 4508078..4508275 1 NC_011094.1 hypothetical protein 4508275 439843004661 SeSA_A4633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117306.2 4508078 D 439843 CDS YP_002117307.1 194736769 4508378..4509676 1 NC_011094.1 'catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis'; adenylosuccinate synthetase 4509676 purA 439843004662 purA Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenylosuccinate synthetase YP_002117307.1 4508378 D 439843 CDS YP_002117308.1 194735133 4509896..4510321 1 NC_011094.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4510321 nsrR 439843004663 nsrR Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional repressor NsrR YP_002117308.1 4509896 D 439843 CDS YP_002117309.1 194735764 4510359..4512797 1 NC_011094.1 '3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs'; exoribonuclease R 4512797 rnr 439843004664 rnr Salmonella enterica subsp. enterica serovar Schwarzengrund str. exoribonuclease R YP_002117309.1 4510359 D 439843 CDS YP_002117310.1 194734163 4512888..4513619 1 NC_011094.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4513619 439843004665 SeSA_A4637 Salmonella enterica subsp. enterica serovar Schwarzengrund str. 23S rRNA (guanosine-2'-O-)-methyltransferase YP_002117310.1 4512888 D 439843 CDS YP_002117311.1 194734212 4513752..4514156 1 NC_011094.1 hypothetical protein 4514156 439843004666 SeSA_A4638 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117311.1 4513752 D 439843 CDS YP_008119815.1 513549434 4514171..4514851 1 NC_011094.1 hypothetical protein 4514851 439843004667 SeSA_A4639 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119815.1 4514171 D 439843 CDS YP_002117312.1 194736268 4514880..4515017 1 NC_011094.1 identified by glimmer; hypothetical protein 4515017 439843004668 SeSA_A4640 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117312.1 4514880 D 439843 CDS YP_002117313.1 194734664 4515102..4515761 1 NC_011094.1 hypothetical protein 4515761 439843004669 SeSA_A4641 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117313.1 4515102 D 439843 CDS YP_002117314.1 194735129 4515779..4516177 1 NC_011094.1 identified by match to protein family HMM PF03994; hypothetical protein 4516177 439843004670 SeSA_A4642 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117314.1 4515779 D 439843 CDS YP_002117315.1 194737754 4516187..4516825 1 NC_011094.1 identified by match to protein family HMM PF06693; hypothetical protein 4516825 439843004671 SeSA_A4643 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117315.1 4516187 D 439843 CDS YP_002117316.1 194738142 4516828..4517991 1 NC_011094.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 4517991 439843004672 SeSA_A4644 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glutathionylspermidine synthase YP_002117316.1 4516828 D 439843 CDS YP_002117317.1 194735634 4518076..4519698 1 NC_011094.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4519698 439843004673 SeSA_A4645 Salmonella enterica subsp. enterica serovar Schwarzengrund str. isovaleryl CoA dehydrogenase YP_002117317.1 4518076 D 439843 CDS YP_002117318.1 194737234 complement(4519743..4520018) 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 4520018 439843004674 SeSA_A4646 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117318.1 4519743 R 439843 CDS YP_002117319.1 194734640 complement(4520149..4520451) 1 NC_011094.1 'in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility'; biofilm stress and motility protein A 4520451 439843004675 SeSA_A4647 Salmonella enterica subsp. enterica serovar Schwarzengrund str. biofilm stress and motility protein A YP_002117319.1 4520149 R 439843 CDS YP_002117320.1 194737159 4520662..4521411 1 NC_011094.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4521411 439843004676 SeSA_A4648 Salmonella enterica subsp. enterica serovar Schwarzengrund str. esterase YP_002117320.1 4520662 D 439843 CDS YP_002117321.1 194735185 complement(4521408..4522163) 1 NC_011094.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4522163 439843004677 SeSA_A4649 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional repressor UlaR YP_002117321.1 4521408 R 439843 CDS YP_002117322.1 194736838 complement(4522268..4523332) 1 NC_011094.1 L-ascorbate 6-phosphate lactonase 4523332 439843004678 SeSA_A4650 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-ascorbate 6-phosphate lactonase YP_002117322.1 4522268 R 439843 CDS YP_002117323.1 194735940 4523695..4525092 1 NC_011094.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4525092 ulaA 439843004679 ulaA Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system ascorbate-specific transporter subunit IIC YP_002117323.1 4523695 D 439843 CDS YP_002117324.1 194736677 4525108..4525407 1 NC_011094.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4525407 ulaB 439843004680 ulaB Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system L-ascorbate-specific transporter subunit IIB YP_002117324.1 4525108 D 439843 CDS YP_002117325.1 194736274 4525422..4525886 1 NC_011094.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4525886 ulaC 439843004681 ulaC Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system L-ascorbate-specific transporter subunit IIA YP_002117325.1 4525422 D 439843 CDS YP_002117326.1 194736734 4525900..4526550 1 NC_011094.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4526550 ulaD 439843004682 ulaD Salmonella enterica subsp. enterica serovar Schwarzengrund str. 3-keto-L-gulonate-6-phosphate decarboxylase YP_002117326.1 4525900 D 439843 CDS YP_002117327.1 194734891 4526560..4527414 1 NC_011094.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4527414 ulaE 439843004683 ulaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-xylulose 5-phosphate 3-epimerase YP_002117327.1 4526560 D 439843 CDS YP_002117328.1 194735150 4527414..4528100 1 NC_011094.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4528100 sgaE 439843004684 sgaE Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-ribulose-5-phosphate 4-epimerase YP_002117328.1 4527414 D 439843 CDS YP_002117329.1 194738193 4528188..4528745 1 NC_011094.1 identified by match to protein family HMM PF07274; hypothetical protein 4528745 439843004685 SeSA_A4657 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117329.1 4528188 D 439843 CDS YP_002117330.1 194734392 complement(4528798..4529073) 1 NC_011094.1 identified by match to protein family HMM PF07338; hypothetical protein 4529073 439843004686 SeSA_A4658 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117330.1 4528798 R 439843 CDS YP_002117331.1 194735616 4529460..4529855 1 NC_011094.1 'binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21'; 30S ribosomal protein S6 4529855 rpsF 439843004687 rpsF Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S6 YP_002117331.1 4529460 D 439843 CDS YP_002117332.1 194735912 4529862..4530176 1 NC_011094.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4530176 priB 439843004688 priB Salmonella enterica subsp. enterica serovar Schwarzengrund str. primosomal replication protein N YP_002117332.1 4529862 D 439843 CDS YP_002117333.1 194734283 4530181..4530408 1 NC_011094.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4530408 rpsR 439843004689 rpsR Salmonella enterica subsp. enterica serovar Schwarzengrund str. 30S ribosomal protein S18 YP_002117333.1 4530181 D 439843 CDS YP_002117334.1 194735222 4530450..4530899 1 NC_011094.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4530899 rplI 439843004690 rplI Salmonella enterica subsp. enterica serovar Schwarzengrund str. 50S ribosomal protein L9 YP_002117334.1 4530450 D 439843 CDS YP_002117335.1 194737970 4531047..4531973 1 NC_011094.1 identified by match to protein family HMM PF00892; exported membrane protein 4531973 439843004691 SeSA_A4663 Salmonella enterica subsp. enterica serovar Schwarzengrund str. exported membrane protein YP_002117335.1 4531047 D 439843 CDS YP_002117336.1 194737359 complement(4532023..4532658) 1 NC_011094.1 identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A 4532658 439843004692 SeSA_A4664 Salmonella enterica subsp. enterica serovar Schwarzengrund str. opacity-associated protein A YP_002117336.1 4532023 R 439843 CDS YP_002117337.1 194734970 4532878..4533498 1 NC_011094.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4533498 439843004693 SeSA_A4665 Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidyl-prolyl cis-trans isomerase YP_002117337.1 4532878 D 439843 CDS YP_002117338.1 194734481 4533794..4535203 1 NC_011094.1 'involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine'; D-alanine/D-serine/glycine permease 4535203 cycA 439843004694 cycA Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-alanine/D-serine/glycine permease YP_002117338.1 4533794 D 439843 CDS YP_002117339.1 194735143 complement(4535315..4535977) 1 NC_011094.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4535977 439843004695 SeSA_A4667 Salmonella enterica subsp. enterica serovar Schwarzengrund str. iron-sulfur cluster repair di-iron protein YP_002117339.1 4535315 R 439843 CDS YP_002117340.1 194735952 complement(4536080..4537045) 1 NC_011094.1 identified by match to protein family HMM PF00892; hypothetical protein 4537045 439843004696 SeSA_A4668 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117340.1 4536080 R 439843 CDS YP_002117341.1 194735569 complement(4537126..4537974) 1 NC_011094.1 identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein 4537974 439843004697 SeSA_A4669 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117341.1 4537126 R 439843 CDS YP_008119816.1 513549435 4538062..4538448 1 NC_011094.1 HxlR family transcriptional regulator 4538448 439843004698 SeSA_A4670 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HxlR family transcriptional regulator YP_008119816.1 4538062 D 439843 CDS YP_002117342.1 194735700 complement(4538506..4540449) 1 NC_011094.1 'periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate'; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4540449 cpdB 439843004699 cpdB Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_002117342.1 4538506 R 439843 CDS YP_002117343.1 194738061 4540717..4541457 1 NC_011094.1 'catalyzes the formation of AMP from adenosine-3',5'-bisphosphate'; adenosine-3'(2'),5'-bisphosphate nucleotidase 4541457 cysQ 439843004700 cysQ Salmonella enterica subsp. enterica serovar Schwarzengrund str. adenosine-3'(2'),5'-bisphosphate nucleotidase YP_002117343.1 4540717 D 439843 CDS YP_002117344.1 194735307 complement(4541447..4542004) 1 NC_011094.1 identified by match to protein family HMM PF09695; match to protein family HMM TIGR01626; hypothetical protein 4542004 439843004701 SeSA_A4673 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117344.1 4541447 R 439843 CDS YP_002117345.1 194733914 4542331..4542537 1 NC_011094.1 identified by match to protein family HMM PF06526; hypothetical protein 4542537 439843004702 SeSA_A4674 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117345.1 4542331 D 439843 CDS YP_002117346.1 194736200 complement(4542621..4543964) 1 NC_011094.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 4543964 439843004703 SeSA_A4675 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002117346.1 4542621 R 439843 CDS YP_002117347.1 194736802 complement(4544147..4544785) 1 NC_011094.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4544785 msrA 439843004704 msrA Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionine sulfoxide reductase A YP_002117347.1 4544147 R 439843 CDS YP_002117348.1 194735568 4544840..4544956 1 NC_011094.1 identified by glimmer; hypothetical protein 4544956 439843004705 SeSA_A4677 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117348.1 4544840 D 439843 CDS YP_002117349.1 194736090 4544998..4546731 1 NC_011094.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein, OMP85 family protein 4546731 439843004706 SeSA_A4678 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane protein, OMP85 family protein YP_002117349.1 4544998 D 439843 CDS YP_002117350.1 194736610 4546728..4550507 1 NC_011094.1 identified by match to protein family HMM PF04357; hypothetical protein 4550507 439843004707 SeSA_A4679 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117350.1 4546728 D 439843 CDS YP_002117351.1 194737100 4550510..4550854 1 NC_011094.1 identified by match to protein family HMM PF06094; hypothetical protein 4550854 439843004708 SeSA_A4680 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117351.1 4550510 D 439843 CDS YP_002117352.1 194735170 complement(4550909..4552117) 1 NC_011094.1 identified by match to protein family HMM PF07690; sugar transporter 4552117 439843004709 SeSA_A4681 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sugar transporter YP_002117352.1 4550909 R 439843 CDS YP_002117353.1 194735676 complement(4552114..4553277) 1 NC_011094.1 identified by match to protein family HMM PF01979; metallo-dependent hydrolase 4553277 439843004710 SeSA_A4682 Salmonella enterica subsp. enterica serovar Schwarzengrund str. metallo-dependent hydrolase YP_002117353.1 4552114 R 439843 CDS YP_002117354.1 194737056 complement(4553687..4554217) 1 NC_011094.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4554217 ppa 439843004711 ppa Salmonella enterica subsp. enterica serovar Schwarzengrund str. inorganic pyrophosphatase YP_002117354.1 4553687 R 439843 CDS YP_002117355.1 194737555 complement(4554444..4555442) 1 NC_011094.1 'catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate'; fructose-1,6-bisphosphatase 4555442 fbp 439843004712 fbp Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose-1,6-bisphosphatase YP_002117355.1 4554444 R 439843 CDS YP_002117356.1 194736211 4555617..4556990 1 NC_011094.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4556990 mpl 439843004714 mpl Salmonella enterica subsp. enterica serovar Schwarzengrund str. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002117356.1 4555617 D 439843 CDS YP_002117357.1 194738111 complement(4557097..4557648) 1 NC_011094.1 identified by match to protein family HMM PF04751; hypothetical protein 4557648 yjgA 439843004715 yjgA Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117357.1 4557097 R 439843 CDS YP_002117358.1 194737508 4557756..4559096 1 NC_011094.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4559096 pmbA 439843004716 pmbA Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptidase PmbA YP_002117358.1 4557756 D 439843 CDS YP_002117359.1 194735427 4559195..4559581 1 NC_011094.1 identified by match to protein family HMM PF07361; soluBle cytochrome b562 4559581 439843004717 SeSA_A4689 Salmonella enterica subsp. enterica serovar Schwarzengrund str. soluBle cytochrome b562 YP_002117359.1 4559195 D 439843 CDS YP_002117360.1 194734110 4559868..4560197 1 NC_011094.1 identified by match to protein family HMM PF00874; match to protein family HMM TIGR03582; PRD domain-containing protein 4560197 439843004719 SeSA_A4691 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PRD domain-containing protein YP_002117360.1 4559868 D 439843 CDS YP_002117361.1 194734745 4560208..4560570 1 NC_011094.1 identified by match to protein family HMM TIGR03577; hypothetical protein 4560570 439843004720 SeSA_A4692 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117361.1 4560208 D 439843 CDS YP_002117362.1 194737560 4560570..4560872 1 NC_011094.1 identified by match to protein family HMM TIGR03578; hypothetical protein 4560872 439843004721 SeSA_A4693 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117362.1 4560570 D 439843 CDS YP_002117363.1 194734792 4560895..4561671 1 NC_011094.1 identified by match to protein family HMM TIGR03580; hypothetical protein 4561671 439843004722 SeSA_A4694 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117363.1 4560895 D 439843 CDS YP_002117364.1 194736259 4561683..4562327 1 NC_011094.1 identified by match to protein family HMM TIGR03579; hypothetical protein 4562327 439843004723 SeSA_A4695 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117364.1 4561683 D 439843 CDS YP_002117365.1 194737907 4562386..4563519 1 NC_011094.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4563519 439843004724 SeSA_A4696 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dihydroorotase YP_002117365.1 4562386 D 439843 CDS YP_002117366.1 194736164 4563503..4564621 1 NC_011094.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4564621 439843004725 SeSA_A4697 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117366.1 4563503 D 439843 CDS YP_002117367.1 194735522 4564618..4565358 1 NC_011094.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581; hypothetical protein 4565358 439843004726 SeSA_A4698 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117367.1 4564618 D 439843 CDS YP_002117368.1 194736571 4565375..4567288 1 NC_011094.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; transcriptional antiterminator, BglG 4567288 439843004727 SeSA_A4699 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional antiterminator, BglG YP_002117368.1 4565375 D 439843 CDS YP_002117369.1 194737059 4567366..4567608 1 NC_011094.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4567608 439843004728 SeSA_A4700 Salmonella enterica subsp. enterica serovar Schwarzengrund str. bifunctional antitoxin/transcriptional repressor RelB YP_002117369.1 4567366 D 439843 CDS YP_002117370.1 194735768 4567598..4567882 1 NC_011094.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4567882 439843004729 SeSA_A4701 Salmonella enterica subsp. enterica serovar Schwarzengrund str. stability protein StbE YP_002117370.1 4567598 D 439843 CDS YP_002117371.1 194733978 complement(4567886..4568350) 1 NC_011094.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4568350 nrdG 439843004730 nrdG Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic ribonucleotide reductase-activating protein YP_002117371.1 4567886 R 439843 CDS YP_002117372.1 194736623 complement(4568567..4570705) 1 NC_011094.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4570705 nrdD 439843004731 nrdD Salmonella enterica subsp. enterica serovar Schwarzengrund str. anaerobic ribonucleoside triphosphate reductase YP_002117372.1 4568567 R 439843 CDS YP_002117373.1 194737750 4570910..4571080 1 NC_011094.1 hypothetical protein 4571080 439843004732 SeSA_A4704 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117373.1 4570910 D 439843 CDS YP_002117374.1 194737289 complement(4571114..4572766) 1 NC_011094.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase 4572766 treC 439843004733 treC Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalose-6-phosphate hydrolase YP_002117374.1 4571114 R 439843 CDS YP_002117375.1 194737770 complement(4572816..4574234) 1 NC_011094.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 4574234 treB 439843004734 treB Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system trehalose(maltose)-specific transporter subunit IIBC YP_002117375.1 4572816 R 439843 CDS YP_002117376.1 194737120 complement(4574372..4575319) 1 NC_011094.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4575319 treR 439843004735 treR Salmonella enterica subsp. enterica serovar Schwarzengrund str. trehalose repressor YP_002117376.1 4574372 R 439843 CDS YP_002117377.2 449306341 4575710..4578418 1 NC_011094.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4578418 mgtA 439843004737 mgtA Salmonella enterica subsp. enterica serovar Schwarzengrund str. magnesium-transporting ATPase MgtA YP_002117377.2 4575710 D 439843 CDS YP_002117378.1 194737969 complement(4578534..4578980) 1 NC_011094.1 identified by match to protein family HMM PF01527; transposase subfamily protein 4578980 439843004738 SeSA_A4710 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase subfamily protein YP_002117378.1 4578534 R 439843 CDS YP_002117379.1 194736363 complement(4579055..4579441) 1 NC_011094.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 4579441 439843004739 SeSA_A4711 Salmonella enterica subsp. enterica serovar Schwarzengrund str. endoribonuclease L-PSP YP_002117379.1 4579055 R 439843 CDS YP_002117380.1 194737062 complement(4579518..4579979) 1 NC_011094.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 4579979 pyrI 439843004740 pyrI Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate carbamoyltransferase YP_002117380.1 4579518 R 439843 CDS YP_002117381.1 194736859 complement(4579992..4580927) 1 NC_011094.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 4580927 pyrB 439843004741 pyrB Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate carbamoyltransferase YP_002117381.1 4579992 R 439843 CDS YP_002117382.1 194735287 complement(4581154..4581642) 1 NC_011094.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR 4581642 439843004742 SeSA_A4714 Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine repressor ArgR YP_002117382.1 4581154 R 439843 CDS YP_002117383.1 194737908 complement(4581639..4581755) 1 NC_011094.1 identified by glimmer; hypothetical protein 4581755 439843004743 SeSA_A4715 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117383.1 4581639 R 439843 CDS YP_002117384.1 194736293 complement(4581829..4583232) 1 NC_011094.1 identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier 4583232 439843004744 SeSA_A4716 Salmonella enterica subsp. enterica serovar Schwarzengrund str. C4-dicarboxylate anaerobic carrier YP_002117384.1 4581829 R 439843 CDS YP_002117385.1 194738038 complement(4584290..4584427) 1 NC_011094.1 hypothetical protein 4584427 439843004746 SeSA_A4719 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117385.1 4584290 R 439843 CDS YP_002117386.1 194737567 complement(4584402..4585334) 1 NC_011094.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4585334 arcC 439843004747 arcC Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbamate kinase YP_002117386.1 4584402 R 439843 CDS YP_002117387.1 194734217 complement(4585345..4586565) 1 NC_011094.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4586565 arcA 439843004748 arcA Salmonella enterica subsp. enterica serovar Schwarzengrund str. arginine deiminase YP_002117387.1 4585345 R 439843 CDS YP_002117388.1 194736022 4586666..4586857 1 NC_011094.1 hypothetical protein 4586857 439843004749 SeSA_A4722 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117388.1 4586666 D 439843 CDS YP_002117389.1 194737795 4587241..4587693 1 NC_011094.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4587693 439843004750 SeSA_A4723 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117389.1 4587241 D 439843 CDS YP_002117390.1 194737318 complement(4587766..4588770) 1 NC_011094.1 'catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.'; ornithine carbamoyltransferase subunit I 4588770 argF 439843004751 argF Salmonella enterica subsp. enterica serovar Schwarzengrund str. ornithine carbamoyltransferase subunit I YP_002117390.1 4587766 R 439843 CDS YP_002117391.1 194734898 4588936..4589352 1 NC_011094.1 identified by match to protein family HMM PF06877; hypothetical protein 4589352 439843004752 SeSA_A4725 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117391.1 4588936 D 439843 CDS YP_002117392.1 194735698 4589364..4590176 1 NC_011094.1 identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4590176 439843004753 SeSA_A4726 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tRNA-(ms[2]io[6]A)-hydroxylase YP_002117392.1 4589364 D 439843 CDS YP_002117393.1 194734692 complement(4590421..4590909) 1 NC_011094.1 hypothetical protein 4590909 439843004755 SeSA_A4728 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117393.1 4590421 R 439843 CDS YP_002117394.1 194734922 complement(4591016..4591519) 1 NC_011094.1 identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 4591519 439843004756 SeSA_A4729 Salmonella enterica subsp. enterica serovar Schwarzengrund str. acetyltransferase, gnat family protein YP_002117394.1 4591016 R 439843 CDS YP_002117395.1 194734516 4591714..4592901 1 NC_011094.1 identified by match to protein family HMM PF05987; hypothetical protein 4592901 439843004757 SeSA_A4730 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117395.1 4591714 D 439843 CDS YP_002117396.1 194735911 complement(4593043..4595898) 1 NC_011094.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4595898 valS 439843004758 valS Salmonella enterica subsp. enterica serovar Schwarzengrund str. valyl-tRNA synthetase YP_002117396.1 4593043 R 439843 CDS YP_002117397.1 194735547 complement(4595898..4596380) 1 NC_011094.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4596380 holC 439843004759 holC Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit chi YP_002117397.1 4595898 R 439843 CDS YP_002117398.1 194737065 complement(4596478..4597989) 1 NC_011094.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4597989 pepA 439843004760 pepA Salmonella enterica subsp. enterica serovar Schwarzengrund str. leucyl aminopeptidase YP_002117398.1 4596478 R 439843 CDS YP_002117399.1 194736994 4598384..4599484 1 NC_011094.1 identified by match to protein family HMM PF03739; permease 4599484 439843004761 SeSA_A4734 Salmonella enterica subsp. enterica serovar Schwarzengrund str. permease YP_002117399.1 4598384 D 439843 CDS YP_002117400.1 194738007 4599484..4600566 1 NC_011094.1 identified by match to protein family HMM PF03739; hypothetical protein 4600566 439843004762 SeSA_A4735 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117400.1 4599484 D 439843 CDS YP_002117401.1 194736291 complement(4600783..4601781) 1 NC_011094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR 4601781 439843004763 SeSA_A4736 Salmonella enterica subsp. enterica serovar Schwarzengrund str. HTH-type transcriptional regulator IdnR YP_002117401.1 4600783 R 439843 CDS YP_002117402.1 194734465 complement(4601845..4603164) 1 NC_011094.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; transporter gluconate:H+ symporter (GntP) family protein 4603164 439843004764 SeSA_A4737 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter gluconate:H+ symporter (GntP) family protein YP_002117402.1 4601845 R 439843 CDS YP_002117403.1 194737794 complement(4603226..4603990) 1 NC_011094.1 'Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate'; gluconate 5-dehydrogenase 4603990 439843004765 SeSA_A4738 Salmonella enterica subsp. enterica serovar Schwarzengrund str. gluconate 5-dehydrogenase YP_002117403.1 4603226 R 439843 CDS YP_002117404.1 194734309 complement(4604015..4605046) 1 NC_011094.1 NAD-binding; L-idonate 5-dehydrogenase 4605046 439843004766 SeSA_A4739 Salmonella enterica subsp. enterica serovar Schwarzengrund str. L-idonate 5-dehydrogenase YP_002117404.1 4604015 R 439843 CDS YP_002117405.1 194734812 4605263..4605793 1 NC_011094.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4605793 idnK 439843004767 idnK Salmonella enterica subsp. enterica serovar Schwarzengrund str. D-gluconate kinase YP_002117405.1 4605263 D 439843 CDS YP_002117406.1 194735349 complement(4605821..4606840) 1 NC_011094.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein 4606840 439843004768 SeSA_A4741 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117406.1 4605821 R 439843 CDS YP_002117407.1 194735264 4607727..4607849 1 NC_011094.1 transcriptional regulator, CopG family protein 4607849 439843004770 SeSA_A4743 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transcriptional regulator, CopG family protein YP_002117407.1 4607727 D 439843 CDS YP_002117408.1 194736825 4607958..4608197 1 NC_011094.1 identified by match to protein family HMM PF07362; hypothetical protein 4608197 439843004771 SeSA_A4744 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117408.1 4607958 D 439843 CDS YP_002117409.1 194738393 4608200..4608508 1 NC_011094.1 identified by match to protein family HMM PF01845; cytotoxic protein CcdB 4608508 439843004772 SeSA_A4745 Salmonella enterica subsp. enterica serovar Schwarzengrund str. cytotoxic protein CcdB YP_002117409.1 4608200 D 439843 CDS YP_002117410.1 194737135 4609593..4613108 1 NC_011094.1 identified by match to protein family HMM PF00614; superfamily I DNA helicase 4613108 439843004773 SeSA_A4746 Salmonella enterica subsp. enterica serovar Schwarzengrund str. superfamily I DNA helicase YP_002117410.1 4609593 D 439843 CDS YP_002117411.1 194736513 4613401..4614825 1 NC_011094.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase 4614825 439843004774 SeSA_A4747 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA cytosine methylase YP_002117411.1 4613401 D 439843 CDS YP_002117412.1 194735875 complement(4614868..4616076) 1 NC_011094.1 identified by match to protein family HMM PF09019; match to protein family HMM PF09217; type II restriction enzyme EcoRII 4616076 439843004775 SeSA_A4748 Salmonella enterica subsp. enterica serovar Schwarzengrund str. type II restriction enzyme EcoRII YP_002117412.1 4614868 R 439843 CDS YP_002117413.1 194735234 complement(4616200..4616433) 1 NC_011094.1 hypothetical protein 4616433 439843004776 SeSA_A4749 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117413.1 4616200 R 439843 CDS YP_002117414.1 194737494 complement(4616937..4617653) 1 NC_011094.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 4617653 439843004777 SeSA_A4750 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117414.1 4616937 R 439843 CDS YP_002117415.1 194734574 4617751..4617882 1 NC_011094.1 identified by glimmer; hypothetical protein 4617882 439843004778 SeSA_A4751 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117415.1 4617751 D 439843 CDS YP_002117416.1 194736219 complement(4618213..4619838) 1 NC_011094.1 identified by match to protein family HMM PF05175; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242; methionine biosynthesis protein MetW 4619838 439843004779 SeSA_A4752 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methionine biosynthesis protein MetW YP_002117416.1 4618213 R 439843 CDS YP_002117417.1 194737804 complement(4619849..4620106) 1 NC_011094.1 hypothetical protein 4620106 439843004780 SeSA_A4753 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117417.1 4619849 R 439843 CDS YP_002117418.1 194737887 complement(4620349..4620540) 1 NC_011094.1 identified by glimmer; hypothetical protein 4620540 439843004781 SeSA_A4754 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117418.1 4620349 R 439843 CDS YP_002117419.1 194736691 4620594..4621202 1 NC_011094.1 identified by match to protein family HMM PF06353; hypothetical protein 4621202 439843004782 SeSA_A4755 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117419.1 4620594 D 439843 CDS YP_002117420.1 194733965 4621554..4622465 1 NC_011094.1 hypothetical protein 4622465 439843004783 SeSA_A4756 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117420.1 4621554 D 439843 CDS YP_002117421.1 194734596 complement(4622504..4622644) 1 NC_011094.1 identified by glimmer; hypothetical protein 4622644 439843004784 SeSA_A4758 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117421.1 4622504 R 439843 CDS YP_002117422.1 194735232 4622643..4622771 1 NC_011094.1 identified by glimmer; hypothetical protein 4622771 439843004785 SeSA_A4757 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117422.1 4622643 D 439843 CDS YP_002117423.1 194735515 4622764..4623132 1 NC_011094.1 identified by match to protein family HMM PF03625; hypothetical protein 4623132 439843004786 SeSA_A4759 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117423.1 4622764 D 439843 CDS YP_002117424.1 194735876 complement(4623129..4623803) 1 NC_011094.1 identified by match to protein family HMM PF01738; dienelactone hydrolase 4623803 439843004787 SeSA_A4760 Salmonella enterica subsp. enterica serovar Schwarzengrund str. dienelactone hydrolase YP_002117424.1 4623129 R 439843 CDS YP_002117425.1 194735969 4624153..4624926 1 NC_011094.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4624926 439843004788 SeSA_A4761 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional repressor UxuR YP_002117425.1 4624153 D 439843 CDS YP_002117426.1 194736192 complement(4624927..4625940) 1 NC_011094.1 'catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA'; tryptophanyl-tRNA synthetase II 4625940 trpS 439843004789 trpS Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophanyl-tRNA synthetase II YP_002117426.1 4624927 R 439843 CDS YP_002117427.1 194737211 4626237..4626389 1 NC_011094.1 hypothetical protein 4626389 439843004790 SeSA_A4763 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117427.1 4626237 D 439843 CDS YP_002117428.2 449306342 4626658..4627188 1 NC_011094.1 identified by match to protein family HMM PF05638; hypothetical protein 4627188 439843004791 SeSA_A4764 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117428.2 4626658 D 439843 CDS YP_002117429.1 194737615 4627222..4627344 1 NC_011094.1 identified by glimmer; hypothetical protein 4627344 439843004792 SeSA_A4765 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117429.1 4627222 D 439843 CDS YP_002117430.1 194735758 4627427..4628161 1 NC_011094.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4628161 439843004793 SeSA_A4766 Salmonella enterica subsp. enterica serovar Schwarzengrund str. aspartate racemase YP_002117430.1 4627427 D 439843 CDS YP_002117431.1 194734115 complement(4628167..4629075) 1 NC_011094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 4629075 439843004794 SeSA_A4767 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional regulator YP_002117431.1 4628167 R 439843 CDS YP_002117432.1 194736715 complement(4629194..4630366) 1 NC_011094.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 4630366 iadA 439843004795 iadA Salmonella enterica subsp. enterica serovar Schwarzengrund str. isoaspartyl dipeptidase YP_002117432.1 4629194 R 439843 CDS YP_002117433.1 194737185 complement(4630379..4630840) 1 NC_011094.1 identified by match to protein family HMM PF07670; hypothetical protein 4630840 439843004796 SeSA_A4769 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117433.1 4630379 R 439843 CDS YP_002117434.1 194736685 complement(4630837..4631508) 1 NC_011094.1 identified by match to protein family HMM PF07670; transporter gate domain-containing protein 4631508 439843004797 SeSA_A4770 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter gate domain-containing protein YP_002117434.1 4630837 R 439843 CDS YP_002117435.1 194737148 4631691..4631819 1 NC_011094.1 identified by glimmer; hypothetical protein 4631819 439843004798 SeSA_A4771 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117435.1 4631691 D 439843 CDS YP_002117436.1 194737502 complement(4632380..4633564) 1 NC_011094.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690; transporter major facilitator family protein 4633564 439843004799 SeSA_A4772 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter major facilitator family protein YP_002117436.1 4632380 R 439843 CDS YP_002117437.1 194738270 complement(4633784..4635055) 1 NC_011094.1 identified by match to protein family HMM PF04286; hypothetical protein 4635055 439843004800 SeSA_A4773 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117437.1 4633784 R 439843 CDS YP_002117438.1 194736781 complement(4635142..4636383) 1 NC_011094.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 4636383 439843004801 SeSA_A4774 Salmonella enterica subsp. enterica serovar Schwarzengrund str. multidrug resistance protein MdtM YP_002117438.1 4635142 R 439843 CDS YP_002117439.1 194735176 complement(4636440..4636583) 1 NC_011094.1 identified by glimmer; hypothetical protein 4636583 439843004802 SeSA_A4775 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117439.1 4636440 R 439843 CDS YP_002117440.1 194738092 4636862..4637815 1 NC_011094.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 4637815 439843004803 SeSA_A4776 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117440.1 4636862 D 439843 CDS YP_002117441.1 194734765 complement(4637812..4637925) 1 NC_011094.1 identified by glimmer; hypothetical protein 4637925 439843004804 SeSA_A4777 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117441.1 4637812 R 439843 CDS YP_002117442.1 194736366 4637996..4639366 1 NC_011094.1 identified by match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase 4639366 439843004805 SeSA_A4778 Salmonella enterica subsp. enterica serovar Schwarzengrund str. succinate-semialdehyde dehydrogenase YP_002117442.1 4637996 D 439843 CDS YP_002117443.1 194736829 4639571..4639735 1 NC_011094.1 identified by match to protein family HMM PF06568; hypothetical protein 4639735 439843004806 SeSA_A4779 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117443.1 4639571 D 439843 CDS YP_002117444.1 194735536 complement(4639812..4640732) 1 NC_011094.1 transporter 4640732 439843004807 SeSA_A4780 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter YP_002117444.1 4639812 R 439843 CDS YP_002117445.1 194736153 complement(4641143..4641784) 1 NC_011094.1 identified by match to protein family HMM PF01810; transporter LysE family protein 4641784 439843004808 SeSA_A4781 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transporter LysE family protein YP_002117445.1 4641143 R 439843 CDS YP_002117446.1 194734218 complement(4641832..4642647) 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; negative transcriptional regulator of cel operon 4642647 439843004809 SeSA_A4782 Salmonella enterica subsp. enterica serovar Schwarzengrund str. negative transcriptional regulator of cel operon YP_002117446.1 4641832 R 439843 CDS YP_002117447.1 194734841 complement(4642684..4643640) 1 NC_011094.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA 4643640 439843004810 SeSA_A4783 Salmonella enterica subsp. enterica serovar Schwarzengrund str. GTP-binding protein YjiA YP_002117447.1 4642684 R 439843 CDS YP_002117448.1 194735848 complement(4643651..4643854) 1 NC_011094.1 identified by match to protein family HMM PF04328; hypothetical protein 4643854 439843004811 SeSA_A4784 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117448.1 4643651 R 439843 CDS YP_002117449.1 194734176 complement(4643949..4646099) 1 NC_011094.1 identified by match to protein family HMM PF02554; carbon starvation family protein 4646099 439843004812 SeSA_A4785 Salmonella enterica subsp. enterica serovar Schwarzengrund str. carbon starvation family protein YP_002117449.1 4643949 R 439843 CDS YP_002117450.1 194738049 4646466..4648127 1 NC_011094.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4648127 439843004813 SeSA_A4786 Salmonella enterica subsp. enterica serovar Schwarzengrund str. methyl-accepting chemotaxis protein I YP_002117450.1 4646466 D 439843 CDS YP_002117451.1 194736471 complement(4648239..4648388) 1 NC_011094.1 hypothetical protein 4648388 439843004814 SeSA_A4787 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117451.1 4648239 R 439843 CDS YP_002117452.1 194737223 4648450..4651215 1 NC_011094.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; sigma-54 dependent DNA-binding response regulator 4651215 439843004815 SeSA_A4788 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sigma-54 dependent DNA-binding response regulator YP_002117452.1 4648450 D 439843 CDS YP_002117453.1 194735606 4651317..4651739 1 NC_011094.1 identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4651739 439843004816 SeSA_A4789 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system fructose subfamily transporter subunit IIA YP_002117453.1 4651317 D 439843 CDS YP_002117454.1 194735118 4651754..4652215 1 NC_011094.1 identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4652215 439843004817 SeSA_A4790 Salmonella enterica subsp. enterica serovar Schwarzengrund str. PTS system transporter subunit IIB YP_002117454.1 4651754 D 439843 CDS YP_002117455.1 194735621 4652241..4653020 1 NC_011094.1 identified by match to protein family HMM PF03609; phosphotransferase enzyme II C component 4653020 439843004818 SeSA_A4791 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphotransferase enzyme II C component YP_002117455.1 4652241 D 439843 CDS YP_002117456.1 194734138 4652998..4653846 1 NC_011094.1 identified by match to protein family HMM PF03613; fructose permease iid component 4653846 439843004819 SeSA_A4792 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fructose permease iid component YP_002117456.1 4652998 D 439843 CDS YP_002117457.1 194734617 4653859..4654920 1 NC_011094.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4654920 439843004820 SeSA_A4793 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucosamine--fructose-6-phosphate aminotransferase YP_002117457.1 4653859 D 439843 CDS YP_002117458.1 194736701 4654938..4655948 1 NC_011094.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase 4655948 439843004821 SeSA_A4794 Salmonella enterica subsp. enterica serovar Schwarzengrund str. glucosamine--fructose-6-phosphate aminotransferase YP_002117458.1 4654938 D 439843 CDS YP_002117459.1 194735978 complement(4656082..4658373) 1 NC_011094.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4658373 439843004822 SeSA_A4795 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerol transferase I YP_002117459.1 4656082 R 439843 CDS YP_002117460.1 194735148 complement(4658656..4659147) 1 NC_011094.1 hypothetical protein 4659147 439843004823 SeSA_A4796 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117460.1 4658656 R 439843 CDS YP_002117461.1 194734923 complement(4659205..4659942) 1 NC_011094.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4659942 439843004824 SeSA_A4797 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA replication protein DnaC YP_002117461.1 4659205 R 439843 CDS YP_002117462.1 194734128 complement(4659945..4660484) 1 NC_011094.1 'This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N''; primosomal protein DnaI 4660484 439843004825 SeSA_A4798 Salmonella enterica subsp. enterica serovar Schwarzengrund str. primosomal protein DnaI YP_002117462.1 4659945 R 439843 CDS YP_002117463.1 194737886 complement(4660577..4661050) 1 NC_011094.1 hypothetical protein 4661050 439843004826 SeSA_A4799 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117463.1 4660577 R 439843 CDS YP_002117464.1 194736446 complement(4661041..4661985) 1 NC_011094.1 identified by match to protein family HMM PF06738; hypothetical protein 4661985 439843004827 SeSA_A4800 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117464.1 4661041 R 439843 CDS YP_002117465.1 194735708 4663215..4663889 1 NC_011094.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4663889 439843004828 SeSA_A4801 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding transcriptional activator BglJ YP_002117465.1 4663215 D 439843 CDS YP_002117466.1 194735931 complement(4663940..4664398) 1 NC_011094.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 4664398 439843004829 SeSA_A4802 Salmonella enterica subsp. enterica serovar Schwarzengrund str. prolyl-tRNA synthetase YP_002117466.1 4663940 R 439843 CDS YP_002117467.1 194734691 complement(4664549..4665337) 1 NC_011094.1 identified by match to protein family HMM PF06276; ferric hydroximate transport ferric iron reductase 4665337 439843004830 SeSA_A4803 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ferric hydroximate transport ferric iron reductase YP_002117467.1 4664549 R 439843 CDS YP_002117468.2 449306343 complement(4665458..4666522) 1 NC_011094.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 4666522 439843004831 SeSA_A4804 Salmonella enterica subsp. enterica serovar Schwarzengrund str. diguanylate cyclase YP_002117468.2 4665458 R 439843 CDS YP_002117469.1 194736870 4666773..4667009 1 NC_011094.1 identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4667009 439843004832 SeSA_A4805 Salmonella enterica subsp. enterica serovar Schwarzengrund str. tryptophan-specific transport protein YP_002117469.1 4666773 D 439843 CDS YP_002117470.1 194736271 complement(4667550..4668578) 1 NC_011094.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4668578 rsmC 439843004836 rsmC Salmonella enterica subsp. enterica serovar Schwarzengrund str. 16S ribosomal RNA m2G1207 methyltransferase YP_002117470.1 4667550 R 439843 CDS YP_002117471.1 194735965 4668681..4669118 1 NC_011094.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4669118 holD 439843004837 holD Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA polymerase III subunit psi YP_002117471.1 4668681 D 439843 CDS YP_002117472.2 449306344 4669063..4669509 1 NC_011094.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4669509 rimI 439843004838 rimI Salmonella enterica subsp. enterica serovar Schwarzengrund str. ribosomal-protein-alanine acetyltransferase YP_002117472.2 4669063 D 439843 CDS YP_002117473.1 194734990 4669531..4670208 1 NC_011094.1 'manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily'; nucleotidase 4670208 yjjG 439843004839 yjjG Salmonella enterica subsp. enterica serovar Schwarzengrund str. nucleotidase YP_002117473.1 4669531 D 439843 CDS YP_002117474.1 194734334 4670300..4671889 1 NC_011094.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4671889 prfC 439843004840 prfC Salmonella enterica subsp. enterica serovar Schwarzengrund str. peptide chain release factor 3 YP_002117474.1 4670300 D 439843 CDS YP_002117475.1 194737402 4672081..4672215 1 NC_011094.1 identified by glimmer; hypothetical protein 4672215 439843004841 SeSA_A4814 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117475.1 4672081 D 439843 CDS YP_002117476.1 194737895 4672291..4672908 1 NC_011094.1 identified by match to protein family HMM PF04972; hypothetical protein 4672908 osmY 439843004842 osmY Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117476.1 4672291 D 439843 CDS YP_002117477.1 194736467 4673037..4673198 1 NC_011094.1 identified by glimmer; hypothetical protein 4673198 439843004843 SeSA_A4816 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117477.1 4673037 D 439843 CDS YP_002117478.1 194736460 4673322..4674395 1 NC_011094.1 identified by match to protein family HMM PF01734; patatin 4674395 439843004844 SeSA_A4817 Salmonella enterica subsp. enterica serovar Schwarzengrund str. patatin YP_002117478.1 4673322 D 439843 CDS YP_002117479.1 194737126 4674392..4675165 1 NC_011094.1 identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4675165 439843004845 SeSA_A4818 Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribonuclease YjjV YP_002117479.1 4674392 D 439843 CDS YP_002117480.1 194736787 complement(4675198..4676061) 1 NC_011094.1 identified by match to protein family HMM PF04055; pyruvate formate lyase activating enzyme 4676061 439843004846 SeSA_A4819 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pyruvate formate lyase activating enzyme YP_002117480.1 4675198 R 439843 CDS YP_002117481.1 194735927 complement(4676033..4677583) 1 NC_011094.1 hypothetical protein 4677583 439843004847 SeSA_A4820 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117481.1 4676033 R 439843 CDS YP_002117482.1 194734391 4677807..4678622 1 NC_011094.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4678622 deoC 439843004848 deoC Salmonella enterica subsp. enterica serovar Schwarzengrund str. deoxyribose-phosphate aldolase YP_002117482.1 4677807 D 439843 CDS YP_002117483.1 194734315 4678746..4680068 1 NC_011094.1 'Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate'; thymidine phosphorylase 4680068 deoA 439843004849 deoA Salmonella enterica subsp. enterica serovar Schwarzengrund str. thymidine phosphorylase YP_002117483.1 4678746 D 439843 CDS YP_002117484.1 194735001 4680120..4681343 1 NC_011094.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4681343 deoB 439843004850 deoB Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphopentomutase YP_002117484.1 4680120 D 439843 CDS YP_002117485.1 194737296 4681553..4682272 1 NC_011094.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4682272 deoD 439843004851 deoD Salmonella enterica subsp. enterica serovar Schwarzengrund str. purine nucleoside phosphorylase YP_002117485.1 4681553 D 439843 CDS YP_002117486.1 194737946 4682479..4682970 1 NC_011094.1 transposase and inactivated derivative 4682970 439843004852 SeSA_A4825 Salmonella enterica subsp. enterica serovar Schwarzengrund str. transposase and inactivated derivative YP_002117486.1 4682479 D 439843 CDS YP_002117487.1 194738101 complement(4683055..4684071) 1 NC_011094.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4684071 lplA 439843004853 lplA Salmonella enterica subsp. enterica serovar Schwarzengrund str. lipoate-protein ligase A YP_002117487.1 4683055 R 439843 CDS YP_002117488.1 194735046 complement(4684105..4684749) 1 NC_011094.1 hypothetical protein 4684749 439843004854 SeSA_A4828 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117488.1 4684105 R 439843 CDS YP_002117489.1 194736379 4684866..4685834 1 NC_011094.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4685834 serB 439843004856 serB Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoserine phosphatase YP_002117489.1 4684866 D 439843 CDS YP_002117490.1 194737472 4685918..4687300 1 NC_011094.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4687300 radA 439843004857 radA Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA repair protein RadA YP_002117490.1 4685918 D 439843 CDS YP_002117491.1 194738086 4687451..4688683 1 NC_011094.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4688683 439843004858 SeSA_A4831 Salmonella enterica subsp. enterica serovar Schwarzengrund str. nicotinamide-nucleotide adenylyltransferase YP_002117491.1 4687451 D 439843 CDS YP_002117492.1 194738154 complement(4688801..4690468) 1 NC_011094.1 'ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence'; ABC transporter ATP-binding protein 4690468 439843004859 SeSA_A4832 Salmonella enterica subsp. enterica serovar Schwarzengrund str. ABC transporter ATP-binding protein YP_002117492.1 4688801 R 439843 CDS YP_002117493.1 194734270 4690677..4692614 1 NC_011094.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4692614 439843004860 SeSA_A4833 Salmonella enterica subsp. enterica serovar Schwarzengrund str. lytic murein transglycosylase YP_002117493.1 4690677 D 439843 CDS YP_002117494.1 194735421 4692672..4692998 1 NC_011094.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4692998 trpR 439843004861 trpR Salmonella enterica subsp. enterica serovar Schwarzengrund str. Trp operon repressor YP_002117494.1 4692672 D 439843 CDS YP_002117495.1 194736169 complement(4693100..4693615) 1 NC_011094.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4693615 439843004862 SeSA_A4835 Salmonella enterica subsp. enterica serovar Schwarzengrund str. NTPase YP_002117495.1 4693100 R 439843 CDS YP_002117496.1 194737068 4693664..4694311 1 NC_011094.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4694311 439843004863 SeSA_A4836 Salmonella enterica subsp. enterica serovar Schwarzengrund str. phosphoglycerate mutase YP_002117496.1 4693664 D 439843 CDS YP_002117497.1 194736225 complement(4694308..4695177) 1 NC_011094.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein 4695177 rob 439843004864 rob Salmonella enterica subsp. enterica serovar Schwarzengrund str. right origin-binding protein YP_002117497.1 4694308 R 439843 CDS YP_002117498.1 194736465 4695374..4695862 1 NC_011094.1 identified by match to protein family HMM PF05981; hypothetical protein 4695862 439843004865 SeSA_A4838 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117498.1 4695374 D 439843 CDS YP_002117499.1 194737123 4695875..4696564 1 NC_011094.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4696564 439843004866 SeSA_A4839 Salmonella enterica subsp. enterica serovar Schwarzengrund str. DNA-binding response regulator CreB YP_002117499.1 4695875 D 439843 CDS YP_002117500.1 194735190 4696564..4697988 1 NC_011094.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4697988 439843004867 SeSA_A4840 Salmonella enterica subsp. enterica serovar Schwarzengrund str. sensory histidine kinase CreC YP_002117500.1 4696564 D 439843 CDS YP_002117501.1 194735853 4698046..4699395 1 NC_011094.1 identified by match to protein family HMM PF06123; hypothetical protein 4699395 439843004868 SeSA_A4841 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117501.1 4698046 D 439843 CDS YP_002117502.1 194734567 complement(4699453..4700538) 1 NC_011094.1 identified by match to protein family HMM PF00419; major fimbrial protein 4700538 439843004869 SeSA_A4842 Salmonella enterica subsp. enterica serovar Schwarzengrund str. major fimbrial protein YP_002117502.1 4699453 R 439843 CDS YP_002117503.1 194735248 complement(4700580..4701137) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial protein 4701137 439843004870 SeSA_A4843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial protein YP_002117503.1 4700580 R 439843 CDS YP_002117504.2 449306345 complement(4701155..4703692) 1 NC_011094.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 4703692 439843004871 SeSA_A4844 Salmonella enterica subsp. enterica serovar Schwarzengrund str. outer membrane usher protein SfmD YP_002117504.2 4701155 R 439843 CDS YP_002117505.1 194733946 complement(4703738..4704421) 1 NC_011094.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone 4704421 439843004872 SeSA_A4845 Salmonella enterica subsp. enterica serovar Schwarzengrund str. pili assembly chaperone YP_002117505.1 4703738 R 439843 CDS YP_002117506.1 194737130 complement(4704492..4705037) 1 NC_011094.1 identified by match to protein family HMM PF00419; fimbrial chaperone 4705037 439843004873 SeSA_A4846 Salmonella enterica subsp. enterica serovar Schwarzengrund str. fimbrial chaperone YP_002117506.1 4704492 R 439843 CDS YP_002117507.1 194735147 complement(4705376..4706047) 1 NC_011094.1 hypothetical protein 4706047 439843004874 SeSA_A4847 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_002117507.1 4705376 R 439843 CDS YP_008119817.1 513549436 complement(4706432..4706746) 1 NC_011094.1 hypothetical protein 4706746 439843004875 SeSA_A4848 Salmonella enterica subsp. enterica serovar Schwarzengrund str. hypothetical protein YP_008119817.1 4706432 R 439843 CDS YP_002117508.1 194734189 complement(4707013..4707729) 1 NC_011094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 4707729 arcA 439843004876 arcA Salmonella enterica subsp. enterica serovar Schwarzengrund str. two-component response regulator YP_002117508.1 4707013 R 439843 CDS YP_002117509.1 194736168 4708440..4709051 1 NC_011094.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4709051 439843004877 SeSA_A4850 Salmonella enterica subsp. enterica serovar Schwarzengrund str. RNA methyltransferase YP_002117509.1 4708440 D 439843 CDS