-- dump date 20140620_040931 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 375451000001 SEQ_END SEQ_END NC_008209.1 4133097 4133097 DR NC_008209.1; contig end 4133097..4133097 Roseobacter denitrificans OCh 114 375451000002 SEQ_END SEQ_END NC_008386.1 106469 106469 DR NC_008386.1; contig end 106469..106469 Roseobacter denitrificans OCh 114 375451000003 SEQ_END SEQ_END NC_008387.1 69269 69269 DR NC_008387.1; contig end 69269..69269 Roseobacter denitrificans OCh 114 375451000004 SEQ_END SEQ_END NC_008388.1 16575 16575 DR NC_008388.1; contig end 16575..16575 Roseobacter denitrificans OCh 114 375451000005 SEQ_END SEQ_END NC_008389.1 5824 5824 DR NC_008389.1; contig end 5824..5824 Roseobacter denitrificans OCh 114 YP_680429.1 CDS RD1_0003 NC_008209.1 1723 2871 D glycine cleavage system protein T 1723..2871 Roseobacter denitrificans OCh 114 4198060 YP_680430.1 CDS RD1_0004 NC_008209.1 2948 3556 D hypothetical protein 2948..3556 Roseobacter denitrificans OCh 114 4198467 YP_680431.1 CDS vanB NC_008209.1 3553 4539 D vanillate O-demethylase 3553..4539 Roseobacter denitrificans OCh 114 4198468 YP_680432.1 CDS RD1_0006 NC_008209.1 4551 5618 D hypothetical protein 4551..5618 Roseobacter denitrificans OCh 114 4198469 YP_680433.1 CDS RD1_0007 NC_008209.1 5659 6306 R DNA-binding protein complement(5659..6306) Roseobacter denitrificans OCh 114 4198470 YP_680434.1 CDS araC NC_008209.1 6341 7435 D AraC family transcriptional regulator 6341..7435 Roseobacter denitrificans OCh 114 4198471 YP_680435.1 CDS soxG NC_008209.1 7540 8100 R sarcosine oxidase, gamma subunit complement(7540..8100) Roseobacter denitrificans OCh 114 4198472 YP_680436.1 CDS soxA NC_008209.1 8093 11044 R sarcosine oxidase, alpha subunit complement(8093..11044) Roseobacter denitrificans OCh 114 4198473 YP_680437.1 CDS soxD NC_008209.1 11041 11328 R sarcosine oxidase subunit delta complement(11041..11328) Roseobacter denitrificans OCh 114 4198474 YP_680438.1 CDS soxB NC_008209.1 11341 12591 R sarcosine oxidase, beta subunit complement(11341..12591) Roseobacter denitrificans OCh 114 4198475 YP_680439.1 CDS opuAC NC_008209.1 12850 13797 D glycine betaine transporter substrate-binding protein 12850..13797 Roseobacter denitrificans OCh 114 4198476 YP_680440.1 CDS opuAA NC_008209.1 13879 14913 D glycine betaine transporter ATP-binding protein 13879..14913 Roseobacter denitrificans OCh 114 4198477 YP_680441.1 CDS opuAB NC_008209.1 14913 16892 D glycine betaine transporter permease 14913..16892 Roseobacter denitrificans OCh 114 4198478 YP_680442.1 CDS rluA NC_008209.1 16992 17639 R ribosomal large subunit pseudouridine synthase A complement(16992..17639) Roseobacter denitrificans OCh 114 4198479 YP_680443.1 CDS RD1_0017 NC_008209.1 17670 20117 R FAD dependent oxidoreductase complement(17670..20117) Roseobacter denitrificans OCh 114 4198480 YP_680444.1 CDS RD1_0018 NC_008209.1 20147 21037 R homocysteine S-methyltransferase complement(20147..21037) Roseobacter denitrificans OCh 114 4198481 YP_680445.1 CDS RD1_0019 NC_008209.1 21034 23484 R dimethylglycine dehydrogenase complement(21034..23484) Roseobacter denitrificans OCh 114 4198482 YP_680446.1 CDS RD1_0020 NC_008209.1 23486 23650 R hypothetical protein complement(23486..23650) Roseobacter denitrificans OCh 114 4198483 YP_680447.1 CDS RD1_0021 NC_008209.1 23619 24242 R homoserine/lactone efflux protein complement(23619..24242) Roseobacter denitrificans OCh 114 4198484 YP_680448.1 CDS RD1_0022 NC_008209.1 24239 24811 R DNA-binding protein complement(24239..24811) Roseobacter denitrificans OCh 114 4198485 YP_680449.1 CDS RD1_0023 NC_008209.1 24803 24910 D hypothetical protein 24803..24910 Roseobacter denitrificans OCh 114 4198486 YP_680450.1 CDS RD1_0024 NC_008209.1 24931 25386 R hypothetical protein complement(24931..25386) Roseobacter denitrificans OCh 114 4195713 YP_680451.1 CDS RD1_0025 NC_008209.1 25435 26607 R thiolase domain-containing protein complement(25435..26607) Roseobacter denitrificans OCh 114 4195714 YP_680452.1 CDS RD1_0026 NC_008209.1 26690 27043 D anti-anti-sigma factor 26690..27043 Roseobacter denitrificans OCh 114 4195715 YP_680453.1 CDS rsbW NC_008209.1 27055 27501 D serine-protein kinase 27055..27501 Roseobacter denitrificans OCh 114 4195716 YP_680454.1 CDS ggtA NC_008209.1 27764 29341 D gamma-glutamyltranspeptidase 27764..29341 Roseobacter denitrificans OCh 114 4195717 YP_680455.1 CDS RD1_0029 NC_008209.1 29350 29676 R hypothetical protein complement(29350..29676) Roseobacter denitrificans OCh 114 4195718 YP_680456.1 CDS RD1_0030 NC_008209.1 29762 30643 D auxin efflux carrier family protein 29762..30643 Roseobacter denitrificans OCh 114 4195719 YP_680457.1 CDS RD1_0031 NC_008209.1 30714 31298 D lipoprotein 30714..31298 Roseobacter denitrificans OCh 114 4195720 YP_680458.1 CDS lolA NC_008209.1 31304 31864 R outer membrane lipoprotein carrier protein complement(31304..31864) Roseobacter denitrificans OCh 114 4195721 YP_680459.1 CDS ftsK NC_008209.1 32002 34818 R cell division protein FtsK complement(32002..34818) Roseobacter denitrificans OCh 114 4195722 YP_680460.1 CDS RD1_0034 NC_008209.1 34824 36002 R aminotransferase complement(34824..36002) Roseobacter denitrificans OCh 114 4195723 YP_680461.1 CDS RD1_0035 NC_008209.1 36111 37439 R amidase complement(36111..37439) Roseobacter denitrificans OCh 114 4195724 YP_680462.1 CDS ubiH NC_008209.1 37491 38753 D 2-octaprenyl-6-methoxyphenol hydroxylase 37491..38753 Roseobacter denitrificans OCh 114 4195725 YP_680463.1 CDS RD1_0037 NC_008209.1 38853 39038 R hypothetical protein complement(38853..39038) Roseobacter denitrificans OCh 114 4195726 YP_680464.1 CDS lonD NC_008209.1 39035 39679 R ATP-dependent protease La complement(39035..39679) Roseobacter denitrificans OCh 114 4195727 YP_680465.1 CDS trx NC_008209.1 39707 40624 R thioredoxin complement(39707..40624) Roseobacter denitrificans OCh 114 4195728 YP_680466.1 CDS xth NC_008209.1 40679 41467 R exodeoxyribonuclease III complement(40679..41467) Roseobacter denitrificans OCh 114 4195729 YP_680467.1 CDS mtrA NC_008209.1 41728 42414 R DNA-binding response regulator complement(41728..42414) Roseobacter denitrificans OCh 114 4195730 YP_680468.1 CDS ribA NC_008209.1 42577 43665 D GTP cyclohydrolase II 42577..43665 Roseobacter denitrificans OCh 114 4195731 YP_680469.1 CDS RD1_0044 NC_008209.1 43662 44156 D hypothetical protein 43662..44156 Roseobacter denitrificans OCh 114 4198487 YP_680470.1 CDS RD1_0046 NC_008209.1 44164 44820 R hypothetical protein complement(44164..44820) Roseobacter denitrificans OCh 114 4198488 YP_680471.1 CDS RD1_0047 NC_008209.1 44919 45881 R outer membrane porin complement(44919..45881) Roseobacter denitrificans OCh 114 4198489 YP_680472.1 CDS RD1_0048 NC_008209.1 46129 46620 D hypothetical protein 46129..46620 Roseobacter denitrificans OCh 114 4198490 YP_680473.1 CDS leuS NC_008209.1 46734 49280 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 46734..49280 Roseobacter denitrificans OCh 114 4198491 YP_680474.1 CDS RD1_0050 NC_008209.1 49267 49746 D lipoprotein 49267..49746 Roseobacter denitrificans OCh 114 4198492 YP_680475.1 CDS RD1_0052 NC_008209.1 49743 50744 D hypothetical protein 49743..50744 Roseobacter denitrificans OCh 114 4198493 YP_680476.1 CDS RD1_0053 NC_008209.1 50763 51347 D glutathione S-transferase family protein 50763..51347 Roseobacter denitrificans OCh 114 4198494 YP_680477.1 CDS RD1_0054 NC_008209.1 51326 52510 R hypothetical protein complement(51326..52510) Roseobacter denitrificans OCh 114 4198495 YP_680478.1 CDS RD1_0055 NC_008209.1 52507 53841 R mechanosensitive ion channel family protein complement(52507..53841) Roseobacter denitrificans OCh 114 4198496 YP_680479.1 CDS RD1_0056 NC_008209.1 53945 55948 R hydantoinase/oxoprolinase complement(53945..55948) Roseobacter denitrificans OCh 114 4198497 YP_680480.1 CDS RD1_0057 NC_008209.1 56013 57056 R 4Fe-4S ferredoxin complement(56013..57056) Roseobacter denitrificans OCh 114 4198498 YP_680481.1 CDS RD1_0058 NC_008209.1 57069 57734 R glutathione S-transferase domain-containing protein complement(57069..57734) Roseobacter denitrificans OCh 114 4198499 YP_680482.1 CDS mtgA NC_008209.1 57790 58455 R monofunctional biosynthetic peptidoglycan transglycosylase complement(57790..58455) Roseobacter denitrificans OCh 114 4198500 YP_680483.1 CDS gltB NC_008209.1 58565 63094 R glutamate synthase, large subunit complement(58565..63094) Roseobacter denitrificans OCh 114 4198501 YP_680484.1 CDS RD1_0061 NC_008209.1 63091 63525 R hypothetical protein complement(63091..63525) Roseobacter denitrificans OCh 114 4198502 YP_680485.1 CDS RD1_0062 NC_008209.1 63522 63956 R hypothetical protein complement(63522..63956) Roseobacter denitrificans OCh 114 4198503 YP_680486.1 CDS gltD NC_008209.1 64087 65520 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(64087..65520) Roseobacter denitrificans OCh 114 4198504 YP_680487.1 CDS uppP NC_008209.1 65746 66549 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 65746..66549 Roseobacter denitrificans OCh 114 4198505 YP_680488.1 CDS RD1_0065 NC_008209.1 66546 67529 R NADH-ubiquinone oxidoreductase complement(66546..67529) Roseobacter denitrificans OCh 114 4198506 YP_680489.1 CDS RD1_0067 NC_008209.1 68288 69538 R sulfatase complement(68288..69538) Roseobacter denitrificans OCh 114 4198313 YP_680490.1 CDS RD1_0068 NC_008209.1 69950 70813 R hypothetical protein complement(69950..70813) Roseobacter denitrificans OCh 114 4198314 YP_680491.1 CDS RD1_0069 NC_008209.1 70868 72958 R mechanosensitive ion channel protein complement(70868..72958) Roseobacter denitrificans OCh 114 4198315 YP_680492.1 CDS RD1_0070 NC_008209.1 73014 73127 D hypothetical protein 73014..73127 Roseobacter denitrificans OCh 114 4198316 YP_680493.1 CDS RD1_0071 NC_008209.1 73785 74429 R hypothetical protein complement(73785..74429) Roseobacter denitrificans OCh 114 4198317 YP_680494.1 CDS RD1_0072 NC_008209.1 74433 75839 R 4Fe-4S ferredoxin complement(74433..75839) Roseobacter denitrificans OCh 114 4198318 YP_680495.1 CDS RD1_0073 NC_008209.1 75850 76620 R hypothetical protein complement(75850..76620) Roseobacter denitrificans OCh 114 4198319 YP_680496.1 CDS dld NC_008209.1 76746 78467 R component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase complement(76746..78467) Roseobacter denitrificans OCh 114 4198320 YP_680497.1 CDS RD1_0075 NC_008209.1 78658 79296 D paraquat-inducible protein A 78658..79296 Roseobacter denitrificans OCh 114 4198321 YP_680498.1 CDS RD1_0076 NC_008209.1 79254 79913 D paraquat-inducible protein A 79254..79913 Roseobacter denitrificans OCh 114 4198322 YP_680499.1 CDS pqiB NC_008209.1 79906 81987 D paraquat-inducible protein B 79906..81987 Roseobacter denitrificans OCh 114 4198323 YP_680500.1 CDS RD1_0078 NC_008209.1 81988 82548 D lipoprotein 81988..82548 Roseobacter denitrificans OCh 114 4198324 YP_680501.1 CDS RD1_0079 NC_008209.1 82648 83775 R aminotransferase complement(82648..83775) Roseobacter denitrificans OCh 114 4198325 YP_680502.1 CDS RD1_0080 NC_008209.1 83827 84579 D hypothetical protein 83827..84579 Roseobacter denitrificans OCh 114 4198326 YP_680503.1 CDS RD1_0081 NC_008209.1 84576 84767 R hypothetical protein complement(84576..84767) Roseobacter denitrificans OCh 114 4198327 YP_680504.1 CDS RD1_0082 NC_008209.1 84780 84938 R hypothetical protein complement(84780..84938) Roseobacter denitrificans OCh 114 4198328 YP_680505.1 CDS RD1_0083 NC_008209.1 84933 86558 D glutamate synthase 84933..86558 Roseobacter denitrificans OCh 114 4198329 YP_680506.1 CDS RD1_0084 NC_008209.1 86744 88468 R sensor histidine kinase complement(86744..88468) Roseobacter denitrificans OCh 114 4198099 YP_680507.1 CDS RD1_0085 NC_008209.1 88470 89027 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(88470..89027) Roseobacter denitrificans OCh 114 4198100 YP_680508.1 CDS RD1_0086 NC_008209.1 89024 89191 R hypothetical protein complement(89024..89191) Roseobacter denitrificans OCh 114 4198101 YP_680509.1 CDS tcrX NC_008209.1 89289 90098 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 89289..90098 Roseobacter denitrificans OCh 114 4198102 YP_680510.1 CDS RD1_0088 NC_008209.1 90109 91029 R ribonuclease BN complement(90109..91029) Roseobacter denitrificans OCh 114 4198103 YP_680511.1 CDS RD1_0089 NC_008209.1 91266 92525 D aminotransferase 91266..92525 Roseobacter denitrificans OCh 114 4198104 YP_680512.1 CDS dapE NC_008209.1 92563 93852 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 92563..93852 Roseobacter denitrificans OCh 114 4198105 YP_680513.1 CDS panC NC_008209.1 93937 94791 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(93937..94791) Roseobacter denitrificans OCh 114 4198106 YP_680514.1 CDS panB NC_008209.1 94788 95627 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(94788..95627) Roseobacter denitrificans OCh 114 4198107 YP_680515.1 CDS RD1_0094 NC_008209.1 95873 96634 D hypothetical protein 95873..96634 Roseobacter denitrificans OCh 114 4198108 YP_680516.1 CDS RD1_0095 NC_008209.1 96769 97056 D hypothetical protein 96769..97056 Roseobacter denitrificans OCh 114 4198109 YP_680517.1 CDS RD1_0096 NC_008209.1 97134 98264 R acetoin utilization protein complement(97134..98264) Roseobacter denitrificans OCh 114 4198110 YP_680518.1 CDS RD1_0097 NC_008209.1 98445 98945 D GNAT family acetyltransferase 98445..98945 Roseobacter denitrificans OCh 114 4198111 YP_680519.1 CDS fabG NC_008209.1 98961 99707 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 98961..99707 Roseobacter denitrificans OCh 114 4198112 YP_680520.1 CDS RD1_0099 NC_008209.1 99704 100054 D hypothetical protein 99704..100054 Roseobacter denitrificans OCh 114 4198113 YP_680521.1 CDS RD1_0100 NC_008209.1 100056 101048 D T4 family peptidase 100056..101048 Roseobacter denitrificans OCh 114 4198114 YP_680522.1 CDS dxs NC_008209.1 101045 102982 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(101045..102982) Roseobacter denitrificans OCh 114 4198115 YP_680523.1 CDS pufC NC_008209.1 103204 104319 R photosynthetic reaction center cytochrome c subunit complement(103204..104319) Roseobacter denitrificans OCh 114 4198116 YP_680524.1 CDS pufM NC_008209.1 104322 105317 R photosynthetic reaction center subunit M complement(104322..105317) Roseobacter denitrificans OCh 114 4198117 YP_680525.1 CDS pufL NC_008209.1 105319 106170 R photosynthetic reaction center subunit L complement(105319..106170) Roseobacter denitrificans OCh 114 4198118 YP_680526.1 CDS RD1_0105 NC_008209.1 106185 106316 D hypothetical protein 106185..106316 Roseobacter denitrificans OCh 114 4198507 YP_680527.1 CDS pufA NC_008209.1 106396 106554 R light-harvesting protein B-875, alpha chain complement(106396..106554) Roseobacter denitrificans OCh 114 4198508 YP_680528.1 CDS pufB NC_008209.1 106567 106719 R light-harvesting protein B-875, beta chain complement(106567..106719) Roseobacter denitrificans OCh 114 4198509 YP_680529.1 CDS pufQ NC_008209.1 106901 107134 R protein pufQ complement(106901..107134) Roseobacter denitrificans OCh 114 4198510 YP_680530.1 CDS bchZ NC_008209.1 107152 108627 R chlorophyllide reductase subunit Z complement(107152..108627) Roseobacter denitrificans OCh 114 4198511 YP_680531.1 CDS bchY NC_008209.1 108716 110245 R chlorophyllide reductase subunit Y complement(108716..110245) Roseobacter denitrificans OCh 114 4198512 YP_680532.1 CDS bchX NC_008209.1 110444 111448 R chlorophyllide reductase subunit X complement(110444..111448) Roseobacter denitrificans OCh 114 4198513 YP_680533.1 CDS bchC NC_008209.1 111445 112386 R 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase complement(111445..112386) Roseobacter denitrificans OCh 114 4198514 YP_680534.1 CDS crtF NC_008209.1 112514 113620 R hydroxyneurosporene methyltransferase complement(112514..113620) Roseobacter denitrificans OCh 114 4198515 YP_680535.1 CDS crtE NC_008209.1 113634 114518 R geranylgeranyl pyrophosphate synthetase complement(113634..114518) Roseobacter denitrificans OCh 114 4198516 YP_680536.1 CDS crtD NC_008209.1 114612 116162 D methoxyneurosporene dehydrogenase 114612..116162 Roseobacter denitrificans OCh 114 4198517 YP_680537.1 CDS crtC NC_008209.1 116012 117031 D hydroxyneurosporene dehydrogenase 116012..117031 Roseobacter denitrificans OCh 114 4198518 YP_680538.1 CDS RD1_0117 NC_008209.1 117165 117887 D hypothetical protein 117165..117887 Roseobacter denitrificans OCh 114 4198519 YP_680539.1 CDS crtK NC_008209.1 117907 118389 R CrtK protein complement(117907..118389) Roseobacter denitrificans OCh 114 4198520 YP_680540.1 CDS crtB NC_008209.1 118413 119432 R phytoene synthase complement(118413..119432) Roseobacter denitrificans OCh 114 4198521 YP_680541.1 CDS ctrI NC_008209.1 119429 120976 R phytoene dehydrogenase complement(119429..120976) Roseobacter denitrificans OCh 114 4198522 YP_680542.1 CDS crtA NC_008209.1 121082 121798 D spheroidene monooxygenase 121082..121798 Roseobacter denitrificans OCh 114 4198523 YP_680543.1 CDS bchI NC_008209.1 121795 122799 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit I 121795..122799 Roseobacter denitrificans OCh 114 4198524 YP_680544.1 CDS bchD NC_008209.1 122796 124454 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 122796..124454 Roseobacter denitrificans OCh 114 4198525 YP_680545.1 CDS bchO NC_008209.1 124455 125327 D magnesium-chelatase 30 kDa subunit 124455..125327 Roseobacter denitrificans OCh 114 4198388 YP_680546.1 CDS RD1_0125 NC_008209.1 125483 125716 R hypothetical protein complement(125483..125716) Roseobacter denitrificans OCh 114 4198389 YP_680547.1 CDS cycA NC_008209.1 125920 126339 R cytochrome c-551 complement(125920..126339) Roseobacter denitrificans OCh 114 4198390 YP_680548.1 CDS hemA NC_008209.1 126413 127627 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(126413..127627) Roseobacter denitrificans OCh 114 4198391 YP_680549.1 CDS puhE NC_008209.1 127617 128438 R PuhE protein complement(127617..128438) Roseobacter denitrificans OCh 114 4198392 YP_680550.1 CDS acsF NC_008209.1 128440 129477 R oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase complement(128440..129477) Roseobacter denitrificans OCh 114 4198393 YP_680551.1 CDS RD1_0130 NC_008209.1 129552 129848 R hypothetical protein complement(129552..129848) Roseobacter denitrificans OCh 114 4198394 YP_680552.1 CDS puhC NC_008209.1 129869 130336 R PuhC protein complement(129869..130336) Roseobacter denitrificans OCh 114 4198395 YP_680553.1 CDS puhB NC_008209.1 130342 130980 R photosynthetic complex assembly protein complement(130342..130980) Roseobacter denitrificans OCh 114 4198396 YP_680554.1 CDS puhA NC_008209.1 131068 131835 R photosynthetic reaction center subunit H complement(131068..131835) Roseobacter denitrificans OCh 114 4198397 YP_680555.1 CDS lhaA NC_008209.1 131858 133291 R LhaA protein complement(131858..133291) Roseobacter denitrificans OCh 114 4198398 YP_680556.1 CDS bchM NC_008209.1 133288 134016 R catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase complement(133288..134016) Roseobacter denitrificans OCh 114 4198399 YP_680557.1 CDS chlL NC_008209.1 134016 134915 R light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein complement(134016..134915) Roseobacter denitrificans OCh 114 4198400 YP_680558.1 CDS bchH NC_008209.1 134968 138540 R involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H complement(134968..138540) Roseobacter denitrificans OCh 114 4198401 YP_680559.1 CDS bchB NC_008209.1 138530 140071 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B complement(138530..140071) Roseobacter denitrificans OCh 114 4198402 YP_680560.1 CDS bchN NC_008209.1 140068 141354 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N complement(140068..141354) Roseobacter denitrificans OCh 114 4198403 YP_680561.1 CDS bchF NC_008209.1 141351 141875 R 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(141351..141875) Roseobacter denitrificans OCh 114 4198404 YP_680562.1 CDS ppa NC_008209.1 142189 142971 D regulatory protein Ppa 142189..142971 Roseobacter denitrificans OCh 114 4198405 YP_680563.1 CDS ppsR NC_008209.1 142968 144395 D transcriptional regulator PpsR 142968..144395 Roseobacter denitrificans OCh 114 4198406 YP_680564.1 CDS bchG NC_008209.1 144450 145349 D bacteriochlorophyll/chlorophyll a synthase 144450..145349 Roseobacter denitrificans OCh 114 4198407 YP_680565.1 CDS RD1_0145 NC_008209.1 145349 146647 D PucC family protein 145349..146647 Roseobacter denitrificans OCh 114 4198197 YP_680566.1 CDS bchP NC_008209.1 146652 147830 D geranylgeranyl hydrogenase 146652..147830 Roseobacter denitrificans OCh 114 4198198 YP_680567.1 CDS idi NC_008209.1 147827 148357 D isopentyl-diphosphate delta-isomerase 147827..148357 Roseobacter denitrificans OCh 114 4198199 YP_680568.1 CDS RD1_0148 NC_008209.1 148820 149530 D transglycosylase 148820..149530 Roseobacter denitrificans OCh 114 4198200 YP_680569.1 CDS flhA NC_008209.1 149533 151617 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 149533..151617 Roseobacter denitrificans OCh 114 4198201 YP_680570.1 CDS fliR NC_008209.1 151614 152384 D flagellar biosynthetic protein FliR 151614..152384 Roseobacter denitrificans OCh 114 4198202 YP_680571.1 CDS flhB NC_008209.1 152381 153469 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 152381..153469 Roseobacter denitrificans OCh 114 4198203 YP_680572.1 CDS RD1_0153 NC_008209.1 153466 153861 D hypothetical protein 153466..153861 Roseobacter denitrificans OCh 114 4198204 YP_680573.1 CDS RD1_0154 NC_008209.1 154208 154609 R integrase catalytic subunit complement(154208..154609) Roseobacter denitrificans OCh 114 4198205 YP_680574.1 CDS RD1_0155 NC_008209.1 155014 155277 R hypothetical protein complement(155014..155277) Roseobacter denitrificans OCh 114 4198206 YP_680575.1 CDS RD1_0156 NC_008209.1 155374 156426 R hypothetical protein complement(155374..156426) Roseobacter denitrificans OCh 114 4198207 YP_680576.1 CDS RD1_0157 NC_008209.1 156373 156639 D hypothetical protein 156373..156639 Roseobacter denitrificans OCh 114 4198208 YP_680577.2 CDS RD1_0158 NC_008209.1 156675 157487 D integrase catalytic subunit 156675..157487 Roseobacter denitrificans OCh 114 4198209 YP_680578.1 CDS flaF NC_008209.1 159558 159929 R acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF complement(159558..159929) Roseobacter denitrificans OCh 114 4198210 YP_680579.1 CDS RD1_0160 NC_008209.1 160000 161250 R hypothetical protein complement(160000..161250) Roseobacter denitrificans OCh 114 4198211 YP_680580.1 CDS RD1_0161 NC_008209.1 161459 161818 R hypothetical protein complement(161459..161818) Roseobacter denitrificans OCh 114 4198212 YP_680581.1 CDS cheL NC_008209.1 161811 162113 R chemotactic signal-response protein complement(161811..162113) Roseobacter denitrificans OCh 114 4198213 YP_680582.1 CDS RD1_0163 NC_008209.1 162209 163546 D flagellar hook-length control protein 162209..163546 Roseobacter denitrificans OCh 114 4198214 YP_680583.1 CDS flgD NC_008209.1 163556 164236 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of many flagellar genes; the Rhodobacter protein in this cluster is associated with a set of flagellar genes acquired by lateral gene transfer; these genes are not normally expressed; flagellar basal body rod modification protein 163556..164236 Roseobacter denitrificans OCh 114 4198215 YP_680584.1 CDS RD1_0165 NC_008209.1 164233 165567 R oxidoreductase complement(164233..165567) Roseobacter denitrificans OCh 114 4197924 YP_680585.1 CDS potI NC_008209.1 165567 166385 R putrescine ABC transporter permease complement(165567..166385) Roseobacter denitrificans OCh 114 4197925 YP_680586.1 CDS potH NC_008209.1 166382 167257 R putrescine ABC transporter permease complement(166382..167257) Roseobacter denitrificans OCh 114 4197926 YP_680587.1 CDS potG NC_008209.1 167295 168422 R putrescine ABC transporter ATP-binding protein complement(167295..168422) Roseobacter denitrificans OCh 114 4197927 YP_680588.1 CDS potF NC_008209.1 168502 169584 R putrescine ABC transporter substrate-binding protein complement(168502..169584) Roseobacter denitrificans OCh 114 4197928 YP_680589.1 CDS RD1_0171 NC_008209.1 169773 170432 D transcriptional regulator 169773..170432 Roseobacter denitrificans OCh 114 4197929 YP_680590.1 CDS RD1_0172 NC_008209.1 170510 171907 D aminotransferase 170510..171907 Roseobacter denitrificans OCh 114 4197930 YP_680591.1 CDS RD1_0173 NC_008209.1 172145 173260 D polyamine ABC transporter ATP-binding protein 172145..173260 Roseobacter denitrificans OCh 114 4197931 YP_680592.1 CDS RD1_0175 NC_008209.1 173380 174486 D ABC transporter substrate-binding protein 173380..174486 Roseobacter denitrificans OCh 114 4197932 YP_680593.1 CDS RD1_0178 NC_008209.1 174559 174846 D hypothetical protein 174559..174846 Roseobacter denitrificans OCh 114 4197933 YP_680594.1 CDS RD1_0179 NC_008209.1 174850 176490 D ABC transporter permease 174850..176490 Roseobacter denitrificans OCh 114 4197934 YP_680595.1 CDS RD1_0180 NC_008209.1 176830 177672 D ABC transporter permease 176830..177672 Roseobacter denitrificans OCh 114 4197935 YP_680596.1 CDS RD1_0181 NC_008209.1 177764 179119 R transglycosylase complement(177764..179119) Roseobacter denitrificans OCh 114 4197936 YP_680597.1 CDS RD1_0182 NC_008209.1 179316 180008 D hypothetical protein 179316..180008 Roseobacter denitrificans OCh 114 4197937 YP_680598.1 CDS rnr NC_008209.1 180005 182260 R ribonuclease R complement(180005..182260) Roseobacter denitrificans OCh 114 4197938 YP_680599.1 CDS RD1_0184 NC_008209.1 182266 182865 R hypothetical protein complement(182266..182865) Roseobacter denitrificans OCh 114 4197939 YP_680600.1 CDS dapE NC_008209.1 182862 184007 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(182862..184007) Roseobacter denitrificans OCh 114 4197940 YP_680601.1 CDS RD1_0186 NC_008209.1 184075 184428 R hypothetical protein complement(184075..184428) Roseobacter denitrificans OCh 114 4197941 YP_680602.1 CDS RD1_0187 NC_008209.1 184438 185316 R hypothetical protein complement(184438..185316) Roseobacter denitrificans OCh 114 4197942 YP_680603.1 CDS RD1_0188 NC_008209.1 185318 185413 D hypothetical protein 185318..185413 Roseobacter denitrificans OCh 114 4197943 YP_680604.1 CDS dapD NC_008209.1 185454 186281 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(185454..186281) Roseobacter denitrificans OCh 114 4198178 YP_680605.1 CDS RD1_0190 NC_008209.1 186453 187289 D hypothetical protein 186453..187289 Roseobacter denitrificans OCh 114 4198179 YP_680606.1 CDS RD1_0191 NC_008209.1 187382 188122 R protein-disulfide isomerase complement(187382..188122) Roseobacter denitrificans OCh 114 4198180 YP_680607.1 CDS RD1_0192 NC_008209.1 188122 189306 R hypothetical protein complement(188122..189306) Roseobacter denitrificans OCh 114 4198181 YP_680608.1 CDS RD1_0193 NC_008209.1 189417 189947 R hypothetical protein complement(189417..189947) Roseobacter denitrificans OCh 114 4198182 YP_680609.1 CDS ansA NC_008209.1 190121 191101 D L-asparaginase II 190121..191101 Roseobacter denitrificans OCh 114 4198183 YP_680610.1 CDS serB NC_008209.1 191109 191984 R phosphoserine phosphatase complement(191109..191984) Roseobacter denitrificans OCh 114 4198184 YP_680611.1 CDS serC NC_008209.1 192308 193471 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 192308..193471 Roseobacter denitrificans OCh 114 4198185 YP_680612.1 CDS serA NC_008209.1 193514 195109 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 193514..195109 Roseobacter denitrificans OCh 114 4198186 YP_680613.1 CDS tdh NC_008209.1 195174 196205 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(195174..196205) Roseobacter denitrificans OCh 114 4198187 YP_680614.1 CDS kbl NC_008209.1 196214 197401 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(196214..197401) Roseobacter denitrificans OCh 114 4198188 YP_680615.1 CDS RD1_0200 NC_008209.1 197496 198059 R DNA-binding protein complement(197496..198059) Roseobacter denitrificans OCh 114 4198189 YP_680616.1 CDS bktB NC_008209.1 198181 199359 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 198181..199359 Roseobacter denitrificans OCh 114 4198190 YP_680617.1 CDS ubiB NC_008209.1 199369 200916 R ubiquinone biosynthesis protein UbiB complement(199369..200916) Roseobacter denitrificans OCh 114 4198191 YP_680618.1 CDS ubiE NC_008209.1 200917 201669 R ubiquinone/menaquinone biosynthesis methyltransferase UbiE complement(200917..201669) Roseobacter denitrificans OCh 114 4198192 YP_680619.1 CDS mutM NC_008209.1 201887 202738 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 201887..202738 Roseobacter denitrificans OCh 114 4198193 YP_680620.1 CDS RD1_0205 NC_008209.1 202803 203579 D enoyl-CoA hydratase/isomerase family protein 202803..203579 Roseobacter denitrificans OCh 114 4198194 YP_680621.1 CDS RD1_0206 NC_008209.1 203608 204015 D hypothetical protein 203608..204015 Roseobacter denitrificans OCh 114 4198195 YP_680622.1 CDS rpsT NC_008209.1 204187 204450 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 204187..204450 Roseobacter denitrificans OCh 114 4198196 YP_680623.1 CDS dnaA NC_008209.1 204958 206322 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 204958..206322 Roseobacter denitrificans OCh 114 4198158 YP_680624.1 CDS dnaN NC_008209.1 206464 207582 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 206464..207582 Roseobacter denitrificans OCh 114 4198159 YP_680625.1 CDS recF NC_008209.1 207640 208740 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 207640..208740 Roseobacter denitrificans OCh 114 4198160 YP_680626.1 CDS RD1_0211 NC_008209.1 208737 209357 D amino acid transporter LysE 208737..209357 Roseobacter denitrificans OCh 114 4198161 YP_680627.1 CDS gyrB NC_008209.1 209436 211850 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 209436..211850 Roseobacter denitrificans OCh 114 4198162 YP_680628.1 CDS RD1_0213 NC_008209.1 211946 212263 R thioredoxin complement(211946..212263) Roseobacter denitrificans OCh 114 4198163 YP_680629.1 CDS ccdA NC_008209.1 212378 213091 R cytochrome c biogenesis protein complement(212378..213091) Roseobacter denitrificans OCh 114 4198164 YP_680630.1 CDS RD1_0215 NC_008209.1 213264 214499 D hypothetical protein 213264..214499 Roseobacter denitrificans OCh 114 4198165 YP_680631.1 CDS RD1_0216 NC_008209.1 214501 215940 D uracil-DNA glycosylase 214501..215940 Roseobacter denitrificans OCh 114 4198166 YP_680632.1 CDS idhA NC_008209.1 215980 216975 R myo-inositol dehydrogenase complement(215980..216975) Roseobacter denitrificans OCh 114 4198167 YP_680633.1 CDS fba NC_008209.1 216979 217827 R fructose-bisphosphate aldolase complement(216979..217827) Roseobacter denitrificans OCh 114 4198168 YP_680634.1 CDS RD1_0219 NC_008209.1 217824 218666 R hypothetical protein complement(217824..218666) Roseobacter denitrificans OCh 114 4198169 YP_680635.1 CDS RD1_0220 NC_008209.1 218671 219645 R pfkB family kinase complement(218671..219645) Roseobacter denitrificans OCh 114 4198170 YP_680636.1 CDS iolD NC_008209.1 219669 221534 R acetolactate synthase complement(219669..221534) Roseobacter denitrificans OCh 114 4198171 YP_680637.1 CDS RD1_0222 NC_008209.1 221652 222755 D oxidoreductase 221652..222755 Roseobacter denitrificans OCh 114 4198172 YP_680638.1 CDS RD1_0223 NC_008209.1 222774 223670 D hypothetical protein 222774..223670 Roseobacter denitrificans OCh 114 4198173 YP_680639.1 CDS RD1_0224 NC_008209.1 223684 224817 D oxidoreductase 223684..224817 Roseobacter denitrificans OCh 114 4198174 YP_680640.1 CDS RD1_0225 NC_008209.1 224950 225585 D cyclic nucleotide-binding domain-containing protein 224950..225585 Roseobacter denitrificans OCh 114 4198175 YP_680641.1 CDS leuD NC_008209.1 225804 226409 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 225804..226409 Roseobacter denitrificans OCh 114 4198176 YP_680642.1 CDS RD1_0227 NC_008209.1 226454 227707 D hypothetical protein 226454..227707 Roseobacter denitrificans OCh 114 4198177 YP_680643.1 CDS leuB NC_008209.1 227780 228886 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 227780..228886 Roseobacter denitrificans OCh 114 4195057 YP_680644.1 CDS RD1_0229 NC_008209.1 228998 230002 D hypothetical protein 228998..230002 Roseobacter denitrificans OCh 114 4195058 YP_680645.1 CDS RD1_0231 NC_008209.1 230261 231901 R peptide ABC transporter substrate-binding protein complement(230261..231901) Roseobacter denitrificans OCh 114 4195059 YP_680646.1 CDS RD1_0232 NC_008209.1 232120 233331 D HAMP domain-containing protein 232120..233331 Roseobacter denitrificans OCh 114 4195060 YP_680647.1 CDS RD1_0234 NC_008209.1 233606 234763 D LacI family transcriptional regulator 233606..234763 Roseobacter denitrificans OCh 114 4195062 YP_680648.1 CDS RD1_0235 NC_008209.1 234760 235971 D hypothetical protein 234760..235971 Roseobacter denitrificans OCh 114 4195063 YP_680649.1 CDS RD1_0236 NC_008209.1 236071 236796 R hypothetical protein complement(236071..236796) Roseobacter denitrificans OCh 114 4195064 YP_680650.1 CDS RD1_0237 NC_008209.1 236804 237319 R hypothetical protein complement(236804..237319) Roseobacter denitrificans OCh 114 4195065 YP_680651.1 CDS RD1_0238 NC_008209.1 237454 238695 D oxidoreductase, FAD-binding 237454..238695 Roseobacter denitrificans OCh 114 4195066 YP_680652.1 CDS RD1_0239 NC_008209.1 238716 239705 D peptide ABC transporter solute-binding protein 238716..239705 Roseobacter denitrificans OCh 114 4195067 YP_680653.1 CDS RD1_0240 NC_008209.1 239769 240293 D hypothetical protein 239769..240293 Roseobacter denitrificans OCh 114 4195068 YP_680654.1 CDS RD1_0241 NC_008209.1 240274 241608 D TRAP dicarboxylate transporter subunit DctM 240274..241608 Roseobacter denitrificans OCh 114 4195069 YP_680655.1 CDS RD1_0242 NC_008209.1 241608 242537 D hypothetical protein 241608..242537 Roseobacter denitrificans OCh 114 4195070 YP_680656.1 CDS RD1_0243 NC_008209.1 242542 243276 D allophanate hydrolase subunit 1 242542..243276 Roseobacter denitrificans OCh 114 4195071 YP_680657.1 CDS RD1_0244 NC_008209.1 243273 244295 D allophanate hydrolase subunit 2 243273..244295 Roseobacter denitrificans OCh 114 4195072 YP_680658.1 CDS RD1_0245 NC_008209.1 244308 245078 D LamB/YcsF family protein 244308..245078 Roseobacter denitrificans OCh 114 4195073 YP_680659.1 CDS iorA NC_008209.1 245288 245749 D isoquinoline 1-oxidoreductase subunit alpha 245288..245749 Roseobacter denitrificans OCh 114 4195074 YP_680660.1 CDS iorB NC_008209.1 245753 247936 D isoquinoline 1-oxidoreductase subunit beta 245753..247936 Roseobacter denitrificans OCh 114 4197831 YP_680661.1 CDS araC NC_008209.1 248152 249030 D AraC family transcriptional regulator 248152..249030 Roseobacter denitrificans OCh 114 4197832 YP_680662.1 CDS RD1_0249 NC_008209.1 249157 250302 D AraC family transcriptional regulator 249157..250302 Roseobacter denitrificans OCh 114 4197833 YP_680663.1 CDS RD1_0250 NC_008209.1 250459 251688 D acyl-CoA dehydrogenase 250459..251688 Roseobacter denitrificans OCh 114 4197834 YP_680664.1 CDS fliI NC_008209.1 252232 253581 R flagellum-specific ATP synthase complement(252232..253581) Roseobacter denitrificans OCh 114 4197835 YP_680665.1 CDS flgB NC_008209.1 253663 254061 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal-body rod protein FlgB 253663..254061 Roseobacter denitrificans OCh 114 4197836 YP_680666.1 CDS flgC NC_008209.1 254075 254464 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 254075..254464 Roseobacter denitrificans OCh 114 4197837 YP_680667.1 CDS fliE NC_008209.1 254518 254844 D forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar hook-basal body protein FliE 254518..254844 Roseobacter denitrificans OCh 114 4197838 YP_680668.1 CDS fliQ NC_008209.1 254846 255115 D flagellar biosynthetic protein FliQ 254846..255115 Roseobacter denitrificans OCh 114 4197839 YP_680669.1 CDS flgF NC_008209.1 255118 255831 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes; flagellar basal body rod protein FlgF 255118..255831 Roseobacter denitrificans OCh 114 4197840 YP_680670.1 CDS flgG NC_008209.1 255861 256646 D makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 255861..256646 Roseobacter denitrificans OCh 114 4197841 YP_680671.1 CDS flgA NC_008209.1 256643 257065 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 256643..257065 Roseobacter denitrificans OCh 114 4197842 YP_680672.1 CDS flgH NC_008209.1 257075 257806 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 257075..257806 Roseobacter denitrificans OCh 114 4197843 YP_680673.1 CDS RD1_0261 NC_008209.1 257816 258316 D hypothetical protein 257816..258316 Roseobacter denitrificans OCh 114 4197844 YP_680674.1 CDS RD1_0262 NC_008209.1 258378 258602 D transposase 258378..258602 Roseobacter denitrificans OCh 114 4197845 YP_680675.1 CDS RD1_0263 NC_008209.1 258705 258971 D hypothetical protein 258705..258971 Roseobacter denitrificans OCh 114 4197846 YP_680676.1 CDS RD1_0264 NC_008209.1 259000 259518 D integrase catalytic subunit 259000..259518 Roseobacter denitrificans OCh 114 4197847 YP_680677.1 CDS fliP NC_008209.1 259899 260636 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(259899..260636) Roseobacter denitrificans OCh 114 4197848 YP_680678.1 CDS fliN NC_008209.1 260633 260926 R flagellar motor switch protein FliN complement(260633..260926) Roseobacter denitrificans OCh 114 4197849 YP_680679.1 CDS RD1_0267 NC_008209.1 260919 261518 R ABC transporter ATP-binding protein complement(260919..261518) Roseobacter denitrificans OCh 114 4197850 YP_680680.1 CDS fliF NC_008209.1 261518 263140 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(261518..263140) Roseobacter denitrificans OCh 114 4198448 YP_680681.1 CDS fliL NC_008209.1 263263 263754 D flagellar basal body-associated protein FliL 263263..263754 Roseobacter denitrificans OCh 114 4198449 YP_680682.1 CDS RD1_0271 NC_008209.1 263765 264133 D hypothetical protein 263765..264133 Roseobacter denitrificans OCh 114 4198450 YP_680683.1 CDS RD1_0272 NC_008209.1 264145 264738 D hypothetical protein 264145..264738 Roseobacter denitrificans OCh 114 4198451 YP_680684.1 CDS motA NC_008209.1 264805 265674 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 264805..265674 Roseobacter denitrificans OCh 114 4198452 YP_680685.1 CDS RD1_0274 NC_008209.1 265671 267926 D hypothetical protein 265671..267926 Roseobacter denitrificans OCh 114 4198453 YP_680686.1 CDS RD1_0275 NC_008209.1 268321 268422 D hypothetical protein 268321..268422 Roseobacter denitrificans OCh 114 4198454 YP_680687.1 CDS RD1_0276 NC_008209.1 268503 268964 D integrase catalytic subunit 268503..268964 Roseobacter denitrificans OCh 114 4198455 YP_680688.1 CDS RD1_0277 NC_008209.1 269452 270537 R ABC transporter ATP-binding protein complement(269452..270537) Roseobacter denitrificans OCh 114 4198456 YP_680689.1 CDS RD1_0278 NC_008209.1 270534 271325 R spermidine-ABC transporter permease complement(270534..271325) Roseobacter denitrificans OCh 114 4198457 YP_680690.1 CDS potB NC_008209.1 271322 272299 R spermidine/putrescine transport system, permease complement(271322..272299) Roseobacter denitrificans OCh 114 4198458 YP_680691.1 CDS potD NC_008209.1 272377 273483 R spermidine/putrescine ABC transporter substrate-binding protein complement(272377..273483) Roseobacter denitrificans OCh 114 4198459 YP_680692.1 CDS RD1_0281 NC_008209.1 273528 274634 R dehydrogenase complement(273528..274634) Roseobacter denitrificans OCh 114 4198460 YP_680693.1 CDS RD1_0282 NC_008209.1 274631 275218 R hypothetical protein complement(274631..275218) Roseobacter denitrificans OCh 114 4198461 YP_680694.1 CDS RD1_0283 NC_008209.1 275218 275697 R hypothetical protein complement(275218..275697) Roseobacter denitrificans OCh 114 4198462 YP_680695.1 CDS RD1_0284 NC_008209.1 275694 277133 R oxidoreductase complement(275694..277133) Roseobacter denitrificans OCh 114 4198463 YP_680696.1 CDS RD1_0285 NC_008209.1 277202 278539 R NreB protein complement(277202..278539) Roseobacter denitrificans OCh 114 4198464 YP_680697.1 CDS RD1_0286 NC_008209.1 278721 279437 D hypothetical protein 278721..279437 Roseobacter denitrificans OCh 114 4198465 YP_680698.1 CDS RD1_0287 NC_008209.1 279456 280064 R enoyl-CoA hydratase/isomerase family protein complement(279456..280064) Roseobacter denitrificans OCh 114 4198466 YP_680699.1 CDS RD1_0288 NC_008209.1 280061 280810 R dehydrogenase complement(280061..280810) Roseobacter denitrificans OCh 114 4198428 YP_680700.1 CDS RD1_0289 NC_008209.1 280944 282452 D hypothetical protein 280944..282452 Roseobacter denitrificans OCh 114 4198429 YP_680701.1 CDS pmbA NC_008209.1 282483 283883 D PmbA protein 282483..283883 Roseobacter denitrificans OCh 114 4198430 YP_680702.1 CDS RD1_0291 NC_008209.1 283870 284664 D inositol monophosphatase 283870..284664 Roseobacter denitrificans OCh 114 4198431 YP_680703.1 CDS RD1_0292 NC_008209.1 284674 284967 D hypothetical protein 284674..284967 Roseobacter denitrificans OCh 114 4198432 YP_680704.1 CDS RD1_0293 NC_008209.1 284974 286221 D 3-deoxy-D-manno-octulosonic acid transferase 284974..286221 Roseobacter denitrificans OCh 114 4198433 YP_680705.1 CDS lpxK NC_008209.1 286208 287203 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 286208..287203 Roseobacter denitrificans OCh 114 4198434 YP_680706.1 CDS bdbD NC_008209.1 287267 287938 R thiol-disulfide oxidoreductase D complement(287267..287938) Roseobacter denitrificans OCh 114 4198435 YP_680707.1 CDS RD1_0296 NC_008209.1 287952 288461 R hypothetical protein complement(287952..288461) Roseobacter denitrificans OCh 114 4198436 YP_680708.1 CDS mutY NC_008209.1 288546 289613 D A/G-specific adenine glycosylase 288546..289613 Roseobacter denitrificans OCh 114 4198437 YP_680709.1 CDS ccrM NC_008209.1 289727 290821 R modification methylase complement(289727..290821) Roseobacter denitrificans OCh 114 4198438 YP_680710.1 CDS rnhB NC_008209.1 290914 291510 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(290914..291510) Roseobacter denitrificans OCh 114 4198439 YP_680711.1 CDS RD1_0301 NC_008209.1 291742 292227 R hypothetical protein complement(291742..292227) Roseobacter denitrificans OCh 114 4198440 YP_680712.1 CDS RD1_0302 NC_008209.1 292221 292688 D hypothetical protein 292221..292688 Roseobacter denitrificans OCh 114 4198441 YP_680713.1 CDS RD1_0303 NC_008209.1 292660 293364 D hypothetical protein 292660..293364 Roseobacter denitrificans OCh 114 4198442 YP_680714.1 CDS bphF NC_008209.1 293443 294213 D 4-hydroxy-2-oxovalerate aldolase 293443..294213 Roseobacter denitrificans OCh 114 4198443 YP_680715.1 CDS RD1_0305 NC_008209.1 294210 295361 R hypothetical protein complement(294210..295361) Roseobacter denitrificans OCh 114 4198444 YP_680716.1 CDS asd NC_008209.1 295514 296536 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 295514..296536 Roseobacter denitrificans OCh 114 4198445 YP_680717.1 CDS RD1_0307 NC_008209.1 296611 297165 R hypothetical protein complement(296611..297165) Roseobacter denitrificans OCh 114 4198446 YP_680718.1 CDS glpQ NC_008209.1 297162 298934 R glycerophosphoryl diester phosphodiesterase family protein complement(297162..298934) Roseobacter denitrificans OCh 114 4198447 YP_680719.1 CDS RD1_0309 NC_008209.1 299130 299540 R hypothetical protein complement(299130..299540) Roseobacter denitrificans OCh 114 4195501 YP_680720.1 CDS RD1_0310 NC_008209.1 299577 299888 R hypothetical protein complement(299577..299888) Roseobacter denitrificans OCh 114 4195502 YP_680721.1 CDS RD1_0311 NC_008209.1 299893 300870 R hypothetical protein complement(299893..300870) Roseobacter denitrificans OCh 114 4195503 YP_680722.1 CDS cynT NC_008209.1 300952 301602 R carbonate anhydratase complement(300952..301602) Roseobacter denitrificans OCh 114 4195504 YP_680723.1 CDS RD1_0313 NC_008209.1 301733 302128 D hypothetical protein 301733..302128 Roseobacter denitrificans OCh 114 4195505 YP_680724.1 CDS pepA NC_008209.1 302192 303574 D leucine aminopeptidase 302192..303574 Roseobacter denitrificans OCh 114 4195506 YP_680725.1 CDS RD1_0315 NC_008209.1 303571 304365 D NlpC/P60 domain-containing protein 303571..304365 Roseobacter denitrificans OCh 114 4195507 YP_680726.1 CDS RD1_0316 NC_008209.1 304378 304725 R hypothetical protein complement(304378..304725) Roseobacter denitrificans OCh 114 4195508 YP_680727.1 CDS RD1_0317 NC_008209.1 304795 306456 R hypothetical protein complement(304795..306456) Roseobacter denitrificans OCh 114 4195509 YP_680728.1 CDS RD1_0318 NC_008209.1 306540 307157 R TetR family transcriptional regulator complement(306540..307157) Roseobacter denitrificans OCh 114 4195510 YP_680729.1 CDS RD1_0319 NC_008209.1 307438 308367 D auxin efflux carrier family protein 307438..308367 Roseobacter denitrificans OCh 114 4195511 YP_680730.1 CDS fghA NC_008209.1 308437 309267 D S-formylglutathione hydrolase 308437..309267 Roseobacter denitrificans OCh 114 4195512 YP_680731.1 CDS RD1_0321 NC_008209.1 309264 309719 D YaiI/YqxD family protein 309264..309719 Roseobacter denitrificans OCh 114 4195513 YP_680732.1 CDS RD1_0322 NC_008209.1 309740 310372 D hydrolase 309740..310372 Roseobacter denitrificans OCh 114 4195514 YP_680733.1 CDS RD1_0323 NC_008209.1 310369 311292 D ornithine cyclodeaminase 310369..311292 Roseobacter denitrificans OCh 114 4195515 YP_680734.1 CDS RD1_0324 NC_008209.1 311289 312212 D alpha/beta hydrolase 311289..312212 Roseobacter denitrificans OCh 114 4195516 YP_680735.1 CDS RD1_0325 NC_008209.1 312209 313501 R major facilitator transporter complement(312209..313501) Roseobacter denitrificans OCh 114 4195517 YP_680736.1 CDS RD1_0326 NC_008209.1 313515 314642 D ATPase 313515..314642 Roseobacter denitrificans OCh 114 4195518 YP_680737.1 CDS folC NC_008209.1 314648 315922 R folC bifunctional protein complement(314648..315922) Roseobacter denitrificans OCh 114 4195519 YP_680738.1 CDS accD NC_008209.1 315919 316863 R acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(315919..316863) Roseobacter denitrificans OCh 114 4198020 YP_680739.1 CDS RD1_0329 NC_008209.1 316922 317821 R CAAX amino terminal protease family protein complement(316922..317821) Roseobacter denitrificans OCh 114 4198021 YP_680740.1 CDS RD1_0330 NC_008209.1 317831 318001 R hypothetical protein complement(317831..318001) Roseobacter denitrificans OCh 114 4198022 YP_680741.1 CDS RD1_0331 NC_008209.1 318011 320953 R ABC transporter complement(318011..320953) Roseobacter denitrificans OCh 114 4198023 YP_680742.1 CDS ilvD NC_008209.1 321157 322920 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 321157..322920 Roseobacter denitrificans OCh 114 4198024 YP_680743.1 CDS ctpA NC_008209.1 323220 324560 R carboxyl-terminal protease family protein complement(323220..324560) Roseobacter denitrificans OCh 114 4198025 YP_680744.1 CDS RD1_0334 NC_008209.1 324567 325709 R M23 peptidase domain-containing protein complement(324567..325709) Roseobacter denitrificans OCh 114 4198026 YP_680745.1 CDS gpmI NC_008209.1 325694 327211 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(325694..327211) Roseobacter denitrificans OCh 114 4198027 YP_680746.1 CDS dnaE NC_008209.1 327286 330261 R DNA polymerase III subunit alpha complement(327286..330261) Roseobacter denitrificans OCh 114 4198028 YP_680747.1 CDS RD1_0338 NC_008209.1 330297 330443 D hypothetical protein 330297..330443 Roseobacter denitrificans OCh 114 4198029 YP_680748.1 CDS RD1_0339 NC_008209.1 331353 333293 D transposase 331353..333293 Roseobacter denitrificans OCh 114 4198030 YP_680749.1 CDS RD1_0340 NC_008209.1 333253 334092 D hypothetical protein 333253..334092 Roseobacter denitrificans OCh 114 4198031 YP_680750.1 CDS RD1_0341 NC_008209.1 334092 334430 D hypothetical protein 334092..334430 Roseobacter denitrificans OCh 114 4198032 YP_680751.1 CDS RD1_0342 NC_008209.1 334427 334750 D hypothetical protein 334427..334750 Roseobacter denitrificans OCh 114 4198033 YP_680752.1 CDS RD1_0343 NC_008209.1 334747 335157 D hypothetical protein 334747..335157 Roseobacter denitrificans OCh 114 4198034 YP_680753.1 CDS RD1_0344 NC_008209.1 335490 336506 D hypothetical protein 335490..336506 Roseobacter denitrificans OCh 114 4198035 YP_680754.1 CDS RD1_0345 NC_008209.1 336530 337429 D hypothetical protein 336530..337429 Roseobacter denitrificans OCh 114 4198036 YP_680755.1 CDS RD1_0346 NC_008209.1 337614 337979 D hypothetical protein 337614..337979 Roseobacter denitrificans OCh 114 4198037 YP_680756.1 CDS RD1_0348 NC_008209.1 337985 338479 D phage virion morphogenesis protein 337985..338479 Roseobacter denitrificans OCh 114 4198038 YP_680757.1 CDS polA NC_008209.1 339313 342114 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 339313..342114 Roseobacter denitrificans OCh 114 4198039 YP_680758.1 CDS RD1_0350 NC_008209.1 342206 342967 R hypothetical protein complement(342206..342967) Roseobacter denitrificans OCh 114 4198119 YP_680759.1 CDS RD1_0352 NC_008209.1 343043 343618 R hypothetical protein complement(343043..343618) Roseobacter denitrificans OCh 114 4198120 YP_680760.1 CDS moxR NC_008209.1 343688 344695 D methanol dehydrogenase regulator moxR 343688..344695 Roseobacter denitrificans OCh 114 4198121 YP_680761.1 CDS RD1_0354 NC_008209.1 344692 345597 D hypothetical protein 344692..345597 Roseobacter denitrificans OCh 114 4198122 YP_680762.1 CDS RD1_0355 NC_008209.1 345594 348371 D hypothetical protein 345594..348371 Roseobacter denitrificans OCh 114 4198123 YP_680763.1 CDS RD1_0356 NC_008209.1 348368 350410 D hypothetical protein 348368..350410 Roseobacter denitrificans OCh 114 4198124 YP_680764.1 CDS RD1_0357 NC_008209.1 350567 352768 D hybrid sensory histidine kinase 350567..352768 Roseobacter denitrificans OCh 114 4198125 YP_680765.1 CDS RD1_0358 NC_008209.1 352753 353532 R hypothetical protein complement(352753..353532) Roseobacter denitrificans OCh 114 4198126 YP_680766.1 CDS recQ NC_008209.1 353567 355609 R ATP-dependent DNA helicase RecQ complement(353567..355609) Roseobacter denitrificans OCh 114 4198127 YP_680767.1 CDS RD1_0360 NC_008209.1 355717 356004 R hypothetical protein complement(355717..356004) Roseobacter denitrificans OCh 114 4198128 YP_680768.1 CDS RD1_0361 NC_008209.1 356161 357525 D major facilitator superfamily permease 356161..357525 Roseobacter denitrificans OCh 114 4198129 YP_680769.1 CDS mepA NC_008209.1 357522 358451 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; murein endopeptidase 357522..358451 Roseobacter denitrificans OCh 114 4198130 YP_680770.1 CDS RD1_0364 NC_008209.1 358424 359344 D hypothetical protein 358424..359344 Roseobacter denitrificans OCh 114 4198131 YP_680771.1 CDS RD1_0365 NC_008209.1 359414 360034 D hypothetical protein 359414..360034 Roseobacter denitrificans OCh 114 4198132 YP_680772.1 CDS RD1_0366 NC_008209.1 360368 360784 D peptidyl-tRNA hydrolase domain-containing protein 360368..360784 Roseobacter denitrificans OCh 114 4198133 YP_680773.1 CDS RD1_0367 NC_008209.1 360858 361604 D 3'- 5' exonuclease family protein 360858..361604 Roseobacter denitrificans OCh 114 4198134 YP_680774.1 CDS kdsD NC_008209.1 361601 362563 D arabinose 5-phosphate isomerase 361601..362563 Roseobacter denitrificans OCh 114 4198135 YP_680775.1 CDS RD1_0369 NC_008209.1 362569 363177 D hypothetical protein 362569..363177 Roseobacter denitrificans OCh 114 4198136 YP_680776.1 CDS RD1_0370 NC_008209.1 363181 363672 D hypothetical protein 363181..363672 Roseobacter denitrificans OCh 114 4198137 YP_680777.1 CDS RD1_0371 NC_008209.1 363673 364431 D ABC transporter ATP-binding protein 363673..364431 Roseobacter denitrificans OCh 114 4198408 YP_680778.1 CDS RD1_0372 NC_008209.1 364678 365244 D sigma-54 modulation protein 364678..365244 Roseobacter denitrificans OCh 114 4198409 YP_680779.1 CDS ptsN NC_008209.1 365285 365749 D nitrogen regulatory IIA protein 365285..365749 Roseobacter denitrificans OCh 114 4198410 YP_680780.1 CDS gtaB NC_008209.1 365801 366694 R UTP-glucose-1-phosphate uridylyltransferase complement(365801..366694) Roseobacter denitrificans OCh 114 4198411 YP_680781.1 CDS kdsB NC_008209.1 366908 367708 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(366908..367708) Roseobacter denitrificans OCh 114 4198412 YP_680782.1 CDS cysQ NC_008209.1 367708 368508 R 3'(2'),5'-bisphosphate nucleotidase complement(367708..368508) Roseobacter denitrificans OCh 114 4198413 YP_680783.1 CDS alkB NC_008209.1 368844 369443 R alkylated DNA repair protein complement(368844..369443) Roseobacter denitrificans OCh 114 4198414 YP_680784.1 CDS dnaK NC_008209.1 369654 371564 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 369654..371564 Roseobacter denitrificans OCh 114 4198415 YP_680785.1 CDS dnaJ NC_008209.1 371643 372797 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 371643..372797 Roseobacter denitrificans OCh 114 4198416 YP_680786.1 CDS RD1_0380 NC_008209.1 372925 373020 R hypothetical protein complement(372925..373020) Roseobacter denitrificans OCh 114 4198417 YP_680787.1 CDS secA NC_008209.1 373054 375768 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(373054..375768) Roseobacter denitrificans OCh 114 4198418 YP_680788.1 CDS RD1_0383 NC_008209.1 375943 376800 D peptidyl-prolyl cis-trans isomerase domain-containing protein 375943..376800 Roseobacter denitrificans OCh 114 4198419 YP_680789.1 CDS argJ NC_008209.1 376807 378033 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 376807..378033 Roseobacter denitrificans OCh 114 4198420 YP_680790.1 CDS mutT NC_008209.1 378052 378450 D mutator mutT protein 378052..378450 Roseobacter denitrificans OCh 114 4198421 YP_680791.1 CDS infB NC_008209.1 378784 381258 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(378784..381258) Roseobacter denitrificans OCh 114 4198422 YP_680792.1 CDS RD1_0387 NC_008209.1 381268 381888 R hypothetical protein complement(381268..381888) Roseobacter denitrificans OCh 114 4198423 YP_680793.1 CDS nusA NC_008209.1 381911 383527 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(381911..383527) Roseobacter denitrificans OCh 114 4198424 YP_680794.1 CDS RD1_0389 NC_008209.1 383527 384117 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(383527..384117) Roseobacter denitrificans OCh 114 4198425 YP_680795.1 CDS RD1_0390 NC_008209.1 384261 385154 R ABC transporter substrate-binding protein complement(384261..385154) Roseobacter denitrificans OCh 114 4198426 YP_680796.1 CDS pip NC_008209.1 385151 386092 R proline iminopeptidase complement(385151..386092) Roseobacter denitrificans OCh 114 4198427 YP_680797.1 CDS ubiG NC_008209.1 386171 386917 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 386171..386917 Roseobacter denitrificans OCh 114 4195382 YP_680798.1 CDS RD1_0393 NC_008209.1 387016 387459 R MarR family transcriptional regulator complement(387016..387459) Roseobacter denitrificans OCh 114 4195383 YP_680799.1 CDS RD1_0395 NC_008209.1 387460 388290 R carbon-nitrogen family hydrolase complement(387460..388290) Roseobacter denitrificans OCh 114 4195384 YP_680800.1 CDS grxC NC_008209.1 388290 388547 R glutaredoxin 3 complement(388290..388547) Roseobacter denitrificans OCh 114 4195385 YP_680801.1 CDS comF NC_008209.1 388587 389318 R competence protein F complement(388587..389318) Roseobacter denitrificans OCh 114 4195386 YP_680802.1 CDS RD1_0400 NC_008209.1 389437 390153 D hypothetical protein 389437..390153 Roseobacter denitrificans OCh 114 4195387 YP_680803.1 CDS hemH NC_008209.1 390239 391282 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 390239..391282 Roseobacter denitrificans OCh 114 4195388 YP_680804.1 CDS RD1_0402 NC_008209.1 391673 392284 R ErfK/YbiS/YcfS/YnhG family protein complement(391673..392284) Roseobacter denitrificans OCh 114 4195389 YP_680805.1 CDS RD1_0403 NC_008209.1 392449 392994 D SCP-like extracellular protein 392449..392994 Roseobacter denitrificans OCh 114 4195390 YP_680806.1 CDS RD1_0404 NC_008209.1 392999 393460 R ErfK/YbiS/YcfS/YnhG family protein complement(392999..393460) Roseobacter denitrificans OCh 114 4195391 YP_680807.1 CDS ccaA NC_008209.1 393586 394365 R voltage-gated sodium channel subunit complement(393586..394365) Roseobacter denitrificans OCh 114 4195392 YP_680808.1 CDS RD1_0406 NC_008209.1 394385 395611 R RNA methyltransferase complement(394385..395611) Roseobacter denitrificans OCh 114 4195393 YP_680809.1 CDS RD1_0407 NC_008209.1 395650 397482 R ABC transporter transmembrane ATP-binding protein complement(395650..397482) Roseobacter denitrificans OCh 114 4195394 YP_680810.1 CDS RD1_0408 NC_008209.1 397479 399317 R ABC transporter transmembrane ATP-binding protein complement(397479..399317) Roseobacter denitrificans OCh 114 4195395 YP_680811.1 CDS RD1_0409 NC_008209.1 399488 400666 R poly(A) polymerase complement(399488..400666) Roseobacter denitrificans OCh 114 4195396 YP_680812.1 CDS RD1_0410 NC_008209.1 400645 401235 R hydrolase complement(400645..401235) Roseobacter denitrificans OCh 114 4195397 YP_680813.1 CDS hslO NC_008209.1 401228 402259 R chaperonin, 33 kDa complement(401228..402259) Roseobacter denitrificans OCh 114 4195398 YP_680814.1 CDS RD1_0412 NC_008209.1 402299 402748 D hypothetical protein 402299..402748 Roseobacter denitrificans OCh 114 4195399 YP_680815.1 CDS RD1_0413 NC_008209.1 402724 403935 R response regulator complement(402724..403935) Roseobacter denitrificans OCh 114 4195400 YP_680816.1 CDS RD1_0414 NC_008209.1 404158 404490 D Hpt domain-containing protein 404158..404490 Roseobacter denitrificans OCh 114 4197982 YP_680817.1 CDS RD1_0415 NC_008209.1 404487 405278 R dehydrogenase complement(404487..405278) Roseobacter denitrificans OCh 114 4197983 YP_680818.1 CDS ilvA NC_008209.1 405287 406519 R catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase complement(405287..406519) Roseobacter denitrificans OCh 114 4197984 YP_680819.1 CDS argG NC_008209.1 406646 407866 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 406646..407866 Roseobacter denitrificans OCh 114 4197985 YP_680820.1 CDS RD1_0418 NC_008209.1 407957 408661 R hypothetical protein complement(407957..408661) Roseobacter denitrificans OCh 114 4197986 YP_680821.1 CDS msrA-1 NC_008209.1 408854 409516 D methionine-S-sulfoxide reductase 408854..409516 Roseobacter denitrificans OCh 114 4197987 YP_680822.1 CDS rbsK NC_008209.1 409513 410385 R ribokinase complement(409513..410385) Roseobacter denitrificans OCh 114 4197988 YP_680823.1 CDS tme NC_008209.1 410385 412640 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(410385..412640) Roseobacter denitrificans OCh 114 4197989 YP_680824.1 CDS mutS NC_008209.1 412776 415412 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 412776..415412 Roseobacter denitrificans OCh 114 4197990 YP_680825.1 CDS grpE NC_008209.1 415441 416004 R heat shock protein GrpE complement(415441..416004) Roseobacter denitrificans OCh 114 4197991 YP_680826.1 CDS hrcA NC_008209.1 416014 417048 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(416014..417048) Roseobacter denitrificans OCh 114 4197992 YP_680827.1 CDS rph NC_008209.1 417192 417905 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 417192..417905 Roseobacter denitrificans OCh 114 4197993 YP_680828.1 CDS RD1_0427 NC_008209.1 417902 418513 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 417902..418513 Roseobacter denitrificans OCh 114 4197994 YP_680829.1 CDS hemN NC_008209.1 418506 419663 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 418506..419663 Roseobacter denitrificans OCh 114 4197995 YP_680830.1 CDS parB NC_008209.1 419660 420556 R chromosome partitioning protein parB complement(419660..420556) Roseobacter denitrificans OCh 114 4197996 YP_680831.1 CDS parA NC_008209.1 420566 421375 R chromosome partitioning protein ParA complement(420566..421375) Roseobacter denitrificans OCh 114 4197997 YP_680832.1 CDS gidB NC_008209.1 421368 421967 R methyltransferase GidB complement(421368..421967) Roseobacter denitrificans OCh 114 4197998 YP_680833.1 CDS gidA NC_008209.1 421979 423850 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(421979..423850) Roseobacter denitrificans OCh 114 4197999 YP_680834.1 CDS trmE NC_008209.1 423855 425141 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(423855..425141) Roseobacter denitrificans OCh 114 4198000 YP_680835.1 CDS rho NC_008209.1 425171 426439 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(425171..426439) Roseobacter denitrificans OCh 114 4198001 YP_680836.1 CDS RD1_0435 NC_008209.1 426595 427044 R hypothetical protein complement(426595..427044) Roseobacter denitrificans OCh 114 4198330 YP_680837.1 CDS RD1_0436 NC_008209.1 427268 427366 D hypothetical protein 427268..427366 Roseobacter denitrificans OCh 114 4198331 YP_680838.1 CDS maf NC_008209.1 427445 428044 D septum formation protein 427445..428044 Roseobacter denitrificans OCh 114 4198332 YP_680839.1 CDS aroE NC_008209.1 428041 428874 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 428041..428874 Roseobacter denitrificans OCh 114 4198333 YP_680840.1 CDS coaE NC_008209.1 428871 429464 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 428871..429464 Roseobacter denitrificans OCh 114 4198334 YP_680841.1 CDS dnaQ NC_008209.1 429457 430143 D DNA polymerase III subunit epsilon 429457..430143 Roseobacter denitrificans OCh 114 4198335 YP_680842.1 CDS secB NC_008209.1 430146 430646 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(430146..430646) Roseobacter denitrificans OCh 114 4198336 YP_680843.1 CDS fxsA NC_008209.1 430700 431191 R FxsA protein complement(430700..431191) Roseobacter denitrificans OCh 114 4198337 YP_680844.1 CDS RD1_0444 NC_008209.1 431296 431958 D hypothetical protein 431296..431958 Roseobacter denitrificans OCh 114 4198338 YP_680845.1 CDS RD1_0446 NC_008209.1 432097 432687 D Smr domain-containing protein 432097..432687 Roseobacter denitrificans OCh 114 4198339 YP_680846.1 CDS RD1_0447 NC_008209.1 432684 433901 R transmembrane transport protein complement(432684..433901) Roseobacter denitrificans OCh 114 4198340 YP_680847.1 CDS hslU NC_008209.1 433940 435247 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(433940..435247) Roseobacter denitrificans OCh 114 4198341 YP_680848.1 CDS RD1_0449 NC_008209.1 435339 436451 R hypothetical protein complement(435339..436451) Roseobacter denitrificans OCh 114 4198342 YP_680849.1 CDS hslV NC_008209.1 436403 436960 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(436403..436960) Roseobacter denitrificans OCh 114 4198343 YP_680850.1 CDS trxA NC_008209.1 437073 437393 R thioredoxin complement(437073..437393) Roseobacter denitrificans OCh 114 4198344 YP_680851.1 CDS RD1_0452 NC_008209.1 437431 440808 R ATP-dependent DNA nuclease complement(437431..440808) Roseobacter denitrificans OCh 114 4198345 YP_680852.1 CDS RD1_0453 NC_008209.1 440805 443762 R hypothetical protein complement(440805..443762) Roseobacter denitrificans OCh 114 4198346 YP_680853.1 CDS RD1_0454 NC_008209.1 443755 444438 R nucleotidyltransferase family protein complement(443755..444438) Roseobacter denitrificans OCh 114 4198347 YP_680854.1 CDS RD1_0455 NC_008209.1 444423 445442 R hypothetical protein complement(444423..445442) Roseobacter denitrificans OCh 114 4198348 YP_680855.1 CDS RD1_0456 NC_008209.1 445439 445915 R hypothetical protein complement(445439..445915) Roseobacter denitrificans OCh 114 4198138 YP_680856.1 CDS RD1_0457 NC_008209.1 445966 447444 R hypothetical protein complement(445966..447444) Roseobacter denitrificans OCh 114 4198139 YP_680857.1 CDS senC NC_008209.1 449092 449715 D SenC protein 449092..449715 Roseobacter denitrificans OCh 114 4198141 YP_680858.1 CDS regA NC_008209.1 449812 450366 D photosynthetic apparatus regulatory protein 449812..450366 Roseobacter denitrificans OCh 114 4198142 YP_680859.1 CDS RD1_0463 NC_008209.1 450480 451067 R hypothetical protein complement(450480..451067) Roseobacter denitrificans OCh 114 4198143 YP_680860.1 CDS rfaI NC_008209.1 451064 452053 R lipopolysaccharide 1,3-galactosyltransferase complement(451064..452053) Roseobacter denitrificans OCh 114 4198144 YP_680861.1 CDS ahcY NC_008209.1 452305 453693 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 452305..453693 Roseobacter denitrificans OCh 114 4198145 YP_680862.1 CDS RD1_0466 NC_008209.1 453868 454233 D hypothetical protein 453868..454233 Roseobacter denitrificans OCh 114 4198146 YP_680863.1 CDS RD1_0467 NC_008209.1 454710 455132 R hypothetical protein complement(454710..455132) Roseobacter denitrificans OCh 114 4198147 YP_680864.1 CDS RD1_0468 NC_008209.1 455132 455404 R hypothetical protein complement(455132..455404) Roseobacter denitrificans OCh 114 4198148 YP_680865.1 CDS gpsA NC_008209.1 455406 456368 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(455406..456368) Roseobacter denitrificans OCh 114 4198149 YP_680866.1 CDS gcp NC_008209.1 456365 457462 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(456365..457462) Roseobacter denitrificans OCh 114 4198150 YP_680867.1 CDS hemD NC_008209.1 457543 458247 D uroporphyrinogen-III synthase 457543..458247 Roseobacter denitrificans OCh 114 4198151 YP_680868.1 CDS RD1_0472 NC_008209.1 458308 459795 D hypothetical protein 458308..459795 Roseobacter denitrificans OCh 114 4198152 YP_680869.1 CDS RD1_0473 NC_008209.1 459807 461285 D hypothetical protein 459807..461285 Roseobacter denitrificans OCh 114 4198153 YP_680870.1 CDS RD1_0474 NC_008209.1 461337 462164 R hypothetical protein complement(461337..462164) Roseobacter denitrificans OCh 114 4198154 YP_680871.1 CDS RD1_0475 NC_008209.1 462237 463301 D beta-carotene ketolase 462237..463301 Roseobacter denitrificans OCh 114 4198155 YP_680872.1 CDS RD1_0476 NC_008209.1 463338 464144 D enoyl-CoA hydratase/isomerase family protein 463338..464144 Roseobacter denitrificans OCh 114 4198156 YP_680873.1 CDS RD1_0477 NC_008209.1 464214 465290 R hypothetical protein complement(464214..465290) Roseobacter denitrificans OCh 114 4198157 YP_680874.1 CDS RD1_0478 NC_008209.1 465491 466639 D hypothetical protein 465491..466639 Roseobacter denitrificans OCh 114 4198236 YP_680875.1 CDS RD1_0479 NC_008209.1 466790 470086 R calcium binding hemolysin complement(466790..470086) Roseobacter denitrificans OCh 114 4198237 YP_680876.1 CDS RD1_0481 NC_008209.1 470358 471020 R hypothetical protein complement(470358..471020) Roseobacter denitrificans OCh 114 4198238 YP_680877.1 CDS RD1_0482 NC_008209.1 471056 471460 R hypothetical protein complement(471056..471460) Roseobacter denitrificans OCh 114 4198239 YP_680878.1 CDS RD1_0483 NC_008209.1 471677 472846 R hypothetical protein complement(471677..472846) Roseobacter denitrificans OCh 114 4198240 YP_680879.1 CDS iolB NC_008209.1 472862 473674 R myo-inositol catabolism protein IolB complement(472862..473674) Roseobacter denitrificans OCh 114 4198241 YP_680880.1 CDS RD1_0486 NC_008209.1 473671 474465 R sugar ABC transporter ATP-binding protein complement(473671..474465) Roseobacter denitrificans OCh 114 4198242 YP_680881.1 CDS RD1_0487 NC_008209.1 474467 475567 R sugar ABC transporter permease complement(474467..475567) Roseobacter denitrificans OCh 114 4198243 YP_680882.1 CDS RD1_0488 NC_008209.1 475630 476556 R sugar ABC transporter substrate-binding protein complement(475630..476556) Roseobacter denitrificans OCh 114 4198244 YP_680883.1 CDS RD1_0490 NC_008209.1 476714 477712 D LacI family transcriptional regulator 476714..477712 Roseobacter denitrificans OCh 114 4198245 YP_680884.1 CDS RD1_0491 NC_008209.1 477955 478242 D hypothetical protein 477955..478242 Roseobacter denitrificans OCh 114 4198246 YP_680885.1 CDS RD1_0492 NC_008209.1 478389 479048 R ErfK/YbiS/YcfS/YnhG family protein complement(478389..479048) Roseobacter denitrificans OCh 114 4198247 YP_680886.1 CDS RD1_0493 NC_008209.1 479172 479681 R hypothetical protein complement(479172..479681) Roseobacter denitrificans OCh 114 4198248 YP_680887.1 CDS RD1_0494 NC_008209.1 479855 480766 R hypothetical protein complement(479855..480766) Roseobacter denitrificans OCh 114 4198249 YP_680888.1 CDS RD1_0495 NC_008209.1 480774 481628 R hypothetical protein complement(480774..481628) Roseobacter denitrificans OCh 114 4198250 YP_680889.1 CDS RD1_0496 NC_008209.1 481757 482263 D hypothetical protein 481757..482263 Roseobacter denitrificans OCh 114 4198251 YP_680890.1 CDS RD1_0497 NC_008209.1 482746 483201 R hypothetical protein complement(482746..483201) Roseobacter denitrificans OCh 114 4198252 YP_680891.1 CDS RD1_0498 NC_008209.1 483527 485047 D hypothetical protein 483527..485047 Roseobacter denitrificans OCh 114 4198253 YP_680892.1 CDS RD1_0499 NC_008209.1 485058 485819 R hypothetical protein complement(485058..485819) Roseobacter denitrificans OCh 114 4198254 YP_680893.1 CDS RD1_0500 NC_008209.1 486154 486681 D hypothetical protein 486154..486681 Roseobacter denitrificans OCh 114 4197811 YP_680894.1 CDS RD1_0501 NC_008209.1 486633 488504 D cyclase 486633..488504 Roseobacter denitrificans OCh 114 4197812 YP_680895.1 CDS RD1_0502 NC_008209.1 488501 489358 R hypothetical protein complement(488501..489358) Roseobacter denitrificans OCh 114 4197813 YP_680896.1 CDS RD1_0503 NC_008209.1 489358 490521 R hypothetical protein complement(489358..490521) Roseobacter denitrificans OCh 114 4197814 YP_680897.1 CDS RD1_0504 NC_008209.1 490518 491285 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(490518..491285) Roseobacter denitrificans OCh 114 4197815 YP_680898.1 CDS mmgC NC_008209.1 491282 492427 R acyl-CoA dehydrogenase complement(491282..492427) Roseobacter denitrificans OCh 114 4197816 YP_680899.1 CDS RD1_0506 NC_008209.1 492572 493588 D oxidoreductase 492572..493588 Roseobacter denitrificans OCh 114 4197817 YP_680900.1 CDS RD1_0507 NC_008209.1 493585 494031 D MaoC-like protein 493585..494031 Roseobacter denitrificans OCh 114 4197818 YP_680901.1 CDS RD1_0508 NC_008209.1 494141 494452 R hypothetical protein complement(494141..494452) Roseobacter denitrificans OCh 114 4197819 YP_680902.1 CDS RD1_0509 NC_008209.1 494465 495220 R enoyl-CoA hydratase/isomerase family protein complement(494465..495220) Roseobacter denitrificans OCh 114 4197820 YP_680903.1 CDS pct NC_008209.1 495217 496800 R propionate CoA-transferase complement(495217..496800) Roseobacter denitrificans OCh 114 4197821 YP_680904.1 CDS dkgB NC_008209.1 496950 497768 D 2,5-diketo-D-gluconate reductase B 496950..497768 Roseobacter denitrificans OCh 114 4197822 YP_680905.1 CDS betA NC_008209.1 497788 499392 R choline dehydrogenase complement(497788..499392) Roseobacter denitrificans OCh 114 4197823 YP_680906.1 CDS RD1_0513 NC_008209.1 499571 500140 R hypothetical protein complement(499571..500140) Roseobacter denitrificans OCh 114 4197824 YP_680907.1 CDS gutB NC_008209.1 500156 501184 R sorbitol dehydrogenase complement(500156..501184) Roseobacter denitrificans OCh 114 4197825 YP_680908.1 CDS RD1_0515 NC_008209.1 501353 502024 D TetR family transcriptional regulator 501353..502024 Roseobacter denitrificans OCh 114 4197826 YP_680909.1 CDS RD1_0516 NC_008209.1 502021 502146 R hypothetical protein complement(502021..502146) Roseobacter denitrificans OCh 114 4197827 YP_680910.1 CDS RD1_0517 NC_008209.1 502143 503246 R sugar ABC transporter ATP-binding protein complement(502143..503246) Roseobacter denitrificans OCh 114 4197828 YP_680911.1 CDS RD1_0518 NC_008209.1 503250 504131 R sugar ABC transporter permease complement(503250..504131) Roseobacter denitrificans OCh 114 4197829 YP_680912.1 CDS RD1_0519 NC_008209.1 504131 505024 R sugar ABC transporter permease complement(504131..505024) Roseobacter denitrificans OCh 114 4197830 YP_680913.1 CDS RD1_0521 NC_008209.1 505080 506330 R sugar ABC transporter substrate-binding protein complement(505080..506330) Roseobacter denitrificans OCh 114 4197792 YP_680914.1 CDS RD1_0522 NC_008209.1 506487 508424 R hypothetical protein complement(506487..508424) Roseobacter denitrificans OCh 114 4197793 YP_680915.1 CDS RD1_0524 NC_008209.1 508443 509720 R hypothetical protein complement(508443..509720) Roseobacter denitrificans OCh 114 4197794 YP_680916.1 CDS RD1_0525 NC_008209.1 509717 511261 R hypothetical protein complement(509717..511261) Roseobacter denitrificans OCh 114 4197795 YP_680917.1 CDS RD1_0526 NC_008209.1 511261 512244 R hypothetical protein complement(511261..512244) Roseobacter denitrificans OCh 114 4197796 YP_680918.1 CDS RD1_0527 NC_008209.1 512241 512729 R hypothetical protein complement(512241..512729) Roseobacter denitrificans OCh 114 4197797 YP_680919.1 CDS RD1_0528 NC_008209.1 512726 513709 R hypothetical protein complement(512726..513709) Roseobacter denitrificans OCh 114 4197798 YP_680920.1 CDS moxR NC_008209.1 513720 514709 R MoxR-like ATPase complement(513720..514709) Roseobacter denitrificans OCh 114 4197799 YP_680921.1 CDS napD NC_008209.1 514706 515662 R nonspecific acid phosphatase complement(514706..515662) Roseobacter denitrificans OCh 114 4197800 YP_680922.1 CDS RD1_0531 NC_008209.1 515751 517349 R arylsulfatase complement(515751..517349) Roseobacter denitrificans OCh 114 4197801 YP_680923.1 CDS coxG NC_008209.1 517512 517958 R carbon monoxide dehydrogenase G protein complement(517512..517958) Roseobacter denitrificans OCh 114 4197802 YP_680924.1 CDS RD1_0533 NC_008209.1 518053 518931 R metallo-beta-lactamase family protein complement(518053..518931) Roseobacter denitrificans OCh 114 4197803 YP_680925.1 CDS RD1_0534 NC_008209.1 518992 519393 R hypothetical protein complement(518992..519393) Roseobacter denitrificans OCh 114 4197804 YP_680926.1 CDS RD1_0535 NC_008209.1 519428 520498 R amine oxidase complement(519428..520498) Roseobacter denitrificans OCh 114 4197805 YP_680927.1 CDS chrR NC_008209.1 520495 521172 R transcription negative regulator complement(520495..521172) Roseobacter denitrificans OCh 114 4197806 YP_680928.1 CDS RD1_0537 NC_008209.1 521314 522093 D creatinine amidohydrolase 521314..522093 Roseobacter denitrificans OCh 114 4197807 YP_680929.1 CDS RD1_0538 NC_008209.1 522162 522704 D hydrolase 522162..522704 Roseobacter denitrificans OCh 114 4197808 YP_680930.1 CDS RD1_0539 NC_008209.1 522774 523604 R hypothetical protein complement(522774..523604) Roseobacter denitrificans OCh 114 4197809 YP_680931.1 CDS RD1_0540 NC_008209.1 523935 525065 D ABC transporter substrate-binding protein 523935..525065 Roseobacter denitrificans OCh 114 4197810 YP_680932.1 CDS RD1_0541 NC_008209.1 525117 526037 D branched-chain amino acid ABC transporter permease 525117..526037 Roseobacter denitrificans OCh 114 4197772 YP_680933.1 CDS RD1_0542 NC_008209.1 526037 527017 D branched-chain amino acid ABC transporter permease 526037..527017 Roseobacter denitrificans OCh 114 4197773 YP_680934.1 CDS RD1_0543 NC_008209.1 527010 527759 D ABC transporter 527010..527759 Roseobacter denitrificans OCh 114 4197774 YP_680935.1 CDS RD1_0544 NC_008209.1 527756 528442 D ABC transporter ATP-binding protein 527756..528442 Roseobacter denitrificans OCh 114 4197775 YP_680936.1 CDS RD1_0545 NC_008209.1 528533 529450 R glyoxylase complement(528533..529450) Roseobacter denitrificans OCh 114 4197776 YP_680937.1 CDS fadD NC_008209.1 529666 531387 D long-chain-fatty-acid--CoA ligase 529666..531387 Roseobacter denitrificans OCh 114 4197777 YP_680938.1 CDS RD1_0547 NC_008209.1 531393 532274 D sodium/bile acid symporter family protein 531393..532274 Roseobacter denitrificans OCh 114 4197778 YP_680939.1 CDS dxs NC_008209.1 532374 534302 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(532374..534302) Roseobacter denitrificans OCh 114 4197779 YP_680940.1 CDS ispA NC_008209.1 534312 535181 R geranyltranstransferase complement(534312..535181) Roseobacter denitrificans OCh 114 4197780 YP_680941.1 CDS xseB NC_008209.1 535185 535445 R exodeoxyribonuclease VII small subunit complement(535185..535445) Roseobacter denitrificans OCh 114 4197781 YP_680942.1 CDS petR NC_008209.1 535521 536222 R DNA-binding response regulator PetR complement(535521..536222) Roseobacter denitrificans OCh 114 4197782 YP_680943.1 CDS marR NC_008209.1 536219 536731 R MarR family transcriptional regulator complement(536219..536731) Roseobacter denitrificans OCh 114 4197783 YP_680944.1 CDS ilvE NC_008209.1 536900 537769 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 536900..537769 Roseobacter denitrificans OCh 114 4197784 YP_680945.1 CDS RD1_0554 NC_008209.1 537729 538130 D hypothetical protein 537729..538130 Roseobacter denitrificans OCh 114 4197785 YP_680946.1 CDS RD1_0555 NC_008209.1 538166 539140 R hypothetical protein complement(538166..539140) Roseobacter denitrificans OCh 114 4197786 YP_680947.1 CDS aroC NC_008209.1 539207 540307 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(539207..540307) Roseobacter denitrificans OCh 114 4197787 YP_680948.1 CDS RD1_0557 NC_008209.1 540540 541520 D thiamin ABC transporter substrate-binding protein 540540..541520 Roseobacter denitrificans OCh 114 4197788 YP_680949.1 CDS thiP NC_008209.1 541496 543052 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 541496..543052 Roseobacter denitrificans OCh 114 4197789 YP_680950.1 CDS RD1_0559 NC_008209.1 543269 543583 R hypothetical protein complement(543269..543583) Roseobacter denitrificans OCh 114 4197790 YP_680951.1 CDS ribH NC_008209.1 543831 544277 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta complement(543831..544277) Roseobacter denitrificans OCh 114 4197791 YP_680952.1 CDS RD1_0561 NC_008209.1 544574 545200 D transcriptional regulator 544574..545200 Roseobacter denitrificans OCh 114 4197753 YP_680953.1 CDS RD1_0562 NC_008209.1 545243 545845 D glutathione S-transferase family protein 545243..545845 Roseobacter denitrificans OCh 114 4197754 YP_680954.1 CDS petA NC_008209.1 546052 546612 D ubiquinol-cytochrome c reductase, iron-sulfur subunit 546052..546612 Roseobacter denitrificans OCh 114 4197755 YP_680955.1 CDS petB NC_008209.1 546625 547968 D cytochrome b 546625..547968 Roseobacter denitrificans OCh 114 4197756 YP_680956.1 CDS petC NC_008209.1 547983 548771 D cytochrome c1 547983..548771 Roseobacter denitrificans OCh 114 4197757 YP_680957.1 CDS RD1_0566 NC_008209.1 549751 550899 D hypothetical protein 549751..550899 Roseobacter denitrificans OCh 114 4197758 YP_680958.1 CDS RD1_0567 NC_008209.1 551138 552769 R hypothetical protein complement(551138..552769) Roseobacter denitrificans OCh 114 4197759 YP_680959.1 CDS RD1_0568 NC_008209.1 553097 554263 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 553097..554263 Roseobacter denitrificans OCh 114 4197760 YP_680960.1 CDS RD1_0569 NC_008209.1 554268 555290 D sulfotransferase domain-containing protein 554268..555290 Roseobacter denitrificans OCh 114 4197761 YP_680961.1 CDS RD1_0570 NC_008209.1 555377 556240 D hypothetical protein 555377..556240 Roseobacter denitrificans OCh 114 4197762 YP_680962.1 CDS RD1_0571 NC_008209.1 556309 557007 D hypothetical protein 556309..557007 Roseobacter denitrificans OCh 114 4197763 YP_680963.1 CDS RD1_0572 NC_008209.1 557015 558109 D hypothetical protein 557015..558109 Roseobacter denitrificans OCh 114 4197764 YP_680964.1 CDS RD1_0573 NC_008209.1 558164 559039 D hypothetical protein 558164..559039 Roseobacter denitrificans OCh 114 4197765 YP_680965.1 CDS RD1_0575 NC_008209.1 559039 559965 D glycosyl transferase family protein 559039..559965 Roseobacter denitrificans OCh 114 4197766 YP_680966.1 CDS RD1_0576 NC_008209.1 560565 560699 D hypothetical protein 560565..560699 Roseobacter denitrificans OCh 114 4197767 YP_680967.1 CDS flgI NC_008209.1 560806 561909 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(560806..561909) Roseobacter denitrificans OCh 114 4197768 YP_680968.1 CDS flgL NC_008209.1 561906 562910 R flagellar hook-associated protein complement(561906..562910) Roseobacter denitrificans OCh 114 4197769 YP_680969.1 CDS flgK NC_008209.1 562914 564359 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(562914..564359) Roseobacter denitrificans OCh 114 4197770 YP_680970.1 CDS flgE NC_008209.1 564404 565714 R flagellar hook protein FlgE complement(564404..565714) Roseobacter denitrificans OCh 114 4197771 YP_680971.1 CDS motB NC_008209.1 565815 566654 R chemotaxis protein MotB complement(565815..566654) Roseobacter denitrificans OCh 114 4196209 YP_680972.1 CDS RD1_0584 NC_008209.1 566835 567725 R hypothetical protein complement(566835..567725) Roseobacter denitrificans OCh 114 4196210 YP_680973.1 CDS pncA NC_008209.1 567843 568451 D pyrazinamidase/nicotinamidase 567843..568451 Roseobacter denitrificans OCh 114 4196211 YP_680974.1 CDS pncB NC_008209.1 568444 569736 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 568444..569736 Roseobacter denitrificans OCh 114 4196212 YP_680975.1 CDS RD1_0587 NC_008209.1 569800 569898 D hypothetical protein 569800..569898 Roseobacter denitrificans OCh 114 4196213 YP_680976.1 CDS RD1_0589 NC_008209.1 569981 570145 D hypothetical protein 569981..570145 Roseobacter denitrificans OCh 114 4196214 YP_680977.1 CDS RD1_0590 NC_008209.1 570328 570432 D hypothetical protein 570328..570432 Roseobacter denitrificans OCh 114 4196215 YP_680978.1 CDS RD1_0591 NC_008209.1 570864 571034 D hypothetical protein 570864..571034 Roseobacter denitrificans OCh 114 4196216 YP_680979.1 CDS RD1_0592 NC_008209.1 571339 572700 R HlyD family secretion protein complement(571339..572700) Roseobacter denitrificans OCh 114 4196217 YP_680980.1 CDS RD1_0593 NC_008209.1 572702 574939 R cyclosin secreting ABC transporter ATP binding protein complement(572702..574939) Roseobacter denitrificans OCh 114 4196218 YP_680981.1 CDS RD1_0594 NC_008209.1 574936 576594 R ABC transporter ATP-binding protein complement(574936..576594) Roseobacter denitrificans OCh 114 4196219 YP_680982.1 CDS RD1_0595 NC_008209.1 576660 579725 R type I secretion target domain-containing protein complement(576660..579725) Roseobacter denitrificans OCh 114 4196220 YP_680983.1 CDS msrA NC_008209.1 579855 580376 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(579855..580376) Roseobacter denitrificans OCh 114 4196221 YP_680984.1 CDS msrB NC_008209.1 580373 580822 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(580373..580822) Roseobacter denitrificans OCh 114 4196222 YP_680985.1 CDS gpo NC_008209.1 580959 581507 D glutathione peroxidase 580959..581507 Roseobacter denitrificans OCh 114 4196223 YP_680986.1 CDS RD1_0600 NC_008209.1 581511 582152 D hypothetical protein 581511..582152 Roseobacter denitrificans OCh 114 4196224 YP_680987.1 CDS RD1_0601 NC_008209.1 582199 583068 R hypothetical protein complement(582199..583068) Roseobacter denitrificans OCh 114 4196225 YP_680988.1 CDS RD1_0602 NC_008209.1 583203 583832 D amino acid transporter LysE 583203..583832 Roseobacter denitrificans OCh 114 4196226 YP_680989.1 CDS hup NC_008209.1 583987 584274 R DNA-binding protein HU complement(583987..584274) Roseobacter denitrificans OCh 114 4196227 YP_680990.1 CDS amn NC_008209.1 584412 585875 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(584412..585875) Roseobacter denitrificans OCh 114 4196228 YP_680991.1 CDS ade NC_008209.1 585872 587674 R adenine deaminase complement(585872..587674) Roseobacter denitrificans OCh 114 4198369 YP_680992.1 CDS RD1_0606 NC_008209.1 587725 588144 D hypothetical protein 587725..588144 Roseobacter denitrificans OCh 114 4198370 YP_680993.1 CDS RD1_0607 NC_008209.1 588521 590956 D dimethylglycine dehydrogenase 588521..590956 Roseobacter denitrificans OCh 114 4198371 YP_680994.1 CDS RD1_0608 NC_008209.1 590923 591102 R hypothetical protein complement(590923..591102) Roseobacter denitrificans OCh 114 4198372 YP_680995.1 CDS RD1_0609 NC_008209.1 591117 591872 D hypothetical protein 591117..591872 Roseobacter denitrificans OCh 114 4198373 YP_680996.1 CDS RD1_0610 NC_008209.1 591862 592851 D sterol desaturase 591862..592851 Roseobacter denitrificans OCh 114 4198374 YP_680997.1 CDS acdA NC_008209.1 592957 594120 D acyl-CoA dehydrogenase 592957..594120 Roseobacter denitrificans OCh 114 4198375 YP_680998.1 CDS RD1_0612 NC_008209.1 594183 596213 D acyl-CoA synthetase 594183..596213 Roseobacter denitrificans OCh 114 4198376 YP_680999.1 CDS caiD NC_008209.1 596200 596979 D catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 596200..596979 Roseobacter denitrificans OCh 114 4198377 YP_681000.1 CDS RD1_0614 NC_008209.1 597019 597864 D hypothetical protein 597019..597864 Roseobacter denitrificans OCh 114 4198378 YP_681001.1 CDS RD1_0615 NC_008209.1 597982 598626 R hypothetical protein complement(597982..598626) Roseobacter denitrificans OCh 114 4198379 YP_681002.1 CDS leuC NC_008209.1 598888 600294 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(598888..600294) Roseobacter denitrificans OCh 114 4198380 YP_681003.1 CDS RD1_0617 NC_008209.1 600339 600485 R hypothetical protein complement(600339..600485) Roseobacter denitrificans OCh 114 4198381 YP_681004.1 CDS RD1_0618 NC_008209.1 600528 601844 D mechanosensitive ion channel protein 600528..601844 Roseobacter denitrificans OCh 114 4198382 YP_681005.1 CDS RD1_0619 NC_008209.1 601916 602656 D hypothetical protein 601916..602656 Roseobacter denitrificans OCh 114 4198383 YP_681006.1 CDS RD1_0620 NC_008209.1 602813 603181 D iojap family protein 602813..603181 Roseobacter denitrificans OCh 114 4198384 YP_681007.1 CDS RD1_0621 NC_008209.1 603197 603667 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 603197..603667 Roseobacter denitrificans OCh 114 4198385 YP_681008.1 CDS RD1_0622 NC_008209.1 603688 604272 R hypothetical protein complement(603688..604272) Roseobacter denitrificans OCh 114 4198386 YP_681009.1 CDS RD1_0623 NC_008209.1 604372 604746 R hypothetical protein complement(604372..604746) Roseobacter denitrificans OCh 114 4198387 YP_681010.1 CDS RD1_0624 NC_008209.1 604759 605457 R hypothetical protein complement(604759..605457) Roseobacter denitrificans OCh 114 4198216 YP_681011.1 CDS glcD NC_008209.1 605531 606985 D glycolate oxidase subunit GlcD 605531..606985 Roseobacter denitrificans OCh 114 4198217 YP_681012.1 CDS glcE NC_008209.1 607037 608182 D glycolate oxidase, subunit GlcE 607037..608182 Roseobacter denitrificans OCh 114 4198218 YP_681013.1 CDS glcF NC_008209.1 608182 609507 D glycolate oxidase, iron-sulfur subunit 608182..609507 Roseobacter denitrificans OCh 114 4198219 YP_681014.1 CDS RD1_0628 NC_008209.1 609598 610419 D trypsin domain-containing protein 609598..610419 Roseobacter denitrificans OCh 114 4198220 YP_681015.1 CDS ibpA NC_008209.1 610631 611098 D HSP20 family protein 610631..611098 Roseobacter denitrificans OCh 114 4198221 YP_681016.1 CDS RD1_0630 NC_008209.1 611188 611400 R hypothetical protein complement(611188..611400) Roseobacter denitrificans OCh 114 4198222 YP_681017.1 CDS RD1_0631 NC_008209.1 611397 612698 R ABC transporter substrate-binding protein complement(611397..612698) Roseobacter denitrificans OCh 114 4198223 YP_681018.1 CDS RD1_0632 NC_008209.1 612813 614213 D flavin-containing monooxygenase 612813..614213 Roseobacter denitrificans OCh 114 4198224 YP_681019.1 CDS ald NC_008209.1 614461 615888 R aldehyde dehydrogenase complement(614461..615888) Roseobacter denitrificans OCh 114 4198225 YP_681020.1 CDS RD1_0634 NC_008209.1 616042 616695 D anti-oxidant AhpCTSA family protein 616042..616695 Roseobacter denitrificans OCh 114 4198226 YP_681021.1 CDS RD1_0635 NC_008209.1 616843 617820 R glycosyl transferase family protein complement(616843..617820) Roseobacter denitrificans OCh 114 4198227 YP_681022.1 CDS RD1_0636 NC_008209.1 617819 618772 D glycosyl transferase family protein 617819..618772 Roseobacter denitrificans OCh 114 4198228 YP_681023.1 CDS pnp NC_008209.1 618906 621041 R polynucleotide phosphorylase complement(618906..621041) Roseobacter denitrificans OCh 114 4198229 YP_681024.1 CDS RD1_0638 NC_008209.1 621496 623049 R Na(+)-linked D-alanine glycine permease complement(621496..623049) Roseobacter denitrificans OCh 114 4198230 YP_681025.1 CDS RD1_0639 NC_008209.1 623060 623497 R universal stress family protein complement(623060..623497) Roseobacter denitrificans OCh 114 4198231 YP_681026.1 CDS RD1_0641 NC_008209.1 623772 624362 R amino acid transporter LysE complement(623772..624362) Roseobacter denitrificans OCh 114 4198232 YP_681027.1 CDS rpsO NC_008209.1 624537 624806 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(624537..624806) Roseobacter denitrificans OCh 114 4198233 YP_681028.1 CDS RD1_0643 NC_008209.1 624977 625240 R type I secretion target repeat-containing protein complement(624977..625240) Roseobacter denitrificans OCh 114 4198234 YP_681029.1 CDS RD1_0645 NC_008209.1 625962 626543 R hypothetical protein complement(625962..626543) Roseobacter denitrificans OCh 114 4198235 YP_681030.1 CDS RD1_0646 NC_008209.1 626688 627233 R hypothetical protein complement(626688..627233) Roseobacter denitrificans OCh 114 4198080 YP_681031.1 CDS truB NC_008209.1 627364 628275 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(627364..628275) Roseobacter denitrificans OCh 114 4198081 YP_681032.1 CDS RD1_0648 NC_008209.1 628381 629121 R hypothetical protein complement(628381..629121) Roseobacter denitrificans OCh 114 4198082 YP_681033.1 CDS rbfA NC_008209.1 629118 629549 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(629118..629549) Roseobacter denitrificans OCh 114 4198083 YP_681034.1 CDS dapB NC_008209.1 629629 630447 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 629629..630447 Roseobacter denitrificans OCh 114 4198084 YP_681035.1 CDS RD1_0651 NC_008209.1 630538 630894 D hypothetical protein 630538..630894 Roseobacter denitrificans OCh 114 4198085 YP_681036.1 CDS RD1_0652 NC_008209.1 630960 631154 R hypothetical protein complement(630960..631154) Roseobacter denitrificans OCh 114 4198086 YP_681037.1 CDS RD1_0653 NC_008209.1 631240 632511 D rRNA methyltransferase RsmB 631240..632511 Roseobacter denitrificans OCh 114 4198087 YP_681038.1 CDS RD1_0654 NC_008209.1 632577 634364 D hypothetical protein 632577..634364 Roseobacter denitrificans OCh 114 4198088 YP_681039.1 CDS purH NC_008209.1 634384 635970 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 634384..635970 Roseobacter denitrificans OCh 114 4198089 YP_681040.1 CDS lspA NC_008209.1 635985 636470 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 635985..636470 Roseobacter denitrificans OCh 114 4198090 YP_681041.1 CDS RD1_0657 NC_008209.1 636537 637040 D hypothetical protein 636537..637040 Roseobacter denitrificans OCh 114 4198091 YP_681042.1 CDS pqqE NC_008209.1 637158 638489 D M16 family peptidase 637158..638489 Roseobacter denitrificans OCh 114 4198092 YP_681043.1 CDS RD1_0659 NC_008209.1 638489 639805 D M16 family peptidase 638489..639805 Roseobacter denitrificans OCh 114 4198093 YP_681044.1 CDS ald NC_008209.1 639848 642190 R aldehyde dehydrogenase complement(639848..642190) Roseobacter denitrificans OCh 114 4198094 YP_681045.1 CDS deoC NC_008209.1 642218 643174 R deoxyribose-phosphate aldolase complement(642218..643174) Roseobacter denitrificans OCh 114 4198095 YP_681046.1 CDS mutL NC_008209.1 643354 645186 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 643354..645186 Roseobacter denitrificans OCh 114 4198096 YP_681047.1 CDS RD1_0663 NC_008209.1 645183 646418 D RmuC domain-containing protein 645183..646418 Roseobacter denitrificans OCh 114 4198097 YP_681048.1 CDS RD1_0664 NC_008209.1 646415 646513 D hypothetical protein 646415..646513 Roseobacter denitrificans OCh 114 4198098 YP_681049.1 CDS uxuA NC_008209.1 646510 647697 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(646510..647697) Roseobacter denitrificans OCh 114 4198040 YP_681050.1 CDS RD1_0666 NC_008209.1 647694 648746 R oxidoreductase complement(647694..648746) Roseobacter denitrificans OCh 114 4198041 YP_681051.1 CDS RD1_0667 NC_008209.1 648748 649749 R oxidoreductase complement(648748..649749) Roseobacter denitrificans OCh 114 4198042 YP_681052.1 CDS RD1_0668 NC_008209.1 649746 650783 R oxidoreductase complement(649746..650783) Roseobacter denitrificans OCh 114 4198043 YP_681053.1 CDS kdgK NC_008209.1 650780 651661 R 2-dehydro-3-deoxygluconokinase complement(650780..651661) Roseobacter denitrificans OCh 114 4198044 YP_681054.1 CDS RD1_0671 NC_008209.1 651658 652542 R hypothetical protein complement(651658..652542) Roseobacter denitrificans OCh 114 4198045 YP_681055.1 CDS garR NC_008209.1 652543 653430 R 2-hydroxy-3-oxopropionate reductase complement(652543..653430) Roseobacter denitrificans OCh 114 4198046 YP_681056.1 CDS RD1_0673 NC_008209.1 653443 654321 R phytanoyl-CoA dioxygenase complement(653443..654321) Roseobacter denitrificans OCh 114 4198047 YP_681057.1 CDS RD1_0674 NC_008209.1 654308 655330 R oxidoreductase complement(654308..655330) Roseobacter denitrificans OCh 114 4198048 YP_681058.1 CDS garD NC_008209.1 655327 656835 R D-galactarate dehydratase complement(655327..656835) Roseobacter denitrificans OCh 114 4198049 YP_681059.1 CDS RD1_0676 NC_008209.1 656847 657797 R hypothetical protein complement(656847..657797) Roseobacter denitrificans OCh 114 4198050 YP_681060.1 CDS RD1_0677 NC_008209.1 657813 659435 R TRAP dicarboxylate transporter subunit DctM complement(657813..659435) Roseobacter denitrificans OCh 114 4198051 YP_681061.1 CDS RD1_0678 NC_008209.1 659435 660058 R TRAP dicarboxylate transporter DctQ subunit complement(659435..660058) Roseobacter denitrificans OCh 114 4198052 YP_681062.1 CDS RD1_0679 NC_008209.1 660302 661471 R racemase complement(660302..661471) Roseobacter denitrificans OCh 114 4198053 YP_681063.1 CDS RD1_0680 NC_008209.1 661543 662565 R TRAP dicarboxylate transporter subunit DctP complement(661543..662565) Roseobacter denitrificans OCh 114 4198054 YP_681064.1 CDS RD1_0681 NC_008209.1 662590 662688 D hypothetical protein 662590..662688 Roseobacter denitrificans OCh 114 4198055 YP_681065.1 CDS RD1_0682 NC_008209.1 662762 663439 D transcriptional regulatory protein 662762..663439 Roseobacter denitrificans OCh 114 4198056 YP_681066.1 CDS RD1_0683 NC_008209.1 663412 664383 R hypothetical protein complement(663412..664383) Roseobacter denitrificans OCh 114 4198057 YP_681067.1 CDS glxR NC_008209.1 664380 665267 R 2-hydroxy-3-oxopropionate reductase complement(664380..665267) Roseobacter denitrificans OCh 114 4198058 YP_681068.1 CDS RD1_0685 NC_008209.1 665467 666228 D oxidoreductase 665467..666228 Roseobacter denitrificans OCh 114 4198059 YP_681069.1 CDS RD1_0686 NC_008209.1 666225 668024 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 666225..668024 Roseobacter denitrificans OCh 114 4198061 YP_681070.1 CDS RD1_0688 NC_008209.1 668058 668906 D 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 668058..668906 Roseobacter denitrificans OCh 114 4198062 YP_681071.1 CDS RD1_0689 NC_008209.1 668907 669836 D D-isomer specific 2-hydroxyacid dehydrogenase 668907..669836 Roseobacter denitrificans OCh 114 4198063 YP_681072.1 CDS RD1_0690 NC_008209.1 669838 670938 D racemase 669838..670938 Roseobacter denitrificans OCh 114 4198064 YP_681073.1 CDS chrR NC_008209.1 670935 671588 R anti-sigma factor ChrR complement(670935..671588) Roseobacter denitrificans OCh 114 4198065 YP_681074.1 CDS rpoE NC_008209.1 671596 672252 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(671596..672252) Roseobacter denitrificans OCh 114 4198066 YP_681075.1 CDS RD1_0693 NC_008209.1 672406 673704 D dehydrogenase 672406..673704 Roseobacter denitrificans OCh 114 4198067 YP_681076.1 CDS RD1_0694 NC_008209.1 673701 674459 D hypothetical protein 673701..674459 Roseobacter denitrificans OCh 114 4198068 YP_681077.1 CDS RD1_0695 NC_008209.1 674459 675688 D sodium:galactoside symporter family protein 674459..675688 Roseobacter denitrificans OCh 114 4198069 YP_681078.1 CDS RD1_0696 NC_008209.1 675698 676252 D hypothetical protein 675698..676252 Roseobacter denitrificans OCh 114 4198070 YP_681079.1 CDS RD1_0697 NC_008209.1 676252 676983 D oxidoreductase 676252..676983 Roseobacter denitrificans OCh 114 4198071 YP_681080.1 CDS RD1_0698 NC_008209.1 676987 678039 R saccharopine dehydrogenase complement(676987..678039) Roseobacter denitrificans OCh 114 4198072 YP_681081.1 CDS gst NC_008209.1 678036 678656 R glutathione S-transferase complement(678036..678656) Roseobacter denitrificans OCh 114 4198073 YP_681082.1 CDS RD1_0700 NC_008209.1 678667 679320 R phosphoglycerate mutase complement(678667..679320) Roseobacter denitrificans OCh 114 4198074 YP_681083.1 CDS RD1_0701 NC_008209.1 679438 679563 D hypothetical protein 679438..679563 Roseobacter denitrificans OCh 114 4198075 YP_681084.1 CDS RD1_0702 NC_008209.1 679654 681624 D AMP-binding protein 679654..681624 Roseobacter denitrificans OCh 114 4198076 YP_681085.1 CDS RD1_0703 NC_008209.1 681662 682480 D branched-chain amino acid ABC transporter ATP-binding protein 681662..682480 Roseobacter denitrificans OCh 114 4198077 YP_681086.1 CDS RD1_0704 NC_008209.1 682582 683571 D branched-chain amino acid ABC transporter permease 682582..683571 Roseobacter denitrificans OCh 114 4198078 YP_681087.1 CDS RD1_0705 NC_008209.1 683602 683940 R hypothetical protein complement(683602..683940) Roseobacter denitrificans OCh 114 4198079 YP_681088.1 CDS RD1_0706 NC_008209.1 684146 685222 D branched-chain amino acid ABC transporter permease 684146..685222 Roseobacter denitrificans OCh 114 4198002 YP_681089.1 CDS RD1_0708 NC_008209.1 685313 686596 D hypothetical protein 685313..686596 Roseobacter denitrificans OCh 114 4198003 YP_681090.1 CDS RD1_0709 NC_008209.1 686729 687556 D branched-chain amino acid ABC transporter ATP-binding protein 686729..687556 Roseobacter denitrificans OCh 114 4198004 YP_681091.1 CDS paaK NC_008209.1 687719 688954 D phenylacetate-CoA ligase 687719..688954 Roseobacter denitrificans OCh 114 4198005 YP_681092.1 CDS RD1_0711 NC_008209.1 689085 689789 D hypothetical protein 689085..689789 Roseobacter denitrificans OCh 114 4198006 YP_681093.1 CDS RD1_0715 NC_008209.1 690832 691650 D voltage-gated K+ channel protein 690832..691650 Roseobacter denitrificans OCh 114 4198008 YP_681094.1 CDS RD1_0716 NC_008209.1 691586 692329 D hypothetical protein 691586..692329 Roseobacter denitrificans OCh 114 4198009 YP_681095.1 CDS hutG NC_008209.1 692810 693670 D N-formylglutamate amidohydrolase 692810..693670 Roseobacter denitrificans OCh 114 4198011 YP_681096.1 CDS dinB NC_008209.1 693673 694926 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(693673..694926) Roseobacter denitrificans OCh 114 4198012 YP_681097.1 CDS pyrF NC_008209.1 695269 696000 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(695269..696000) Roseobacter denitrificans OCh 114 4198013 YP_681098.1 CDS clpB NC_008209.1 696573 699191 D ATP-dependent Clp protease, ATP-binding subunit ClpB 696573..699191 Roseobacter denitrificans OCh 114 4198014 YP_681099.1 CDS RD1_0722 NC_008209.1 699363 699848 R hypothetical protein complement(699363..699848) Roseobacter denitrificans OCh 114 4198015 YP_681100.1 CDS RD1_0723 NC_008209.1 700100 700744 D hydrolase 700100..700744 Roseobacter denitrificans OCh 114 4198016 YP_681101.1 CDS RD1_0725 NC_008209.1 700873 701778 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 700873..701778 Roseobacter denitrificans OCh 114 4198017 YP_681102.1 CDS RD1_0726 NC_008209.1 701807 702412 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 701807..702412 Roseobacter denitrificans OCh 114 4198018 YP_681103.1 CDS RD1_0732 NC_008209.1 708589 708714 D hypothetical protein 708589..708714 Roseobacter denitrificans OCh 114 4197913 YP_681104.1 CDS RD1_0733 NC_008209.1 709902 710048 R hypothetical protein complement(709902..710048) Roseobacter denitrificans OCh 114 4197914 YP_681105.1 CDS RD1_0734 NC_008209.1 710114 710887 D hypothetical protein 710114..710887 Roseobacter denitrificans OCh 114 4197915 YP_681106.1 CDS RD1_0735 NC_008209.1 711419 711817 R hypothetical protein complement(711419..711817) Roseobacter denitrificans OCh 114 4197916 YP_681107.1 CDS RD1_0736 NC_008209.1 711814 711930 R hypothetical protein complement(711814..711930) Roseobacter denitrificans OCh 114 4197917 YP_681108.1 CDS ubiG NC_008209.1 711927 712547 R 3-demethylubiquinone-9 3-methyltransferase complement(711927..712547) Roseobacter denitrificans OCh 114 4197918 YP_681109.1 CDS RD1_0738 NC_008209.1 712510 713355 R hypothetical protein complement(712510..713355) Roseobacter denitrificans OCh 114 4197919 YP_681110.1 CDS RD1_0740 NC_008209.1 713850 715145 R TRAP-type C4-dicarboxylate transport protein, permease component complement(713850..715145) Roseobacter denitrificans OCh 114 4197920 YP_681111.1 CDS RD1_0741 NC_008209.1 715142 715684 R hypothetical protein complement(715142..715684) Roseobacter denitrificans OCh 114 4197921 YP_681112.1 CDS RD1_0742 NC_008209.1 715745 716740 R C4-dicarboxylate-binding protein complement(715745..716740) Roseobacter denitrificans OCh 114 4197922 YP_681113.1 CDS RD1_0743 NC_008209.1 716807 717463 R transcriptional regulator complement(716807..717463) Roseobacter denitrificans OCh 114 4197923 YP_681114.1 CDS dapA NC_008209.1 717456 718325 R dihydrodipicolinate synthase complement(717456..718325) Roseobacter denitrificans OCh 114 4197889 YP_681115.1 CDS yihV NC_008209.1 718424 719293 D sugar kinase yihV 718424..719293 Roseobacter denitrificans OCh 114 4197890 YP_681116.1 CDS thiD NC_008209.1 720200 720979 D phosphomethylpyrimidine kinase 720200..720979 Roseobacter denitrificans OCh 114 4197891 YP_681117.1 CDS thiO NC_008209.1 720976 721956 D thiamine biosynthesis oxidoreductase ThiO 720976..721956 Roseobacter denitrificans OCh 114 4197892 YP_681118.1 CDS thiS NC_008209.1 721934 722131 D thiamine biosynthesis protein ThiS 721934..722131 Roseobacter denitrificans OCh 114 4197893 YP_681119.1 CDS thiG NC_008209.1 722133 722903 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 722133..722903 Roseobacter denitrificans OCh 114 4197894 YP_681120.1 CDS thiE NC_008209.1 722900 723496 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 722900..723496 Roseobacter denitrificans OCh 114 4197895 YP_681121.1 CDS thiF NC_008209.1 723493 724449 D thiamine biosynthesis protein ThiF 723493..724449 Roseobacter denitrificans OCh 114 4197896 YP_681122.1 CDS RD1_0752 NC_008209.1 724460 725395 D ABC transporter substrate-binding protein 724460..725395 Roseobacter denitrificans OCh 114 4197897 YP_681123.1 CDS tenA NC_008209.1 725392 726060 D transcriptional activator 725392..726060 Roseobacter denitrificans OCh 114 4197898 YP_681124.1 CDS RD1_0754 NC_008209.1 726069 726758 D ABC transporter ATP-binding protein 726069..726758 Roseobacter denitrificans OCh 114 4197899 YP_681125.1 CDS tenA NC_008209.1 726755 727408 D transcriptional regulator 726755..727408 Roseobacter denitrificans OCh 114 4197900 YP_681126.1 CDS RD1_0756 NC_008209.1 727405 728148 D ABC transporter permease 727405..728148 Roseobacter denitrificans OCh 114 4197901 YP_681127.1 CDS arcD NC_008209.1 728709 730001 R arginine/ornithine antiporter complement(728709..730001) Roseobacter denitrificans OCh 114 4197902 YP_681128.1 CDS arcA NC_008209.1 730241 730687 R arginine deiminase complement(730241..730687) Roseobacter denitrificans OCh 114 4197903 YP_681129.1 CDS RD1_0759 NC_008209.1 731604 732605 D RND efflux membrane fusion protein 731604..732605 Roseobacter denitrificans OCh 114 4197904 YP_681130.1 CDS RD1_0763 NC_008209.1 735357 736136 R hypothetical protein complement(735357..736136) Roseobacter denitrificans OCh 114 4197906 YP_681131.1 CDS RD1_0764 NC_008209.1 736527 736832 R hypothetical protein complement(736527..736832) Roseobacter denitrificans OCh 114 4197907 YP_681132.1 CDS RD1_0765 NC_008209.1 736914 738365 R hypothetical protein complement(736914..738365) Roseobacter denitrificans OCh 114 4197908 YP_681133.1 CDS RD1_0766 NC_008209.1 738365 739432 R serine protease complement(738365..739432) Roseobacter denitrificans OCh 114 4197870 YP_681134.1 CDS RD1_0767 NC_008209.1 739964 741988 R hypothetical protein complement(739964..741988) Roseobacter denitrificans OCh 114 4197871 YP_681135.1 CDS RD1_0768 NC_008209.1 742550 743563 R hypothetical protein complement(742550..743563) Roseobacter denitrificans OCh 114 4197872 YP_681136.1 CDS RD1_0769 NC_008209.1 743588 745483 R hypothetical protein complement(743588..745483) Roseobacter denitrificans OCh 114 4197873 YP_681137.1 CDS RD1_0770 NC_008209.1 745480 746226 R ABC transporter permease complement(745480..746226) Roseobacter denitrificans OCh 114 4197874 YP_681138.1 CDS RD1_0771 NC_008209.1 746242 747189 R ABC transporter ATP-binding protein complement(746242..747189) Roseobacter denitrificans OCh 114 4197875 YP_681139.1 CDS groEL NC_008209.1 747428 749059 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL complement(747428..749059) Roseobacter denitrificans OCh 114 4197876 YP_681140.1 CDS groES NC_008209.1 749090 749401 R chaperonin, 10 kDa complement(749090..749401) Roseobacter denitrificans OCh 114 4197877 YP_681141.1 CDS degP NC_008209.1 749679 750533 R protease Do complement(749679..750533) Roseobacter denitrificans OCh 114 4197878 YP_681142.1 CDS htpX NC_008209.1 751007 751885 R heat shock protein complement(751007..751885) Roseobacter denitrificans OCh 114 4197879 YP_681143.1 CDS RD1_0776 NC_008209.1 752192 752365 R hypothetical protein complement(752192..752365) Roseobacter denitrificans OCh 114 4197880 YP_681144.1 CDS RD1_0777 NC_008209.1 752410 752655 R hypothetical protein complement(752410..752655) Roseobacter denitrificans OCh 114 4197881 YP_681145.1 CDS RD1_0778 NC_008209.1 752732 752986 R hypothetical protein complement(752732..752986) Roseobacter denitrificans OCh 114 4197882 YP_681146.1 CDS RD1_0779 NC_008209.1 753820 755007 R hypothetical protein complement(753820..755007) Roseobacter denitrificans OCh 114 4197883 YP_681147.1 CDS RD1_0782 NC_008209.1 756285 756419 R hypothetical protein complement(756285..756419) Roseobacter denitrificans OCh 114 4197885 YP_681148.1 CDS RD1_0783 NC_008209.1 757046 758791 R sulfate transporter permease complement(757046..758791) Roseobacter denitrificans OCh 114 4197886 YP_681149.1 CDS RD1_0784 NC_008209.1 758884 760563 R hypothetical protein complement(758884..760563) Roseobacter denitrificans OCh 114 4197887 YP_681150.1 CDS RD1_0785 NC_008209.1 760575 761456 R metallo-beta-lactamase family protein complement(760575..761456) Roseobacter denitrificans OCh 114 4197888 YP_681151.1 CDS RD1_0786 NC_008209.1 761487 761915 R hypothetical protein complement(761487..761915) Roseobacter denitrificans OCh 114 4197851 YP_681152.1 CDS RD1_0787 NC_008209.1 761917 762348 R hypothetical protein complement(761917..762348) Roseobacter denitrificans OCh 114 4197852 YP_681153.1 CDS RD1_0788 NC_008209.1 762353 762565 R hypothetical protein complement(762353..762565) Roseobacter denitrificans OCh 114 4197853 YP_681154.1 CDS RD1_0789 NC_008209.1 762658 763320 R cyclic nucleotide-binding protein complement(762658..763320) Roseobacter denitrificans OCh 114 4197854 YP_681155.1 CDS RD1_0790 NC_008209.1 763317 763787 R hypothetical protein complement(763317..763787) Roseobacter denitrificans OCh 114 4197855 YP_681156.1 CDS RD1_0792 NC_008209.1 764583 765014 D hypothetical protein 764583..765014 Roseobacter denitrificans OCh 114 4197857 YP_681157.1 CDS cydA NC_008209.1 765086 766498 D cytochrome oxidase subunit II 765086..766498 Roseobacter denitrificans OCh 114 4197858 YP_681158.1 CDS cydB NC_008209.1 766511 767512 D cytochrome oxidase, subunit II 766511..767512 Roseobacter denitrificans OCh 114 4197859 YP_681159.1 CDS RD1_0795 NC_008209.1 768003 769844 R hypothetical protein complement(768003..769844) Roseobacter denitrificans OCh 114 4197860 YP_681160.1 CDS RD1_0796 NC_008209.1 769841 770821 R transposition protein complement(769841..770821) Roseobacter denitrificans OCh 114 4197861 YP_681161.1 CDS RD1_0797 NC_008209.1 770814 772985 R transposase complement(770814..772985) Roseobacter denitrificans OCh 114 4197862 YP_681162.1 CDS RD1_0798 NC_008209.1 774545 775651 D hypothetical protein 774545..775651 Roseobacter denitrificans OCh 114 4197863 YP_681163.1 CDS RD1_0799 NC_008209.1 775648 777111 D hypothetical protein 775648..777111 Roseobacter denitrificans OCh 114 4197864 YP_681164.1 CDS RD1_0800 NC_008209.1 777108 779060 D hypothetical protein 777108..779060 Roseobacter denitrificans OCh 114 4197865 YP_681165.1 CDS RD1_0801 NC_008209.1 779050 779424 D hypothetical protein 779050..779424 Roseobacter denitrificans OCh 114 4197866 YP_681166.1 CDS nifS NC_008209.1 779429 780592 D cysteine desulfurase 779429..780592 Roseobacter denitrificans OCh 114 4197867 YP_681167.1 CDS RD1_0803 NC_008209.1 780659 782659 D hypothetical protein 780659..782659 Roseobacter denitrificans OCh 114 4197868 YP_681168.1 CDS rpoD NC_008209.1 782807 785824 D RNA polymerase sigma factor 782807..785824 Roseobacter denitrificans OCh 114 4197869 YP_681169.1 CDS RD1_0805 NC_008209.1 785824 787908 D helicase 785824..787908 Roseobacter denitrificans OCh 114 4197598 YP_681170.1 CDS RD1_0806 NC_008209.1 788135 790186 D hypothetical protein 788135..790186 Roseobacter denitrificans OCh 114 4197599 YP_681171.1 CDS RD1_0807 NC_008209.1 790140 790607 D hypothetical protein 790140..790607 Roseobacter denitrificans OCh 114 4197600 YP_681172.1 CDS RD1_0808 NC_008209.1 791272 792504 D hypothetical protein 791272..792504 Roseobacter denitrificans OCh 114 4197601 YP_681173.1 CDS RD1_0809 NC_008209.1 793399 794007 R hypothetical protein complement(793399..794007) Roseobacter denitrificans OCh 114 4197602 YP_681174.1 CDS RD1_0810 NC_008209.1 794877 795125 D DNA-binding protein 794877..795125 Roseobacter denitrificans OCh 114 4197603 YP_681175.1 CDS RD1_0811 NC_008209.1 795272 795388 D hypothetical protein 795272..795388 Roseobacter denitrificans OCh 114 4197604 YP_681176.1 CDS dapF NC_008209.1 795783 796625 D diaminopimelate epimerase 795783..796625 Roseobacter denitrificans OCh 114 4197606 YP_681177.1 CDS RD1_0814 NC_008209.1 796622 797875 D MiaB-like tRNA modifying enzyme 796622..797875 Roseobacter denitrificans OCh 114 4197607 YP_681178.1 CDS RD1_0815 NC_008209.1 798098 798457 D hypothetical protein 798098..798457 Roseobacter denitrificans OCh 114 4197608 YP_681179.1 CDS RD1_0816 NC_008209.1 798543 799160 D Crp/FNR family transcriptional regulator 798543..799160 Roseobacter denitrificans OCh 114 4197609 YP_681180.1 CDS RD1_0817 NC_008209.1 799639 800385 R trypsin domain-containing protein complement(799639..800385) Roseobacter denitrificans OCh 114 4197610 YP_681181.1 CDS RD1_0818 NC_008209.1 800556 801269 R aspartate racemase complement(800556..801269) Roseobacter denitrificans OCh 114 4197611 YP_681182.1 CDS RD1_0819 NC_008209.1 801282 802295 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(801282..802295) Roseobacter denitrificans OCh 114 4197612 YP_681183.1 CDS RD1_0820 NC_008209.1 802412 803389 D LysR family transcriptional regulator 802412..803389 Roseobacter denitrificans OCh 114 4197613 YP_681184.1 CDS pta NC_008209.1 803709 804707 R phosphate acetyltransferase complement(803709..804707) Roseobacter denitrificans OCh 114 4197614 YP_681185.1 CDS RD1_0823 NC_008209.1 804753 805112 R hypothetical protein complement(804753..805112) Roseobacter denitrificans OCh 114 4197615 YP_681186.1 CDS RD1_0824 NC_008209.1 805132 806172 R hypothetical protein complement(805132..806172) Roseobacter denitrificans OCh 114 4197616 YP_681187.1 CDS xsc NC_008209.1 806289 808070 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(806289..808070) Roseobacter denitrificans OCh 114 4197617 YP_681188.1 CDS tauY NC_008209.1 808095 809489 R taurine dehydrogenase complement(808095..809489) Roseobacter denitrificans OCh 114 4197618 YP_681189.1 CDS tauX NC_008209.1 809517 809903 R taurine dehydrogenase small complement(809517..809903) Roseobacter denitrificans OCh 114 4197619 YP_681190.1 CDS RD1_0830 NC_008209.1 809928 810431 R universal stress family protein complement(809928..810431) Roseobacter denitrificans OCh 114 4197620 YP_681191.1 CDS tauM NC_008209.1 810456 811796 R C4-dicarboxylate transport system, large permease complement(810456..811796) Roseobacter denitrificans OCh 114 4197621 YP_681192.1 CDS tauL NC_008209.1 811796 812362 R C4-dicarboxylate transport system, small permease complement(811796..812362) Roseobacter denitrificans OCh 114 4197622 YP_681193.1 CDS tauK NC_008209.1 812426 813442 R ABC transporter substrate-binding protein complement(812426..813442) Roseobacter denitrificans OCh 114 4197623 YP_681194.1 CDS RD1_0834 NC_008209.1 813597 815060 D transcriptional regulator 813597..815060 Roseobacter denitrificans OCh 114 4197624 YP_681195.1 CDS RD1_0836 NC_008209.1 815119 815844 D hypothetical protein 815119..815844 Roseobacter denitrificans OCh 114 4197625 YP_681196.1 CDS RD1_0837 NC_008209.1 815841 815963 D hypothetical protein 815841..815963 Roseobacter denitrificans OCh 114 4197626 YP_681197.1 CDS RD1_0838 NC_008209.1 816180 816758 R transcriptional regulator complement(816180..816758) Roseobacter denitrificans OCh 114 4197627 YP_681198.1 CDS gabT NC_008209.1 816875 818170 D 4-aminobutyrate aminotransferase 816875..818170 Roseobacter denitrificans OCh 114 4197628 YP_681199.1 CDS cpnE NC_008209.1 818225 819661 D 5-oxovalerate dehydrogenase 818225..819661 Roseobacter denitrificans OCh 114 4197629 YP_681200.1 CDS buk NC_008209.1 819667 820767 D catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 819667..820767 Roseobacter denitrificans OCh 114 4197630 YP_681201.1 CDS ptb NC_008209.1 820764 821681 D phosphate butyryltransferase 820764..821681 Roseobacter denitrificans OCh 114 4197631 YP_681202.1 CDS RD1_0843 NC_008209.1 821782 822822 R hypothetical protein complement(821782..822822) Roseobacter denitrificans OCh 114 4197632 YP_681203.1 CDS RD1_0844 NC_008209.1 822945 823292 D hypothetical protein 822945..823292 Roseobacter denitrificans OCh 114 4197633 YP_681204.1 CDS RD1_0845 NC_008209.1 823302 824756 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase-like protein complement(823302..824756) Roseobacter denitrificans OCh 114 4197634 YP_681205.1 CDS RD1_0846 NC_008209.1 825123 826145 D ABC transporter substrate-binding protein 825123..826145 Roseobacter denitrificans OCh 114 4197635 YP_681206.1 CDS RD1_0847 NC_008209.1 826145 826726 D TRAP dicarboxylate transporter DctQ subunit 826145..826726 Roseobacter denitrificans OCh 114 4197636 YP_681207.1 CDS RD1_0848 NC_008209.1 826786 828099 D TRAP dicarboxylate transporter subunit DctM 826786..828099 Roseobacter denitrificans OCh 114 4197637 YP_681208.1 CDS RD1_0849 NC_008209.1 828118 828474 R hypothetical protein complement(828118..828474) Roseobacter denitrificans OCh 114 4197638 YP_681209.1 CDS RD1_0850 NC_008209.1 828643 829530 D hydrolase 828643..829530 Roseobacter denitrificans OCh 114 4197639 YP_681210.1 CDS RD1_0851 NC_008209.1 829624 830187 D glyoxalase family protein 829624..830187 Roseobacter denitrificans OCh 114 4197640 YP_681211.1 CDS RD1_0853 NC_008209.1 830424 831143 R GntR family transcriptional regulator complement(830424..831143) Roseobacter denitrificans OCh 114 4197641 YP_681212.1 CDS RD1_0854 NC_008209.1 831377 832564 D branched-chain amino acid ABC transporter substrate-binding protein 831377..832564 Roseobacter denitrificans OCh 114 4197642 YP_681213.1 CDS RD1_0855 NC_008209.1 832657 833526 D branched-chain amino acid ABC transporter permease 832657..833526 Roseobacter denitrificans OCh 114 4197643 YP_681214.1 CDS RD1_0856 NC_008209.1 833534 834511 D branched-chain amino acid ABC transporter permease 833534..834511 Roseobacter denitrificans OCh 114 4197644 YP_681215.1 CDS RD1_0858 NC_008209.1 834508 835290 D branched-chain amino acid ABC transporter ATP-binding protein 834508..835290 Roseobacter denitrificans OCh 114 4197645 YP_681216.1 CDS RD1_0859 NC_008209.1 835294 836016 D branched-chain amino acid ABC transporter ATP-binding protein 835294..836016 Roseobacter denitrificans OCh 114 4197646 YP_681217.1 CDS hyuE NC_008209.1 836023 836706 D hydantoin racemase 836023..836706 Roseobacter denitrificans OCh 114 4197647 YP_681218.1 CDS RD1_0863 NC_008209.1 837137 838363 R hypothetical protein complement(837137..838363) Roseobacter denitrificans OCh 114 4197648 YP_681219.1 CDS RD1_0864 NC_008209.1 838755 839891 D ribose ABC transporter substrate-binding protein 838755..839891 Roseobacter denitrificans OCh 114 4197649 YP_681220.1 CDS RD1_0865 NC_008209.1 839976 841535 D sugar ABC transporter ATP-binding protein 839976..841535 Roseobacter denitrificans OCh 114 4197650 YP_681221.1 CDS RD1_0866 NC_008209.1 841532 842587 D ribose ABC transporter permease 841532..842587 Roseobacter denitrificans OCh 114 4197651 YP_681222.1 CDS rbsC NC_008209.1 842594 843574 D ribose ABC transporter permease 842594..843574 Roseobacter denitrificans OCh 114 4197652 YP_681223.1 CDS gnl NC_008209.1 843588 844505 D gluconolactonase 843588..844505 Roseobacter denitrificans OCh 114 4197653 YP_681224.1 CDS RD1_0869 NC_008209.1 844513 846414 R type I secretion target repeat-containing protein complement(844513..846414) Roseobacter denitrificans OCh 114 4197654 YP_681225.1 CDS RD1_0870 NC_008209.1 848030 848956 D hypothetical protein 848030..848956 Roseobacter denitrificans OCh 114 4197655 YP_681226.1 CDS moxR NC_008209.1 849044 850000 D MoxR-like ATPase 849044..850000 Roseobacter denitrificans OCh 114 4197656 YP_681227.1 CDS RD1_0873 NC_008209.1 849997 850902 D hypothetical protein 849997..850902 Roseobacter denitrificans OCh 114 4197657 YP_681228.1 CDS RD1_0874 NC_008209.1 850899 851270 D hypothetical protein 850899..851270 Roseobacter denitrificans OCh 114 4197658 YP_681229.1 CDS RD1_0875 NC_008209.1 851263 852225 D hypothetical protein 851263..852225 Roseobacter denitrificans OCh 114 4197659 YP_681230.1 CDS RD1_0876 NC_008209.1 852222 853121 D hypothetical protein 852222..853121 Roseobacter denitrificans OCh 114 4197660 YP_681231.1 CDS RD1_0877 NC_008209.1 853202 853792 D hypothetical protein 853202..853792 Roseobacter denitrificans OCh 114 4197661 YP_681232.1 CDS RD1_0878 NC_008209.1 853789 854979 D hypothetical protein 853789..854979 Roseobacter denitrificans OCh 114 4197662 YP_681233.1 CDS RD1_0879 NC_008209.1 855150 855869 D LuxR family transcriptional regulator 855150..855869 Roseobacter denitrificans OCh 114 4197663 YP_681234.1 CDS RD1_0880 NC_008209.1 855881 857038 D hypothetical protein 855881..857038 Roseobacter denitrificans OCh 114 4197664 YP_681235.1 CDS RD1_0881 NC_008209.1 857107 859299 D histidine kinase 857107..859299 Roseobacter denitrificans OCh 114 4197665 YP_681236.1 CDS RD1_0882 NC_008209.1 859333 859992 D hypothetical protein 859333..859992 Roseobacter denitrificans OCh 114 4197666 YP_681237.1 CDS RD1_0883 NC_008209.1 859989 860336 D hypothetical protein 859989..860336 Roseobacter denitrificans OCh 114 4197667 YP_681238.1 CDS RD1_0884 NC_008209.1 860416 861228 R hypothetical protein complement(860416..861228) Roseobacter denitrificans OCh 114 4197668 YP_681239.1 CDS RD1_0885 NC_008209.1 861352 862395 D hypothetical protein 861352..862395 Roseobacter denitrificans OCh 114 4197669 YP_681240.1 CDS RD1_0886 NC_008209.1 862406 863029 R hypothetical protein complement(862406..863029) Roseobacter denitrificans OCh 114 4197670 YP_681241.1 CDS flhA NC_008209.1 863195 864307 D glutathione-dependent formaldehyde dehydrogenase 863195..864307 Roseobacter denitrificans OCh 114 4197671 YP_681242.1 CDS RD1_0888 NC_008209.1 864316 865140 D S-formylglutathione hydrolase 864316..865140 Roseobacter denitrificans OCh 114 4197672 YP_681243.1 CDS RD1_0889 NC_008209.1 865176 865577 D cytochrome c family protein 865176..865577 Roseobacter denitrificans OCh 114 4197673 YP_681244.1 CDS moxF NC_008209.1 865703 867505 D methanol dehydrogenase, large subunit 865703..867505 Roseobacter denitrificans OCh 114 4197674 YP_681245.1 CDS cycB NC_008209.1 867614 868123 D cytochrome c553I 867614..868123 Roseobacter denitrificans OCh 114 4197675 YP_681246.1 CDS RD1_0892 NC_008209.1 868107 868952 D methanol oxidation protein 868107..868952 Roseobacter denitrificans OCh 114 4197676 YP_681247.1 CDS RD1_0893 NC_008209.1 868949 869503 D hypothetical protein 868949..869503 Roseobacter denitrificans OCh 114 4197677 YP_681248.1 CDS RD1_0894 NC_008209.1 869504 870316 R hypothetical protein complement(869504..870316) Roseobacter denitrificans OCh 114 4197678 YP_681249.1 CDS RD1_0895 NC_008209.1 870313 871254 R hypothetical protein complement(870313..871254) Roseobacter denitrificans OCh 114 4197679 YP_681250.1 CDS RD1_0896 NC_008209.1 871238 871783 R hypothetical protein complement(871238..871783) Roseobacter denitrificans OCh 114 4197680 YP_681251.1 CDS RD1_0897 NC_008209.1 871783 872265 R hypothetical protein complement(871783..872265) Roseobacter denitrificans OCh 114 4197681 YP_681252.1 CDS RD1_0898 NC_008209.1 872428 873600 D hypothetical protein 872428..873600 Roseobacter denitrificans OCh 114 4197682 YP_681253.1 CDS RD1_0899 NC_008209.1 873613 874584 D hypothetical protein 873613..874584 Roseobacter denitrificans OCh 114 4197683 YP_681254.1 CDS RD1_0900 NC_008209.1 874616 875053 D hypothetical protein 874616..875053 Roseobacter denitrificans OCh 114 4197684 YP_681255.1 CDS RD1_0901 NC_008209.1 875071 875322 D hypothetical protein 875071..875322 Roseobacter denitrificans OCh 114 4197685 YP_681256.1 CDS RD1_0902 NC_008209.1 875312 876289 D ABC transporter substrate-binding protein 875312..876289 Roseobacter denitrificans OCh 114 4197686 YP_681257.1 CDS ssuC NC_008209.1 876273 877046 D aliphatic sulfonates transport permease 876273..877046 Roseobacter denitrificans OCh 114 4197687 YP_681258.1 CDS RD1_0904 NC_008209.1 877043 877642 D ABC transporter 877043..877642 Roseobacter denitrificans OCh 114 4197688 YP_681259.1 CDS RD1_0905 NC_008209.1 877733 878827 R hypothetical protein complement(877733..878827) Roseobacter denitrificans OCh 114 4197689 YP_681260.1 CDS RD1_0906 NC_008209.1 878830 879798 R hypothetical protein complement(878830..879798) Roseobacter denitrificans OCh 114 4197690 YP_681261.1 CDS RD1_0907 NC_008209.1 879803 881326 R hypothetical protein complement(879803..881326) Roseobacter denitrificans OCh 114 4197691 YP_681262.1 CDS RD1_0908 NC_008209.1 881372 881812 D hypothetical protein 881372..881812 Roseobacter denitrificans OCh 114 4197692 YP_681263.1 CDS RD1_0909 NC_008209.1 881931 882401 D hypothetical protein 881931..882401 Roseobacter denitrificans OCh 114 4197693 YP_681264.1 CDS RD1_0910 NC_008209.1 882462 882719 R hypothetical protein complement(882462..882719) Roseobacter denitrificans OCh 114 4197694 YP_681265.1 CDS RD1_0911 NC_008209.1 882817 884043 R lipoprotein complement(882817..884043) Roseobacter denitrificans OCh 114 4197695 YP_681266.1 CDS RD1_0912 NC_008209.1 884072 884551 R hypothetical protein complement(884072..884551) Roseobacter denitrificans OCh 114 4197696 YP_681267.1 CDS RD1_0913 NC_008209.1 884548 884721 R hypothetical protein complement(884548..884721) Roseobacter denitrificans OCh 114 4197697 YP_681268.1 CDS RD1_0914 NC_008209.1 884718 884870 R hypothetical protein complement(884718..884870) Roseobacter denitrificans OCh 114 4197698 YP_681269.1 CDS RD1_0915 NC_008209.1 885057 886685 D ferric iron ABC transporter permease 885057..886685 Roseobacter denitrificans OCh 114 4197699 YP_681270.1 CDS RD1_0916 NC_008209.1 886740 887753 R iron ABC transporter substrate-binding protein complement(886740..887753) Roseobacter denitrificans OCh 114 4197700 YP_681271.1 CDS RD1_0917 NC_008209.1 887949 888830 R permease complement(887949..888830) Roseobacter denitrificans OCh 114 4197701 YP_681272.1 CDS zntR NC_008209.1 889215 889652 D HTH-type transcriptional regulator ZntR 889215..889652 Roseobacter denitrificans OCh 114 4197702 YP_681273.1 CDS RD1_0919 NC_008209.1 889782 890717 R zinc/manganese/iron ABC transporter permease complement(889782..890717) Roseobacter denitrificans OCh 114 4197703 YP_681274.1 CDS RD1_0920 NC_008209.1 890717 891934 R zinc/manganese/iron ABC transporter permease complement(890717..891934) Roseobacter denitrificans OCh 114 4197704 YP_681275.1 CDS troB NC_008209.1 891931 892764 R zinc ABC transporter ATP-binding protein complement(891931..892764) Roseobacter denitrificans OCh 114 4197705 YP_681276.1 CDS RD1_0922 NC_008209.1 892761 893717 R metal ABC transporter substrate-binding protein complement(892761..893717) Roseobacter denitrificans OCh 114 4197706 YP_681277.1 CDS RD1_0923 NC_008209.1 893899 894099 D hypothetical protein 893899..894099 Roseobacter denitrificans OCh 114 4197707 YP_681278.1 CDS amt-2 NC_008209.1 894348 895721 D ammonium transporter 894348..895721 Roseobacter denitrificans OCh 114 4197708 YP_681279.1 CDS gntR NC_008209.1 895831 896565 D GntR family transcriptional regulator 895831..896565 Roseobacter denitrificans OCh 114 4197709 YP_681280.1 CDS RD1_0926 NC_008209.1 896652 896756 R hypothetical protein complement(896652..896756) Roseobacter denitrificans OCh 114 4197710 YP_681281.1 CDS gabD NC_008209.1 896864 898342 R succinate-semialdehyde dehydrogenase complement(896864..898342) Roseobacter denitrificans OCh 114 4197711 YP_681282.1 CDS RD1_0928 NC_008209.1 898424 899206 D hypothetical protein 898424..899206 Roseobacter denitrificans OCh 114 4197712 YP_681283.1 CDS cln NC_008209.1 899332 900555 D creatinase 899332..900555 Roseobacter denitrificans OCh 114 4197713 YP_681284.1 CDS RD1_0930 NC_008209.1 900705 900968 D hypothetical protein 900705..900968 Roseobacter denitrificans OCh 114 4197714 YP_681285.1 CDS RD1_0931 NC_008209.1 900979 901629 D hypothetical protein 900979..901629 Roseobacter denitrificans OCh 114 4197715 YP_681286.1 CDS RD1_0932 NC_008209.1 901640 902020 R HIT-like protein complement(901640..902020) Roseobacter denitrificans OCh 114 4197716 YP_681287.1 CDS smpB NC_008209.1 902105 902767 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 902105..902767 Roseobacter denitrificans OCh 114 4197717 YP_681288.1 CDS mst NC_008209.1 902853 903707 D 3-mercaptopyruvate sulfurtransferase 902853..903707 Roseobacter denitrificans OCh 114 4197718 YP_681289.1 CDS tyrB NC_008209.1 903707 904891 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 903707..904891 Roseobacter denitrificans OCh 114 4197719 YP_681290.1 CDS RD1_0936 NC_008209.1 905435 906781 R ammonium ABC transporter permease complement(905435..906781) Roseobacter denitrificans OCh 114 4197720 YP_681291.1 CDS glnB NC_008209.1 906809 907147 R nitrogen regulatory protein P-II complement(906809..907147) Roseobacter denitrificans OCh 114 4197721 YP_681292.1 CDS pbpC NC_008209.1 907404 909590 D 1A family penicillin-binding protein 907404..909590 Roseobacter denitrificans OCh 114 4197722 YP_681293.1 CDS RD1_0939 NC_008209.1 909602 910201 R toluene tolerance family protein complement(909602..910201) Roseobacter denitrificans OCh 114 4197723 YP_681294.1 CDS RD1_0940 NC_008209.1 910216 910986 R VacJ-like lipoprotein complement(910216..910986) Roseobacter denitrificans OCh 114 4197724 YP_681295.1 CDS RD1_0941 NC_008209.1 911453 911911 D endoribonuclease L-PSP family protein 911453..911911 Roseobacter denitrificans OCh 114 4197725 YP_681296.1 CDS RD1_0942 NC_008209.1 911908 912672 D glycerophosphoryl diester phosphodiesterase 911908..912672 Roseobacter denitrificans OCh 114 4197726 YP_681297.1 CDS RD1_0943 NC_008209.1 912722 913909 D hypothetical protein 912722..913909 Roseobacter denitrificans OCh 114 4197727 YP_681298.1 CDS phhB NC_008209.1 913906 914202 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 913906..914202 Roseobacter denitrificans OCh 114 4197728 YP_681299.1 CDS RD1_0945 NC_008209.1 914209 915054 D hypothetical protein 914209..915054 Roseobacter denitrificans OCh 114 4197729 YP_681300.1 CDS RD1_0946 NC_008209.1 915105 915593 R anti-oxidant AhpCTSA family protein complement(915105..915593) Roseobacter denitrificans OCh 114 4197730 YP_681301.1 CDS RD1_0947 NC_008209.1 915689 916897 D pyridine nucleotide-disulfide oxidoreductase 915689..916897 Roseobacter denitrificans OCh 114 4197731 YP_681302.1 CDS RD1_0948 NC_008209.1 916894 917451 D methyltransferase 916894..917451 Roseobacter denitrificans OCh 114 4197732 YP_681303.1 CDS map NC_008209.1 917647 918531 R methionine aminopeptidase complement(917647..918531) Roseobacter denitrificans OCh 114 4197733 YP_681304.1 CDS sfsA NC_008209.1 918585 919292 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(918585..919292) Roseobacter denitrificans OCh 114 4197734 YP_681305.1 CDS RD1_0951 NC_008209.1 919343 920068 D molybdopterin binding domain-containing protein 919343..920068 Roseobacter denitrificans OCh 114 4197735 YP_681306.1 CDS RD1_0952 NC_008209.1 920065 920805 D acetyltransferase 920065..920805 Roseobacter denitrificans OCh 114 4197736 YP_681307.1 CDS RD1_0953 NC_008209.1 920798 921370 D hypothetical protein 920798..921370 Roseobacter denitrificans OCh 114 4197737 YP_681308.1 CDS RD1_0954 NC_008209.1 921367 922326 D OmpA family domain-containing protein 921367..922326 Roseobacter denitrificans OCh 114 4197738 YP_681309.1 CDS RD1_0955 NC_008209.1 922375 923283 R LysR family transcriptional regulator complement(922375..923283) Roseobacter denitrificans OCh 114 4197739 YP_681310.1 CDS RD1_0956 NC_008209.1 923735 924178 D hypothetical protein 923735..924178 Roseobacter denitrificans OCh 114 4197740 YP_681311.1 CDS fadH NC_008209.1 924183 926210 R 2,4-dienoyl-CoA reductase complement(924183..926210) Roseobacter denitrificans OCh 114 4197741 YP_681312.1 CDS RD1_0958 NC_008209.1 926195 926371 D hypothetical protein 926195..926371 Roseobacter denitrificans OCh 114 4197742 YP_681313.1 CDS RD1_0959 NC_008209.1 926249 926428 R hypothetical protein complement(926249..926428) Roseobacter denitrificans OCh 114 4197743 YP_681314.1 CDS RD1_0960 NC_008209.1 926427 926909 D hydrolase NUDIX family domain-containing protein 926427..926909 Roseobacter denitrificans OCh 114 4197744 YP_681315.1 CDS RD1_0961 NC_008209.1 926906 927502 R acetyltransferase complement(926906..927502) Roseobacter denitrificans OCh 114 4197745 YP_681316.1 CDS RD1_0962 NC_008209.1 927505 928491 R PfkB family kinase complement(927505..928491) Roseobacter denitrificans OCh 114 4197746 YP_681317.1 CDS nth NC_008209.1 928488 929234 R endonuclease III complement(928488..929234) Roseobacter denitrificans OCh 114 4197747 YP_681318.1 CDS ada NC_008209.1 929311 930177 D ADA regulatory protein 929311..930177 Roseobacter denitrificans OCh 114 4197748 YP_681319.1 CDS RD1_0966 NC_008209.1 930192 930320 D hypothetical protein 930192..930320 Roseobacter denitrificans OCh 114 4197749 YP_681320.1 CDS RD1_0967 NC_008209.1 930304 930969 D OmpA family domain-containing protein 930304..930969 Roseobacter denitrificans OCh 114 4197750 YP_681321.1 CDS RD1_0968 NC_008209.1 931072 931614 D NADPH-dependent FMN reductase domain-containing protein 931072..931614 Roseobacter denitrificans OCh 114 4197751 YP_681322.1 CDS RD1_0969 NC_008209.1 931632 932663 R oxidoreductase, FAD-binding complement(931632..932663) Roseobacter denitrificans OCh 114 4197752 YP_681323.1 CDS RD1_0970 NC_008209.1 932727 933428 D hypothetical protein 932727..933428 Roseobacter denitrificans OCh 114 4197963 YP_681324.1 CDS RD1_0971 NC_008209.1 933430 935343 R Slt family transglycosylase complement(933430..935343) Roseobacter denitrificans OCh 114 4197964 YP_681325.1 CDS dapA NC_008209.1 935530 936405 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 935530..936405 Roseobacter denitrificans OCh 114 4197965 YP_681326.1 CDS dmsC NC_008209.1 936492 937364 R anaerobic dimethyl sulfoxide reductase subunit C complement(936492..937364) Roseobacter denitrificans OCh 114 4197966 YP_681327.1 CDS RD1_0974 NC_008209.1 937364 938122 R 4Fe-4S ferredoxin complement(937364..938122) Roseobacter denitrificans OCh 114 4197967 YP_681328.1 CDS phsA NC_008209.1 938208 941027 R thiosulfate reductase complement(938208..941027) Roseobacter denitrificans OCh 114 4197968 YP_681329.1 CDS RD1_0976 NC_008209.1 941047 941478 D hypothetical protein 941047..941478 Roseobacter denitrificans OCh 114 4197969 YP_681330.1 CDS xsc NC_008209.1 941444 943222 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(941444..943222) Roseobacter denitrificans OCh 114 4197970 YP_681331.1 CDS RD1_0978 NC_008209.1 943316 944797 R GntR family transcriptional regulator complement(943316..944797) Roseobacter denitrificans OCh 114 4197971 YP_681332.1 CDS ppk2 NC_008209.1 945033 945923 D polyphosphate kinase 945033..945923 Roseobacter denitrificans OCh 114 4197972 YP_681333.1 CDS RD1_0980 NC_008209.1 945947 946186 D hypothetical protein 945947..946186 Roseobacter denitrificans OCh 114 4197973 YP_681334.1 CDS tpa NC_008209.1 946277 947668 R taurine--pyruvate aminotransferase complement(946277..947668) Roseobacter denitrificans OCh 114 4197974 YP_681335.1 CDS tauA NC_008209.1 948318 949319 D taurine ABC transporter substrate-binding protein 948318..949319 Roseobacter denitrificans OCh 114 4197975 YP_681336.1 CDS tauB NC_008209.1 949432 950238 D taurine ABC transporter ATP-binding protein 949432..950238 Roseobacter denitrificans OCh 114 4197976 YP_681337.1 CDS tauC NC_008209.1 950235 951503 D taurine ABC transporter permease 950235..951503 Roseobacter denitrificans OCh 114 4197977 YP_681338.1 CDS RD1_0985 NC_008209.1 951485 951598 D hypothetical protein 951485..951598 Roseobacter denitrificans OCh 114 4197978 YP_681339.1 CDS RD1_0986 NC_008209.1 951649 951753 D hypothetical protein 951649..951753 Roseobacter denitrificans OCh 114 4197979 YP_681340.1 CDS RD1_0987 NC_008209.1 951731 952783 D fatty acid desaturase 951731..952783 Roseobacter denitrificans OCh 114 4197980 YP_681341.1 CDS deaD NC_008209.1 952996 955113 R DEAD/DEAH box helicase complement(952996..955113) Roseobacter denitrificans OCh 114 4197981 YP_681342.1 CDS RD1_0990 NC_008209.1 955308 956246 D branched-chain amino acid aminotransferase 955308..956246 Roseobacter denitrificans OCh 114 4197944 YP_681343.1 CDS RD1_0991 NC_008209.1 956253 957581 R hypothetical protein complement(956253..957581) Roseobacter denitrificans OCh 114 4197945 YP_681344.1 CDS RD1_0992 NC_008209.1 957791 958105 D ArsR family transcriptional regulator 957791..958105 Roseobacter denitrificans OCh 114 4197946 YP_681345.1 CDS RD1_0993 NC_008209.1 958180 959382 D oxidoreductase 958180..959382 Roseobacter denitrificans OCh 114 4197947 YP_681346.1 CDS RD1_0995 NC_008209.1 959637 959963 R hypothetical protein complement(959637..959963) Roseobacter denitrificans OCh 114 4197949 YP_681347.1 CDS RD1_0996 NC_008209.1 960096 960785 D hypothetical protein 960096..960785 Roseobacter denitrificans OCh 114 4197950 YP_681348.1 CDS RD1_0997 NC_008209.1 960841 961485 D transcriptional regulator 960841..961485 Roseobacter denitrificans OCh 114 4197951 YP_681349.1 CDS accA NC_008209.1 961518 962480 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(961518..962480) Roseobacter denitrificans OCh 114 4197952 YP_681350.1 CDS RD1_0999 NC_008209.1 962539 963135 R amino acid transporter LysE complement(962539..963135) Roseobacter denitrificans OCh 114 4197953 YP_681351.1 CDS RD1_1000 NC_008209.1 963208 963660 D AsnC family transcriptional regulator 963208..963660 Roseobacter denitrificans OCh 114 4197954 YP_681352.1 CDS citE NC_008209.1 963676 964632 R citrate lyase subunit beta complement(963676..964632) Roseobacter denitrificans OCh 114 4197955 YP_681353.1 CDS RD1_1002 NC_008209.1 964892 965893 D hypothetical protein 964892..965893 Roseobacter denitrificans OCh 114 4197956 YP_681354.1 CDS RD1_1003 NC_008209.1 965932 966897 D hypothetical protein 965932..966897 Roseobacter denitrificans OCh 114 4197957 YP_681355.1 CDS dat NC_008209.1 966894 967760 D D-alanine aminotransferase 966894..967760 Roseobacter denitrificans OCh 114 4197958 YP_681356.1 CDS nodN NC_008209.1 967826 968275 D nodulation protein N-like protein 967826..968275 Roseobacter denitrificans OCh 114 4197959 YP_681357.1 CDS RD1_1006 NC_008209.1 968353 968664 R hypothetical protein complement(968353..968664) Roseobacter denitrificans OCh 114 4197960 YP_681358.1 CDS pyk NC_008209.1 968887 970335 D pyruvate kinase 968887..970335 Roseobacter denitrificans OCh 114 4197961 YP_681359.1 CDS RD1_1008 NC_008209.1 970370 971116 R hypothetical protein complement(970370..971116) Roseobacter denitrificans OCh 114 4197962 YP_681360.1 CDS rpmI NC_008209.1 971357 971557 D 50S ribosomal protein L35 971357..971557 Roseobacter denitrificans OCh 114 4198255 YP_681361.1 CDS rplT NC_008209.1 971570 971935 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 971570..971935 Roseobacter denitrificans OCh 114 4198256 YP_681362.1 CDS RD1_1011 NC_008209.1 972360 973028 D hypothetical protein 972360..973028 Roseobacter denitrificans OCh 114 4198257 YP_681363.1 CDS pheS NC_008209.1 973220 974293 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 973220..974293 Roseobacter denitrificans OCh 114 4198258 YP_681364.1 CDS pheT NC_008209.1 974748 977147 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 974748..977147 Roseobacter denitrificans OCh 114 4198259 YP_681365.1 CDS RD1_1014 NC_008209.1 977204 977653 D hypothetical protein 977204..977653 Roseobacter denitrificans OCh 114 4198260 YP_681366.1 CDS mscL NC_008209.1 977823 978251 D homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 977823..978251 Roseobacter denitrificans OCh 114 4198261 YP_681367.1 CDS RD1_1016 NC_008209.1 978448 979773 R hypothetical protein complement(978448..979773) Roseobacter denitrificans OCh 114 4198262 YP_681368.1 CDS RD1_1017 NC_008209.1 979770 979916 R hypothetical protein complement(979770..979916) Roseobacter denitrificans OCh 114 4198263 YP_681369.1 CDS RD1_1018 NC_008209.1 980171 982012 D serine proteinase 980171..982012 Roseobacter denitrificans OCh 114 4198264 YP_681370.1 CDS RD1_1019 NC_008209.1 982025 983314 D hypothetical protein 982025..983314 Roseobacter denitrificans OCh 114 4198265 YP_681371.1 CDS RD1_1020 NC_008209.1 983314 986430 D hypothetical protein 983314..986430 Roseobacter denitrificans OCh 114 4198266 YP_681372.1 CDS RD1_1021 NC_008209.1 986461 989160 D hypothetical protein 986461..989160 Roseobacter denitrificans OCh 114 4198267 YP_681373.1 CDS RD1_1023 NC_008209.1 989247 990197 D hypothetical protein 989247..990197 Roseobacter denitrificans OCh 114 4198268 YP_681374.1 CDS RD1_1024 NC_008209.1 990208 992115 D hypothetical protein 990208..992115 Roseobacter denitrificans OCh 114 4198269 YP_681375.1 CDS RD1_1025 NC_008209.1 992125 992904 D ABC transporter ATP-binding protein 992125..992904 Roseobacter denitrificans OCh 114 4198270 YP_681376.1 CDS RD1_1026 NC_008209.1 992904 994100 D ABC transporter permease 992904..994100 Roseobacter denitrificans OCh 114 4198271 YP_681377.1 CDS RD1_1027 NC_008209.1 994097 995656 D hypothetical protein 994097..995656 Roseobacter denitrificans OCh 114 4198272 YP_681378.1 CDS RD1_1028 NC_008209.1 995763 996659 R hypothetical protein complement(995763..996659) Roseobacter denitrificans OCh 114 4198273 YP_681379.1 CDS RD1_1029 NC_008209.1 996656 997612 R hypothetical protein complement(996656..997612) Roseobacter denitrificans OCh 114 4198274 YP_681380.1 CDS RD1_1030 NC_008209.1 997690 998346 D hypothetical protein 997690..998346 Roseobacter denitrificans OCh 114 4198275 YP_681381.1 CDS RD1_1031 NC_008209.1 998478 999623 D Rieske (2Fe-2S) domain-containing protein 998478..999623 Roseobacter denitrificans OCh 114 4198276 YP_681382.1 CDS RD1_1032 NC_008209.1 999682 1000089 D hypothetical protein 999682..1000089 Roseobacter denitrificans OCh 114 4198277 YP_681383.1 CDS ald NC_008209.1 1000161 1001279 R alanine dehydrogenase complement(1000161..1001279) Roseobacter denitrificans OCh 114 4198278 YP_681384.1 CDS RD1_1034 NC_008209.1 1001415 1001879 D AsnC family transcriptional regulator 1001415..1001879 Roseobacter denitrificans OCh 114 4198279 YP_681385.1 CDS RD1_1035 NC_008209.1 1001879 1002481 D hypothetical protein 1001879..1002481 Roseobacter denitrificans OCh 114 4198280 YP_681386.1 CDS RD1_1036 NC_008209.1 1002646 1002765 R hypothetical protein complement(1002646..1002765) Roseobacter denitrificans OCh 114 4198281 YP_681387.1 CDS RD1_1037 NC_008209.1 1002748 1002879 D hypothetical protein 1002748..1002879 Roseobacter denitrificans OCh 114 4198282 YP_681388.1 CDS RD1_1038 NC_008209.1 1002966 1003664 D hypothetical protein 1002966..1003664 Roseobacter denitrificans OCh 114 4198283 YP_681389.1 CDS RD1_1040 NC_008209.1 1003728 1004714 D alcohol dehydrogenase 1003728..1004714 Roseobacter denitrificans OCh 114 4198284 YP_681390.1 CDS qor NC_008209.1 1004749 1005723 D quinone oxidoreductase 1004749..1005723 Roseobacter denitrificans OCh 114 4198285 YP_681391.1 CDS RD1_1042 NC_008209.1 1005720 1006349 R ribonuclease T2 family protein complement(1005720..1006349) Roseobacter denitrificans OCh 114 4198286 YP_681392.1 CDS RD1_1043 NC_008209.1 1006487 1007263 D hypothetical protein 1006487..1007263 Roseobacter denitrificans OCh 114 4198287 YP_681393.1 CDS RD1_1044 NC_008209.1 1007399 1007740 D endoribonuclease L-PSP family protein 1007399..1007740 Roseobacter denitrificans OCh 114 4198288 YP_681394.1 CDS recR NC_008209.1 1007851 1008444 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1007851..1008444) Roseobacter denitrificans OCh 114 4198289 YP_681395.1 CDS RD1_1046 NC_008209.1 1008501 1008845 R hypothetical protein complement(1008501..1008845) Roseobacter denitrificans OCh 114 4198290 YP_681396.1 CDS dnaX NC_008209.1 1008911 1010659 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1008911..1010659) Roseobacter denitrificans OCh 114 4198291 YP_681397.1 CDS idnD NC_008209.1 1010849 1011895 R L-idonate 5-dehydrogenase complement(1010849..1011895) Roseobacter denitrificans OCh 114 4198292 YP_681398.1 CDS RD1_1049 NC_008209.1 1011908 1013185 R TRAP dicarboxylate transporter subunit DctM complement(1011908..1013185) Roseobacter denitrificans OCh 114 4198293 YP_681399.1 CDS RD1_1051 NC_008209.1 1013188 1013682 R TRAP dicarboxylate transporter DctQ subunit complement(1013188..1013682) Roseobacter denitrificans OCh 114 4198294 YP_681400.1 CDS RD1_1052 NC_008209.1 1013751 1014728 R C4-dicarboxylate transport system, substrate-binding protein complement(1013751..1014728) Roseobacter denitrificans OCh 114 4198295 YP_681401.1 CDS RD1_1053 NC_008209.1 1014745 1015470 R GntR family transcriptional regulator complement(1014745..1015470) Roseobacter denitrificans OCh 114 4198296 YP_681402.1 CDS RD1_1054 NC_008209.1 1015660 1016475 R phosphonate ABC transporter permease complement(1015660..1016475) Roseobacter denitrificans OCh 114 4198297 YP_681403.1 CDS phnE NC_008209.1 1016475 1017296 R phosphonate ABC transporter permease complement(1016475..1017296) Roseobacter denitrificans OCh 114 4198298 YP_681404.1 CDS phnC NC_008209.1 1017293 1018084 R phosphonate ABC transporter ATP-binding protein complement(1017293..1018084) Roseobacter denitrificans OCh 114 4198299 YP_681405.1 CDS phnD NC_008209.1 1018152 1019126 R phosphonate ABC transporter substrate-binding protein complement(1018152..1019126) Roseobacter denitrificans OCh 114 4198300 YP_681406.1 CDS RD1_1058 NC_008209.1 1019268 1019378 D hypothetical protein 1019268..1019378 Roseobacter denitrificans OCh 114 4198301 YP_681407.1 CDS RD1_1059 NC_008209.1 1019553 1020578 D iron ABC transporter substrate-binding protein 1019553..1020578 Roseobacter denitrificans OCh 114 4198302 YP_681408.1 CDS RD1_1060 NC_008209.1 1020582 1022801 D iron ABC transporter permease 1020582..1022801 Roseobacter denitrificans OCh 114 4198303 YP_681409.1 CDS fbpC NC_008209.1 1022798 1023874 D Fe-ABC transporter ATP-binding protein 1022798..1023874 Roseobacter denitrificans OCh 114 4198304 YP_681410.1 CDS RD1_1062 NC_008209.1 1023875 1024438 D phosphoglycerate mutase 1023875..1024438 Roseobacter denitrificans OCh 114 4198305 YP_681411.1 CDS RD1_1064 NC_008209.1 1024946 1025125 D hypothetical protein 1024946..1025125 Roseobacter denitrificans OCh 114 4198307 YP_681412.1 CDS murA NC_008209.1 1025130 1026398 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1025130..1026398 Roseobacter denitrificans OCh 114 4198308 YP_681413.1 CDS RD1_1066 NC_008209.1 1026398 1026865 D hypothetical protein 1026398..1026865 Roseobacter denitrificans OCh 114 4198309 YP_681414.1 CDS hisD NC_008209.1 1026911 1028224 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1026911..1028224 Roseobacter denitrificans OCh 114 4198310 YP_681415.1 CDS RD1_1069 NC_008209.1 1028294 1028773 D hypothetical protein 1028294..1028773 Roseobacter denitrificans OCh 114 4198311 YP_681416.1 CDS arsC NC_008209.1 1028774 1029235 D arsenate reductase 1028774..1029235 Roseobacter denitrificans OCh 114 4198349 YP_681417.1 CDS RD1_1072 NC_008209.1 1029242 1030804 R cyclooxygenase complement(1029242..1030804) Roseobacter denitrificans OCh 114 4198350 YP_681418.1 CDS RD1_1073 NC_008209.1 1030990 1031304 D hypothetical protein 1030990..1031304 Roseobacter denitrificans OCh 114 4198351 YP_681419.1 CDS RD1_1074 NC_008209.1 1031350 1031757 D hypothetical protein 1031350..1031757 Roseobacter denitrificans OCh 114 4198352 YP_681420.1 CDS RD1_1075 NC_008209.1 1031747 1032334 D hypothetical protein 1031747..1032334 Roseobacter denitrificans OCh 114 4198353 YP_681421.1 CDS RD1_1076 NC_008209.1 1032339 1032740 R hypothetical protein complement(1032339..1032740) Roseobacter denitrificans OCh 114 4198354 YP_681422.1 CDS RD1_1077 NC_008209.1 1032815 1034092 R hypothetical protein complement(1032815..1034092) Roseobacter denitrificans OCh 114 4198355 YP_681423.1 CDS RD1_1078 NC_008209.1 1034091 1034384 D modification methylase 1034091..1034384 Roseobacter denitrificans OCh 114 4198356 YP_681424.1 CDS RD1_1079 NC_008209.1 1034399 1035049 R DNA methyltransferase complement(1034399..1035049) Roseobacter denitrificans OCh 114 4198357 YP_681425.1 CDS RD1_1080 NC_008209.1 1035049 1035729 R hypothetical protein complement(1035049..1035729) Roseobacter denitrificans OCh 114 4198358 YP_681426.1 CDS lepA NC_008209.1 1035772 1037571 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1035772..1037571 Roseobacter denitrificans OCh 114 4198359 YP_681427.1 CDS RD1_1082 NC_008209.1 1037678 1038313 D hypothetical protein 1037678..1038313 Roseobacter denitrificans OCh 114 4198360 YP_681428.1 CDS RD1_1083 NC_008209.1 1038647 1038826 D hypothetical protein 1038647..1038826 Roseobacter denitrificans OCh 114 4198361 YP_681429.1 CDS RD1_1084 NC_008209.1 1038887 1039201 D hypothetical protein 1038887..1039201 Roseobacter denitrificans OCh 114 4198362 YP_681430.1 CDS RD1_1085 NC_008209.1 1039244 1039360 R EcnA/B family entericidin complement(1039244..1039360) Roseobacter denitrificans OCh 114 4198363 YP_681431.1 CDS RD1_1087 NC_008209.1 1039587 1040066 R hypothetical protein complement(1039587..1040066) Roseobacter denitrificans OCh 114 4198364 YP_681432.1 CDS RD1_1088 NC_008209.1 1040063 1040677 R hypothetical protein complement(1040063..1040677) Roseobacter denitrificans OCh 114 4198365 YP_681433.1 CDS RD1_1089 NC_008209.1 1040700 1040840 R hypothetical protein complement(1040700..1040840) Roseobacter denitrificans OCh 114 4198366 YP_681434.1 CDS RD1_1090 NC_008209.1 1040815 1041963 R hypothetical protein complement(1040815..1041963) Roseobacter denitrificans OCh 114 4198367 YP_681435.1 CDS RD1_1092 NC_008209.1 1041960 1042544 R phosphoglycerate mutase complement(1041960..1042544) Roseobacter denitrificans OCh 114 4198368 YP_681436.1 CDS RD1_1093 NC_008209.1 1042541 1043617 R glycosyltransferase complement(1042541..1043617) Roseobacter denitrificans OCh 114 4197579 YP_681437.1 CDS RD1_1094 NC_008209.1 1043614 1044861 R glycosyl transferase family protein complement(1043614..1044861) Roseobacter denitrificans OCh 114 4197580 YP_681438.1 CDS RD1_1095 NC_008209.1 1044858 1046090 R hypothetical protein complement(1044858..1046090) Roseobacter denitrificans OCh 114 4197581 YP_681439.1 CDS RD1_1096 NC_008209.1 1046348 1048726 D mechanosensitive ion channel protein 1046348..1048726 Roseobacter denitrificans OCh 114 4197582 YP_681440.1 CDS RD1_1097 NC_008209.1 1048926 1049036 D hypothetical protein 1048926..1049036 Roseobacter denitrificans OCh 114 4197583 YP_681441.1 CDS RD1_1098 NC_008209.1 1049060 1049737 R hypothetical protein complement(1049060..1049737) Roseobacter denitrificans OCh 114 4197584 YP_681442.1 CDS RD1_1099 NC_008209.1 1050004 1051158 R oligopeptide ABC transporter permease complement(1050004..1051158) Roseobacter denitrificans OCh 114 4197585 YP_681443.1 CDS RD1_1100 NC_008209.1 1051155 1052183 R oligopeptide ABC transporter permease complement(1051155..1052183) Roseobacter denitrificans OCh 114 4197586 YP_681444.1 CDS RD1_1101 NC_008209.1 1052180 1054105 R peptide ABC transporter substrate-binding protein complement(1052180..1054105) Roseobacter denitrificans OCh 114 4197587 YP_681445.1 CDS RD1_1102 NC_008209.1 1054098 1055873 R ABC transporter ATP-binding protein complement(1054098..1055873) Roseobacter denitrificans OCh 114 4197588 YP_681446.1 CDS RD1_1103 NC_008209.1 1055981 1056529 D hypothetical protein 1055981..1056529 Roseobacter denitrificans OCh 114 4197589 YP_681447.1 CDS rpe NC_008209.1 1056551 1057243 R ribulose-5-phosphate 3-epimerase complement(1056551..1057243) Roseobacter denitrificans OCh 114 4197590 YP_681448.1 CDS RD1_1106 NC_008209.1 1057382 1059079 R long chain fatty acid acyl-CoA ligase complement(1057382..1059079) Roseobacter denitrificans OCh 114 4197591 YP_681449.1 CDS RD1_1107 NC_008209.1 1059172 1059921 R hypothetical protein complement(1059172..1059921) Roseobacter denitrificans OCh 114 4197592 YP_681450.1 CDS idnD NC_008209.1 1059989 1061020 R L-idonate 5-dehydrogenase complement(1059989..1061020) Roseobacter denitrificans OCh 114 4197593 YP_681451.1 CDS idnO NC_008209.1 1061133 1061891 D catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate; gluconate 5-dehydrogenase 1061133..1061891 Roseobacter denitrificans OCh 114 4197594 YP_681452.1 CDS RD1_1110 NC_008209.1 1061940 1062599 D hypothetical protein 1061940..1062599 Roseobacter denitrificans OCh 114 4197595 YP_681453.1 CDS RD1_1111 NC_008209.1 1062596 1063993 R exonuclease complement(1062596..1063993) Roseobacter denitrificans OCh 114 4197596 YP_681454.1 CDS RD1_1112 NC_008209.1 1063995 1064519 R hypothetical protein complement(1063995..1064519) Roseobacter denitrificans OCh 114 4197597 YP_681455.1 CDS RD1_1113 NC_008209.1 1064553 1066379 R nucleotidyltransferase complement(1064553..1066379) Roseobacter denitrificans OCh 114 4197559 YP_681456.1 CDS RD1_1114 NC_008209.1 1066473 1068275 R sodium symporter complement(1066473..1068275) Roseobacter denitrificans OCh 114 4197560 YP_681457.1 CDS RD1_1115 NC_008209.1 1068279 1068563 R hypothetical protein complement(1068279..1068563) Roseobacter denitrificans OCh 114 4197561 YP_681458.1 CDS adk-2 NC_008209.1 1068620 1069306 R adenylate kinase complement(1068620..1069306) Roseobacter denitrificans OCh 114 4197562 YP_681459.1 CDS acsA NC_008209.1 1069311 1071233 R acetyl-coenzyme A synthetase complement(1069311..1071233) Roseobacter denitrificans OCh 114 4197563 YP_681460.1 CDS RD1_1118 NC_008209.1 1071707 1072297 D ErfK/YbiS/YcfS/YnhG family protein 1071707..1072297 Roseobacter denitrificans OCh 114 4197564 YP_681461.1 CDS rarD NC_008209.1 1072516 1073412 D rarD protein 1072516..1073412 Roseobacter denitrificans OCh 114 4197565 YP_681462.1 CDS RD1_1120 NC_008209.1 1073413 1074546 R peptidoglycan binding domain-containing protein complement(1073413..1074546) Roseobacter denitrificans OCh 114 4197566 YP_681463.1 CDS RD1_1121 NC_008209.1 1075024 1083273 D hypothetical protein 1075024..1083273 Roseobacter denitrificans OCh 114 4197567 YP_681464.1 CDS RD1_1122 NC_008209.1 1083101 1085944 D hypothetical protein 1083101..1085944 Roseobacter denitrificans OCh 114 4197568 YP_681465.1 CDS RD1_1123 NC_008209.1 1085941 1087248 R HlyD family secretion protein complement(1085941..1087248) Roseobacter denitrificans OCh 114 4197569 YP_681466.1 CDS RD1_1124 NC_008209.1 1087245 1089515 R toxin secretion ABC transporter ATP-binding component complement(1087245..1089515) Roseobacter denitrificans OCh 114 4197570 YP_681467.1 CDS aggA NC_008209.1 1089512 1090924 R agglutination protein complement(1089512..1090924) Roseobacter denitrificans OCh 114 4197571 YP_681468.1 CDS RD1_1126 NC_008209.1 1091113 1091778 D OmpA family domain-containing protein 1091113..1091778 Roseobacter denitrificans OCh 114 4197572 YP_681469.1 CDS RD1_1127 NC_008209.1 1091883 1092440 D hypothetical protein 1091883..1092440 Roseobacter denitrificans OCh 114 4197573 YP_681470.1 CDS RD1_1128 NC_008209.1 1092548 1093390 D hypothetical protein 1092548..1093390 Roseobacter denitrificans OCh 114 4197574 YP_681471.1 CDS cysE NC_008209.1 1093480 1094286 R serine acetyltransferase complement(1093480..1094286) Roseobacter denitrificans OCh 114 4197575 YP_681472.1 CDS RD1_1130 NC_008209.1 1094289 1095221 R hypothetical protein complement(1094289..1095221) Roseobacter denitrificans OCh 114 4197576 YP_681473.1 CDS RD1_1131 NC_008209.1 1095302 1095523 R tautomerase complement(1095302..1095523) Roseobacter denitrificans OCh 114 4197577 YP_681474.1 CDS RD1_1132 NC_008209.1 1095528 1095911 R hypothetical protein complement(1095528..1095911) Roseobacter denitrificans OCh 114 4197578 YP_681475.1 CDS gst NC_008209.1 1095908 1096516 R glutathione S-transferase complement(1095908..1096516) Roseobacter denitrificans OCh 114 4197541 YP_681476.1 CDS RD1_1134 NC_008209.1 1096623 1097513 D LysR family transcriptional regulator 1096623..1097513 Roseobacter denitrificans OCh 114 4197542 YP_681477.1 CDS RD1_1135 NC_008209.1 1097607 1098203 R HTH-type transcriptional regulator acrR complement(1097607..1098203) Roseobacter denitrificans OCh 114 4197543 YP_681478.1 CDS RD1_1136 NC_008209.1 1098287 1098916 D hypothetical protein 1098287..1098916 Roseobacter denitrificans OCh 114 4197544 YP_681479.1 CDS RD1_1137 NC_008209.1 1098929 1099060 D hypothetical protein 1098929..1099060 Roseobacter denitrificans OCh 114 4197545 YP_681480.1 CDS RD1_1138 NC_008209.1 1099378 1099566 R hypothetical protein complement(1099378..1099566) Roseobacter denitrificans OCh 114 4197546 YP_681481.1 CDS RD1_1140 NC_008209.1 1099933 1105137 R hypothetical protein complement(1099933..1105137) Roseobacter denitrificans OCh 114 4197547 YP_681482.1 CDS RD1_1142 NC_008209.1 1105366 1105665 D hypothetical protein 1105366..1105665 Roseobacter denitrificans OCh 114 4197548 YP_681483.1 CDS RD1_1143 NC_008209.1 1106443 1106709 D hypothetical protein 1106443..1106709 Roseobacter denitrificans OCh 114 4197549 YP_681484.2 CDS RD1_1144 NC_008209.1 1106745 1107557 D integrase catalytic subunit 1106745..1107557 Roseobacter denitrificans OCh 114 4197550 YP_681485.1 CDS RD1_1145 NC_008209.1 1107704 1108630 R hypothetical protein complement(1107704..1108630) Roseobacter denitrificans OCh 114 4197551 YP_681486.1 CDS RD1_1149 NC_008209.1 1111422 1112258 R glycosyltransferase complement(1111422..1112258) Roseobacter denitrificans OCh 114 4197554 YP_681487.1 CDS pqqE NC_008209.1 1112322 1113428 R pyrroloquinoline quinone biosynthesis protein PqqE complement(1112322..1113428) Roseobacter denitrificans OCh 114 4197555 YP_681488.1 CDS pqqD NC_008209.1 1113425 1113700 R coenzyme PQQ synthesis protein D complement(1113425..1113700) Roseobacter denitrificans OCh 114 4197556 YP_681489.1 CDS pqqC NC_008209.1 1113702 1114451 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(1113702..1114451) Roseobacter denitrificans OCh 114 4197557 YP_681490.1 CDS pqqB NC_008209.1 1114453 1115346 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(1114453..1115346) Roseobacter denitrificans OCh 114 4197558 YP_681491.1 CDS pqqA NC_008209.1 1115371 1115478 R Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA complement(1115371..1115478) Roseobacter denitrificans OCh 114 4197521 YP_681492.1 CDS prrA NC_008209.1 1115576 1116262 R transcriptional regulatory protein PrrA complement(1115576..1116262) Roseobacter denitrificans OCh 114 4197522 YP_681493.1 CDS resE NC_008209.1 1116267 1117958 R sensor protein resE complement(1116267..1117958) Roseobacter denitrificans OCh 114 4197523 YP_681494.1 CDS RD1_1157 NC_008209.1 1118006 1118209 D hypothetical protein 1118006..1118209 Roseobacter denitrificans OCh 114 4197524 YP_681495.1 CDS RD1_1158 NC_008209.1 1118220 1119011 R ABC transporter permease complement(1118220..1119011) Roseobacter denitrificans OCh 114 4197525 YP_681496.1 CDS RD1_1159 NC_008209.1 1119008 1119727 R ABC transporter ATP-binding protein complement(1119008..1119727) Roseobacter denitrificans OCh 114 4197526 YP_681497.1 CDS mclA NC_008209.1 1120047 1121024 R malyl-CoA lyase complement(1120047..1121024) Roseobacter denitrificans OCh 114 4197527 YP_681498.1 CDS RD1_1161 NC_008209.1 1121486 1122724 D aminotransferase 1121486..1122724 Roseobacter denitrificans OCh 114 4197528 YP_681499.1 CDS sucC NC_008209.1 1122758 1123957 D catalyzes the formation of malyl-CoA from malate and CoA; malate--CoA ligase subunit beta 1122758..1123957 Roseobacter denitrificans OCh 114 4197529 YP_681500.1 CDS mtkB NC_008209.1 1123954 1124841 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1123954..1124841 Roseobacter denitrificans OCh 114 4197530 YP_681501.1 CDS gyaR NC_008209.1 1124841 1125812 D glyoxylate reductase 1124841..1125812 Roseobacter denitrificans OCh 114 4197531 YP_681502.1 CDS glyA NC_008209.1 1125851 1127140 D serine hydroxymethyltransferase 1125851..1127140 Roseobacter denitrificans OCh 114 4197532 YP_681503.1 CDS RD1_1166 NC_008209.1 1127593 1128129 D DnaJ domain-containing protein 1127593..1128129 Roseobacter denitrificans OCh 114 4197533 YP_681504.1 CDS RD1_1167 NC_008209.1 1128427 1128690 D hypothetical protein 1128427..1128690 Roseobacter denitrificans OCh 114 4197534 YP_681505.1 CDS mcpA NC_008209.1 1129920 1132295 R methyl-accepting chemotaxis protein complement(1129920..1132295) Roseobacter denitrificans OCh 114 4197535 YP_681506.1 CDS RD1_1169 NC_008209.1 1132531 1133445 R LysR family transcriptional regulator complement(1132531..1133445) Roseobacter denitrificans OCh 114 4197536 YP_681507.1 CDS RD1_1170 NC_008209.1 1133539 1133766 D hypothetical protein 1133539..1133766 Roseobacter denitrificans OCh 114 4197537 YP_681508.1 CDS RD1_1171 NC_008209.1 1134060 1135694 R type I secretion target repeat-containing protein complement(1134060..1135694) Roseobacter denitrificans OCh 114 4197538 YP_681509.1 CDS RD1_1172 NC_008209.1 1137610 1137876 R hypothetical protein complement(1137610..1137876) Roseobacter denitrificans OCh 114 4197539 YP_681510.1 CDS RD1_1173 NC_008209.1 1137873 1138553 R hypothetical protein complement(1137873..1138553) Roseobacter denitrificans OCh 114 4197540 YP_681511.1 CDS RD1_1174 NC_008209.1 1138634 1139695 R Rieske (2Fe-2S) domain-containing protein complement(1138634..1139695) Roseobacter denitrificans OCh 114 4197502 YP_681512.1 CDS RD1_1175 NC_008209.1 1139692 1140069 R hypothetical protein complement(1139692..1140069) Roseobacter denitrificans OCh 114 4197503 YP_681513.1 CDS aspS NC_008209.1 1140739 1142514 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1140739..1142514 Roseobacter denitrificans OCh 114 4197504 YP_681514.1 CDS RD1_1177 NC_008209.1 1142552 1143274 D acetyltransferase 1142552..1143274 Roseobacter denitrificans OCh 114 4197505 YP_681515.1 CDS RD1_1178 NC_008209.1 1143287 1144006 R response regulator complement(1143287..1144006) Roseobacter denitrificans OCh 114 4197506 YP_681516.1 CDS RD1_1179 NC_008209.1 1144232 1144636 D hypothetical protein 1144232..1144636 Roseobacter denitrificans OCh 114 4197507 YP_681517.1 CDS RD1_1180 NC_008209.1 1144659 1144955 D hypothetical protein 1144659..1144955 Roseobacter denitrificans OCh 114 4197508 YP_681518.1 CDS RD1_1181 NC_008209.1 1144891 1145610 R hypothetical protein complement(1144891..1145610) Roseobacter denitrificans OCh 114 4197509 YP_681519.1 CDS RD1_1182 NC_008209.1 1145607 1146185 R nitroreductase family protein complement(1145607..1146185) Roseobacter denitrificans OCh 114 4197510 YP_681520.1 CDS RD1_1183 NC_008209.1 1146200 1147300 R histone deacetylase family protein complement(1146200..1147300) Roseobacter denitrificans OCh 114 4197511 YP_681521.1 CDS trpS NC_008209.1 1147425 1148438 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1147425..1148438) Roseobacter denitrificans OCh 114 4197512 YP_681522.1 CDS RD1_1186 NC_008209.1 1148486 1149205 D rhomboid family protein 1148486..1149205 Roseobacter denitrificans OCh 114 4197513 YP_681523.1 CDS mviN NC_008209.1 1149180 1150745 R virulence factor MviN-like protein complement(1149180..1150745) Roseobacter denitrificans OCh 114 4197514 YP_681524.1 CDS glnD NC_008209.1 1150742 1153549 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1150742..1153549) Roseobacter denitrificans OCh 114 4197515 YP_681525.1 CDS RD1_1189 NC_008209.1 1153530 1154699 R hypothetical protein complement(1153530..1154699) Roseobacter denitrificans OCh 114 4197516 YP_681526.1 CDS RD1_1190 NC_008209.1 1154785 1155642 D tetrapyrrole methylase domain-containing protein 1154785..1155642 Roseobacter denitrificans OCh 114 4197517 YP_681527.1 CDS RD1_1191 NC_008209.1 1155639 1156028 D hypothetical protein 1155639..1156028 Roseobacter denitrificans OCh 114 4197518 YP_681528.1 CDS gshB NC_008209.1 1156204 1157145 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1156204..1157145 Roseobacter denitrificans OCh 114 4197519 YP_681529.1 CDS RD1_1193 NC_008209.1 1157150 1158649 R Mg chelatase-like protein complement(1157150..1158649) Roseobacter denitrificans OCh 114 4197520 YP_681530.1 CDS RD1_1194 NC_008209.1 1158729 1159412 R hypothetical protein complement(1158729..1159412) Roseobacter denitrificans OCh 114 4197482 YP_681531.1 CDS RD1_1195 NC_008209.1 1159472 1160053 R phosphoglycerate mutase complement(1159472..1160053) Roseobacter denitrificans OCh 114 4197483 YP_681532.1 CDS cobP NC_008209.1 1160050 1160571 R bifunctional adenosylcobalamin biosynthesis protein cobP complement(1160050..1160571) Roseobacter denitrificans OCh 114 4197484 YP_681533.1 CDS rpoH2 NC_008209.1 1160669 1161547 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production; RNA polymerase factor sigma-32 1160669..1161547 Roseobacter denitrificans OCh 114 4197485 YP_681534.1 CDS RD1_1198 NC_008209.1 1161547 1162359 D hypothetical protein 1161547..1162359 Roseobacter denitrificans OCh 114 4197486 YP_681535.1 CDS coaBC NC_008209.1 1162429 1163622 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1162429..1163622 Roseobacter denitrificans OCh 114 4197487 YP_681536.1 CDS dut NC_008209.1 1163631 1164089 D deoxyuridine 5'-triphosphate nucleotidohydrolase 1163631..1164089 Roseobacter denitrificans OCh 114 4197488 YP_681537.1 CDS moeB NC_008209.1 1164089 1165150 D molybdopterin biosynthesis protein MoeB 1164089..1165150 Roseobacter denitrificans OCh 114 4197489 YP_681538.1 CDS dcp NC_008209.1 1165211 1167226 D dipeptidyl carboxypeptidase 1165211..1167226 Roseobacter denitrificans OCh 114 4197490 YP_681539.1 CDS RD1_1204 NC_008209.1 1167230 1168162 R 2-hydroxyacid dehydrogenase complement(1167230..1168162) Roseobacter denitrificans OCh 114 4197491 YP_681540.1 CDS rodA NC_008209.1 1168183 1169322 R rod shape-determining protein complement(1168183..1169322) Roseobacter denitrificans OCh 114 4197492 YP_681541.1 CDS pbpA NC_008209.1 1169319 1171262 R penicillin-binding protein 2 complement(1169319..1171262) Roseobacter denitrificans OCh 114 4197493 YP_681542.1 CDS mreD NC_008209.1 1171294 1171833 R MreD protein complement(1171294..1171833) Roseobacter denitrificans OCh 114 4197494 YP_681543.1 CDS mreC NC_008209.1 1171830 1172714 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1171830..1172714) Roseobacter denitrificans OCh 114 4197495 YP_681544.1 CDS mreB NC_008209.1 1172789 1173877 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1172789..1173877) Roseobacter denitrificans OCh 114 4197496 YP_681545.1 CDS RD1_1210 NC_008209.1 1174009 1174845 R amino acid ABC transporter substrate-binding protein complement(1174009..1174845) Roseobacter denitrificans OCh 114 4197497 YP_681546.1 CDS leuA NC_008209.1 1174978 1176546 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1174978..1176546) Roseobacter denitrificans OCh 114 4197498 YP_681547.1 CDS csgA NC_008209.1 1176804 1177469 D C factor, cell signaling protein 1176804..1177469 Roseobacter denitrificans OCh 114 4197499 YP_681548.1 CDS RD1_1213 NC_008209.1 1177466 1178992 D hypothetical protein 1177466..1178992 Roseobacter denitrificans OCh 114 4197500 YP_681549.1 CDS RD1_1214 NC_008209.1 1179003 1180391 R MORN repeat-containing protein complement(1179003..1180391) Roseobacter denitrificans OCh 114 4197501 YP_681550.1 CDS nadE NC_008209.1 1180567 1182225 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1180567..1182225 Roseobacter denitrificans OCh 114 4197463 YP_681551.1 CDS RD1_1216 NC_008209.1 1182331 1183140 D hypothetical protein 1182331..1183140 Roseobacter denitrificans OCh 114 4197464 YP_681552.1 CDS RD1_1217 NC_008209.1 1183160 1184089 R metallo-beta-lactamase family protein complement(1183160..1184089) Roseobacter denitrificans OCh 114 4197465 YP_681553.1 CDS RD1_1218 NC_008209.1 1184109 1184222 R hypothetical protein complement(1184109..1184222) Roseobacter denitrificans OCh 114 4197466 YP_681554.1 CDS gltX NC_008209.1 1184266 1185591 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1184266..1185591 Roseobacter denitrificans OCh 114 4197467 YP_681555.1 CDS RD1_1220 NC_008209.1 1185667 1187016 D MATE efflux pump protein 1185667..1187016 Roseobacter denitrificans OCh 114 4197468 YP_681556.1 CDS RD1_1221 NC_008209.1 1186963 1187553 R hypothetical protein complement(1186963..1187553) Roseobacter denitrificans OCh 114 4197469 YP_681557.1 CDS gcvT NC_008209.1 1187893 1189017 D glycine cleavage system protein T 1187893..1189017 Roseobacter denitrificans OCh 114 4197470 YP_681558.1 CDS gcvH NC_008209.1 1189035 1189394 D glycine cleavage system H protein 1189035..1189394 Roseobacter denitrificans OCh 114 4197471 YP_681559.1 CDS gcvP NC_008209.1 1189446 1192295 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1189446..1192295 Roseobacter denitrificans OCh 114 4197472 YP_681560.1 CDS RD1_1226 NC_008209.1 1192342 1194858 R ABC transporter permease complement(1192342..1194858) Roseobacter denitrificans OCh 114 4197473 YP_681561.1 CDS RD1_1227 NC_008209.1 1194855 1195544 R ABC transporter ATP-binding protein complement(1194855..1195544) Roseobacter denitrificans OCh 114 4197474 YP_681562.1 CDS RD1_1228 NC_008209.1 1195596 1196234 D acyl-CoA thioesterase 1195596..1196234 Roseobacter denitrificans OCh 114 4197475 YP_681563.1 CDS cspA NC_008209.1 1196296 1196502 R cold shock protein CspA complement(1196296..1196502) Roseobacter denitrificans OCh 114 4197476 YP_681564.1 CDS RD1_1230 NC_008209.1 1196882 1197370 R hypothetical protein complement(1196882..1197370) Roseobacter denitrificans OCh 114 4197477 YP_681565.1 CDS RD1_1231 NC_008209.1 1197756 1198019 D hypothetical protein 1197756..1198019 Roseobacter denitrificans OCh 114 4197478 YP_681566.1 CDS cspA NC_008209.1 1198093 1198299 R cold shock protein CspA complement(1198093..1198299) Roseobacter denitrificans OCh 114 4197479 YP_681567.1 CDS RD1_1233 NC_008209.1 1198421 1198534 R hypothetical protein complement(1198421..1198534) Roseobacter denitrificans OCh 114 4197480 YP_681568.1 CDS RD1_1234 NC_008209.1 1198762 1199289 R outer membrane lipoprotein complement(1198762..1199289) Roseobacter denitrificans OCh 114 4197481 YP_681569.1 CDS RD1_1235 NC_008209.1 1199466 1199855 D hypothetical protein 1199466..1199855 Roseobacter denitrificans OCh 114 4197443 YP_681570.1 CDS RD1_1236 NC_008209.1 1199866 1200423 D hypothetical protein 1199866..1200423 Roseobacter denitrificans OCh 114 4197444 YP_681571.1 CDS RD1_1237 NC_008209.1 1201858 1203513 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(1201858..1203513) Roseobacter denitrificans OCh 114 4197445 YP_681572.1 CDS RD1_1238 NC_008209.1 1203665 1203772 D hypothetical protein 1203665..1203772 Roseobacter denitrificans OCh 114 4197446 YP_681573.1 CDS RD1_1239 NC_008209.1 1203769 1203939 D hypothetical protein 1203769..1203939 Roseobacter denitrificans OCh 114 4197447 YP_681574.1 CDS RD1_1240 NC_008209.1 1204107 1205396 D hypothetical protein 1204107..1205396 Roseobacter denitrificans OCh 114 4197448 YP_681575.1 CDS RD1_1242 NC_008209.1 1205398 1205886 D MOSC domain-containing protein 1205398..1205886 Roseobacter denitrificans OCh 114 4197449 YP_681576.1 CDS nadD NC_008209.1 1205923 1206522 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 1205923..1206522 Roseobacter denitrificans OCh 114 4197450 YP_681577.1 CDS dacB NC_008209.1 1206605 1208104 D D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1206605..1208104 Roseobacter denitrificans OCh 114 4197451 YP_681578.1 CDS RD1_1245 NC_008209.1 1208152 1208574 R hypothetical protein complement(1208152..1208574) Roseobacter denitrificans OCh 114 4197452 YP_681579.1 CDS lysK NC_008209.1 1208693 1210276 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 1208693..1210276 Roseobacter denitrificans OCh 114 4197453 YP_681580.1 CDS RD1_1247 NC_008209.1 1210337 1210738 D hypothetical protein 1210337..1210738 Roseobacter denitrificans OCh 114 4197454 YP_681581.1 CDS RD1_1248 NC_008209.1 1210745 1211452 R hypothetical protein complement(1210745..1211452) Roseobacter denitrificans OCh 114 4197455 YP_681582.1 CDS RD1_1249 NC_008209.1 1211593 1211823 D hypothetical protein 1211593..1211823 Roseobacter denitrificans OCh 114 4197456 YP_681583.1 CDS RD1_1250 NC_008209.1 1211993 1212418 R hypothetical protein complement(1211993..1212418) Roseobacter denitrificans OCh 114 4197457 YP_681584.1 CDS RD1_1251 NC_008209.1 1212509 1213018 R hypothetical protein complement(1212509..1213018) Roseobacter denitrificans OCh 114 4197458 YP_681585.1 CDS RD1_1252 NC_008209.1 1213116 1213604 R hypothetical protein complement(1213116..1213604) Roseobacter denitrificans OCh 114 4197459 YP_681586.1 CDS RD1_1253 NC_008209.1 1213647 1214165 R hypothetical protein complement(1213647..1214165) Roseobacter denitrificans OCh 114 4197460 YP_681587.1 CDS uvrB NC_008209.1 1214822 1217020 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1214822..1217020) Roseobacter denitrificans OCh 114 4197461 YP_681588.1 CDS RD1_1255 NC_008209.1 1217303 1217614 D NADH-ubiquinone oxidoreductase 18 kDa subunit 1217303..1217614 Roseobacter denitrificans OCh 114 4197462 YP_681589.1 CDS RD1_1256 NC_008209.1 1217619 1217720 R hypothetical protein complement(1217619..1217720) Roseobacter denitrificans OCh 114 4197425 YP_681590.1 CDS cpdB NC_008209.1 1218382 1220253 R 2`,3`-cyclic-nucleotide 2`-phosphodiesterase complement(1218382..1220253) Roseobacter denitrificans OCh 114 4197427 YP_681591.1 CDS RD1_1259 NC_008209.1 1220393 1221361 D hydrolase 1220393..1221361 Roseobacter denitrificans OCh 114 4197428 YP_681592.1 CDS RD1_1260 NC_008209.1 1221466 1221933 D hypothetical protein 1221466..1221933 Roseobacter denitrificans OCh 114 4197429 YP_681593.1 CDS pheA NC_008209.1 1221915 1222772 R prephenate dehydratase complement(1221915..1222772) Roseobacter denitrificans OCh 114 4197430 YP_681594.1 CDS cycM NC_008209.1 1222892 1223395 D cytochrome c552 1222892..1223395 Roseobacter denitrificans OCh 114 4197431 YP_681595.1 CDS RD1_1263 NC_008209.1 1223579 1225510 D ABC transporter substrate-binding protein 1223579..1225510 Roseobacter denitrificans OCh 114 4197432 YP_681596.1 CDS RD1_1264 NC_008209.1 1225515 1226606 D peptide ABC transporter permease 1225515..1226606 Roseobacter denitrificans OCh 114 4197433 YP_681597.1 CDS RD1_1265 NC_008209.1 1226610 1227788 D ABC transporter permease 1226610..1227788 Roseobacter denitrificans OCh 114 4197434 YP_681598.1 CDS RD1_1266 NC_008209.1 1227785 1229365 D peptide ABC transporter ATP-binding protein 1227785..1229365 Roseobacter denitrificans OCh 114 4197435 YP_681599.1 CDS hemN NC_008209.1 1229472 1230827 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1229472..1230827) Roseobacter denitrificans OCh 114 4197436 YP_681600.1 CDS fnrL NC_008209.1 1230891 1231634 D transcriptional activator protein FnrL 1230891..1231634 Roseobacter denitrificans OCh 114 4197437 YP_681601.1 CDS RD1_1269 NC_008209.1 1231656 1232492 R universal stress family protein complement(1231656..1232492) Roseobacter denitrificans OCh 114 4197438 YP_681602.1 CDS ccoN NC_008209.1 1232700 1234313 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1232700..1234313 Roseobacter denitrificans OCh 114 4197439 YP_681603.1 CDS ccoO NC_008209.1 1234328 1235053 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1234328..1235053 Roseobacter denitrificans OCh 114 4197440 YP_681604.1 CDS ccoQ NC_008209.1 1235066 1235251 D cytochrome c oxidase, cbb3-type subunit IV 1235066..1235251 Roseobacter denitrificans OCh 114 4197441 YP_681605.1 CDS ccoP NC_008209.1 1235248 1236114 D cytochrome c oxidase, cbb3-type subunit III 1235248..1236114 Roseobacter denitrificans OCh 114 4197442 YP_681606.1 CDS rdxB NC_008209.1 1236222 1237658 D RdxB protein 1236222..1237658 Roseobacter denitrificans OCh 114 4197406 YP_681607.1 CDS rdxH NC_008209.1 1237655 1238119 D RdxH protein 1237655..1238119 Roseobacter denitrificans OCh 114 4197407 YP_681608.1 CDS rdxI NC_008209.1 1238116 1240305 D RdxI protein 1238116..1240305 Roseobacter denitrificans OCh 114 4197408 YP_681609.1 CDS rdxS NC_008209.1 1240302 1240463 D RdxS protein 1240302..1240463 Roseobacter denitrificans OCh 114 4197409 YP_681610.1 CDS dacA NC_008209.1 1240664 1242121 R D-alanyl-D-alanine carboxypeptidase complement(1240664..1242121) Roseobacter denitrificans OCh 114 4197410 YP_681611.1 CDS clpS NC_008209.1 1242515 1242856 D ATP-dependent Clp protease 1242515..1242856 Roseobacter denitrificans OCh 114 4197411 YP_681612.1 CDS rsmC NC_008209.1 1242906 1243856 D ribosomal RNA small subunit methyltransferase C 1242906..1243856 Roseobacter denitrificans OCh 114 4197412 YP_681613.1 CDS RD1_1281 NC_008209.1 1243881 1244681 D oxidoreductase 1243881..1244681 Roseobacter denitrificans OCh 114 4197413 YP_681614.1 CDS hemF NC_008209.1 1244756 1245649 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1244756..1245649 Roseobacter denitrificans OCh 114 4197414 YP_681615.1 CDS hemC NC_008209.1 1245809 1246753 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1245809..1246753) Roseobacter denitrificans OCh 114 4197415 YP_681616.1 CDS hemE NC_008209.1 1246857 1247891 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1246857..1247891 Roseobacter denitrificans OCh 114 4197416 YP_681617.1 CDS dctP NC_008209.1 1248177 1249214 D C4-dicarboxylate ABC transporter substrate-binding protein 1248177..1249214 Roseobacter denitrificans OCh 114 4197418 YP_681618.1 CDS RD1_1287 NC_008209.1 1249272 1249844 D hypothetical protein 1249272..1249844 Roseobacter denitrificans OCh 114 4197419 YP_681619.1 CDS dctM NC_008209.1 1249852 1251207 D TRAP dicarboxylate transporter permease component 1249852..1251207 Roseobacter denitrificans OCh 114 4197420 YP_681620.1 CDS RD1_1289 NC_008209.1 1251554 1252009 D hypothetical protein 1251554..1252009 Roseobacter denitrificans OCh 114 4197421 YP_681621.1 CDS RD1_1290 NC_008209.1 1252029 1252520 R hypothetical protein complement(1252029..1252520) Roseobacter denitrificans OCh 114 4197422 YP_681622.1 CDS RD1_1291 NC_008209.1 1252598 1254259 R dipeptide ABC transporter complement(1252598..1254259) Roseobacter denitrificans OCh 114 4197423 YP_681623.1 CDS RD1_1292 NC_008209.1 1254791 1256206 R hypothetical protein complement(1254791..1256206) Roseobacter denitrificans OCh 114 4197424 YP_681624.1 CDS RD1_1293 NC_008209.1 1256203 1257300 R cytosine deaminase complement(1256203..1257300) Roseobacter denitrificans OCh 114 4197387 YP_681625.1 CDS RD1_1294 NC_008209.1 1257612 1258001 D L-PSP family endoribonuclease 1257612..1258001 Roseobacter denitrificans OCh 114 4197388 YP_681626.1 CDS RD1_1295 NC_008209.1 1258180 1258413 R hypothetical protein complement(1258180..1258413) Roseobacter denitrificans OCh 114 4197389 YP_681627.1 CDS RD1_1296 NC_008209.1 1258382 1258666 R hypothetical protein complement(1258382..1258666) Roseobacter denitrificans OCh 114 4197390 YP_681628.1 CDS RD1_1297 NC_008209.1 1258840 1258956 R hypothetical protein complement(1258840..1258956) Roseobacter denitrificans OCh 114 4197391 YP_681629.1 CDS RD1_1298 NC_008209.1 1259145 1260029 D transmembrane protein 1259145..1260029 Roseobacter denitrificans OCh 114 4197392 YP_681630.1 CDS RD1_1299 NC_008209.1 1259986 1260795 R chromosome partitioning protein complement(1259986..1260795) Roseobacter denitrificans OCh 114 4197393 YP_681631.1 CDS RD1_1300 NC_008209.1 1261044 1261373 R hypothetical protein complement(1261044..1261373) Roseobacter denitrificans OCh 114 4197394 YP_681632.1 CDS RD1_1301 NC_008209.1 1261441 1261632 R hypothetical protein complement(1261441..1261632) Roseobacter denitrificans OCh 114 4197395 YP_681633.1 CDS RD1_1302 NC_008209.1 1261631 1261948 D hypothetical protein 1261631..1261948 Roseobacter denitrificans OCh 114 4197396 YP_681634.1 CDS nas NC_008209.1 1262010 1263047 R zinc metalloproteinase nas-13 complement(1262010..1263047) Roseobacter denitrificans OCh 114 4197397 YP_681635.1 CDS rpmE NC_008209.1 1263294 1263515 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1263294..1263515) Roseobacter denitrificans OCh 114 4197398 YP_681636.1 CDS rplS NC_008209.1 1263527 1263910 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1263527..1263910) Roseobacter denitrificans OCh 114 4197399 YP_681637.1 CDS RD1_1306 NC_008209.1 1264181 1264600 R hypothetical protein complement(1264181..1264600) Roseobacter denitrificans OCh 114 4197400 YP_681638.1 CDS trmD NC_008209.1 1264821 1265546 R tRNA (guanine-N1)-methyltransferase complement(1264821..1265546) Roseobacter denitrificans OCh 114 4197401 YP_681639.1 CDS rimM NC_008209.1 1265614 1266120 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1265614..1266120) Roseobacter denitrificans OCh 114 4197402 YP_681640.1 CDS RD1_1310 NC_008209.1 1266117 1266305 R hypothetical protein complement(1266117..1266305) Roseobacter denitrificans OCh 114 4197403 YP_681641.1 CDS rpsP NC_008209.1 1266354 1266722 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1266354..1266722) Roseobacter denitrificans OCh 114 4197404 YP_681642.1 CDS RD1_1312 NC_008209.1 1266763 1267059 R catalyzes the interconversion of chorismate to prephenate; chorismate mutase complement(1266763..1267059) Roseobacter denitrificans OCh 114 4197405 YP_681643.1 CDS RD1_1313 NC_008209.1 1267153 1267758 R acetyltransferase complement(1267153..1267758) Roseobacter denitrificans OCh 114 4197367 YP_681644.1 CDS RD1_1314 NC_008209.1 1267755 1268267 R acetyltransferase complement(1267755..1268267) Roseobacter denitrificans OCh 114 4197368 YP_681645.1 CDS RD1_1315 NC_008209.1 1268291 1269808 R signal recognition particle protein complement(1268291..1269808) Roseobacter denitrificans OCh 114 4197369 YP_681646.1 CDS RD1_1316 NC_008209.1 1270022 1270603 R hypothetical protein complement(1270022..1270603) Roseobacter denitrificans OCh 114 4197370 YP_681647.1 CDS RD1_1317 NC_008209.1 1270780 1271658 D LysR family transcriptional regulator 1270780..1271658 Roseobacter denitrificans OCh 114 4197371 YP_681648.1 CDS RD1_1318 NC_008209.1 1271655 1272551 D hypothetical protein 1271655..1272551 Roseobacter denitrificans OCh 114 4197372 YP_681649.1 CDS RD1_1319 NC_008209.1 1272642 1273214 R ArsR family transcriptional regulator complement(1272642..1273214) Roseobacter denitrificans OCh 114 4197373 YP_681650.1 CDS atpI NC_008209.1 1273222 1273554 D ATP synthase F0 subunit I 1273222..1273554 Roseobacter denitrificans OCh 114 4197374 YP_681651.1 CDS atpB NC_008209.1 1273556 1274302 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 1273556..1274302 Roseobacter denitrificans OCh 114 4197375 YP_681652.1 CDS atpE NC_008209.1 1274358 1274582 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 1274358..1274582 Roseobacter denitrificans OCh 114 4197376 YP_681653.1 CDS atpX NC_008209.1 1274665 1275195 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B' is part of the membrane proton channel.; ATP synthase F0F1 subunit B' 1274665..1275195 Roseobacter denitrificans OCh 114 4197377 YP_681654.1 CDS atpF NC_008209.1 1275201 1275767 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 1275201..1275767 Roseobacter denitrificans OCh 114 4197378 YP_681655.1 CDS pdhR NC_008209.1 1275919 1276704 R pyruvate dehydrogenase complex repressor complement(1275919..1276704) Roseobacter denitrificans OCh 114 4197379 YP_681656.1 CDS smc NC_008209.1 1276870 1280379 D chromosome segregation protein 1276870..1280379 Roseobacter denitrificans OCh 114 4197380 YP_681657.1 CDS RD1_1328 NC_008209.1 1280412 1280795 D hypothetical protein 1280412..1280795 Roseobacter denitrificans OCh 114 4197381 YP_681658.1 CDS RD1_1329 NC_008209.1 1280904 1282076 R lytic murein transglycosylase complement(1280904..1282076) Roseobacter denitrificans OCh 114 4197382 YP_681659.1 CDS cobD NC_008209.1 1282095 1283003 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(1282095..1283003) Roseobacter denitrificans OCh 114 4197383 YP_681660.1 CDS cobC NC_008209.1 1283000 1283953 R threonine-phosphate decarboxylase complement(1283000..1283953) Roseobacter denitrificans OCh 114 4197384 YP_681661.1 CDS osp NC_008209.1 1284150 1284536 D response regulator 1284150..1284536 Roseobacter denitrificans OCh 114 4197385 YP_681662.1 CDS RD1_1334 NC_008209.1 1284615 1285589 R hypothetical protein complement(1284615..1285589) Roseobacter denitrificans OCh 114 4197386 YP_681663.1 CDS RD1_1335 NC_008209.1 1285768 1286118 D hypothetical protein 1285768..1286118 Roseobacter denitrificans OCh 114 4197348 YP_681664.1 CDS RD1_1336 NC_008209.1 1286122 1287294 R aminotransferase complement(1286122..1287294) Roseobacter denitrificans OCh 114 4197349 YP_681665.1 CDS def NC_008209.1 1287389 1287916 D peptide deformylase 1287389..1287916 Roseobacter denitrificans OCh 114 4197350 YP_681666.1 CDS def NC_008209.1 1287913 1288410 D peptide deformylase 1287913..1288410 Roseobacter denitrificans OCh 114 4197351 YP_681667.1 CDS fmt NC_008209.1 1288429 1289346 D methionyl-tRNA formyltransferase 1288429..1289346 Roseobacter denitrificans OCh 114 4197352 YP_681668.1 CDS RD1_1340 NC_008209.1 1289346 1289582 D hypothetical protein 1289346..1289582 Roseobacter denitrificans OCh 114 4197353 YP_681669.1 CDS acrD NC_008209.1 1289583 1292747 R acriflavin resistance protein D complement(1289583..1292747) Roseobacter denitrificans OCh 114 4197354 YP_681670.1 CDS RD1_1342 NC_008209.1 1292751 1293878 R RND family efflux transporter MFP subunit complement(1292751..1293878) Roseobacter denitrificans OCh 114 4197355 YP_681671.1 CDS RD1_1343 NC_008209.1 1293980 1294672 R TetR family transcriptional regulator complement(1293980..1294672) Roseobacter denitrificans OCh 114 4197356 YP_681672.1 CDS RD1_1344 NC_008209.1 1294679 1296220 R trimethylamine methyltransferase complement(1294679..1296220) Roseobacter denitrificans OCh 114 4197357 YP_681673.1 CDS RD1_1345 NC_008209.1 1296217 1298619 R dimethylglycine dehydrogenase complement(1296217..1298619) Roseobacter denitrificans OCh 114 4197358 YP_681674.1 CDS RD1_1346 NC_008209.1 1298794 1299297 D aggregation factor core 1298794..1299297 Roseobacter denitrificans OCh 114 4197359 YP_681675.1 CDS RD1_1347 NC_008209.1 1299336 1300454 R lipase complement(1299336..1300454) Roseobacter denitrificans OCh 114 4197360 YP_681676.1 CDS RD1_1348 NC_008209.1 1300610 1301293 R fumarylacetoacetate hydrolase complement(1300610..1301293) Roseobacter denitrificans OCh 114 4197361 YP_681677.1 CDS RD1_1349 NC_008209.1 1301343 1301981 R hypothetical protein complement(1301343..1301981) Roseobacter denitrificans OCh 114 4197362 YP_681678.1 CDS RD1_1350 NC_008209.1 1302010 1302627 R hypothetical protein complement(1302010..1302627) Roseobacter denitrificans OCh 114 4197363 YP_681679.1 CDS rnhA NC_008209.1 1302630 1303082 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1302630..1303082) Roseobacter denitrificans OCh 114 4197364 YP_681680.1 CDS RD1_1352 NC_008209.1 1303075 1303668 R hypothetical protein complement(1303075..1303668) Roseobacter denitrificans OCh 114 4197365 YP_681681.1 CDS RD1_1353 NC_008209.1 1303665 1304129 R hypothetical protein complement(1303665..1304129) Roseobacter denitrificans OCh 114 4197366 YP_681682.1 CDS RD1_1354 NC_008209.1 1304164 1305009 R hypothetical protein complement(1304164..1305009) Roseobacter denitrificans OCh 114 4197328 YP_681683.1 CDS ispH NC_008209.1 1304987 1305937 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1304987..1305937) Roseobacter denitrificans OCh 114 4197329 YP_681684.1 CDS RD1_1356 NC_008209.1 1306039 1306587 R hypothetical protein complement(1306039..1306587) Roseobacter denitrificans OCh 114 4197330 YP_681685.1 CDS folK NC_008209.1 1306678 1307292 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1306678..1307292 Roseobacter denitrificans OCh 114 4197331 YP_681686.1 CDS rpoZ NC_008209.1 1307369 1307722 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1307369..1307722 Roseobacter denitrificans OCh 114 4197332 YP_681687.1 CDS spoT NC_008209.1 1307760 1309916 D guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 1307760..1309916 Roseobacter denitrificans OCh 114 4197333 YP_681688.1 CDS RD1_1360 NC_008209.1 1310003 1310677 D hypothetical protein 1310003..1310677 Roseobacter denitrificans OCh 114 4197334 YP_681689.1 CDS pdxJ NC_008209.1 1310708 1311457 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1310708..1311457 Roseobacter denitrificans OCh 114 4197335 YP_681690.1 CDS rhtC NC_008209.1 1311454 1312080 D threonine efflux protein 1311454..1312080 Roseobacter denitrificans OCh 114 4197336 YP_681691.1 CDS acpS NC_008209.1 1312077 1312481 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1312077..1312481 Roseobacter denitrificans OCh 114 4197337 YP_681692.1 CDS lepB NC_008209.1 1312523 1313515 D signal peptidase I 1312523..1313515 Roseobacter denitrificans OCh 114 4197338 YP_681693.1 CDS rnc NC_008209.1 1313512 1314198 D ribonuclease III 1313512..1314198 Roseobacter denitrificans OCh 114 4197339 YP_681694.1 CDS era NC_008209.1 1314195 1315103 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1314195..1315103 Roseobacter denitrificans OCh 114 4197340 YP_681695.1 CDS RD1_1368 NC_008209.1 1315149 1315478 D hypothetical protein 1315149..1315478 Roseobacter denitrificans OCh 114 4197341 YP_681696.1 CDS recO NC_008209.1 1315478 1316203 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1315478..1316203 Roseobacter denitrificans OCh 114 4197342 YP_681697.1 CDS RD1_1370 NC_008209.1 1316187 1316582 R hypothetical protein complement(1316187..1316582) Roseobacter denitrificans OCh 114 4197343 YP_681698.1 CDS RD1_1371 NC_008209.1 1316579 1317100 R transcriptional regulatory protein complement(1316579..1317100) Roseobacter denitrificans OCh 114 4197344 YP_681699.1 CDS ibd2 NC_008209.1 1317271 1318956 R isobutyryl-CoA dehydrogenase complement(1317271..1318956) Roseobacter denitrificans OCh 114 4197345 YP_681700.1 CDS RD1_1373 NC_008209.1 1319209 1319568 R HTH-type transcriptional regulator complement(1319209..1319568) Roseobacter denitrificans OCh 114 4197346 YP_681701.1 CDS RD1_1374 NC_008209.1 1319700 1320623 D transcriptional regulator 1319700..1320623 Roseobacter denitrificans OCh 114 4197347 YP_681702.1 CDS RD1_1375 NC_008209.1 1320715 1321431 D hypothetical protein 1320715..1321431 Roseobacter denitrificans OCh 114 4197309 YP_681703.1 CDS pckA NC_008209.1 1321479 1323077 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(1321479..1323077) Roseobacter denitrificans OCh 114 4197310 YP_681704.1 CDS chvI NC_008209.1 1323431 1324132 D DNA-binding response regulator ChvI 1323431..1324132 Roseobacter denitrificans OCh 114 4197311 YP_681705.1 CDS chvG NC_008209.1 1324176 1325864 D sensor histidine kinase ChvG 1324176..1325864 Roseobacter denitrificans OCh 114 4197312 YP_681706.1 CDS hprK NC_008209.1 1325898 1326314 D HPr kinase/phosphorylase 1325898..1326314 Roseobacter denitrificans OCh 114 4197313 YP_681707.1 CDS RD1_1380 NC_008209.1 1326307 1327194 D hypothetical protein 1326307..1327194 Roseobacter denitrificans OCh 114 4197314 YP_681708.1 CDS RD1_1382 NC_008209.1 1327198 1327590 D PTS system transporter subunit IIA 1327198..1327590 Roseobacter denitrificans OCh 114 4197315 YP_681709.1 CDS ptsH NC_008209.1 1327607 1327876 D phosphocarrier protein Hpr 1327607..1327876 Roseobacter denitrificans OCh 114 4197316 YP_681710.1 CDS RD1_1384 NC_008209.1 1327917 1328795 D hypothetical protein 1327917..1328795 Roseobacter denitrificans OCh 114 4197317 YP_681711.1 CDS bhbD NC_008209.1 1328799 1329674 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(1328799..1329674) Roseobacter denitrificans OCh 114 4197318 YP_681712.1 CDS RD1_1386 NC_008209.1 1329828 1330664 D hypothetical protein 1329828..1330664 Roseobacter denitrificans OCh 114 4197319 YP_681713.1 CDS etfA NC_008209.1 1330718 1331647 R electron transfer flavoprotein subunit alpha complement(1330718..1331647) Roseobacter denitrificans OCh 114 4197320 YP_681714.1 CDS etfB NC_008209.1 1331647 1332405 R electron transfer flavoprotein subunit beta complement(1331647..1332405) Roseobacter denitrificans OCh 114 4197321 YP_681715.1 CDS RD1_1389 NC_008209.1 1332585 1333157 R cob(I)alamin adenosyltransferase complement(1332585..1333157) Roseobacter denitrificans OCh 114 4197322 YP_681716.1 CDS RD1_1390 NC_008209.1 1333164 1333418 R hypothetical protein complement(1333164..1333418) Roseobacter denitrificans OCh 114 4197323 YP_681717.1 CDS RD1_1391 NC_008209.1 1333450 1334277 R oxidoreductase complement(1333450..1334277) Roseobacter denitrificans OCh 114 4197324 YP_681718.1 CDS RD1_1392 NC_008209.1 1334334 1334990 R hypothetical protein complement(1334334..1334990) Roseobacter denitrificans OCh 114 4197325 YP_681719.1 CDS parC NC_008209.1 1335179 1337476 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1335179..1337476 Roseobacter denitrificans OCh 114 4197326 YP_681720.1 CDS cyp NC_008209.1 1337473 1338843 R cytochrome P450 complement(1337473..1338843) Roseobacter denitrificans OCh 114 4197327 YP_681721.1 CDS RD1_1395 NC_008209.1 1338967 1339596 D hypothetical protein 1338967..1339596 Roseobacter denitrificans OCh 114 4197289 YP_681722.1 CDS tufA NC_008209.1 1339709 1340884 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1339709..1340884 Roseobacter denitrificans OCh 114 4197290 YP_681723.1 CDS RD1_1397 NC_008209.1 1341233 1341844 R protease complement(1341233..1341844) Roseobacter denitrificans OCh 114 4197291 YP_681724.1 CDS rpsJ NC_008209.1 1342209 1342526 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1342209..1342526 Roseobacter denitrificans OCh 114 4197292 YP_681725.1 CDS rplC NC_008209.1 1342547 1343407 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1342547..1343407 Roseobacter denitrificans OCh 114 4197293 YP_681726.1 CDS rplD NC_008209.1 1343404 1344021 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1343404..1344021 Roseobacter denitrificans OCh 114 4197294 YP_681727.1 CDS rplW NC_008209.1 1344018 1344314 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1344018..1344314 Roseobacter denitrificans OCh 114 4197295 YP_681728.1 CDS RD1_1402 NC_008209.1 1344584 1344790 D cold shock protein CspA-related protein 1344584..1344790 Roseobacter denitrificans OCh 114 4197296 YP_681729.1 CDS RD1_1403 NC_008209.1 1344977 1345894 D hypothetical protein 1344977..1345894 Roseobacter denitrificans OCh 114 4197297 YP_681730.1 CDS RD1_1404 NC_008209.1 1346193 1346594 R hypothetical protein complement(1346193..1346594) Roseobacter denitrificans OCh 114 4197298 YP_681731.1 CDS rplB NC_008209.1 1346890 1347732 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1346890..1347732 Roseobacter denitrificans OCh 114 4197299 YP_681732.1 CDS rpsS NC_008209.1 1347736 1348014 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1347736..1348014 Roseobacter denitrificans OCh 114 4197300 YP_681733.1 CDS rplV NC_008209.1 1348011 1348391 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1348011..1348391 Roseobacter denitrificans OCh 114 4197301 YP_681734.1 CDS rpsC NC_008209.1 1348391 1349098 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1348391..1349098 Roseobacter denitrificans OCh 114 4197302 YP_681735.1 CDS rplP NC_008209.1 1349112 1349525 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1349112..1349525 Roseobacter denitrificans OCh 114 4197303 YP_681736.1 CDS RD1_1410 NC_008209.1 1349850 1350323 D hypothetical protein 1349850..1350323 Roseobacter denitrificans OCh 114 4197304 YP_681737.1 CDS RD1_1411 NC_008209.1 1349862 1350311 R hypothetical protein complement(1349862..1350311) Roseobacter denitrificans OCh 114 4197305 YP_681738.1 CDS RD1_1412 NC_008209.1 1350463 1351080 R hypothetical protein complement(1350463..1351080) Roseobacter denitrificans OCh 114 4197306 YP_681739.1 CDS RD1_1414 NC_008209.1 1351377 1351943 D hypothetical protein 1351377..1351943 Roseobacter denitrificans OCh 114 4197307 YP_681740.1 CDS arcB NC_008209.1 1352425 1353477 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1352425..1353477) Roseobacter denitrificans OCh 114 4197308 YP_681741.1 CDS arcA NC_008209.1 1353486 1354412 R arginase complement(1353486..1354412) Roseobacter denitrificans OCh 114 4197270 YP_681742.1 CDS RD1_1417 NC_008209.1 1354603 1355241 R threonine efflux protein complement(1354603..1355241) Roseobacter denitrificans OCh 114 4197271 YP_681743.1 CDS RD1_1418 NC_008209.1 1355537 1355743 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1355537..1355743 Roseobacter denitrificans OCh 114 4197272 YP_681744.1 CDS rpsQ NC_008209.1 1355755 1355994 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1355755..1355994 Roseobacter denitrificans OCh 114 4197273 YP_681745.1 CDS rplN NC_008209.1 1356064 1356432 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1356064..1356432 Roseobacter denitrificans OCh 114 4197274 YP_681746.1 CDS rplX NC_008209.1 1356435 1356746 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1356435..1356746 Roseobacter denitrificans OCh 114 4197275 YP_681747.1 CDS rplE NC_008209.1 1356739 1357302 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1356739..1357302 Roseobacter denitrificans OCh 114 4197276 YP_681748.1 CDS rpsN NC_008209.1 1357323 1357628 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1357323..1357628 Roseobacter denitrificans OCh 114 4197277 YP_681749.1 CDS rpsH NC_008209.1 1357641 1358033 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1357641..1358033 Roseobacter denitrificans OCh 114 4197278 YP_681750.1 CDS rplF NC_008209.1 1358044 1358577 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1358044..1358577 Roseobacter denitrificans OCh 114 4197279 YP_681751.1 CDS rplR NC_008209.1 1358589 1358948 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1358589..1358948 Roseobacter denitrificans OCh 114 4197280 YP_681752.1 CDS rpsE NC_008209.1 1359055 1359630 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1359055..1359630 Roseobacter denitrificans OCh 114 4197281 YP_681753.1 CDS rpmD NC_008209.1 1359643 1359831 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1359643..1359831 Roseobacter denitrificans OCh 114 4197282 YP_681754.1 CDS RD1_1430 NC_008209.1 1359968 1360243 D hypothetical protein 1359968..1360243 Roseobacter denitrificans OCh 114 4197283 YP_681755.1 CDS rplO NC_008209.1 1361396 1361878 D late assembly protein; 50S ribosomal protein L15 1361396..1361878 Roseobacter denitrificans OCh 114 4197284 YP_681756.1 CDS secY NC_008209.1 1361998 1363362 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1361998..1363362 Roseobacter denitrificans OCh 114 4197285 YP_681757.1 CDS adk NC_008209.1 1363359 1364006 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1363359..1364006 Roseobacter denitrificans OCh 114 4197286 YP_681758.1 CDS RD1_1434 NC_008209.1 1364033 1365229 R hypothetical protein complement(1364033..1365229) Roseobacter denitrificans OCh 114 4197287 YP_681759.1 CDS rpsM NC_008209.1 1365537 1365905 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1365537..1365905 Roseobacter denitrificans OCh 114 4197288 YP_681760.1 CDS rpsK NC_008209.1 1365921 1366310 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1365921..1366310 Roseobacter denitrificans OCh 114 4197250 YP_681761.1 CDS rpoA NC_008209.1 1366413 1367441 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1366413..1367441 Roseobacter denitrificans OCh 114 4197251 YP_681762.1 CDS rplQ NC_008209.1 1367571 1367993 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1367571..1367993 Roseobacter denitrificans OCh 114 4197252 YP_681763.1 CDS RD1_1439 NC_008209.1 1368216 1369541 D recombination factor protein RarA 1368216..1369541 Roseobacter denitrificans OCh 114 4197253 YP_681764.1 CDS crcB NC_008209.1 1369608 1369991 D CrcB-like protein 1369608..1369991 Roseobacter denitrificans OCh 114 4197254 YP_681765.1 CDS rluC NC_008209.1 1369988 1371028 D ribosomal large subunit pseudouridine synthase C 1369988..1371028 Roseobacter denitrificans OCh 114 4197255 YP_681766.1 CDS RD1_1442 NC_008209.1 1371028 1371705 D hydrolase 1371028..1371705 Roseobacter denitrificans OCh 114 4197256 YP_681767.1 CDS RD1_1443 NC_008209.1 1371709 1372419 D ATP12 chaperone protein 1371709..1372419 Roseobacter denitrificans OCh 114 4197257 YP_681768.1 CDS bztA NC_008209.1 1372618 1373634 D glutamate/glutamine/aspartate/asparagine-binding protein 1372618..1373634 Roseobacter denitrificans OCh 114 4197258 YP_681769.1 CDS bztB NC_008209.1 1373768 1374982 D glutamate/glutamine/aspartate/asparagine transport system permease 1373768..1374982 Roseobacter denitrificans OCh 114 4197259 YP_681770.1 CDS RD1_1446 NC_008209.1 1374986 1376284 D amino acid ABC transporter permease 1374986..1376284 Roseobacter denitrificans OCh 114 4197260 YP_681771.1 CDS RD1_1447 NC_008209.1 1376723 1376905 R hypothetical protein complement(1376723..1376905) Roseobacter denitrificans OCh 114 4197261 YP_681772.1 CDS RD1_1448 NC_008209.1 1377122 1377619 R phosphoglycerate mutase complement(1377122..1377619) Roseobacter denitrificans OCh 114 4197262 YP_681773.1 CDS RD1_1449 NC_008209.1 1377623 1378273 R hypothetical protein complement(1377623..1378273) Roseobacter denitrificans OCh 114 4197263 YP_681774.1 CDS RD1_1450 NC_008209.1 1378270 1379064 R sterol desaturase complement(1378270..1379064) Roseobacter denitrificans OCh 114 4197264 YP_681775.1 CDS argB NC_008209.1 1379155 1380018 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1379155..1380018) Roseobacter denitrificans OCh 114 4197265 YP_681776.1 CDS engB NC_008209.1 1380048 1380698 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1380048..1380698) Roseobacter denitrificans OCh 114 4197266 YP_681777.1 CDS RD1_1454 NC_008209.1 1380698 1381438 R MOSC domain-containing protein complement(1380698..1381438) Roseobacter denitrificans OCh 114 4197267 YP_681778.1 CDS oxaA NC_008209.1 1381435 1383255 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(1381435..1383255) Roseobacter denitrificans OCh 114 4197268 YP_681779.1 CDS RD1_1456 NC_008209.1 1383427 1384974 R EAL domain-containing protein complement(1383427..1384974) Roseobacter denitrificans OCh 114 4197269 YP_681780.1 CDS RD1_1457 NC_008209.1 1385094 1386023 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(1385094..1386023) Roseobacter denitrificans OCh 114 4197232 YP_681781.1 CDS RD1_1458 NC_008209.1 1386035 1386271 R hypothetical protein complement(1386035..1386271) Roseobacter denitrificans OCh 114 4197233 YP_681782.1 CDS rnpA NC_008209.1 1386268 1386681 R ribonuclease P protein component complement(1386268..1386681) Roseobacter denitrificans OCh 114 4197234 YP_681783.1 CDS rpmH NC_008209.1 1386706 1386840 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1386706..1386840) Roseobacter denitrificans OCh 114 4197235 YP_681784.1 CDS merA NC_008209.1 1387141 1387872 D mercuric reductase 1387141..1387872 Roseobacter denitrificans OCh 114 4197236 YP_681785.1 CDS merA NC_008209.1 1387814 1389292 D mercuric reductase 1387814..1389292 Roseobacter denitrificans OCh 114 4197237 YP_681786.1 CDS regM NC_008209.1 1389304 1390710 D sensor histidine kinase 1389304..1390710 Roseobacter denitrificans OCh 114 4197238 YP_681787.1 CDS RD1_1467 NC_008209.1 1391051 1391494 D hypothetical protein 1391051..1391494 Roseobacter denitrificans OCh 114 4197240 YP_681788.1 CDS RD1_1468 NC_008209.1 1393010 1393297 D hypothetical protein 1393010..1393297 Roseobacter denitrificans OCh 114 4197241 YP_681789.1 CDS RD1_1469 NC_008209.1 1394709 1394822 R hypothetical protein complement(1394709..1394822) Roseobacter denitrificans OCh 114 4197242 YP_681790.1 CDS RD1_1470 NC_008209.1 1394986 1395165 D hypothetical protein 1394986..1395165 Roseobacter denitrificans OCh 114 4197243 YP_681791.1 CDS RD1_1471 NC_008209.1 1395405 1396580 D SCP-like extracellular protein 1395405..1396580 Roseobacter denitrificans OCh 114 4197244 YP_681792.1 CDS gatM NC_008209.1 1396815 1397939 D glycine amidinotransferase 1396815..1397939 Roseobacter denitrificans OCh 114 4197245 YP_681793.1 CDS RD1_1474 NC_008209.1 1398117 1399634 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(1398117..1399634) Roseobacter denitrificans OCh 114 4197246 YP_681794.1 CDS mcd NC_008209.1 1399637 1400881 R malonyl-CoA decarboxylase complement(1399637..1400881) Roseobacter denitrificans OCh 114 4197247 YP_681795.1 CDS RD1_1476 NC_008209.1 1400878 1402194 R TRAP dicarboxylate transporter subunit DctM complement(1400878..1402194) Roseobacter denitrificans OCh 114 4197248 YP_681796.1 CDS RD1_1477 NC_008209.1 1402194 1402796 R hypothetical protein complement(1402194..1402796) Roseobacter denitrificans OCh 114 4197249 YP_681797.1 CDS RD1_1478 NC_008209.1 1402819 1403808 R C4-dicarboxylate transport system C4-dicarboxylate-binding protein complement(1402819..1403808) Roseobacter denitrificans OCh 114 4197212 YP_681798.1 CDS RD1_1479 NC_008209.1 1403947 1404594 D GntR family transcriptional regulator 1403947..1404594 Roseobacter denitrificans OCh 114 4197213 YP_681799.1 CDS RD1_1480 NC_008209.1 1404822 1405070 R hypothetical protein complement(1404822..1405070) Roseobacter denitrificans OCh 114 4197214 YP_681800.1 CDS mtlK NC_008209.1 1405379 1406860 R mannitol 2-dehydrogenase complement(1405379..1406860) Roseobacter denitrificans OCh 114 4197215 YP_681801.1 CDS RD1_1482 NC_008209.1 1406848 1407009 R hypothetical protein complement(1406848..1407009) Roseobacter denitrificans OCh 114 4197216 YP_681802.1 CDS RD1_1483 NC_008209.1 1407043 1408047 R sugar transport ATP-binding transport protein complement(1407043..1408047) Roseobacter denitrificans OCh 114 4197217 YP_681803.1 CDS RD1_1484 NC_008209.1 1408060 1408890 R sugar ABC transporter permease complement(1408060..1408890) Roseobacter denitrificans OCh 114 4197218 YP_681804.1 CDS RD1_1485 NC_008209.1 1408901 1409767 R sugar ABC transporter permease complement(1408901..1409767) Roseobacter denitrificans OCh 114 4197219 YP_681805.1 CDS RD1_1486 NC_008209.1 1409887 1411194 R sorbitol ABC transporter substrate-binding protein complement(1409887..1411194) Roseobacter denitrificans OCh 114 4197220 YP_681806.1 CDS RD1_1487 NC_008209.1 1411309 1412340 R LacI family transcriptional regulator complement(1411309..1412340) Roseobacter denitrificans OCh 114 4197221 YP_681807.1 CDS RD1_1488 NC_008209.1 1412798 1413538 R histidine kinase complement(1412798..1413538) Roseobacter denitrificans OCh 114 4197222 YP_681808.1 CDS RD1_1489 NC_008209.1 1413615 1415087 R trehalose/maltose binding complement(1413615..1415087) Roseobacter denitrificans OCh 114 4197223 YP_681809.1 CDS RD1_1490 NC_008209.1 1415207 1417150 D hypothetical protein 1415207..1417150 Roseobacter denitrificans OCh 114 4197224 YP_681810.1 CDS RD1_1491 NC_008209.1 1417172 1417633 D response regulator 1417172..1417633 Roseobacter denitrificans OCh 114 4197225 YP_681811.1 CDS RD1_1492 NC_008209.1 1417733 1417831 D hypothetical protein 1417733..1417831 Roseobacter denitrificans OCh 114 4197226 YP_681812.1 CDS RD1_1493 NC_008209.1 1417874 1419202 D UDP-glucose/GDP-mannose dehydrogenase 1417874..1419202 Roseobacter denitrificans OCh 114 4197227 YP_681813.1 CDS fmdA NC_008209.1 1419258 1420196 R formamidase complement(1419258..1420196) Roseobacter denitrificans OCh 114 4197228 YP_681814.1 CDS RD1_1495 NC_008209.1 1420300 1421949 R tryptophan monooxygenase complement(1420300..1421949) Roseobacter denitrificans OCh 114 4197229 YP_681815.1 CDS RD1_1496 NC_008209.1 1421946 1422731 R hydrolase complement(1421946..1422731) Roseobacter denitrificans OCh 114 4197230 YP_681816.1 CDS RD1_1497 NC_008209.1 1422741 1424048 R glutamine synthetase complement(1422741..1424048) Roseobacter denitrificans OCh 114 4197231 YP_681817.1 CDS RD1_1498 NC_008209.1 1424045 1424902 R RpiR family transcriptional regulator complement(1424045..1424902) Roseobacter denitrificans OCh 114 4197193 YP_681818.1 CDS RD1_1499 NC_008209.1 1425015 1425824 D hypothetical protein 1425015..1425824 Roseobacter denitrificans OCh 114 4197194 YP_681819.1 CDS RD1_1500 NC_008209.1 1425821 1426462 D hypothetical protein 1425821..1426462 Roseobacter denitrificans OCh 114 4197195 YP_681820.1 CDS RD1_1501 NC_008209.1 1426506 1427216 D branched-chain amino acid ABC transporter ATP-binding protein 1426506..1427216 Roseobacter denitrificans OCh 114 4197196 YP_681821.1 CDS RD1_1502 NC_008209.1 1427247 1428398 D branched-chain amino acid ABC transporter substrate-binding protein 1427247..1428398 Roseobacter denitrificans OCh 114 4197197 YP_681822.1 CDS RD1_1503 NC_008209.1 1428443 1429147 D branched-chain amino acid ABC transporter ATP-binding protein 1428443..1429147 Roseobacter denitrificans OCh 114 4197198 YP_681823.1 CDS RD1_1504 NC_008209.1 1429149 1430045 D branched-chain amino acid ABC transporter permease 1429149..1430045 Roseobacter denitrificans OCh 114 4197199 YP_681824.1 CDS RD1_1505 NC_008209.1 1430042 1431067 D branched-chain amino acid ABC transporter permease 1430042..1431067 Roseobacter denitrificans OCh 114 4197200 YP_681825.1 CDS RD1_1506 NC_008209.1 1431256 1432311 R hypothetical protein complement(1431256..1432311) Roseobacter denitrificans OCh 114 4197201 YP_681826.1 CDS RD1_1507 NC_008209.1 1432345 1432761 R ArsR family transcriptional regulator complement(1432345..1432761) Roseobacter denitrificans OCh 114 4197202 YP_681827.1 CDS soxS NC_008209.1 1432789 1433157 R SoxS protein complement(1432789..1433157) Roseobacter denitrificans OCh 114 4197203 YP_681828.1 CDS ccdA NC_008209.1 1433231 1433968 D cytochrome c biogenesis protein 1433231..1433968 Roseobacter denitrificans OCh 114 4197204 YP_681829.1 CDS soxW NC_008209.1 1433984 1434547 D thioredoxin SoxW 1433984..1434547 Roseobacter denitrificans OCh 114 4197205 YP_681830.1 CDS soxX NC_008209.1 1434667 1435140 D monoheme cytochrome c SoxX 1434667..1435140 Roseobacter denitrificans OCh 114 4197206 YP_681831.1 CDS soxY NC_008209.1 1435189 1435605 D with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY 1435189..1435605 Roseobacter denitrificans OCh 114 4197207 YP_681832.1 CDS soxZ NC_008209.1 1435626 1435958 D sulfur oxidation Z protein 1435626..1435958 Roseobacter denitrificans OCh 114 4197208 YP_681833.1 CDS soxA NC_008209.1 1435984 1436829 D diheme cytochrome c SoxA 1435984..1436829 Roseobacter denitrificans OCh 114 4197209 YP_681834.1 CDS soxB NC_008209.1 1436927 1438630 D sulfur oxidation B protein 1436927..1438630 Roseobacter denitrificans OCh 114 4197210 YP_681835.1 CDS soxC NC_008209.1 1438660 1439946 D sulfite dehydrogenase SoxC protein 1438660..1439946 Roseobacter denitrificans OCh 114 4197211 YP_681836.1 CDS soxD NC_008209.1 1439930 1440967 D diheme cytochrome c SoxD 1439930..1440967 Roseobacter denitrificans OCh 114 4197173 YP_681837.1 CDS soxE NC_008209.1 1440972 1441676 D cytochrome c2 1440972..1441676 Roseobacter denitrificans OCh 114 4197174 YP_681838.1 CDS soxF NC_008209.1 1441705 1442973 D sulfide dehydrogenase flavoprotein subunit 1441705..1442973 Roseobacter denitrificans OCh 114 4197175 YP_681839.1 CDS RD1_1520 NC_008209.1 1443054 1443494 D hypothetical protein 1443054..1443494 Roseobacter denitrificans OCh 114 4197176 YP_681840.1 CDS RD1_1521 NC_008209.1 1443604 1444671 D hypothetical protein 1443604..1444671 Roseobacter denitrificans OCh 114 4197177 YP_681841.1 CDS RD1_1522 NC_008209.1 1444780 1445724 R metallo-beta-lactamase family protein complement(1444780..1445724) Roseobacter denitrificans OCh 114 4197178 YP_681842.1 CDS RD1_1523 NC_008209.1 1445727 1446644 R metallo-beta-lactamase family protein complement(1445727..1446644) Roseobacter denitrificans OCh 114 4197179 YP_681843.1 CDS RD1_1524 NC_008209.1 1446704 1446868 R hypothetical protein complement(1446704..1446868) Roseobacter denitrificans OCh 114 4197180 YP_681844.1 CDS RD1_1525 NC_008209.1 1446993 1447982 D hypothetical protein 1446993..1447982 Roseobacter denitrificans OCh 114 4197181 YP_681845.1 CDS RD1_1526 NC_008209.1 1448025 1449989 D hypothetical protein 1448025..1449989 Roseobacter denitrificans OCh 114 4197182 YP_681846.1 CDS nadC NC_008209.1 1450054 1450869 D nicotinate-nucleotide pyrophosphorylase 1450054..1450869 Roseobacter denitrificans OCh 114 4197183 YP_681847.1 CDS RD1_1528 NC_008209.1 1450893 1452926 D nucleoside phosphorylase 1450893..1452926 Roseobacter denitrificans OCh 114 4197184 YP_681848.1 CDS RD1_1529 NC_008209.1 1453044 1454225 R amidohydrolase complement(1453044..1454225) Roseobacter denitrificans OCh 114 4197185 YP_681849.1 CDS marR NC_008209.1 1454312 1454779 D multiple antibiotic resistance protein MarR 1454312..1454779 Roseobacter denitrificans OCh 114 4197186 YP_681850.1 CDS RD1_1532 NC_008209.1 1454922 1455764 D dehydrogenase 1454922..1455764 Roseobacter denitrificans OCh 114 4197187 YP_681851.1 CDS mop NC_008209.1 1455765 1458506 D aldehyde oxidoreductase 1455765..1458506 Roseobacter denitrificans OCh 114 4197188 YP_681852.1 CDS RD1_1534 NC_008209.1 1458499 1459989 D hypothetical protein 1458499..1459989 Roseobacter denitrificans OCh 114 4197189 YP_681853.1 CDS RD1_1535 NC_008209.1 1459994 1460878 D hypothetical protein 1459994..1460878 Roseobacter denitrificans OCh 114 4197190 YP_681854.1 CDS RD1_1536 NC_008209.1 1460865 1461446 D hypothetical protein 1460865..1461446 Roseobacter denitrificans OCh 114 4197191 YP_681855.1 CDS RD1_1537 NC_008209.1 1461443 1462027 D hypothetical protein 1461443..1462027 Roseobacter denitrificans OCh 114 4197192 YP_681856.1 CDS RD1_1539 NC_008209.1 1462487 1463470 D C4-dicarboxylate binding protein 1462487..1463470 Roseobacter denitrificans OCh 114 4197154 YP_681857.1 CDS RD1_1541 NC_008209.1 1463544 1464122 D ABC transporter permease 1463544..1464122 Roseobacter denitrificans OCh 114 4197155 YP_681858.1 CDS RD1_1542 NC_008209.1 1464126 1465388 D TRAP dicarboxylate transporter subunit DctM 1464126..1465388 Roseobacter denitrificans OCh 114 4197156 YP_681859.1 CDS frpC NC_008209.1 1465460 1468876 R iron-regulated protein FrpC complement(1465460..1468876) Roseobacter denitrificans OCh 114 4197157 YP_681860.1 CDS RD1_1545 NC_008209.1 1468996 1469088 D hypothetical protein 1468996..1469088 Roseobacter denitrificans OCh 114 4197158 YP_681861.1 CDS nosR NC_008209.1 1469238 1471397 D nitrous-oxide reductase regulatory protein NosR 1469238..1471397 Roseobacter denitrificans OCh 114 4197159 YP_681862.1 CDS nosZ NC_008209.1 1471416 1473329 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 1471416..1473329 Roseobacter denitrificans OCh 114 4197160 YP_681863.1 CDS nosD NC_008209.1 1473333 1474580 D nitrous oxide maturation protein 1473333..1474580 Roseobacter denitrificans OCh 114 4197161 YP_681864.1 CDS nosF NC_008209.1 1474570 1475472 D copper transport ATP-binding protein NosF 1474570..1475472 Roseobacter denitrificans OCh 114 4197162 YP_681865.1 CDS nosY NC_008209.1 1475469 1476290 D nitrous oxide maturation protein NosY 1475469..1476290 Roseobacter denitrificans OCh 114 4197163 YP_681866.1 CDS nosL NC_008209.1 1476287 1476799 D nitrous oxide reductase accessory protein NosL 1476287..1476799 Roseobacter denitrificans OCh 114 4197164 YP_681867.1 CDS nosX NC_008209.1 1476796 1477698 D nitrous-oxide reductase nosX 1476796..1477698 Roseobacter denitrificans OCh 114 4197165 YP_681868.1 CDS RD1_1553 NC_008209.1 1477772 1478464 R cyclic nucleotide-binding protein complement(1477772..1478464) Roseobacter denitrificans OCh 114 4197166 YP_681869.1 CDS hbaR NC_008209.1 1478704 1479438 D transcriptional activator 1478704..1479438 Roseobacter denitrificans OCh 114 4197167 YP_681870.1 CDS RD1_1556 NC_008209.1 1479401 1479988 D hypothetical protein 1479401..1479988 Roseobacter denitrificans OCh 114 4197168 YP_681871.1 CDS norF NC_008209.1 1480088 1480339 R nitric oxide reductase F protein complement(1480088..1480339) Roseobacter denitrificans OCh 114 4197169 YP_681872.1 CDS norE NC_008209.1 1480336 1480866 R NorE protein complement(1480336..1480866) Roseobacter denitrificans OCh 114 4197170 YP_681873.1 CDS norD NC_008209.1 1480863 1482770 R nitric oxide reductase D protein complement(1480863..1482770) Roseobacter denitrificans OCh 114 4197171 YP_681874.1 CDS norQ NC_008209.1 1482774 1483586 R denitrification regulatory protein nirQ complement(1482774..1483586) Roseobacter denitrificans OCh 114 4197172 YP_681875.1 CDS norB NC_008209.1 1483583 1484953 R nitric-oxide reductase subunit B complement(1483583..1484953) Roseobacter denitrificans OCh 114 4197134 YP_681876.1 CDS norC NC_008209.1 1484963 1485415 R NorC-like protein complement(1484963..1485415) Roseobacter denitrificans OCh 114 4197135 YP_681877.1 CDS cycA NC_008209.1 1485499 1485876 R cytochrome c2 complement(1485499..1485876) Roseobacter denitrificans OCh 114 4197136 YP_681878.1 CDS nosR NC_008209.1 1485900 1487870 R nitrous oxide reductase regulatory protein NosR complement(1485900..1487870) Roseobacter denitrificans OCh 114 4197137 YP_681879.1 CDS nirS NC_008209.1 1488045 1489742 D nitrite reductase 1488045..1489742 Roseobacter denitrificans OCh 114 4197138 YP_681880.1 CDS nirE NC_008209.1 1489854 1490645 D uroporphyrin-III C-methyltransferase 1489854..1490645 Roseobacter denitrificans OCh 114 4197139 YP_681881.1 CDS nirC NC_008209.1 1490638 1490955 D cytochrome c (c55X) 1490638..1490955 Roseobacter denitrificans OCh 114 4197140 YP_681882.1 CDS nirF NC_008209.1 1490955 1492106 D cytochrome cd1 1490955..1492106 Roseobacter denitrificans OCh 114 4197141 YP_681883.1 CDS nirD NC_008209.1 1492117 1493121 D nitrite reductase heme biosynthesis D protein 1492117..1493121 Roseobacter denitrificans OCh 114 4197142 YP_681884.1 CDS nirG NC_008209.1 1493111 1493560 D nitrite reductase heme biosynthesis G 1493111..1493560 Roseobacter denitrificans OCh 114 4197143 YP_681885.1 CDS nirH NC_008209.1 1493557 1494048 D nitrite reductase heme biosynthesis H protein 1493557..1494048 Roseobacter denitrificans OCh 114 4197144 YP_681886.1 CDS nirJ NC_008209.1 1494048 1495262 D nitrite reductase heme biosynthesis J protein 1494048..1495262 Roseobacter denitrificans OCh 114 4197145 YP_681887.1 CDS nirN NC_008209.1 1495237 1496784 D nitrite reductase N 1495237..1496784 Roseobacter denitrificans OCh 114 4197146 YP_681888.1 CDS cbiX NC_008209.1 1496741 1497493 D CbiX protein 1496741..1497493 Roseobacter denitrificans OCh 114 4197147 YP_681889.1 CDS RD1_1575 NC_008209.1 1497490 1497726 D hypothetical protein 1497490..1497726 Roseobacter denitrificans OCh 114 4197148 YP_681890.1 CDS hemA NC_008209.1 1497792 1499006 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1497792..1499006 Roseobacter denitrificans OCh 114 4197149 YP_681891.1 CDS RD1_1577 NC_008209.1 1499281 1500342 D glycosyl transferase family protein 1499281..1500342 Roseobacter denitrificans OCh 114 4197150 YP_681892.1 CDS RD1_1579 NC_008209.1 1500548 1501972 D polysaccharide biosynthesis protein 1500548..1501972 Roseobacter denitrificans OCh 114 4197151 YP_681893.1 CDS RD1_1580 NC_008209.1 1502013 1503008 R glycosyl transferase family protein complement(1502013..1503008) Roseobacter denitrificans OCh 114 4197152 YP_681894.1 CDS RD1_1581 NC_008209.1 1503060 1503164 D hypothetical protein 1503060..1503164 Roseobacter denitrificans OCh 114 4197153 YP_681895.1 CDS alkJ NC_008209.1 1503197 1504837 R alcohol dehydrogenase complement(1503197..1504837) Roseobacter denitrificans OCh 114 4197115 YP_681896.1 CDS RD1_1583 NC_008209.1 1505122 1506108 D TRAP-type transporter 1505122..1506108 Roseobacter denitrificans OCh 114 4197116 YP_681897.1 CDS RD1_1584 NC_008209.1 1506223 1508451 D hypothetical protein 1506223..1508451 Roseobacter denitrificans OCh 114 4197117 YP_681898.1 CDS RD1_1585 NC_008209.1 1509048 1529096 D VBCS repeat-containing protein 1509048..1529096 Roseobacter denitrificans OCh 114 4197118 YP_681899.1 CDS RD1_1586 NC_008209.1 1529274 1530266 R aldo/keto reductase complement(1529274..1530266) Roseobacter denitrificans OCh 114 4197119 YP_681900.1 CDS mexF NC_008209.1 1530411 1533602 R RND multidrug efflux transporter MexF complement(1530411..1533602) Roseobacter denitrificans OCh 114 4197120 YP_681901.1 CDS RD1_1588 NC_008209.1 1533556 1534785 R RND efflux membrane fusion protein complement(1533556..1534785) Roseobacter denitrificans OCh 114 4197121 YP_681902.1 CDS RD1_1589 NC_008209.1 1534871 1536253 R hypothetical protein complement(1534871..1536253) Roseobacter denitrificans OCh 114 4197122 YP_681903.1 CDS tlpA NC_008209.1 1536349 1536927 R thiol:disulfide interchange protein tlpA complement(1536349..1536927) Roseobacter denitrificans OCh 114 4197123 YP_681904.1 CDS argH NC_008209.1 1536952 1538352 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1536952..1538352 Roseobacter denitrificans OCh 114 4197124 YP_681905.1 CDS RD1_1592 NC_008209.1 1538334 1538528 D lipoprotein 1538334..1538528 Roseobacter denitrificans OCh 114 4197125 YP_681906.1 CDS RD1_1593 NC_008209.1 1538534 1538692 D hypothetical protein 1538534..1538692 Roseobacter denitrificans OCh 114 4197126 YP_681907.1 CDS RD1_1594 NC_008209.1 1538694 1539008 D hypothetical protein 1538694..1539008 Roseobacter denitrificans OCh 114 4197127 YP_681908.1 CDS lysA NC_008209.1 1539099 1540364 D diaminopimelate decarboxylase 1539099..1540364 Roseobacter denitrificans OCh 114 4197128 YP_681909.1 CDS RD1_1596 NC_008209.1 1540407 1542998 D hypothetical protein 1540407..1542998 Roseobacter denitrificans OCh 114 4197129 YP_681910.1 CDS RD1_1597 NC_008209.1 1542995 1543111 R hypothetical protein complement(1542995..1543111) Roseobacter denitrificans OCh 114 4197130 YP_681911.1 CDS RD1_1598 NC_008209.1 1543224 1544033 R hypothetical protein complement(1543224..1544033) Roseobacter denitrificans OCh 114 4197131 YP_681912.1 CDS ftsE NC_008209.1 1544199 1544876 D cell division ATP-binding protein 1544199..1544876 Roseobacter denitrificans OCh 114 4197132 YP_681913.1 CDS RD1_1600 NC_008209.1 1544876 1545766 D cell division permease 1544876..1545766 Roseobacter denitrificans OCh 114 4197133 YP_681914.1 CDS RD1_1601 NC_008209.1 1545766 1546497 D acyltransferase 1545766..1546497 Roseobacter denitrificans OCh 114 4197095 YP_681915.1 CDS RD1_1602 NC_008209.1 1546481 1547098 D pyridoxamine 5'-phosphate oxidase family protein 1546481..1547098 Roseobacter denitrificans OCh 114 4197096 YP_681916.1 CDS lpdA NC_008209.1 1547115 1548503 R dihydrolipoamide dehydrogenase complement(1547115..1548503) Roseobacter denitrificans OCh 114 4197097 YP_681917.1 CDS RD1_1604 NC_008209.1 1548516 1548650 D hypothetical protein 1548516..1548650 Roseobacter denitrificans OCh 114 4197098 YP_681918.1 CDS RD1_1605 NC_008209.1 1548658 1549056 R hypothetical protein complement(1548658..1549056) Roseobacter denitrificans OCh 114 4197099 YP_681919.1 CDS RD1_1606 NC_008209.1 1549037 1549306 R hypothetical protein complement(1549037..1549306) Roseobacter denitrificans OCh 114 4197100 YP_681920.1 CDS RD1_1607 NC_008209.1 1549317 1549700 R hypothetical protein complement(1549317..1549700) Roseobacter denitrificans OCh 114 4197101 YP_681921.1 CDS sucB NC_008209.1 1550270 1551766 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1550270..1551766) Roseobacter denitrificans OCh 114 4197102 YP_681922.1 CDS sucA NC_008209.1 1551770 1554730 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(1551770..1554730) Roseobacter denitrificans OCh 114 4197103 YP_681923.1 CDS RD1_1610 NC_008209.1 1554727 1555233 R hypothetical protein complement(1554727..1555233) Roseobacter denitrificans OCh 114 4197104 YP_681924.1 CDS sucD NC_008209.1 1555436 1556323 R succinyl-CoA synthase subunit alpha complement(1555436..1556323) Roseobacter denitrificans OCh 114 4197105 YP_681925.1 CDS RD1_1612 NC_008209.1 1556339 1556851 R hypothetical protein complement(1556339..1556851) Roseobacter denitrificans OCh 114 4197106 YP_681926.1 CDS RD1_1613 NC_008209.1 1556848 1557429 R hypothetical protein complement(1556848..1557429) Roseobacter denitrificans OCh 114 4197107 YP_681927.1 CDS RD1_1614 NC_008209.1 1557558 1557980 R hypothetical protein complement(1557558..1557980) Roseobacter denitrificans OCh 114 4197108 YP_681928.1 CDS sucC NC_008209.1 1557984 1559177 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1557984..1559177) Roseobacter denitrificans OCh 114 4197109 YP_681929.1 CDS RD1_1616 NC_008209.1 1559319 1559609 D hypothetical protein 1559319..1559609 Roseobacter denitrificans OCh 114 4197110 YP_681930.1 CDS mdh NC_008209.1 1559670 1560632 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(1559670..1560632) Roseobacter denitrificans OCh 114 4197111 YP_681931.1 CDS RD1_1618 NC_008209.1 1560780 1561535 D hypothetical protein 1560780..1561535 Roseobacter denitrificans OCh 114 4197112 YP_681932.1 CDS RD1_1619 NC_008209.1 1561607 1561939 R hypothetical protein complement(1561607..1561939) Roseobacter denitrificans OCh 114 4197113 YP_681933.1 CDS citE NC_008209.1 1562307 1563164 D citrate lyase subunit beta 1562307..1563164 Roseobacter denitrificans OCh 114 4197114 YP_681934.1 CDS RD1_1621 NC_008209.1 1563169 1563726 D hypothetical protein 1563169..1563726 Roseobacter denitrificans OCh 114 4197076 YP_681935.1 CDS RD1_1622 NC_008209.1 1563743 1563946 D hypothetical protein 1563743..1563946 Roseobacter denitrificans OCh 114 4197077 YP_681936.1 CDS RD1_1623 NC_008209.1 1563946 1564980 D MaoC family protein 1563946..1564980 Roseobacter denitrificans OCh 114 4197078 YP_681937.1 CDS RD1_1624 NC_008209.1 1565052 1565786 D hypothetical protein 1565052..1565786 Roseobacter denitrificans OCh 114 4197079 YP_681938.1 CDS RD1_1625 NC_008209.1 1565842 1566507 D von Willebrand factor A 1565842..1566507 Roseobacter denitrificans OCh 114 4197080 YP_681939.1 CDS sdhC NC_008209.1 1566662 1567045 D succinate dehydrogenase, cytochrome b556 subunit 1566662..1567045 Roseobacter denitrificans OCh 114 4197081 YP_681940.1 CDS sdhD NC_008209.1 1567056 1567427 D hypothetical protein 1567056..1567427 Roseobacter denitrificans OCh 114 4197082 YP_681941.1 CDS sdhA NC_008209.1 1567480 1569285 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1567480..1569285 Roseobacter denitrificans OCh 114 4197083 YP_681942.1 CDS RD1_1629 NC_008209.1 1569245 1569643 D hypothetical protein 1569245..1569643 Roseobacter denitrificans OCh 114 4197084 YP_681943.1 CDS sdhB NC_008209.1 1569669 1570448 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1569669..1570448 Roseobacter denitrificans OCh 114 4197085 YP_681944.1 CDS RD1_1631 NC_008209.1 1570458 1571171 D hypothetical protein 1570458..1571171 Roseobacter denitrificans OCh 114 4197086 YP_681945.1 CDS RD1_1632 NC_008209.1 1571171 1571377 D hypothetical protein 1571171..1571377 Roseobacter denitrificans OCh 114 4197087 YP_681946.1 CDS RD1_1633 NC_008209.1 1571435 1572280 D hypothetical protein 1571435..1572280 Roseobacter denitrificans OCh 114 4197088 YP_681947.1 CDS deoD NC_008209.1 1572283 1572987 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(1572283..1572987) Roseobacter denitrificans OCh 114 4197089 YP_681948.1 CDS mutB NC_008209.1 1573051 1575018 R methylmalonyl-CoA mutase complement(1573051..1575018) Roseobacter denitrificans OCh 114 4197090 YP_681949.1 CDS RD1_1636 NC_008209.1 1575269 1576639 D acyltransferase 1575269..1576639 Roseobacter denitrificans OCh 114 4197091 YP_681950.1 CDS ccrA NC_008209.1 1576775 1578055 D crotonyl-CoA reductase 1576775..1578055 Roseobacter denitrificans OCh 114 4197092 YP_681951.1 CDS rhlR NC_008209.1 1578424 1579143 D transcriptional activator protein RaiR 1578424..1579143 Roseobacter denitrificans OCh 114 4197093 YP_681952.1 CDS tral NC_008209.1 1579259 1579897 D autoinducer synthesis protein Tral 1579259..1579897 Roseobacter denitrificans OCh 114 4197094 YP_681953.1 CDS RD1_1640 NC_008209.1 1580085 1581485 D hypothetical protein 1580085..1581485 Roseobacter denitrificans OCh 114 4197056 YP_681954.1 CDS RD1_1641 NC_008209.1 1581505 1582278 R hypothetical protein complement(1581505..1582278) Roseobacter denitrificans OCh 114 4197057 YP_681955.1 CDS RD1_1642 NC_008209.1 1582281 1583219 R hypothetical protein complement(1582281..1583219) Roseobacter denitrificans OCh 114 4197058 YP_681956.1 CDS RD1_1643 NC_008209.1 1583291 1584259 R sugar ABC transporter permease complement(1583291..1584259) Roseobacter denitrificans OCh 114 4197059 YP_681957.1 CDS RD1_1644 NC_008209.1 1584259 1585353 R sugar ABC transporter permease complement(1584259..1585353) Roseobacter denitrificans OCh 114 4197060 YP_681958.1 CDS RD1_1645 NC_008209.1 1585358 1586935 R sugar ABC transporter ATP-binding protein complement(1585358..1586935) Roseobacter denitrificans OCh 114 4197061 YP_681959.1 CDS RD1_1647 NC_008209.1 1586914 1587909 R sugar ABC transporter substrate-binding protein complement(1586914..1587909) Roseobacter denitrificans OCh 114 4197062 YP_681960.1 CDS RD1_1648 NC_008209.1 1588046 1588477 R ribosomal-protein-alanine acetyltransferase complement(1588046..1588477) Roseobacter denitrificans OCh 114 4197063 YP_681961.1 CDS RD1_1649 NC_008209.1 1588474 1589088 R glycoprotease family protein complement(1588474..1589088) Roseobacter denitrificans OCh 114 4197064 YP_681962.1 CDS RD1_1650 NC_008209.1 1589135 1589698 R NifU-like domain-containing protein complement(1589135..1589698) Roseobacter denitrificans OCh 114 4197065 YP_681963.1 CDS RD1_1652 NC_008209.1 1589928 1590383 R hypothetical protein complement(1589928..1590383) Roseobacter denitrificans OCh 114 4197066 YP_681964.1 CDS RD1_1653 NC_008209.1 1590521 1590916 D photopigment and puc activator 1590521..1590916 Roseobacter denitrificans OCh 114 4197067 YP_681965.1 CDS ilvE NC_008209.1 1590911 1591777 R aminotransferase complement(1590911..1591777) Roseobacter denitrificans OCh 114 4197068 YP_681966.1 CDS RD1_1655 NC_008209.1 1591849 1592076 R hypothetical protein complement(1591849..1592076) Roseobacter denitrificans OCh 114 4197069 YP_681967.1 CDS RD1_1656 NC_008209.1 1592204 1592914 D M48 family peptidase 1592204..1592914 Roseobacter denitrificans OCh 114 4197070 YP_681968.1 CDS RD1_1657 NC_008209.1 1592915 1593304 R hypothetical protein complement(1592915..1593304) Roseobacter denitrificans OCh 114 4197071 YP_681969.1 CDS RD1_1658 NC_008209.1 1593377 1593619 R hypothetical protein complement(1593377..1593619) Roseobacter denitrificans OCh 114 4197072 YP_681970.1 CDS rimO NC_008209.1 1593682 1595061 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(1593682..1595061) Roseobacter denitrificans OCh 114 4197073 YP_681971.1 CDS RD1_1660 NC_008209.1 1595127 1597079 D AsmA family protein 1595127..1597079 Roseobacter denitrificans OCh 114 4197074 YP_681972.1 CDS kdsA NC_008209.1 1597171 1598004 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1597171..1598004) Roseobacter denitrificans OCh 114 4197075 YP_681973.1 CDS RD1_1662 NC_008209.1 1598006 1598206 R hypothetical protein complement(1598006..1598206) Roseobacter denitrificans OCh 114 4197037 YP_681974.1 CDS RD1_1663 NC_008209.1 1598408 1599004 D hypothetical protein 1598408..1599004 Roseobacter denitrificans OCh 114 4197038 YP_681975.1 CDS RD1_1664 NC_008209.1 1599484 1600167 D hypothetical protein 1599484..1600167 Roseobacter denitrificans OCh 114 4197039 YP_681976.1 CDS RD1_1665 NC_008209.1 1600340 1600864 D hypothetical protein 1600340..1600864 Roseobacter denitrificans OCh 114 4197040 YP_681977.1 CDS RD1_1666 NC_008209.1 1600864 1601358 D hypothetical protein 1600864..1601358 Roseobacter denitrificans OCh 114 4197041 YP_681978.1 CDS RD1_1667 NC_008209.1 1601319 1601453 D hypothetical protein 1601319..1601453 Roseobacter denitrificans OCh 114 4197042 YP_681979.1 CDS opgH NC_008209.1 1601464 1603356 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(1601464..1603356) Roseobacter denitrificans OCh 114 4197043 YP_681980.1 CDS mdoG NC_008209.1 1603353 1604879 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(1603353..1604879) Roseobacter denitrificans OCh 114 4197044 YP_681981.1 CDS opgC NC_008209.1 1604879 1606099 R hypothetical protein complement(1604879..1606099) Roseobacter denitrificans OCh 114 4197045 YP_681982.1 CDS RD1_1671 NC_008209.1 1606148 1607488 R hypothetical protein complement(1606148..1607488) Roseobacter denitrificans OCh 114 4197046 YP_681983.1 CDS RD1_1673 NC_008209.1 1607674 1608882 R CAIB/BAIF family protein complement(1607674..1608882) Roseobacter denitrificans OCh 114 4197047 YP_681984.1 CDS alsS NC_008209.1 1608866 1610488 R acetolactate synthase complement(1608866..1610488) Roseobacter denitrificans OCh 114 4197048 YP_681985.1 CDS RD1_1675 NC_008209.1 1610609 1611172 R hypothetical protein complement(1610609..1611172) Roseobacter denitrificans OCh 114 4197049 YP_681986.1 CDS argD NC_008209.1 1611561 1612736 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase 1611561..1612736 Roseobacter denitrificans OCh 114 4197050 YP_681987.1 CDS argF NC_008209.1 1612796 1613722 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1612796..1613722 Roseobacter denitrificans OCh 114 4197051 YP_681988.1 CDS hrpB NC_008209.1 1613830 1616271 R ATP-dependent helicase HrpB complement(1613830..1616271) Roseobacter denitrificans OCh 114 4197052 YP_681989.1 CDS RD1_1679 NC_008209.1 1616365 1617354 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 1616365..1617354 Roseobacter denitrificans OCh 114 4197053 YP_681990.1 CDS rpmB NC_008209.1 1617428 1617790 D 50S ribosomal protein L28 1617428..1617790 Roseobacter denitrificans OCh 114 4197054 YP_681991.1 CDS RD1_1681 NC_008209.1 1617850 1618245 D hypothetical protein 1617850..1618245 Roseobacter denitrificans OCh 114 4197055 YP_681992.1 CDS RD1_1682 NC_008209.1 1618291 1618785 D hypothetical protein 1618291..1618785 Roseobacter denitrificans OCh 114 4197017 YP_681993.1 CDS npdA NC_008209.1 1618798 1619490 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(1618798..1619490) Roseobacter denitrificans OCh 114 4197018 YP_681994.1 CDS RD1_1684 NC_008209.1 1619629 1620504 D hydrolase 1619629..1620504 Roseobacter denitrificans OCh 114 4197019 YP_681995.1 CDS infA NC_008209.1 1620581 1620799 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1620581..1620799 Roseobacter denitrificans OCh 114 4197020 YP_681996.1 CDS maf NC_008209.1 1620803 1621369 D septum formation protein Maf 1620803..1621369 Roseobacter denitrificans OCh 114 4197021 YP_681997.1 CDS RD1_1687 NC_008209.1 1621366 1622388 D ribonuclease G 1621366..1622388 Roseobacter denitrificans OCh 114 4197022 YP_681998.1 CDS RD1_1688 NC_008209.1 1622385 1622582 D hypothetical protein 1622385..1622582 Roseobacter denitrificans OCh 114 4197023 YP_681999.1 CDS RD1_1689 NC_008209.1 1622598 1624169 R potassium efflux transporter complement(1622598..1624169) Roseobacter denitrificans OCh 114 4197024 YP_682000.1 CDS RD1_1690 NC_008209.1 1624079 1624345 R hypothetical protein complement(1624079..1624345) Roseobacter denitrificans OCh 114 4197025 YP_682001.1 CDS rrf NC_008209.1 1624370 1624813 R transcriptional regulator complement(1624370..1624813) Roseobacter denitrificans OCh 114 4197026 YP_682002.1 CDS RD1_1692 NC_008209.1 1624896 1625051 D hypothetical protein 1624896..1625051 Roseobacter denitrificans OCh 114 4197027 YP_682003.1 CDS RD1_1693 NC_008209.1 1625141 1625431 D hypothetical protein 1625141..1625431 Roseobacter denitrificans OCh 114 4197028 YP_682004.1 CDS nnrS NC_008209.1 1625456 1626661 D NnrS protein 1625456..1626661 Roseobacter denitrificans OCh 114 4197029 YP_682005.1 CDS nnrU NC_008209.1 1626658 1627326 D NnrU protein 1626658..1627326 Roseobacter denitrificans OCh 114 4197030 YP_682006.1 CDS hemN NC_008209.1 1627549 1628898 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1627549..1628898 Roseobacter denitrificans OCh 114 4197031 YP_682007.1 CDS bchE NC_008209.1 1629156 1630820 D magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 1629156..1630820 Roseobacter denitrificans OCh 114 4197032 YP_682008.1 CDS RD1_1698 NC_008209.1 1631057 1632271 D glycerophosphoryl diester phosphodiesterase family protein 1631057..1632271 Roseobacter denitrificans OCh 114 4197033 YP_682009.1 CDS RD1_1699 NC_008209.1 1632471 1633922 R sugar transferase complement(1632471..1633922) Roseobacter denitrificans OCh 114 4197034 YP_682010.1 CDS RD1_1700 NC_008209.1 1634085 1635086 R AraC family transcriptional regulator complement(1634085..1635086) Roseobacter denitrificans OCh 114 4197035 YP_682011.1 CDS soxB NC_008209.1 1635191 1636444 D sarcosine oxidase, beta subunit 1635191..1636444 Roseobacter denitrificans OCh 114 4197036 YP_682012.1 CDS soxD NC_008209.1 1636456 1636755 D sarcosine oxidase subunit delta 1636456..1636755 Roseobacter denitrificans OCh 114 4196998 YP_682013.1 CDS soxA NC_008209.1 1636752 1639754 D sarcosine oxidase, alpha subunit 1636752..1639754 Roseobacter denitrificans OCh 114 4196999 YP_682014.1 CDS soxG NC_008209.1 1639768 1640298 D sarcosine oxidase, gamma subunit 1639768..1640298 Roseobacter denitrificans OCh 114 4197000 YP_682015.1 CDS RD1_1707 NC_008209.1 1640453 1641601 R major facilitator transporter complement(1640453..1641601) Roseobacter denitrificans OCh 114 4197001 YP_682016.1 CDS RD1_1708 NC_008209.1 1641679 1642449 R hypothetical protein complement(1641679..1642449) Roseobacter denitrificans OCh 114 4197002 YP_682017.1 CDS RD1_1709 NC_008209.1 1642702 1644561 D diguanylate cyclase 1642702..1644561 Roseobacter denitrificans OCh 114 4197003 YP_682018.1 CDS RD1_1710 NC_008209.1 1644796 1644894 D hypothetical protein 1644796..1644894 Roseobacter denitrificans OCh 114 4197004 YP_682019.1 CDS RD1_1711 NC_008209.1 1644913 1645179 D hypothetical protein 1644913..1645179 Roseobacter denitrificans OCh 114 4197005 YP_682020.1 CDS RD1_1712 NC_008209.1 1645151 1645414 R hypothetical protein complement(1645151..1645414) Roseobacter denitrificans OCh 114 4197006 YP_682021.1 CDS RD1_1713 NC_008209.1 1645414 1646550 R acyl-CoA dehydrogenase complement(1645414..1646550) Roseobacter denitrificans OCh 114 4197007 YP_682022.1 CDS RD1_1714 NC_008209.1 1646731 1647045 R hypothetical protein complement(1646731..1647045) Roseobacter denitrificans OCh 114 4197008 YP_682023.1 CDS RD1_1715 NC_008209.1 1647154 1648704 R TRAP dicarboxylate transporter subunit DctM complement(1647154..1648704) Roseobacter denitrificans OCh 114 4197009 YP_682024.1 CDS RD1_1716 NC_008209.1 1648701 1649198 R TRAP transporter DctQ-like membrane protein complement(1648701..1649198) Roseobacter denitrificans OCh 114 4197010 YP_682025.1 CDS RD1_1717 NC_008209.1 1649261 1650346 R solute-binding family 7 protein complement(1649261..1650346) Roseobacter denitrificans OCh 114 4197011 YP_682026.1 CDS RD1_1718 NC_008209.1 1650379 1650501 R hypothetical protein complement(1650379..1650501) Roseobacter denitrificans OCh 114 4197012 YP_682027.1 CDS hutC NC_008209.1 1650682 1651383 D histidine utilization repressor 1650682..1651383 Roseobacter denitrificans OCh 114 4197013 YP_682028.1 CDS prsD NC_008209.1 1651647 1653377 D type I secretion system ATPase 1651647..1653377 Roseobacter denitrificans OCh 114 4197014 YP_682029.1 CDS RD1_1721 NC_008209.1 1653374 1654687 D HlyD family type I secretion membrane fusion protein 1653374..1654687 Roseobacter denitrificans OCh 114 4197015 YP_682030.1 CDS RD1_1722 NC_008209.1 1654865 1655098 D hypothetical protein 1654865..1655098 Roseobacter denitrificans OCh 114 4197016 YP_682031.1 CDS RD1_1723 NC_008209.1 1654992 1655246 D hypothetical protein 1654992..1655246 Roseobacter denitrificans OCh 114 4196978 YP_682032.1 CDS RD1_1724 NC_008209.1 1655259 1655870 D hypothetical protein 1655259..1655870 Roseobacter denitrificans OCh 114 4196979 YP_682033.1 CDS nagA NC_008209.1 1655919 1657049 R N-acetylglucosamine-6-phosphate deacetylase complement(1655919..1657049) Roseobacter denitrificans OCh 114 4196980 YP_682034.1 CDS RD1_1726 NC_008209.1 1657046 1658074 R SIS domain-containing protein complement(1657046..1658074) Roseobacter denitrificans OCh 114 4196981 YP_682035.1 CDS RD1_1727 NC_008209.1 1658071 1658835 R GntR family transcriptional regulator complement(1658071..1658835) Roseobacter denitrificans OCh 114 4196982 YP_682036.1 CDS RD1_1728 NC_008209.1 1658832 1659725 R N-acetylglucosamine kinase complement(1658832..1659725) Roseobacter denitrificans OCh 114 4196983 YP_682037.1 CDS RD1_1729 NC_008209.1 1660166 1661422 D sugar ABC transporter substrate-binding protein 1660166..1661422 Roseobacter denitrificans OCh 114 4196984 YP_682038.1 CDS RD1_1730 NC_008209.1 1661502 1662425 D sugar ABC transporter permease 1661502..1662425 Roseobacter denitrificans OCh 114 4196985 YP_682039.1 CDS RD1_1731 NC_008209.1 1662439 1663278 D sugar ABC transporter permease 1662439..1663278 Roseobacter denitrificans OCh 114 4196986 YP_682040.1 CDS RD1_1732 NC_008209.1 1663275 1664303 D oxidoreductase 1663275..1664303 Roseobacter denitrificans OCh 114 4196987 YP_682041.1 CDS RD1_1733 NC_008209.1 1664300 1665298 D sugar ABC transporter ATP-binding protein 1664300..1665298 Roseobacter denitrificans OCh 114 4196988 YP_682042.1 CDS RD1_1734 NC_008209.1 1665320 1665832 R lipoprotein complement(1665320..1665832) Roseobacter denitrificans OCh 114 4196989 YP_682043.1 CDS RD1_1735 NC_008209.1 1665814 1666323 R hypothetical protein complement(1665814..1666323) Roseobacter denitrificans OCh 114 4196990 YP_682044.1 CDS RD1_1736 NC_008209.1 1666253 1666387 D hypothetical protein 1666253..1666387 Roseobacter denitrificans OCh 114 4196991 YP_682045.1 CDS RD1_1737 NC_008209.1 1666355 1667605 R peptide ABC transporter permease complement(1666355..1667605) Roseobacter denitrificans OCh 114 4196992 YP_682046.1 CDS bceA NC_008209.1 1667602 1668303 R bacitracin export ATP-binding protein complement(1667602..1668303) Roseobacter denitrificans OCh 114 4196993 YP_682047.1 CDS RD1_1739 NC_008209.1 1668317 1668973 R hypothetical protein complement(1668317..1668973) Roseobacter denitrificans OCh 114 4196994 YP_682048.1 CDS pcm NC_008209.1 1669444 1670097 D protein-L-isoaspartate O-methyltransferase 1669444..1670097 Roseobacter denitrificans OCh 114 4196995 YP_682049.1 CDS RD1_1742 NC_008209.1 1670179 1671579 D TolC family type I secretion outer membrane protein 1670179..1671579 Roseobacter denitrificans OCh 114 4196996 YP_682050.1 CDS RD1_1743 NC_008209.1 1671652 1672395 D hypothetical protein 1671652..1672395 Roseobacter denitrificans OCh 114 4196997 YP_682051.1 CDS RD1_1744 NC_008209.1 1672532 1673044 D hypothetical protein 1672532..1673044 Roseobacter denitrificans OCh 114 4196959 YP_682052.1 CDS RD1_1745 NC_008209.1 1673094 1673414 R hypothetical protein complement(1673094..1673414) Roseobacter denitrificans OCh 114 4196960 YP_682053.1 CDS efp NC_008209.1 1673634 1674197 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1673634..1674197 Roseobacter denitrificans OCh 114 4196961 YP_682054.1 CDS RD1_1747 NC_008209.1 1674236 1674973 R glycine cleavage system protein T complement(1674236..1674973) Roseobacter denitrificans OCh 114 4196962 YP_682055.1 CDS RD1_1748 NC_008209.1 1675041 1675715 D glycosyl transferase family protein 1675041..1675715 Roseobacter denitrificans OCh 114 4196963 YP_682056.1 CDS RD1_1749 NC_008209.1 1675712 1677565 R efflux ABC transporter transmembrane ATP-binding protein complement(1675712..1677565) Roseobacter denitrificans OCh 114 4196964 YP_682057.1 CDS sgaA NC_008209.1 1677707 1678939 D serine--glyoxylate aminotransferase 1677707..1678939 Roseobacter denitrificans OCh 114 4196965 YP_682058.1 CDS RD1_1751 NC_008209.1 1678912 1679130 R hypothetical protein complement(1678912..1679130) Roseobacter denitrificans OCh 114 4196966 YP_682059.1 CDS RD1_1752 NC_008209.1 1679185 1680288 R catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate; histidinol-phosphate aminotransferase complement(1679185..1680288) Roseobacter denitrificans OCh 114 4196967 YP_682060.1 CDS RD1_1753 NC_008209.1 1680402 1681190 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1680402..1681190 Roseobacter denitrificans OCh 114 4196968 YP_682061.1 CDS valS NC_008209.1 1681228 1684323 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1681228..1684323) Roseobacter denitrificans OCh 114 4196969 YP_682062.1 CDS RD1_1756 NC_008209.1 1684399 1684998 R hypothetical protein complement(1684399..1684998) Roseobacter denitrificans OCh 114 4196970 YP_682063.1 CDS RD1_1757 NC_008209.1 1684995 1685873 R phytanoyl-CoA dioxygenase complement(1684995..1685873) Roseobacter denitrificans OCh 114 4196971 YP_682064.1 CDS RD1_1758 NC_008209.1 1686067 1688364 D dehydrogenase 1686067..1688364 Roseobacter denitrificans OCh 114 4196972 YP_682065.1 CDS RD1_1759 NC_008209.1 1688342 1689421 D hypothetical protein 1688342..1689421 Roseobacter denitrificans OCh 114 4196973 YP_682066.1 CDS RD1_1761 NC_008209.1 1689686 1690168 R thioesterase family protein complement(1689686..1690168) Roseobacter denitrificans OCh 114 4196974 YP_682067.1 CDS metF NC_008209.1 1690229 1691098 R 5,10-methylenetetrahydrofolate reductase complement(1690229..1691098) Roseobacter denitrificans OCh 114 4196975 YP_682068.1 CDS metR NC_008209.1 1691186 1692091 D HTH-type transcriptional regulator metR 1691186..1692091 Roseobacter denitrificans OCh 114 4196976 YP_682069.1 CDS RD1_1764 NC_008209.1 1692268 1693125 R hypothetical protein complement(1692268..1693125) Roseobacter denitrificans OCh 114 4196977 YP_682070.1 CDS RD1_1765 NC_008209.1 1693287 1693514 R hypothetical protein complement(1693287..1693514) Roseobacter denitrificans OCh 114 4196939 YP_682071.1 CDS RD1_1766 NC_008209.1 1693511 1694002 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1693511..1694002) Roseobacter denitrificans OCh 114 4196940 YP_682072.1 CDS cycH NC_008209.1 1693999 1695240 R cytochrome c-type biogenesis protein CycH complement(1693999..1695240) Roseobacter denitrificans OCh 114 4196941 YP_682073.1 CDS RD1_1769 NC_008209.1 1695377 1696066 D hypothetical protein 1695377..1696066 Roseobacter denitrificans OCh 114 4196942 YP_682074.1 CDS RD1_1768 NC_008209.1 1695485 1695721 R hypothetical protein complement(1695485..1695721) Roseobacter denitrificans OCh 114 4196943 YP_682075.1 CDS RD1_1770 NC_008209.1 1696158 1696664 D hypothetical protein 1696158..1696664 Roseobacter denitrificans OCh 114 4196944 YP_682076.1 CDS RD1_1771 NC_008209.1 1696669 1697103 D hypothetical protein 1696669..1697103 Roseobacter denitrificans OCh 114 4196945 YP_682077.1 CDS sodB NC_008209.1 1697214 1697813 D superoxide dismutase 1697214..1697813 Roseobacter denitrificans OCh 114 4196946 YP_682078.1 CDS RD1_1773 NC_008209.1 1697993 1698559 R decarboxylase complement(1697993..1698559) Roseobacter denitrificans OCh 114 4196947 YP_682079.1 CDS RD1_1774 NC_008209.1 1698685 1699971 D lysM domain-containing protein 1698685..1699971 Roseobacter denitrificans OCh 114 4196948 YP_682080.1 CDS RD1_1775 NC_008209.1 1700044 1701882 D ABC transporter ATP-binding protein 1700044..1701882 Roseobacter denitrificans OCh 114 4196949 YP_682081.1 CDS RD1_1776 NC_008209.1 1701949 1702641 D hypothetical protein 1701949..1702641 Roseobacter denitrificans OCh 114 4196950 YP_682082.1 CDS RD1_1777 NC_008209.1 1702694 1703149 R hypothetical protein complement(1702694..1703149) Roseobacter denitrificans OCh 114 4196951 YP_682083.1 CDS RD1_1778 NC_008209.1 1703226 1707023 R AcrB/AcrD/AcrF family protein complement(1703226..1707023) Roseobacter denitrificans OCh 114 4196952 YP_682084.1 CDS RD1_1779 NC_008209.1 1707020 1708258 R hypothetical protein complement(1707020..1708258) Roseobacter denitrificans OCh 114 4196953 YP_682085.1 CDS RD1_1780 NC_008209.1 1708380 1709150 D hypothetical protein 1708380..1709150 Roseobacter denitrificans OCh 114 4196954 YP_682086.1 CDS RD1_1781 NC_008209.1 1709222 1710565 D PQQ repeat-containing protein 1709222..1710565 Roseobacter denitrificans OCh 114 4196955 YP_682087.1 CDS engA NC_008209.1 1710618 1712096 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1710618..1712096 Roseobacter denitrificans OCh 114 4196956 YP_682088.1 CDS RD1_1784 NC_008209.1 1712196 1712915 R hypothetical protein complement(1712196..1712915) Roseobacter denitrificans OCh 114 4196957 YP_682089.1 CDS RD1_1785 NC_008209.1 1713028 1714158 D hypothetical protein 1713028..1714158 Roseobacter denitrificans OCh 114 4196958 YP_682090.1 CDS RD1_1786 NC_008209.1 1714229 1714720 D hypothetical protein 1714229..1714720 Roseobacter denitrificans OCh 114 4196920 YP_682091.1 CDS gill NC_008209.1 1714876 1716309 D glutamate dehydrogenase 1714876..1716309 Roseobacter denitrificans OCh 114 4196921 YP_682092.1 CDS soxB NC_008209.1 1716627 1717880 D sarcosine oxidase, beta subunit 1716627..1717880 Roseobacter denitrificans OCh 114 4196922 YP_682093.1 CDS soxD NC_008209.1 1717921 1718190 D sarcosine oxidase subunit delta 1717921..1718190 Roseobacter denitrificans OCh 114 4196923 YP_682094.1 CDS soxA NC_008209.1 1718187 1721114 D sarcosine oxidase, alpha subunit 1718187..1721114 Roseobacter denitrificans OCh 114 4196924 YP_682095.1 CDS soxG NC_008209.1 1721107 1721652 D sarcosine oxidase, gamma subunit 1721107..1721652 Roseobacter denitrificans OCh 114 4196925 YP_682096.1 CDS RD1_1792 NC_008209.1 1721685 1721987 D hypothetical protein 1721685..1721987 Roseobacter denitrificans OCh 114 4196926 YP_682097.1 CDS dnaG NC_008209.1 1722072 1724027 D synthesizes RNA primers at the replication forks; DNA primase 1722072..1724027 Roseobacter denitrificans OCh 114 4196927 YP_682098.1 CDS rpoD NC_008209.1 1724150 1726135 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1724150..1726135 Roseobacter denitrificans OCh 114 4196928 YP_682099.1 CDS RD1_1795 NC_008209.1 1726859 1727143 D hypothetical protein 1726859..1727143 Roseobacter denitrificans OCh 114 4196929 YP_682100.1 CDS RD1_1796 NC_008209.1 1727218 1727634 D hypothetical protein 1727218..1727634 Roseobacter denitrificans OCh 114 4196930 YP_682101.1 CDS RD1_1797 NC_008209.1 1727668 1728090 D hypothetical protein 1727668..1728090 Roseobacter denitrificans OCh 114 4196931 YP_682102.1 CDS nrdR NC_008209.1 1728225 1728692 D transcriptional regulator NrdR 1728225..1728692 Roseobacter denitrificans OCh 114 4196932 YP_682103.1 CDS ribD NC_008209.1 1728689 1729786 D riboflavin biosynthesis protein ribD 1728689..1729786 Roseobacter denitrificans OCh 114 4196933 YP_682104.1 CDS ribE NC_008209.1 1729930 1730523 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1729930..1730523 Roseobacter denitrificans OCh 114 4196934 YP_682105.1 CDS ribB NC_008209.1 1730594 1731718 D 3,4-dihydroxy-2-butanone 4-phosphate synthase 1730594..1731718 Roseobacter denitrificans OCh 114 4196935 YP_682106.1 CDS ribH NC_008209.1 1731722 1732273 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1731722..1732273 Roseobacter denitrificans OCh 114 4196936 YP_682107.1 CDS nusB NC_008209.1 1732315 1732752 D N utilization substance protein B-like protein 1732315..1732752 Roseobacter denitrificans OCh 114 4196937 YP_682108.1 CDS RD1_1805 NC_008209.1 1732756 1733061 D hypothetical protein 1732756..1733061 Roseobacter denitrificans OCh 114 4196938 YP_682109.1 CDS RD1_1806 NC_008209.1 1733186 1733299 D hypothetical protein 1733186..1733299 Roseobacter denitrificans OCh 114 4196901 YP_682110.1 CDS RD1_1807 NC_008209.1 1733591 1734049 D hypothetical protein 1733591..1734049 Roseobacter denitrificans OCh 114 4196902 YP_682111.1 CDS RD1_1808 NC_008209.1 1734061 1734246 R hypothetical protein complement(1734061..1734246) Roseobacter denitrificans OCh 114 4196903 YP_682112.1 CDS RD1_1809 NC_008209.1 1734326 1734808 D acetyltransferase 1734326..1734808 Roseobacter denitrificans OCh 114 4196904 YP_682113.1 CDS RD1_1811 NC_008209.1 1735025 1736038 D AraC family transcriptional regulator 1735025..1736038 Roseobacter denitrificans OCh 114 4196906 YP_682114.1 CDS RD1_1812 NC_008209.1 1736049 1736357 R hypothetical protein complement(1736049..1736357) Roseobacter denitrificans OCh 114 4196907 YP_682115.1 CDS rluD NC_008209.1 1736356 1737384 D ribosomal large subunit pseudouridine synthase D 1736356..1737384 Roseobacter denitrificans OCh 114 4196908 YP_682116.1 CDS rpoH NC_008209.1 1737568 1738464 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1737568..1738464 Roseobacter denitrificans OCh 114 4196909 YP_682117.1 CDS pepF NC_008209.1 1738606 1740426 R oligoendopeptidase F complement(1738606..1740426) Roseobacter denitrificans OCh 114 4196910 YP_682118.1 CDS RD1_1816 NC_008209.1 1740635 1741528 D hypothetical protein 1740635..1741528 Roseobacter denitrificans OCh 114 4196911 YP_682119.1 CDS dnlI NC_008209.1 1741635 1743233 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1741635..1743233) Roseobacter denitrificans OCh 114 4196912 YP_682120.1 CDS RD1_1818 NC_008209.1 1743230 1744243 R hypothetical protein complement(1743230..1744243) Roseobacter denitrificans OCh 114 4196913 YP_682121.1 CDS pldB NC_008209.1 1744282 1745160 R lysophospholipase complement(1744282..1745160) Roseobacter denitrificans OCh 114 4196914 YP_682122.1 CDS RD1_1820 NC_008209.1 1745229 1745519 R hypothetical protein complement(1745229..1745519) Roseobacter denitrificans OCh 114 4196915 YP_682123.1 CDS RD1_1821 NC_008209.1 1745561 1746151 D hypothetical protein 1745561..1746151 Roseobacter denitrificans OCh 114 4196916 YP_682124.1 CDS RD1_1822 NC_008209.1 1746176 1749010 D helicase 1746176..1749010 Roseobacter denitrificans OCh 114 4196917 YP_682125.1 CDS hslR NC_008209.1 1749011 1749388 D heat shock protein 1749011..1749388 Roseobacter denitrificans OCh 114 4196918 YP_682126.1 CDS fdxA NC_008209.1 1749442 1749780 D ferredoxin II 1749442..1749780 Roseobacter denitrificans OCh 114 4196919 YP_682127.1 CDS RD1_1825 NC_008209.1 1750054 1750566 D CarD family transcriptional regulator 1750054..1750566 Roseobacter denitrificans OCh 114 4196882 YP_682128.1 CDS cobS NC_008209.1 1750617 1751366 R cobalamin 5'-phosphate synthase complement(1750617..1751366) Roseobacter denitrificans OCh 114 4196883 YP_682129.1 CDS cobT NC_008209.1 1751460 1752473 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1751460..1752473 Roseobacter denitrificans OCh 114 4196884 YP_682130.1 CDS kefC NC_008209.1 1752488 1754371 R glutathione-regulated potassium-efflux system protein complement(1752488..1754371) Roseobacter denitrificans OCh 114 4196885 YP_682131.1 CDS RD1_1829 NC_008209.1 1754394 1754849 R AsnC family transcriptional regulator complement(1754394..1754849) Roseobacter denitrificans OCh 114 4196886 YP_682132.1 CDS hppD NC_008209.1 1755006 1756100 D 4-hydroxyphenylpyruvate dioxygenase 1755006..1756100 Roseobacter denitrificans OCh 114 4196887 YP_682133.1 CDS RD1_1832 NC_008209.1 1756111 1758378 R hypothetical protein complement(1756111..1758378) Roseobacter denitrificans OCh 114 4196888 YP_682134.1 CDS RD1_1831 NC_008209.1 1756295 1756684 D hypothetical protein 1756295..1756684 Roseobacter denitrificans OCh 114 4196889 YP_682135.1 CDS RD1_1833 NC_008209.1 1758487 1759185 D hypothetical protein 1758487..1759185 Roseobacter denitrificans OCh 114 4196890 YP_682136.1 CDS metB NC_008209.1 1759240 1760538 R O-acetylhomoserine sulfhydrylase complement(1759240..1760538) Roseobacter denitrificans OCh 114 4196891 YP_682137.1 CDS RD1_1835 NC_008209.1 1760923 1762056 D aminotransferase 1760923..1762056 Roseobacter denitrificans OCh 114 4196892 YP_682138.1 CDS RD1_1837 NC_008209.1 1762093 1762983 R LysR family transcriptional regulator complement(1762093..1762983) Roseobacter denitrificans OCh 114 4196893 YP_682139.1 CDS RD1_1838 NC_008209.1 1763174 1764187 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 1763174..1764187 Roseobacter denitrificans OCh 114 4196894 YP_682140.1 CDS RD1_1839 NC_008209.1 1764222 1765181 D glycine betaine/L-proline ABC transporter substrate binding protein 1764222..1765181 Roseobacter denitrificans OCh 114 4196895 YP_682141.1 CDS RD1_1840 NC_008209.1 1765231 1765887 R hypothetical protein complement(1765231..1765887) Roseobacter denitrificans OCh 114 4196896 YP_682142.1 CDS RD1_1841 NC_008209.1 1766308 1767849 D glycine betaine/L-proline transport system permease 1766308..1767849 Roseobacter denitrificans OCh 114 4196897 YP_682143.1 CDS RD1_1842 NC_008209.1 1767846 1768589 D hydrolase 1767846..1768589 Roseobacter denitrificans OCh 114 4196898 YP_682144.1 CDS RD1_1843 NC_008209.1 1768711 1768929 D hypothetical protein 1768711..1768929 Roseobacter denitrificans OCh 114 4196899 YP_682145.1 CDS RD1_1845 NC_008209.1 1769207 1769599 R hypothetical protein complement(1769207..1769599) Roseobacter denitrificans OCh 114 4196900 YP_682146.1 CDS RD1_1848 NC_008209.1 1770838 1772070 R site-specific DNA recombinase complement(1770838..1772070) Roseobacter denitrificans OCh 114 4196866 YP_682147.1 CDS RD1_1849 NC_008209.1 1772055 1772351 R hypothetical protein complement(1772055..1772351) Roseobacter denitrificans OCh 114 4196867 YP_682148.1 CDS RD1_1850 NC_008209.1 1772561 1773316 D hypothetical protein 1772561..1773316 Roseobacter denitrificans OCh 114 4196868 YP_682149.1 CDS RD1_1851 NC_008209.1 1774220 1774486 D hypothetical protein 1774220..1774486 Roseobacter denitrificans OCh 114 4196869 YP_682150.2 CDS RD1_1852 NC_008209.1 1774522 1775334 D integrase catalytic subunit 1774522..1775334 Roseobacter denitrificans OCh 114 4196870 YP_682151.1 CDS RD1_1854 NC_008209.1 1776600 1776698 D hypothetical protein 1776600..1776698 Roseobacter denitrificans OCh 114 4196872 YP_682152.1 CDS RD1_1855 NC_008209.1 1776726 1777259 R rrf2 family transcriptional regulator complement(1776726..1777259) Roseobacter denitrificans OCh 114 4196873 YP_682153.1 CDS RD1_1856 NC_008209.1 1777253 1778464 D cobalamin synthesis protein 1777253..1778464 Roseobacter denitrificans OCh 114 4196874 YP_682154.1 CDS RD1_1857 NC_008209.1 1778497 1779096 D hypothetical protein 1778497..1779096 Roseobacter denitrificans OCh 114 4196875 YP_682155.1 CDS RD1_1858 NC_008209.1 1779093 1779359 D hypothetical protein 1779093..1779359 Roseobacter denitrificans OCh 114 4196876 YP_682156.1 CDS RD1_1859 NC_008209.1 1779379 1780902 D dipeptide ABC transporter substrate-binding protein 1779379..1780902 Roseobacter denitrificans OCh 114 4196877 YP_682157.1 CDS RD1_1860 NC_008209.1 1781132 1781362 R hypothetical protein complement(1781132..1781362) Roseobacter denitrificans OCh 114 4196878 YP_682158.1 CDS RD1_1861 NC_008209.1 1781576 1782301 D ABC transporter ATP-binding protein 1781576..1782301 Roseobacter denitrificans OCh 114 4196879 YP_682159.1 CDS RD1_1862 NC_008209.1 1782298 1783236 D oligopeptide ABC transporter permease 1782298..1783236 Roseobacter denitrificans OCh 114 4196880 YP_682160.1 CDS nikC NC_008209.1 1783229 1784023 D nickel transport system permease nikC 1783229..1784023 Roseobacter denitrificans OCh 114 4196881 YP_682161.1 CDS RD1_1864 NC_008209.1 1784020 1784913 D hypothetical protein 1784020..1784913 Roseobacter denitrificans OCh 114 4196845 YP_682162.1 CDS RD1_1865 NC_008209.1 1785070 1786575 R hypothetical protein complement(1785070..1786575) Roseobacter denitrificans OCh 114 4196846 YP_682163.1 CDS RD1_1866 NC_008209.1 1786572 1787048 R hypothetical protein complement(1786572..1787048) Roseobacter denitrificans OCh 114 4196847 YP_682164.1 CDS RD1_1867 NC_008209.1 1787099 1788088 R hypothetical protein complement(1787099..1788088) Roseobacter denitrificans OCh 114 4196848 YP_682165.1 CDS RD1_1868 NC_008209.1 1788422 1789981 D 4-coumarate--CoA ligase 1788422..1789981 Roseobacter denitrificans OCh 114 4196849 YP_682166.1 CDS mucS NC_008209.1 1790282 1790794 D MarR family transcriptional regulator 1790282..1790794 Roseobacter denitrificans OCh 114 4196850 YP_682167.1 CDS RD1_1870 NC_008209.1 1790798 1791514 R von Willebrand factor A complement(1790798..1791514) Roseobacter denitrificans OCh 114 4196851 YP_682168.1 CDS RD1_1871 NC_008209.1 1791517 1792230 R von Willebrand factor A complement(1791517..1792230) Roseobacter denitrificans OCh 114 4196852 YP_682169.1 CDS gloA NC_008209.1 1792224 1792652 R lactoylglutathione lyase complement(1792224..1792652) Roseobacter denitrificans OCh 114 4196853 YP_682170.1 CDS RD1_1873 NC_008209.1 1792759 1792899 D hypothetical protein 1792759..1792899 Roseobacter denitrificans OCh 114 4196854 YP_682171.1 CDS thyA NC_008209.1 1793032 1793865 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1793032..1793865 Roseobacter denitrificans OCh 114 4196855 YP_682172.1 CDS folA NC_008209.1 1793869 1794348 D dihydrofolate reductase 1793869..1794348 Roseobacter denitrificans OCh 114 4196856 YP_682173.1 CDS y4cH NC_008209.1 1794462 1794668 R cold shock family protein-related protein complement(1794462..1794668) Roseobacter denitrificans OCh 114 4196857 YP_682174.1 CDS RD1_1877 NC_008209.1 1794862 1795179 D ArsC family protein 1794862..1795179 Roseobacter denitrificans OCh 114 4196858 YP_682175.1 CDS RD1_1878 NC_008209.1 1795186 1795740 R DoxX subfamily protein complement(1795186..1795740) Roseobacter denitrificans OCh 114 4196859 YP_682176.1 CDS RD1_1879 NC_008209.1 1795737 1796495 R hypothetical protein complement(1795737..1796495) Roseobacter denitrificans OCh 114 4196860 YP_682177.1 CDS RD1_1880 NC_008209.1 1796492 1797346 R hypothetical protein complement(1796492..1797346) Roseobacter denitrificans OCh 114 4196861 YP_682178.1 CDS RD1_1881 NC_008209.1 1797428 1797730 R hypothetical protein complement(1797428..1797730) Roseobacter denitrificans OCh 114 4196862 YP_682179.1 CDS RD1_1882 NC_008209.1 1797817 1797918 D hypothetical protein 1797817..1797918 Roseobacter denitrificans OCh 114 4196863 YP_682180.1 CDS thrS NC_008209.1 1797934 1799880 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1797934..1799880) Roseobacter denitrificans OCh 114 4196825 YP_682181.1 CDS RD1_1884 NC_008209.1 1800079 1800324 D hypothetical protein 1800079..1800324 Roseobacter denitrificans OCh 114 4196826 YP_682182.1 CDS RD1_1885 NC_008209.1 1800579 1801334 D hypothetical protein 1800579..1801334 Roseobacter denitrificans OCh 114 4196827 YP_682183.1 CDS RD1_1886 NC_008209.1 1801487 1802200 D hydrolase 1801487..1802200 Roseobacter denitrificans OCh 114 4196828 YP_682184.1 CDS phaZ NC_008209.1 1802211 1803497 R polyhydroxyalkanoate depolymerase complement(1802211..1803497) Roseobacter denitrificans OCh 114 4196829 YP_682185.1 CDS phaC NC_008209.1 1803607 1805412 D poly(3-hydroxyalkanoate) polymerase 1803607..1805412 Roseobacter denitrificans OCh 114 4196830 YP_682186.1 CDS RD1_1889 NC_008209.1 1805553 1805999 D hypothetical protein 1805553..1805999 Roseobacter denitrificans OCh 114 4196831 YP_682187.1 CDS RD1_1890 NC_008209.1 1806045 1806701 D polyhydroxyalkanoate synthesis repressor 1806045..1806701 Roseobacter denitrificans OCh 114 4196832 YP_682188.1 CDS RD1_1891 NC_008209.1 1806813 1808117 R oxidoreductase, FAD-binding complement(1806813..1808117) Roseobacter denitrificans OCh 114 4196833 YP_682189.1 CDS RD1_1892 NC_008209.1 1808136 1809494 R glutamine synthetase complement(1808136..1809494) Roseobacter denitrificans OCh 114 4196834 YP_682190.1 CDS RD1_1893 NC_008209.1 1809479 1810171 R glutamine amidotransferase complement(1809479..1810171) Roseobacter denitrificans OCh 114 4196835 YP_682191.1 CDS RD1_1894 NC_008209.1 1810175 1811509 R glutamine synthetase complement(1810175..1811509) Roseobacter denitrificans OCh 114 4196836 YP_682192.1 CDS hisM NC_008209.1 1811597 1812343 R histidine ABC transporter permease complement(1811597..1812343) Roseobacter denitrificans OCh 114 4196837 YP_682193.1 CDS RD1_1897 NC_008209.1 1812400 1813236 R arginine/histidine-ABC transporter permease complement(1812400..1813236) Roseobacter denitrificans OCh 114 4196838 YP_682194.1 CDS RD1_1898 NC_008209.1 1813344 1814072 R ABC transporter substrate-binding protein complement(1813344..1814072) Roseobacter denitrificans OCh 114 4196839 YP_682195.1 CDS RD1_1899 NC_008209.1 1814100 1814876 R amino acid ABC transporter ATP-binding protein complement(1814100..1814876) Roseobacter denitrificans OCh 114 4196840 YP_682196.1 CDS RD1_1900 NC_008209.1 1814988 1815743 R hypothetical protein complement(1814988..1815743) Roseobacter denitrificans OCh 114 4196841 YP_682197.1 CDS RD1_1901 NC_008209.1 1815740 1816180 R hypothetical protein complement(1815740..1816180) Roseobacter denitrificans OCh 114 4196842 YP_682198.1 CDS RD1_1902 NC_008209.1 1816219 1816668 R hypothetical protein complement(1816219..1816668) Roseobacter denitrificans OCh 114 4196843 YP_682199.1 CDS RD1_1903 NC_008209.1 1816716 1816826 D hypothetical protein 1816716..1816826 Roseobacter denitrificans OCh 114 4196844 YP_682200.1 CDS RD1_1904 NC_008209.1 1816869 1817660 R hypothetical protein complement(1816869..1817660) Roseobacter denitrificans OCh 114 4196806 YP_682201.1 CDS RD1_1905 NC_008209.1 1817789 1818547 R hypothetical protein complement(1817789..1818547) Roseobacter denitrificans OCh 114 4196807 YP_682202.1 CDS pyrG NC_008209.1 1818752 1820395 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1818752..1820395) Roseobacter denitrificans OCh 114 4196808 YP_682203.1 CDS secG NC_008209.1 1820573 1820938 R preprotein translocase subunit SecG complement(1820573..1820938) Roseobacter denitrificans OCh 114 4196809 YP_682204.1 CDS nthA NC_008209.1 1821202 1821834 D nitrile hydratase subunit alpha 1821202..1821834 Roseobacter denitrificans OCh 114 4196810 YP_682205.1 CDS nthB NC_008209.1 1821831 1822505 D nitrile hydratase subunit beta 1821831..1822505 Roseobacter denitrificans OCh 114 4196811 YP_682206.1 CDS RD1_1910 NC_008209.1 1822475 1822816 D hypothetical protein 1822475..1822816 Roseobacter denitrificans OCh 114 4196812 YP_682207.1 CDS RD1_1911 NC_008209.1 1822841 1823203 R hypothetical protein complement(1822841..1823203) Roseobacter denitrificans OCh 114 4196813 YP_682208.1 CDS purA NC_008209.1 1823341 1824705 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1823341..1824705 Roseobacter denitrificans OCh 114 4196814 YP_682209.1 CDS RD1_1913 NC_008209.1 1824717 1824941 D hypothetical protein 1824717..1824941 Roseobacter denitrificans OCh 114 4196815 YP_682210.1 CDS RD1_1914 NC_008209.1 1824959 1826602 R lipoprotein complement(1824959..1826602) Roseobacter denitrificans OCh 114 4196816 YP_682211.1 CDS thiN NC_008209.1 1826741 1827451 D thiamine pyrophosphokinase 1826741..1827451 Roseobacter denitrificans OCh 114 4196817 YP_682212.1 CDS RD1_1916 NC_008209.1 1827351 1828286 R hypothetical protein complement(1827351..1828286) Roseobacter denitrificans OCh 114 4196818 YP_682213.1 CDS sdaA NC_008209.1 1828342 1829718 R L-serine ammonia-lyase complement(1828342..1829718) Roseobacter denitrificans OCh 114 4196819 YP_682214.1 CDS rpiA NC_008209.1 1830290 1831078 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1830290..1831078 Roseobacter denitrificans OCh 114 4196820 YP_682215.1 CDS gor NC_008209.1 1831174 1832628 D glutathione reductase 1831174..1832628 Roseobacter denitrificans OCh 114 4196821 YP_682216.1 CDS RD1_1920 NC_008209.1 1832702 1833865 D HflK protein 1832702..1833865 Roseobacter denitrificans OCh 114 4196822 YP_682217.1 CDS hflC NC_008209.1 1833865 1834764 D HflC protein 1833865..1834764 Roseobacter denitrificans OCh 114 4196823 YP_682218.1 CDS RD1_1922 NC_008209.1 1834761 1834958 D hypothetical protein 1834761..1834958 Roseobacter denitrificans OCh 114 4196824 YP_682219.1 CDS degP NC_008209.1 1835107 1836570 D serine protease DO-like precursor 1835107..1836570 Roseobacter denitrificans OCh 114 4196786 YP_682220.1 CDS dnaE2 NC_008209.1 1836635 1837030 R DNA polymerase III subunit alpha complement(1836635..1837030) Roseobacter denitrificans OCh 114 4196787 YP_682221.1 CDS fdx NC_008209.1 1837155 1837478 D ferredoxin VI 1837155..1837478 Roseobacter denitrificans OCh 114 4196788 YP_682222.1 CDS RD1_1926 NC_008209.1 1837478 1838224 D hypothetical protein 1837478..1838224 Roseobacter denitrificans OCh 114 4196789 YP_682223.1 CDS purD NC_008209.1 1838325 1839590 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1838325..1839590) Roseobacter denitrificans OCh 114 4196790 YP_682224.1 CDS xseA NC_008209.1 1839670 1841211 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1839670..1841211 Roseobacter denitrificans OCh 114 4196791 YP_682225.1 CDS RD1_1930 NC_008209.1 1841318 1841734 R hypothetical protein complement(1841318..1841734) Roseobacter denitrificans OCh 114 4196792 YP_682226.1 CDS RD1_1931 NC_008209.1 1841946 1842149 D hypothetical protein 1841946..1842149 Roseobacter denitrificans OCh 114 4196793 YP_682227.1 CDS ftsY NC_008209.1 1842164 1843702 D signal recognition particle-docking protein FtsY 1842164..1843702 Roseobacter denitrificans OCh 114 4196794 YP_682228.1 CDS RD1_1933 NC_008209.1 1843773 1844681 D hypothetical protein 1843773..1844681 Roseobacter denitrificans OCh 114 4196795 YP_682229.1 CDS ispZ NC_008209.1 1844691 1845305 D intracellular septation protein 1844691..1845305 Roseobacter denitrificans OCh 114 4196796 YP_682230.1 CDS RD1_1935 NC_008209.1 1845302 1845997 R cyclic nucleotide-binding domain-containing protein complement(1845302..1845997) Roseobacter denitrificans OCh 114 4196797 YP_682231.1 CDS gst NC_008209.1 1846137 1846841 R glutathione S-transferase complement(1846137..1846841) Roseobacter denitrificans OCh 114 4196798 YP_682232.1 CDS RD1_1938 NC_008209.1 1846825 1847817 R hypothetical protein complement(1846825..1847817) Roseobacter denitrificans OCh 114 4196799 YP_682233.1 CDS metZ NC_008209.1 1848071 1849252 D O-succinylhomoserine sulfhydrylase 1848071..1849252 Roseobacter denitrificans OCh 114 4196800 YP_682234.1 CDS RD1_1940 NC_008209.1 1849175 1849270 R hypothetical protein complement(1849175..1849270) Roseobacter denitrificans OCh 114 4196801 YP_682235.1 CDS RD1_1941 NC_008209.1 1849379 1850518 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 1849379..1850518 Roseobacter denitrificans OCh 114 4196802 YP_682236.1 CDS trkH-1 NC_008209.1 1850634 1852124 D Trk system potassium uptake protein 1850634..1852124 Roseobacter denitrificans OCh 114 4196803 YP_682237.1 CDS ilvB NC_008209.1 1852126 1853718 D acetohydroxy acid synthase large subunit 1852126..1853718 Roseobacter denitrificans OCh 114 4196804 YP_682238.1 CDS RD1_1944 NC_008209.1 1853729 1855501 R peptidoglycan binding domain-containing protein complement(1853729..1855501) Roseobacter denitrificans OCh 114 4196805 YP_682239.1 CDS glyQ NC_008209.1 1855659 1856600 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1855659..1856600 Roseobacter denitrificans OCh 114 4196767 YP_682240.1 CDS RD1_1946 NC_008209.1 1856597 1857118 D hypothetical protein 1856597..1857118 Roseobacter denitrificans OCh 114 4196768 YP_682241.1 CDS glyS NC_008209.1 1857118 1859304 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1857118..1859304 Roseobacter denitrificans OCh 114 4196769 YP_682242.1 CDS ppdK NC_008209.1 1859397 1861934 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1859397..1861934 Roseobacter denitrificans OCh 114 4196770 YP_682243.1 CDS RD1_1949 NC_008209.1 1862088 1862711 D cell wall hydrolase domain-containing protein 1862088..1862711 Roseobacter denitrificans OCh 114 4196771 YP_682244.1 CDS folB NC_008209.1 1862805 1863728 D dihydroneopterin aldolase 1862805..1863728 Roseobacter denitrificans OCh 114 4196772 YP_682245.1 CDS folP NC_008209.1 1863920 1864744 D dihydropteroate synthase 1863920..1864744 Roseobacter denitrificans OCh 114 4196773 YP_682246.1 CDS glmM NC_008209.1 1864737 1866086 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1864737..1866086 Roseobacter denitrificans OCh 114 4196774 YP_682247.1 CDS RD1_1953 NC_008209.1 1866288 1867208 R hypothetical protein complement(1866288..1867208) Roseobacter denitrificans OCh 114 4196775 YP_682248.1 CDS ilvC NC_008209.1 1867283 1868305 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1867283..1868305) Roseobacter denitrificans OCh 114 4196776 YP_682249.1 CDS RD1_1955 NC_008209.1 1868443 1868898 D AsnC family transcriptional regulator 1868443..1868898 Roseobacter denitrificans OCh 114 4196777 YP_682250.1 CDS RD1_1956 NC_008209.1 1868895 1869350 D AsnC family transcriptional regulator 1868895..1869350 Roseobacter denitrificans OCh 114 4196778 YP_682251.1 CDS RD1_1957 NC_008209.1 1869449 1870576 D aminotransferase family protein 1869449..1870576 Roseobacter denitrificans OCh 114 4196779 YP_682252.1 CDS RD1_1958 NC_008209.1 1870569 1871768 R 2-octaprenyl-6-methoxyphenyl hydroxylase complement(1870569..1871768) Roseobacter denitrificans OCh 114 4196780 YP_682253.1 CDS RD1_1959 NC_008209.1 1871830 1872078 R hypothetical protein complement(1871830..1872078) Roseobacter denitrificans OCh 114 4196781 YP_682254.1 CDS RD1_1960 NC_008209.1 1872159 1872803 R pyrimidine 5'-nucleotidase complement(1872159..1872803) Roseobacter denitrificans OCh 114 4196782 YP_682255.1 CDS RD1_1961 NC_008209.1 1872856 1873551 D GntR family transcriptional regulator 1872856..1873551 Roseobacter denitrificans OCh 114 4196783 YP_682256.1 CDS RD1_1962 NC_008209.1 1873650 1875557 R glycosyl transferase family protein complement(1873650..1875557) Roseobacter denitrificans OCh 114 4196784 YP_682257.1 CDS carA NC_008209.1 1875663 1876823 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1875663..1876823) Roseobacter denitrificans OCh 114 4196785 YP_682258.1 CDS RD1_1964 NC_008209.1 1877051 1877509 D GatB/Yqey family protein 1877051..1877509 Roseobacter denitrificans OCh 114 4196749 YP_682259.1 CDS RD1_1965 NC_008209.1 1877778 1878497 D hypothetical protein 1877778..1878497 Roseobacter denitrificans OCh 114 4196750 YP_682260.1 CDS RD1_1966 NC_008209.1 1878556 1879038 R hypothetical protein complement(1878556..1879038) Roseobacter denitrificans OCh 114 4196751 YP_682261.1 CDS ctaD NC_008209.1 1879336 1881006 R cytochrome c oxidase subunit I complement(1879336..1881006) Roseobacter denitrificans OCh 114 4196752 YP_682262.1 CDS RD1_1968 NC_008209.1 1881302 1881568 D sensory box protein 1881302..1881568 Roseobacter denitrificans OCh 114 4196753 YP_682263.1 CDS RD1_1969 NC_008209.1 1881543 1881857 D sensory box protein 1881543..1881857 Roseobacter denitrificans OCh 114 4196754 YP_682264.1 CDS lipB NC_008209.1 1881912 1882664 R lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase complement(1881912..1882664) Roseobacter denitrificans OCh 114 4196755 YP_682265.1 CDS RD1_1973 NC_008209.1 1883254 1885179 D ABC transporter ATP-binding protein 1883254..1885179 Roseobacter denitrificans OCh 114 4196758 YP_682266.1 CDS lcfA NC_008209.1 1885294 1887177 D activates fatty acids by binding to coenzyme A; AMP-binding protein 1885294..1887177 Roseobacter denitrificans OCh 114 4196759 YP_682267.1 CDS RD1_1975 NC_008209.1 1887222 1888058 R hypothetical protein complement(1887222..1888058) Roseobacter denitrificans OCh 114 4196760 YP_682268.1 CDS RD1_1976 NC_008209.1 1888202 1889839 R ABC transporter ATP-binding protein complement(1888202..1889839) Roseobacter denitrificans OCh 114 4196761 YP_682269.1 CDS RD1_1977 NC_008209.1 1889836 1890648 R ABC transporter permease complement(1889836..1890648) Roseobacter denitrificans OCh 114 4196762 YP_682270.1 CDS RD1_1978 NC_008209.1 1890645 1891601 R ABC transporter permease complement(1890645..1891601) Roseobacter denitrificans OCh 114 4196763 YP_682271.1 CDS RD1_1979 NC_008209.1 1891615 1893210 R ABC transporter substrate-binding protein complement(1891615..1893210) Roseobacter denitrificans OCh 114 4196764 YP_682272.1 CDS RD1_1980 NC_008209.1 1893328 1895319 R X-Pro dipeptidyl-peptidase complement(1893328..1895319) Roseobacter denitrificans OCh 114 4196765 YP_682273.1 CDS ttuD NC_008209.1 1895373 1896416 R hydroxypyruvate reductase complement(1895373..1896416) Roseobacter denitrificans OCh 114 4196766 YP_682274.1 CDS RD1_1982 NC_008209.1 1896516 1896962 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1896516..1896962) Roseobacter denitrificans OCh 114 4196730 YP_682275.1 CDS RD1_1984 NC_008209.1 1897006 1898112 R hypothetical protein complement(1897006..1898112) Roseobacter denitrificans OCh 114 4196731 YP_682276.1 CDS RD1_1985 NC_008209.1 1898109 1898534 R hypothetical protein complement(1898109..1898534) Roseobacter denitrificans OCh 114 4196732 YP_682277.1 CDS RD1_1986 NC_008209.1 1898622 1899758 R hypothetical protein complement(1898622..1899758) Roseobacter denitrificans OCh 114 4196733 YP_682278.1 CDS RD1_1987 NC_008209.1 1899786 1900730 R lipoprotein complement(1899786..1900730) Roseobacter denitrificans OCh 114 4196734 YP_682279.1 CDS telA NC_008209.1 1900737 1901933 R tellurite resistance protein TelA complement(1900737..1901933) Roseobacter denitrificans OCh 114 4196735 YP_682280.1 CDS RD1_1990 NC_008209.1 1901967 1902851 R hypothetical protein complement(1901967..1902851) Roseobacter denitrificans OCh 114 4196736 YP_682281.1 CDS RD1_1991 NC_008209.1 1902854 1902970 R hypothetical protein complement(1902854..1902970) Roseobacter denitrificans OCh 114 4196737 YP_682282.1 CDS RD1_1992 NC_008209.1 1903112 1903969 R RNA pseudouridylate synthase family protein complement(1903112..1903969) Roseobacter denitrificans OCh 114 4196738 YP_682283.1 CDS RD1_1993 NC_008209.1 1904015 1904482 D cytidine and deoxycytidylate deaminase family protein 1904015..1904482 Roseobacter denitrificans OCh 114 4196739 YP_682284.1 CDS RD1_1994 NC_008209.1 1904490 1905179 R metallo-beta-lactamase family protein complement(1904490..1905179) Roseobacter denitrificans OCh 114 4196740 YP_682285.1 CDS RD1_1995 NC_008209.1 1905278 1905937 D hypothetical protein 1905278..1905937 Roseobacter denitrificans OCh 114 4196741 YP_682286.1 CDS RD1_1996 NC_008209.1 1905903 1905998 R hypothetical protein complement(1905903..1905998) Roseobacter denitrificans OCh 114 4196742 YP_682287.1 CDS RD1_1997 NC_008209.1 1906031 1906285 R ribosomal protein L33-related protein complement(1906031..1906285) Roseobacter denitrificans OCh 114 4196743 YP_682288.1 CDS RD1_1998 NC_008209.1 1906800 1907474 R N-acetylmuramoyl-L-alanine amidase complement(1906800..1907474) Roseobacter denitrificans OCh 114 4196744 YP_682289.1 CDS RD1_1999 NC_008209.1 1907435 1908127 R hypothetical protein complement(1907435..1908127) Roseobacter denitrificans OCh 114 4196745 YP_682290.1 CDS gatA NC_008209.1 1908170 1909657 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1908170..1909657) Roseobacter denitrificans OCh 114 4196746 YP_682291.1 CDS gatC NC_008209.1 1909657 1909944 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1909657..1909944) Roseobacter denitrificans OCh 114 4196747 YP_682292.1 CDS RD1_2002 NC_008209.1 1910260 1910997 R hypothetical protein complement(1910260..1910997) Roseobacter denitrificans OCh 114 4196748 YP_682293.1 CDS RD1_2003 NC_008209.1 1911173 1911433 R hypothetical protein complement(1911173..1911433) Roseobacter denitrificans OCh 114 4196710 YP_682294.1 CDS RD1_2004 NC_008209.1 1911511 1912386 D LysR family transcriptional regulator 1911511..1912386 Roseobacter denitrificans OCh 114 4196711 YP_682295.1 CDS phrR NC_008209.1 1912867 1913244 D Cro/CI family transcriptional regulator 1912867..1913244 Roseobacter denitrificans OCh 114 4196712 YP_682296.1 CDS RD1_2006 NC_008209.1 1913306 1914130 D inositol monophosphatase 1913306..1914130 Roseobacter denitrificans OCh 114 4196713 YP_682297.1 CDS atzB NC_008209.1 1914127 1915467 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 1914127..1915467 Roseobacter denitrificans OCh 114 4196714 YP_682298.1 CDS guaD NC_008209.1 1915518 1916825 R Catalyzes the deamination of guanine; guanine deaminase complement(1915518..1916825) Roseobacter denitrificans OCh 114 4196715 YP_682299.1 CDS mgtE NC_008209.1 1916933 1918324 D magnesium transporter 1916933..1918324 Roseobacter denitrificans OCh 114 4196716 YP_682300.1 CDS RD1_2010 NC_008209.1 1918321 1918893 D 5-formyltetrahydrofolate cyclo-ligase 1918321..1918893 Roseobacter denitrificans OCh 114 4196717 YP_682301.1 CDS RD1_2012 NC_008209.1 1919056 1919868 D hypothetical protein 1919056..1919868 Roseobacter denitrificans OCh 114 4196718 YP_682302.1 CDS RD1_2013 NC_008209.1 1919865 1920770 D hypothetical protein 1919865..1920770 Roseobacter denitrificans OCh 114 4196719 YP_682303.1 CDS trkA NC_008209.1 1920822 1922603 D Trk system potassium uptake protein trkA 1920822..1922603 Roseobacter denitrificans OCh 114 4196720 YP_682304.1 CDS RD1_2015 NC_008209.1 1922634 1923266 R hypothetical protein complement(1922634..1923266) Roseobacter denitrificans OCh 114 4196721 YP_682305.1 CDS RD1_2016 NC_008209.1 1923336 1925108 R TrkA domain-containing protein complement(1923336..1925108) Roseobacter denitrificans OCh 114 4196722 YP_682306.1 CDS RD1_2017 NC_008209.1 1925120 1925218 R hypothetical protein complement(1925120..1925218) Roseobacter denitrificans OCh 114 4196723 YP_682307.1 CDS RD1_2018 NC_008209.1 1925358 1926098 D hypothetical protein 1925358..1926098 Roseobacter denitrificans OCh 114 4196724 YP_682308.1 CDS RD1_2019 NC_008209.1 1926148 1926402 R hypothetical protein complement(1926148..1926402) Roseobacter denitrificans OCh 114 4196725 YP_682309.1 CDS RD1_2020 NC_008209.1 1926574 1927479 D hypothetical protein 1926574..1927479 Roseobacter denitrificans OCh 114 4196726 YP_682310.1 CDS betI NC_008209.1 1927554 1928129 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 1927554..1928129 Roseobacter denitrificans OCh 114 4196727 YP_682311.1 CDS betC-1 NC_008209.1 1928126 1929634 D choline sulfatase 1928126..1929634 Roseobacter denitrificans OCh 114 4196728 YP_682312.1 CDS betB NC_008209.1 1929674 1931131 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1929674..1931131 Roseobacter denitrificans OCh 114 4196729 YP_682313.1 CDS betA NC_008209.1 1931387 1933045 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 1931387..1933045 Roseobacter denitrificans OCh 114 4196691 YP_682314.1 CDS RD1_2025 NC_008209.1 1933105 1933776 D succinoglycan biosynthesis protein 1933105..1933776 Roseobacter denitrificans OCh 114 4196692 YP_682315.1 CDS RD1_2026 NC_008209.1 1933779 1935206 R DNA-binding protein complement(1933779..1935206) Roseobacter denitrificans OCh 114 4196693 YP_682316.1 CDS RD1_2027 NC_008209.1 1935291 1936556 R MFS protein complement(1935291..1936556) Roseobacter denitrificans OCh 114 4196694 YP_682317.1 CDS pccB NC_008209.1 1936990 1938522 D propionyl-CoA carboxylase subunit beta 1936990..1938522 Roseobacter denitrificans OCh 114 4196695 YP_682318.1 CDS RD1_2029 NC_008209.1 1938631 1939023 D hypothetical protein 1938631..1939023 Roseobacter denitrificans OCh 114 4196696 YP_682319.1 CDS RD1_2030 NC_008209.1 1939103 1939450 D hypothetical protein 1939103..1939450 Roseobacter denitrificans OCh 114 4196697 YP_682320.1 CDS RD1_2031 NC_008209.1 1939764 1939970 D hypothetical protein 1939764..1939970 Roseobacter denitrificans OCh 114 4196698 YP_682321.1 CDS pccA NC_008209.1 1940087 1942132 D propionyl-CoA carboxylase subunit alpha 1940087..1942132 Roseobacter denitrificans OCh 114 4196699 YP_682322.1 CDS RD1_2033 NC_008209.1 1942185 1942640 R hypothetical protein complement(1942185..1942640) Roseobacter denitrificans OCh 114 4196700 YP_682323.1 CDS RD1_2034 NC_008209.1 1942806 1943729 D hypothetical protein 1942806..1943729 Roseobacter denitrificans OCh 114 4196701 YP_682324.1 CDS mutA NC_008209.1 1943692 1945821 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1943692..1945821 Roseobacter denitrificans OCh 114 4196702 YP_682325.1 CDS RD1_2036 NC_008209.1 1945818 1946435 D hypothetical protein 1945818..1946435 Roseobacter denitrificans OCh 114 4196703 YP_682326.1 CDS RD1_2037 NC_008209.1 1946432 1946908 D acetyltransferase 1946432..1946908 Roseobacter denitrificans OCh 114 4196704 YP_682327.1 CDS djlA NC_008209.1 1946960 1947640 D DnaJ-like protein 1946960..1947640 Roseobacter denitrificans OCh 114 4196705 YP_682328.1 CDS RD1_2040 NC_008209.1 1947742 1948071 D hypothetical protein 1947742..1948071 Roseobacter denitrificans OCh 114 4196706 YP_682329.1 CDS RD1_2041 NC_008209.1 1948164 1949726 R Ppx/GppA phosphatase complement(1948164..1949726) Roseobacter denitrificans OCh 114 4196707 YP_682330.1 CDS ppk NC_008209.1 1949833 1952058 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1949833..1952058) Roseobacter denitrificans OCh 114 4196708 YP_682331.1 CDS RD1_2043 NC_008209.1 1952048 1952731 R hypothetical protein complement(1952048..1952731) Roseobacter denitrificans OCh 114 4196709 YP_682332.1 CDS RD1_2044 NC_008209.1 1952733 1953800 R hypothetical protein complement(1952733..1953800) Roseobacter denitrificans OCh 114 4196671 YP_682333.1 CDS proS NC_008209.1 1954002 1955357 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1954002..1955357 Roseobacter denitrificans OCh 114 4196672 YP_682334.1 CDS RD1_2046 NC_008209.1 1955445 1955942 D hypothetical protein 1955445..1955942 Roseobacter denitrificans OCh 114 4196673 YP_682335.1 CDS RD1_2047 NC_008209.1 1955995 1957281 D lipoprotein releasing system transmembrane protein 1955995..1957281 Roseobacter denitrificans OCh 114 4196674 YP_682336.1 CDS lolD NC_008209.1 1957274 1957957 D ABC transporter ATP-binding protein 1957274..1957957 Roseobacter denitrificans OCh 114 4196675 YP_682337.1 CDS RD1_2049 NC_008209.1 1958004 1958999 D malate/L-lactate dehydrogenase 1958004..1958999 Roseobacter denitrificans OCh 114 4196676 YP_682338.1 CDS RD1_2050 NC_008209.1 1958983 1959426 R hypothetical protein complement(1958983..1959426) Roseobacter denitrificans OCh 114 4196677 YP_682339.1 CDS RD1_2051 NC_008209.1 1959552 1959932 D hypothetical protein 1959552..1959932 Roseobacter denitrificans OCh 114 4196678 YP_682340.1 CDS RD1_2052 NC_008209.1 1959933 1960559 R hypothetical protein complement(1959933..1960559) Roseobacter denitrificans OCh 114 4196679 YP_682341.1 CDS RD1_2053 NC_008209.1 1960633 1960746 D hypothetical protein 1960633..1960746 Roseobacter denitrificans OCh 114 4196680 YP_682342.1 CDS RD1_2054 NC_008209.1 1960760 1961155 D cytochrome c family protein 1960760..1961155 Roseobacter denitrificans OCh 114 4196681 YP_682343.1 CDS RD1_2055 NC_008209.1 1961515 1961799 D hypothetical protein 1961515..1961799 Roseobacter denitrificans OCh 114 4196682 YP_682344.1 CDS RD1_2056 NC_008209.1 1962049 1962768 R hypothetical protein complement(1962049..1962768) Roseobacter denitrificans OCh 114 4196683 YP_682345.1 CDS parE NC_008209.1 1962765 1964813 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1962765..1964813) Roseobacter denitrificans OCh 114 4196684 YP_682346.1 CDS RD1_2058 NC_008209.1 1964810 1965001 R hypothetical protein complement(1964810..1965001) Roseobacter denitrificans OCh 114 4196685 YP_682347.1 CDS RD1_2059 NC_008209.1 1965177 1966460 R hypothetical protein complement(1965177..1966460) Roseobacter denitrificans OCh 114 4196686 YP_682348.1 CDS RD1_2060 NC_008209.1 1966561 1968069 D MATE efflux family protein 1966561..1968069 Roseobacter denitrificans OCh 114 4196687 YP_682349.1 CDS RD1_2061 NC_008209.1 1968226 1969008 R n-formylglutamate amidohydrolase complement(1968226..1969008) Roseobacter denitrificans OCh 114 4196688 YP_682350.1 CDS RD1_2062 NC_008209.1 1969122 1969958 R hypothetical protein complement(1969122..1969958) Roseobacter denitrificans OCh 114 4196689 YP_682351.1 CDS RD1_2063 NC_008209.1 1969975 1971168 R oxidoreductase complement(1969975..1971168) Roseobacter denitrificans OCh 114 4196690 YP_682352.1 CDS RD1_2064 NC_008209.1 1971252 1972271 R phosphotransferase complement(1971252..1972271) Roseobacter denitrificans OCh 114 4196652 YP_682353.1 CDS RD1_2065 NC_008209.1 1972370 1973605 D acyl-CoA dehydrogenase 1972370..1973605 Roseobacter denitrificans OCh 114 4196653 YP_682354.1 CDS RD1_2066 NC_008209.1 1973795 1973893 D hypothetical protein 1973795..1973893 Roseobacter denitrificans OCh 114 4196654 YP_682355.1 CDS RD1_2067 NC_008209.1 1973931 1974824 D renal dipeptidase family protein 1973931..1974824 Roseobacter denitrificans OCh 114 4196655 YP_682356.1 CDS RD1_2068 NC_008209.1 1974821 1976479 D hypothetical protein 1974821..1976479 Roseobacter denitrificans OCh 114 4196656 YP_682357.1 CDS RD1_2069 NC_008209.1 1976455 1976976 D hypothetical protein 1976455..1976976 Roseobacter denitrificans OCh 114 4196657 YP_682358.1 CDS truA NC_008209.1 1976973 1977755 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1976973..1977755) Roseobacter denitrificans OCh 114 4196658 YP_682359.1 CDS RD1_2071 NC_008209.1 1977869 1979284 D hypothetical protein 1977869..1979284 Roseobacter denitrificans OCh 114 4196659 YP_682360.1 CDS RD1_2072 NC_008209.1 1979281 1979766 D acetyltransferase 1979281..1979766 Roseobacter denitrificans OCh 114 4196660 YP_682361.1 CDS RD1_2073 NC_008209.1 1979766 1980761 D hypothetical protein 1979766..1980761 Roseobacter denitrificans OCh 114 4196661 YP_682362.1 CDS ileS NC_008209.1 1980967 1983960 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1980967..1983960 Roseobacter denitrificans OCh 114 4196662 YP_682363.1 CDS ogt NC_008209.1 1984032 1984487 D methylated-DNA--protein-cysteine methyltransferase 1984032..1984487 Roseobacter denitrificans OCh 114 4196663 YP_682364.1 CDS RD1_2076 NC_008209.1 1984579 1984674 D hypothetical protein 1984579..1984674 Roseobacter denitrificans OCh 114 4196664 YP_682365.1 CDS pcs NC_008209.1 1984649 1985347 R phosphatidylcholine synthase complement(1984649..1985347) Roseobacter denitrificans OCh 114 4196665 YP_682366.1 CDS xerC NC_008209.1 1985421 1986341 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1985421..1986341) Roseobacter denitrificans OCh 114 4196666 YP_682367.1 CDS RD1_2079 NC_008209.1 1986338 1987045 R hypothetical protein complement(1986338..1987045) Roseobacter denitrificans OCh 114 4196667 YP_682368.1 CDS tal NC_008209.1 1987190 1987843 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(1987190..1987843) Roseobacter denitrificans OCh 114 4196668 YP_682369.1 CDS priA NC_008209.1 1988001 1990163 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1988001..1990163 Roseobacter denitrificans OCh 114 4196669 YP_682370.1 CDS RD1_2082 NC_008209.1 1990255 1991487 D MFS protein, permease component 1990255..1991487 Roseobacter denitrificans OCh 114 4196670 YP_682371.1 CDS RD1_2083 NC_008209.1 1991517 1992875 D MATE efflux family protein 1991517..1992875 Roseobacter denitrificans OCh 114 4196632 YP_682372.1 CDS prmA NC_008209.1 1992875 1993747 D 50S ribosomal protein L11 methyltransferase 1992875..1993747 Roseobacter denitrificans OCh 114 4196633 YP_682373.1 CDS RD1_2085 NC_008209.1 1993844 1994188 D hypothetical protein 1993844..1994188 Roseobacter denitrificans OCh 114 4196634 YP_682374.1 CDS RD1_2086 NC_008209.1 1994308 1994526 R hypothetical protein complement(1994308..1994526) Roseobacter denitrificans OCh 114 4196635 YP_682375.1 CDS ruvC NC_008209.1 1994802 1995365 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1994802..1995365 Roseobacter denitrificans OCh 114 4196636 YP_682376.1 CDS ruvA NC_008209.1 1995362 1996018 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1995362..1996018 Roseobacter denitrificans OCh 114 4196637 YP_682377.1 CDS ruvB NC_008209.1 1996043 1997065 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1996043..1997065 Roseobacter denitrificans OCh 114 4196638 YP_682378.1 CDS RD1_2091 NC_008209.1 1997108 1997734 D hypothetical protein 1997108..1997734 Roseobacter denitrificans OCh 114 4196639 YP_682379.1 CDS RD1_2092 NC_008209.1 1997731 1998129 D thioesterase family protein 1997731..1998129 Roseobacter denitrificans OCh 114 4196640 YP_682380.1 CDS tolQ NC_008209.1 1998228 1998923 D proton transporter TolQ 1998228..1998923 Roseobacter denitrificans OCh 114 4196641 YP_682381.1 CDS RD1_2095 NC_008209.1 1998927 1999421 D ExbD/TolR family biopolymer transport protein 1998927..1999421 Roseobacter denitrificans OCh 114 4196642 YP_682382.1 CDS RD1_2096 NC_008209.1 1999484 2000524 D hypothetical protein 1999484..2000524 Roseobacter denitrificans OCh 114 4196643 YP_682383.1 CDS tolB NC_008209.1 2000521 2001852 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2000521..2001852 Roseobacter denitrificans OCh 114 4196644 YP_682384.1 CDS pal NC_008209.1 2001942 2002454 D peptidoglycan-associated lipoprotein 2001942..2002454 Roseobacter denitrificans OCh 114 4196645 YP_682385.1 CDS RD1_2099 NC_008209.1 2002459 2003304 D hypothetical protein 2002459..2003304 Roseobacter denitrificans OCh 114 4196646 YP_682386.1 CDS RD1_2100 NC_008209.1 2003311 2004555 D hypothetical protein 2003311..2004555 Roseobacter denitrificans OCh 114 4196647 YP_682387.1 CDS ftsH NC_008209.1 2004636 2006561 D cell division protein FtsH 2004636..2006561 Roseobacter denitrificans OCh 114 4196648 YP_682388.1 CDS RD1_2103 NC_008209.1 2007066 2007677 D MOSC domain-containing protein 2007066..2007677 Roseobacter denitrificans OCh 114 4196649 YP_682389.1 CDS RD1_2104 NC_008209.1 2008142 2008612 D hypothetical protein 2008142..2008612 Roseobacter denitrificans OCh 114 4196650 YP_682390.1 CDS folD NC_008209.1 2008627 2009529 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2008627..2009529 Roseobacter denitrificans OCh 114 4196651 YP_682391.1 CDS RD1_2106 NC_008209.1 2009526 2009963 R hypothetical protein complement(2009526..2009963) Roseobacter denitrificans OCh 114 4196613 YP_682392.1 CDS RD1_2107 NC_008209.1 2009973 2010635 R hypothetical protein complement(2009973..2010635) Roseobacter denitrificans OCh 114 4196614 YP_682393.1 CDS RD1_2108 NC_008209.1 2010675 2013128 R DEAD/DEAH box helicase complement(2010675..2013128) Roseobacter denitrificans OCh 114 4196615 YP_682394.1 CDS RD1_2109 NC_008209.1 2013185 2014492 R hypothetical protein complement(2013185..2014492) Roseobacter denitrificans OCh 114 4196616 YP_682395.1 CDS RD1_2110 NC_008209.1 2014481 2014660 D hypothetical protein 2014481..2014660 Roseobacter denitrificans OCh 114 4196617 YP_682396.1 CDS RD1_2111 NC_008209.1 2015078 2015935 R hypothetical protein complement(2015078..2015935) Roseobacter denitrificans OCh 114 4196618 YP_682397.1 CDS RD1_2112 NC_008209.1 2015966 2016559 R hypothetical protein complement(2015966..2016559) Roseobacter denitrificans OCh 114 4196619 YP_682398.1 CDS RD1_2113 NC_008209.1 2016556 2017623 R TadC family type II/IV secretion system protein complement(2016556..2017623) Roseobacter denitrificans OCh 114 4196620 YP_682399.1 CDS RD1_2115 NC_008209.1 2017551 2018513 R type II secretion system protein complement(2017551..2018513) Roseobacter denitrificans OCh 114 4196621 YP_682400.1 CDS RD1_2116 NC_008209.1 2018544 2020001 R type II/IV secretion system protein complement(2018544..2020001) Roseobacter denitrificans OCh 114 4196622 YP_682401.1 CDS RD1_2117 NC_008209.1 2020021 2021256 R hypothetical protein complement(2020021..2021256) Roseobacter denitrificans OCh 114 4196623 YP_682402.1 CDS RD1_2119 NC_008209.1 2021543 2021926 R hypothetical protein complement(2021543..2021926) Roseobacter denitrificans OCh 114 4196624 YP_682403.1 CDS RD1_2120 NC_008209.1 2021931 2023322 R type II/III secretion system protein complement(2021931..2023322) Roseobacter denitrificans OCh 114 4196625 YP_682404.1 CDS RD1_2121 NC_008209.1 2023337 2023471 D hypothetical protein 2023337..2023471 Roseobacter denitrificans OCh 114 4196626 YP_682405.1 CDS RD1_2122 NC_008209.1 2023515 2024363 R pilus assembly domain-containing protein complement(2023515..2024363) Roseobacter denitrificans OCh 114 4196627 YP_682406.1 CDS RD1_2124 NC_008209.1 2024527 2024736 R hypothetical protein complement(2024527..2024736) Roseobacter denitrificans OCh 114 4196628 YP_682407.1 CDS RD1_2125 NC_008209.1 2024812 2024934 D hypothetical protein 2024812..2024934 Roseobacter denitrificans OCh 114 4196629 YP_682408.1 CDS RD1_2126 NC_008209.1 2024835 2025131 R hypothetical protein complement(2024835..2025131) Roseobacter denitrificans OCh 114 4196630 YP_682409.1 CDS RD1_2127 NC_008209.1 2025481 2026308 D Slt family transglycosylase 2025481..2026308 Roseobacter denitrificans OCh 114 4196631 YP_682410.1 CDS dxnH NC_008209.1 2026362 2026988 R 3-oxoadipate CoA-succinyl transferase subunit beta complement(2026362..2026988) Roseobacter denitrificans OCh 114 4196593 YP_682411.1 CDS RD1_2129 NC_008209.1 2027001 2028053 R sensory box histidine kinase complement(2027001..2028053) Roseobacter denitrificans OCh 114 4196594 YP_682412.1 CDS dxnG NC_008209.1 2028064 2028759 R 3-oxoadipate CoA-succinyl transferase subunit alpha complement(2028064..2028759) Roseobacter denitrificans OCh 114 4196595 YP_682413.1 CDS topA NC_008209.1 2028915 2031551 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2028915..2031551) Roseobacter denitrificans OCh 114 4196596 YP_682414.1 CDS dprA NC_008209.1 2031812 2032981 R DNA processing protein DprA complement(2031812..2032981) Roseobacter denitrificans OCh 114 4196597 YP_682415.1 CDS tldD NC_008209.1 2033079 2034500 R TldD protein complement(2033079..2034500) Roseobacter denitrificans OCh 114 4196598 YP_682416.1 CDS RD1_2134 NC_008209.1 2034521 2034691 D hypothetical protein 2034521..2034691 Roseobacter denitrificans OCh 114 4196599 YP_682417.1 CDS ctaC NC_008209.1 2034688 2035602 D cytochrome c oxidase subunit II 2034688..2035602 Roseobacter denitrificans OCh 114 4196600 YP_682418.1 CDS ctaB NC_008209.1 2035664 2036608 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2035664..2036608 Roseobacter denitrificans OCh 114 4196601 YP_682419.1 CDS RD1_2137 NC_008209.1 2036612 2036776 D hypothetical protein 2036612..2036776 Roseobacter denitrificans OCh 114 4196602 YP_682420.1 CDS ctaG NC_008209.1 2036776 2037360 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 2036776..2037360 Roseobacter denitrificans OCh 114 4196603 YP_682421.1 CDS ctaE NC_008209.1 2037386 2038207 D cytochrome c oxidase subunit III 2037386..2038207 Roseobacter denitrificans OCh 114 4196604 YP_682422.1 CDS surF NC_008209.1 2038279 2038959 D SURF1 family protein 2038279..2038959 Roseobacter denitrificans OCh 114 4196605 YP_682423.1 CDS thrC NC_008209.1 2038965 2040347 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2038965..2040347 Roseobacter denitrificans OCh 114 4196606 YP_682424.1 CDS mpp NC_008209.1 2040350 2041612 D M16 family peptidase 2040350..2041612 Roseobacter denitrificans OCh 114 4196607 YP_682425.1 CDS RD1_2143 NC_008209.1 2041609 2042196 D acetyltransferase 2041609..2042196 Roseobacter denitrificans OCh 114 4196608 YP_682426.1 CDS RD1_2144 NC_008209.1 2042316 2043137 D hypothetical protein 2042316..2043137 Roseobacter denitrificans OCh 114 4196609 YP_682427.1 CDS RD1_2145 NC_008209.1 2043182 2044618 D oxidoreductase 2043182..2044618 Roseobacter denitrificans OCh 114 4196610 YP_682428.1 CDS RD1_2147 NC_008209.1 2044702 2045166 D hypothetical protein 2044702..2045166 Roseobacter denitrificans OCh 114 4196611 YP_682429.1 CDS apt NC_008209.1 2045167 2045697 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2045167..2045697) Roseobacter denitrificans OCh 114 4196612 YP_682430.1 CDS RD1_2149 NC_008209.1 2045712 2046332 R LysE family protein complement(2045712..2046332) Roseobacter denitrificans OCh 114 4196574 YP_682431.1 CDS RD1_2150 NC_008209.1 2046350 2047222 R Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase complement(2046350..2047222) Roseobacter denitrificans OCh 114 4196575 YP_682432.1 CDS RD1_2151 NC_008209.1 2047484 2049112 D sulfate transporter family protein 2047484..2049112 Roseobacter denitrificans OCh 114 4196576 YP_682433.1 CDS RD1_2152 NC_008209.1 2049211 2049816 R hypothetical protein complement(2049211..2049816) Roseobacter denitrificans OCh 114 4196577 YP_682434.1 CDS RD1_2153 NC_008209.1 2049910 2050401 D acetyltransferase 2049910..2050401 Roseobacter denitrificans OCh 114 4196578 YP_682435.1 CDS RD1_2154 NC_008209.1 2050444 2051205 D hypothetical protein 2050444..2051205 Roseobacter denitrificans OCh 114 4196579 YP_682436.1 CDS RD1_2155 NC_008209.1 2051361 2051822 D NUDIX domain-containing protein 2051361..2051822 Roseobacter denitrificans OCh 114 4196580 YP_682437.1 CDS RD1_2156 NC_008209.1 2051894 2052319 D hypothetical protein 2051894..2052319 Roseobacter denitrificans OCh 114 4196581 YP_682438.1 CDS RD1_2157 NC_008209.1 2052577 2053815 D aspartate kinase 2052577..2053815 Roseobacter denitrificans OCh 114 4196582 YP_682439.1 CDS ptsP NC_008209.1 2053861 2056104 D phosphoenolpyruvate-protein phosphotransferase 2053861..2056104 Roseobacter denitrificans OCh 114 4196583 YP_682440.1 CDS RD1_2159 NC_008209.1 2056129 2057226 D hypothetical protein 2056129..2057226 Roseobacter denitrificans OCh 114 4196584 YP_682441.1 CDS RD1_2160 NC_008209.1 2057223 2057624 R hypothetical protein complement(2057223..2057624) Roseobacter denitrificans OCh 114 4196585 YP_682442.1 CDS mcp NC_008209.1 2057832 2060390 R methyl-accepting chemotaxis protein complement(2057832..2060390) Roseobacter denitrificans OCh 114 4196586 YP_682443.1 CDS RD1_2162 NC_008209.1 2060617 2061324 R ABC transporter ATP-binding protein complement(2060617..2061324) Roseobacter denitrificans OCh 114 4196587 YP_682444.1 CDS RD1_2163 NC_008209.1 2061314 2062054 R ABC transporter ATP-binding protein complement(2061314..2062054) Roseobacter denitrificans OCh 114 4196588 YP_682445.1 CDS RD1_2164 NC_008209.1 2062051 2063307 R branched-chain amino acid ABC transporter permease complement(2062051..2063307) Roseobacter denitrificans OCh 114 4196589 YP_682446.1 CDS RD1_2165 NC_008209.1 2063311 2065320 R branched-chain amino acid ABC transporter permease complement(2063311..2065320) Roseobacter denitrificans OCh 114 4196590 YP_682447.1 CDS RD1_2166 NC_008209.1 2065347 2066690 R ABC transporter substrate-binding protein complement(2065347..2066690) Roseobacter denitrificans OCh 114 4196591 YP_682448.1 CDS RD1_2167 NC_008209.1 2066696 2066788 R hypothetical protein complement(2066696..2066788) Roseobacter denitrificans OCh 114 4196592 YP_682449.1 CDS RD1_2168 NC_008209.1 2066909 2067343 R hypothetical protein complement(2066909..2067343) Roseobacter denitrificans OCh 114 4196554 YP_682450.1 CDS RD1_2169 NC_008209.1 2067427 2067522 R hypothetical protein complement(2067427..2067522) Roseobacter denitrificans OCh 114 4196555 YP_682451.1 CDS RD1_2170 NC_008209.1 2067493 2067648 D hypothetical protein 2067493..2067648 Roseobacter denitrificans OCh 114 4196556 YP_682452.1 CDS gbd NC_008209.1 2067645 2068790 R NAD-dependent 4-hydroxybutyrate dehydrogenase complement(2067645..2068790) Roseobacter denitrificans OCh 114 4196557 YP_682453.1 CDS RD1_2172 NC_008209.1 2068795 2070165 R aldehyde dehydrogenase complement(2068795..2070165) Roseobacter denitrificans OCh 114 4196558 YP_682454.1 CDS ipuC NC_008209.1 2070169 2071533 R gamma-glutamylisopropylamide synthetase complement(2070169..2071533) Roseobacter denitrificans OCh 114 4196559 YP_682455.1 CDS RD1_2174 NC_008209.1 2071596 2072627 R mannitol ABC transporter substrate-binding protein complement(2071596..2072627) Roseobacter denitrificans OCh 114 4196560 YP_682456.1 CDS RD1_2175 NC_008209.1 2072676 2074055 R TRAP dicarboxylate transporter subunit DctM complement(2072676..2074055) Roseobacter denitrificans OCh 114 4196561 YP_682457.1 CDS RD1_2176 NC_008209.1 2074001 2074558 R hypothetical protein complement(2074001..2074558) Roseobacter denitrificans OCh 114 4196562 YP_682458.1 CDS RD1_2177 NC_008209.1 2074558 2075322 R hypothetical protein complement(2074558..2075322) Roseobacter denitrificans OCh 114 4196563 YP_682459.1 CDS RD1_2178 NC_008209.1 2075437 2076309 D RpiR family transcription regulator 2075437..2076309 Roseobacter denitrificans OCh 114 4196564 YP_682460.1 CDS ggtA NC_008209.1 2076320 2077915 R gamma-glutamyltranspeptidase complement(2076320..2077915) Roseobacter denitrificans OCh 114 4196565 YP_682461.1 CDS cobQ NC_008209.1 2078032 2079477 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2078032..2079477) Roseobacter denitrificans OCh 114 4196566 YP_682462.1 CDS cobO NC_008209.1 2079488 2080096 R cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2079488..2080096) Roseobacter denitrificans OCh 114 4196567 YP_682463.1 CDS RD1_2182 NC_008209.1 2080294 2081103 D amino acid ABC transporter substrate-binding protein 2080294..2081103 Roseobacter denitrificans OCh 114 4196568 YP_682464.1 CDS RD1_2183 NC_008209.1 2081111 2081920 D glutamine ABC transporter permease 2081111..2081920 Roseobacter denitrificans OCh 114 4196569 YP_682465.1 CDS RD1_2184 NC_008209.1 2081907 2082644 D amino acid ABC transporter ATP-binding protein 2081907..2082644 Roseobacter denitrificans OCh 114 4196570 YP_682466.1 CDS dctP NC_008209.1 2082753 2083742 D C4-dicarboxylate ABC transporter substrate-binding protein 2082753..2083742 Roseobacter denitrificans OCh 114 4196571 YP_682467.1 CDS RD1_2186 NC_008209.1 2083777 2084298 D TRAP transporter DctQ-like subunit 2083777..2084298 Roseobacter denitrificans OCh 114 4196572 YP_682468.1 CDS RD1_2187 NC_008209.1 2084295 2085569 D TRAP C4-dicarboxylate transport system permease DctM 2084295..2085569 Roseobacter denitrificans OCh 114 4196573 YP_682469.1 CDS RD1_2188 NC_008209.1 2085574 2086449 D carboxyvinyl-carboxyphosphonate phosphorylmutase 2085574..2086449 Roseobacter denitrificans OCh 114 4196535 YP_682470.1 CDS RD1_2189 NC_008209.1 2086478 2088523 R oxidoreductase complement(2086478..2088523) Roseobacter denitrificans OCh 114 4196536 YP_682471.1 CDS RD1_2190 NC_008209.1 2088684 2090255 R oxidoreductase complement(2088684..2090255) Roseobacter denitrificans OCh 114 4196537 YP_682472.1 CDS RD1_2191 NC_008209.1 2090271 2090795 R hypothetical protein complement(2090271..2090795) Roseobacter denitrificans OCh 114 4196538 YP_682473.1 CDS glo NC_008209.1 2090813 2091208 R lactoylglutathione lyase complement(2090813..2091208) Roseobacter denitrificans OCh 114 4196539 YP_682474.1 CDS RD1_2193 NC_008209.1 2091316 2091609 R hypothetical protein complement(2091316..2091609) Roseobacter denitrificans OCh 114 4196540 YP_682475.1 CDS oxyR NC_008209.1 2091815 2092756 R oxidative stress transcription regulator, oxyR complement(2091815..2092756) Roseobacter denitrificans OCh 114 4196541 YP_682476.1 CDS katG NC_008209.1 2092862 2095042 D catalase-peroxidase 2092862..2095042 Roseobacter denitrificans OCh 114 4196542 YP_682477.1 CDS RD1_2196 NC_008209.1 2095099 2095932 R universal stress family protein complement(2095099..2095932) Roseobacter denitrificans OCh 114 4196543 YP_682478.1 CDS panE NC_008209.1 2095945 2096922 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2095945..2096922) Roseobacter denitrificans OCh 114 4196544 YP_682479.1 CDS RD1_2199 NC_008209.1 2097038 2098561 R hypothetical protein complement(2097038..2098561) Roseobacter denitrificans OCh 114 4196545 YP_682480.1 CDS RD1_2200 NC_008209.1 2098599 2100107 R hypothetical protein complement(2098599..2100107) Roseobacter denitrificans OCh 114 4196546 YP_682481.1 CDS RD1_2201 NC_008209.1 2100120 2100611 R hypothetical protein complement(2100120..2100611) Roseobacter denitrificans OCh 114 4196547 YP_682482.1 CDS RD1_2202 NC_008209.1 2100695 2101672 R hypothetical protein complement(2100695..2101672) Roseobacter denitrificans OCh 114 4196548 YP_682483.1 CDS RD1_2203 NC_008209.1 2101849 2103255 D transcriptional regulator 2101849..2103255 Roseobacter denitrificans OCh 114 4196549 YP_682484.1 CDS icd NC_008209.1 2103330 2105552 R isocitrate dehydrogenase complement(2103330..2105552) Roseobacter denitrificans OCh 114 4196550 YP_682485.1 CDS RD1_2207 NC_008209.1 2108829 2109968 R hypothetical protein complement(2108829..2109968) Roseobacter denitrificans OCh 114 4196552 YP_682486.1 CDS RD1_2208 NC_008209.1 2110056 2110676 D TetR family transcriptional regulator 2110056..2110676 Roseobacter denitrificans OCh 114 4196553 YP_682487.1 CDS RD1_2209 NC_008209.1 2110796 2111575 D myo-inositol-1-monophosphotase 2110796..2111575 Roseobacter denitrificans OCh 114 4196516 YP_682488.1 CDS RD1_2210 NC_008209.1 2111702 2112328 R hypothetical protein complement(2111702..2112328) Roseobacter denitrificans OCh 114 4196517 YP_682489.1 CDS RD1_2211 NC_008209.1 2112318 2113091 R sugar ABC transporter ATP-binding protein complement(2112318..2113091) Roseobacter denitrificans OCh 114 4196518 YP_682490.1 CDS rbcS NC_008209.1 2113091 2114152 R ribose ABC transporter permease complement(2113091..2114152) Roseobacter denitrificans OCh 114 4196519 YP_682491.1 CDS RD1_2213 NC_008209.1 2114263 2115279 R sugar ABC transporter protein complement(2114263..2115279) Roseobacter denitrificans OCh 114 4196520 YP_682492.1 CDS frcR NC_008209.1 2115428 2116636 D ROK family transcriptional regulator 2115428..2116636 Roseobacter denitrificans OCh 114 4196521 YP_682493.1 CDS RD1_2215 NC_008209.1 2116912 2117511 D hypothetical protein 2116912..2117511 Roseobacter denitrificans OCh 114 4196522 YP_682494.1 CDS RD1_2216 NC_008209.1 2117615 2117962 R hypothetical protein complement(2117615..2117962) Roseobacter denitrificans OCh 114 4196523 YP_682495.1 CDS RD1_2217 NC_008209.1 2118094 2118237 D hypothetical protein 2118094..2118237 Roseobacter denitrificans OCh 114 4196524 YP_682496.1 CDS RD1_2218 NC_008209.1 2119485 2121842 R sensory box/GGDEF family protein complement(2119485..2121842) Roseobacter denitrificans OCh 114 4196525 YP_682497.1 CDS RD1_2219 NC_008209.1 2121976 2122503 D hypothetical protein 2121976..2122503 Roseobacter denitrificans OCh 114 4196526 YP_682498.1 CDS RD1_2220 NC_008209.1 2122057 2122443 R hypothetical protein complement(2122057..2122443) Roseobacter denitrificans OCh 114 4196527 YP_682499.1 CDS RD1_2221 NC_008209.1 2122596 2123558 R oligopeptide ABC transporter ATP-binding subunit complement(2122596..2123558) Roseobacter denitrificans OCh 114 4196528 YP_682500.1 CDS RD1_2222 NC_008209.1 2123558 2124532 R peptide ABC transporter ATP-binding protein complement(2123558..2124532) Roseobacter denitrificans OCh 114 4196529 YP_682501.1 CDS RD1_2223 NC_008209.1 2124532 2125476 R peptide ABC transporter permease complement(2124532..2125476) Roseobacter denitrificans OCh 114 4196530 YP_682502.1 CDS RD1_2224 NC_008209.1 2125476 2126456 R peptide ABC transporter permease complement(2125476..2126456) Roseobacter denitrificans OCh 114 4196531 YP_682503.1 CDS RD1_2225 NC_008209.1 2126507 2128072 R solute-binding family 5 protein complement(2126507..2128072) Roseobacter denitrificans OCh 114 4196532 YP_682504.1 CDS RD1_2226 NC_008209.1 2128160 2129740 R extracellular solute-binding protein complement(2128160..2129740) Roseobacter denitrificans OCh 114 4196533 YP_682505.1 CDS RD1_2228 NC_008209.1 2130698 2131927 D CP4-like integrase 2130698..2131927 Roseobacter denitrificans OCh 114 4196497 YP_682506.1 CDS RD1_2229 NC_008209.1 2131953 2132867 D hypothetical protein 2131953..2132867 Roseobacter denitrificans OCh 114 4196498 YP_682507.1 CDS RD1_2231 NC_008209.1 2133116 2133631 D hypothetical protein 2133116..2133631 Roseobacter denitrificans OCh 114 4196499 YP_682508.1 CDS RD1_2232 NC_008209.1 2133684 2134709 D phage integrase family protein 2133684..2134709 Roseobacter denitrificans OCh 114 4196500 YP_682509.1 CDS RD1_2233 NC_008209.1 2134764 2136206 D type I restriction enzyme methyltransferase subunit 2134764..2136206 Roseobacter denitrificans OCh 114 4196501 YP_682510.1 CDS RD1_2234 NC_008209.1 2136203 2137342 D type I restriction enzyme specificity subunit 2136203..2137342 Roseobacter denitrificans OCh 114 4196502 YP_682511.1 CDS RD1_2235 NC_008209.1 2137358 2139706 D type I restriction enzyme subunit 2137358..2139706 Roseobacter denitrificans OCh 114 4196503 YP_682512.1 CDS RD1_2236 NC_008209.1 2140033 2140134 R hypothetical protein complement(2140033..2140134) Roseobacter denitrificans OCh 114 4196504 YP_682513.1 CDS RD1_2237 NC_008209.1 2140244 2141614 D hypothetical protein 2140244..2141614 Roseobacter denitrificans OCh 114 4196505 YP_682514.1 CDS RD1_2238 NC_008209.1 2141873 2142031 R hypothetical protein complement(2141873..2142031) Roseobacter denitrificans OCh 114 4196506 YP_682515.1 CDS RD1_2239 NC_008209.1 2142056 2143024 D hypothetical protein 2142056..2143024 Roseobacter denitrificans OCh 114 4196507 YP_682516.1 CDS RD1_2240 NC_008209.1 2143207 2143899 D ABC transporter ATP-binding protein 2143207..2143899 Roseobacter denitrificans OCh 114 4196508 YP_682517.1 CDS RD1_2241 NC_008209.1 2143896 2146268 D permease 2143896..2146268 Roseobacter denitrificans OCh 114 4196509 YP_682518.1 CDS RD1_2242 NC_008209.1 2146258 2147307 D hypothetical protein 2146258..2147307 Roseobacter denitrificans OCh 114 4196510 YP_682519.1 CDS acdA NC_008209.1 2147387 2148535 D acyl-CoA dehydrogenase 2147387..2148535 Roseobacter denitrificans OCh 114 4196511 YP_682520.1 CDS cheB NC_008209.1 2148669 2149796 D chemotaxis response regulator protein-glutamate methylesterase 2148669..2149796 Roseobacter denitrificans OCh 114 4196512 YP_682521.1 CDS cheD NC_008209.1 2149793 2150308 D chemotaxis protein CheD 2149793..2150308 Roseobacter denitrificans OCh 114 4196513 YP_682522.1 CDS RD1_2246 NC_008209.1 2151207 2152064 R integrase catalytic subunit complement(2151207..2152064) Roseobacter denitrificans OCh 114 4196514 YP_682523.1 CDS RD1_2249 NC_008209.1 2153007 2153933 R metallo-beta-lactamase family protein complement(2153007..2153933) Roseobacter denitrificans OCh 114 4196480 YP_682524.1 CDS RD1_2250 NC_008209.1 2153976 2155301 D sensor histidine kinase 2153976..2155301 Roseobacter denitrificans OCh 114 4196481 YP_682525.1 CDS RD1_2252 NC_008209.1 2155570 2156616 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2155570..2156616 Roseobacter denitrificans OCh 114 4196483 YP_682526.1 CDS RD1_2253 NC_008209.1 2156613 2157209 D phosphoribosylglycinamide formyltransferase 2156613..2157209 Roseobacter denitrificans OCh 114 4196484 YP_682527.1 CDS rnd NC_008209.1 2157298 2158461 D ribonuclease D 2157298..2158461 Roseobacter denitrificans OCh 114 4196485 YP_682528.1 CDS RD1_2255 NC_008209.1 2158470 2158976 R lipoprotein complement(2158470..2158976) Roseobacter denitrificans OCh 114 4196486 YP_682529.1 CDS RD1_2256 NC_008209.1 2159114 2159524 D hypothetical protein 2159114..2159524 Roseobacter denitrificans OCh 114 4196487 YP_682530.1 CDS RD1_2257 NC_008209.1 2159531 2160169 R hypothetical protein complement(2159531..2160169) Roseobacter denitrificans OCh 114 4196488 YP_682531.1 CDS mtbC NC_008209.1 2160211 2160909 R dimethylamine corrinoid protein complement(2160211..2160909) Roseobacter denitrificans OCh 114 4196489 YP_682532.1 CDS RD1_2260 NC_008209.1 2161087 2162109 R catalyzes the formation of methionine from L-homocysteine and S-adenosyl-L-methionine; methionine synthase I complement(2161087..2162109) Roseobacter denitrificans OCh 114 4196490 YP_682533.1 CDS RD1_2261 NC_008209.1 2162282 2162596 R hypothetical protein complement(2162282..2162596) Roseobacter denitrificans OCh 114 4196491 YP_682534.1 CDS purC NC_008209.1 2162753 2163514 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2162753..2163514 Roseobacter denitrificans OCh 114 4196492 YP_682535.1 CDS RD1_2263 NC_008209.1 2163527 2163787 D phosphoribosylformylglycinamidine synthase, PurS protein 2163527..2163787 Roseobacter denitrificans OCh 114 4196493 YP_682536.1 CDS RD1_2264 NC_008209.1 2163787 2164455 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2163787..2164455 Roseobacter denitrificans OCh 114 4196494 YP_682537.1 CDS dctB NC_008209.1 2164550 2166253 D C4-dicarboxylate transport sensor protein dctB 2164550..2166253 Roseobacter denitrificans OCh 114 4196495 YP_682538.1 CDS dctD NC_008209.1 2166257 2167591 D C4-dicarboxylate transport transcriptional regulatory protein DctD 2166257..2167591 Roseobacter denitrificans OCh 114 4196496 YP_682539.1 CDS rne NC_008209.1 2168060 2170819 D ribonuclease E 2168060..2170819 Roseobacter denitrificans OCh 114 4196461 YP_682540.1 CDS RD1_2268 NC_008209.1 2170883 2171113 R hypothetical protein complement(2170883..2171113) Roseobacter denitrificans OCh 114 4196462 YP_682541.1 CDS ccdA NC_008209.1 2171206 2171958 D cytochrome c-type biogenesis protein CcdA 2171206..2171958 Roseobacter denitrificans OCh 114 4196463 YP_682542.1 CDS fda NC_008209.1 2172092 2172964 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2172092..2172964 Roseobacter denitrificans OCh 114 4196464 YP_682543.1 CDS RD1_2271 NC_008209.1 2172949 2173191 R hypothetical protein complement(2172949..2173191) Roseobacter denitrificans OCh 114 4196465 YP_682544.1 CDS RD1_2272 NC_008209.1 2173188 2173364 R hypothetical protein complement(2173188..2173364) Roseobacter denitrificans OCh 114 4196466 YP_682545.1 CDS fumC NC_008209.1 2173361 2174752 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2173361..2174752) Roseobacter denitrificans OCh 114 4196467 YP_682546.1 CDS RD1_2274 NC_008209.1 2174807 2174935 D hypothetical protein 2174807..2174935 Roseobacter denitrificans OCh 114 4196468 YP_682547.1 CDS RD1_2275 NC_008209.1 2174932 2175486 D hypothetical protein 2174932..2175486 Roseobacter denitrificans OCh 114 4196469 YP_682548.1 CDS RD1_2277 NC_008209.1 2175576 2175983 R hypothetical protein complement(2175576..2175983) Roseobacter denitrificans OCh 114 4196470 YP_682549.1 CDS RD1_2278 NC_008209.1 2176075 2177322 R chromate transporter complement(2176075..2177322) Roseobacter denitrificans OCh 114 4196471 YP_682550.1 CDS RD1_2279 NC_008209.1 2177446 2177874 R hypothetical protein complement(2177446..2177874) Roseobacter denitrificans OCh 114 4196472 YP_682551.1 CDS RD1_2281 NC_008209.1 2178437 2178790 R hypothetical protein complement(2178437..2178790) Roseobacter denitrificans OCh 114 4196474 YP_682552.1 CDS RD1_2282 NC_008209.1 2178851 2179360 R hypothetical protein complement(2178851..2179360) Roseobacter denitrificans OCh 114 4196475 YP_682553.1 CDS RD1_2283 NC_008209.1 2179425 2180183 R GntR family transcriptional regulator complement(2179425..2180183) Roseobacter denitrificans OCh 114 4196476 YP_682554.1 CDS RD1_2284 NC_008209.1 2180255 2181043 D hypothetical protein 2180255..2181043 Roseobacter denitrificans OCh 114 4196477 YP_682555.1 CDS RD1_2286 NC_008209.1 2181047 2181754 D hypothetical protein 2181047..2181754 Roseobacter denitrificans OCh 114 4196478 YP_682556.1 CDS RD1_2287 NC_008209.1 2181751 2182260 D DinB family protein 2181751..2182260 Roseobacter denitrificans OCh 114 4196442 YP_682557.1 CDS dmdA NC_008209.1 2182262 2183365 D DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene; dimethyl sulfoniopropionate demethylase 2182262..2183365 Roseobacter denitrificans OCh 114 4196443 YP_682558.1 CDS RD1_2290 NC_008209.1 2183446 2184438 D oxidoreductase 2183446..2184438 Roseobacter denitrificans OCh 114 4196444 YP_682559.1 CDS opuD NC_008209.1 2184559 2186397 R glycine betaine transporter OpuD complement(2184559..2186397) Roseobacter denitrificans OCh 114 4196445 YP_682560.1 CDS RD1_2292 NC_008209.1 2186716 2188389 D glycine betaine transporter 2186716..2188389 Roseobacter denitrificans OCh 114 4196446 YP_682561.1 CDS RD1_2293 NC_008209.1 2188512 2189735 D aminotransferase 2188512..2189735 Roseobacter denitrificans OCh 114 4196447 YP_682562.1 CDS phrB NC_008209.1 2189803 2191221 D deoxyribodipyrimidine photolyase 2189803..2191221 Roseobacter denitrificans OCh 114 4196448 YP_682563.1 CDS cfa NC_008209.1 2191301 2192509 D cyclopropane-fatty-acyl-phospholipid synthase 2191301..2192509 Roseobacter denitrificans OCh 114 4196449 YP_682564.1 CDS trgA NC_008209.1 2192635 2193075 D tellurite resistance protein TrgA 2192635..2193075 Roseobacter denitrificans OCh 114 4196450 YP_682565.1 CDS trgB NC_008209.1 2193092 2194195 D tellurite resistance protein TrgB 2193092..2194195 Roseobacter denitrificans OCh 114 4196451 YP_682566.1 CDS cysB NC_008209.1 2194307 2195344 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2194307..2195344 Roseobacter denitrificans OCh 114 4196452 YP_682567.1 CDS RD1_2300 NC_008209.1 2195341 2197677 D mechanosensitive ion channel protein 2195341..2197677 Roseobacter denitrificans OCh 114 4196453 YP_682568.1 CDS RD1_2302 NC_008209.1 2198082 2198546 R cytochrome c family protein complement(2198082..2198546) Roseobacter denitrificans OCh 114 4196455 YP_682569.1 CDS RD1_2303 NC_008209.1 2198543 2201059 R copper-translocating P-type ATPase complement(2198543..2201059) Roseobacter denitrificans OCh 114 4196456 YP_682570.1 CDS hmrR NC_008209.1 2201200 2201601 D HTH-type transcriptional regulator hmrR 2201200..2201601 Roseobacter denitrificans OCh 114 4196457 YP_682571.1 CDS RD1_2305 NC_008209.1 2201710 2201865 D hypothetical protein 2201710..2201865 Roseobacter denitrificans OCh 114 4196458 YP_682572.1 CDS RD1_2306 NC_008209.1 2201862 2203250 D multicopper oxidase 2201862..2203250 Roseobacter denitrificans OCh 114 4196459 YP_682573.1 CDS RD1_2307 NC_008209.1 2203289 2203750 D hypothetical protein 2203289..2203750 Roseobacter denitrificans OCh 114 4196460 YP_682574.1 CDS RD1_2308 NC_008209.1 2203904 2205004 R oxidoreductase complement(2203904..2205004) Roseobacter denitrificans OCh 114 4196423 YP_682575.1 CDS RD1_2309 NC_008209.1 2205016 2205693 R transcriptional regulator complement(2205016..2205693) Roseobacter denitrificans OCh 114 4196424 YP_682576.1 CDS ssuD NC_008209.1 2205822 2206976 D methanesulfonate sulfonatase 2205822..2206976 Roseobacter denitrificans OCh 114 4196425 YP_682577.1 CDS RD1_2311 NC_008209.1 2206976 2207866 D oxidoreductase 2206976..2207866 Roseobacter denitrificans OCh 114 4196426 YP_682578.1 CDS ntaB NC_008209.1 2207896 2208405 D nitrilotriacetate monooxygenase component B 2207896..2208405 Roseobacter denitrificans OCh 114 4196427 YP_682579.1 CDS RD1_2313 NC_008209.1 2208466 2209056 D C4-dicarboxylate transport system, permease small protein 2208466..2209056 Roseobacter denitrificans OCh 114 4196428 YP_682580.1 CDS dctM NC_008209.1 2209057 2210346 D TRAP-type transporter DctM subunit 2209057..2210346 Roseobacter denitrificans OCh 114 4196429 YP_682581.1 CDS RD1_2315 NC_008209.1 2210372 2211430 D TRAP-type C4-dicarboxylate transport system protein 2210372..2211430 Roseobacter denitrificans OCh 114 4196430 YP_682582.1 CDS RD1_2316 NC_008209.1 2211462 2211932 R hypothetical protein complement(2211462..2211932) Roseobacter denitrificans OCh 114 4196431 YP_682583.1 CDS bglA NC_008209.1 2213309 2214622 R beta-glucosidase A complement(2213309..2214622) Roseobacter denitrificans OCh 114 4196433 YP_682584.1 CDS RD1_2320 NC_008209.1 2214636 2215664 R transcriptional regulator complement(2214636..2215664) Roseobacter denitrificans OCh 114 4196434 YP_682585.1 CDS RD1_2321 NC_008209.1 2215677 2215769 D hypothetical protein 2215677..2215769 Roseobacter denitrificans OCh 114 4196435 YP_682586.1 CDS aglE NC_008209.1 2215922 2217274 D alpha-glucoside ABC transporter substrate-binding protein 2215922..2217274 Roseobacter denitrificans OCh 114 4196436 YP_682587.1 CDS aglF NC_008209.1 2217350 2218330 D alpha-glucoside ABC transporter permease 2217350..2218330 Roseobacter denitrificans OCh 114 4196437 YP_682588.1 CDS aglA NC_008209.1 2219498 2221150 D alpha-glucosidase 2219498..2221150 Roseobacter denitrificans OCh 114 4196439 YP_682589.1 CDS aglK NC_008209.1 2221177 2222274 D alpha-glucoside transporter ATP-binding protein AglK 2221177..2222274 Roseobacter denitrificans OCh 114 4196440 YP_682590.1 CDS RD1_2328 NC_008209.1 2222427 2222822 D hypothetical protein 2222427..2222822 Roseobacter denitrificans OCh 114 4196441 YP_682591.1 CDS RD1_2329 NC_008209.1 2222981 2224795 D outer membrane protein 2222981..2224795 Roseobacter denitrificans OCh 114 4196403 YP_682592.1 CDS RD1_2330 NC_008209.1 2224792 2228409 D hypothetical protein 2224792..2228409 Roseobacter denitrificans OCh 114 4196404 YP_682593.1 CDS ntaB NC_008209.1 2228403 2228924 R nitrilotriacetate monooxygenase component B complement(2228403..2228924) Roseobacter denitrificans OCh 114 4196405 YP_682594.1 CDS acsA NC_008209.1 2229120 2231090 R acetyl-coenzyme A synthetase complement(2229120..2231090) Roseobacter denitrificans OCh 114 4196406 YP_682595.1 CDS RD1_2333 NC_008209.1 2231460 2232476 D TRAP dicarboxylate transporter subunit DctP 2231460..2232476 Roseobacter denitrificans OCh 114 4196407 YP_682596.1 CDS RD1_2334 NC_008209.1 2232547 2233176 D TRAP dicarboxylate transporter DctQ subunit 2232547..2233176 Roseobacter denitrificans OCh 114 4196408 YP_682597.1 CDS RD1_2335 NC_008209.1 2233176 2234576 D TRAP dicarboxylate transporter subunit DctM 2233176..2234576 Roseobacter denitrificans OCh 114 4196409 YP_682598.1 CDS pobA NC_008209.1 2234676 2235851 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(2234676..2235851) Roseobacter denitrificans OCh 114 4196410 YP_682599.1 CDS RD1_2337 NC_008209.1 2235978 2237336 D aminotransferase 2235978..2237336 Roseobacter denitrificans OCh 114 4196411 YP_682600.1 CDS RD1_2338 NC_008209.1 2237337 2238092 R oxidoreductase complement(2237337..2238092) Roseobacter denitrificans OCh 114 4196412 YP_682601.1 CDS RD1_2339 NC_008209.1 2238379 2238483 D hypothetical protein 2238379..2238483 Roseobacter denitrificans OCh 114 4196413 YP_682602.1 CDS RD1_2340 NC_008209.1 2238517 2239008 D acetyltransferase 2238517..2239008 Roseobacter denitrificans OCh 114 4196414 YP_682603.1 CDS RD1_2341 NC_008209.1 2239302 2240342 R glycosyltransferase complement(2239302..2240342) Roseobacter denitrificans OCh 114 4196415 YP_682604.1 CDS RD1_2342 NC_008209.1 2240339 2241871 R ABC transporter permease complement(2240339..2241871) Roseobacter denitrificans OCh 114 4196416 YP_682605.1 CDS RD1_2343 NC_008209.1 2241872 2242618 R ABC transporter ATP-binding protein complement(2241872..2242618) Roseobacter denitrificans OCh 114 4196417 YP_682606.1 CDS RD1_2344 NC_008209.1 2242625 2243563 R hypothetical protein complement(2242625..2243563) Roseobacter denitrificans OCh 114 4196418 YP_682607.1 CDS RD1_2345 NC_008209.1 2243617 2244519 R hypothetical protein complement(2243617..2244519) Roseobacter denitrificans OCh 114 4196419 YP_682608.1 CDS RD1_2346 NC_008209.1 2244519 2246132 R hypothetical protein complement(2244519..2246132) Roseobacter denitrificans OCh 114 4196420 YP_682609.1 CDS RD1_2347 NC_008209.1 2246132 2246716 R hypothetical protein complement(2246132..2246716) Roseobacter denitrificans OCh 114 4196421 YP_682610.1 CDS RD1_2348 NC_008209.1 2246938 2247042 R hypothetical protein complement(2246938..2247042) Roseobacter denitrificans OCh 114 4196422 YP_682611.1 CDS RD1_2349 NC_008209.1 2246989 2247108 D hypothetical protein 2246989..2247108 Roseobacter denitrificans OCh 114 4196384 YP_682612.1 CDS RD1_2350 NC_008209.1 2247138 2247722 D hypothetical protein 2247138..2247722 Roseobacter denitrificans OCh 114 4196385 YP_682613.1 CDS RD1_2351 NC_008209.1 2247801 2247950 D hypothetical protein 2247801..2247950 Roseobacter denitrificans OCh 114 4196386 YP_682614.1 CDS RD1_2352 NC_008209.1 2248077 2250350 R hypothetical protein complement(2248077..2250350) Roseobacter denitrificans OCh 114 4196387 YP_682615.1 CDS RD1_2353 NC_008209.1 2250779 2251654 D hypothetical protein 2250779..2251654 Roseobacter denitrificans OCh 114 4196388 YP_682616.1 CDS grxC NC_008209.1 2251724 2251996 R glutaredoxin 3 complement(2251724..2251996) Roseobacter denitrificans OCh 114 4196389 YP_682617.1 CDS RD1_2355 NC_008209.1 2252048 2252548 R hypothetical protein complement(2252048..2252548) Roseobacter denitrificans OCh 114 4196390 YP_682618.1 CDS RD1_2356 NC_008209.1 2252686 2253282 D TetR family transcriptional regulator 2252686..2253282 Roseobacter denitrificans OCh 114 4196391 YP_682619.1 CDS RD1_2357 NC_008209.1 2253564 2254049 D hypothetical protein 2253564..2254049 Roseobacter denitrificans OCh 114 4196392 YP_682620.1 CDS RD1_2358 NC_008209.1 2254077 2255699 R mechanosensitive channel protein complement(2254077..2255699) Roseobacter denitrificans OCh 114 4196393 YP_682621.1 CDS RD1_2359 NC_008209.1 2255814 2256305 R MarR family transcriptional regulator complement(2255814..2256305) Roseobacter denitrificans OCh 114 4196394 YP_682622.1 CDS van NC_008209.1 2256542 2257612 R vanillate O-demethylase oxygenase complement(2256542..2257612) Roseobacter denitrificans OCh 114 4196395 YP_682623.1 CDS cdd NC_008209.1 2257808 2258251 R cytosine deaminase complement(2257808..2258251) Roseobacter denitrificans OCh 114 4196396 YP_682624.1 CDS RD1_2363 NC_008209.1 2258257 2259150 R hypothetical protein complement(2258257..2259150) Roseobacter denitrificans OCh 114 4196397 YP_682625.1 CDS RD1_2364 NC_008209.1 2259155 2260240 R spermidine/putrescine ABC transporter ATP-binding protein complement(2259155..2260240) Roseobacter denitrificans OCh 114 4196398 YP_682626.1 CDS potC NC_008209.1 2260237 2261037 R spermidine/putrescine transport system, permease complement(2260237..2261037) Roseobacter denitrificans OCh 114 4196399 YP_682627.1 CDS potH NC_008209.1 2261034 2261897 R putrescine ABC transporter permease complement(2261034..2261897) Roseobacter denitrificans OCh 114 4196400 YP_682628.1 CDS RD1_2369 NC_008209.1 2261969 2263108 R spermidine/putrescine ABC transporter substrate-binding protein complement(2261969..2263108) Roseobacter denitrificans OCh 114 4196401 YP_682629.1 CDS RD1_2370 NC_008209.1 2263256 2264149 R LysR family transcriptional regulator complement(2263256..2264149) Roseobacter denitrificans OCh 114 4196402 YP_682630.1 CDS RD1_2371 NC_008209.1 2264189 2264314 D hypothetical protein 2264189..2264314 Roseobacter denitrificans OCh 114 4196364 YP_682631.1 CDS apt NC_008209.1 2264331 2264951 R adenine phosphoribosyltransferase complement(2264331..2264951) Roseobacter denitrificans OCh 114 4196365 YP_682632.1 CDS RD1_2376 NC_008209.1 2265879 2266667 R hypothetical protein complement(2265879..2266667) Roseobacter denitrificans OCh 114 4196366 YP_682633.1 CDS petF NC_008209.1 2266664 2267017 R ferredoxin complement(2266664..2267017) Roseobacter denitrificans OCh 114 4196367 YP_682634.1 CDS sbp NC_008209.1 2267077 2268441 R selenium binding protein complement(2267077..2268441) Roseobacter denitrificans OCh 114 4196368 YP_682635.1 CDS RD1_2379 NC_008209.1 2268454 2269278 R IclR family transcriptional regulator complement(2268454..2269278) Roseobacter denitrificans OCh 114 4196369 YP_682636.1 CDS RD1_2380 NC_008209.1 2269554 2270594 R sugar ABC transporter substrate-binding protein complement(2269554..2270594) Roseobacter denitrificans OCh 114 4196370 YP_682637.1 CDS rbsC NC_008209.1 2270620 2271630 R ribose ABC transporter permease complement(2270620..2271630) Roseobacter denitrificans OCh 114 4196371 YP_682638.1 CDS RD1_2382 NC_008209.1 2271627 2273144 R sugar uptake ABC transporter ATP-binding protein complement(2271627..2273144) Roseobacter denitrificans OCh 114 4196372 YP_682639.1 CDS mtnK NC_008209.1 2273277 2274536 D phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 2273277..2274536 Roseobacter denitrificans OCh 114 4196373 YP_682640.1 CDS mtnA NC_008209.1 2274533 2275636 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 2274533..2275636 Roseobacter denitrificans OCh 114 4196374 YP_682641.1 CDS RD1_2385 NC_008209.1 2275640 2276650 D transcriptional regulator 2275640..2276650 Roseobacter denitrificans OCh 114 4196375 YP_682642.1 CDS RD1_2386 NC_008209.1 2276673 2276921 R hypothetical protein complement(2276673..2276921) Roseobacter denitrificans OCh 114 4196376 YP_682643.1 CDS phnM NC_008209.1 2276933 2278126 R phosphonate metabolism protein PhnM complement(2276933..2278126) Roseobacter denitrificans OCh 114 4196377 YP_682644.1 CDS phnN NC_008209.1 2278410 2278970 R phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN complement(2278410..2278970) Roseobacter denitrificans OCh 114 4196378 YP_682645.1 CDS phnL NC_008209.1 2278967 2279650 R phosphonate C-P lyase system protein PhnL complement(2278967..2279650) Roseobacter denitrificans OCh 114 4196379 YP_682646.1 CDS phnK NC_008209.1 2279654 2280424 R phosphonate C-P lyase system protein PhnK complement(2279654..2280424) Roseobacter denitrificans OCh 114 4196380 YP_682647.1 CDS RD1_2391 NC_008209.1 2280421 2281287 R phosphonate metabolism protein PhnJ complement(2280421..2281287) Roseobacter denitrificans OCh 114 4196381 YP_682648.1 CDS phnI NC_008209.1 2281284 2282372 R phosphonate metabolism protein complement(2281284..2282372) Roseobacter denitrificans OCh 114 4196382 YP_682649.1 CDS phnH NC_008209.1 2282374 2282970 R carbon-phosphorus lyase complex subunit complement(2282374..2282970) Roseobacter denitrificans OCh 114 4196383 YP_682650.1 CDS phnG NC_008209.1 2282970 2283425 R alkylphosphonate utilization protein PhnG complement(2282970..2283425) Roseobacter denitrificans OCh 114 4196345 YP_682651.1 CDS phnF NC_008209.1 2283558 2284226 D phosphonates metabolism transcriptional regulator PhnF 2283558..2284226 Roseobacter denitrificans OCh 114 4196346 YP_682652.1 CDS RD1_2396 NC_008209.1 2284234 2284374 R hypothetical protein complement(2284234..2284374) Roseobacter denitrificans OCh 114 4196347 YP_682653.1 CDS arsC NC_008209.1 2284355 2285203 D arsenate reductase 2284355..2285203 Roseobacter denitrificans OCh 114 4196348 YP_682654.1 CDS gap NC_008209.1 2285200 2286198 D glyceraldehyde-3-phosphate dehydrogenase 2285200..2286198 Roseobacter denitrificans OCh 114 4196349 YP_682655.1 CDS RD1_2399 NC_008209.1 2286195 2287466 D membrane transporter 2286195..2287466 Roseobacter denitrificans OCh 114 4196350 YP_682656.1 CDS RD1_2400 NC_008209.1 2287586 2288215 R acetyltransferase complement(2287586..2288215) Roseobacter denitrificans OCh 114 4196351 YP_682657.1 CDS phnE NC_008209.1 2288281 2290470 R phosphonate ABC transporter permease complement(2288281..2290470) Roseobacter denitrificans OCh 114 4196352 YP_682658.1 CDS RD1_2402 NC_008209.1 2290535 2291446 R phosphonate ABC transporter substrate-binding protein complement(2290535..2291446) Roseobacter denitrificans OCh 114 4196353 YP_682659.1 CDS phnC NC_008209.1 2291541 2292356 R phosphonate ABC transporter ATP-binding protein complement(2291541..2292356) Roseobacter denitrificans OCh 114 4196354 YP_682660.1 CDS hydA NC_008209.1 2293087 2294484 R catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; dihydropyrimidinase complement(2293087..2294484) Roseobacter denitrificans OCh 114 4196355 YP_682661.1 CDS hyuE NC_008209.1 2294481 2295224 R hydantoin racemase complement(2294481..2295224) Roseobacter denitrificans OCh 114 4196356 YP_682662.1 CDS gatA NC_008209.1 2295226 2296563 R glutamyl-tRNA(Gln) amidotransferase, subunit A complement(2295226..2296563) Roseobacter denitrificans OCh 114 4196357 YP_682663.1 CDS RD1_2407 NC_008209.1 2296684 2297484 R ABC transporter permease complement(2296684..2297484) Roseobacter denitrificans OCh 114 4196358 YP_682664.1 CDS RD1_2408 NC_008209.1 2297481 2298311 R spermidine/putrescine ABC transporter permease complement(2297481..2298311) Roseobacter denitrificans OCh 114 4196359 YP_682665.1 CDS potA NC_008209.1 2298308 2299393 R spermidine/putrescine ABC transporter ATP-binding protein complement(2298308..2299393) Roseobacter denitrificans OCh 114 4196360 YP_682666.1 CDS RD1_2410 NC_008209.1 2299398 2300453 R spermidine/putrescine ABC transporter substrate-binding protein complement(2299398..2300453) Roseobacter denitrificans OCh 114 4196361 YP_682667.1 CDS RD1_2411 NC_008209.1 2300598 2301302 R GntR family transcriptional regulator complement(2300598..2301302) Roseobacter denitrificans OCh 114 4196362 YP_682668.1 CDS RD1_2412 NC_008209.1 2301743 2302561 R ABC transporter permease complement(2301743..2302561) Roseobacter denitrificans OCh 114 4196363 YP_682669.1 CDS RD1_2413 NC_008209.1 2302558 2303511 R putrescine ABC transporter permease complement(2302558..2303511) Roseobacter denitrificans OCh 114 4196325 YP_682670.1 CDS RD1_2414 NC_008209.1 2303490 2304518 R spermidine/putrescine ABC transporter ATP-binding protein complement(2303490..2304518) Roseobacter denitrificans OCh 114 4196326 YP_682671.1 CDS RD1_2416 NC_008209.1 2304566 2305615 R extracellular solute-binding protein complement(2304566..2305615) Roseobacter denitrificans OCh 114 4196327 YP_682672.1 CDS RD1_2417 NC_008209.1 2305776 2306549 R DeoR family transcriptional regulator complement(2305776..2306549) Roseobacter denitrificans OCh 114 4196328 YP_682673.1 CDS RD1_2418 NC_008209.1 2306638 2307804 D glucosamine--fructose-6-phosphate aminotransferase 2306638..2307804 Roseobacter denitrificans OCh 114 4196329 YP_682674.1 CDS rbsK NC_008209.1 2307806 2308828 D ribokinase 2307806..2308828 Roseobacter denitrificans OCh 114 4196330 YP_682675.1 CDS btpA NC_008209.1 2308819 2309607 D photosystem I biogenesis protein 2308819..2309607 Roseobacter denitrificans OCh 114 4196331 YP_682676.1 CDS RD1_2421 NC_008209.1 2309604 2310551 D polysaccharide deacetylase 2309604..2310551 Roseobacter denitrificans OCh 114 4196332 YP_682677.1 CDS RD1_2422 NC_008209.1 2310548 2311435 D hypothetical protein 2310548..2311435 Roseobacter denitrificans OCh 114 4196333 YP_682678.1 CDS hyuE NC_008209.1 2311432 2312079 D hydantoin racemase 2311432..2312079 Roseobacter denitrificans OCh 114 4196334 YP_682679.1 CDS RD1_2424 NC_008209.1 2312076 2313587 D amidohydrolase 2312076..2313587 Roseobacter denitrificans OCh 114 4196335 YP_682680.1 CDS RD1_2427 NC_008209.1 2313757 2314893 D ABC transporter ATP-binding protein 2313757..2314893 Roseobacter denitrificans OCh 114 4196336 YP_682681.1 CDS RD1_2428 NC_008209.1 2314935 2315966 D ABC transporter substrate-binding protein 2314935..2315966 Roseobacter denitrificans OCh 114 4196337 YP_682682.1 CDS RD1_2429 NC_008209.1 2315969 2316820 D ABC transporter permease 2315969..2316820 Roseobacter denitrificans OCh 114 4196338 YP_682683.1 CDS RD1_2430 NC_008209.1 2316820 2317641 D ABC transporter permease 2316820..2317641 Roseobacter denitrificans OCh 114 4196339 YP_682684.1 CDS RD1_2431 NC_008209.1 2317649 2318560 D polysaccharide deacetylase 2317649..2318560 Roseobacter denitrificans OCh 114 4196340 YP_682685.1 CDS pam NC_008209.1 2318557 2319411 D peptidylglycine alpha-amidating monooxygenase 2318557..2319411 Roseobacter denitrificans OCh 114 4196341 YP_682686.1 CDS RD1_2433 NC_008209.1 2319517 2319747 R transcriptional regulator complement(2319517..2319747) Roseobacter denitrificans OCh 114 4196342 YP_682687.1 CDS RD1_2434 NC_008209.1 2319749 2320186 R hypothetical protein complement(2319749..2320186) Roseobacter denitrificans OCh 114 4196343 YP_682688.1 CDS RD1_2436 NC_008209.1 2320359 2320928 D hypothetical protein 2320359..2320928 Roseobacter denitrificans OCh 114 4196344 YP_682689.1 CDS RD1_2437 NC_008209.1 2320946 2321254 R hypothetical protein complement(2320946..2321254) Roseobacter denitrificans OCh 114 4196306 YP_682690.1 CDS ftrB NC_008209.1 2321264 2321962 R upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrB complement(2321264..2321962) Roseobacter denitrificans OCh 114 4196307 YP_682691.1 CDS RD1_2439 NC_008209.1 2322219 2322716 D hypothetical protein 2322219..2322716 Roseobacter denitrificans OCh 114 4196308 YP_682692.1 CDS napA NC_008209.1 2322735 2324381 D nitrate permease 2322735..2324381 Roseobacter denitrificans OCh 114 4196309 YP_682693.1 CDS narK NC_008209.1 2324450 2325850 D nitrite extrusion protein 2324450..2325850 Roseobacter denitrificans OCh 114 4196310 YP_682694.1 CDS narG NC_008209.1 2325913 2329653 D nitrate reductase subunit alpha 2325913..2329653 Roseobacter denitrificans OCh 114 4196311 YP_682695.1 CDS narH NC_008209.1 2329650 2331170 D nitrate reductase subunit beta 2329650..2331170 Roseobacter denitrificans OCh 114 4196312 YP_682696.1 CDS narJ NC_008209.1 2331170 2331880 D nitrate reductase subunit delta 2331170..2331880 Roseobacter denitrificans OCh 114 4196313 YP_682697.1 CDS narI NC_008209.1 2331892 2332686 D nitrate reductase subunit gamma 2331892..2332686 Roseobacter denitrificans OCh 114 4196314 YP_682698.1 CDS RD1_2446 NC_008209.1 2332692 2333522 D peptidyl-prolyl cis-trans isomerase 2332692..2333522 Roseobacter denitrificans OCh 114 4196315 YP_682699.1 CDS RD1_2447 NC_008209.1 2334099 2334674 D hypothetical protein 2334099..2334674 Roseobacter denitrificans OCh 114 4196316 YP_682700.1 CDS moeA NC_008209.1 2334703 2335986 D molybdopterin biosynthesis protein moeA 2334703..2335986 Roseobacter denitrificans OCh 114 4196317 YP_682701.1 CDS ilvB NC_008209.1 2336822 2338441 R acetolactate synthase complement(2336822..2338441) Roseobacter denitrificans OCh 114 4196318 YP_682702.1 CDS gdhA NC_008209.1 2338438 2339787 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(2338438..2339787) Roseobacter denitrificans OCh 114 4196319 YP_682703.1 CDS fixK NC_008209.1 2339937 2340665 D nitrogen fixation regulatory protein fixK 2339937..2340665 Roseobacter denitrificans OCh 114 4196320 YP_682704.1 CDS RD1_2452 NC_008209.1 2340705 2341181 D MgtC family protein 2340705..2341181 Roseobacter denitrificans OCh 114 4196321 YP_682705.1 CDS RD1_2453 NC_008209.1 2341132 2342139 D hypothetical protein 2341132..2342139 Roseobacter denitrificans OCh 114 4196322 YP_682706.1 CDS RD1_2454 NC_008209.1 2342546 2342662 D entericidin protein 2342546..2342662 Roseobacter denitrificans OCh 114 4196323 YP_682707.1 CDS RD1_2455 NC_008209.1 2342926 2343528 R ExoD family exopolysaccharide synthesis protein complement(2342926..2343528) Roseobacter denitrificans OCh 114 4196324 YP_682708.1 CDS RD1_2456 NC_008209.1 2343816 2343938 R hypothetical protein complement(2343816..2343938) Roseobacter denitrificans OCh 114 4196286 YP_682709.1 CDS RD1_2457 NC_008209.1 2344225 2344329 R hypothetical protein complement(2344225..2344329) Roseobacter denitrificans OCh 114 4196287 YP_682710.1 CDS RD1_2458 NC_008209.1 2344429 2344611 R hypothetical protein complement(2344429..2344611) Roseobacter denitrificans OCh 114 4196288 YP_682711.1 CDS RD1_2459 NC_008209.1 2344761 2345774 D PRC-barrel domain-containing protein 2344761..2345774 Roseobacter denitrificans OCh 114 4196289 YP_682712.1 CDS RD1_2460 NC_008209.1 2346260 2346709 D hypothetical protein 2346260..2346709 Roseobacter denitrificans OCh 114 4196290 YP_682713.1 CDS RD1_2461 NC_008209.1 2347022 2348140 R sensory transduction histidine kinase complement(2347022..2348140) Roseobacter denitrificans OCh 114 4196291 YP_682714.1 CDS RD1_2462 NC_008209.1 2348777 2349601 R RNA polymerase sigma factor complement(2348777..2349601) Roseobacter denitrificans OCh 114 4196292 YP_682715.1 CDS tcrX NC_008209.1 2349634 2350407 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 2349634..2350407 Roseobacter denitrificans OCh 114 4196293 YP_682716.1 CDS trkA NC_008209.1 2350554 2351204 R Trk potassium uptake system protein complement(2350554..2351204) Roseobacter denitrificans OCh 114 4196294 YP_682717.1 CDS trkH NC_008209.1 2351204 2352634 R Trk potassium uptake system protein, transmembrane component complement(2351204..2352634) Roseobacter denitrificans OCh 114 4196295 YP_682718.1 CDS RD1_2466 NC_008209.1 2352809 2353657 D transporter 2352809..2353657 Roseobacter denitrificans OCh 114 4196296 YP_682719.1 CDS RD1_2467 NC_008209.1 2353715 2353930 R hypothetical protein complement(2353715..2353930) Roseobacter denitrificans OCh 114 4196297 YP_682720.1 CDS RD1_2468 NC_008209.1 2354043 2354312 R hypothetical protein complement(2354043..2354312) Roseobacter denitrificans OCh 114 4196298 YP_682721.1 CDS RD1_2470 NC_008209.1 2354458 2355795 D MatE efflux family protein 2354458..2355795 Roseobacter denitrificans OCh 114 4196299 YP_682722.1 CDS RD1_2471 NC_008209.1 2355865 2356023 R hypothetical protein complement(2355865..2356023) Roseobacter denitrificans OCh 114 4196300 YP_682723.1 CDS RD1_2472 NC_008209.1 2356262 2356486 D hypothetical protein 2356262..2356486 Roseobacter denitrificans OCh 114 4196301 YP_682724.1 CDS RD1_2473 NC_008209.1 2356494 2356877 D hypothetical protein 2356494..2356877 Roseobacter denitrificans OCh 114 4196302 YP_682725.1 CDS RD1_2474 NC_008209.1 2356872 2356964 R hypothetical protein complement(2356872..2356964) Roseobacter denitrificans OCh 114 4196303 YP_682726.1 CDS RD1_2475 NC_008209.1 2357012 2357266 R hypothetical protein complement(2357012..2357266) Roseobacter denitrificans OCh 114 4196304 YP_682727.1 CDS RD1_2476 NC_008209.1 2357656 2358780 D hypothetical protein 2357656..2358780 Roseobacter denitrificans OCh 114 4196305 YP_682728.1 CDS pld NC_008209.1 2358764 2360305 D phospholipase D 2358764..2360305 Roseobacter denitrificans OCh 114 4196267 YP_682729.1 CDS RD1_2478 NC_008209.1 2360519 2361037 D hypothetical protein 2360519..2361037 Roseobacter denitrificans OCh 114 4196268 YP_682730.1 CDS RD1_2479 NC_008209.1 2361034 2361456 D hypothetical protein 2361034..2361456 Roseobacter denitrificans OCh 114 4196269 YP_682731.1 CDS RD1_2481 NC_008209.1 2361449 2362210 D hypothetical protein 2361449..2362210 Roseobacter denitrificans OCh 114 4196270 YP_682732.1 CDS RD1_2482 NC_008209.1 2362266 2362562 D hypothetical protein 2362266..2362562 Roseobacter denitrificans OCh 114 4196271 YP_682733.1 CDS RD1_2485 NC_008209.1 2366021 2367289 D hypothetical protein 2366021..2367289 Roseobacter denitrificans OCh 114 4196273 YP_682734.1 CDS RD1_2486 NC_008209.1 2368323 2369162 R hypothetical protein complement(2368323..2369162) Roseobacter denitrificans OCh 114 4196274 YP_682735.1 CDS helD NC_008209.1 2369250 2372000 R helicase IV complement(2369250..2372000) Roseobacter denitrificans OCh 114 4196275 YP_682736.1 CDS RD1_2490 NC_008209.1 2373866 2375803 R hypothetical protein complement(2373866..2375803) Roseobacter denitrificans OCh 114 4196277 YP_682737.1 CDS RD1_2491 NC_008209.1 2375796 2377076 R reverse transcriptase/maturase family protein complement(2375796..2377076) Roseobacter denitrificans OCh 114 4196278 YP_682738.1 CDS RD1_2492 NC_008209.1 2377621 2379657 D type I secretion target repeat-containing protein 2377621..2379657 Roseobacter denitrificans OCh 114 4196279 YP_682739.1 CDS RD1_2493 NC_008209.1 2380252 2380716 R hypothetical protein complement(2380252..2380716) Roseobacter denitrificans OCh 114 4196280 YP_682740.1 CDS RD1_2494 NC_008209.1 2381564 2382388 D hypothetical protein 2381564..2382388 Roseobacter denitrificans OCh 114 4196281 YP_682741.1 CDS RD1_2495 NC_008209.1 2381609 2382577 R hypothetical protein complement(2381609..2382577) Roseobacter denitrificans OCh 114 4196282 YP_682742.1 CDS RD1_2496 NC_008209.1 2382869 2383438 R transcriptional regulator complement(2382869..2383438) Roseobacter denitrificans OCh 114 4196283 YP_682743.1 CDS RD1_2497 NC_008209.1 2383569 2383946 D hypothetical protein 2383569..2383946 Roseobacter denitrificans OCh 114 4196284 YP_682744.1 CDS RD1_2498 NC_008209.1 2384018 2384965 D pyridoxamine 5'-phosphate oxidase family protein 2384018..2384965 Roseobacter denitrificans OCh 114 4196285 YP_682745.1 CDS RD1_2499 NC_008209.1 2385032 2385463 D hypothetical protein 2385032..2385463 Roseobacter denitrificans OCh 114 4195248 YP_682746.1 CDS RD1_2500 NC_008209.1 2385560 2386456 R LysR family transcriptional regulator complement(2385560..2386456) Roseobacter denitrificans OCh 114 4195249 YP_682747.1 CDS RD1_2501 NC_008209.1 2386556 2387707 D pyridine nucleotide-disulfide oxidoreductase family protein 2386556..2387707 Roseobacter denitrificans OCh 114 4195250 YP_682748.1 CDS RD1_2502 NC_008209.1 2387762 2388646 D oxidoreductase 2387762..2388646 Roseobacter denitrificans OCh 114 4195251 YP_682749.1 CDS RD1_2504 NC_008209.1 2389279 2390283 D tRNA-dihydrouridine synthase A 2389279..2390283 Roseobacter denitrificans OCh 114 4195252 YP_682750.1 CDS RD1_2505 NC_008209.1 2390185 2391216 R hypothetical protein complement(2390185..2391216) Roseobacter denitrificans OCh 114 4195253 YP_682751.1 CDS RD1_2506 NC_008209.1 2390359 2391159 D hypothetical protein 2390359..2391159 Roseobacter denitrificans OCh 114 4195254 YP_682752.1 CDS suhB NC_008209.1 2391269 2392054 D inositol monophosphatase 2391269..2392054 Roseobacter denitrificans OCh 114 4195255 YP_682753.1 CDS RD1_2508 NC_008209.1 2392088 2392831 R hypothetical protein complement(2392088..2392831) Roseobacter denitrificans OCh 114 4195256 YP_682754.1 CDS putA NC_008209.1 2392900 2396319 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(2392900..2396319) Roseobacter denitrificans OCh 114 4195257 YP_682755.1 CDS putR NC_008209.1 2396453 2396914 D proline dehydrogenase 2396453..2396914 Roseobacter denitrificans OCh 114 4195258 YP_682756.1 CDS RD1_2511 NC_008209.1 2396946 2397500 D hypothetical protein 2396946..2397500 Roseobacter denitrificans OCh 114 4195259 YP_682757.1 CDS mcpA NC_008209.1 2397982 2400573 D methyl-accepting chemotaxis protein McpA 2397982..2400573 Roseobacter denitrificans OCh 114 4195261 YP_682758.1 CDS RD1_2514 NC_008209.1 2401024 2401152 R hypothetical protein complement(2401024..2401152) Roseobacter denitrificans OCh 114 4195262 YP_682759.1 CDS RD1_2515 NC_008209.1 2401100 2401192 D hypothetical protein 2401100..2401192 Roseobacter denitrificans OCh 114 4195263 YP_682760.1 CDS metG NC_008209.1 2402719 2404437 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2402719..2404437) Roseobacter denitrificans OCh 114 4195264 YP_682761.1 CDS RD1_2517 NC_008209.1 2404507 2405739 R major facilitator transporter complement(2404507..2405739) Roseobacter denitrificans OCh 114 4195265 YP_682762.1 CDS RD1_2518 NC_008209.1 2405805 2406401 R hypothetical protein complement(2405805..2406401) Roseobacter denitrificans OCh 114 4195266 YP_682763.1 CDS RD1_2519 NC_008209.1 2406459 2407082 R hypothetical protein complement(2406459..2407082) Roseobacter denitrificans OCh 114 4195267 YP_682764.1 CDS RD1_2520 NC_008209.1 2407223 2408266 D oxidoreductase 2407223..2408266 Roseobacter denitrificans OCh 114 4195268 YP_682765.1 CDS RD1_2521 NC_008209.1 2408365 2409279 D hypothetical protein 2408365..2409279 Roseobacter denitrificans OCh 114 4195269 YP_682766.1 CDS RD1_2522 NC_008209.1 2409303 2409767 D hypothetical protein 2409303..2409767 Roseobacter denitrificans OCh 114 4195270 YP_682767.1 CDS RD1_2523 NC_008209.1 2409764 2411233 D Converts (S)-3-hydroxyacyl-CoA to 3-oxyacyl-CoA; may also act as a thioesterase; bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase 2409764..2411233 Roseobacter denitrificans OCh 114 4195271 YP_682768.1 CDS RD1_2524 NC_008209.1 2411336 2412253 D hypothetical protein 2411336..2412253 Roseobacter denitrificans OCh 114 4195272 YP_682769.1 CDS RD1_2525 NC_008209.1 2412365 2413033 R hydrolase complement(2412365..2413033) Roseobacter denitrificans OCh 114 4195273 YP_682770.1 CDS RD1_2526 NC_008209.1 2413111 2413527 R hypothetical protein complement(2413111..2413527) Roseobacter denitrificans OCh 114 4195274 YP_682771.1 CDS pleD NC_008209.1 2414021 2415490 R diguanylate cyclase response regulator complement(2414021..2415490) Roseobacter denitrificans OCh 114 4195275 YP_682772.1 CDS RD1_2528 NC_008209.1 2415526 2415810 D hypothetical protein 2415526..2415810 Roseobacter denitrificans OCh 114 4195276 YP_682773.1 CDS RD1_2529 NC_008209.1 2415807 2416499 D haloacid dehalogenase 2415807..2416499 Roseobacter denitrificans OCh 114 4195277 YP_682774.1 CDS RD1_2530 NC_008209.1 2416595 2418157 D trimethylamine methyltransferase family protein 2416595..2418157 Roseobacter denitrificans OCh 114 4195278 YP_682775.1 CDS RD1_2531 NC_008209.1 2418229 2418816 D hypothetical protein 2418229..2418816 Roseobacter denitrificans OCh 114 4195279 YP_682776.1 CDS RD1_2532 NC_008209.1 2418813 2419808 D diguanylate cyclase 2418813..2419808 Roseobacter denitrificans OCh 114 4195280 YP_682777.1 CDS acrF NC_008209.1 2419917 2423048 R RND multidrug efflux transporter protein complement(2419917..2423048) Roseobacter denitrificans OCh 114 4195281 YP_682778.1 CDS acrE NC_008209.1 2423053 2424219 R RND efflux transporter MFP subunit complement(2423053..2424219) Roseobacter denitrificans OCh 114 4195282 YP_682779.1 CDS recJ NC_008209.1 2424974 2426713 R single-stranded-DNA-specific exonuclease RecJ complement(2424974..2426713) Roseobacter denitrificans OCh 114 4195284 YP_682780.1 CDS glpX NC_008209.1 2426748 2427722 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(2426748..2427722) Roseobacter denitrificans OCh 114 4198871 YP_682781.1 CDS hom NC_008209.1 2427807 2429093 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2427807..2429093) Roseobacter denitrificans OCh 114 4198872 YP_682782.1 CDS RD1_2539 NC_008209.1 2429189 2429575 R hypothetical protein complement(2429189..2429575) Roseobacter denitrificans OCh 114 4198873 YP_682783.1 CDS garR NC_008209.1 2429638 2430582 D 2-hydroxy-3-oxopropionate reductase 2429638..2430582 Roseobacter denitrificans OCh 114 4198874 YP_682784.1 CDS serS NC_008209.1 2430595 2431887 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2430595..2431887) Roseobacter denitrificans OCh 114 4198875 YP_682785.1 CDS RD1_2542 NC_008209.1 2431977 2432786 R trypsin domain-containing protein complement(2431977..2432786) Roseobacter denitrificans OCh 114 4198876 YP_682786.1 CDS yajC NC_008209.1 2432905 2433183 D preprotein translocase subunit YajC 2432905..2433183 Roseobacter denitrificans OCh 114 4198877 YP_682787.1 CDS secD NC_008209.1 2433217 2434878 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2433217..2434878 Roseobacter denitrificans OCh 114 4198878 YP_682788.1 CDS secF NC_008209.1 2434880 2435860 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2434880..2435860 Roseobacter denitrificans OCh 114 4198879 YP_682789.1 CDS RD1_2546 NC_008209.1 2435874 2436233 D hypothetical protein 2435874..2436233 Roseobacter denitrificans OCh 114 4198880 YP_682790.1 CDS ccmA NC_008209.1 2436278 2436898 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2436278..2436898 Roseobacter denitrificans OCh 114 4198881 YP_682791.1 CDS ccmB NC_008209.1 2436895 2437551 D heme exporter protein ccmB 2436895..2437551 Roseobacter denitrificans OCh 114 4198882 YP_682792.1 CDS ccmC NC_008209.1 2437604 2438371 D heme exporter protein 2437604..2438371 Roseobacter denitrificans OCh 114 4198883 YP_682793.1 CDS RD1_2550 NC_008209.1 2438368 2438526 D hypothetical protein 2438368..2438526 Roseobacter denitrificans OCh 114 4198884 YP_682794.1 CDS cycY NC_008209.1 2438519 2439058 D thiol:disulfide interchange protein cycY 2438519..2439058 Roseobacter denitrificans OCh 114 4198885 YP_682795.1 CDS gltK NC_008209.1 2439322 2439930 R glucose ABC transporter ATP-binding subunit complement(2439322..2439930) Roseobacter denitrificans OCh 114 4198886 YP_682796.1 CDS RD1_2553 NC_008209.1 2440108 2440536 R ABC transporter permease complement(2440108..2440536) Roseobacter denitrificans OCh 114 4198887 YP_682797.1 CDS RD1_2554 NC_008209.1 2440696 2441319 R hypothetical protein complement(2440696..2441319) Roseobacter denitrificans OCh 114 4198888 YP_682798.1 CDS acnA NC_008209.1 2441611 2444298 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2441611..2444298) Roseobacter denitrificans OCh 114 4198889 YP_682799.1 CDS RD1_2556 NC_008209.1 2444529 2445224 D hypothetical protein 2444529..2445224 Roseobacter denitrificans OCh 114 4198890 YP_682800.1 CDS RD1_2557 NC_008209.1 2445230 2446132 R lipid A biosynthesis lauroyl acyltransferase complement(2445230..2446132) Roseobacter denitrificans OCh 114 4195172 YP_682801.1 CDS fliG NC_008209.1 2446346 2447404 R flagellar motor switch protein FliG complement(2446346..2447404) Roseobacter denitrificans OCh 114 4195173 YP_682802.1 CDS purB NC_008209.1 2447942 2449246 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2447942..2449246) Roseobacter denitrificans OCh 114 4195174 YP_682803.1 CDS RD1_2560 NC_008209.1 2449417 2449821 D hypothetical protein 2449417..2449821 Roseobacter denitrificans OCh 114 4195175 YP_682804.1 CDS bioY NC_008209.1 2449897 2450502 D BioY family protein 2449897..2450502 Roseobacter denitrificans OCh 114 4195176 YP_682805.1 CDS RD1_2562 NC_008209.1 2450637 2451206 D hypothetical protein 2450637..2451206 Roseobacter denitrificans OCh 114 4195177 YP_682806.1 CDS RD1_2563 NC_008209.1 2451559 2452776 R hypothetical protein complement(2451559..2452776) Roseobacter denitrificans OCh 114 4195178 YP_682807.1 CDS RD1_2564 NC_008209.1 2453031 2453930 D hypothetical protein 2453031..2453930 Roseobacter denitrificans OCh 114 4195179 YP_682808.1 CDS RD1_2565 NC_008209.1 2453985 2454698 R hypothetical protein complement(2453985..2454698) Roseobacter denitrificans OCh 114 4195180 YP_682809.1 CDS RD1_2566 NC_008209.1 2454926 2456269 R M24 family metallopeptidase complement(2454926..2456269) Roseobacter denitrificans OCh 114 4195181 YP_682810.1 CDS RD1_2567 NC_008209.1 2456398 2456868 D hypothetical protein 2456398..2456868 Roseobacter denitrificans OCh 114 4195182 YP_682811.1 CDS RD1_2568 NC_008209.1 2456907 2457128 D hypothetical protein 2456907..2457128 Roseobacter denitrificans OCh 114 4195183 YP_682812.1 CDS glnA NC_008209.1 2457282 2458685 R glutamine synthetase, type I complement(2457282..2458685) Roseobacter denitrificans OCh 114 4195184 YP_682813.1 CDS glnB NC_008209.1 2458734 2459072 R nitrogen regulatory protein P-II complement(2458734..2459072) Roseobacter denitrificans OCh 114 4195185 YP_682814.1 CDS RD1_2573 NC_008209.1 2460914 2461444 R hypothetical protein complement(2460914..2461444) Roseobacter denitrificans OCh 114 4195187 YP_682815.1 CDS ssb NC_008209.1 2461914 2462414 R single-strand binding protein complement(2461914..2462414) Roseobacter denitrificans OCh 114 4195189 YP_682816.1 CDS RD1_2576 NC_008209.1 2462636 2463220 D transglycosylase 2462636..2463220 Roseobacter denitrificans OCh 114 4195018 YP_682817.1 CDS RD1_2578 NC_008209.1 2463289 2465379 R ABC transporter ATP-binding protein complement(2463289..2465379) Roseobacter denitrificans OCh 114 4195019 YP_682818.1 CDS RD1_2580 NC_008209.1 2465464 2466681 R oligopeptide ABC transporter permease complement(2465464..2466681) Roseobacter denitrificans OCh 114 4195020 YP_682819.1 CDS RD1_2581 NC_008209.1 2466694 2467737 R oligopeptide ABC transporter permease complement(2466694..2467737) Roseobacter denitrificans OCh 114 4195021 YP_682820.1 CDS pobR NC_008209.1 2467946 2468749 R AraC family transcriptional regulator complement(2467946..2468749) Roseobacter denitrificans OCh 114 4195022 YP_682821.1 CDS RD1_2583 NC_008209.1 2468784 2468933 D hypothetical protein 2468784..2468933 Roseobacter denitrificans OCh 114 4195023 YP_682822.1 CDS miaA NC_008209.1 2468851 2469690 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(2468851..2469690) Roseobacter denitrificans OCh 114 4195024 YP_682823.1 CDS pyrH NC_008209.1 2469832 2470560 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2469832..2470560 Roseobacter denitrificans OCh 114 4195025 YP_682824.1 CDS frr NC_008209.1 2470644 2471207 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2470644..2471207 Roseobacter denitrificans OCh 114 4195026 YP_682825.1 CDS uppS NC_008209.1 2471371 2472147 D UDP diphosphate synthase 2471371..2472147 Roseobacter denitrificans OCh 114 4195027 YP_682826.1 CDS RD1_2588 NC_008209.1 2472154 2472948 D phosphatidate cytidylyltransferase 2472154..2472948 Roseobacter denitrificans OCh 114 4195028 YP_682827.1 CDS dxr NC_008209.1 2472956 2474128 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2472956..2474128 Roseobacter denitrificans OCh 114 4195029 YP_682828.1 CDS ecfE NC_008209.1 2474140 2475483 D protease ecfE 2474140..2475483 Roseobacter denitrificans OCh 114 4195030 YP_682829.1 CDS RD1_2592 NC_008209.1 2475586 2475717 D hypothetical protein 2475586..2475717 Roseobacter denitrificans OCh 114 4195031 YP_682830.1 CDS RD1_2593 NC_008209.1 2475883 2478213 D outer membrane protein 2475883..2478213 Roseobacter denitrificans OCh 114 4195032 YP_682831.1 CDS RD1_2594 NC_008209.1 2478217 2478780 D hypothetical protein 2478217..2478780 Roseobacter denitrificans OCh 114 4195033 YP_682832.1 CDS fabZ NC_008209.1 2478861 2479319 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2478861..2479319 Roseobacter denitrificans OCh 114 4195034 YP_682833.1 CDS lpxA NC_008209.1 2479323 2480108 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2479323..2480108 Roseobacter denitrificans OCh 114 4195035 YP_682834.1 CDS RD1_2597 NC_008209.1 2480108 2480899 D hypothetical protein 2480108..2480899 Roseobacter denitrificans OCh 114 4195036 YP_682835.1 CDS lpxB NC_008209.1 2480896 2482056 D lipid-A-disaccharide synthase 2480896..2482056 Roseobacter denitrificans OCh 114 4195037 YP_682836.1 CDS mnmA NC_008209.1 2482120 2483262 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2482120..2483262) Roseobacter denitrificans OCh 114 4194960 YP_682837.1 CDS RD1_2600 NC_008209.1 2483356 2483664 D hypothetical protein 2483356..2483664 Roseobacter denitrificans OCh 114 4194961 YP_682838.1 CDS ctrA NC_008209.1 2483764 2484483 D transcriptional regulator CtrA 2483764..2484483 Roseobacter denitrificans OCh 114 4194962 YP_682839.1 CDS ligA NC_008209.1 2484611 2486728 D NAD-dependent DNA ligase 2484611..2486728 Roseobacter denitrificans OCh 114 4194963 YP_682840.1 CDS recG NC_008209.1 2486725 2488815 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2486725..2488815 Roseobacter denitrificans OCh 114 4194964 YP_682841.1 CDS RD1_2605 NC_008209.1 2489200 2490597 R methyl-accepting chemotaxis protein complement(2489200..2490597) Roseobacter denitrificans OCh 114 4194965 YP_682842.1 CDS RD1_2606 NC_008209.1 2490670 2491122 R hypothetical protein complement(2490670..2491122) Roseobacter denitrificans OCh 114 4194966 YP_682843.1 CDS hisI NC_008209.1 2491200 2491586 D phosphoribosyl-AMP cyclohydrolase 2491200..2491586 Roseobacter denitrificans OCh 114 4194967 YP_682844.1 CDS RD1_2608 NC_008209.1 2491583 2492446 R glutamyl-tRNA synthetase complement(2491583..2492446) Roseobacter denitrificans OCh 114 4194968 YP_682845.1 CDS RD1_2609 NC_008209.1 2492443 2493057 R hypothetical protein complement(2492443..2493057) Roseobacter denitrificans OCh 114 4194969 YP_682846.1 CDS gid NC_008209.1 2493096 2494448 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(2493096..2494448) Roseobacter denitrificans OCh 114 4194970 YP_682847.1 CDS RD1_2611 NC_008209.1 2494596 2495015 D thioesterase family protein 2494596..2495015 Roseobacter denitrificans OCh 114 4194971 YP_682848.1 CDS rpsI NC_008209.1 2495186 2495677 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2495186..2495677) Roseobacter denitrificans OCh 114 4194972 YP_682849.1 CDS rplM NC_008209.1 2495680 2496141 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2495680..2496141) Roseobacter denitrificans OCh 114 4194973 YP_682850.1 CDS RD1_2614 NC_008209.1 2496716 2498182 D hypothetical protein 2496716..2498182 Roseobacter denitrificans OCh 114 4194974 YP_682851.1 CDS RD1_2615 NC_008209.1 2498179 2498724 D hypothetical protein 2498179..2498724 Roseobacter denitrificans OCh 114 4194975 YP_682852.1 CDS RD1_2616 NC_008209.1 2498721 2499344 D hypothetical protein 2498721..2499344 Roseobacter denitrificans OCh 114 4194976 YP_682853.1 CDS RD1_2617 NC_008209.1 2499362 2499931 R hypothetical protein complement(2499362..2499931) Roseobacter denitrificans OCh 114 4194977 YP_682854.1 CDS RD1_2618 NC_008209.1 2500070 2500198 R hypothetical protein complement(2500070..2500198) Roseobacter denitrificans OCh 114 4194978 YP_682855.1 CDS RD1_2619 NC_008209.1 2500244 2501857 D peptidoglycan binding domain-containing protein 2500244..2501857 Roseobacter denitrificans OCh 114 4195946 YP_682856.1 CDS lpxD NC_008209.1 2501890 2502990 D UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase 2501890..2502990 Roseobacter denitrificans OCh 114 4195947 YP_682857.1 CDS RD1_2621 NC_008209.1 2502977 2503282 D acyl carrier protein 2502977..2503282 Roseobacter denitrificans OCh 114 4195948 YP_682858.1 CDS RD1_2623 NC_008209.1 2503289 2504497 D beta-ketoacyl synthase family protein 2503289..2504497 Roseobacter denitrificans OCh 114 4195949 YP_682859.1 CDS RD1_2624 NC_008209.1 2504518 2505195 R hypothetical protein complement(2504518..2505195) Roseobacter denitrificans OCh 114 4195950 YP_682860.1 CDS RD1_2625 NC_008209.1 2505535 2507088 D hypothetical protein 2505535..2507088 Roseobacter denitrificans OCh 114 4195951 YP_682861.1 CDS RD1_2626 NC_008209.1 2507099 2508415 R branched-chain amino acid ABC transporter permease complement(2507099..2508415) Roseobacter denitrificans OCh 114 4195952 YP_682862.1 CDS RD1_2627 NC_008209.1 2508412 2509422 R branched-chain amino acid ABC transporter permease complement(2508412..2509422) Roseobacter denitrificans OCh 114 4195953 YP_682863.1 CDS RD1_2628 NC_008209.1 2509901 2510725 R branched-chain amino acid ABC transporter ATP-binding protein complement(2509901..2510725) Roseobacter denitrificans OCh 114 4195954 YP_682864.1 CDS RD1_2630 NC_008209.1 2510722 2511519 R branched-chain amino acid ABC transporter ATP-binding protein complement(2510722..2511519) Roseobacter denitrificans OCh 114 4195955 YP_682865.1 CDS RD1_2631 NC_008209.1 2511596 2512786 R branched-chain amino acid ABC transporter substrate-binding protein complement(2511596..2512786) Roseobacter denitrificans OCh 114 4195956 YP_682866.1 CDS RD1_2632 NC_008209.1 2512799 2512915 D hypothetical protein 2512799..2512915 Roseobacter denitrificans OCh 114 4195957 YP_682867.1 CDS RD1_2633 NC_008209.1 2512944 2514032 D glucose dehydrogenase 2512944..2514032 Roseobacter denitrificans OCh 114 4195958 YP_682868.1 CDS RD1_2634 NC_008209.1 2514106 2515050 R AraC family transcriptional regulator complement(2514106..2515050) Roseobacter denitrificans OCh 114 4195959 YP_682869.1 CDS RD1_2635 NC_008209.1 2515310 2516680 D phospho-2-dehydro-3-deoxyheptonate aldolase 2515310..2516680 Roseobacter denitrificans OCh 114 4195960 YP_682870.1 CDS RD1_2636 NC_008209.1 2516779 2517492 R hypothetical protein complement(2516779..2517492) Roseobacter denitrificans OCh 114 4195961 YP_682871.1 CDS RD1_2637 NC_008209.1 2517760 2518650 D hypothetical protein 2517760..2518650 Roseobacter denitrificans OCh 114 4195962 YP_682872.1 CDS gmk NC_008209.1 2518663 2519298 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2518663..2519298 Roseobacter denitrificans OCh 114 4195963 YP_682873.1 CDS RD1_2639 NC_008209.1 2519295 2519822 D transferase 2519295..2519822 Roseobacter denitrificans OCh 114 4195964 YP_682874.1 CDS mdeA NC_008209.1 2519824 2521011 D methionine gamma-lyase 2519824..2521011 Roseobacter denitrificans OCh 114 4195965 YP_682875.1 CDS phoR NC_008209.1 2521030 2522073 D phosphate regulon sensor protein 2521030..2522073 Roseobacter denitrificans OCh 114 4196190 YP_682876.1 CDS pstS NC_008209.1 2522268 2523308 D phosphate ABC transporter substrate-binding protein 2522268..2523308 Roseobacter denitrificans OCh 114 4196191 YP_682877.1 CDS pstC NC_008209.1 2523371 2524882 D phosphate ABC transporter permease 2523371..2524882 Roseobacter denitrificans OCh 114 4196192 YP_682878.1 CDS pstA NC_008209.1 2524879 2526243 D phosphate ABC transporter permease 2524879..2526243 Roseobacter denitrificans OCh 114 4196193 YP_682879.1 CDS pstB NC_008209.1 2526256 2527053 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2526256..2527053 Roseobacter denitrificans OCh 114 4196194 YP_682880.1 CDS phoU NC_008209.1 2527058 2527768 D phosphate transport system regulatory protein PhoU 2527058..2527768 Roseobacter denitrificans OCh 114 4196195 YP_682881.1 CDS phoB NC_008209.1 2527774 2528463 D phosphate regulon transcriptional regulatory protein PhoB 2527774..2528463 Roseobacter denitrificans OCh 114 4196196 YP_682882.1 CDS RD1_2649 NC_008209.1 2528469 2529305 R hypothetical protein complement(2528469..2529305) Roseobacter denitrificans OCh 114 4196197 YP_682883.1 CDS RD1_2650 NC_008209.1 2529548 2530540 D transposase 2529548..2530540 Roseobacter denitrificans OCh 114 4196198 YP_682884.1 CDS aroQ NC_008209.1 2530718 2531155 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2530718..2531155 Roseobacter denitrificans OCh 114 4196199 YP_682885.1 CDS tsf NC_008209.1 2531236 2532111 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2531236..2532111) Roseobacter denitrificans OCh 114 4196200 YP_682886.1 CDS rpsB NC_008209.1 2532193 2532975 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2532193..2532975) Roseobacter denitrificans OCh 114 4196201 YP_682887.1 CDS RD1_2654 NC_008209.1 2533255 2533842 D hypothetical protein 2533255..2533842 Roseobacter denitrificans OCh 114 4196202 YP_682888.1 CDS RD1_2655 NC_008209.1 2533850 2534671 R acyltransferase complement(2533850..2534671) Roseobacter denitrificans OCh 114 4196203 YP_682889.1 CDS RD1_2656 NC_008209.1 2534668 2535432 R hypothetical protein complement(2534668..2535432) Roseobacter denitrificans OCh 114 4196204 YP_682890.1 CDS RD1_2657 NC_008209.1 2535768 2536364 D hypothetical protein 2535768..2536364 Roseobacter denitrificans OCh 114 4196205 YP_682891.1 CDS proA NC_008209.1 2536464 2537729 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(2536464..2537729) Roseobacter denitrificans OCh 114 4196206 YP_682892.1 CDS proB NC_008209.1 2537759 2538883 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(2537759..2538883) Roseobacter denitrificans OCh 114 4196207 YP_682893.1 CDS obgE NC_008209.1 2538871 2539905 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2538871..2539905) Roseobacter denitrificans OCh 114 4196208 YP_682894.1 CDS RD1_2661 NC_008209.1 2539941 2540477 R acetyltransferase complement(2539941..2540477) Roseobacter denitrificans OCh 114 4195095 YP_682895.1 CDS RD1_2662 NC_008209.1 2540480 2541082 R amino acid transporter LysE complement(2540480..2541082) Roseobacter denitrificans OCh 114 4195096 YP_682896.1 CDS rpmA NC_008209.1 2541704 2541973 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2541704..2541973) Roseobacter denitrificans OCh 114 4195097 YP_682897.1 CDS RD1_2665 NC_008209.1 2541985 2542809 R fusion of ribosomal protein L21 and COG3743; 50S ribosomal protein L21 complement(2541985..2542809) Roseobacter denitrificans OCh 114 4195098 YP_682898.1 CDS RD1_2666 NC_008209.1 2542821 2543630 R hypothetical protein complement(2542821..2543630) Roseobacter denitrificans OCh 114 4195099 YP_682899.1 CDS RD1_2668 NC_008209.1 2543634 2544473 R hypothetical protein complement(2543634..2544473) Roseobacter denitrificans OCh 114 4195100 YP_682900.1 CDS RD1_2670 NC_008209.1 2544856 2545377 R hypothetical protein complement(2544856..2545377) Roseobacter denitrificans OCh 114 4195102 YP_682901.1 CDS RD1_2671 NC_008209.1 2545670 2546662 R hypothetical protein complement(2545670..2546662) Roseobacter denitrificans OCh 114 4195103 YP_682902.1 CDS RD1_2672 NC_008209.1 2546948 2547418 D hypothetical protein 2546948..2547418 Roseobacter denitrificans OCh 114 4195104 YP_682903.1 CDS RD1_2673 NC_008209.1 2547677 2548837 D iron ABC transporter substrate-binding protein 2547677..2548837 Roseobacter denitrificans OCh 114 4195105 YP_682904.1 CDS RD1_2674 NC_008209.1 2548884 2549954 D iron ABC transporter 2548884..2549954 Roseobacter denitrificans OCh 114 4195106 YP_682905.1 CDS RD1_2675 NC_008209.1 2549954 2550724 D Fe-ABC transporter ATP-binding subunit 2549954..2550724 Roseobacter denitrificans OCh 114 4195107 YP_682906.1 CDS bcp NC_008209.1 2550708 2551190 D pseudoazurin 2550708..2551190 Roseobacter denitrificans OCh 114 4195108 YP_682907.1 CDS RD1_2677 NC_008209.1 2551317 2551436 R hypothetical protein complement(2551317..2551436) Roseobacter denitrificans OCh 114 4195109 YP_682908.1 CDS RD1_2678 NC_008209.1 2551435 2553387 D peptidase 2551435..2553387 Roseobacter denitrificans OCh 114 4195110 YP_682909.1 CDS RD1_2679 NC_008209.1 2553407 2554444 R hypothetical protein complement(2553407..2554444) Roseobacter denitrificans OCh 114 4195111 YP_682910.1 CDS RD1_2681 NC_008209.1 2554448 2555974 R hypothetical protein complement(2554448..2555974) Roseobacter denitrificans OCh 114 4195112 YP_682911.1 CDS RD1_2682 NC_008209.1 2556022 2556807 R hypothetical protein complement(2556022..2556807) Roseobacter denitrificans OCh 114 4195113 YP_682912.1 CDS RD1_2683 NC_008209.1 2557063 2557671 D hypothetical protein 2557063..2557671 Roseobacter denitrificans OCh 114 4195190 YP_682913.1 CDS glsA NC_008209.1 2558058 2558963 D glutaminase A 2558058..2558963 Roseobacter denitrificans OCh 114 4195191 YP_682914.1 CDS RD1_2685 NC_008209.1 2559207 2561657 D tyrosine decarboxylase 2559207..2561657 Roseobacter denitrificans OCh 114 4195192 YP_682915.1 CDS RD1_2686 NC_008209.1 2561670 2562596 D hypothetical protein 2561670..2562596 Roseobacter denitrificans OCh 114 4195193 YP_682916.1 CDS cyaA NC_008209.1 2562583 2563410 D adenylate cyclase 2562583..2563410 Roseobacter denitrificans OCh 114 4195194 YP_682917.1 CDS sufS NC_008209.1 2563688 2564908 R cysteine desulfurase complement(2563688..2564908) Roseobacter denitrificans OCh 114 4195196 YP_682918.1 CDS RD1_2690 NC_008209.1 2564901 2565482 R hypothetical protein complement(2564901..2565482) Roseobacter denitrificans OCh 114 4195197 YP_682919.1 CDS RD1_2691 NC_008209.1 2565494 2565979 R hypothetical protein complement(2565494..2565979) Roseobacter denitrificans OCh 114 4195198 YP_682920.1 CDS sufD NC_008209.1 2565979 2567259 R FeS assembly protein SufD complement(2565979..2567259) Roseobacter denitrificans OCh 114 4195199 YP_682921.1 CDS sufC NC_008209.1 2567259 2568014 R FeS assembly ATPase SufC complement(2567259..2568014) Roseobacter denitrificans OCh 114 4195200 YP_682922.1 CDS RD1_2695 NC_008209.1 2568086 2568400 R hypothetical protein complement(2568086..2568400) Roseobacter denitrificans OCh 114 4195201 YP_682923.1 CDS sufB NC_008209.1 2568490 2570028 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(2568490..2570028) Roseobacter denitrificans OCh 114 4195202 YP_682924.1 CDS nifS NC_008209.1 2570044 2571087 R cysteine desulfurase complement(2570044..2571087) Roseobacter denitrificans OCh 114 4195203 YP_682925.1 CDS RD1_2700 NC_008209.1 2571118 2571591 R transcriptional regulator complement(2571118..2571591) Roseobacter denitrificans OCh 114 4195204 YP_682926.1 CDS RD1_2701 NC_008209.1 2571770 2572423 D hypothetical protein 2571770..2572423 Roseobacter denitrificans OCh 114 4195205 YP_682927.1 CDS RD1_2702 NC_008209.1 2572427 2572669 D hypothetical protein 2572427..2572669 Roseobacter denitrificans OCh 114 4195206 YP_682928.1 CDS RD1_2703 NC_008209.1 2572662 2573249 D hypothetical protein 2572662..2573249 Roseobacter denitrificans OCh 114 4195207 YP_682929.1 CDS icd NC_008209.1 2573354 2574568 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2573354..2574568 Roseobacter denitrificans OCh 114 4196171 YP_682930.1 CDS RD1_2705 NC_008209.1 2574546 2574710 R hypothetical protein complement(2574546..2574710) Roseobacter denitrificans OCh 114 4196172 YP_682931.1 CDS qacE NC_008209.1 2574906 2575241 D quaternary ammonium compound-resistance protein 2574906..2575241 Roseobacter denitrificans OCh 114 4196173 YP_682932.1 CDS typA NC_008209.1 2575353 2577170 D GTP-binding protein TypA 2575353..2577170 Roseobacter denitrificans OCh 114 4196174 YP_682933.1 CDS RD1_2708 NC_008209.1 2577213 2577500 R hypothetical protein complement(2577213..2577500) Roseobacter denitrificans OCh 114 4196175 YP_682934.1 CDS alaS NC_008209.1 2577505 2580162 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2577505..2580162) Roseobacter denitrificans OCh 114 4196176 YP_682935.1 CDS recA NC_008209.1 2580309 2581388 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2580309..2581388) Roseobacter denitrificans OCh 114 4196177 YP_682936.1 CDS RD1_2711 NC_008209.1 2581628 2583958 R sensor kinase-like protein complement(2581628..2583958) Roseobacter denitrificans OCh 114 4196178 YP_682937.1 CDS RD1_2712 NC_008209.1 2584031 2585191 R NOL1/NOP2/sun family protein complement(2584031..2585191) Roseobacter denitrificans OCh 114 4196179 YP_682938.1 CDS guaB NC_008209.1 2585222 2586670 R inosine-5'-monophosphate dehydrogenase complement(2585222..2586670) Roseobacter denitrificans OCh 114 4196180 YP_682939.1 CDS RD1_2715 NC_008209.1 2586831 2587817 D agmatinase 2586831..2587817 Roseobacter denitrificans OCh 114 4196181 YP_682940.1 CDS RD1_2716 NC_008209.1 2587966 2590014 D hypothetical protein 2587966..2590014 Roseobacter denitrificans OCh 114 4196182 YP_682941.1 CDS RD1_2718 NC_008209.1 2590338 2590820 D hypothetical protein 2590338..2590820 Roseobacter denitrificans OCh 114 4196184 YP_682942.1 CDS pgi NC_008209.1 2590817 2592409 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2590817..2592409) Roseobacter denitrificans OCh 114 4196185 YP_682943.1 CDS pgl NC_008209.1 2592406 2593077 R 6-phosphogluconolactonase complement(2592406..2593077) Roseobacter denitrificans OCh 114 4196186 YP_682944.1 CDS zwf NC_008209.1 2593081 2594544 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2593081..2594544) Roseobacter denitrificans OCh 114 4196187 YP_682945.1 CDS RD1_2724 NC_008209.1 2594716 2595663 D radical SAM domain-containing protein 2594716..2595663 Roseobacter denitrificans OCh 114 4196188 YP_682946.1 CDS RD1_2725 NC_008209.1 2595677 2595982 R Usg-like family protein complement(2595677..2595982) Roseobacter denitrificans OCh 114 4196189 YP_682947.1 CDS gyrA NC_008209.1 2596178 2598895 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2596178..2598895 Roseobacter denitrificans OCh 114 4196081 YP_682948.1 CDS cxp NC_008209.1 2599124 2600602 R thermostable carboxypeptidase complement(2599124..2600602) Roseobacter denitrificans OCh 114 4196082 YP_682949.1 CDS RD1_2728 NC_008209.1 2600605 2601753 R cytochrome c oxidase assembly protein complement(2600605..2601753) Roseobacter denitrificans OCh 114 4196083 YP_682950.1 CDS rrm2 NC_008209.1 2601816 2602571 R RNA methyltransferase complement(2601816..2602571) Roseobacter denitrificans OCh 114 4196084 YP_682951.1 CDS thiE NC_008209.1 2602717 2603337 D thiamine-phosphate pyrophosphorylase 2602717..2603337 Roseobacter denitrificans OCh 114 4196085 YP_682952.1 CDS RD1_2731 NC_008209.1 2603340 2604533 R hypothetical protein complement(2603340..2604533) Roseobacter denitrificans OCh 114 4196086 YP_682953.1 CDS RD1_2732 NC_008209.1 2604532 2605344 D hypothetical protein 2604532..2605344 Roseobacter denitrificans OCh 114 4196087 YP_682954.1 CDS RD1_2733 NC_008209.1 2605396 2606289 D pfkB family kinase 2605396..2606289 Roseobacter denitrificans OCh 114 4196088 YP_682955.1 CDS RD1_2734 NC_008209.1 2606286 2607218 D hypothetical protein 2606286..2607218 Roseobacter denitrificans OCh 114 4196089 YP_682956.1 CDS RD1_2735 NC_008209.1 2607300 2608016 D hypothetical protein 2607300..2608016 Roseobacter denitrificans OCh 114 4196090 YP_682957.1 CDS RD1_2736 NC_008209.1 2608017 2609054 R patatin family phospholipase complement(2608017..2609054) Roseobacter denitrificans OCh 114 4196091 YP_682958.1 CDS bdhA NC_008209.1 2609130 2609915 R D-beta-hydroxybutyrate dehydrogenase complement(2609130..2609915) Roseobacter denitrificans OCh 114 4196092 YP_682959.1 CDS RD1_2740 NC_008209.1 2609934 2610074 R hypothetical protein complement(2609934..2610074) Roseobacter denitrificans OCh 114 4196093 YP_682960.1 CDS RD1_2741 NC_008209.1 2610248 2612065 D ABC transporter substrate-binding protein 2610248..2612065 Roseobacter denitrificans OCh 114 4196094 YP_682961.1 CDS RD1_2742 NC_008209.1 2612066 2612689 R transcriptional regulator complement(2612066..2612689) Roseobacter denitrificans OCh 114 4196095 YP_682962.1 CDS RD1_2743 NC_008209.1 2612755 2614287 D hypothetical protein 2612755..2614287 Roseobacter denitrificans OCh 114 4196096 YP_682963.1 CDS RD1_2744 NC_008209.1 2614265 2614906 D DSBA-like thioredoxin domain-containing protein 2614265..2614906 Roseobacter denitrificans OCh 114 4196097 YP_682964.1 CDS RD1_2745 NC_008209.1 2615032 2616252 D MFS permease 2615032..2616252 Roseobacter denitrificans OCh 114 4196098 YP_682965.1 CDS mfd NC_008209.1 2616249 2619713 R transcription-repair coupling factor complement(2616249..2619713) Roseobacter denitrificans OCh 114 4196099 YP_682966.1 CDS RD1_2747 NC_008209.1 2619747 2620274 R hypothetical protein complement(2619747..2620274) Roseobacter denitrificans OCh 114 4195907 YP_682967.1 CDS hemB NC_008209.1 2620395 2621393 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2620395..2621393 Roseobacter denitrificans OCh 114 4195908 YP_682968.1 CDS RD1_2750 NC_008209.1 2621504 2622070 D hypothetical protein 2621504..2622070 Roseobacter denitrificans OCh 114 4195909 YP_682969.1 CDS RD1_2751 NC_008209.1 2622120 2622992 R 3-hydroxyisobutyrate dehydrogenase complement(2622120..2622992) Roseobacter denitrificans OCh 114 4195910 YP_682970.1 CDS acy NC_008209.1 2623092 2625557 D penicillin acylase 2623092..2625557 Roseobacter denitrificans OCh 114 4195911 YP_682971.1 CDS RD1_2753 NC_008209.1 2625558 2626121 D RNA pseudouridylate synthase 2625558..2626121 Roseobacter denitrificans OCh 114 4195912 YP_682972.1 CDS hflX NC_008209.1 2626122 2627420 R GTP-binding protein HflX complement(2626122..2627420) Roseobacter denitrificans OCh 114 4195913 YP_682973.1 CDS hfq NC_008209.1 2627417 2627656 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(2627417..2627656) Roseobacter denitrificans OCh 114 4195914 YP_682974.1 CDS trkH-2 NC_008209.1 2627785 2629338 R Trk system potassium uptake protein complement(2627785..2629338) Roseobacter denitrificans OCh 114 4195915 YP_682975.1 CDS trkA NC_008209.1 2629343 2630719 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(2629343..2630719) Roseobacter denitrificans OCh 114 4195916 YP_682976.1 CDS RD1_2758 NC_008209.1 2630758 2631294 D hypothetical protein 2630758..2631294 Roseobacter denitrificans OCh 114 4195917 YP_682977.1 CDS RD1_2759 NC_008209.1 2631348 2632385 D hypothetical protein 2631348..2632385 Roseobacter denitrificans OCh 114 4195918 YP_682978.1 CDS ntrX NC_008209.1 2632469 2633881 R nitrogen assimilation regulatory protein complement(2632469..2633881) Roseobacter denitrificans OCh 114 4195919 YP_682979.1 CDS ntrY NC_008209.1 2633874 2636132 R nitrogen regulation protein ntrY complement(2633874..2636132) Roseobacter denitrificans OCh 114 4195920 YP_682980.1 CDS ntrC NC_008209.1 2636234 2637598 R nitrogen regulation protein complement(2636234..2637598) Roseobacter denitrificans OCh 114 4195921 YP_682981.1 CDS ntrB NC_008209.1 2637611 2638690 R nitrogen regulation protein NtrB complement(2637611..2638690) Roseobacter denitrificans OCh 114 4195922 YP_682982.1 CDS RD1_2765 NC_008209.1 2638687 2639670 R tRNA-dihydrouridine synthase complement(2638687..2639670) Roseobacter denitrificans OCh 114 4195923 YP_682983.1 CDS ispD NC_008209.1 2639848 2640513 D 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2639848..2640513 Roseobacter denitrificans OCh 114 4195924 YP_682984.1 CDS ispF NC_008209.1 2640503 2640982 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2640503..2640982 Roseobacter denitrificans OCh 114 4195925 YP_682985.1 CDS pgpA NC_008209.1 2640979 2641473 D phosphatidylglycerophosphatase A 2640979..2641473 Roseobacter denitrificans OCh 114 4195926 YP_682986.1 CDS cinA NC_008209.1 2641475 2641942 D competence/damage-inducible protein CinA 2641475..2641942 Roseobacter denitrificans OCh 114 4195520 YP_682987.1 CDS RD1_2770 NC_008209.1 2641939 2642397 R hypothetical protein complement(2641939..2642397) Roseobacter denitrificans OCh 114 4195521 YP_682988.1 CDS hpt NC_008209.1 2642466 2643011 D hypoxanthine phosphoribosyltransferase 2642466..2643011 Roseobacter denitrificans OCh 114 4195522 YP_682989.1 CDS RD1_2772 NC_008209.1 2643076 2643324 R hypothetical protein complement(2643076..2643324) Roseobacter denitrificans OCh 114 4195523 YP_682990.1 CDS lipA NC_008209.1 2643393 2644346 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2643393..2644346) Roseobacter denitrificans OCh 114 4195524 YP_682991.1 CDS RD1_2774 NC_008209.1 2644444 2645055 R hypothetical protein complement(2644444..2645055) Roseobacter denitrificans OCh 114 4195525 YP_682992.1 CDS RD1_2775 NC_008209.1 2645245 2646429 R hypothetical protein complement(2645245..2646429) Roseobacter denitrificans OCh 114 4195526 YP_682993.1 CDS RD1_2776 NC_008209.1 2646693 2647043 D hypothetical protein 2646693..2647043 Roseobacter denitrificans OCh 114 4195527 YP_682994.1 CDS RD1_2777 NC_008209.1 2647036 2648619 R trimethylamine methyltransferase family protein complement(2647036..2648619) Roseobacter denitrificans OCh 114 4195528 YP_682995.1 CDS guaA NC_008209.1 2648777 2650345 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2648777..2650345 Roseobacter denitrificans OCh 114 4195529 YP_682996.1 CDS RD1_2779 NC_008209.1 2650386 2651249 D hypothetical protein 2650386..2651249 Roseobacter denitrificans OCh 114 4195530 YP_682997.1 CDS RD1_2780 NC_008209.1 2651383 2652504 D long-chain fatty acid protein 2651383..2652504 Roseobacter denitrificans OCh 114 4195531 YP_682998.1 CDS RD1_2781 NC_008209.1 2652517 2652615 D hypothetical protein 2652517..2652615 Roseobacter denitrificans OCh 114 4195532 YP_682999.1 CDS RD1_2782 NC_008209.1 2652612 2653523 D transmembrane drug/metabolite transporter family protein 2652612..2653523 Roseobacter denitrificans OCh 114 4195533 YP_683000.1 CDS RD1_2783 NC_008209.1 2653601 2654449 D hypothetical protein 2653601..2654449 Roseobacter denitrificans OCh 114 4195534 YP_683001.1 CDS metA NC_008209.1 2654541 2655458 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 2654541..2655458 Roseobacter denitrificans OCh 114 4195535 YP_683002.1 CDS RD1_2785 NC_008209.1 2655442 2656422 D hydrolase 2655442..2656422 Roseobacter denitrificans OCh 114 4195536 YP_683003.1 CDS RD1_2786 NC_008209.1 2656471 2657340 D polyphosphate kinase 2656471..2657340 Roseobacter denitrificans OCh 114 4195537 YP_683004.1 CDS RD1_2787 NC_008209.1 2657300 2657956 D TetR family transcriptional regulator 2657300..2657956 Roseobacter denitrificans OCh 114 4195538 YP_683005.1 CDS RD1_2789 NC_008209.1 2658347 2658961 D ExoD family exopolysaccharide synthesis protein 2658347..2658961 Roseobacter denitrificans OCh 114 4195928 YP_683006.1 CDS RD1_2790 NC_008209.1 2658946 2659413 D disulfide bond formation protein 2658946..2659413 Roseobacter denitrificans OCh 114 4195929 YP_683007.1 CDS RD1_2791 NC_008209.1 2659504 2660664 R monooxygenase complement(2659504..2660664) Roseobacter denitrificans OCh 114 4195930 YP_683008.1 CDS dksA NC_008209.1 2660735 2661157 R dnaK suppressor protein complement(2660735..2661157) Roseobacter denitrificans OCh 114 4195931 YP_683009.1 CDS RD1_2793 NC_008209.1 2661301 2662164 D AAA ATPase 2661301..2662164 Roseobacter denitrificans OCh 114 4195932 YP_683010.1 CDS RD1_2794 NC_008209.1 2662278 2662733 D acetyltransferase 2662278..2662733 Roseobacter denitrificans OCh 114 4195933 YP_683011.1 CDS RD1_2795 NC_008209.1 2662730 2664094 D hypothetical protein 2662730..2664094 Roseobacter denitrificans OCh 114 4195934 YP_683012.1 CDS RD1_2796 NC_008209.1 2664329 2665516 D hypothetical protein 2664329..2665516 Roseobacter denitrificans OCh 114 4195935 YP_683013.1 CDS RD1_2797 NC_008209.1 2665596 2666291 D M48 family peptidase 2665596..2666291 Roseobacter denitrificans OCh 114 4195936 YP_683014.1 CDS RD1_2798 NC_008209.1 2666472 2667011 R hypothetical protein complement(2666472..2667011) Roseobacter denitrificans OCh 114 4195937 YP_683015.1 CDS RD1_2799 NC_008209.1 2667016 2668239 R hypothetical protein complement(2667016..2668239) Roseobacter denitrificans OCh 114 4195938 YP_683016.1 CDS RD1_2801 NC_008209.1 2668334 2668603 R hypothetical protein complement(2668334..2668603) Roseobacter denitrificans OCh 114 4195939 YP_683017.1 CDS glnE NC_008209.1 2668600 2671392 R glutamate-ammonia-ligase adenylyltransferase complement(2668600..2671392) Roseobacter denitrificans OCh 114 4195940 YP_683018.1 CDS RD1_2803 NC_008209.1 2671669 2672088 D hypothetical protein 2671669..2672088 Roseobacter denitrificans OCh 114 4195941 YP_683019.1 CDS RD1_2804 NC_008209.1 2672155 2672595 D RD1_D family protein 2672155..2672595 Roseobacter denitrificans OCh 114 4195942 YP_683020.1 CDS ate NC_008209.1 2672621 2673481 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2672621..2673481 Roseobacter denitrificans OCh 114 4195943 YP_683021.1 CDS RD1_2806 NC_008209.1 2673622 2675976 R TRAP C4-dicarboxylate transport system permease DctM complement(2673622..2675976) Roseobacter denitrificans OCh 114 4195944 YP_683022.1 CDS RD1_2807 NC_008209.1 2676039 2676716 R hypothetical protein complement(2676039..2676716) Roseobacter denitrificans OCh 114 4195945 YP_683023.1 CDS RD1_2809 NC_008209.1 2677095 2678183 R mannitol ABC transporter substrate-binding protein complement(2677095..2678183) Roseobacter denitrificans OCh 114 4195579 YP_683024.1 CDS degS NC_008209.1 2678435 2679868 D sensor protein degS 2678435..2679868 Roseobacter denitrificans OCh 114 4195580 YP_683025.1 CDS degU NC_008209.1 2679865 2680515 D transcription regulatory protein degU 2679865..2680515 Roseobacter denitrificans OCh 114 4195581 YP_683026.1 CDS ilvB NC_008209.1 2680972 2682723 D acetolactate synthase 3 catalytic subunit 2680972..2682723 Roseobacter denitrificans OCh 114 4195582 YP_683027.1 CDS ilvH NC_008209.1 2683020 2683580 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2683020..2683580 Roseobacter denitrificans OCh 114 4195583 YP_683028.1 CDS RD1_2814 NC_008209.1 2683598 2683930 R hypothetical protein complement(2683598..2683930) Roseobacter denitrificans OCh 114 4195584 YP_683029.1 CDS RD1_2815 NC_008209.1 2684165 2684962 D DNA-binding protein 2684165..2684962 Roseobacter denitrificans OCh 114 4195585 YP_683030.1 CDS RD1_2816 NC_008209.1 2685068 2686228 D Rieske (2Fe-2S) domain-containing protein 2685068..2686228 Roseobacter denitrificans OCh 114 4195586 YP_683031.1 CDS RD1_2817 NC_008209.1 2686228 2686443 D hypothetical protein 2686228..2686443 Roseobacter denitrificans OCh 114 4195587 YP_683032.1 CDS RD1_2818 NC_008209.1 2686539 2687300 R hypothetical protein complement(2686539..2687300) Roseobacter denitrificans OCh 114 4195588 YP_683033.1 CDS prfB NC_008209.1 2687396 2688520 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(2687396..2688520) Roseobacter denitrificans OCh 114 4195589 YP_683034.1 CDS mrcA NC_008209.1 2688606 2691161 R penicillin-binding protein 1A complement(2688606..2691161) Roseobacter denitrificans OCh 114 4195590 YP_683035.1 CDS amiC NC_008209.1 2691254 2692471 R N-acetylmuramoyl-L-alanine amidase complement(2691254..2692471) Roseobacter denitrificans OCh 114 4195591 YP_683036.1 CDS aspB NC_008209.1 2692533 2693675 R aspartate aminotransferase complement(2692533..2693675) Roseobacter denitrificans OCh 114 4195592 YP_683037.1 CDS RD1_2823 NC_008209.1 2693674 2695029 D M48 family peptidase 2693674..2695029 Roseobacter denitrificans OCh 114 4195593 YP_683038.1 CDS RD1_2824 NC_008209.1 2695033 2695782 D outer membrane protein 2695033..2695782 Roseobacter denitrificans OCh 114 4195594 YP_683039.1 CDS ispG NC_008209.1 2695792 2696952 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2695792..2696952) Roseobacter denitrificans OCh 114 4195595 YP_683040.1 CDS RD1_2826 NC_008209.1 2697009 2698253 R hypothetical protein complement(2697009..2698253) Roseobacter denitrificans OCh 114 4195596 YP_683041.1 CDS hemA NC_008209.1 2698389 2699612 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(2698389..2699612) Roseobacter denitrificans OCh 114 4195597 YP_683042.1 CDS RD1_2828 NC_008209.1 2699808 2701178 D hypothetical protein 2699808..2701178 Roseobacter denitrificans OCh 114 4195285 YP_683043.1 CDS dehH1 NC_008209.1 2701178 2702050 D haloacetate dehalogenase H-1 2701178..2702050 Roseobacter denitrificans OCh 114 4195286 YP_683044.1 CDS RD1_2831 NC_008209.1 2702390 2703328 R pirin complement(2702390..2703328) Roseobacter denitrificans OCh 114 4195288 YP_683045.1 CDS RD1_2832 NC_008209.1 2703481 2703855 R hypothetical protein complement(2703481..2703855) Roseobacter denitrificans OCh 114 4195289 YP_683046.1 CDS RD1_2834 NC_008209.1 2704687 2705256 R phosphoglycerate mutase complement(2704687..2705256) Roseobacter denitrificans OCh 114 4195291 YP_683047.1 CDS RD1_2835 NC_008209.1 2705465 2705767 R hypothetical protein complement(2705465..2705767) Roseobacter denitrificans OCh 114 4195292 YP_683048.1 CDS RD1_2836 NC_008209.1 2706208 2706432 D hypothetical protein 2706208..2706432 Roseobacter denitrificans OCh 114 4195293 YP_683049.1 CDS RD1_2837 NC_008209.1 2706579 2707004 D hypothetical protein 2706579..2707004 Roseobacter denitrificans OCh 114 4195294 YP_683050.1 CDS RD1_2838 NC_008209.1 2707021 2708169 R hypothetical protein complement(2707021..2708169) Roseobacter denitrificans OCh 114 4195295 YP_683051.1 CDS RD1_2839 NC_008209.1 2708295 2710979 R sensor histidine kinase complement(2708295..2710979) Roseobacter denitrificans OCh 114 4195296 YP_683052.1 CDS RD1_2840 NC_008209.1 2710985 2711266 R hypothetical protein complement(2710985..2711266) Roseobacter denitrificans OCh 114 4195297 YP_683053.1 CDS RD1_2841 NC_008209.1 2711271 2711654 R response regulator receiver domain-containing protein complement(2711271..2711654) Roseobacter denitrificans OCh 114 4195298 YP_683054.1 CDS RD1_2842 NC_008209.1 2711835 2713124 R transcriptional regulator complement(2711835..2713124) Roseobacter denitrificans OCh 114 4195299 YP_683055.1 CDS RD1_2843 NC_008209.1 2713364 2714716 D branched-chain amino acid ABC transporter substrate-binding protein 2713364..2714716 Roseobacter denitrificans OCh 114 4195300 YP_683056.1 CDS RD1_2844 NC_008209.1 2714804 2715835 D branched-chain amino acid ABC transporter permease 2714804..2715835 Roseobacter denitrificans OCh 114 4195301 YP_683057.1 CDS RD1_2845 NC_008209.1 2715840 2717039 D branched-chain amino acid ABC transporter permease 2715840..2717039 Roseobacter denitrificans OCh 114 4195302 YP_683058.1 CDS RD1_2846 NC_008209.1 2717052 2717816 D branched-chain amino acid ABC transporter ATP-binding protein 2717052..2717816 Roseobacter denitrificans OCh 114 4196043 YP_683059.1 CDS RD1_2847 NC_008209.1 2717829 2718584 D branched-chain amino acid ABC transporter ATP-binding protein 2717829..2718584 Roseobacter denitrificans OCh 114 4196044 YP_683060.1 CDS RD1_2848 NC_008209.1 2718710 2719468 R pyrroline-5-carboxylate reductase complement(2718710..2719468) Roseobacter denitrificans OCh 114 4196045 YP_683061.1 CDS RD1_2849 NC_008209.1 2719557 2721062 R AMP-binding protein complement(2719557..2721062) Roseobacter denitrificans OCh 114 4196046 YP_683062.1 CDS accB NC_008209.1 2721214 2721696 D acetyl-CoA carboxylase, biotin carboxyl carrier protein 2721214..2721696 Roseobacter denitrificans OCh 114 4196047 YP_683063.1 CDS accC NC_008209.1 2721708 2723060 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2721708..2723060 Roseobacter denitrificans OCh 114 4196048 YP_683064.1 CDS aat NC_008209.1 2723073 2723705 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2723073..2723705 Roseobacter denitrificans OCh 114 4196049 YP_683065.1 CDS RD1_2853 NC_008209.1 2723669 2724028 R hypothetical protein complement(2723669..2724028) Roseobacter denitrificans OCh 114 4196050 YP_683066.1 CDS RD1_2854 NC_008209.1 2724025 2724471 R mce-like protein complement(2724025..2724471) Roseobacter denitrificans OCh 114 4196051 YP_683067.1 CDS RD1_2855 NC_008209.1 2724477 2724860 R Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase complement(2724477..2724860) Roseobacter denitrificans OCh 114 4196052 YP_683068.1 CDS RD1_2856 NC_008209.1 2724942 2725304 R endoribonuclease L-PSP family protein complement(2724942..2725304) Roseobacter denitrificans OCh 114 4196053 YP_683069.1 CDS clpX NC_008209.1 2725435 2726700 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2725435..2726700) Roseobacter denitrificans OCh 114 4196054 YP_683070.1 CDS clpP NC_008209.1 2726839 2727465 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2726839..2727465) Roseobacter denitrificans OCh 114 4196055 YP_683071.1 CDS RD1_2859 NC_008209.1 2727412 2728818 D deoxyribodipyrimidine photo-lyase 2727412..2728818 Roseobacter denitrificans OCh 114 4196056 YP_683072.1 CDS lacK NC_008209.1 2729068 2730126 R lactose ABC transporter ATP-binding protein complement(2729068..2730126) Roseobacter denitrificans OCh 114 4196057 YP_683073.1 CDS RD1_2861 NC_008209.1 2730131 2730922 R IclR family transcriptional regulator complement(2730131..2730922) Roseobacter denitrificans OCh 114 4196058 YP_683074.1 CDS RD1_2862 NC_008209.1 2731154 2732413 D ABC transporter substrate-binding protein 2731154..2732413 Roseobacter denitrificans OCh 114 4196059 YP_683075.1 CDS RD1_2863 NC_008209.1 2732512 2733438 D sugar ABC transporter permease 2732512..2733438 Roseobacter denitrificans OCh 114 4196060 YP_683076.1 CDS RD1_2864 NC_008209.1 2733507 2734355 D ABC transporter permease 2733507..2734355 Roseobacter denitrificans OCh 114 4196061 YP_683077.1 CDS rafA NC_008209.1 2734352 2736436 D alpha-galactosidase 2734352..2736436 Roseobacter denitrificans OCh 114 4196023 YP_683078.1 CDS RD1_2866 NC_008209.1 2736537 2737307 D oxidoreductase 2736537..2737307 Roseobacter denitrificans OCh 114 4196024 YP_683079.1 CDS dgoK NC_008209.1 2737315 2738220 D 2-dehydro-3-deoxygalactonokinase 2737315..2738220 Roseobacter denitrificans OCh 114 4196025 YP_683080.1 CDS dgoA NC_008209.1 2738217 2738822 D catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 2738217..2738822 Roseobacter denitrificans OCh 114 4196026 YP_683081.1 CDS bgaT NC_008209.1 2738962 2740872 D beta-galactosidase 2738962..2740872 Roseobacter denitrificans OCh 114 4196027 YP_683082.1 CDS pgm NC_008209.1 2740877 2742508 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2740877..2742508) Roseobacter denitrificans OCh 114 4196028 YP_683083.1 CDS malQ NC_008209.1 2742505 2744502 R 4-alpha-glucanotransferase complement(2742505..2744502) Roseobacter denitrificans OCh 114 4196029 YP_683084.1 CDS glgX NC_008209.1 2744492 2746588 R glycogen debranching protein complement(2744492..2746588) Roseobacter denitrificans OCh 114 4196030 YP_683085.1 CDS RD1_2873 NC_008209.1 2746598 2748037 R glycogen synthase complement(2746598..2748037) Roseobacter denitrificans OCh 114 4196031 YP_683086.1 CDS glgC NC_008209.1 2748039 2749298 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(2748039..2749298) Roseobacter denitrificans OCh 114 4196032 YP_683087.1 CDS glgB NC_008209.1 2749344 2751539 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2749344..2751539) Roseobacter denitrificans OCh 114 4196033 YP_683088.1 CDS glgP NC_008209.1 2751553 2753976 R glycogen phosphorylase complement(2751553..2753976) Roseobacter denitrificans OCh 114 4196034 YP_683089.1 CDS frk NC_008209.1 2754068 2755000 R fructokinase complement(2754068..2755000) Roseobacter denitrificans OCh 114 4196035 YP_683090.1 CDS eda NC_008209.1 2755032 2755673 R KHG/KDPG aldolase complement(2755032..2755673) Roseobacter denitrificans OCh 114 4196036 YP_683091.1 CDS edd NC_008209.1 2755689 2757494 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2755689..2757494) Roseobacter denitrificans OCh 114 4196037 YP_683092.1 CDS gap NC_008209.1 2757540 2758547 R glyceraldehyde-3-phosphate dehydrogenase complement(2757540..2758547) Roseobacter denitrificans OCh 114 4196038 YP_683093.1 CDS RD1_2882 NC_008209.1 2758712 2759890 R alcohol dehydrogenase complement(2758712..2759890) Roseobacter denitrificans OCh 114 4196039 YP_683094.1 CDS glpK NC_008209.1 2759871 2761358 R glycerol kinase complement(2759871..2761358) Roseobacter denitrificans OCh 114 4196040 YP_683095.1 CDS glpD NC_008209.1 2761375 2762973 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(2761375..2762973) Roseobacter denitrificans OCh 114 4196041 YP_683096.1 CDS glpR NC_008209.1 2763165 2763926 D glycerol-3-phosphate regulon repressor 2763165..2763926 Roseobacter denitrificans OCh 114 4196042 YP_683097.1 CDS RD1_2887 NC_008209.1 2764163 2765077 R hypothetical protein complement(2764163..2765077) Roseobacter denitrificans OCh 114 4196062 YP_683098.1 CDS RD1_2888 NC_008209.1 2765074 2767131 R hypothetical protein complement(2765074..2767131) Roseobacter denitrificans OCh 114 4196063 YP_683099.1 CDS RD1_2889 NC_008209.1 2767649 2768626 R ornithine cyclodeaminase/mu-crystallin family protein complement(2767649..2768626) Roseobacter denitrificans OCh 114 4196064 YP_683100.1 CDS RD1_2890 NC_008209.1 2768708 2769871 R threonine aldolase complement(2768708..2769871) Roseobacter denitrificans OCh 114 4196065 YP_683101.1 CDS srr NC_008209.1 2769884 2770855 R serine racemase complement(2769884..2770855) Roseobacter denitrificans OCh 114 4196066 YP_683102.1 CDS sgaA NC_008209.1 2770866 2772056 R serine--glyoxylate aminotransferase complement(2770866..2772056) Roseobacter denitrificans OCh 114 4196067 YP_683103.1 CDS iclR NC_008209.1 2772262 2773119 D acetate operon repressor 2772262..2773119 Roseobacter denitrificans OCh 114 4196068 YP_683104.1 CDS RD1_2894 NC_008209.1 2773243 2773914 D transcriptional regulator 2773243..2773914 Roseobacter denitrificans OCh 114 4196069 YP_683105.1 CDS fdhI NC_008209.1 2774151 2775341 R formate dehydrogenase subunit gamma complement(2774151..2775341) Roseobacter denitrificans OCh 114 4196070 YP_683106.1 CDS fdhB NC_008209.1 2775421 2776017 R formate dehydrogenase Fe-S subunit complement(2775421..2776017) Roseobacter denitrificans OCh 114 4196071 YP_683107.1 CDS fdhA NC_008209.1 2776033 2778915 R formate dehydrogenase subunit alpha complement(2776033..2778915) Roseobacter denitrificans OCh 114 4196072 YP_683108.1 CDS RD1_2898 NC_008209.1 2779010 2779201 R twin-arginine translocation pathway signal sequence domain-containing protein complement(2779010..2779201) Roseobacter denitrificans OCh 114 4196073 YP_683109.1 CDS torD NC_008209.1 2779253 2779861 R chaperone TorD complement(2779253..2779861) Roseobacter denitrificans OCh 114 4196074 YP_683110.1 CDS RD1_2900 NC_008209.1 2779858 2780463 R hypothetical protein complement(2779858..2780463) Roseobacter denitrificans OCh 114 4196075 YP_683111.1 CDS RD1_2901 NC_008209.1 2780460 2781026 R hypothetical protein complement(2780460..2781026) Roseobacter denitrificans OCh 114 4196076 YP_683112.1 CDS RD1_2902 NC_008209.1 2781358 2783313 D (Fe-S)-binding protein 2781358..2783313 Roseobacter denitrificans OCh 114 4196077 YP_683113.1 CDS RD1_2903 NC_008209.1 2783307 2784110 R hypothetical protein complement(2783307..2784110) Roseobacter denitrificans OCh 114 4196078 YP_683114.1 CDS RD1_2904 NC_008209.1 2784110 2784346 R hypothetical protein complement(2784110..2784346) Roseobacter denitrificans OCh 114 4196079 YP_683115.1 CDS RD1_2905 NC_008209.1 2784137 2784334 D hypothetical protein 2784137..2784334 Roseobacter denitrificans OCh 114 4196080 YP_683116.1 CDS RD1_2906 NC_008209.1 2784334 2785401 D hypothetical protein 2784334..2785401 Roseobacter denitrificans OCh 114 4195808 YP_683117.1 CDS RD1_2907 NC_008209.1 2785398 2786102 D hypothetical protein 2785398..2786102 Roseobacter denitrificans OCh 114 4195809 YP_683118.1 CDS RD1_2908 NC_008209.1 2786099 2786593 D hypothetical protein 2786099..2786593 Roseobacter denitrificans OCh 114 4195810 YP_683119.1 CDS RD1_2909 NC_008209.1 2786597 2787403 R tungstate ABC transporter tungstate-binding protein complement(2786597..2787403) Roseobacter denitrificans OCh 114 4195811 YP_683120.1 CDS RD1_2910 NC_008209.1 2787400 2788110 R tungstate ABC transporter ATP-binding protein complement(2787400..2788110) Roseobacter denitrificans OCh 114 4195812 YP_683121.1 CDS RD1_2911 NC_008209.1 2788110 2788832 R tungstate ABC transporter permease complement(2788110..2788832) Roseobacter denitrificans OCh 114 4195813 YP_683122.1 CDS RD1_2912 NC_008209.1 2789041 2789784 D hypothetical protein 2789041..2789784 Roseobacter denitrificans OCh 114 4195814 YP_683123.1 CDS modA NC_008209.1 2789801 2790649 D molybdate ABC transporter substrate-binding protein 2789801..2790649 Roseobacter denitrificans OCh 114 4195815 YP_683124.1 CDS modB NC_008209.1 2790658 2791350 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 2790658..2791350 Roseobacter denitrificans OCh 114 4195816 YP_683125.1 CDS modC NC_008209.1 2791347 2792444 D molybdate ABC transporter ATP-binding protein 2791347..2792444 Roseobacter denitrificans OCh 114 4195817 YP_683126.1 CDS RD1_2916 NC_008209.1 2792452 2793120 R hypothetical protein complement(2792452..2793120) Roseobacter denitrificans OCh 114 4195818 YP_683127.1 CDS RD1_2917 NC_008209.1 2793198 2794658 R hypothetical protein complement(2793198..2794658) Roseobacter denitrificans OCh 114 4195819 YP_683128.1 CDS adhE NC_008209.1 2794691 2796094 R aldehyde-alcohol dehydrogenase complement(2794691..2796094) Roseobacter denitrificans OCh 114 4195820 YP_683129.1 CDS RD1_2920 NC_008209.1 2796156 2797124 R hypothetical protein complement(2796156..2797124) Roseobacter denitrificans OCh 114 4195821 YP_683130.1 CDS RD1_2921 NC_008209.1 2797170 2797640 R hypothetical protein complement(2797170..2797640) Roseobacter denitrificans OCh 114 4195822 YP_683131.1 CDS RD1_2922 NC_008209.1 2797637 2799148 R hypothetical protein complement(2797637..2799148) Roseobacter denitrificans OCh 114 4195823 YP_683132.1 CDS RD1_2923 NC_008209.1 2799241 2800278 D LacI family transcriptional regulator 2799241..2800278 Roseobacter denitrificans OCh 114 4195824 YP_683133.1 CDS fabD NC_008209.1 2800286 2801329 R malonyl CoA-ACP transacylase complement(2800286..2801329) Roseobacter denitrificans OCh 114 4195825 YP_683134.1 CDS pdhB NC_008209.1 2801326 2803515 R pyruvate dehydrogenase E1 subunit beta complement(2801326..2803515) Roseobacter denitrificans OCh 114 4195826 YP_683135.1 CDS RD1_2927 NC_008209.1 2803633 2806986 R hypothetical protein complement(2803633..2806986) Roseobacter denitrificans OCh 114 4195827 YP_683136.1 CDS RD1_2928 NC_008209.1 2807072 2808340 R hypothetical protein complement(2807072..2808340) Roseobacter denitrificans OCh 114 4195751 YP_683137.1 CDS RD1_2929 NC_008209.1 2808517 2808678 R hypothetical protein complement(2808517..2808678) Roseobacter denitrificans OCh 114 4195752 YP_683138.1 CDS opuAC NC_008209.1 2808659 2809627 D glycine betaine transporter substrate-binding protein 2808659..2809627 Roseobacter denitrificans OCh 114 4195753 YP_683139.1 CDS opuAB NC_008209.1 2809700 2810734 D glycine betaine transporter permease 2809700..2810734 Roseobacter denitrificans OCh 114 4195754 YP_683140.1 CDS opuAA NC_008209.1 2810745 2811773 D glycine betaine transporter ATP-binding protein 2810745..2811773 Roseobacter denitrificans OCh 114 4195755 YP_683141.1 CDS uxuB NC_008209.1 2811765 2813216 R D-mannonate oxidoreductase complement(2811765..2813216) Roseobacter denitrificans OCh 114 4195756 YP_683142.1 CDS uxaC NC_008209.1 2813213 2814619 R catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase complement(2813213..2814619) Roseobacter denitrificans OCh 114 4195757 YP_683143.1 CDS RD1_2935 NC_008209.1 2814672 2815574 R glycerol-3-phosphate ABC transporter permease complement(2814672..2815574) Roseobacter denitrificans OCh 114 4195758 YP_683144.1 CDS ugpC NC_008209.1 2815519 2816595 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(2815519..2816595) Roseobacter denitrificans OCh 114 4195759 YP_683145.1 CDS ugpE NC_008209.1 2816595 2817440 R glycerol-3-phosphate ABC transporter permease complement(2816595..2817440) Roseobacter denitrificans OCh 114 4195760 YP_683146.1 CDS ugpA NC_008209.1 2817440 2818318 R glycerol-3-phosphate ABC transporter permease complement(2817440..2818318) Roseobacter denitrificans OCh 114 4195761 YP_683147.1 CDS upgB NC_008209.1 2818392 2819687 R glycerol-3-phosphate ABC transporter substrate-binding protein complement(2818392..2819687) Roseobacter denitrificans OCh 114 4195762 YP_683148.1 CDS RD1_2940 NC_008209.1 2819870 2820400 R cyclic phosphodiesterase complement(2819870..2820400) Roseobacter denitrificans OCh 114 4195763 YP_683149.1 CDS cysK NC_008209.1 2820572 2821651 D O-acetylserine sulfhydrylase 2820572..2821651 Roseobacter denitrificans OCh 114 4195764 YP_683150.1 CDS RD1_2943 NC_008209.1 2821685 2822689 R iron ABC transporter substrate-binding protein complement(2821685..2822689) Roseobacter denitrificans OCh 114 4195765 YP_683151.1 CDS RD1_2944 NC_008209.1 2822668 2824032 R two-component sensor protein complement(2822668..2824032) Roseobacter denitrificans OCh 114 4195766 YP_683152.1 CDS tctD NC_008209.1 2824025 2824690 R DNA-binding response regulator complement(2824025..2824690) Roseobacter denitrificans OCh 114 4195767 YP_683153.1 CDS RD1_2946 NC_008209.1 2824799 2825785 D hypothetical protein 2824799..2825785 Roseobacter denitrificans OCh 114 4195768 YP_683154.1 CDS RD1_2947 NC_008209.1 2825858 2826343 D hypothetical protein 2825858..2826343 Roseobacter denitrificans OCh 114 4195769 YP_683155.1 CDS RD1_2948 NC_008209.1 2826345 2827856 D hypothetical protein 2826345..2827856 Roseobacter denitrificans OCh 114 4195559 YP_683156.1 CDS RD1_2949 NC_008209.1 2827981 2828100 R hypothetical protein complement(2827981..2828100) Roseobacter denitrificans OCh 114 4195560 YP_683157.1 CDS lon NC_008209.1 2828247 2830658 R ATP-dependent protease La complement(2828247..2830658) Roseobacter denitrificans OCh 114 4195561 YP_683158.1 CDS RD1_2951 NC_008209.1 2830857 2831540 R chemoreceptor protein complement(2830857..2831540) Roseobacter denitrificans OCh 114 4195562 YP_683159.1 CDS tgt NC_008209.1 2831666 2832850 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2831666..2832850) Roseobacter denitrificans OCh 114 4195563 YP_683160.1 CDS RD1_2953 NC_008209.1 2832887 2834395 D hypothetical protein 2832887..2834395 Roseobacter denitrificans OCh 114 4195564 YP_683161.1 CDS RD1_2954 NC_008209.1 2834486 2835382 D hypothetical protein 2834486..2835382 Roseobacter denitrificans OCh 114 4195565 YP_683162.1 CDS RD1_2955 NC_008209.1 2835397 2835654 D hypothetical protein 2835397..2835654 Roseobacter denitrificans OCh 114 4195566 YP_683163.1 CDS rimK NC_008209.1 2835732 2837111 D ribosomal protein S6 modification protein 2835732..2837111 Roseobacter denitrificans OCh 114 4195567 YP_683164.1 CDS RD1_2957 NC_008209.1 2837198 2837560 D hypothetical protein 2837198..2837560 Roseobacter denitrificans OCh 114 4195568 YP_683165.1 CDS maa NC_008209.1 2837572 2838138 D maltose O-acetyltransferase 2837572..2838138 Roseobacter denitrificans OCh 114 4195569 YP_683166.1 CDS hesB NC_008209.1 2838162 2838506 D HesB-like iron-sulfur cluster assembly protein 2838162..2838506 Roseobacter denitrificans OCh 114 4195570 YP_683167.1 CDS tpiA NC_008209.1 2838631 2839377 D triosephosphate isomerase 2838631..2839377 Roseobacter denitrificans OCh 114 4195571 YP_683168.1 CDS cyp NC_008209.1 2839430 2840647 D cytochrome P450 2839430..2840647 Roseobacter denitrificans OCh 114 4195572 YP_683169.1 CDS grp NC_008209.1 2840823 2841293 R glutamate uptake regulatory protein complement(2840823..2841293) Roseobacter denitrificans OCh 114 4195573 YP_683170.1 CDS cysG NC_008209.1 2841430 2842857 D siroheme synthase 2841430..2842857 Roseobacter denitrificans OCh 114 4195574 YP_683171.1 CDS RD1_2965 NC_008209.1 2842857 2843162 D hypothetical protein 2842857..2843162 Roseobacter denitrificans OCh 114 4195575 YP_683172.1 CDS cysI NC_008209.1 2843155 2844819 D sulfite reductase 2843155..2844819 Roseobacter denitrificans OCh 114 4195576 YP_683173.1 CDS cysH NC_008209.1 2844809 2845570 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2844809..2845570 Roseobacter denitrificans OCh 114 4195577 YP_683174.1 CDS RD1_2968 NC_008209.1 2845567 2845980 D hypothetical protein 2845567..2845980 Roseobacter denitrificans OCh 114 4195578 YP_683175.1 CDS fpr NC_008209.1 2846062 2846910 D ferredoxin--NADP reductase 2846062..2846910 Roseobacter denitrificans OCh 114 4195598 YP_683176.1 CDS infC NC_008209.1 2847148 2847642 D translation initiation factor IF-3 2847148..2847642 Roseobacter denitrificans OCh 114 4195599 YP_683177.1 CDS RD1_2971 NC_008209.1 2847756 2848778 D hypothetical protein 2847756..2848778 Roseobacter denitrificans OCh 114 4195600 YP_683178.1 CDS coxM NC_008209.1 2848829 2849620 R carbon monoxide dehydrogenase, medium subunit complement(2848829..2849620) Roseobacter denitrificans OCh 114 4195601 YP_683179.1 CDS coxL NC_008209.1 2849721 2852093 R carbon monoxide dehydrogenase, large subunit complement(2849721..2852093) Roseobacter denitrificans OCh 114 4195602 YP_683180.1 CDS coxS NC_008209.1 2852198 2852683 R carbon monoxide dehydrogenase, small subunit complement(2852198..2852683) Roseobacter denitrificans OCh 114 4195603 YP_683181.1 CDS RD1_2975 NC_008209.1 2852791 2853804 R molybdopterin biosynthesis protein complement(2852791..2853804) Roseobacter denitrificans OCh 114 4195604 YP_683182.1 CDS RD1_2976 NC_008209.1 2853801 2854769 R xanthine dehydrogenase accessory factor complement(2853801..2854769) Roseobacter denitrificans OCh 114 4195605 YP_683183.1 CDS RD1_2977 NC_008209.1 2854909 2855145 D BolA family protein 2854909..2855145 Roseobacter denitrificans OCh 114 4195606 YP_683184.1 CDS RD1_2978 NC_008209.1 2855149 2855466 D hypothetical protein 2855149..2855466 Roseobacter denitrificans OCh 114 4195607 YP_683185.1 CDS RD1_2979 NC_008209.1 2855463 2855825 D glutaredoxin-like protein 2855463..2855825 Roseobacter denitrificans OCh 114 4195608 YP_683186.1 CDS RD1_2980 NC_008209.1 2855880 2856272 R hypothetical protein complement(2855880..2856272) Roseobacter denitrificans OCh 114 4195609 YP_683187.1 CDS RD1_2981 NC_008209.1 2856272 2856802 R hypothetical protein complement(2856272..2856802) Roseobacter denitrificans OCh 114 4195610 YP_683188.1 CDS tktA NC_008209.1 2857039 2859084 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2857039..2859084 Roseobacter denitrificans OCh 114 4195611 YP_683189.1 CDS RD1_2983 NC_008209.1 2859331 2860356 R hypothetical protein complement(2859331..2860356) Roseobacter denitrificans OCh 114 4195612 YP_683190.1 CDS gap NC_008209.1 2860544 2861542 D glyceraldehyde-3-phosphate dehydrogenase 2860544..2861542 Roseobacter denitrificans OCh 114 4195613 YP_683191.1 CDS coaD NC_008209.1 2861718 2862218 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2861718..2862218) Roseobacter denitrificans OCh 114 4195614 YP_683192.1 CDS RD1_2986 NC_008209.1 2862305 2862739 R hypothetical protein complement(2862305..2862739) Roseobacter denitrificans OCh 114 4195615 YP_683193.1 CDS RD1_2988 NC_008209.1 2862800 2863696 R LysR family transcriptional regulator complement(2862800..2863696) Roseobacter denitrificans OCh 114 4195616 YP_683194.1 CDS RD1_2989 NC_008209.1 2863641 2863814 R hypothetical protein complement(2863641..2863814) Roseobacter denitrificans OCh 114 4195208 YP_683195.1 CDS mmsA NC_008209.1 2863828 2865327 D methylmalonate-semialdehyde dehydrogenase 2863828..2865327 Roseobacter denitrificans OCh 114 4195209 YP_683196.1 CDS mmsB NC_008209.1 2865473 2867398 D 3-hydroxyisobutyrate dehydrogenase 2865473..2867398 Roseobacter denitrificans OCh 114 4195210 YP_683197.1 CDS RD1_2992 NC_008209.1 2867570 2867713 D hypothetical protein 2867570..2867713 Roseobacter denitrificans OCh 114 4195211 YP_683198.1 CDS uvrA NC_008209.1 2867915 2870773 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(2867915..2870773) Roseobacter denitrificans OCh 114 4195212 YP_683199.1 CDS RD1_2994 NC_008209.1 2871135 2871797 D hypothetical protein 2871135..2871797 Roseobacter denitrificans OCh 114 4195213 YP_683200.1 CDS lpdA NC_008209.1 2871981 2873375 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2871981..2873375) Roseobacter denitrificans OCh 114 4195214 YP_683201.1 CDS RD1_2996 NC_008209.1 2873495 2874079 R hypothetical protein complement(2873495..2874079) Roseobacter denitrificans OCh 114 4195215 YP_683202.1 CDS RD1_2997 NC_008209.1 2874172 2875437 R major facilitator superfamily protein complement(2874172..2875437) Roseobacter denitrificans OCh 114 4195216 YP_683203.1 CDS queA NC_008209.1 2875541 2876596 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2875541..2876596) Roseobacter denitrificans OCh 114 4195217 YP_683204.1 CDS RD1_2999 NC_008209.1 2876607 2879966 R hypothetical protein complement(2876607..2879966) Roseobacter denitrificans OCh 114 4195218 YP_683205.1 CDS bcp NC_008209.1 2880093 2880554 D bacterioferritin comigratory protein 2880093..2880554 Roseobacter denitrificans OCh 114 4195219 YP_683206.1 CDS RD1_3001 NC_008209.1 2880551 2881360 D hypothetical protein 2880551..2881360 Roseobacter denitrificans OCh 114 4195220 YP_683207.1 CDS RD1_3002 NC_008209.1 2881528 2882862 D M24/M37 family peptidase 2881528..2882862 Roseobacter denitrificans OCh 114 4195221 YP_683208.1 CDS RD1_3003 NC_008209.1 2882852 2883346 D hypothetical protein 2882852..2883346 Roseobacter denitrificans OCh 114 4195222 YP_683209.1 CDS RD1_3004 NC_008209.1 2883280 2883423 R hypothetical protein complement(2883280..2883423) Roseobacter denitrificans OCh 114 4195223 YP_683210.1 CDS ppiB NC_008209.1 2883787 2884326 R cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2883787..2884326) Roseobacter denitrificans OCh 114 4195224 YP_683211.1 CDS RD1_3007 NC_008209.1 2884340 2884846 R cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2884340..2884846) Roseobacter denitrificans OCh 114 4195225 YP_683212.1 CDS pgk NC_008209.1 2884976 2886163 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2884976..2886163 Roseobacter denitrificans OCh 114 4195226 YP_683213.1 CDS RD1_3010 NC_008209.1 2886391 2886690 D hypothetical protein 2886391..2886690 Roseobacter denitrificans OCh 114 4195227 YP_683214.1 CDS pdhA NC_008209.1 2886826 2887836 D pyruvate dehydrogenase complex, E1 component subunit alpha 2886826..2887836 Roseobacter denitrificans OCh 114 4195732 YP_683215.1 CDS pdhB NC_008209.1 2887840 2889219 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 2887840..2889219 Roseobacter denitrificans OCh 114 4195733 YP_683216.1 CDS pdhC NC_008209.1 2889231 2890526 D branched-chain alpha-keto acid dehydrogenase subunit E2 2889231..2890526 Roseobacter denitrificans OCh 114 4195734 YP_683217.1 CDS cysE NC_008209.1 2890661 2891482 R serine acetyltransferase complement(2890661..2891482) Roseobacter denitrificans OCh 114 4195735 YP_683218.1 CDS RD1_3016 NC_008209.1 2891585 2895529 R hypothetical protein complement(2891585..2895529) Roseobacter denitrificans OCh 114 4195736 YP_683219.1 CDS RD1_3017 NC_008209.1 2895529 2895975 R hypothetical protein complement(2895529..2895975) Roseobacter denitrificans OCh 114 4195737 YP_683220.1 CDS RD1_3018 NC_008209.1 2895972 2896859 R hypothetical protein complement(2895972..2896859) Roseobacter denitrificans OCh 114 4195738 YP_683221.1 CDS RD1_3019 NC_008209.1 2896859 2897491 R hypothetical protein complement(2896859..2897491) Roseobacter denitrificans OCh 114 4195739 YP_683222.1 CDS RD1_3020 NC_008209.1 2897509 2898171 R hypothetical protein complement(2897509..2898171) Roseobacter denitrificans OCh 114 4195740 YP_683223.1 CDS RD1_3022 NC_008209.1 2898184 2898369 R hypothetical protein complement(2898184..2898369) Roseobacter denitrificans OCh 114 4195741 YP_683224.1 CDS RD1_3023 NC_008209.1 2898366 2898626 R hypothetical protein complement(2898366..2898626) Roseobacter denitrificans OCh 114 4195742 YP_683225.1 CDS RD1_3024 NC_008209.1 2898685 2899098 R hypothetical protein complement(2898685..2899098) Roseobacter denitrificans OCh 114 4195743 YP_683226.1 CDS RD1_3025 NC_008209.1 2899127 2899537 R hypothetical protein complement(2899127..2899537) Roseobacter denitrificans OCh 114 4195744 YP_683227.1 CDS RD1_3026 NC_008209.1 2899534 2899872 R phage head-tail adaptor complement(2899534..2899872) Roseobacter denitrificans OCh 114 4195745 YP_683228.1 CDS RD1_3027 NC_008209.1 2899869 2900462 R hypothetical protein complement(2899869..2900462) Roseobacter denitrificans OCh 114 4195746 YP_683229.1 CDS RD1_3028 NC_008209.1 2900621 2901799 R phage major capsid protein complement(2900621..2901799) Roseobacter denitrificans OCh 114 4195747 YP_683230.1 CDS RD1_3030 NC_008209.1 2901867 2902424 R phage prohead protease complement(2901867..2902424) Roseobacter denitrificans OCh 114 4195748 YP_683231.1 CDS RD1_3031 NC_008209.1 2902458 2902703 R hypothetical protein complement(2902458..2902703) Roseobacter denitrificans OCh 114 4195749 YP_683232.1 CDS RD1_3033 NC_008209.1 2902672 2903850 R phage portal protein complement(2902672..2903850) Roseobacter denitrificans OCh 114 4195750 YP_683233.1 CDS RD1_3034 NC_008209.1 2903999 2905369 R hypothetical protein complement(2903999..2905369) Roseobacter denitrificans OCh 114 4198737 YP_683234.1 CDS RD1_3035 NC_008209.1 2905890 2907056 R hypothetical protein complement(2905890..2907056) Roseobacter denitrificans OCh 114 4198738 YP_683235.1 CDS fabF NC_008209.1 2907056 2908315 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2907056..2908315) Roseobacter denitrificans OCh 114 4198739 YP_683236.1 CDS RD1_3037 NC_008209.1 2908406 2908939 R acetyltransferase complement(2908406..2908939) Roseobacter denitrificans OCh 114 4198740 YP_683237.1 CDS acpP NC_008209.1 2909112 2909345 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2909112..2909345) Roseobacter denitrificans OCh 114 4198741 YP_683238.1 CDS RD1_3039 NC_008209.1 2909595 2910332 R short chain dehydrogenase/reductase family oxidoreductase complement(2909595..2910332) Roseobacter denitrificans OCh 114 4198742 YP_683239.1 CDS fabD NC_008209.1 2910347 2911279 R malonyl CoA-ACP transacylase complement(2910347..2911279) Roseobacter denitrificans OCh 114 4198743 YP_683240.1 CDS RD1_3041 NC_008209.1 2911470 2912669 D cytochrome b561 2911470..2912669 Roseobacter denitrificans OCh 114 4198744 YP_683241.1 CDS RD1_3042 NC_008209.1 2912729 2913307 R hypothetical protein complement(2912729..2913307) Roseobacter denitrificans OCh 114 4198745 YP_683242.1 CDS rpsF NC_008209.1 2913641 2913994 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2913641..2913994 Roseobacter denitrificans OCh 114 4198746 YP_683243.1 CDS rpsR NC_008209.1 2914021 2914248 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2914021..2914248 Roseobacter denitrificans OCh 114 4198747 YP_683244.1 CDS rplI NC_008209.1 2914259 2914894 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2914259..2914894 Roseobacter denitrificans OCh 114 4198748 YP_683245.1 CDS RD1_3046 NC_008209.1 2915060 2915233 R hypothetical protein complement(2915060..2915233) Roseobacter denitrificans OCh 114 4198749 YP_683246.1 CDS aox NC_008209.1 2915228 2915869 D alternative oxidase 2915228..2915869 Roseobacter denitrificans OCh 114 4198750 YP_683247.1 CDS apqZ NC_008209.1 2915924 2916613 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(2915924..2916613) Roseobacter denitrificans OCh 114 4198751 YP_683248.1 CDS tig NC_008209.1 2916749 2918080 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2916749..2918080) Roseobacter denitrificans OCh 114 4198752 YP_683249.1 CDS RD1_3050 NC_008209.1 2918316 2921336 R ABC transporter permease complement(2918316..2921336) Roseobacter denitrificans OCh 114 4198753 YP_683250.1 CDS RD1_3051 NC_008209.1 2921995 2922567 R hypothetical protein complement(2921995..2922567) Roseobacter denitrificans OCh 114 4198754 YP_683251.1 CDS rrmJ NC_008209.1 2922661 2923383 R ribosomal RNA large subunit methyltransferase complement(2922661..2923383) Roseobacter denitrificans OCh 114 4198755 YP_683252.1 CDS RD1_3053 NC_008209.1 2923383 2924498 R Ppx/GppA phosphatase complement(2923383..2924498) Roseobacter denitrificans OCh 114 4198756 YP_683253.1 CDS RD1_3054 NC_008209.1 2924772 2925068 D hypothetical protein 2924772..2925068 Roseobacter denitrificans OCh 114 4198719 YP_683254.1 CDS metF NC_008209.1 2925059 2926042 D 5,10-methylenetetrahydrofolate reductase 2925059..2926042 Roseobacter denitrificans OCh 114 4198720 YP_683255.1 CDS metH NC_008209.1 2926061 2927143 D catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 2926061..2927143 Roseobacter denitrificans OCh 114 4198721 YP_683256.1 CDS cheY NC_008209.1 2927654 2928019 D chemotaxis protein CheY 2927654..2928019 Roseobacter denitrificans OCh 114 4198722 YP_683257.1 CDS cheA NC_008209.1 2928050 2930272 D chemotaxis protein CheA 2928050..2930272 Roseobacter denitrificans OCh 114 4198723 YP_683258.1 CDS cheW NC_008209.1 2930269 2930727 D chemotaxis protein CheW 2930269..2930727 Roseobacter denitrificans OCh 114 4198724 YP_683259.1 CDS cheR NC_008209.1 2930727 2931611 D chemotaxis protein methyltransferase 2930727..2931611 Roseobacter denitrificans OCh 114 4198725 YP_683260.1 CDS cheY NC_008209.1 2931602 2931988 D chemotaxis response regulator CheY 2931602..2931988 Roseobacter denitrificans OCh 114 4198726 YP_683261.2 CDS RD1_3063 NC_008209.1 2932629 2933438 D integrase catalytic subunit 2932629..2933438 Roseobacter denitrificans OCh 114 4198727 YP_683262.1 CDS RD1_3064 NC_008209.1 2933452 2933622 R integrase catalytic subunit complement(2933452..2933622) Roseobacter denitrificans OCh 114 4198728 YP_683263.1 CDS RD1_3065 NC_008209.1 2934019 2934192 R hypothetical protein complement(2934019..2934192) Roseobacter denitrificans OCh 114 4198729 YP_683264.1 CDS frpC NC_008209.1 2934307 2942307 R iron-regulated protein frpC complement(2934307..2942307) Roseobacter denitrificans OCh 114 4198730 YP_683265.1 CDS RD1_3067 NC_008209.1 2942628 2942756 R hypothetical protein complement(2942628..2942756) Roseobacter denitrificans OCh 114 4198731 YP_683266.1 CDS RD1_3069 NC_008209.1 2943198 2944772 D phage integrase family site specific recombinase 2943198..2944772 Roseobacter denitrificans OCh 114 4198733 YP_683267.1 CDS RD1_3070 NC_008209.1 2944769 2945035 R DNA-binding protein complement(2944769..2945035) Roseobacter denitrificans OCh 114 4198734 YP_683268.1 CDS RD1_3071 NC_008209.1 2945130 2945597 D hypothetical protein 2945130..2945597 Roseobacter denitrificans OCh 114 4198735 YP_683269.1 CDS RD1_3072 NC_008209.1 2945607 2945969 D hypothetical protein 2945607..2945969 Roseobacter denitrificans OCh 114 4198736 YP_683270.1 CDS RD1_3073 NC_008209.1 2946828 2946956 R hypothetical protein complement(2946828..2946956) Roseobacter denitrificans OCh 114 4198699 YP_683271.1 CDS RD1_3074 NC_008209.1 2946937 2947032 R hypothetical protein complement(2946937..2947032) Roseobacter denitrificans OCh 114 4198700 YP_683272.1 CDS RD1_3075 NC_008209.1 2947011 2948381 R carbohydrate kinases complement(2947011..2948381) Roseobacter denitrificans OCh 114 4198701 YP_683273.1 CDS RD1_3076 NC_008209.1 2948378 2948695 R hypothetical protein complement(2948378..2948695) Roseobacter denitrificans OCh 114 4198702 YP_683274.1 CDS RD1_3077 NC_008209.1 2948692 2949693 R sugar ABC transporter permease complement(2948692..2949693) Roseobacter denitrificans OCh 114 4198703 YP_683275.1 CDS rbsC NC_008209.1 2949690 2950652 R ribose ABC transporter permease complement(2949690..2950652) Roseobacter denitrificans OCh 114 4198704 YP_683276.1 CDS rbsA NC_008209.1 2950667 2952202 R ribose transport ATP-binding protein complement(2950667..2952202) Roseobacter denitrificans OCh 114 4198705 YP_683277.1 CDS RD1_3080 NC_008209.1 2952252 2953244 R sugar ABC transporter ATP binding protein complement(2952252..2953244) Roseobacter denitrificans OCh 114 4198706 YP_683278.1 CDS RD1_3082 NC_008209.1 2953269 2954081 R DeoR family transcriptional regulator complement(2953269..2954081) Roseobacter denitrificans OCh 114 4198707 YP_683279.1 CDS RD1_3083 NC_008209.1 2954268 2956370 D short chain dehydrogenase 2954268..2956370 Roseobacter denitrificans OCh 114 4198708 YP_683280.1 CDS RD1_3084 NC_008209.1 2956384 2957658 D hypothetical protein 2956384..2957658 Roseobacter denitrificans OCh 114 4198709 YP_683281.1 CDS fixL NC_008209.1 2957784 2960129 D sensor protein FixL 2957784..2960129 Roseobacter denitrificans OCh 114 4198710 YP_683282.1 CDS fixJ NC_008209.1 2960113 2960754 D transcriptional regulatory protein FixJ 2960113..2960754 Roseobacter denitrificans OCh 114 4198711 YP_683283.1 CDS aroB NC_008209.1 2961152 2962264 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(2961152..2962264) Roseobacter denitrificans OCh 114 4198712 YP_683284.1 CDS aroK NC_008209.1 2962257 2962850 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(2962257..2962850) Roseobacter denitrificans OCh 114 4198713 YP_683285.1 CDS RD1_3089 NC_008209.1 2962927 2963076 D hypothetical protein 2962927..2963076 Roseobacter denitrificans OCh 114 4198714 YP_683286.1 CDS RD1_3090 NC_008209.1 2963066 2964604 D hypothetical protein 2963066..2964604 Roseobacter denitrificans OCh 114 4198715 YP_683287.1 CDS xerD NC_008209.1 2964604 2965575 D tyrosine recombinase XerD 2964604..2965575 Roseobacter denitrificans OCh 114 4198716 YP_683288.1 CDS RD1_3092 NC_008209.1 2965734 2967041 D hypothetical protein 2965734..2967041 Roseobacter denitrificans OCh 114 4198717 YP_683289.1 CDS RD1_3093 NC_008209.1 2967089 2969512 R dimethylglycine dehydrogenase complement(2967089..2969512) Roseobacter denitrificans OCh 114 4198718 YP_683290.1 CDS RD1_3094 NC_008209.1 2969618 2970883 R hypothetical protein complement(2969618..2970883) Roseobacter denitrificans OCh 114 4198680 YP_683291.1 CDS RD1_3095 NC_008209.1 2970956 2972467 R hypothetical protein complement(2970956..2972467) Roseobacter denitrificans OCh 114 4198681 YP_683292.1 CDS RD1_3096 NC_008209.1 2972800 2973789 R ABC transporter substrate-binding protein complement(2972800..2973789) Roseobacter denitrificans OCh 114 4198682 YP_683293.1 CDS RD1_3097 NC_008209.1 2973836 2974675 R ABC transporter permease complement(2973836..2974675) Roseobacter denitrificans OCh 114 4198683 YP_683294.1 CDS RD1_3098 NC_008209.1 2974675 2975583 R ABC transporter permease complement(2974675..2975583) Roseobacter denitrificans OCh 114 4198684 YP_683295.1 CDS RD1_3099 NC_008209.1 2975597 2976379 R ABC transporter ATP-binding protein complement(2975597..2976379) Roseobacter denitrificans OCh 114 4198685 YP_683296.1 CDS hydA NC_008209.1 2976403 2977857 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(2976403..2977857) Roseobacter denitrificans OCh 114 4198686 YP_683297.1 CDS RD1_3101 NC_008209.1 2977883 2979133 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2977883..2979133) Roseobacter denitrificans OCh 114 4198687 YP_683298.1 CDS RD1_3102 NC_008209.1 2979322 2979930 D TetR family transcriptional regulator 2979322..2979930 Roseobacter denitrificans OCh 114 4198688 YP_683299.1 CDS RD1_3103 NC_008209.1 2979988 2981292 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(2979988..2981292) Roseobacter denitrificans OCh 114 4198689 YP_683300.1 CDS gltD NC_008209.1 2981292 2982626 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(2981292..2982626) Roseobacter denitrificans OCh 114 4198690 YP_683301.1 CDS RD1_3106 NC_008209.1 2982670 2982765 R hypothetical protein complement(2982670..2982765) Roseobacter denitrificans OCh 114 4198691 YP_683302.1 CDS RD1_3107 NC_008209.1 2983032 2986286 R regulatory protein complement(2983032..2986286) Roseobacter denitrificans OCh 114 4198692 YP_683303.1 CDS RD1_3108 NC_008209.1 2986532 2987203 D hypothetical protein 2986532..2987203 Roseobacter denitrificans OCh 114 4198693 YP_683304.1 CDS galM NC_008209.1 2987282 2988250 D aldose 1-epimerase 2987282..2988250 Roseobacter denitrificans OCh 114 4198694 YP_683305.1 CDS RD1_3110 NC_008209.1 2988482 2988832 D hypothetical protein 2988482..2988832 Roseobacter denitrificans OCh 114 4198695 YP_683306.1 CDS ndk NC_008209.1 2988860 2989282 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2988860..2989282) Roseobacter denitrificans OCh 114 4198696 YP_683307.1 CDS yheS NC_008209.1 2989423 2991285 D ABC transporter ATP-binding protein 2989423..2991285 Roseobacter denitrificans OCh 114 4198697 YP_683308.1 CDS bchJ NC_008209.1 2991282 2991923 R bacteriochlorophyll 4-vinyl reductase complement(2991282..2991923) Roseobacter denitrificans OCh 114 4198698 YP_683309.1 CDS RD1_3115 NC_008209.1 2992158 2992790 D MarC family integral membrane protein 2992158..2992790 Roseobacter denitrificans OCh 114 4198660 YP_683310.1 CDS RD1_3116 NC_008209.1 2992842 2993423 D hypothetical protein 2992842..2993423 Roseobacter denitrificans OCh 114 4198661 YP_683311.1 CDS RD1_3117 NC_008209.1 2993420 2993887 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(2993420..2993887) Roseobacter denitrificans OCh 114 4198662 YP_683312.1 CDS pepA NC_008209.1 2993893 2995398 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(2993893..2995398) Roseobacter denitrificans OCh 114 4198663 YP_683313.1 CDS RD1_3119 NC_008209.1 2995504 2996631 D hypothetical protein 2995504..2996631 Roseobacter denitrificans OCh 114 4198664 YP_683314.1 CDS RD1_3120 NC_008209.1 2996628 2997725 D YjgP/YjgQ family permease 2996628..2997725 Roseobacter denitrificans OCh 114 4198665 YP_683315.1 CDS ost NC_008209.1 2997722 2999845 D organic solvent tolerance protein 2997722..2999845 Roseobacter denitrificans OCh 114 4198666 YP_683316.1 CDS surA NC_008209.1 2999853 3001073 D peptidyl-prolyl cis-trans isomerase SurA 2999853..3001073 Roseobacter denitrificans OCh 114 4198667 YP_683317.1 CDS pdxA NC_008209.1 3001070 3002050 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3001070..3002050 Roseobacter denitrificans OCh 114 4198668 YP_683318.1 CDS ksgA NC_008209.1 3002078 3002920 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3002078..3002920 Roseobacter denitrificans OCh 114 4198669 YP_683319.1 CDS RD1_3125 NC_008209.1 3002949 3003512 R hypothetical protein complement(3002949..3003512) Roseobacter denitrificans OCh 114 4198670 YP_683320.1 CDS hemK NC_008209.1 3003736 3004551 R HemK family modification methylase complement(3003736..3004551) Roseobacter denitrificans OCh 114 4198671 YP_683321.1 CDS prfA NC_008209.1 3004566 3005621 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3004566..3005621) Roseobacter denitrificans OCh 114 4198672 YP_683322.1 CDS RD1_3128 NC_008209.1 3005684 3005971 D hypothetical protein 3005684..3005971 Roseobacter denitrificans OCh 114 4198673 YP_683323.1 CDS RD1_3129 NC_008209.1 3005915 3006316 R hypothetical protein complement(3005915..3006316) Roseobacter denitrificans OCh 114 4198674 YP_683324.1 CDS RD1_3130 NC_008209.1 3006356 3007306 R agmatinase complement(3006356..3007306) Roseobacter denitrificans OCh 114 4198675 YP_683325.1 CDS RD1_3131 NC_008209.1 3007306 3008274 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3007306..3008274) Roseobacter denitrificans OCh 114 4198676 YP_683326.1 CDS RD1_3132 NC_008209.1 3008278 3009447 R amidohydrolase complement(3008278..3009447) Roseobacter denitrificans OCh 114 4198677 YP_683327.1 CDS mazG NC_008209.1 3009511 3010326 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 3009511..3010326 Roseobacter denitrificans OCh 114 4198678 YP_683328.1 CDS RD1_3134 NC_008209.1 3010505 3011446 D inosine-uridine preferring nucleoside hydrolase 3010505..3011446 Roseobacter denitrificans OCh 114 4198679 YP_683329.1 CDS RD1_3135 NC_008209.1 3011443 3011892 D acetyltransferase 3011443..3011892 Roseobacter denitrificans OCh 114 4198641 YP_683330.1 CDS RD1_3136 NC_008209.1 3011937 3013349 D hypothetical protein 3011937..3013349 Roseobacter denitrificans OCh 114 4198642 YP_683331.1 CDS RD1_3137 NC_008209.1 3013346 3014233 R hypothetical protein complement(3013346..3014233) Roseobacter denitrificans OCh 114 4198643 YP_683332.1 CDS rhlE2 NC_008209.1 3014297 3015598 R ATP-dependent RNA helicase complement(3014297..3015598) Roseobacter denitrificans OCh 114 4198644 YP_683333.1 CDS RD1_3139 NC_008209.1 3015841 3015939 D hypothetical protein 3015841..3015939 Roseobacter denitrificans OCh 114 4198645 YP_683334.1 CDS fur NC_008209.1 3015936 3016349 D ferric uptake regulation protein 3015936..3016349 Roseobacter denitrificans OCh 114 4198646 YP_683335.1 CDS RD1_3141 NC_008209.1 3016425 3017297 D hypothetical protein 3016425..3017297 Roseobacter denitrificans OCh 114 4198647 YP_683336.1 CDS eno NC_008209.1 3017362 3018636 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3017362..3018636 Roseobacter denitrificans OCh 114 4198648 YP_683337.1 CDS RD1_3143 NC_008209.1 3018633 3019148 D acetyltransferase 3018633..3019148 Roseobacter denitrificans OCh 114 4198649 YP_683338.1 CDS RD1_3144 NC_008209.1 3019138 3020214 R fructosyl-amino acid oxidase complement(3019138..3020214) Roseobacter denitrificans OCh 114 4198650 YP_683339.1 CDS anmK NC_008209.1 3020322 3021455 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(3020322..3021455) Roseobacter denitrificans OCh 114 4198651 YP_683340.1 CDS tyrS NC_008209.1 3021520 3022770 D tyrosyl-tRNA synthetase 3021520..3022770 Roseobacter denitrificans OCh 114 4198652 YP_683341.1 CDS hadH NC_008209.1 3022790 3023545 D 3-hydroxyacyl-CoA dehydrogenase 3022790..3023545 Roseobacter denitrificans OCh 114 4198653 YP_683342.1 CDS RD1_3148 NC_008209.1 3023545 3024144 D hypothetical protein 3023545..3024144 Roseobacter denitrificans OCh 114 4198654 YP_683343.1 CDS RD1_3149 NC_008209.1 3024141 3025949 R ABC transporter ATP-binding protein complement(3024141..3025949) Roseobacter denitrificans OCh 114 4198655 YP_683344.1 CDS RD1_3150 NC_008209.1 3026016 3026741 R hypothetical protein complement(3026016..3026741) Roseobacter denitrificans OCh 114 4198656 YP_683345.1 CDS RD1_3151 NC_008209.1 3026764 3027240 R lipoprotein complement(3026764..3027240) Roseobacter denitrificans OCh 114 4198657 YP_683346.1 CDS RD1_3152 NC_008209.1 3027306 3027440 R hypothetical protein complement(3027306..3027440) Roseobacter denitrificans OCh 114 4198658 YP_683347.1 CDS RD1_3153 NC_008209.1 3027328 3027873 D hypothetical protein 3027328..3027873 Roseobacter denitrificans OCh 114 4198659 YP_683348.1 CDS rpmF NC_008209.1 3028104 3028310 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3028104..3028310 Roseobacter denitrificans OCh 114 4198622 YP_683349.1 CDS plsX NC_008209.1 3028360 3029433 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3028360..3029433 Roseobacter denitrificans OCh 114 4198623 YP_683350.1 CDS fabH NC_008209.1 3029430 3030401 D 3-oxoacyl-ACP synthase 3029430..3030401 Roseobacter denitrificans OCh 114 4198624 YP_683351.1 CDS ihfA NC_008209.1 3030463 3030801 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3030463..3030801 Roseobacter denitrificans OCh 114 4198625 YP_683352.1 CDS RD1_3158 NC_008209.1 3030806 3032023 D hypothetical protein 3030806..3032023 Roseobacter denitrificans OCh 114 4198626 YP_683353.1 CDS RD1_3160 NC_008209.1 3032224 3033300 D Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 3032224..3033300 Roseobacter denitrificans OCh 114 4198628 YP_683354.1 CDS RD1_3161 NC_008209.1 3033352 3033957 R hypothetical protein complement(3033352..3033957) Roseobacter denitrificans OCh 114 4198629 YP_683355.1 CDS RD1_3162 NC_008209.1 3034020 3034811 R hypothetical protein complement(3034020..3034811) Roseobacter denitrificans OCh 114 4198630 YP_683356.1 CDS nagZ NC_008209.1 3034827 3035825 R beta-hexosaminidase complement(3034827..3035825) Roseobacter denitrificans OCh 114 4198631 YP_683357.1 CDS RD1_3164 NC_008209.1 3035829 3036797 R hypothetical protein complement(3035829..3036797) Roseobacter denitrificans OCh 114 4198632 YP_683358.1 CDS argS NC_008209.1 3036879 3038621 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(3036879..3038621) Roseobacter denitrificans OCh 114 4198633 YP_683359.1 CDS RD1_3166 NC_008209.1 3038716 3038850 R hypothetical protein complement(3038716..3038850) Roseobacter denitrificans OCh 114 4198634 YP_683360.1 CDS RD1_3167 NC_008209.1 3038914 3040077 R deoxyguanosinetriphosphate triphosphohydrolase complement(3038914..3040077) Roseobacter denitrificans OCh 114 4198635 YP_683361.1 CDS RD1_3168 NC_008209.1 3040159 3040482 D FeS cluster assembly HesB family protein 3040159..3040482 Roseobacter denitrificans OCh 114 4198636 YP_683362.1 CDS RD1_3169 NC_008209.1 3040519 3041568 R hypothetical protein complement(3040519..3041568) Roseobacter denitrificans OCh 114 4198637 YP_683363.1 CDS RD1_3170 NC_008209.1 3041645 3041971 R hypothetical protein complement(3041645..3041971) Roseobacter denitrificans OCh 114 4198638 YP_683364.1 CDS xth NC_008209.1 3042283 3043065 D exodeoxyribonuclease III 3042283..3043065 Roseobacter denitrificans OCh 114 4198639 YP_683365.1 CDS RD1_3172 NC_008209.1 3043066 3043698 R hypothetical protein complement(3043066..3043698) Roseobacter denitrificans OCh 114 4198640 YP_683366.1 CDS RD1_3173 NC_008209.1 3043929 3044513 R HNH endonuclease family protein complement(3043929..3044513) Roseobacter denitrificans OCh 114 4198603 YP_683367.1 CDS RD1_3174 NC_008209.1 3044777 3045121 D hypothetical protein 3044777..3045121 Roseobacter denitrificans OCh 114 4198604 YP_683368.1 CDS RD1_3175 NC_008209.1 3045122 3045787 R phospholipase/carboxylesterase family protein complement(3045122..3045787) Roseobacter denitrificans OCh 114 4198605 YP_683369.1 CDS RD1_3176 NC_008209.1 3045784 3046413 R DNA-3-methyladenine glycosylase II complement(3045784..3046413) Roseobacter denitrificans OCh 114 4198606 YP_683370.1 CDS cobK NC_008209.1 3046410 3047156 R precorrin-6A reductase complement(3046410..3047156) Roseobacter denitrificans OCh 114 4198607 YP_683371.1 CDS RD1_3179 NC_008209.1 3047233 3048444 D MSF transporter protein, permease component 3047233..3048444 Roseobacter denitrificans OCh 114 4198608 YP_683372.1 CDS RD1_3180 NC_008209.1 3048462 3049241 R hypothetical protein complement(3048462..3049241) Roseobacter denitrificans OCh 114 4198609 YP_683373.1 CDS RD1_3181 NC_008209.1 3049238 3049396 R hypothetical protein complement(3049238..3049396) Roseobacter denitrificans OCh 114 4198610 YP_683374.1 CDS RD1_3182 NC_008209.1 3049393 3051012 R alpha-isopropylmalate synthase complement(3049393..3051012) Roseobacter denitrificans OCh 114 4198611 YP_683375.1 CDS cysS NC_008209.1 3051275 3052696 R cysteinyl-tRNA synthetase complement(3051275..3052696) Roseobacter denitrificans OCh 114 4198612 YP_683376.1 CDS RD1_3184 NC_008209.1 3052708 3052866 D hypothetical protein 3052708..3052866 Roseobacter denitrificans OCh 114 4198613 YP_683377.1 CDS aspC NC_008209.1 3052918 3054108 D aspartate aminotransferase 3052918..3054108 Roseobacter denitrificans OCh 114 4198614 YP_683378.1 CDS RD1_3187 NC_008209.1 3054148 3054396 R hypothetical protein complement(3054148..3054396) Roseobacter denitrificans OCh 114 4198615 YP_683379.1 CDS RD1_3188 NC_008209.1 3054433 3055971 D trimethylamine methyltransferase family protein 3054433..3055971 Roseobacter denitrificans OCh 114 4198616 YP_683380.1 CDS RD1_3189 NC_008209.1 3056046 3056177 D hypothetical protein 3056046..3056177 Roseobacter denitrificans OCh 114 4198617 YP_683381.1 CDS RD1_3190 NC_008209.1 3056248 3056481 R hypothetical protein complement(3056248..3056481) Roseobacter denitrificans OCh 114 4198618 YP_683382.1 CDS RD1_3191 NC_008209.1 3056552 3056746 R hypothetical protein complement(3056552..3056746) Roseobacter denitrificans OCh 114 4198619 YP_683383.1 CDS RD1_3192 NC_008209.1 3056743 3057201 R acetyltransferase complement(3056743..3057201) Roseobacter denitrificans OCh 114 4198620 YP_683384.1 CDS nrdJ NC_008209.1 3057624 3061268 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(3057624..3061268) Roseobacter denitrificans OCh 114 4198621 YP_683385.1 CDS RD1_3194 NC_008209.1 3061615 3061797 R hypothetical protein complement(3061615..3061797) Roseobacter denitrificans OCh 114 4198584 YP_683386.1 CDS RD1_3196 NC_008209.1 3062134 3062625 R hypothetical protein complement(3062134..3062625) Roseobacter denitrificans OCh 114 4198586 YP_683387.1 CDS RD1_3197 NC_008209.1 3062592 3063128 R cold shock protein complement(3062592..3063128) Roseobacter denitrificans OCh 114 4198587 YP_683388.1 CDS pdxH NC_008209.1 3063410 3064015 R pyridoxamine 5'-phosphate oxidase complement(3063410..3064015) Roseobacter denitrificans OCh 114 4198588 YP_683389.1 CDS fabI-2 NC_008209.1 3064112 3064987 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 3064112..3064987 Roseobacter denitrificans OCh 114 4198589 YP_683390.1 CDS RD1_3200 NC_008209.1 3064992 3065606 D threonine efflux protein 3064992..3065606 Roseobacter denitrificans OCh 114 4198590 YP_683391.1 CDS gpt NC_008209.1 3065612 3066142 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3065612..3066142 Roseobacter denitrificans OCh 114 4198591 YP_683392.1 CDS aspC NC_008209.1 3066161 3067336 D hypothetical protein 3066161..3067336 Roseobacter denitrificans OCh 114 4198592 YP_683393.1 CDS RD1_3203 NC_008209.1 3067420 3069258 D peptidyl-prolyl cis-trans isomerse D 3067420..3069258 Roseobacter denitrificans OCh 114 4198593 YP_683394.1 CDS trpE NC_008209.1 3069265 3070776 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3069265..3070776 Roseobacter denitrificans OCh 114 4198594 YP_683395.1 CDS RD1_3206 NC_008209.1 3070780 3071817 D hypothetical protein 3070780..3071817 Roseobacter denitrificans OCh 114 4198595 YP_683396.1 CDS RD1_3207 NC_008209.1 3072052 3074097 D diguanylate cyclase 3072052..3074097 Roseobacter denitrificans OCh 114 4198596 YP_683397.1 CDS RD1_3208 NC_008209.1 3074113 3076059 R hypothetical protein complement(3074113..3076059) Roseobacter denitrificans OCh 114 4198597 YP_683398.1 CDS trpG NC_008209.1 3076194 3076775 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 3076194..3076775 Roseobacter denitrificans OCh 114 4198598 YP_683399.1 CDS trpD NC_008209.1 3076784 3077791 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3076784..3077791 Roseobacter denitrificans OCh 114 4198599 YP_683400.1 CDS ung NC_008209.1 3077794 3078450 D uracil-DNA glycosylase 3077794..3078450 Roseobacter denitrificans OCh 114 4198600 YP_683401.1 CDS trpC NC_008209.1 3078447 3079259 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 3078447..3079259 Roseobacter denitrificans OCh 114 4198601 YP_683402.1 CDS moaC NC_008209.1 3079261 3079740 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 3079261..3079740 Roseobacter denitrificans OCh 114 4198602 YP_683403.1 CDS moaA NC_008209.1 3079737 3080909 D molybdenum cofactor biosynthesis protein A 3079737..3080909 Roseobacter denitrificans OCh 114 4198565 YP_683404.1 CDS lexA NC_008209.1 3080979 3081680 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3080979..3081680 Roseobacter denitrificans OCh 114 4198566 YP_683405.1 CDS com NC_008209.1 3081674 3083785 R competence protein complement(3081674..3083785) Roseobacter denitrificans OCh 114 4198567 YP_683406.1 CDS gltX NC_008209.1 3083810 3085210 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3083810..3085210 Roseobacter denitrificans OCh 114 4198568 YP_683407.1 CDS gltA NC_008209.1 3085317 3086612 D citrate synthase 3085317..3086612 Roseobacter denitrificans OCh 114 4198569 YP_683408.1 CDS RD1_3220 NC_008209.1 3086849 3087217 D hypothetical protein 3086849..3087217 Roseobacter denitrificans OCh 114 4198570 YP_683409.1 CDS paaB NC_008209.1 3087223 3087999 R enoyl-CoA hydratase/isomerase family protein complement(3087223..3087999) Roseobacter denitrificans OCh 114 4198571 YP_683410.1 CDS cycL NC_008209.1 3088070 3088525 R cytochrome c-type biogenesis protein complement(3088070..3088525) Roseobacter denitrificans OCh 114 4198572 YP_683411.1 CDS cycK NC_008209.1 3088522 3090495 R cytochrome c-type biogenesis protein complement(3088522..3090495) Roseobacter denitrificans OCh 114 4198573 YP_683412.1 CDS RD1_3224 NC_008209.1 3090554 3091144 R hypothetical protein complement(3090554..3091144) Roseobacter denitrificans OCh 114 4198574 YP_683413.1 CDS RD1_3225 NC_008209.1 3091135 3091689 R hypothetical protein complement(3091135..3091689) Roseobacter denitrificans OCh 114 4198575 YP_683414.1 CDS cycJ NC_008209.1 3091826 3092269 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(3091826..3092269) Roseobacter denitrificans OCh 114 4198576 YP_683415.1 CDS argC NC_008209.1 3092277 3093305 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(3092277..3093305) Roseobacter denitrificans OCh 114 4198577 YP_683416.1 CDS murI NC_008209.1 3093336 3094145 R glutamate racemase complement(3093336..3094145) Roseobacter denitrificans OCh 114 4198578 YP_683417.1 CDS RD1_3229 NC_008209.1 3094170 3095054 R acyltransferase domain-containing protein complement(3094170..3095054) Roseobacter denitrificans OCh 114 4198579 YP_683418.1 CDS RD1_3230 NC_008209.1 3095127 3098525 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(3095127..3098525) Roseobacter denitrificans OCh 114 4198580 YP_683419.1 CDS RD1_3231 NC_008209.1 3098694 3099599 D LysR family transcriptional regulator 3098694..3099599 Roseobacter denitrificans OCh 114 4198581 YP_683420.1 CDS purL NC_008209.1 3099884 3102043 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 3099884..3102043 Roseobacter denitrificans OCh 114 4198582 YP_683421.1 CDS RD1_3233 NC_008209.1 3102127 3103392 R von Willebrand factor A complement(3102127..3103392) Roseobacter denitrificans OCh 114 4198583 YP_683422.1 CDS RD1_3234 NC_008209.1 3103441 3104349 R hypothetical protein complement(3103441..3104349) Roseobacter denitrificans OCh 114 4198545 YP_683423.1 CDS pyrC NC_008209.1 3104588 3105622 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3104588..3105622 Roseobacter denitrificans OCh 114 4198546 YP_683424.1 CDS pyrE NC_008209.1 3105675 3106352 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3105675..3106352 Roseobacter denitrificans OCh 114 4198547 YP_683425.1 CDS dnaB NC_008209.1 3106588 3108081 D unwinds double stranded DNA; replicative DNA helicase 3106588..3108081 Roseobacter denitrificans OCh 114 4198548 YP_683426.1 CDS RD1_3238 NC_008209.1 3108363 3108932 D hypothetical protein 3108363..3108932 Roseobacter denitrificans OCh 114 4198549 YP_683427.1 CDS RD1_3239 NC_008209.1 3109038 3109136 D hypothetical protein 3109038..3109136 Roseobacter denitrificans OCh 114 4198550 YP_683428.1 CDS alr NC_008209.1 3109167 3110201 D alanine racemase 3109167..3110201 Roseobacter denitrificans OCh 114 4198551 YP_683429.1 CDS RD1_3241 NC_008209.1 3110198 3110971 D hypothetical protein 3110198..3110971 Roseobacter denitrificans OCh 114 4198552 YP_683430.1 CDS RD1_3243 NC_008209.1 3110968 3111714 D ABC transporter ATP-binding protein 3110968..3111714 Roseobacter denitrificans OCh 114 4198553 YP_683431.1 CDS RD1_3244 NC_008209.1 3111895 3112548 D hypothetical protein 3111895..3112548 Roseobacter denitrificans OCh 114 4198554 YP_683432.1 CDS radA NC_008209.1 3112701 3114062 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3112701..3114062 Roseobacter denitrificans OCh 114 4198555 YP_683433.1 CDS RD1_3246 NC_008209.1 3114090 3114644 D CvpA family protein 3114090..3114644 Roseobacter denitrificans OCh 114 4198556 YP_683434.1 CDS RD1_3247 NC_008209.1 3114831 3116315 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3114831..3116315 Roseobacter denitrificans OCh 114 4198557 YP_683435.1 CDS RD1_3248 NC_008209.1 3116425 3117060 D oxidoreductase 3116425..3117060 Roseobacter denitrificans OCh 114 4198558 YP_683436.1 CDS surE NC_008209.1 3117149 3117934 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3117149..3117934 Roseobacter denitrificans OCh 114 4198559 YP_683437.1 CDS pcm NC_008209.1 3117943 3118584 D protein-L-isoaspartate O-methyltransferase 3117943..3118584 Roseobacter denitrificans OCh 114 4198560 YP_683438.1 CDS lysM NC_008209.1 3118658 3119860 D LysM domain-containing protein 3118658..3119860 Roseobacter denitrificans OCh 114 4198561 YP_683439.1 CDS RD1_3252 NC_008209.1 3119938 3120783 R hypothetical protein complement(3119938..3120783) Roseobacter denitrificans OCh 114 4198562 YP_683440.1 CDS tatC NC_008209.1 3120780 3121628 R Sec-independent protein translocase TatC complement(3120780..3121628) Roseobacter denitrificans OCh 114 4198563 YP_683441.1 CDS tatB NC_008209.1 3121625 3122080 R Sec-independent protein translocase tatB-like protein complement(3121625..3122080) Roseobacter denitrificans OCh 114 4198564 YP_683442.1 CDS RD1_3255 NC_008209.1 3122084 3122296 R twin arginine-targeting protein translocase complement(3122084..3122296) Roseobacter denitrificans OCh 114 4198526 YP_683443.1 CDS RD1_3256 NC_008209.1 3122515 3122844 D hypothetical protein 3122515..3122844 Roseobacter denitrificans OCh 114 4198527 YP_683444.1 CDS RD1_3257 NC_008209.1 3122831 3123496 D transcriptional regulator 3122831..3123496 Roseobacter denitrificans OCh 114 4198528 YP_683445.1 CDS RD1_3258 NC_008209.1 3123550 3123909 R hypothetical protein complement(3123550..3123909) Roseobacter denitrificans OCh 114 4198529 YP_683446.1 CDS RD1_3259 NC_008209.1 3123902 3124252 R hypothetical protein complement(3123902..3124252) Roseobacter denitrificans OCh 114 4198530 YP_683447.1 CDS RD1_3260 NC_008209.1 3124252 3125358 R iron ABC transporter ATP-binding protein complement(3124252..3125358) Roseobacter denitrificans OCh 114 4198531 YP_683448.1 CDS RD1_3261 NC_008209.1 3125489 3126268 R oxidoreductase complement(3125489..3126268) Roseobacter denitrificans OCh 114 4198532 YP_683449.1 CDS prfC NC_008209.1 3126388 3127995 D peptide chain release factor 3 3126388..3127995 Roseobacter denitrificans OCh 114 4198533 YP_683450.1 CDS rhlE NC_008209.1 3128176 3129693 D ATP-dependent RNA helicase 3128176..3129693 Roseobacter denitrificans OCh 114 4198534 YP_683451.1 CDS RD1_3264 NC_008209.1 3129716 3129835 R hypothetical protein complement(3129716..3129835) Roseobacter denitrificans OCh 114 4198535 YP_683452.1 CDS RD1_3265 NC_008209.1 3129856 3131523 R metallo-beta-lactamase family protein complement(3129856..3131523) Roseobacter denitrificans OCh 114 4198536 YP_683453.1 CDS RD1_3266 NC_008209.1 3131528 3132301 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(3131528..3132301) Roseobacter denitrificans OCh 114 4198537 YP_683454.1 CDS RD1_3267 NC_008209.1 3132320 3133081 R biotin--acetyl-CoA-carboxylase ligase complement(3132320..3133081) Roseobacter denitrificans OCh 114 4198538 YP_683455.1 CDS nuoN NC_008209.1 3133115 3134557 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3133115..3134557) Roseobacter denitrificans OCh 114 4198539 YP_683456.1 CDS nuoM NC_008209.1 3134570 3136111 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3134570..3136111) Roseobacter denitrificans OCh 114 4198540 YP_683457.1 CDS nuoL NC_008209.1 3136111 3138216 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(3136111..3138216) Roseobacter denitrificans OCh 114 4198541 YP_683458.1 CDS nuoK NC_008209.1 3138348 3138653 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3138348..3138653) Roseobacter denitrificans OCh 114 4198542 YP_683459.1 CDS RD1_3272 NC_008209.1 3138700 3139275 R hypothetical protein complement(3138700..3139275) Roseobacter denitrificans OCh 114 4198543 YP_683460.1 CDS nuoJ NC_008209.1 3139291 3139893 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(3139291..3139893) Roseobacter denitrificans OCh 114 4198544 YP_683461.1 CDS RD1_3274 NC_008209.1 3139894 3140310 R carboxymuconolactone decarboxylase complement(3139894..3140310) Roseobacter denitrificans OCh 114 4195228 YP_683462.1 CDS nuoI NC_008209.1 3140307 3140801 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3140307..3140801) Roseobacter denitrificans OCh 114 4195229 YP_683463.1 CDS nuoH NC_008209.1 3140803 3141840 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3140803..3141840) Roseobacter denitrificans OCh 114 4195230 YP_683464.1 CDS RD1_3277 NC_008209.1 3141847 3142188 R lipoprotein complement(3141847..3142188) Roseobacter denitrificans OCh 114 4195231 YP_683465.1 CDS nuoG NC_008209.1 3142185 3144200 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(3142185..3144200) Roseobacter denitrificans OCh 114 4195232 YP_683466.1 CDS RD1_3279 NC_008209.1 3144242 3144736 R hypothetical protein complement(3144242..3144736) Roseobacter denitrificans OCh 114 4195233 YP_683467.1 CDS RD1_3280 NC_008209.1 3144765 3145139 R hypothetical protein complement(3144765..3145139) Roseobacter denitrificans OCh 114 4195234 YP_683468.1 CDS RD1_3281 NC_008209.1 3145100 3145600 R hypothetical protein complement(3145100..3145600) Roseobacter denitrificans OCh 114 4195235 YP_683469.1 CDS nuoF NC_008209.1 3145812 3147107 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(3145812..3147107) Roseobacter denitrificans OCh 114 4195236 YP_683470.1 CDS RD1_3283 NC_008209.1 3147120 3147368 R hypothetical protein complement(3147120..3147368) Roseobacter denitrificans OCh 114 4195237 YP_683471.1 CDS RD1_3284 NC_008209.1 3147396 3148094 R hypothetical protein complement(3147396..3148094) Roseobacter denitrificans OCh 114 4195238 YP_683472.1 CDS nuoE NC_008209.1 3148124 3149203 R catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit E complement(3148124..3149203) Roseobacter denitrificans OCh 114 4195239 YP_683473.1 CDS RD1_3286 NC_008209.1 3149216 3149308 R hypothetical protein complement(3149216..3149308) Roseobacter denitrificans OCh 114 4195240 YP_683474.1 CDS nuoD NC_008209.1 3149305 3150528 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3149305..3150528) Roseobacter denitrificans OCh 114 4195241 YP_683475.1 CDS RD1_3288 NC_008209.1 3150530 3150706 R hypothetical protein complement(3150530..3150706) Roseobacter denitrificans OCh 114 4195242 YP_683476.1 CDS RD1_3289 NC_008209.1 3150766 3151743 R hypothetical protein complement(3150766..3151743) Roseobacter denitrificans OCh 114 4195243 YP_683477.1 CDS nuoC NC_008209.1 3151740 3152339 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3151740..3152339) Roseobacter denitrificans OCh 114 4195244 YP_683478.1 CDS nuoB NC_008209.1 3152379 3152912 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3152379..3152912) Roseobacter denitrificans OCh 114 4195245 YP_683479.1 CDS nuoA NC_008209.1 3153231 3153596 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(3153231..3153596) Roseobacter denitrificans OCh 114 4195246 YP_683480.1 CDS RD1_3293 NC_008209.1 3153832 3154356 D hypothetical protein 3153832..3154356 Roseobacter denitrificans OCh 114 4195247 YP_683481.1 CDS RD1_3294 NC_008209.1 3154429 3155211 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3154429..3155211) Roseobacter denitrificans OCh 114 4195363 YP_683482.1 CDS mvaB NC_008209.1 3155221 3156093 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(3155221..3156093) Roseobacter denitrificans OCh 114 4195364 YP_683483.1 CDS gst NC_008209.1 3156122 3156787 R glutathione S-transferase complement(3156122..3156787) Roseobacter denitrificans OCh 114 4195365 YP_683484.1 CDS mccA NC_008209.1 3156784 3158721 R methylcrotonyl-CoA carboxylase subunit alpha complement(3156784..3158721) Roseobacter denitrificans OCh 114 4195366 YP_683485.1 CDS mccB NC_008209.1 3158799 3160403 R methylcrotonyl-CoA carboxylase subunit beta complement(3158799..3160403) Roseobacter denitrificans OCh 114 4195367 YP_683486.1 CDS RD1_3299 NC_008209.1 3160450 3160770 R hypothetical protein complement(3160450..3160770) Roseobacter denitrificans OCh 114 4195368 YP_683487.1 CDS ompW NC_008209.1 3160893 3161498 D outer membrane protein W 3160893..3161498 Roseobacter denitrificans OCh 114 4195369 YP_683488.1 CDS ivd NC_008209.1 3161545 3162708 R isovaleryl-CoA dehydrogenase complement(3161545..3162708) Roseobacter denitrificans OCh 114 4195370 YP_683489.1 CDS RD1_3302 NC_008209.1 3162897 3164093 R aminotransferase complement(3162897..3164093) Roseobacter denitrificans OCh 114 4195371 YP_683490.1 CDS gph NC_008209.1 3164141 3164806 R phosphoglycolate phosphatase complement(3164141..3164806) Roseobacter denitrificans OCh 114 4195372 YP_683491.1 CDS glmU NC_008209.1 3164940 3166292 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3164940..3166292 Roseobacter denitrificans OCh 114 4195373 YP_683492.1 CDS glmS NC_008209.1 3166295 3168115 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3166295..3168115 Roseobacter denitrificans OCh 114 4195374 YP_683493.1 CDS RD1_3306 NC_008209.1 3168343 3168897 D pyridoxamine 5'-phosphate oxidase family protein 3168343..3168897 Roseobacter denitrificans OCh 114 4195375 YP_683494.1 CDS moaA NC_008209.1 3168991 3169998 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 3168991..3169998 Roseobacter denitrificans OCh 114 4195376 YP_683495.1 CDS kdtA NC_008209.1 3170007 3171302 D 3-deoxy-D-manno-octulosonic acid transferase 3170007..3171302 Roseobacter denitrificans OCh 114 4195377 YP_683496.1 CDS lpcC NC_008209.1 3171302 3172372 D lipopolysaccharide core biosynthesis mannosyltransferase 3171302..3172372 Roseobacter denitrificans OCh 114 4195378 YP_683497.1 CDS RD1_3310 NC_008209.1 3172469 3173632 R amidohydrolase complement(3172469..3173632) Roseobacter denitrificans OCh 114 4195379 YP_683498.1 CDS argE NC_008209.1 3173988 3175151 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3173988..3175151) Roseobacter denitrificans OCh 114 4195380 YP_683499.1 CDS RD1_3314 NC_008209.1 3177368 3179098 D peptide ABC transporter substrate-binding protein 3177368..3179098 Roseobacter denitrificans OCh 114 4195461 YP_683500.1 CDS RD1_3315 NC_008209.1 3179220 3180227 D ABC transporter permease 3179220..3180227 Roseobacter denitrificans OCh 114 4195462 YP_683501.1 CDS RD1_3316 NC_008209.1 3180184 3181197 D ABC transporter permease 3180184..3181197 Roseobacter denitrificans OCh 114 4195463 YP_683502.1 CDS RD1_3317 NC_008209.1 3181284 3182576 R hypothetical protein complement(3181284..3182576) Roseobacter denitrificans OCh 114 4195464 YP_683503.1 CDS pntB NC_008209.1 3183052 3184548 R NAD(P) transhydrogenase subunit beta complement(3183052..3184548) Roseobacter denitrificans OCh 114 4195465 YP_683504.1 CDS pntA NC_008209.1 3184562 3186136 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(3184562..3186136) Roseobacter denitrificans OCh 114 4195466 YP_683505.1 CDS RD1_3320 NC_008209.1 3186262 3186711 R hypothetical protein complement(3186262..3186711) Roseobacter denitrificans OCh 114 4195467 YP_683506.1 CDS RD1_3321 NC_008209.1 3186971 3187729 D oxidoreductase 3186971..3187729 Roseobacter denitrificans OCh 114 4195468 YP_683507.1 CDS RD1_3322 NC_008209.1 3187788 3187901 R hypothetical protein complement(3187788..3187901) Roseobacter denitrificans OCh 114 4195469 YP_683508.1 CDS RD1_3323 NC_008209.1 3187859 3188635 R glutamine amidotransferase complement(3187859..3188635) Roseobacter denitrificans OCh 114 4195470 YP_683509.1 CDS RD1_3324 NC_008209.1 3188696 3188794 D hypothetical protein 3188696..3188794 Roseobacter denitrificans OCh 114 4195471 YP_683510.1 CDS glcB NC_008209.1 3188847 3190994 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(3188847..3190994) Roseobacter denitrificans OCh 114 4195472 YP_683511.1 CDS RD1_3326 NC_008209.1 3191238 3191405 R hypothetical protein complement(3191238..3191405) Roseobacter denitrificans OCh 114 4195473 YP_683512.1 CDS pepN NC_008209.1 3191509 3194058 D aminopeptidase 3191509..3194058 Roseobacter denitrificans OCh 114 4195474 YP_683513.1 CDS RD1_3328 NC_008209.1 3194062 3194802 D short chain dehydrogenase/reductase family oxidoreductase 3194062..3194802 Roseobacter denitrificans OCh 114 4195475 YP_683514.1 CDS RD1_3329 NC_008209.1 3194870 3195229 D hypothetical protein 3194870..3195229 Roseobacter denitrificans OCh 114 4195476 YP_683515.1 CDS RD1_3330 NC_008209.1 3195242 3195868 R transglycosylase complement(3195242..3195868) Roseobacter denitrificans OCh 114 4195477 YP_683516.1 CDS RD1_3331 NC_008209.1 3196086 3197357 D hypothetical protein 3196086..3197357 Roseobacter denitrificans OCh 114 4195478 YP_683517.1 CDS RD1_3332 NC_008209.1 3197371 3197853 D hypothetical protein 3197371..3197853 Roseobacter denitrificans OCh 114 4195479 YP_683518.1 CDS gatB NC_008209.1 3197980 3199491 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3197980..3199491 Roseobacter denitrificans OCh 114 4195480 YP_683519.1 CDS RD1_3334 NC_008209.1 3199757 3200560 D hypothetical protein 3199757..3200560 Roseobacter denitrificans OCh 114 4195038 YP_683520.1 CDS RD1_3335 NC_008209.1 3200990 3201568 D hypothetical protein 3200990..3201568 Roseobacter denitrificans OCh 114 4195039 YP_683521.1 CDS RD1_3336 NC_008209.1 3201688 3202152 D hypothetical protein 3201688..3202152 Roseobacter denitrificans OCh 114 4195040 YP_683522.1 CDS bolA NC_008209.1 3202162 3202419 R BolA protein complement(3202162..3202419) Roseobacter denitrificans OCh 114 4195041 YP_683523.1 CDS dnaJ NC_008209.1 3202496 3203122 D molecular chaperone DnaJ 3202496..3203122 Roseobacter denitrificans OCh 114 4195042 YP_683524.1 CDS cobS NC_008209.1 3203245 3204231 D aerobic cobaltochelatase CobS subunit 3203245..3204231 Roseobacter denitrificans OCh 114 4195043 YP_683525.1 CDS cobT NC_008209.1 3204283 3206160 D aerobic cobaltochelatase CobT subunit 3204283..3206160 Roseobacter denitrificans OCh 114 4195044 YP_683526.1 CDS RD1_3341 NC_008209.1 3206207 3207997 D M24 family metallopeptidase 3206207..3207997 Roseobacter denitrificans OCh 114 4195045 YP_683527.1 CDS RD1_3342 NC_008209.1 3208073 3208417 D hypothetical protein 3208073..3208417 Roseobacter denitrificans OCh 114 4195046 YP_683528.1 CDS RD1_3343 NC_008209.1 3208426 3210111 R voltage-gated chloride channel protein complement(3208426..3210111) Roseobacter denitrificans OCh 114 4195047 YP_683529.1 CDS recN NC_008209.1 3210179 3211906 R DNA repair protein RecN complement(3210179..3211906) Roseobacter denitrificans OCh 114 4195048 YP_683530.1 CDS comL NC_008209.1 3211863 3212729 R competence lipoprotein ComL complement(3211863..3212729) Roseobacter denitrificans OCh 114 4195049 YP_683531.1 CDS lpxC NC_008209.1 3212907 3213830 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3212907..3213830) Roseobacter denitrificans OCh 114 4195050 YP_683532.2 CDS ftsZ NC_008209.1 3214034 3215566 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(3214034..3215566) Roseobacter denitrificans OCh 114 4195051 YP_683533.1 CDS ftsA NC_008209.1 3215985 3217319 R cell division protein FtsA complement(3215985..3217319) Roseobacter denitrificans OCh 114 4195052 YP_683534.1 CDS ftsQ NC_008209.1 3217323 3218132 R cell division protein FtsQ complement(3217323..3218132) Roseobacter denitrificans OCh 114 4195053 YP_683535.1 CDS ddl NC_008209.1 3218192 3219190 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(3218192..3219190) Roseobacter denitrificans OCh 114 4195054 YP_683536.1 CDS murB NC_008209.1 3219220 3220149 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3219220..3220149) Roseobacter denitrificans OCh 114 4195055 YP_683537.1 CDS RD1_3354 NC_008209.1 3220159 3220407 R hypothetical protein complement(3220159..3220407) Roseobacter denitrificans OCh 114 4195056 YP_683538.1 CDS murC NC_008209.1 3220427 3221833 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3220427..3221833) Roseobacter denitrificans OCh 114 4195114 YP_683539.1 CDS murG NC_008209.1 3221830 3222915 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3221830..3222915) Roseobacter denitrificans OCh 114 4195115 YP_683540.1 CDS ftsW NC_008209.1 3222927 3224096 R cell division protein FtsW complement(3222927..3224096) Roseobacter denitrificans OCh 114 4195116 YP_683541.1 CDS RD1_3359 NC_008209.1 3224229 3225401 D hypothetical protein 3224229..3225401 Roseobacter denitrificans OCh 114 4195117 YP_683542.1 CDS RD1_3360 NC_008209.1 3225353 3225451 R hypothetical protein complement(3225353..3225451) Roseobacter denitrificans OCh 114 4195118 YP_683543.1 CDS murD NC_008209.1 3225515 3226909 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3225515..3226909) Roseobacter denitrificans OCh 114 4195119 YP_683544.1 CDS mraY NC_008209.1 3226962 3228044 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3226962..3228044) Roseobacter denitrificans OCh 114 4195120 YP_683545.1 CDS murF NC_008209.1 3228054 3229484 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(3228054..3229484) Roseobacter denitrificans OCh 114 4195121 YP_683546.1 CDS murE NC_008209.1 3229481 3230962 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3229481..3230962) Roseobacter denitrificans OCh 114 4195122 YP_683547.1 CDS RD1_3366 NC_008209.1 3230981 3232612 R penicillin-binding protein complement(3230981..3232612) Roseobacter denitrificans OCh 114 4195123 YP_683548.1 CDS RD1_3367 NC_008209.1 3232759 3233118 R hypothetical protein complement(3232759..3233118) Roseobacter denitrificans OCh 114 4195124 YP_683549.1 CDS mraW NC_008209.1 3233118 3234110 R S-adenosyl-methyltransferase MraW complement(3233118..3234110) Roseobacter denitrificans OCh 114 4195125 YP_683550.1 CDS RD1_3370 NC_008209.1 3234114 3234647 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(3234114..3234647) Roseobacter denitrificans OCh 114 4195126 YP_683551.1 CDS RD1_3371 NC_008209.1 3235299 3236372 R Mrp/NBP35 family protein complement(3235299..3236372) Roseobacter denitrificans OCh 114 4195127 YP_683552.1 CDS RD1_3372 NC_008209.1 3236591 3236827 D hypothetical protein 3236591..3236827 Roseobacter denitrificans OCh 114 4195128 YP_683553.1 CDS RD1_3373 NC_008209.1 3237115 3237792 R hypothetical protein complement(3237115..3237792) Roseobacter denitrificans OCh 114 4195129 YP_683554.1 CDS RD1_3374 NC_008209.1 3237906 3240338 R DNA helicase II complement(3237906..3240338) Roseobacter denitrificans OCh 114 4195130 YP_683555.1 CDS lldD NC_008209.1 3240444 3241601 D L-lactate dehydrogenase 3240444..3241601 Roseobacter denitrificans OCh 114 4195131 YP_683556.1 CDS pyc NC_008209.1 3241747 3245187 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3241747..3245187 Roseobacter denitrificans OCh 114 4195132 YP_683557.1 CDS RD1_3377 NC_008209.1 3245354 3246187 D hypothetical protein 3245354..3246187 Roseobacter denitrificans OCh 114 4195133 YP_683558.1 CDS RD1_3380 NC_008209.1 3247052 3247909 D integrase catalytic subunit 3247052..3247909 Roseobacter denitrificans OCh 114 4198798 YP_683559.1 CDS RD1_3381 NC_008209.1 3247982 3248407 R transposase complement(3247982..3248407) Roseobacter denitrificans OCh 114 4198799 YP_683560.1 CDS RD1_3382 NC_008209.1 3248702 3250681 R hypothetical protein complement(3248702..3250681) Roseobacter denitrificans OCh 114 4198800 YP_683561.1 CDS RD1_3383 NC_008209.1 3250681 3251865 R MotA/TolQ/ExbB proton channel family protein complement(3250681..3251865) Roseobacter denitrificans OCh 114 4198801 YP_683562.1 CDS chaC NC_008209.1 3251941 3252471 R cation transport protein complement(3251941..3252471) Roseobacter denitrificans OCh 114 4198802 YP_683563.1 CDS RD1_3385 NC_008209.1 3252486 3253541 D hypothetical protein 3252486..3253541 Roseobacter denitrificans OCh 114 4198803 YP_683564.1 CDS RD1_3386 NC_008209.1 3253538 3254317 R hypothetical protein complement(3253538..3254317) Roseobacter denitrificans OCh 114 4198804 YP_683565.1 CDS tyrC NC_008209.1 3254314 3255234 R dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase complement(3254314..3255234) Roseobacter denitrificans OCh 114 4198805 YP_683566.1 CDS hisC NC_008209.1 3255231 3256310 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3255231..3256310) Roseobacter denitrificans OCh 114 4198806 YP_683567.1 CDS RD1_3389 NC_008209.1 3256451 3256564 D hypothetical protein 3256451..3256564 Roseobacter denitrificans OCh 114 4198807 YP_683568.1 CDS RD1_3390 NC_008209.1 3256597 3258564 D acyltransferase 3256597..3258564 Roseobacter denitrificans OCh 114 4198808 YP_683569.1 CDS rpsD NC_008209.1 3258629 3259249 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3258629..3259249) Roseobacter denitrificans OCh 114 4198809 YP_683570.1 CDS tag NC_008209.1 3259382 3259954 R DNA-3-methyladenine glycosylase I complement(3259382..3259954) Roseobacter denitrificans OCh 114 4198810 YP_683571.1 CDS RD1_3393 NC_008209.1 3260054 3260926 D EAL domain-containing protein 3260054..3260926 Roseobacter denitrificans OCh 114 4198811 YP_683572.1 CDS phbA NC_008209.1 3261042 3262262 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3261042..3262262 Roseobacter denitrificans OCh 114 4198812 YP_683573.1 CDS phbB NC_008209.1 3262374 3263096 D acetoacetyl-CoA reductase 3262374..3263096 Roseobacter denitrificans OCh 114 4198813 YP_683574.1 CDS RD1_3396 NC_008209.1 3263175 3263294 R hypothetical protein complement(3263175..3263294) Roseobacter denitrificans OCh 114 4196100 YP_683575.1 CDS RD1_3397 NC_008209.1 3263415 3264347 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3263415..3264347 Roseobacter denitrificans OCh 114 4196101 YP_683576.1 CDS RD1_3398 NC_008209.1 3264403 3264567 R hypothetical protein complement(3264403..3264567) Roseobacter denitrificans OCh 114 4196102 YP_683577.1 CDS RD1_3399 NC_008209.1 3264679 3265419 R hypothetical protein complement(3264679..3265419) Roseobacter denitrificans OCh 114 4196103 YP_683578.1 CDS RD1_3400 NC_008209.1 3265416 3265631 R hypothetical protein complement(3265416..3265631) Roseobacter denitrificans OCh 114 4196104 YP_683579.1 CDS ispB NC_008209.1 3265688 3266689 D octaprenyl-diphosphate synthase 3265688..3266689 Roseobacter denitrificans OCh 114 4196105 YP_683580.1 CDS ispE NC_008209.1 3266682 3267581 R 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(3266682..3267581) Roseobacter denitrificans OCh 114 4196106 YP_683581.1 CDS RD1_3403 NC_008209.1 3267588 3269297 R hypothetical protein complement(3267588..3269297) Roseobacter denitrificans OCh 114 4196107 YP_683582.1 CDS RD1_3404 NC_008209.1 3269443 3271092 R electron transfer flavoprotein-ubiquinone oxidoreductase complement(3269443..3271092) Roseobacter denitrificans OCh 114 4196108 YP_683583.1 CDS greA NC_008209.1 3271168 3272106 D transcription elongation factor GreA 3271168..3272106 Roseobacter denitrificans OCh 114 4196109 YP_683584.1 CDS RD1_3406 NC_008209.1 3272121 3273167 D hypothetical protein 3272121..3273167 Roseobacter denitrificans OCh 114 4196110 YP_683585.1 CDS moeA NC_008209.1 3273276 3275345 R molybdopterin biosynthesis protein complement(3273276..3275345) Roseobacter denitrificans OCh 114 4196111 YP_683586.1 CDS mobB NC_008209.1 3275342 3275836 R molybdopterin-guanine dinucleotide biosynthesis protein B complement(3275342..3275836) Roseobacter denitrificans OCh 114 4196112 YP_683587.1 CDS mobA NC_008209.1 3275833 3276441 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(3275833..3276441) Roseobacter denitrificans OCh 114 4196113 YP_683588.1 CDS fdhD NC_008209.1 3276438 3277325 R formate dehydrogenase accessory protein FdhD complement(3276438..3277325) Roseobacter denitrificans OCh 114 4196114 YP_683589.1 CDS RD1_3411 NC_008209.1 3277376 3278107 D AzlC family protein 3277376..3278107 Roseobacter denitrificans OCh 114 4196115 YP_683590.1 CDS RD1_3412 NC_008209.1 3278104 3278430 D hypothetical protein 3278104..3278430 Roseobacter denitrificans OCh 114 4196116 YP_683591.1 CDS RD1_3413 NC_008209.1 3278437 3278940 R lipoprotein complement(3278437..3278940) Roseobacter denitrificans OCh 114 4196117 YP_683592.1 CDS RD1_3414 NC_008209.1 3279051 3279185 R hypothetical protein complement(3279051..3279185) Roseobacter denitrificans OCh 114 4196118 YP_683593.1 CDS RD1_3415 NC_008209.1 3279342 3279803 R hypothetical protein complement(3279342..3279803) Roseobacter denitrificans OCh 114 4196119 YP_683594.1 CDS RD1_3416 NC_008209.1 3279807 3280853 R metallo-beta-lactamase family protein complement(3279807..3280853) Roseobacter denitrificans OCh 114 4194979 YP_683595.1 CDS RD1_3417 NC_008209.1 3280853 3282547 R acyl-CoA dehydrogenase complement(3280853..3282547) Roseobacter denitrificans OCh 114 4194980 YP_683596.1 CDS RD1_3418 NC_008209.1 3282668 3283612 D Sua5/YciO/YrdC family protein 3282668..3283612 Roseobacter denitrificans OCh 114 4194981 YP_683597.1 CDS RD1_3419 NC_008209.1 3283622 3284176 R hypothetical protein complement(3283622..3284176) Roseobacter denitrificans OCh 114 4194982 YP_683598.1 CDS RD1_3420 NC_008209.1 3284326 3285132 D hypothetical protein 3284326..3285132 Roseobacter denitrificans OCh 114 4194983 YP_683599.1 CDS RD1_3421 NC_008209.1 3285129 3288518 R acriflavine resistance protein complement(3285129..3288518) Roseobacter denitrificans OCh 114 4194984 YP_683600.1 CDS RD1_3422 NC_008209.1 3288522 3289979 R RND family efflux transporter MFP subunit complement(3288522..3289979) Roseobacter denitrificans OCh 114 4194985 YP_683601.1 CDS moaB NC_008209.1 3290074 3290616 R molybdenum cofactor biosynthesis protein B complement(3290074..3290616) Roseobacter denitrificans OCh 114 4194986 YP_683602.1 CDS RD1_3424 NC_008209.1 3290618 3291229 R LysE family protein complement(3290618..3291229) Roseobacter denitrificans OCh 114 4194987 YP_683603.1 CDS udgA NC_008209.1 3291222 3292001 R uracil-DNA glycosylase complement(3291222..3292001) Roseobacter denitrificans OCh 114 4194988 YP_683604.1 CDS pyrB NC_008209.1 3292065 3293063 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3292065..3293063 Roseobacter denitrificans OCh 114 4194989 YP_683605.1 CDS RD1_3428 NC_008209.1 3293060 3293626 D hypothetical protein 3293060..3293626 Roseobacter denitrificans OCh 114 4194990 YP_683606.1 CDS pyr NC_008209.1 3293626 3294906 D dihydroorotase, multifunctional complex type 3293626..3294906 Roseobacter denitrificans OCh 114 4194991 YP_683607.1 CDS RD1_3430 NC_008209.1 3294912 3295514 D hypothetical protein 3294912..3295514 Roseobacter denitrificans OCh 114 4194992 YP_683608.1 CDS ectC NC_008209.1 3295789 3296175 R N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase complement(3295789..3296175) Roseobacter denitrificans OCh 114 4194993 YP_683609.1 CDS RD1_3432 NC_008209.1 3296252 3297193 D oxidoreductase 3296252..3297193 Roseobacter denitrificans OCh 114 4194994 YP_683610.1 CDS RD1_3433 NC_008209.1 3297249 3297896 D hypothetical protein 3297249..3297896 Roseobacter denitrificans OCh 114 4194995 YP_683611.1 CDS RD1_3434 NC_008209.1 3297893 3300394 R dimethylglycine dehydrogenase complement(3297893..3300394) Roseobacter denitrificans OCh 114 4194996 YP_683612.1 CDS RD1_3435 NC_008209.1 3300510 3301904 R oxidoreductase complement(3300510..3301904) Roseobacter denitrificans OCh 114 4194997 YP_683613.1 CDS ggt NC_008209.1 3301935 3303713 R gamma-glutamyltranspeptidase complement(3301935..3303713) Roseobacter denitrificans OCh 114 4198852 YP_683614.1 CDS gyaR NC_008209.1 3303743 3304729 R glyoxylate reductase complement(3303743..3304729) Roseobacter denitrificans OCh 114 4198853 YP_683615.1 CDS RD1_3438 NC_008209.1 3304825 3305361 D hypothetical protein 3304825..3305361 Roseobacter denitrificans OCh 114 4198854 YP_683616.1 CDS RD1_3439 NC_008209.1 3305534 3306526 D oxidoreductase 3305534..3306526 Roseobacter denitrificans OCh 114 4198855 YP_683617.1 CDS RD1_3441 NC_008209.1 3306866 3307465 R hypothetical protein complement(3306866..3307465) Roseobacter denitrificans OCh 114 4198857 YP_683618.1 CDS RD1_3442 NC_008209.1 3307637 3308197 R hypothetical protein complement(3307637..3308197) Roseobacter denitrificans OCh 114 4198858 YP_683619.1 CDS RD1_3443 NC_008209.1 3308809 3309126 R hypothetical protein complement(3308809..3309126) Roseobacter denitrificans OCh 114 4198859 YP_683620.1 CDS tnpA NC_008209.1 3309369 3310757 D transposase 3309369..3310757 Roseobacter denitrificans OCh 114 4198860 YP_683621.1 CDS RD1_3445 NC_008209.1 3311518 3311712 D hypothetical protein 3311518..3311712 Roseobacter denitrificans OCh 114 4198861 YP_683622.1 CDS RD1_3446 NC_008209.1 3311712 3312782 D DNA-binding protein 3311712..3312782 Roseobacter denitrificans OCh 114 4198862 YP_683623.1 CDS RD1_3447 NC_008209.1 3313087 3314736 R UvrD/REP helicase complement(3313087..3314736) Roseobacter denitrificans OCh 114 4198863 YP_683624.1 CDS RD1_3448 NC_008209.1 3314733 3315824 R hypothetical protein complement(3314733..3315824) Roseobacter denitrificans OCh 114 4198864 YP_683625.2 CDS RD1_3449 NC_008209.1 3316002 3316814 R integrase catalytic subunit complement(3316002..3316814) Roseobacter denitrificans OCh 114 4198865 YP_683626.1 CDS RD1_3450 NC_008209.1 3316850 3317116 R hypothetical protein complement(3316850..3317116) Roseobacter denitrificans OCh 114 4198866 YP_683627.1 CDS RD1_3451 NC_008209.1 3318714 3319478 R hypothetical protein complement(3318714..3319478) Roseobacter denitrificans OCh 114 4198867 YP_683628.1 CDS RD1_3452 NC_008209.1 3319831 3320646 D transposase 3319831..3320646 Roseobacter denitrificans OCh 114 4198868 YP_683629.1 CDS RD1_3456 NC_008209.1 3327714 3328010 D hypothetical protein 3327714..3328010 Roseobacter denitrificans OCh 114 4198870 YP_683630.1 CDS RD1_3457 NC_008209.1 3328308 3328784 D transposase 3328308..3328784 Roseobacter denitrificans OCh 114 4195637 YP_683631.1 CDS RD1_3458 NC_008209.1 3328943 3329038 D hypothetical protein 3328943..3329038 Roseobacter denitrificans OCh 114 4195638 YP_683632.1 CDS RD1_3460 NC_008209.1 3329975 3331003 R calcium binding hemolysin protein complement(3329975..3331003) Roseobacter denitrificans OCh 114 4195639 YP_683633.1 CDS RD1_3461 NC_008209.1 3331101 3332438 R two-component hybrid sensor and regulator complement(3331101..3332438) Roseobacter denitrificans OCh 114 4195640 YP_683634.1 CDS RD1_3462 NC_008209.1 3332435 3333112 R two-component response regulator complement(3332435..3333112) Roseobacter denitrificans OCh 114 4195641 YP_683635.1 CDS RD1_3464 NC_008209.1 3334460 3335293 D lipoprotein 3334460..3335293 Roseobacter denitrificans OCh 114 4195643 YP_683636.1 CDS dacC NC_008209.1 3335314 3336483 D D-alanyl-D-alanine carboxypeptidase 3335314..3336483 Roseobacter denitrificans OCh 114 4195644 YP_683637.1 CDS tmk NC_008209.1 3336480 3337118 D thymidylate kinase 3336480..3337118 Roseobacter denitrificans OCh 114 4195645 YP_683638.1 CDS RD1_3467 NC_008209.1 3337115 3338221 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3337115..3338221 Roseobacter denitrificans OCh 114 4195646 YP_683639.1 CDS RD1_3468 NC_008209.1 3338255 3339061 D hypothetical protein 3338255..3339061 Roseobacter denitrificans OCh 114 4195647 YP_683640.1 CDS RD1_3469 NC_008209.1 3339061 3339861 D hypothetical protein 3339061..3339861 Roseobacter denitrificans OCh 114 4195648 YP_683641.1 CDS RD1_3470 NC_008209.1 3339922 3340857 D auxin efflux carrier family protein 3339922..3340857 Roseobacter denitrificans OCh 114 4195649 YP_683642.1 CDS RD1_3471 NC_008209.1 3340810 3341607 R Asp/Glu/Hydantoin racemase family protein complement(3340810..3341607) Roseobacter denitrificans OCh 114 4195650 YP_683643.1 CDS pepQ NC_008209.1 3341604 3342470 R proline dipeptidase complement(3341604..3342470) Roseobacter denitrificans OCh 114 4195651 YP_683644.1 CDS RD1_3473 NC_008209.1 3342758 3343807 R hypothetical protein complement(3342758..3343807) Roseobacter denitrificans OCh 114 4195652 YP_683645.1 CDS RD1_3474 NC_008209.1 3343925 3345100 D peptidase, M24 family protein 3343925..3345100 Roseobacter denitrificans OCh 114 4195653 YP_683646.1 CDS RD1_3475 NC_008209.1 3345105 3346100 D hypothetical protein 3345105..3346100 Roseobacter denitrificans OCh 114 4195654 YP_683647.1 CDS gph NC_008209.1 3346104 3346754 R phosphoglycolate phosphatase complement(3346104..3346754) Roseobacter denitrificans OCh 114 4195343 YP_683648.1 CDS RD1_3477 NC_008209.1 3346866 3347225 R hypothetical protein complement(3346866..3347225) Roseobacter denitrificans OCh 114 4195344 YP_683649.1 CDS RD1_3478 NC_008209.1 3347243 3348169 R hypothetical protein complement(3347243..3348169) Roseobacter denitrificans OCh 114 4195345 YP_683650.1 CDS RD1_3479 NC_008209.1 3348506 3349552 R hemin ABC transport protein, permease component complement(3348506..3349552) Roseobacter denitrificans OCh 114 4195346 YP_683651.1 CDS RD1_3480 NC_008209.1 3349558 3350499 R iron ABC transporter substrate-binding protein complement(3349558..3350499) Roseobacter denitrificans OCh 114 4195347 YP_683652.1 CDS RD1_3481 NC_008209.1 3350512 3351294 R iron ABC transporter ATP-binding protein complement(3350512..3351294) Roseobacter denitrificans OCh 114 4195348 YP_683653.1 CDS RD1_3482 NC_008209.1 3351291 3351734 R hypothetical protein complement(3351291..3351734) Roseobacter denitrificans OCh 114 4195349 YP_683654.1 CDS RD1_3483 NC_008209.1 3352157 3352585 D hypothetical protein 3352157..3352585 Roseobacter denitrificans OCh 114 4195350 YP_683655.1 CDS RD1_3484 NC_008209.1 3352578 3353813 D multidrug resistance efflux pump 3352578..3353813 Roseobacter denitrificans OCh 114 4195351 YP_683656.1 CDS RD1_3485 NC_008209.1 3354002 3355054 R permease complement(3354002..3355054) Roseobacter denitrificans OCh 114 4195352 YP_683657.1 CDS arsR NC_008209.1 3355104 3355418 R ArsR family transcriptional regulator complement(3355104..3355418) Roseobacter denitrificans OCh 114 4195353 YP_683658.1 CDS RD1_3488 NC_008209.1 3355554 3355928 R hypothetical protein complement(3355554..3355928) Roseobacter denitrificans OCh 114 4195354 YP_683659.1 CDS RD1_3489 NC_008209.1 3355998 3356759 D hydrolase 3355998..3356759 Roseobacter denitrificans OCh 114 4195355 YP_683660.1 CDS carB NC_008209.1 3356857 3360216 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3356857..3360216 Roseobacter denitrificans OCh 114 4195356 YP_683661.1 CDS RD1_3491 NC_008209.1 3360369 3360671 D hypothetical protein 3360369..3360671 Roseobacter denitrificans OCh 114 4195357 YP_683662.1 CDS fabH NC_008209.1 3360770 3361894 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3360770..3361894 Roseobacter denitrificans OCh 114 4195358 YP_683663.1 CDS RD1_3493 NC_008209.1 3361913 3362377 R hypothetical protein complement(3361913..3362377) Roseobacter denitrificans OCh 114 4195359 YP_683664.1 CDS tdk NC_008209.1 3362618 3363241 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3362618..3363241 Roseobacter denitrificans OCh 114 4195360 YP_683665.1 CDS RD1_3495 NC_008209.1 3363238 3364191 R D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(3363238..3364191) Roseobacter denitrificans OCh 114 4195361 YP_683666.1 CDS csaA NC_008209.1 3364188 3364526 R chaperonin CsaA complement(3364188..3364526) Roseobacter denitrificans OCh 114 4195362 YP_683667.1 CDS proC NC_008209.1 3364519 3365334 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(3364519..3365334) Roseobacter denitrificans OCh 114 4195848 YP_683668.1 CDS RD1_3499 NC_008209.1 3365375 3365875 R hypothetical protein complement(3365375..3365875) Roseobacter denitrificans OCh 114 4195849 YP_683669.1 CDS RD1_3500 NC_008209.1 3366206 3366448 R hypothetical protein complement(3366206..3366448) Roseobacter denitrificans OCh 114 4195850 YP_683670.1 CDS lgt NC_008209.1 3366541 3367425 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3366541..3367425 Roseobacter denitrificans OCh 114 4195851 YP_683671.1 CDS RD1_3502 NC_008209.1 3367422 3368480 D hypothetical protein 3367422..3368480 Roseobacter denitrificans OCh 114 4195852 YP_683672.1 CDS RD1_3503 NC_008209.1 3368477 3369232 D hypothetical protein 3368477..3369232 Roseobacter denitrificans OCh 114 4195853 YP_683673.1 CDS RD1_3504 NC_008209.1 3369367 3369864 R AsnC family transcriptional regulator complement(3369367..3369864) Roseobacter denitrificans OCh 114 4195854 YP_683674.1 CDS trxB NC_008209.1 3370054 3371031 D thioredoxin-disulfide reductase 3370054..3371031 Roseobacter denitrificans OCh 114 4195855 YP_683675.1 CDS RD1_3506 NC_008209.1 3371132 3372487 D cytochrome P450 family protein 3371132..3372487 Roseobacter denitrificans OCh 114 4195856 YP_683676.1 CDS RD1_3507 NC_008209.1 3372550 3372774 R hypothetical protein complement(3372550..3372774) Roseobacter denitrificans OCh 114 4195857 YP_683677.1 CDS hspH NC_008209.1 3372779 3373192 R HSP20 family protein complement(3372779..3373192) Roseobacter denitrificans OCh 114 4195858 YP_683678.1 CDS purE NC_008209.1 3373658 3374146 D phosphoribosylaminoimidazole carboxylase catalytic subunit 3373658..3374146 Roseobacter denitrificans OCh 114 4195859 YP_683679.1 CDS purK NC_008209.1 3374139 3375206 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3374139..3375206 Roseobacter denitrificans OCh 114 4195860 YP_683680.1 CDS RD1_3512 NC_008209.1 3375211 3376275 R phosphonate metabolism domain-containing protein complement(3375211..3376275) Roseobacter denitrificans OCh 114 4195861 YP_683681.1 CDS RD1_3513 NC_008209.1 3376343 3377074 R lipase complement(3376343..3377074) Roseobacter denitrificans OCh 114 4195862 YP_683682.1 CDS RD1_3514 NC_008209.1 3377213 3377668 D hydrolase 3377213..3377668 Roseobacter denitrificans OCh 114 4195863 YP_683683.1 CDS RD1_3515 NC_008209.1 3377634 3378482 R hypothetical protein complement(3377634..3378482) Roseobacter denitrificans OCh 114 4195864 YP_683684.1 CDS groEL NC_008209.1 3378695 3380338 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL complement(3378695..3380338) Roseobacter denitrificans OCh 114 4195865 YP_683685.1 CDS groES NC_008209.1 3380394 3380705 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3380394..3380705) Roseobacter denitrificans OCh 114 4195866 YP_683686.1 CDS RD1_3518 NC_008209.1 3380887 3381555 R hypothetical protein complement(3380887..3381555) Roseobacter denitrificans OCh 114 4195887 YP_683687.1 CDS RD1_3519 NC_008209.1 3381824 3382537 D hypothetical protein 3381824..3382537 Roseobacter denitrificans OCh 114 4195888 YP_683688.1 CDS ppaC NC_008209.1 3382700 3383620 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 3382700..3383620 Roseobacter denitrificans OCh 114 4195889 YP_683689.1 CDS RD1_3521 NC_008209.1 3383709 3384581 D hypothetical protein 3383709..3384581 Roseobacter denitrificans OCh 114 4195890 YP_683690.1 CDS RD1_3522 NC_008209.1 3384671 3385114 D MaoC-like protein 3384671..3385114 Roseobacter denitrificans OCh 114 4195891 YP_683691.1 CDS ribF NC_008209.1 3385175 3386107 D riboflavin biosynthesis protein RibF 3385175..3386107 Roseobacter denitrificans OCh 114 4195892 YP_683692.1 CDS RD1_3524 NC_008209.1 3386104 3386574 D hypothetical protein 3386104..3386574 Roseobacter denitrificans OCh 114 4195893 YP_683693.1 CDS ltaE NC_008209.1 3386574 3387611 D low-specificity L-threonine aldolase 3386574..3387611 Roseobacter denitrificans OCh 114 4195894 YP_683694.1 CDS RD1_3526 NC_008209.1 3387597 3388379 R alpha/beta hydrolase complement(3387597..3388379) Roseobacter denitrificans OCh 114 4195895 YP_683695.1 CDS RD1_3527 NC_008209.1 3388376 3388975 R hypothetical protein complement(3388376..3388975) Roseobacter denitrificans OCh 114 4195896 YP_683696.1 CDS RD1_3528 NC_008209.1 3389090 3390109 D ribose-phosphate pyrophosphokinase 3389090..3390109 Roseobacter denitrificans OCh 114 4195897 YP_683697.1 CDS RD1_3529 NC_008209.1 3390131 3390706 R lipoprotein complement(3390131..3390706) Roseobacter denitrificans OCh 114 4195898 YP_683698.1 CDS RD1_3530 NC_008209.1 3391589 3394030 R chemotaxis protein complement(3391589..3394030) Roseobacter denitrificans OCh 114 4195899 YP_683699.1 CDS atpC NC_008209.1 3394440 3394856 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon complement(3394440..3394856) Roseobacter denitrificans OCh 114 4195900 YP_683700.1 CDS atpD NC_008209.1 3394869 3396293 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(3394869..3396293) Roseobacter denitrificans OCh 114 4195901 YP_683701.1 CDS atpG NC_008209.1 3396313 3397188 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(3396313..3397188) Roseobacter denitrificans OCh 114 4195902 YP_683702.1 CDS atpA NC_008209.1 3397204 3398742 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(3397204..3398742) Roseobacter denitrificans OCh 114 4195903 YP_683703.1 CDS atpH NC_008209.1 3398743 3399303 R ATP synthase F1 subunit delta complement(3398743..3399303) Roseobacter denitrificans OCh 114 4195904 YP_683704.1 CDS RD1_3537 NC_008209.1 3399476 3399580 R hypothetical protein complement(3399476..3399580) Roseobacter denitrificans OCh 114 4195905 YP_683705.1 CDS RD1_3538 NC_008209.1 3399603 3400337 R hypothetical protein complement(3399603..3400337) Roseobacter denitrificans OCh 114 4195906 YP_683706.1 CDS gloB NC_008209.1 3400401 3401168 D hydroxyacylglutathione hydrolase 3400401..3401168 Roseobacter denitrificans OCh 114 4196229 YP_683707.1 CDS clpA NC_008209.1 3401344 3403665 D ATP-dependent Clp protease, ATP-binding subunit ClpA 3401344..3403665 Roseobacter denitrificans OCh 114 4196230 YP_683708.1 CDS RD1_3541 NC_008209.1 3404531 3404686 R hypothetical protein complement(3404531..3404686) Roseobacter denitrificans OCh 114 4196231 YP_683709.1 CDS RD1_3542 NC_008209.1 3405175 3410487 D ATP-dependent DNA helicase 3405175..3410487 Roseobacter denitrificans OCh 114 4196232 YP_683710.1 CDS pucB NC_008209.1 3410974 3411129 D light-harvesting protein B-800/850 subunit beta 3410974..3411129 Roseobacter denitrificans OCh 114 4196233 YP_683711.1 CDS pucA NC_008209.1 3411142 3411498 D light-harvesting protein B-800/850 subunit alpha 3411142..3411498 Roseobacter denitrificans OCh 114 4196234 YP_683712.1 CDS pucC NC_008209.1 3411599 3413056 D PucC protein 3411599..3413056 Roseobacter denitrificans OCh 114 4196235 YP_683713.1 CDS RD1_3546 NC_008209.1 3413053 3414102 D hypothetical protein 3413053..3414102 Roseobacter denitrificans OCh 114 4196236 YP_683714.1 CDS RD1_3547 NC_008209.1 3414211 3414600 R potassium efflux system protein complement(3414211..3414600) Roseobacter denitrificans OCh 114 4196237 YP_683715.1 CDS phaF NC_008209.1 3414597 3414884 R pH adaptation potassium efflux system protein complement(3414597..3414884) Roseobacter denitrificans OCh 114 4196238 YP_683716.1 CDS phaE NC_008209.1 3414881 3415381 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E complement(3414881..3415381) Roseobacter denitrificans OCh 114 4196239 YP_683717.1 CDS phaD NC_008209.1 3415383 3416924 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(3415383..3416924) Roseobacter denitrificans OCh 114 4196240 YP_683718.1 CDS phaC NC_008209.1 3416921 3417283 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(3416921..3417283) Roseobacter denitrificans OCh 114 4196241 YP_683719.1 CDS phaA NC_008209.1 3417285 3420158 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A complement(3417285..3420158) Roseobacter denitrificans OCh 114 4196242 YP_683720.1 CDS RD1_3554 NC_008209.1 3420368 3420853 D hypothetical protein 3420368..3420853 Roseobacter denitrificans OCh 114 4196243 YP_683721.1 CDS RD1_3553 NC_008209.1 3420371 3420712 R hypothetical protein complement(3420371..3420712) Roseobacter denitrificans OCh 114 4196244 YP_683722.1 CDS RD1_3555 NC_008209.1 3420709 3420948 R hypothetical protein complement(3420709..3420948) Roseobacter denitrificans OCh 114 4196245 YP_683723.1 CDS hisB NC_008209.1 3421094 3421681 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3421094..3421681 Roseobacter denitrificans OCh 114 4196246 YP_683724.1 CDS hisH NC_008209.1 3421684 3422322 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3421684..3422322 Roseobacter denitrificans OCh 114 4196247 YP_683725.1 CDS RD1_3558 NC_008209.1 3422345 3423136 R hypothetical protein complement(3422345..3423136) Roseobacter denitrificans OCh 114 4195789 YP_683726.1 CDS RD1_3559 NC_008209.1 3423224 3423613 R hypothetical protein complement(3423224..3423613) Roseobacter denitrificans OCh 114 4195790 YP_683727.1 CDS hisA NC_008209.1 3423770 3424489 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3423770..3424489 Roseobacter denitrificans OCh 114 4195791 YP_683728.1 CDS hisF NC_008209.1 3424566 3425327 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3424566..3425327 Roseobacter denitrificans OCh 114 4195792 YP_683729.1 CDS hisE NC_008209.1 3425324 3425641 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 3425324..3425641 Roseobacter denitrificans OCh 114 4195793 YP_683730.1 CDS RD1_3563 NC_008209.1 3425651 3426121 R CoA-binding domain-containing protein complement(3425651..3426121) Roseobacter denitrificans OCh 114 4195794 YP_683731.1 CDS RD1_3564 NC_008209.1 3426331 3426645 R hypothetical protein complement(3426331..3426645) Roseobacter denitrificans OCh 114 4195795 YP_683732.1 CDS RD1_3565 NC_008209.1 3426673 3427446 R RNA methyltransferase complement(3426673..3427446) Roseobacter denitrificans OCh 114 4195796 YP_683733.1 CDS RD1_3567 NC_008209.1 3427711 3429366 R Na+/Pi-cotransporter complement(3427711..3429366) Roseobacter denitrificans OCh 114 4195798 YP_683734.1 CDS RD1_3568 NC_008209.1 3429382 3430185 R Ser/Thr protein phosphatase family protein complement(3429382..3430185) Roseobacter denitrificans OCh 114 4195799 YP_683735.1 CDS RD1_3569 NC_008209.1 3430182 3430991 R inner membrane component of binding-protein-dependent transport system complement(3430182..3430991) Roseobacter denitrificans OCh 114 4195800 YP_683736.1 CDS RD1_3570 NC_008209.1 3430988 3431881 R glycerol-3-phosphate ABC transporter permease complement(3430988..3431881) Roseobacter denitrificans OCh 114 4195801 YP_683737.1 CDS RD1_3571 NC_008209.1 3431946 3433214 R glycerol-3-phosphate ABC transporter substrate-binding protein complement(3431946..3433214) Roseobacter denitrificans OCh 114 4195802 YP_683738.1 CDS RD1_3572 NC_008209.1 3433262 3434281 R sugar ABC transporter ATP-binding protein complement(3433262..3434281) Roseobacter denitrificans OCh 114 4195803 YP_683739.1 CDS deoR NC_008209.1 3434278 3435057 R DeoR family transcriptional regulator complement(3434278..3435057) Roseobacter denitrificans OCh 114 4195804 YP_683740.1 CDS RD1_3574 NC_008209.1 3435219 3435539 R ABC transporter substrate-binding protein complement(3435219..3435539) Roseobacter denitrificans OCh 114 4195805 YP_683741.1 CDS RD1_3575 NC_008209.1 3435619 3435897 R sugar ABC transporter ATP-binding protein complement(3435619..3435897) Roseobacter denitrificans OCh 114 4195806 YP_683742.1 CDS RD1_3576 NC_008209.1 3435912 3436172 R sugar ABC transporter ATP-binding protein complement(3435912..3436172) Roseobacter denitrificans OCh 114 4195807 YP_683743.1 CDS RD1_3577 NC_008209.1 3436733 3439117 R sensory box histidine kinase/response regulator complement(3436733..3439117) Roseobacter denitrificans OCh 114 4195153 YP_683744.1 CDS RD1_3578 NC_008209.1 3439235 3439729 R hypothetical protein complement(3439235..3439729) Roseobacter denitrificans OCh 114 4195154 YP_683745.1 CDS RD1_3579 NC_008209.1 3439994 3440608 D LuxR family DNA-binding response regulator 3439994..3440608 Roseobacter denitrificans OCh 114 4195155 YP_683746.1 CDS RD1_3580 NC_008209.1 3440772 3441335 D hypothetical protein 3440772..3441335 Roseobacter denitrificans OCh 114 4195156 YP_683747.1 CDS mcpA NC_008209.1 3441840 3444134 D methyl-accepting chemotaxis protein McpA 3441840..3444134 Roseobacter denitrificans OCh 114 4195157 YP_683748.1 CDS RD1_3583 NC_008209.1 3444591 3445553 D AraC family transcriptional regulator 3444591..3445553 Roseobacter denitrificans OCh 114 4195158 YP_683749.1 CDS hyuA NC_008209.1 3445641 3447668 D hydantoin utilization protein A 3445641..3447668 Roseobacter denitrificans OCh 114 4195159 YP_683750.1 CDS RD1_3585 NC_008209.1 3447673 3449628 D hydantoin utilization protein B 3447673..3449628 Roseobacter denitrificans OCh 114 4195160 YP_683751.1 CDS RD1_3586 NC_008209.1 3449631 3449741 R hypothetical protein complement(3449631..3449741) Roseobacter denitrificans OCh 114 4195161 YP_683752.1 CDS RD1_3587 NC_008209.1 3449735 3450463 D branched-chain amino acid ABC transporter ATP-binding protein 3449735..3450463 Roseobacter denitrificans OCh 114 4195162 YP_683753.1 CDS RD1_3588 NC_008209.1 3450463 3451197 D branched chain amino acid ABC transporter ATP-binding protein 3450463..3451197 Roseobacter denitrificans OCh 114 4195163 YP_683754.1 CDS RD1_3589 NC_008209.1 3451194 3452108 D branched-chain amino acid ABC transporter permease 3451194..3452108 Roseobacter denitrificans OCh 114 4195164 YP_683755.1 CDS RD1_3590 NC_008209.1 3452112 3453140 D branched-chain amino acid ABC transporter permease 3452112..3453140 Roseobacter denitrificans OCh 114 4195165 YP_683756.1 CDS RD1_3591 NC_008209.1 3453181 3454350 D branched-chain amino acid ABC transporter substrate-binding protein 3453181..3454350 Roseobacter denitrificans OCh 114 4195166 YP_683757.1 CDS RD1_3592 NC_008209.1 3454820 3455929 R hypothetical protein complement(3454820..3455929) Roseobacter denitrificans OCh 114 4195167 YP_683758.1 CDS RD1_3593 NC_008209.1 3455875 3456951 R multidrug resistance efflux pump complement(3455875..3456951) Roseobacter denitrificans OCh 114 4195168 YP_683759.1 CDS RD1_3594 NC_008209.1 3457518 3458432 R two-component response regulator complement(3457518..3458432) Roseobacter denitrificans OCh 114 4195169 YP_683760.1 CDS RD1_3595 NC_008209.1 3458416 3461763 R two-component hybrid sensor and regulator complement(3458416..3461763) Roseobacter denitrificans OCh 114 4195170 YP_683761.1 CDS RD1_3596 NC_008209.1 3461997 3463268 D ABC transporter substrate-binding protein 3461997..3463268 Roseobacter denitrificans OCh 114 4195171 YP_683762.1 CDS RD1_3598 NC_008209.1 3463340 3464266 D branched-chain amino acid transport system permease component 3463340..3464266 Roseobacter denitrificans OCh 114 4195075 YP_683763.1 CDS RD1_3599 NC_008209.1 3464279 3465412 D branched-chain amino acid ABC transporter permease 3464279..3465412 Roseobacter denitrificans OCh 114 4195076 YP_683764.1 CDS RD1_3600 NC_008209.1 3465424 3466179 D branched-chain amino acid ABC transport, ATP-binding protein 3465424..3466179 Roseobacter denitrificans OCh 114 4195077 YP_683765.1 CDS RD1_3601 NC_008209.1 3466191 3466880 D ABC transporter ATP-binding protein 3466191..3466880 Roseobacter denitrificans OCh 114 4195078 YP_683766.1 CDS fmdA NC_008209.1 3466905 3468134 D amidase 3466905..3468134 Roseobacter denitrificans OCh 114 4195079 YP_683767.1 CDS RD1_3603 NC_008209.1 3468200 3468529 D hypothetical protein 3468200..3468529 Roseobacter denitrificans OCh 114 4195080 YP_683768.1 CDS RD1_3604 NC_008209.1 3468607 3468795 R hypothetical protein complement(3468607..3468795) Roseobacter denitrificans OCh 114 4195081 YP_683769.1 CDS RD1_3605 NC_008209.1 3469096 3469686 D hypothetical protein 3469096..3469686 Roseobacter denitrificans OCh 114 4195082 YP_683770.1 CDS RD1_3606 NC_008209.1 3469686 3470480 D hypothetical protein 3469686..3470480 Roseobacter denitrificans OCh 114 4195083 YP_683771.1 CDS RD1_3607 NC_008209.1 3470580 3471884 R C4-dicarboxylate transport system, permease complement(3470580..3471884) Roseobacter denitrificans OCh 114 4195084 YP_683772.1 CDS RD1_3608 NC_008209.1 3471871 3472365 R TRAP transporter DctQ-like membrane protein complement(3471871..3472365) Roseobacter denitrificans OCh 114 4195085 YP_683773.1 CDS RD1_3609 NC_008209.1 3472433 3473407 R C4-dicarboxylate transport system, substrate-binding protein complement(3472433..3473407) Roseobacter denitrificans OCh 114 4195086 YP_683774.1 CDS thiM NC_008209.1 3473809 3474582 D hydroxyethylthiazole kinase 3473809..3474582 Roseobacter denitrificans OCh 114 4195087 YP_683775.1 CDS thiDE NC_008209.1 3474579 3475223 D bifunctional ThiED protein 3474579..3475223 Roseobacter denitrificans OCh 114 4195088 YP_683776.1 CDS thiD NC_008209.1 3475220 3476029 D phosphomethylpyrimidine kinase 3475220..3476029 Roseobacter denitrificans OCh 114 4195089 YP_683777.1 CDS tenA NC_008209.1 3476083 3476769 D transcriptional regulator 3476083..3476769 Roseobacter denitrificans OCh 114 4195090 YP_683778.1 CDS RD1_3614 NC_008209.1 3476844 3477809 R glycerone kinase complement(3476844..3477809) Roseobacter denitrificans OCh 114 4195091 YP_683779.1 CDS RD1_3615 NC_008209.1 3477980 3479311 D hypothetical protein 3477980..3479311 Roseobacter denitrificans OCh 114 4195092 YP_683780.1 CDS RD1_3616 NC_008209.1 3479333 3480058 D short chain dehydrogenase/reductase family oxidoreductase 3479333..3480058 Roseobacter denitrificans OCh 114 4195093 YP_683781.1 CDS xylB NC_008209.1 3480139 3481680 D xylulose kinase 3480139..3481680 Roseobacter denitrificans OCh 114 4195094 YP_683782.1 CDS RD1_3618 NC_008209.1 3481677 3482582 D hydrolase 3481677..3482582 Roseobacter denitrificans OCh 114 4198891 YP_683783.1 CDS RD1_3619 NC_008209.1 3482918 3483841 D ABC transporter permease 3482918..3483841 Roseobacter denitrificans OCh 114 4198892 YP_683784.1 CDS RD1_3620 NC_008209.1 3483838 3484731 D sugar ABC transporter permease 3483838..3484731 Roseobacter denitrificans OCh 114 4198893 YP_683785.1 CDS RD1_3621 NC_008209.1 3484894 3486315 D ABC transporter substrate-binding protein 3484894..3486315 Roseobacter denitrificans OCh 114 4198894 YP_683786.1 CDS RD1_3622 NC_008209.1 3486425 3487504 D sn-glycerol-3-phosphate ABC transporter ATP-binding protein 3486425..3487504 Roseobacter denitrificans OCh 114 4198895 YP_683787.1 CDS xdh NC_008209.1 3487525 3488559 D D-xylulose reductase 3487525..3488559 Roseobacter denitrificans OCh 114 4198896 YP_683788.1 CDS rpiB NC_008209.1 3488673 3489128 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(3488673..3489128) Roseobacter denitrificans OCh 114 4198897 YP_683789.1 CDS tpiA NC_008209.1 3489125 3489901 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3489125..3489901) Roseobacter denitrificans OCh 114 4198898 YP_683790.1 CDS RD1_3626 NC_008209.1 3489935 3490867 R hypothetical protein complement(3489935..3490867) Roseobacter denitrificans OCh 114 4198899 YP_683791.1 CDS RD1_3628 NC_008209.1 3490867 3491697 R hydrolase complement(3490867..3491697) Roseobacter denitrificans OCh 114 4198900 YP_683792.1 CDS xylB NC_008209.1 3491694 3492932 R xylulose kinase complement(3491694..3492932) Roseobacter denitrificans OCh 114 4198901 YP_683793.1 CDS RD1_3630 NC_008209.1 3492925 3493902 R hypothetical protein complement(3492925..3493902) Roseobacter denitrificans OCh 114 4198902 YP_683794.1 CDS glpD NC_008209.1 3493899 3495398 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(3493899..3495398) Roseobacter denitrificans OCh 114 4198903 YP_683795.1 CDS fucA NC_008209.1 3495395 3496048 R L-fuculose phosphate aldolase complement(3495395..3496048) Roseobacter denitrificans OCh 114 4198904 YP_683796.1 CDS serA NC_008209.1 3496053 3497093 R D-3-phosphoglycerate dehydrogenase complement(3496053..3497093) Roseobacter denitrificans OCh 114 4198905 YP_683797.1 CDS RD1_3634 NC_008209.1 3497086 3498654 R FGGY family of carbohydrate kinases complement(3497086..3498654) Roseobacter denitrificans OCh 114 4198906 YP_683798.1 CDS RD1_3635 NC_008209.1 3498651 3499775 R sugar ABC transporter ATP-binding protein complement(3498651..3499775) Roseobacter denitrificans OCh 114 4198907 YP_683799.1 CDS ugpC NC_008209.1 3499772 3500881 R sn-glycerol-3-phosphate ABC transporter ATP-binding protein complement(3499772..3500881) Roseobacter denitrificans OCh 114 4198908 YP_683800.1 CDS RD1_3638 NC_008209.1 3500885 3501742 R sugar ABC transporter permease complement(3500885..3501742) Roseobacter denitrificans OCh 114 4198909 YP_683801.1 CDS RD1_3639 NC_008209.1 3501753 3502676 R ABC transporter permease complement(3501753..3502676) Roseobacter denitrificans OCh 114 4195481 YP_683802.1 CDS RD1_3640 NC_008209.1 3502793 3504238 R sugar ABC transporter substrate-binding complement(3502793..3504238) Roseobacter denitrificans OCh 114 4195482 YP_683803.1 CDS eryD NC_008209.1 3504269 3505225 R ery operon repressor complement(3504269..3505225) Roseobacter denitrificans OCh 114 4195483 YP_683804.1 CDS RD1_3642 NC_008209.1 3505560 3506342 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 3505560..3506342 Roseobacter denitrificans OCh 114 4195484 YP_683805.1 CDS kynU NC_008209.1 3506535 3507743 R kynureninase complement(3506535..3507743) Roseobacter denitrificans OCh 114 4195485 YP_683806.1 CDS RD1_3645 NC_008209.1 3507993 3509618 R sulfatase family protein complement(3507993..3509618) Roseobacter denitrificans OCh 114 4195486 YP_683807.1 CDS RD1_3647 NC_008209.1 3509692 3510723 R TRAP-type transporter periplasmic component complement(3509692..3510723) Roseobacter denitrificans OCh 114 4195487 YP_683808.1 CDS RD1_3648 NC_008209.1 3510744 3512603 R hypothetical protein complement(3510744..3512603) Roseobacter denitrificans OCh 114 4195488 YP_683809.1 CDS RD1_3649 NC_008209.1 3512727 3513515 D transcriptional regulator 3512727..3513515 Roseobacter denitrificans OCh 114 4195489 YP_683810.1 CDS RD1_3650 NC_008209.1 3513688 3514236 R MarR family transcriptional regulator complement(3513688..3514236) Roseobacter denitrificans OCh 114 4195490 YP_683811.1 CDS hmgA NC_008209.1 3514405 3515754 D An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 3514405..3515754 Roseobacter denitrificans OCh 114 4195491 YP_683812.1 CDS maiA NC_008209.1 3515760 3516395 D maleylacetoacetate isomerase 3515760..3516395 Roseobacter denitrificans OCh 114 4195492 YP_683813.1 CDS fahA NC_008209.1 3516406 3517656 D fumarylacetoacetase 3516406..3517656 Roseobacter denitrificans OCh 114 4195493 YP_683814.1 CDS cybB NC_008209.1 3518094 3518633 D cytochrome b561 3518094..3518633 Roseobacter denitrificans OCh 114 4195494 YP_683815.1 CDS RD1_3655 NC_008209.1 3518695 3518817 R hypothetical protein complement(3518695..3518817) Roseobacter denitrificans OCh 114 4195495 YP_683816.1 CDS RD1_3656 NC_008209.1 3518732 3518842 R hypothetical protein complement(3518732..3518842) Roseobacter denitrificans OCh 114 4195496 YP_683817.1 CDS pabB NC_008209.1 3518832 3519932 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase complement(3518832..3519932) Roseobacter denitrificans OCh 114 4195497 YP_683818.1 CDS RD1_3658 NC_008209.1 3519962 3520255 R hypothetical protein complement(3519962..3520255) Roseobacter denitrificans OCh 114 4195498 YP_683819.1 CDS metH NC_008209.1 3520620 3523334 R methionine synthase complement(3520620..3523334) Roseobacter denitrificans OCh 114 4195499 YP_683820.1 CDS metH NC_008209.1 3523331 3524374 R methionine synthase complement(3523331..3524374) Roseobacter denitrificans OCh 114 4195500 YP_683821.1 CDS RD1_3661 NC_008209.1 3524487 3524660 R hypothetical protein complement(3524487..3524660) Roseobacter denitrificans OCh 114 4194941 YP_683822.1 CDS RD1_3662 NC_008209.1 3524828 3525718 D hypothetical protein 3524828..3525718 Roseobacter denitrificans OCh 114 4194942 YP_683823.1 CDS RD1_3663 NC_008209.1 3525817 3526131 R hypothetical protein complement(3525817..3526131) Roseobacter denitrificans OCh 114 4194943 YP_683824.1 CDS dmsA NC_008209.1 3526289 3528961 R dimethyl sulfoxide reductase complement(3526289..3528961) Roseobacter denitrificans OCh 114 4194944 YP_683825.1 CDS torR NC_008209.1 3529076 3529780 D response regulator TorR 3529076..3529780 Roseobacter denitrificans OCh 114 4194945 YP_683826.1 CDS torS NC_008209.1 3529753 3531921 R sensor protein TorS complement(3529753..3531921) Roseobacter denitrificans OCh 114 4194946 YP_683827.1 CDS torT NC_008209.1 3532511 3533521 D periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3532511..3533521 Roseobacter denitrificans OCh 114 4194947 YP_683828.1 CDS RD1_3669 NC_008209.1 3533558 3534523 R hypothetical protein complement(3533558..3534523) Roseobacter denitrificans OCh 114 4194948 YP_683829.1 CDS RD1_3670 NC_008209.1 3534539 3535996 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3534539..3535996) Roseobacter denitrificans OCh 114 4194949 YP_683830.1 CDS grxC NC_008209.1 3536028 3536300 R glutaredoxin 3 complement(3536028..3536300) Roseobacter denitrificans OCh 114 4194950 YP_683831.1 CDS RD1_3672 NC_008209.1 3536352 3536852 R hypothetical protein complement(3536352..3536852) Roseobacter denitrificans OCh 114 4194951 YP_683832.1 CDS RD1_3673 NC_008209.1 3536990 3537586 D TetR family transcriptional regulator 3536990..3537586 Roseobacter denitrificans OCh 114 4194952 YP_683833.1 CDS RD1_3674 NC_008209.1 3537846 3538889 D pyridoxal-phosphate dependent protein 3537846..3538889 Roseobacter denitrificans OCh 114 4194953 YP_683834.1 CDS RD1_3675 NC_008209.1 3538900 3541917 R hypothetical protein complement(3538900..3541917) Roseobacter denitrificans OCh 114 4194954 YP_683835.1 CDS hutF NC_008209.1 3542059 3543423 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(3542059..3543423) Roseobacter denitrificans OCh 114 4194955 YP_683836.1 CDS hutI NC_008209.1 3543499 3544692 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 3543499..3544692 Roseobacter denitrificans OCh 114 4194956 YP_683837.1 CDS hutH NC_008209.1 3544689 3546230 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 3544689..3546230 Roseobacter denitrificans OCh 114 4194957 YP_683838.1 CDS hutG NC_008209.1 3546227 3547021 D N-formylglutamate amidohydrolase 3546227..3547021 Roseobacter denitrificans OCh 114 4194958 YP_683839.1 CDS RD1_3680 NC_008209.1 3547018 3548184 D CAIB/BAIF family protein 3547018..3548184 Roseobacter denitrificans OCh 114 4194959 YP_683840.1 CDS acdA NC_008209.1 3548181 3549326 D acyl-CoA dehydrogenase 3548181..3549326 Roseobacter denitrificans OCh 114 4195303 YP_683841.1 CDS hutU NC_008209.1 3549338 3551008 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 3549338..3551008 Roseobacter denitrificans OCh 114 4195304 YP_683842.1 CDS van NC_008209.1 3551026 3552066 D vanillate O-demethylase oxygenase 3551026..3552066 Roseobacter denitrificans OCh 114 4195305 YP_683843.1 CDS RD1_3684 NC_008209.1 3552104 3552907 D phytanoyl-CoA dioxygenase 3552104..3552907 Roseobacter denitrificans OCh 114 4195306 YP_683844.1 CDS RD1_3685 NC_008209.1 3553001 3553129 R hypothetical protein complement(3553001..3553129) Roseobacter denitrificans OCh 114 4195307 YP_683845.1 CDS RD1_3686 NC_008209.1 3553028 3553141 D hypothetical protein 3553028..3553141 Roseobacter denitrificans OCh 114 4195308 YP_683846.1 CDS RD1_3687 NC_008209.1 3553203 3553790 R cytochrome c family protein complement(3553203..3553790) Roseobacter denitrificans OCh 114 4195309 YP_683847.1 CDS sndH NC_008209.1 3553787 3554956 R L-sorbosone dehydrogenase complement(3553787..3554956) Roseobacter denitrificans OCh 114 4195310 YP_683848.1 CDS radC NC_008209.1 3555342 3556247 R DNA repair protein RadC complement(3555342..3556247) Roseobacter denitrificans OCh 114 4195311 YP_683849.1 CDS RD1_3691 NC_008209.1 3556240 3556341 D hypothetical protein 3556240..3556341 Roseobacter denitrificans OCh 114 4195312 YP_683850.1 CDS RD1_3692 NC_008209.1 3556349 3556492 R hypothetical protein complement(3556349..3556492) Roseobacter denitrificans OCh 114 4195313 YP_683851.1 CDS ilvD NC_008209.1 3556550 3558283 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3556550..3558283 Roseobacter denitrificans OCh 114 4195314 YP_683852.1 CDS RD1_3694 NC_008209.1 3558346 3558651 D hypothetical protein 3558346..3558651 Roseobacter denitrificans OCh 114 4195315 YP_683853.1 CDS RD1_3695 NC_008209.1 3558723 3560123 D hypothetical protein 3558723..3560123 Roseobacter denitrificans OCh 114 4195316 YP_683854.1 CDS htpG NC_008209.1 3560335 3562200 D molecular chaperone; heat shock protein 90 3560335..3562200 Roseobacter denitrificans OCh 114 4195317 YP_683855.1 CDS RD1_3697 NC_008209.1 3562295 3562792 D hypothetical protein 3562295..3562792 Roseobacter denitrificans OCh 114 4195318 YP_683856.1 CDS RD1_3698 NC_008209.1 3563000 3565516 D sodium/hydrogen exchanger family protein 3563000..3565516 Roseobacter denitrificans OCh 114 4195319 YP_683857.1 CDS RD1_3699 NC_008209.1 3565691 3566935 D hypothetical protein 3565691..3566935 Roseobacter denitrificans OCh 114 4195320 YP_683858.1 CDS RD1_3700 NC_008209.1 3567559 3570063 R diguanylate cyclase complement(3567559..3570063) Roseobacter denitrificans OCh 114 4195321 YP_683859.1 CDS RD1_3701 NC_008209.1 3570142 3570522 D hypothetical protein 3570142..3570522 Roseobacter denitrificans OCh 114 4195322 YP_683860.1 CDS RD1_3702 NC_008209.1 3570519 3572144 D dihydroxyacetone kinase 3570519..3572144 Roseobacter denitrificans OCh 114 4196120 YP_683861.1 CDS RD1_3703 NC_008209.1 3572461 3573588 D oxidoreductase 3572461..3573588 Roseobacter denitrificans OCh 114 4196121 YP_683862.1 CDS xylB NC_008209.1 3573593 3575029 D xylulose kinase 3573593..3575029 Roseobacter denitrificans OCh 114 4196122 YP_683863.1 CDS xylA NC_008209.1 3575033 3576334 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3575033..3576334 Roseobacter denitrificans OCh 114 4196123 YP_683864.1 CDS RD1_3706 NC_008209.1 3576454 3578253 R monooxygenase complement(3576454..3578253) Roseobacter denitrificans OCh 114 4196124 YP_683865.1 CDS RD1_3707 NC_008209.1 3578399 3578566 R hypothetical protein complement(3578399..3578566) Roseobacter denitrificans OCh 114 4196125 YP_683866.1 CDS RD1_3708 NC_008209.1 3578656 3579810 R hypothetical protein complement(3578656..3579810) Roseobacter denitrificans OCh 114 4196126 YP_683867.1 CDS RD1_3709 NC_008209.1 3579846 3581825 R hypothetical protein complement(3579846..3581825) Roseobacter denitrificans OCh 114 4196127 YP_683868.1 CDS RD1_3710 NC_008209.1 3582184 3582714 D hypothetical protein 3582184..3582714 Roseobacter denitrificans OCh 114 4196128 YP_683869.1 CDS RD1_3711 NC_008209.1 3582711 3582866 D hypothetical protein 3582711..3582866 Roseobacter denitrificans OCh 114 4196129 YP_683870.1 CDS RD1_3712 NC_008209.1 3582786 3582887 R hypothetical protein complement(3582786..3582887) Roseobacter denitrificans OCh 114 4196130 YP_683871.1 CDS mpgP NC_008209.1 3582882 3583664 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 3582882..3583664 Roseobacter denitrificans OCh 114 4196131 YP_683872.1 CDS RD1_3714 NC_008209.1 3583836 3584900 D hypothetical protein 3583836..3584900 Roseobacter denitrificans OCh 114 4196132 YP_683873.1 CDS gtfA NC_008209.1 3584915 3586642 R sucrose phosphorylase complement(3584915..3586642) Roseobacter denitrificans OCh 114 4196133 YP_683874.1 CDS gnl NC_008209.1 3586847 3587779 R gluconolactonase complement(3586847..3587779) Roseobacter denitrificans OCh 114 4196134 YP_683875.1 CDS RD1_3717 NC_008209.1 3587739 3588503 R hypothetical protein complement(3587739..3588503) Roseobacter denitrificans OCh 114 4196135 YP_683876.1 CDS RD1_3718 NC_008209.1 3588500 3589435 R sugar ABC transporter permease complement(3588500..3589435) Roseobacter denitrificans OCh 114 4196136 YP_683877.1 CDS RD1_3719 NC_008209.1 3589435 3590349 R sugar ABC transporter permease complement(3589435..3590349) Roseobacter denitrificans OCh 114 4196137 YP_683878.1 CDS RD1_3720 NC_008209.1 3590426 3591754 R sugar ABC transporter substrate-binding protein complement(3590426..3591754) Roseobacter denitrificans OCh 114 4196138 YP_683879.1 CDS algS NC_008209.1 3591784 3592872 R alginate ABC transporter ATP-binding protein complement(3591784..3592872) Roseobacter denitrificans OCh 114 4195828 YP_683880.1 CDS RD1_3722 NC_008209.1 3592970 3594010 R LacI family transcriptional regulator complement(3592970..3594010) Roseobacter denitrificans OCh 114 4195829 YP_683881.1 CDS RD1_3723 NC_008209.1 3594623 3594763 R hypothetical protein complement(3594623..3594763) Roseobacter denitrificans OCh 114 4195830 YP_683882.1 CDS RD1_3724 NC_008209.1 3595018 3597630 R hypothetical protein complement(3595018..3597630) Roseobacter denitrificans OCh 114 4195831 YP_683883.1 CDS RD1_3725 NC_008209.1 3597762 3599489 D toxin secretion ABC transporter ATP binding protein 3597762..3599489 Roseobacter denitrificans OCh 114 4195832 YP_683884.1 CDS RD1_3726 NC_008209.1 3599489 3601579 D toxin secretion ABC transporter ATP binding component 3599489..3601579 Roseobacter denitrificans OCh 114 4195833 YP_683885.1 CDS lktD NC_008209.1 3601710 3602897 D leukotoxin secretion protein D 3601710..3602897 Roseobacter denitrificans OCh 114 4195834 YP_683886.1 CDS RD1_3730 NC_008209.1 3603081 3604406 D ABC1 family protein 3603081..3604406 Roseobacter denitrificans OCh 114 4195835 YP_683887.1 CDS RD1_3731 NC_008209.1 3604574 3605338 D hypothetical protein 3604574..3605338 Roseobacter denitrificans OCh 114 4195836 YP_683888.1 CDS RD1_3732 NC_008209.1 3605323 3605457 D hypothetical protein 3605323..3605457 Roseobacter denitrificans OCh 114 4195837 YP_683889.1 CDS RD1_3733 NC_008209.1 3605495 3607777 D mechanosensitive ion channel protein 3605495..3607777 Roseobacter denitrificans OCh 114 4195838 YP_683890.1 CDS RD1_3734 NC_008209.1 3607914 3611009 R hypothetical protein complement(3607914..3611009) Roseobacter denitrificans OCh 114 4195839 YP_683891.1 CDS RD1_3735 NC_008209.1 3611015 3615001 R hypothetical protein complement(3611015..3615001) Roseobacter denitrificans OCh 114 4195840 YP_683892.1 CDS RD1_3736 NC_008209.1 3615005 3622378 R hypothetical protein complement(3615005..3622378) Roseobacter denitrificans OCh 114 4195841 YP_683893.1 CDS rbsK NC_008209.1 3622757 3623659 R ribokinase complement(3622757..3623659) Roseobacter denitrificans OCh 114 4195842 YP_683894.1 CDS fucU NC_008209.1 3623660 3624106 R fucose operon FucU protein complement(3623660..3624106) Roseobacter denitrificans OCh 114 4195843 YP_683895.1 CDS RD1_3739 NC_008209.1 3624192 3625229 R sugar ABC transporter ATP-binding protein complement(3624192..3625229) Roseobacter denitrificans OCh 114 4195844 YP_683896.1 CDS RD1_3740 NC_008209.1 3625447 3627078 D solute-binding protein 3625447..3627078 Roseobacter denitrificans OCh 114 4195845 YP_683897.1 CDS RD1_3741 NC_008209.1 3627490 3627969 D hypothetical protein 3627490..3627969 Roseobacter denitrificans OCh 114 4195846 YP_683898.1 CDS RD1_3742 NC_008209.1 3628484 3629461 D sugar ABC transporter permease 3628484..3629461 Roseobacter denitrificans OCh 114 4195847 YP_683899.1 CDS RD1_3743 NC_008209.1 3629497 3630372 D sugar ABC transporter permease 3629497..3630372 Roseobacter denitrificans OCh 114 4196248 YP_683900.1 CDS RD1_3744 NC_008209.1 3630601 3632718 R sulfatase complement(3630601..3632718) Roseobacter denitrificans OCh 114 4196249 YP_683901.1 CDS RD1_3746 NC_008209.1 3632699 3632995 R hypothetical protein complement(3632699..3632995) Roseobacter denitrificans OCh 114 4196250 YP_683902.1 CDS RD1_3747 NC_008209.1 3633011 3633139 R hypothetical protein complement(3633011..3633139) Roseobacter denitrificans OCh 114 4196251 YP_683903.1 CDS RD1_3748 NC_008209.1 3633182 3633964 R hypothetical protein complement(3633182..3633964) Roseobacter denitrificans OCh 114 4196252 YP_683904.1 CDS RD1_3749 NC_008209.1 3634009 3635463 R hypothetical protein complement(3634009..3635463) Roseobacter denitrificans OCh 114 4196253 YP_683905.1 CDS RD1_3750 NC_008209.1 3635617 3636390 R hypothetical protein complement(3635617..3636390) Roseobacter denitrificans OCh 114 4196254 YP_683906.1 CDS RD1_3751 NC_008209.1 3636637 3637242 D transcriptional regulator 3636637..3637242 Roseobacter denitrificans OCh 114 4196255 YP_683907.1 CDS RD1_3752 NC_008209.1 3637400 3637498 R hypothetical protein complement(3637400..3637498) Roseobacter denitrificans OCh 114 4196256 YP_683908.1 CDS RD1_3753 NC_008209.1 3637550 3638467 R homocysteine S-methyltransferase complement(3637550..3638467) Roseobacter denitrificans OCh 114 4196257 YP_683909.1 CDS RD1_3754 NC_008209.1 3638589 3638768 D hypothetical protein 3638589..3638768 Roseobacter denitrificans OCh 114 4196258 YP_683910.1 CDS RD1_3755 NC_008209.1 3638814 3639818 R oxidoreductase complement(3638814..3639818) Roseobacter denitrificans OCh 114 4196259 YP_683911.1 CDS RD1_3756 NC_008209.1 3639887 3640690 R short chain dehydrogenase complement(3639887..3640690) Roseobacter denitrificans OCh 114 4196260 YP_683912.1 CDS RD1_3758 NC_008209.1 3640782 3641192 R hypothetical protein complement(3640782..3641192) Roseobacter denitrificans OCh 114 4196261 YP_683913.1 CDS RD1_3759 NC_008209.1 3641269 3642165 D LysR family transcriptional regulator 3641269..3642165 Roseobacter denitrificans OCh 114 4196262 YP_683914.1 CDS xylB NC_008209.1 3642301 3643788 R xylulose kinase complement(3642301..3643788) Roseobacter denitrificans OCh 114 4196263 YP_683915.1 CDS RD1_3761 NC_008209.1 3643824 3644015 R hypothetical protein complement(3643824..3644015) Roseobacter denitrificans OCh 114 4196264 YP_683916.1 CDS RD1_3762 NC_008209.1 3644056 3645084 D oxidoreductase 3644056..3645084 Roseobacter denitrificans OCh 114 4196265 YP_683917.1 CDS RD1_3763 NC_008209.1 3645092 3645934 D hypothetical protein 3645092..3645934 Roseobacter denitrificans OCh 114 4196266 YP_683918.1 CDS rbsK NC_008209.1 3645919 3646758 R ribokinase complement(3645919..3646758) Roseobacter denitrificans OCh 114 4195617 YP_683919.1 CDS xylA NC_008209.1 3646755 3647741 R xylose isomerase complement(3646755..3647741) Roseobacter denitrificans OCh 114 4195618 YP_683920.1 CDS RD1_3766 NC_008209.1 3647845 3648195 R hypothetical protein complement(3647845..3648195) Roseobacter denitrificans OCh 114 4195619 YP_683921.1 CDS RD1_3767 NC_008209.1 3648192 3649466 R hypothetical protein complement(3648192..3649466) Roseobacter denitrificans OCh 114 4195620 YP_683922.1 CDS RD1_3768 NC_008209.1 3649632 3650603 R hypothetical protein complement(3649632..3650603) Roseobacter denitrificans OCh 114 4195621 YP_683923.1 CDS RD1_3769 NC_008209.1 3650820 3651236 R universal stress family protein complement(3650820..3651236) Roseobacter denitrificans OCh 114 4195622 YP_683924.1 CDS RD1_3770 NC_008209.1 3651609 3652709 D solute-binding family 7 protein 3651609..3652709 Roseobacter denitrificans OCh 114 4195623 YP_683925.1 CDS RD1_3771 NC_008209.1 3653410 3654111 D TRAP transporter DctQ-like membrane protein 3653410..3654111 Roseobacter denitrificans OCh 114 4195624 YP_683926.1 CDS RD1_3772 NC_008209.1 3654115 3655470 D TRAP dicarboxylate transporter subunit DctM 3654115..3655470 Roseobacter denitrificans OCh 114 4195625 YP_683927.1 CDS pcaC NC_008209.1 3655601 3655984 D 4-carboxymuconolactone decarboxylase 3655601..3655984 Roseobacter denitrificans OCh 114 4195626 YP_683928.1 CDS pcaH NC_008209.1 3655981 3656703 D protocatechuate 3,4-dioxygenase subunit beta 3655981..3656703 Roseobacter denitrificans OCh 114 4195627 YP_683929.1 CDS pcaG NC_008209.1 3656706 3657293 D protocatechuate 3,4-dioxygenase subunit alpha 3656706..3657293 Roseobacter denitrificans OCh 114 4195628 YP_683930.1 CDS glk NC_008209.1 3657297 3658244 R glucokinase complement(3657297..3658244) Roseobacter denitrificans OCh 114 4195629 YP_683931.1 CDS RD1_3777 NC_008209.1 3658388 3659005 R hypothetical protein complement(3658388..3659005) Roseobacter denitrificans OCh 114 4195630 YP_683932.1 CDS hemA NC_008209.1 3659061 3660284 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(3659061..3660284) Roseobacter denitrificans OCh 114 4195631 YP_683933.1 CDS RD1_3779 NC_008209.1 3660242 3660358 R hypothetical protein complement(3660242..3660358) Roseobacter denitrificans OCh 114 4195632 YP_683934.1 CDS RD1_3780 NC_008209.1 3660516 3660914 R hypothetical protein complement(3660516..3660914) Roseobacter denitrificans OCh 114 4195633 YP_683935.1 CDS RD1_3781 NC_008209.1 3660914 3662176 R hypothetical protein complement(3660914..3662176) Roseobacter denitrificans OCh 114 4195634 YP_683936.1 CDS RD1_3782 NC_008209.1 3662207 3663214 R AraC family transcriptional regulator complement(3662207..3663214) Roseobacter denitrificans OCh 114 4195635 YP_683937.1 CDS RD1_3783 NC_008209.1 3663360 3664127 R hypothetical protein complement(3663360..3664127) Roseobacter denitrificans OCh 114 4195636 YP_683938.1 CDS RD1_3784 NC_008209.1 3664124 3664774 R aldolase complement(3664124..3664774) Roseobacter denitrificans OCh 114 4198833 YP_683939.1 CDS RD1_3785 NC_008209.1 3664771 3666039 R hypothetical protein complement(3664771..3666039) Roseobacter denitrificans OCh 114 4198834 YP_683940.1 CDS mmsB NC_008209.1 3666063 3666965 R 3-hydroxyisobutyrate dehydrogenase complement(3666063..3666965) Roseobacter denitrificans OCh 114 4198835 YP_683941.1 CDS gntR NC_008209.1 3667048 3667743 R GntR family transcriptional regulator complement(3667048..3667743) Roseobacter denitrificans OCh 114 4198836 YP_683942.1 CDS RD1_3788 NC_008209.1 3667716 3668735 R NADH-dependent dyhydrogenase complement(3667716..3668735) Roseobacter denitrificans OCh 114 4198837 YP_683943.1 CDS leuB NC_008209.1 3668732 3669820 R 3-isopropylmalate dehydrogenase complement(3668732..3669820) Roseobacter denitrificans OCh 114 4198838 YP_683944.1 CDS RD1_3790 NC_008209.1 3669957 3670247 D hypothetical protein 3669957..3670247 Roseobacter denitrificans OCh 114 4198839 YP_683945.1 CDS RD1_3791 NC_008209.1 3670244 3671041 D metallo-beta-lactamase family protein 3670244..3671041 Roseobacter denitrificans OCh 114 4198840 YP_683946.1 CDS ureD NC_008209.1 3671168 3671989 D urease accessory protein UreD 3671168..3671989 Roseobacter denitrificans OCh 114 4198841 YP_683947.1 CDS ureA NC_008209.1 3671993 3672295 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3671993..3672295 Roseobacter denitrificans OCh 114 4198842 YP_683948.1 CDS ureB NC_008209.1 3672305 3672610 D urease subunit beta 3672305..3672610 Roseobacter denitrificans OCh 114 4198843 YP_683949.1 CDS RD1_3797 NC_008209.1 3672643 3673464 D cyclase 3672643..3673464 Roseobacter denitrificans OCh 114 4198844 YP_683950.1 CDS RD1_3798 NC_008209.1 3673464 3673859 D hypothetical protein 3673464..3673859 Roseobacter denitrificans OCh 114 4198845 YP_683951.1 CDS ureC NC_008209.1 3674337 3676046 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3674337..3676046 Roseobacter denitrificans OCh 114 4198846 YP_683952.1 CDS RD1_3801 NC_008209.1 3676043 3676585 D hypothetical protein 3676043..3676585 Roseobacter denitrificans OCh 114 4198847 YP_683953.1 CDS ureE NC_008209.1 3676713 3677204 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3676713..3677204 Roseobacter denitrificans OCh 114 4198848 YP_683954.1 CDS ureF NC_008209.1 3677167 3677835 D urease accessory protein UreF 3677167..3677835 Roseobacter denitrificans OCh 114 4198849 YP_683955.1 CDS ureG NC_008209.1 3677832 3678500 D urease accessory protein UreG 3677832..3678500 Roseobacter denitrificans OCh 114 4198850 YP_683956.1 CDS flhA NC_008209.1 3678510 3679622 R glutathione-dependent formaldehyde dehydrogenase complement(3678510..3679622) Roseobacter denitrificans OCh 114 4198851 YP_683957.1 CDS RD1_3807 NC_008209.1 3679675 3680697 R LacI family transcriptional regulator complement(3679675..3680697) Roseobacter denitrificans OCh 114 4194998 YP_683958.1 CDS hisD NC_008209.1 3680861 3682168 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3680861..3682168 Roseobacter denitrificans OCh 114 4194999 YP_683959.1 CDS gno NC_008209.1 3682174 3682926 D gluconate 5-dehydrogenase 3682174..3682926 Roseobacter denitrificans OCh 114 4195000 YP_683960.1 CDS gutB NC_008209.1 3682923 3683930 D sorbitol dehydrogenase 3682923..3683930 Roseobacter denitrificans OCh 114 4195001 YP_683961.1 CDS RD1_3811 NC_008209.1 3683962 3684366 D universal stress family protein 3683962..3684366 Roseobacter denitrificans OCh 114 4195002 YP_683962.1 CDS RD1_3812 NC_008209.1 3684432 3684938 D decarboxylase 3684432..3684938 Roseobacter denitrificans OCh 114 4195003 YP_683963.1 CDS bcpC NC_008209.1 3684935 3685489 D 3-phosphonopyruvate decarboxylase 3684935..3685489 Roseobacter denitrificans OCh 114 4195004 YP_683964.1 CDS lldD NC_008209.1 3685494 3686597 D L-lactate dehydrogenase (cytochrome) 3685494..3686597 Roseobacter denitrificans OCh 114 4195005 YP_683965.1 CDS bluB NC_008209.1 3686752 3687375 R cobalamin biosynthesis protein BluB complement(3686752..3687375) Roseobacter denitrificans OCh 114 4195006 YP_683966.1 CDS cobF NC_008209.1 3687436 3688179 R catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase complement(3687436..3688179) Roseobacter denitrificans OCh 114 4195007 YP_683967.1 CDS cobA NC_008209.1 3688188 3688907 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(3688188..3688907) Roseobacter denitrificans OCh 114 4195008 YP_683968.1 CDS cobB NC_008209.1 3688904 3690220 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(3688904..3690220) Roseobacter denitrificans OCh 114 4195009 YP_683969.1 CDS cobM NC_008209.1 3690213 3691007 R precorrin-4 C(11)-methyltransferase complement(3690213..3691007) Roseobacter denitrificans OCh 114 4195010 YP_683970.1 CDS RD1_3820 NC_008209.1 3691004 3691372 R hypothetical protein complement(3691004..3691372) Roseobacter denitrificans OCh 114 4195011 YP_683971.1 CDS cobl NC_008209.1 3691369 3692568 R precorrin-6Y C(5,15)-methyltransferase complement(3691369..3692568) Roseobacter denitrificans OCh 114 4195012 YP_683972.1 CDS cobK NC_008209.1 3692567 3693322 D precorrin-6A reductase 3692567..3693322 Roseobacter denitrificans OCh 114 4195013 YP_683973.1 CDS cobJ NC_008209.1 3693298 3694047 R precorrin-3B C(17)-methyltransferase complement(3693298..3694047) Roseobacter denitrificans OCh 114 4195014 YP_683974.1 CDS cobI NC_008209.1 3694044 3694769 R precorrin-2 C(20)-methyltransferase complement(3694044..3694769) Roseobacter denitrificans OCh 114 4195015 YP_683975.1 CDS cobH NC_008209.1 3694766 3695395 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(3694766..3695395) Roseobacter denitrificans OCh 114 4195016 YP_683976.1 CDS cobG NC_008209.1 3695398 3696537 R precorrin-3B synthase complement(3695398..3696537) Roseobacter denitrificans OCh 114 4195017 YP_683977.1 CDS cobN NC_008209.1 3696534 3699800 R with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN complement(3696534..3699800) Roseobacter denitrificans OCh 114 4198929 YP_683978.1 CDS cobW NC_008209.1 3699807 3700862 R cobalamin biosynthesis protein CobW complement(3699807..3700862) Roseobacter denitrificans OCh 114 4198930 YP_683979.1 CDS RD1_3829 NC_008209.1 3700855 3701232 R hypothetical protein complement(3700855..3701232) Roseobacter denitrificans OCh 114 4198931 YP_683980.1 CDS ackA NC_008209.1 3701817 3702968 D acetate kinase 3701817..3702968 Roseobacter denitrificans OCh 114 4198932 YP_683981.1 CDS RD1_3832 NC_008209.1 3702994 3704424 R cardiolipin synthase complement(3702994..3704424) Roseobacter denitrificans OCh 114 4198933 YP_683982.1 CDS RD1_3833 NC_008209.1 3704421 3705104 R hypothetical protein complement(3704421..3705104) Roseobacter denitrificans OCh 114 4198934 YP_683983.1 CDS RD1_3834 NC_008209.1 3705395 3705589 D hypothetical protein 3705395..3705589 Roseobacter denitrificans OCh 114 4198935 YP_683984.1 CDS RD1_3835 NC_008209.1 3705678 3707747 R chain length determinant domain-containing protein complement(3705678..3707747) Roseobacter denitrificans OCh 114 4198936 YP_683985.1 CDS RD1_3836 NC_008209.1 3707753 3707875 R hypothetical protein complement(3707753..3707875) Roseobacter denitrificans OCh 114 4198937 YP_683986.1 CDS RD1_3837 NC_008209.1 3708053 3708892 D N-deacetylase/N-sulfotransferase 3708053..3708892 Roseobacter denitrificans OCh 114 4198938 YP_683987.1 CDS RD1_3838 NC_008209.1 3708889 3710160 D hypothetical protein 3708889..3710160 Roseobacter denitrificans OCh 114 4198939 YP_683988.1 CDS RD1_3839 NC_008209.1 3710189 3711496 D polysaccharide biosynthesis associate 3710189..3711496 Roseobacter denitrificans OCh 114 4198940 YP_683989.1 CDS RD1_3840 NC_008209.1 3711500 3712546 R hypothetical protein complement(3711500..3712546) Roseobacter denitrificans OCh 114 4198941 YP_683990.1 CDS RD1_3841 NC_008209.1 3712802 3714031 D polysaccharide biosynthesis/export protein 3712802..3714031 Roseobacter denitrificans OCh 114 4198942 YP_683991.1 CDS RD1_3842 NC_008209.1 3714050 3715282 R hypothetical protein complement(3714050..3715282) Roseobacter denitrificans OCh 114 4198943 YP_683992.1 CDS RD1_3844 NC_008209.1 3715550 3716749 D hypothetical protein 3715550..3716749 Roseobacter denitrificans OCh 114 4198944 YP_683993.1 CDS RD1_3845 NC_008209.1 3716829 3717974 D glycoside hydrolase family protein 3716829..3717974 Roseobacter denitrificans OCh 114 4198945 YP_683994.1 CDS RD1_3846 NC_008209.1 3718046 3718156 D hypothetical protein 3718046..3718156 Roseobacter denitrificans OCh 114 4198946 YP_683995.1 CDS RD1_3847 NC_008209.1 3718182 3718445 R hypothetical protein complement(3718182..3718445) Roseobacter denitrificans OCh 114 4198947 YP_683996.1 CDS RD1_3848 NC_008209.1 3718751 3719683 R hypothetical protein complement(3718751..3719683) Roseobacter denitrificans OCh 114 4195421 YP_683997.1 CDS asnO NC_008209.1 3719683 3721383 R asparagine synthetase complement(3719683..3721383) Roseobacter denitrificans OCh 114 4195422 YP_683998.1 CDS RD1_3850 NC_008209.1 3721569 3722000 R hypothetical protein complement(3721569..3722000) Roseobacter denitrificans OCh 114 4195423 YP_683999.1 CDS RD1_3851 NC_008209.1 3722004 3722291 R hypothetical protein complement(3722004..3722291) Roseobacter denitrificans OCh 114 4195424 YP_684000.1 CDS spaT NC_008209.1 3722770 3724593 R subtilin transport ATP-binding protein complement(3722770..3724593) Roseobacter denitrificans OCh 114 4195425 YP_684001.1 CDS RD1_3853 NC_008209.1 3724712 3725389 R sugar transferase complement(3724712..3725389) Roseobacter denitrificans OCh 114 4195426 YP_684002.1 CDS RD1_3854 NC_008209.1 3725887 3726576 D DNA-binding protein 3725887..3726576 Roseobacter denitrificans OCh 114 4195427 YP_684003.1 CDS RD1_3855 NC_008209.1 3726656 3727102 R hypothetical protein complement(3726656..3727102) Roseobacter denitrificans OCh 114 4195428 YP_684004.1 CDS RD1_3856 NC_008209.1 3727104 3727490 R hypothetical protein complement(3727104..3727490) Roseobacter denitrificans OCh 114 4195429 YP_684005.1 CDS RD1_3857 NC_008209.1 3727512 3727625 D hypothetical protein 3727512..3727625 Roseobacter denitrificans OCh 114 4195430 YP_684006.1 CDS RD1_3858 NC_008209.1 3727592 3729964 R glycine cleavage T-protein (aminomethyl transferase) family protein complement(3727592..3729964) Roseobacter denitrificans OCh 114 4195431 YP_684007.1 CDS RD1_3859 NC_008209.1 3730052 3730201 R hypothetical protein complement(3730052..3730201) Roseobacter denitrificans OCh 114 4195432 YP_684008.1 CDS RD1_3860 NC_008209.1 3730253 3731353 R racemase complement(3730253..3731353) Roseobacter denitrificans OCh 114 4195433 YP_684009.1 CDS RD1_3861 NC_008209.1 3731365 3732981 R GMC family oxidoreductase complement(3731365..3732981) Roseobacter denitrificans OCh 114 4195434 YP_684010.1 CDS RD1_3862 NC_008209.1 3732983 3733861 R ABC transporter permease complement(3732983..3733861) Roseobacter denitrificans OCh 114 4195435 YP_684011.1 CDS RD1_3863 NC_008209.1 3733807 3734700 R ABC transporter permease complement(3733807..3734700) Roseobacter denitrificans OCh 114 4195436 YP_684012.1 CDS RD1_3864 NC_008209.1 3734693 3735760 R spermidine/putrescine ABC transporter ATP-binding protein complement(3734693..3735760) Roseobacter denitrificans OCh 114 4195437 YP_684013.1 CDS RD1_3865 NC_008209.1 3735828 3736868 R polyamine ABC transporter periplasmic binding protein complement(3735828..3736868) Roseobacter denitrificans OCh 114 4195438 YP_684014.1 CDS RD1_3866 NC_008209.1 3736936 3738258 R oxidoreductase complement(3736936..3738258) Roseobacter denitrificans OCh 114 4195439 YP_684015.1 CDS lysR NC_008209.1 3738224 3739321 D LysR family transcriptional regulator 3738224..3739321 Roseobacter denitrificans OCh 114 4195440 YP_684016.1 CDS RD1_3868 NC_008209.1 3739372 3739926 D hypothetical protein 3739372..3739926 Roseobacter denitrificans OCh 114 4198757 YP_684017.1 CDS RD1_3869 NC_008209.1 3739968 3740999 R AraC family transcriptional regulator complement(3739968..3740999) Roseobacter denitrificans OCh 114 4198758 YP_684018.1 CDS RD1_3870 NC_008209.1 3741118 3742131 D hypothetical protein 3741118..3742131 Roseobacter denitrificans OCh 114 4198759 YP_684019.1 CDS RD1_3871 NC_008209.1 3742367 3743557 D monooxygenase 3742367..3743557 Roseobacter denitrificans OCh 114 4198760 YP_684020.1 CDS RD1_3872 NC_008209.1 3743696 3744436 R oxidoreductase complement(3743696..3744436) Roseobacter denitrificans OCh 114 4198761 YP_684021.1 CDS RD1_3873 NC_008209.1 3744433 3745281 R hypothetical protein complement(3744433..3745281) Roseobacter denitrificans OCh 114 4198762 YP_684022.1 CDS RD1_3874 NC_008209.1 3745442 3746485 D hypothetical protein 3745442..3746485 Roseobacter denitrificans OCh 114 4198763 YP_684023.1 CDS RD1_3876 NC_008209.1 3746496 3747632 D oxidoreductase 3746496..3747632 Roseobacter denitrificans OCh 114 4198764 YP_684024.1 CDS RD1_3877 NC_008209.1 3747583 3748293 D hypothetical protein 3747583..3748293 Roseobacter denitrificans OCh 114 4198765 YP_684025.1 CDS RD1_3878 NC_008209.1 3748315 3749259 R sugar kinase complement(3748315..3749259) Roseobacter denitrificans OCh 114 4198766 YP_684026.1 CDS RD1_3879 NC_008209.1 3749256 3749543 R hypothetical protein complement(3749256..3749543) Roseobacter denitrificans OCh 114 4198767 YP_684027.1 CDS RD1_3880 NC_008209.1 3749540 3750634 R sugar ABC transporter ATP-binding protein complement(3749540..3750634) Roseobacter denitrificans OCh 114 4198768 YP_684028.1 CDS RD1_3881 NC_008209.1 3750631 3751500 R sugar ABC transporter permease complement(3750631..3751500) Roseobacter denitrificans OCh 114 4198769 YP_684029.1 CDS y4oQ NC_008209.1 3751500 3752417 R ABC transporter permease complement(3751500..3752417) Roseobacter denitrificans OCh 114 4198770 YP_684030.1 CDS RD1_3883 NC_008209.1 3752490 3753950 R ABC transporter periplasmic substrate-binding protein complement(3752490..3753950) Roseobacter denitrificans OCh 114 4198771 YP_684031.1 CDS RD1_3884 NC_008209.1 3754016 3755137 R sugar ABC transporter ATP-binding protein complement(3754016..3755137) Roseobacter denitrificans OCh 114 4198772 YP_684032.1 CDS RD1_3886 NC_008209.1 3755165 3756223 R endonuclease complement(3755165..3756223) Roseobacter denitrificans OCh 114 4198773 YP_684033.1 CDS RD1_3887 NC_008209.1 3756253 3757275 R transcriptional regulator protein complement(3756253..3757275) Roseobacter denitrificans OCh 114 4198774 YP_684034.1 CDS RD1_3888 NC_008209.1 3757369 3757803 D hypothetical protein 3757369..3757803 Roseobacter denitrificans OCh 114 4198775 YP_684035.1 CDS RD1_3889 NC_008209.1 3757822 3759579 R in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase complement(3757822..3759579) Roseobacter denitrificans OCh 114 4198776 YP_684036.1 CDS RD1_3890 NC_008209.1 3759735 3760001 R hypothetical protein complement(3759735..3760001) Roseobacter denitrificans OCh 114 4198777 YP_684037.1 CDS RD1_3891 NC_008209.1 3759985 3760392 R helix-turn-helix domain-containing protein complement(3759985..3760392) Roseobacter denitrificans OCh 114 4198778 YP_684038.1 CDS aatA NC_008209.1 3760476 3761678 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 3760476..3761678 Roseobacter denitrificans OCh 114 4198779 YP_684039.1 CDS ychF NC_008209.1 3761790 3762887 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3761790..3762887) Roseobacter denitrificans OCh 114 4198780 YP_684040.1 CDS RD1_3894 NC_008209.1 3762954 3763271 R hypothetical protein complement(3762954..3763271) Roseobacter denitrificans OCh 114 4198781 YP_684041.1 CDS trpA NC_008209.1 3763301 3764092 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3763301..3764092 Roseobacter denitrificans OCh 114 4198782 YP_684042.1 CDS RD1_3896 NC_008209.1 3764341 3765510 D L-lactate dehydrogenase 3764341..3765510 Roseobacter denitrificans OCh 114 4198783 YP_684043.1 CDS RD1_3897 NC_008209.1 3765535 3766722 R integral membrane transport protein complement(3765535..3766722) Roseobacter denitrificans OCh 114 4198784 YP_684044.1 CDS RD1_3898 NC_008209.1 3766855 3767493 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 3766855..3767493 Roseobacter denitrificans OCh 114 4198785 YP_684045.1 CDS pth NC_008209.1 3767598 3768299 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3767598..3768299 Roseobacter denitrificans OCh 114 4198786 YP_684046.1 CDS RD1_3901 NC_008209.1 3768296 3769336 D hypothetical protein 3768296..3769336 Roseobacter denitrificans OCh 114 4198787 YP_684047.1 CDS nylB NC_008209.1 3769336 3770523 D 6-aminohexanoate-dimer hydrolase 3769336..3770523 Roseobacter denitrificans OCh 114 4198788 YP_684048.1 CDS RD1_3904 NC_008209.1 3770510 3770734 D hypothetical protein 3770510..3770734 Roseobacter denitrificans OCh 114 4198789 YP_684049.1 CDS RD1_3905 NC_008209.1 3770951 3771589 D hypothetical protein 3770951..3771589 Roseobacter denitrificans OCh 114 4198790 YP_684050.1 CDS trpB NC_008209.1 3771597 3772829 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3771597..3772829) Roseobacter denitrificans OCh 114 4198791 YP_684051.1 CDS trpF NC_008209.1 3773314 3773982 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(3773314..3773982) Roseobacter denitrificans OCh 114 4198792 YP_684052.1 CDS RD1_3908 NC_008209.1 3774023 3774373 R hypothetical protein complement(3774023..3774373) Roseobacter denitrificans OCh 114 4198793 YP_684053.1 CDS ihfB NC_008209.1 3774373 3774657 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(3774373..3774657) Roseobacter denitrificans OCh 114 4198794 YP_684054.1 CDS rpsA NC_008209.1 3775061 3776740 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3775061..3776740) Roseobacter denitrificans OCh 114 4198795 YP_684055.1 CDS RD1_3912 NC_008209.1 3777019 3777612 R hypothetical protein complement(3777019..3777612) Roseobacter denitrificans OCh 114 4195134 YP_684056.1 CDS cmk NC_008209.1 3777679 3778296 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(3777679..3778296) Roseobacter denitrificans OCh 114 4195135 YP_684057.1 CDS aroA NC_008209.1 3778304 3779656 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(3778304..3779656) Roseobacter denitrificans OCh 114 4195136 YP_684058.1 CDS trmB NC_008209.1 3779740 3780441 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3779740..3780441) Roseobacter denitrificans OCh 114 4195137 YP_684059.1 CDS metK NC_008209.1 3780556 3781737 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(3780556..3781737) Roseobacter denitrificans OCh 114 4195138 YP_684060.1 CDS cutE NC_008209.1 3781822 3783312 R apolipoprotein N-acyltransferase complement(3781822..3783312) Roseobacter denitrificans OCh 114 4195139 YP_684061.1 CDS RD1_3918 NC_008209.1 3783348 3784244 R hemolysin-like protein complement(3783348..3784244) Roseobacter denitrificans OCh 114 4195140 YP_684062.1 CDS RD1_3919 NC_008209.1 3784283 3784783 R hypothetical protein complement(3784283..3784783) Roseobacter denitrificans OCh 114 4195141 YP_684063.1 CDS phoH NC_008209.1 3784820 3785839 R phosphate starvation inducible protein complement(3784820..3785839) Roseobacter denitrificans OCh 114 4195142 YP_684064.1 CDS miaB NC_008209.1 3785952 3787277 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(3785952..3787277) Roseobacter denitrificans OCh 114 4195143 YP_684065.1 CDS RD1_3922 NC_008209.1 3787422 3787841 R FUR family transcriptional regulator complement(3787422..3787841) Roseobacter denitrificans OCh 114 4195144 YP_684066.2 CDS fabA NC_008209.1 3788036 3788545 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3788036..3788545 Roseobacter denitrificans OCh 114 4195145 YP_684067.1 CDS fabB NC_008209.1 3788577 3789806 D 3-oxoacyl-ACP synthase 3788577..3789806 Roseobacter denitrificans OCh 114 4195146 YP_684068.1 CDS fabI NC_008209.1 3789816 3790607 D enoyl-ACP reductase 3789816..3790607 Roseobacter denitrificans OCh 114 4195147 YP_684069.1 CDS RD1_3926 NC_008209.1 3790806 3790919 D hypothetical protein 3790806..3790919 Roseobacter denitrificans OCh 114 4195148 YP_684070.1 CDS RD1_3927 NC_008209.1 3790832 3791266 R hypothetical protein complement(3790832..3791266) Roseobacter denitrificans OCh 114 4195149 YP_684071.1 CDS slyD NC_008209.1 3791401 3791835 R FKBP-type peptidyl-prolyl cis-trans isomerase complement(3791401..3791835) Roseobacter denitrificans OCh 114 4195150 YP_684072.1 CDS deh NC_008209.1 3792019 3792705 D (S)-2-haloacid dehalogenase 3792019..3792705 Roseobacter denitrificans OCh 114 4195151 YP_684073.1 CDS RD1_3930 NC_008209.1 3792705 3793529 D hydrolase 3792705..3793529 Roseobacter denitrificans OCh 114 4195152 YP_684074.1 CDS RD1_3931 NC_008209.1 3793526 3794509 D threonine dehydratase 3793526..3794509 Roseobacter denitrificans OCh 114 4195966 YP_684075.1 CDS pcaD NC_008209.1 3794550 3795353 D 3-oxoadipate enol-lactonase 3794550..3795353 Roseobacter denitrificans OCh 114 4195967 YP_684076.1 CDS estC NC_008209.1 3795346 3796056 D esterase EstC 3795346..3796056 Roseobacter denitrificans OCh 114 4195968 YP_684077.1 CDS pcaB NC_008209.1 3796060 3797391 D 3-carboxy-cis,cis-muconate cycloisomerase 3796060..3797391 Roseobacter denitrificans OCh 114 4195969 YP_684078.1 CDS tetA NC_008209.1 3797388 3798593 D tetracycline resistance protein 3797388..3798593 Roseobacter denitrificans OCh 114 4195970 YP_684079.1 CDS RD1_3937 NC_008209.1 3798695 3799786 D dehydrogenase 3798695..3799786 Roseobacter denitrificans OCh 114 4195971 YP_684080.1 CDS RD1_3939 NC_008209.1 3799812 3801053 D racemase 3799812..3801053 Roseobacter denitrificans OCh 114 4195972 YP_684081.1 CDS RD1_3940 NC_008209.1 3801062 3801757 R hypothetical protein complement(3801062..3801757) Roseobacter denitrificans OCh 114 4195973 YP_684082.1 CDS metE NC_008209.1 3801757 3802881 R 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3801757..3802881) Roseobacter denitrificans OCh 114 4195974 YP_684083.1 CDS RD1_3942 NC_008209.1 3802927 3803901 R cupin domain-containing protein complement(3802927..3803901) Roseobacter denitrificans OCh 114 4195975 YP_684084.1 CDS RD1_3943 NC_008209.1 3803938 3804906 R hypothetical protein complement(3803938..3804906) Roseobacter denitrificans OCh 114 4195976 YP_684085.1 CDS RD1_3944 NC_008209.1 3804903 3805919 R LacI family transcriptional regulator complement(3804903..3805919) Roseobacter denitrificans OCh 114 4195977 YP_684086.1 CDS RD1_3945 NC_008209.1 3805936 3806697 R dehydrogenase complement(3805936..3806697) Roseobacter denitrificans OCh 114 4195978 YP_684087.1 CDS RD1_3946 NC_008209.1 3806694 3807743 R hypothetical protein complement(3806694..3807743) Roseobacter denitrificans OCh 114 4195979 YP_684088.1 CDS RD1_3947 NC_008209.1 3807757 3807894 R hypothetical protein complement(3807757..3807894) Roseobacter denitrificans OCh 114 4195980 YP_684089.1 CDS hisD NC_008209.1 3807901 3809229 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(3807901..3809229) Roseobacter denitrificans OCh 114 4195981 YP_684090.1 CDS RD1_3949 NC_008209.1 3809242 3809772 R hypothetical protein complement(3809242..3809772) Roseobacter denitrificans OCh 114 4195982 YP_684091.1 CDS RD1_3950 NC_008209.1 3809801 3810958 R sugar ABC transporter permease complement(3809801..3810958) Roseobacter denitrificans OCh 114 4195983 YP_684092.1 CDS RD1_3951 NC_008209.1 3810958 3811983 R sugar-ABC transporter permease complement(3810958..3811983) Roseobacter denitrificans OCh 114 4195984 YP_684093.1 CDS RD1_3953 NC_008209.1 3812108 3813328 R sugar ABC transporter substrate-binding domain complement(3812108..3813328) Roseobacter denitrificans OCh 114 4195985 YP_684094.1 CDS RD1_3954 NC_008209.1 3813413 3814468 R sugar ABC transporter ATP-binding protein complement(3813413..3814468) Roseobacter denitrificans OCh 114 4195770 YP_684095.1 CDS RD1_3955 NC_008209.1 3814551 3814670 D hypothetical protein 3814551..3814670 Roseobacter denitrificans OCh 114 4195771 YP_684096.1 CDS gcdH NC_008209.1 3814767 3815990 R glutaryl-CoA dehydrogenase complement(3814767..3815990) Roseobacter denitrificans OCh 114 4195772 YP_684097.1 CDS RD1_3957 NC_008209.1 3816098 3816985 D LysR family transcriptional regulator 3816098..3816985 Roseobacter denitrificans OCh 114 4195773 YP_684098.1 CDS RD1_3958 NC_008209.1 3817240 3817905 R hypothetical protein complement(3817240..3817905) Roseobacter denitrificans OCh 114 4195774 YP_684099.1 CDS RD1_3959 NC_008209.1 3818009 3819565 R 5'-nucleotidase complement(3818009..3819565) Roseobacter denitrificans OCh 114 4195775 YP_684100.1 CDS RD1_3960 NC_008209.1 3819690 3820040 D hypothetical protein 3819690..3820040 Roseobacter denitrificans OCh 114 4195776 YP_684101.1 CDS RD1_3961 NC_008209.1 3820037 3821089 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 3820037..3821089 Roseobacter denitrificans OCh 114 4195777 YP_684102.1 CDS dinF NC_008209.1 3821086 3822426 R DNA-damage-inducible protein complement(3821086..3822426) Roseobacter denitrificans OCh 114 4195778 YP_684103.1 CDS RD1_3963 NC_008209.1 3822416 3822934 R hypothetical protein complement(3822416..3822934) Roseobacter denitrificans OCh 114 4195779 YP_684104.1 CDS RD1_3964 NC_008209.1 3822931 3823353 R thioesterase family protein complement(3822931..3823353) Roseobacter denitrificans OCh 114 4195780 YP_684105.1 CDS RD1_3965 NC_008209.1 3823483 3823854 D transcriptional regulator 3823483..3823854 Roseobacter denitrificans OCh 114 4195781 YP_684106.1 CDS RD1_3966 NC_008209.1 3823851 3824096 R hypothetical protein complement(3823851..3824096) Roseobacter denitrificans OCh 114 4195782 YP_684107.1 CDS luxR NC_008209.1 3824172 3824918 R LuxR family transcriptional regulator complement(3824172..3824918) Roseobacter denitrificans OCh 114 4195783 YP_684108.1 CDS RD1_3968 NC_008209.1 3825126 3825539 D MerR family transcriptional regulator 3825126..3825539 Roseobacter denitrificans OCh 114 4195784 YP_684109.1 CDS RD1_3969 NC_008209.1 3825580 3827361 D acyl-CoA dehydrogenase 3825580..3827361 Roseobacter denitrificans OCh 114 4195785 YP_684110.1 CDS fadE NC_008209.1 3827487 3828635 D acyl-CoA dehydrogenase 3827487..3828635 Roseobacter denitrificans OCh 114 4195786 YP_684111.1 CDS gst NC_008209.1 3828677 3829315 D glutathione S-transferase 3828677..3829315 Roseobacter denitrificans OCh 114 4195787 YP_684112.1 CDS fadA NC_008209.1 3829356 3830567 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3829356..3830567 Roseobacter denitrificans OCh 114 4195788 YP_684113.1 CDS fadJ NC_008209.1 3830600 3832798 D fatty acid oxidation complex alpha subunit 3830600..3832798 Roseobacter denitrificans OCh 114 4195441 YP_684114.1 CDS RD1_3974 NC_008209.1 3833041 3834663 D AMP-binding protein 3833041..3834663 Roseobacter denitrificans OCh 114 4195442 YP_684115.1 CDS RD1_3975 NC_008209.1 3834717 3835784 D hypothetical protein 3834717..3835784 Roseobacter denitrificans OCh 114 4195443 YP_684116.1 CDS upp NC_008209.1 3835792 3836424 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3835792..3836424) Roseobacter denitrificans OCh 114 4195444 YP_684117.1 CDS deoB NC_008209.1 3836449 3837672 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(3836449..3837672) Roseobacter denitrificans OCh 114 4195445 YP_684118.1 CDS deoA NC_008209.1 3837672 3838982 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(3837672..3838982) Roseobacter denitrificans OCh 114 4195446 YP_684119.1 CDS cdd NC_008209.1 3838984 3839373 R cytidine deaminase complement(3838984..3839373) Roseobacter denitrificans OCh 114 4195447 YP_684120.1 CDS RD1_3981 NC_008209.1 3839452 3840543 R cupin domain-containing protein complement(3839452..3840543) Roseobacter denitrificans OCh 114 4195448 YP_684121.1 CDS RD1_3982 NC_008209.1 3840540 3841253 R hypothetical protein complement(3840540..3841253) Roseobacter denitrificans OCh 114 4195449 YP_684122.1 CDS RD1_3985 NC_008209.1 3843724 3844371 R hypothetical protein complement(3843724..3844371) Roseobacter denitrificans OCh 114 4195451 YP_684123.1 CDS prpE NC_008209.1 3844445 3846337 D propionate--CoA ligase 3844445..3846337 Roseobacter denitrificans OCh 114 4195452 YP_684124.1 CDS csbD NC_008209.1 3846508 3846717 R stress response protein CsbD complement(3846508..3846717) Roseobacter denitrificans OCh 114 4195453 YP_684125.1 CDS RD1_3988 NC_008209.1 3846932 3848140 R coenzyme F420 hydrogenase, beta subunit complement(3846932..3848140) Roseobacter denitrificans OCh 114 4195454 YP_684126.1 CDS ppnK NC_008209.1 3848140 3848901 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(3848140..3848901) Roseobacter denitrificans OCh 114 4195455 YP_684127.1 CDS glyA NC_008209.1 3849125 3850420 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3849125..3850420 Roseobacter denitrificans OCh 114 4195456 YP_684128.1 CDS dctM NC_008209.1 3850464 3851747 R TRAP dicarboxylate transporter subunit DctM complement(3850464..3851747) Roseobacter denitrificans OCh 114 4195457 YP_684129.1 CDS RD1_3993 NC_008209.1 3851757 3852284 R C4-dicarboxylate ABC transporter permease complement(3851757..3852284) Roseobacter denitrificans OCh 114 4195458 YP_684130.1 CDS dctP NC_008209.1 3852362 3853342 R TRAP dicarboxylate ABC transporter substrate-binding protein complement(3852362..3853342) Roseobacter denitrificans OCh 114 4195459 YP_684131.1 CDS kdgF NC_008209.1 3853616 3853927 R pectin degradation protein complement(3853616..3853927) Roseobacter denitrificans OCh 114 4195460 YP_684132.1 CDS RD1_3996 NC_008209.1 3853948 3854691 R oxidoreductase complement(3853948..3854691) Roseobacter denitrificans OCh 114 4195986 YP_684133.1 CDS RD1_3997 NC_008209.1 3854873 3855559 D GntR family transcriptional regulator 3854873..3855559 Roseobacter denitrificans OCh 114 4195987 YP_684134.1 CDS frpC NC_008209.1 3855818 3857464 D iron-regulated protein frpC 3855818..3857464 Roseobacter denitrificans OCh 114 4195988 YP_684135.1 CDS RD1_3999 NC_008209.1 3857703 3858239 D RNA polymerase ECF-type sigma factor 3857703..3858239 Roseobacter denitrificans OCh 114 4195989 YP_684136.1 CDS RD1_4000 NC_008209.1 3858277 3858843 R hypothetical protein complement(3858277..3858843) Roseobacter denitrificans OCh 114 4195990 YP_684137.1 CDS apr NC_008209.1 3859192 3860187 D subtilisin carlsberg 3859192..3860187 Roseobacter denitrificans OCh 114 4195991 YP_684138.1 CDS znuA NC_008209.1 3860198 3861295 R zinc ABC transporter periplasmic zinc-binding protein complement(3860198..3861295) Roseobacter denitrificans OCh 114 4195992 YP_684139.1 CDS zur NC_008209.1 3861289 3861804 D zinc uptake regulation protein 3861289..3861804 Roseobacter denitrificans OCh 114 4195993 YP_684140.1 CDS znuC NC_008209.1 3861801 3862568 D zinc ABC transporter ATP-binding protein 3861801..3862568 Roseobacter denitrificans OCh 114 4195994 YP_684141.1 CDS znuB NC_008209.1 3862568 3863362 D zinc ABC transporter permease 3862568..3863362 Roseobacter denitrificans OCh 114 4195995 YP_684142.1 CDS RD1_4008 NC_008209.1 3863570 3864370 D hypothetical protein 3863570..3864370 Roseobacter denitrificans OCh 114 4195996 YP_684143.1 CDS RD1_4009 NC_008209.1 3864490 3865224 D proteasome-type protease 3864490..3865224 Roseobacter denitrificans OCh 114 4195997 YP_684144.1 CDS RD1_4011 NC_008209.1 3865451 3866026 R hypothetical protein complement(3865451..3866026) Roseobacter denitrificans OCh 114 4195999 YP_684145.1 CDS tuf NC_008209.1 3866170 3867345 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3866170..3867345) Roseobacter denitrificans OCh 114 4196000 YP_684146.1 CDS fusA NC_008209.1 3867423 3869540 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3867423..3869540) Roseobacter denitrificans OCh 114 4196001 YP_684147.1 CDS rpsG NC_008209.1 3869606 3870076 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3869606..3870076) Roseobacter denitrificans OCh 114 4196002 YP_684148.1 CDS rpsL NC_008209.1 3870089 3870460 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3870089..3870460) Roseobacter denitrificans OCh 114 4196003 YP_684149.1 CDS RD1_4016 NC_008209.1 3870822 3871691 R hypothetical protein complement(3870822..3871691) Roseobacter denitrificans OCh 114 4195401 YP_684150.1 CDS RD1_4017 NC_008209.1 3871835 3871927 D hypothetical protein 3871835..3871927 Roseobacter denitrificans OCh 114 4195402 YP_684151.1 CDS rpoC NC_008209.1 3871950 3876194 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3871950..3876194) Roseobacter denitrificans OCh 114 4195403 YP_684152.1 CDS rpoB NC_008209.1 3876495 3880631 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3876495..3880631) Roseobacter denitrificans OCh 114 4195404 YP_684153.1 CDS rplL NC_008209.1 3880888 3881259 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3880888..3881259) Roseobacter denitrificans OCh 114 4195405 YP_684154.1 CDS rplJ NC_008209.1 3881334 3881849 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3881334..3881849) Roseobacter denitrificans OCh 114 4195406 YP_684155.1 CDS rplA NC_008209.1 3882089 3882787 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3882089..3882787) Roseobacter denitrificans OCh 114 4195407 YP_684156.1 CDS rplK NC_008209.1 3882789 3883214 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3882789..3883214) Roseobacter denitrificans OCh 114 4195408 YP_684157.1 CDS nusG NC_008209.1 3883318 3883893 R transcription antitermination protein NusG complement(3883318..3883893) Roseobacter denitrificans OCh 114 4195409 YP_684158.1 CDS secE NC_008209.1 3884057 3884254 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3884057..3884254) Roseobacter denitrificans OCh 114 4195410 YP_684159.1 CDS RD1_4026 NC_008209.1 3884199 3884291 D hypothetical protein 3884199..3884291 Roseobacter denitrificans OCh 114 4195411 YP_684160.1 CDS RD1_4027 NC_008209.1 3884927 3887284 R hypothetical protein complement(3884927..3887284) Roseobacter denitrificans OCh 114 4195412 YP_684161.1 CDS RD1_4028 NC_008209.1 3887541 3887636 D hypothetical protein 3887541..3887636 Roseobacter denitrificans OCh 114 4195413 YP_684162.1 CDS RD1_4029 NC_008209.1 3887586 3888536 R hypothetical protein complement(3887586..3888536) Roseobacter denitrificans OCh 114 4195414 YP_684163.1 CDS RD1_4030 NC_008209.1 3888545 3890200 R Fe-ABC transporter permease complement(3888545..3890200) Roseobacter denitrificans OCh 114 4195415 YP_684164.1 CDS RD1_4031 NC_008209.1 3890197 3891279 R ABC transporter ATP-binding protein complement(3890197..3891279) Roseobacter denitrificans OCh 114 4195416 YP_684165.1 CDS RD1_4033 NC_008209.1 3891339 3892322 R iron ABC transporter substrate-binding protein complement(3891339..3892322) Roseobacter denitrificans OCh 114 4195417 YP_684166.1 CDS RD1_4034 NC_008209.1 3892916 3893842 R type I secretion protein complement(3892916..3893842) Roseobacter denitrificans OCh 114 4195418 YP_684167.1 CDS RD1_4036 NC_008209.1 3894117 3894725 R hypothetical protein complement(3894117..3894725) Roseobacter denitrificans OCh 114 4195419 YP_684168.1 CDS rpoE3 NC_008209.1 3894856 3895332 D ECF subfamily RNA polymerase sigma factor 3894856..3895332 Roseobacter denitrificans OCh 114 4195420 YP_684169.1 CDS RD1_4038 NC_008209.1 3895329 3896093 D hypothetical protein 3895329..3896093 Roseobacter denitrificans OCh 114 4198910 YP_684170.1 CDS RD1_4039 NC_008209.1 3896759 3898600 R hypothetical protein complement(3896759..3898600) Roseobacter denitrificans OCh 114 4198911 YP_684171.1 CDS RD1_4040 NC_008209.1 3898626 3898961 R transposition protein complement(3898626..3898961) Roseobacter denitrificans OCh 114 4198912 YP_684172.1 CDS RD1_4041 NC_008209.1 3899046 3899468 R transposition protein complement(3899046..3899468) Roseobacter denitrificans OCh 114 4198913 YP_684173.1 CDS RD1_4042 NC_008209.1 3899577 3901361 R transposase complement(3899577..3901361) Roseobacter denitrificans OCh 114 4198914 YP_684174.1 CDS RD1_4043 NC_008209.1 3901762 3902439 R hypothetical protein complement(3901762..3902439) Roseobacter denitrificans OCh 114 4198915 YP_684175.1 CDS RD1_4044 NC_008209.1 3902841 3903158 D hypothetical protein 3902841..3903158 Roseobacter denitrificans OCh 114 4198916 YP_684176.1 CDS RD1_4045 NC_008209.1 3904066 3904254 D hypothetical protein 3904066..3904254 Roseobacter denitrificans OCh 114 4198917 YP_684177.1 CDS RD1_4046 NC_008209.1 3905208 3906758 R hypothetical protein complement(3905208..3906758) Roseobacter denitrificans OCh 114 4198918 YP_684178.1 CDS RD1_4047 NC_008209.1 3906758 3907726 R transposition protein complement(3906758..3907726) Roseobacter denitrificans OCh 114 4198919 YP_684179.1 CDS RD1_4048 NC_008209.1 3907729 3909936 R transposase complement(3907729..3909936) Roseobacter denitrificans OCh 114 4198920 YP_684180.1 CDS RD1_4050 NC_008209.1 3910030 3910191 R hypothetical protein complement(3910030..3910191) Roseobacter denitrificans OCh 114 4198921 YP_684181.1 CDS RD1_4051 NC_008209.1 3910318 3911124 R hypothetical protein complement(3910318..3911124) Roseobacter denitrificans OCh 114 4198922 YP_684182.1 CDS RD1_4052 NC_008209.1 3911106 3911207 D hypothetical protein 3911106..3911207 Roseobacter denitrificans OCh 114 4198923 YP_684183.1 CDS hsdM NC_008209.1 3912658 3914691 D type I restriction-modification system DNA methylase 3912658..3914691 Roseobacter denitrificans OCh 114 4198924 YP_684184.1 CDS RD1_4054 NC_008209.1 3914688 3915932 D type I restriction-mod 3914688..3915932 Roseobacter denitrificans OCh 114 4198925 YP_684185.1 CDS hsdR NC_008209.1 3915929 3919132 D type I restriction-modification system endonuclease 3915929..3919132 Roseobacter denitrificans OCh 114 4198926 YP_684186.1 CDS RD1_4056 NC_008209.1 3919394 3919495 D hypothetical protein 3919394..3919495 Roseobacter denitrificans OCh 114 4198927 YP_684187.1 CDS RD1_4057 NC_008209.1 3919942 3920343 R hypothetical protein complement(3919942..3920343) Roseobacter denitrificans OCh 114 4198928 YP_684188.1 CDS RD1_4058 NC_008209.1 3920355 3921455 R hypothetical protein complement(3920355..3921455) Roseobacter denitrificans OCh 114 4195323 YP_684189.1 CDS lon NC_008209.1 3922652 3923752 R Lon protease complement(3922652..3923752) Roseobacter denitrificans OCh 114 4195324 YP_684190.1 CDS RD1_4060 NC_008209.1 3923730 3923822 D hypothetical protein 3923730..3923822 Roseobacter denitrificans OCh 114 4195325 YP_684191.1 CDS RD1_4061 NC_008209.1 3924082 3926580 R ribonucleotide reductase complement(3924082..3926580) Roseobacter denitrificans OCh 114 4195326 YP_684192.1 CDS RD1_4062 NC_008209.1 3926866 3927285 D hypothetical protein 3926866..3927285 Roseobacter denitrificans OCh 114 4195327 YP_684193.1 CDS hisG NC_008209.1 3927292 3927984 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase complement(3927292..3927984) Roseobacter denitrificans OCh 114 4195328 YP_684194.1 CDS hisZ NC_008209.1 3927981 3929063 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase complement(3927981..3929063) Roseobacter denitrificans OCh 114 4195329 YP_684195.1 CDS hisS NC_008209.1 3929060 3930619 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3929060..3930619) Roseobacter denitrificans OCh 114 4195330 YP_684196.1 CDS RD1_4066 NC_008209.1 3930734 3930928 D hypothetical protein 3930734..3930928 Roseobacter denitrificans OCh 114 4195331 YP_684197.1 CDS dnaE NC_008209.1 3930970 3934521 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3930970..3934521) Roseobacter denitrificans OCh 114 4195332 YP_684198.1 CDS xdhA NC_008209.1 3934745 3936118 D xanthine dehydrogenase, A subunit 3934745..3936118 Roseobacter denitrificans OCh 114 4195333 YP_684199.1 CDS xdhB NC_008209.1 3936115 3938412 D xanthine dehydrogenase subunit B 3936115..3938412 Roseobacter denitrificans OCh 114 4195334 YP_684200.1 CDS xdhC NC_008209.1 3938412 3939344 D xanthine dehydrogenase accessory factor 3938412..3939344 Roseobacter denitrificans OCh 114 4195335 YP_684201.1 CDS RD1_4071 NC_008209.1 3939341 3940855 D sugar ABC transporter ATP-binding protein 3939341..3940855 Roseobacter denitrificans OCh 114 4195336 YP_684202.1 CDS RD1_4072 NC_008209.1 3940897 3941979 D sugar ABC transporter permease 3940897..3941979 Roseobacter denitrificans OCh 114 4195337 YP_684203.1 CDS RD1_4073 NC_008209.1 3941979 3942899 D sugar ABC transporter permease 3941979..3942899 Roseobacter denitrificans OCh 114 4195338 YP_684204.1 CDS RD1_4074 NC_008209.1 3942953 3944029 D basic membrane protein 3942953..3944029 Roseobacter denitrificans OCh 114 4195339 YP_684205.1 CDS RD1_4075 NC_008209.1 3944038 3944145 D hypothetical protein 3944038..3944145 Roseobacter denitrificans OCh 114 4195340 YP_684206.1 CDS RD1_4076 NC_008209.1 3944210 3944620 D universal stress family protein 3944210..3944620 Roseobacter denitrificans OCh 114 4195341 YP_684207.1 CDS gsh NC_008209.1 3944975 3946345 R glutamate-cysteine ligase complement(3944975..3946345) Roseobacter denitrificans OCh 114 4195342 YP_684208.1 CDS RD1_4078 NC_008209.1 3946411 3946932 R hypothetical protein complement(3946411..3946932) Roseobacter denitrificans OCh 114 4198814 YP_684209.1 CDS RD1_4079 NC_008209.1 3947062 3947685 D hypothetical protein 3947062..3947685 Roseobacter denitrificans OCh 114 4198815 YP_684210.1 CDS ubiA NC_008209.1 3947707 3948669 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 3947707..3948669 Roseobacter denitrificans OCh 114 4198816 YP_684211.1 CDS RD1_4081 NC_008209.1 3948730 3950607 D OmpA domain-containing protein 3948730..3950607 Roseobacter denitrificans OCh 114 4198817 YP_684212.1 CDS RD1_4082 NC_008209.1 3950642 3950971 D hypothetical protein 3950642..3950971 Roseobacter denitrificans OCh 114 4198818 YP_684213.1 CDS RD1_4083 NC_008209.1 3950984 3951433 R universal stress family protein complement(3950984..3951433) Roseobacter denitrificans OCh 114 4198819 YP_684214.1 CDS moaE NC_008209.1 3951523 3951966 R molybdopterin converting factor subunit 2 complement(3951523..3951966) Roseobacter denitrificans OCh 114 4198820 YP_684215.1 CDS moaD NC_008209.1 3951970 3952215 R molybdopterin converting factor subunit 1 complement(3951970..3952215) Roseobacter denitrificans OCh 114 4198821 YP_684216.1 CDS pgsA NC_008209.1 3952212 3952880 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3952212..3952880) Roseobacter denitrificans OCh 114 4198822 YP_684217.1 CDS RD1_4089 NC_008209.1 3955150 3955929 R short chain dehydrogenase complement(3955150..3955929) Roseobacter denitrificans OCh 114 4198824 YP_684218.1 CDS RD1_4090 NC_008209.1 3955952 3956899 R sodium/calcium exchanger protein complement(3955952..3956899) Roseobacter denitrificans OCh 114 4198825 YP_684219.1 CDS RD1_4091 NC_008209.1 3957074 3957871 R S49 family peptidase complement(3957074..3957871) Roseobacter denitrificans OCh 114 4198826 YP_684220.1 CDS RD1_4092 NC_008209.1 3957940 3958701 R ABC transporter permease complement(3957940..3958701) Roseobacter denitrificans OCh 114 4198827 YP_684221.1 CDS RD1_4093 NC_008209.1 3958698 3959636 R ABC transporter ATP-binding protein complement(3958698..3959636) Roseobacter denitrificans OCh 114 4198828 YP_684222.1 CDS RD1_4094 NC_008209.1 3959788 3960765 D hypothetical protein 3959788..3960765 Roseobacter denitrificans OCh 114 4198829 YP_684223.1 CDS RD1_4095 NC_008209.1 3960752 3961114 R hypothetical protein complement(3960752..3961114) Roseobacter denitrificans OCh 114 4198830 YP_684224.1 CDS RD1_4096 NC_008209.1 3961125 3962087 R oxidoreductase complement(3961125..3962087) Roseobacter denitrificans OCh 114 4198831 YP_684225.1 CDS RD1_4097 NC_008209.1 3962239 3962922 D hypothetical protein 3962239..3962922 Roseobacter denitrificans OCh 114 4198832 YP_684226.1 CDS RD1_4098 NC_008209.1 3962978 3966190 R oxidoreductase complement(3962978..3966190) Roseobacter denitrificans OCh 114 4196151 YP_684227.1 CDS RD1_4099 NC_008209.1 3966316 3967911 R GMC family oxidoreductase complement(3966316..3967911) Roseobacter denitrificans OCh 114 4196152 YP_684228.1 CDS RD1_4100 NC_008209.1 3968020 3969252 D TRAP dicarboxylate transporter subunit DctP 3968020..3969252 Roseobacter denitrificans OCh 114 4196153 YP_684229.1 CDS RD1_4101 NC_008209.1 3969369 3970037 D TRAP dicarboxylate transporter DctQ subunit 3969369..3970037 Roseobacter denitrificans OCh 114 4196154 YP_684230.1 CDS RD1_4102 NC_008209.1 3970037 3971398 D TRAP dicarboxylate transporter subunit DctM 3970037..3971398 Roseobacter denitrificans OCh 114 4196155 YP_684231.1 CDS iclR NC_008209.1 3971416 3972195 D acetate operon repressor 3971416..3972195 Roseobacter denitrificans OCh 114 4196156 YP_684232.1 CDS RD1_4104 NC_008209.1 3972246 3973043 R transglutaminase-like superfamily protein complement(3972246..3973043) Roseobacter denitrificans OCh 114 4196157 YP_684233.1 CDS RD1_4105 NC_008209.1 3973043 3973984 R hypothetical protein complement(3973043..3973984) Roseobacter denitrificans OCh 114 4196158 YP_684234.1 CDS RD1_4106 NC_008209.1 3973986 3975431 R hypothetical protein complement(3973986..3975431) Roseobacter denitrificans OCh 114 4196159 YP_684235.1 CDS RD1_4107 NC_008209.1 3975543 3976013 R hypothetical protein complement(3975543..3976013) Roseobacter denitrificans OCh 114 4196160 YP_684236.1 CDS RD1_4108 NC_008209.1 3976111 3976557 R hypothetical protein complement(3976111..3976557) Roseobacter denitrificans OCh 114 4196161 YP_684237.1 CDS RD1_4109 NC_008209.1 3976677 3977105 R universal stress family protein complement(3976677..3977105) Roseobacter denitrificans OCh 114 4196162 YP_684238.1 CDS RD1_4110 NC_008209.1 3977102 3979702 R TRAP transporter 4TM/12TM fusion protein complement(3977102..3979702) Roseobacter denitrificans OCh 114 4196163 YP_684239.1 CDS RD1_4111 NC_008209.1 3979798 3980766 R hypothetical protein complement(3979798..3980766) Roseobacter denitrificans OCh 114 4196164 YP_684240.1 CDS RD1_4112 NC_008209.1 3981204 3983594 D sarcosine dehydrogenase 3981204..3983594 Roseobacter denitrificans OCh 114 4196165 YP_684241.1 CDS RD1_4113 NC_008209.1 3983698 3985038 D hypothetical protein 3983698..3985038 Roseobacter denitrificans OCh 114 4196166 YP_684242.1 CDS RD1_4114 NC_008209.1 3985056 3986195 R BlaR1 peptidase M56 domain-containing protein complement(3985056..3986195) Roseobacter denitrificans OCh 114 4196167 YP_684243.1 CDS RD1_4115 NC_008209.1 3986179 3986577 R transcriptional regulator complement(3986179..3986577) Roseobacter denitrificans OCh 114 4196168 YP_684244.1 CDS RD1_4116 NC_008209.1 3986658 3987056 R hypothetical protein complement(3986658..3987056) Roseobacter denitrificans OCh 114 4196169 YP_684245.1 CDS RD1_4117 NC_008209.1 3987056 3987853 R sugar ABC transporter permease complement(3987056..3987853) Roseobacter denitrificans OCh 114 4196170 YP_684246.1 CDS RD1_4118 NC_008209.1 3987850 3988713 R sugar ABC transporter permease complement(3987850..3988713) Roseobacter denitrificans OCh 114 4196004 YP_684247.1 CDS RD1_4119 NC_008209.1 3988710 3989783 R sugar ABC transporter ATP-binding protein complement(3988710..3989783) Roseobacter denitrificans OCh 114 4196005 YP_684248.1 CDS ugpC NC_008209.1 3989783 3990847 R sn-glycerol-3-phosphate ABC transporter ATP-binding protein complement(3989783..3990847) Roseobacter denitrificans OCh 114 4196006 YP_684249.1 CDS RD1_4122 NC_008209.1 3990945 3992678 R sugar ABC transporter periplasmic sugar-binding protein complement(3990945..3992678) Roseobacter denitrificans OCh 114 4196007 YP_684250.1 CDS RD1_4123 NC_008209.1 3992779 3992925 R hypothetical protein complement(3992779..3992925) Roseobacter denitrificans OCh 114 4196008 YP_684251.1 CDS RD1_4124 NC_008209.1 3993146 3993241 D hypothetical protein 3993146..3993241 Roseobacter denitrificans OCh 114 4196009 YP_684252.1 CDS RD1_4125 NC_008209.1 3993369 3997274 D VBCS repeat-containing protein 3993369..3997274 Roseobacter denitrificans OCh 114 4196010 YP_684253.1 CDS RD1_4127 NC_008209.1 3997286 3997435 D hypothetical protein 3997286..3997435 Roseobacter denitrificans OCh 114 4196011 YP_684254.1 CDS potD NC_008209.1 3997419 3998447 R spermidine/putrescine ABC transporter substrate-binding protein complement(3997419..3998447) Roseobacter denitrificans OCh 114 4196012 YP_684255.1 CDS RD1_4129 NC_008209.1 3998476 3998592 D hypothetical protein 3998476..3998592 Roseobacter denitrificans OCh 114 4196013 YP_684256.1 CDS RD1_4130 NC_008209.1 3998494 3998679 R hypothetical protein complement(3998494..3998679) Roseobacter denitrificans OCh 114 4196014 YP_684257.1 CDS RD1_4131 NC_008209.1 3998798 3999889 D polyamine ABC transporter ATP-binding component 3998798..3999889 Roseobacter denitrificans OCh 114 4196015 YP_684258.1 CDS potB NC_008209.1 3999889 4000815 D spermidine/putrescine ABC transporter permease 3999889..4000815 Roseobacter denitrificans OCh 114 4196016 YP_684259.1 CDS potI NC_008209.1 4000819 4001628 D putrescine transport system, permease 4000819..4001628 Roseobacter denitrificans OCh 114 4196017 YP_684260.1 CDS RD1_4134 NC_008209.1 4001646 4002680 D spermidine/putrescine ABC transporter substrate-binding protein 4001646..4002680 Roseobacter denitrificans OCh 114 4196018 YP_684261.1 CDS aphA NC_008209.1 4002747 4003784 D acetylpolyamine aminohydrolase 4002747..4003784 Roseobacter denitrificans OCh 114 4196019 YP_684262.1 CDS RD1_4136 NC_008209.1 4003830 4005125 R monooxygenase complement(4003830..4005125) Roseobacter denitrificans OCh 114 4196020 YP_684263.1 CDS RD1_4137 NC_008209.1 4005284 4005400 D hypothetical protein 4005284..4005400 Roseobacter denitrificans OCh 114 4196021 YP_684264.1 CDS RD1_4138 NC_008209.1 4005403 4005819 D endoribonuclease L-PSP family protein 4005403..4005819 Roseobacter denitrificans OCh 114 4196022 YP_684265.1 CDS RD1_4139 NC_008209.1 4005816 4006490 D hypothetical protein 4005816..4006490 Roseobacter denitrificans OCh 114 4195867 YP_684266.1 CDS RD1_4140 NC_008209.1 4006689 4007624 D LysR family transcriptional regulator 4006689..4007624 Roseobacter denitrificans OCh 114 4195868 YP_684267.1 CDS tmd NC_008209.1 4007731 4009137 D trimethylamine dehydrogenase 4007731..4009137 Roseobacter denitrificans OCh 114 4195869 YP_684268.1 CDS tmd NC_008209.1 4009218 4009799 D trimethylamine dehydrogenase 4009218..4009799 Roseobacter denitrificans OCh 114 4195870 YP_684269.1 CDS argE NC_008209.1 4009812 4010960 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 4009812..4010960 Roseobacter denitrificans OCh 114 4195871 YP_684270.1 CDS RD1_4144 NC_008209.1 4011028 4013430 R hypothetical protein complement(4011028..4013430) Roseobacter denitrificans OCh 114 4195872 YP_684271.1 CDS nuo NC_008209.1 4013452 4015011 R NADH-ubiquinone/plastoquinone (complex I) oxidoreductase complement(4013452..4015011) Roseobacter denitrificans OCh 114 4195873 YP_684272.1 CDS RD1_4146 NC_008209.1 4015120 4015998 D LysR family transcriptional regulator 4015120..4015998 Roseobacter denitrificans OCh 114 4195874 YP_684273.1 CDS ampD NC_008209.1 4016067 4017125 R N-acetyl-anhydromuramyl-L-alanine amidase complement(4016067..4017125) Roseobacter denitrificans OCh 114 4195875 YP_684274.1 CDS RD1_4148 NC_008209.1 4017247 4018479 R hypothetical protein complement(4017247..4018479) Roseobacter denitrificans OCh 114 4195876 YP_684275.1 CDS RD1_4149 NC_008209.1 4018580 4019509 D LysR family transcriptional regulator 4018580..4019509 Roseobacter denitrificans OCh 114 4195877 YP_684276.1 CDS RD1_4150 NC_008209.1 4019564 4019917 R hypothetical protein complement(4019564..4019917) Roseobacter denitrificans OCh 114 4195878 YP_684277.1 CDS RD1_4151 NC_008209.1 4020059 4021477 D hypothetical protein 4020059..4021477 Roseobacter denitrificans OCh 114 4195879 YP_684278.1 CDS allA NC_008209.1 4021474 4021965 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4021474..4021965 Roseobacter denitrificans OCh 114 4195880 YP_684279.1 CDS RD1_4153 NC_008209.1 4022011 4023429 D xanthine/uracil permease 4022011..4023429 Roseobacter denitrificans OCh 114 4195881 YP_684280.1 CDS RD1_4154 NC_008209.1 4023866 4024699 R hypothetical protein complement(4023866..4024699) Roseobacter denitrificans OCh 114 4195882 YP_684281.1 CDS RD1_4155 NC_008209.1 4024944 4025171 R hypothetical protein complement(4024944..4025171) Roseobacter denitrificans OCh 114 4195883 YP_684282.1 CDS RD1_4156 NC_008209.1 4025178 4025603 R hypothetical protein complement(4025178..4025603) Roseobacter denitrificans OCh 114 4195884 YP_684283.1 CDS RD1_4157 NC_008209.1 4025708 4026301 D TetR family transcriptional regulator 4025708..4026301 Roseobacter denitrificans OCh 114 4195885 YP_684284.1 CDS RD1_4158 NC_008209.1 4026554 4027498 R hypothetical protein complement(4026554..4027498) Roseobacter denitrificans OCh 114 4195886 YP_684285.1 CDS fabG NC_008209.1 4027512 4028321 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(4027512..4028321) Roseobacter denitrificans OCh 114 4195694 YP_684286.1 CDS RD1_4160 NC_008209.1 4028895 4029890 R Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase complement(4028895..4029890) Roseobacter denitrificans OCh 114 4195695 YP_684287.1 CDS RD1_4161 NC_008209.1 4030442 4031038 R hypothetical protein complement(4030442..4031038) Roseobacter denitrificans OCh 114 4195696 YP_684288.1 CDS RD1_4162 NC_008209.1 4031598 4032080 R acetyltransferase complement(4031598..4032080) Roseobacter denitrificans OCh 114 4195697 YP_684289.1 CDS cysG NC_008209.1 4032729 4034126 R siroheme synthase complement(4032729..4034126) Roseobacter denitrificans OCh 114 4195698 YP_684290.1 CDS RD1_4165 NC_008209.1 4034123 4034416 R hypothetical protein complement(4034123..4034416) Roseobacter denitrificans OCh 114 4195699 YP_684291.1 CDS nasA NC_008209.1 4034413 4036989 R nitrate reductase complement(4034413..4036989) Roseobacter denitrificans OCh 114 4195700 YP_684292.1 CDS nirD NC_008209.1 4036986 4037321 R assimilatory nitrite reductase, small subunit complement(4036986..4037321) Roseobacter denitrificans OCh 114 4195701 YP_684293.1 CDS nirB NC_008209.1 4037318 4039744 R assimilatory nitrite reductase, large subunit complement(4037318..4039744) Roseobacter denitrificans OCh 114 4195702 YP_684294.1 CDS nasD NC_008209.1 4039750 4041408 R nitrate ABC transporter protein, ATP binding component complement(4039750..4041408) Roseobacter denitrificans OCh 114 4195703 YP_684295.1 CDS nasE NC_008209.1 4041414 4042487 R nitrate ABC transporter permease complement(4041414..4042487) Roseobacter denitrificans OCh 114 4195704 YP_684296.1 CDS nasF NC_008209.1 4042564 4043934 R nitrate transporter substrate-binding complement(4042564..4043934) Roseobacter denitrificans OCh 114 4195705 YP_684297.1 CDS nasS NC_008209.1 4044192 4045325 R nitrate transport ATP-binding protein complement(4044192..4045325) Roseobacter denitrificans OCh 114 4195706 YP_684298.1 CDS nasT NC_008209.1 4045322 4045906 R response regulator NasT complement(4045322..4045906) Roseobacter denitrificans OCh 114 4195707 YP_684299.1 CDS RD1_4175 NC_008209.1 4046303 4046794 R hypothetical protein complement(4046303..4046794) Roseobacter denitrificans OCh 114 4195708 YP_684300.1 CDS RD1_4176 NC_008209.1 4046852 4047367 R hypothetical protein complement(4046852..4047367) Roseobacter denitrificans OCh 114 4195709 YP_684301.1 CDS RD1_4177 NC_008209.1 4047436 4048050 R hypothetical protein complement(4047436..4048050) Roseobacter denitrificans OCh 114 4195710 YP_684302.1 CDS RD1_4178 NC_008209.1 4048119 4048571 R hypothetical protein complement(4048119..4048571) Roseobacter denitrificans OCh 114 4195711 YP_684303.1 CDS RD1_4179 NC_008209.1 4048568 4049251 R hypothetical protein complement(4048568..4049251) Roseobacter denitrificans OCh 114 4195712 YP_684304.1 CDS RD1_4180 NC_008209.1 4049271 4049936 R methyltransferase complement(4049271..4049936) Roseobacter denitrificans OCh 114 4195674 YP_684305.1 CDS RD1_4181 NC_008209.1 4050040 4050954 D LysR family transcriptional regulator 4050040..4050954 Roseobacter denitrificans OCh 114 4195675 YP_684306.1 CDS RD1_4182 NC_008209.1 4051021 4051131 R hypothetical protein complement(4051021..4051131) Roseobacter denitrificans OCh 114 4195676 YP_684307.1 CDS RD1_4183 NC_008209.1 4051105 4051521 D hypothetical protein 4051105..4051521 Roseobacter denitrificans OCh 114 4195677 YP_684308.1 CDS RD1_4184 NC_008209.1 4051518 4051982 D hypothetical protein 4051518..4051982 Roseobacter denitrificans OCh 114 4195678 YP_684309.1 CDS RD1_4185 NC_008209.1 4051942 4052400 D hypothetical protein 4051942..4052400 Roseobacter denitrificans OCh 114 4195679 YP_684310.1 CDS RD1_4186 NC_008209.1 4052718 4054634 D sodium/solute symporter 4052718..4054634 Roseobacter denitrificans OCh 114 4195680 YP_684311.1 CDS RD1_4187 NC_008209.1 4054621 4054788 D hypothetical protein 4054621..4054788 Roseobacter denitrificans OCh 114 4195681 YP_684312.1 CDS hmuS NC_008209.1 4055047 4056102 D hemin transport protein 4055047..4056102 Roseobacter denitrificans OCh 114 4195682 YP_684313.1 CDS hmuT NC_008209.1 4056099 4056959 D hemin ABC transporter periplasmic hemin-binding protein 4056099..4056959 Roseobacter denitrificans OCh 114 4195683 YP_684314.1 CDS RD1_4190 NC_008209.1 4056880 4058031 D hemin ABC transporter permease 4056880..4058031 Roseobacter denitrificans OCh 114 4195684 YP_684315.1 CDS hmuV NC_008209.1 4058033 4058818 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4058033..4058818 Roseobacter denitrificans OCh 114 4195685 YP_684316.1 CDS RD1_4192 NC_008209.1 4059065 4059376 D hypothetical protein 4059065..4059376 Roseobacter denitrificans OCh 114 4195686 YP_684317.1 CDS hugA NC_008209.1 4059564 4061681 D heme transport protein 4059564..4061681 Roseobacter denitrificans OCh 114 4195687 YP_684318.1 CDS pepN NC_008209.1 4061785 4063710 D aminopeptidase 4061785..4063710 Roseobacter denitrificans OCh 114 4195688 YP_684319.1 CDS RD1_4195 NC_008209.1 4063946 4064347 D hypothetical protein 4063946..4064347 Roseobacter denitrificans OCh 114 4195689 YP_684320.1 CDS RD1_4196 NC_008209.1 4064344 4065018 D MotA/TolQ/ExbB proton channel family protein 4064344..4065018 Roseobacter denitrificans OCh 114 4195690 YP_684321.1 CDS RD1_4197 NC_008209.1 4065011 4065367 D hypothetical protein 4065011..4065367 Roseobacter denitrificans OCh 114 4195691 YP_684322.1 CDS RD1_4198 NC_008209.1 4065364 4065738 D hypothetical protein 4065364..4065738 Roseobacter denitrificans OCh 114 4195692 YP_684323.1 CDS RD1_4199 NC_008209.1 4065735 4066670 D hypothetical protein 4065735..4066670 Roseobacter denitrificans OCh 114 4195693 YP_684324.1 CDS lytT NC_008209.1 4066711 4067547 R sensory transduction protein LytT complement(4066711..4067547) Roseobacter denitrificans OCh 114 4195655 YP_684325.1 CDS RD1_4201 NC_008209.1 4067598 4068491 D ABC transporter ATP-binding protein 4067598..4068491 Roseobacter denitrificans OCh 114 4195656 YP_684326.1 CDS RD1_4202 NC_008209.1 4068488 4069207 D ABC transporter permease 4068488..4069207 Roseobacter denitrificans OCh 114 4195657 YP_684327.1 CDS galE NC_008209.1 4069247 4070260 R UDP-glucose 4-epimerase complement(4069247..4070260) Roseobacter denitrificans OCh 114 4195658 YP_684328.1 CDS RD1_4204 NC_008209.1 4070381 4072048 D hypothetical protein 4070381..4072048 Roseobacter denitrificans OCh 114 4195659 YP_684329.1 CDS RD1_4205 NC_008209.1 4072100 4073122 D NeuB family protein 4072100..4073122 Roseobacter denitrificans OCh 114 4195660 YP_684330.1 CDS RD1_4206 NC_008209.1 4073119 4074135 D hypothetical protein 4073119..4074135 Roseobacter denitrificans OCh 114 4195661 YP_684331.1 CDS RD1_4207 NC_008209.1 4074268 4075878 D cytidine 5monophosphate N-acetylneuraminic acid synthetase 4074268..4075878 Roseobacter denitrificans OCh 114 4195662 YP_684332.1 CDS RD1_4208 NC_008209.1 4076021 4076143 R hypothetical protein complement(4076021..4076143) Roseobacter denitrificans OCh 114 4195663 YP_684333.1 CDS RD1_4210 NC_008209.1 4076920 4078983 D EAL/GGDEF/PAS domain-containing protein 4076920..4078983 Roseobacter denitrificans OCh 114 4195664 YP_684334.1 CDS RD1_4211 NC_008209.1 4079150 4079830 R hypothetical protein complement(4079150..4079830) Roseobacter denitrificans OCh 114 4195665 YP_684335.1 CDS RD1_4212 NC_008209.1 4079874 4079993 R hypothetical protein complement(4079874..4079993) Roseobacter denitrificans OCh 114 4195666 YP_684336.1 CDS RD1_4213 NC_008209.1 4080197 4081492 D hypothetical protein 4080197..4081492 Roseobacter denitrificans OCh 114 4195667 YP_684337.1 CDS RD1_4214 NC_008209.1 4081489 4082298 D hypothetical protein 4081489..4082298 Roseobacter denitrificans OCh 114 4195668 YP_684338.1 CDS RD1_4215 NC_008209.1 4082802 4083293 D hypothetical protein 4082802..4083293 Roseobacter denitrificans OCh 114 4195669 YP_684339.1 CDS RD1_4216 NC_008209.1 4083293 4084030 D hypothetical protein 4083293..4084030 Roseobacter denitrificans OCh 114 4195670 YP_684340.1 CDS RD1_4217 NC_008209.1 4084046 4086433 D hypothetical protein 4084046..4086433 Roseobacter denitrificans OCh 114 4195671 YP_684341.1 CDS RD1_4218 NC_008209.1 4086459 4086917 D hypothetical protein 4086459..4086917 Roseobacter denitrificans OCh 114 4195672 YP_684342.1 CDS RD1_4219 NC_008209.1 4086923 4087378 D hypothetical protein 4086923..4087378 Roseobacter denitrificans OCh 114 4195673 YP_684343.1 CDS RD1_4220 NC_008209.1 4087378 4087551 D hypothetical protein 4087378..4087551 Roseobacter denitrificans OCh 114 4195539 YP_684344.1 CDS RD1_4221 NC_008209.1 4087555 4088241 D hypothetical protein 4087555..4088241 Roseobacter denitrificans OCh 114 4195540 YP_684345.1 CDS RD1_4222 NC_008209.1 4088249 4090015 D hypothetical protein 4088249..4090015 Roseobacter denitrificans OCh 114 4195541 YP_684346.1 CDS RD1_4223 NC_008209.1 4090042 4090332 D hypothetical protein 4090042..4090332 Roseobacter denitrificans OCh 114 4195542 YP_684347.1 CDS RD1_4224 NC_008209.1 4090334 4090771 D hypothetical protein 4090334..4090771 Roseobacter denitrificans OCh 114 4195543 YP_684348.1 CDS RD1_4225 NC_008209.1 4090775 4091722 D hypothetical protein 4090775..4091722 Roseobacter denitrificans OCh 114 4195544 YP_684349.1 CDS RD1_4226 NC_008209.1 4091715 4095827 D hypothetical protein 4091715..4095827 Roseobacter denitrificans OCh 114 4195545 YP_684350.1 CDS RD1_4227 NC_008209.1 4095824 4096684 D hypothetical protein 4095824..4096684 Roseobacter denitrificans OCh 114 4195546 YP_684351.1 CDS RD1_4228 NC_008209.1 4096681 4098939 D hypothetical protein 4096681..4098939 Roseobacter denitrificans OCh 114 4195547 YP_684352.1 CDS RD1_4230 NC_008209.1 4098939 4102016 D hypothetical protein 4098939..4102016 Roseobacter denitrificans OCh 114 4195548 YP_684353.1 CDS RD1_4231 NC_008209.1 4102009 4103352 D ATPase 4102009..4103352 Roseobacter denitrificans OCh 114 4195549 YP_684354.1 CDS RD1_4232 NC_008209.1 4103349 4106678 D hypothetical protein 4103349..4106678 Roseobacter denitrificans OCh 114 4195550 YP_684355.1 CDS fdhB NC_008209.1 4107162 4108844 D formate dehydrogenase subunit beta 4107162..4108844 Roseobacter denitrificans OCh 114 4195551 YP_684356.1 CDS fdhA NC_008209.1 4108848 4111625 D formate dehydrogenase subunit alpha 4108848..4111625 Roseobacter denitrificans OCh 114 4195552 YP_684357.1 CDS fhs NC_008209.1 4111653 4113329 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 4111653..4113329 Roseobacter denitrificans OCh 114 4195553 YP_684358.1 CDS folD NC_008209.1 4113443 4114345 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 4113443..4114345 Roseobacter denitrificans OCh 114 4195554 YP_684359.1 CDS folD NC_008209.1 4114345 4115217 D FolD bifunctional protein 4114345..4115217 Roseobacter denitrificans OCh 114 4195555 YP_684360.1 CDS RD1_4238 NC_008209.1 4115318 4116163 R hypothetical protein complement(4115318..4116163) Roseobacter denitrificans OCh 114 4195556 YP_684361.1 CDS RD1_4240 NC_008209.1 4116341 4116799 D globin-like protein 4116341..4116799 Roseobacter denitrificans OCh 114 4195557 YP_684362.1 CDS RD1_4241 NC_008209.1 4116806 4118083 R hydroxypyruvate reductase complement(4116806..4118083) Roseobacter denitrificans OCh 114 4195558 YP_684363.1 CDS mclA NC_008209.1 4118070 4119047 R malyl-CoA lyase complement(4118070..4119047) Roseobacter denitrificans OCh 114 4196139 YP_684364.1 CDS narP NC_008209.1 4119156 4119788 R nitrate/nitrite response regulator protein complement(4119156..4119788) Roseobacter denitrificans OCh 114 4196140 YP_684365.1 CDS RD1_4244 NC_008209.1 4119999 4121240 D aminotransferase 4119999..4121240 Roseobacter denitrificans OCh 114 4196141 YP_684366.1 CDS sucC NC_008209.1 4121281 4122480 D catalyzes the formation of malyl-CoA from malate and CoA; malate--CoA ligase subunit beta 4121281..4122480 Roseobacter denitrificans OCh 114 4196142 YP_684367.1 CDS mtkB NC_008209.1 4122477 4123370 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4122477..4123370 Roseobacter denitrificans OCh 114 4196143 YP_684368.1 CDS gyaR NC_008209.1 4123370 4124362 D glyoxylate reductase 4123370..4124362 Roseobacter denitrificans OCh 114 4196144 YP_684369.1 CDS ppc NC_008209.1 4124362 4126977 D phosphoenolpyruvate carboxylase 4124362..4126977 Roseobacter denitrificans OCh 114 4196145 YP_684370.1 CDS glyA NC_008209.1 4127012 4128307 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4127012..4128307 Roseobacter denitrificans OCh 114 4196146 YP_684371.1 CDS glnT NC_008209.1 4128395 4129750 R glutamine synthetase complement(4128395..4129750) Roseobacter denitrificans OCh 114 4196147 YP_684372.1 CDS RD1_4251 NC_008209.1 4129856 4131196 R glutamate synthase family protein complement(4129856..4131196) Roseobacter denitrificans OCh 114 4196148 YP_684373.1 CDS RD1_4252 NC_008209.1 4131207 4131890 R FwdC/FmdC family protein complement(4131207..4131890) Roseobacter denitrificans OCh 114 4196149 YP_684374.1 CDS RD1_4253 NC_008209.1 4131890 4132819 R glutamine amidotransferase complement(4131890..4132819) Roseobacter denitrificans OCh 114 4196150 YP_771713.1 CDS RD1_A0001 NC_008386.1 799 2088 D hypothetical protein 799..2088 Roseobacter denitrificans OCh 114 4312008 YP_771714.1 CDS gltS NC_008386.1 2096 3301 R sodium/glutamate symporter complement(2096..3301) Roseobacter denitrificans OCh 114 4312009 YP_771715.1 CDS RD1_A0003 NC_008386.1 3317 3451 R hypothetical protein complement(3317..3451) Roseobacter denitrificans OCh 114 4312010 YP_771716.1 CDS opuD NC_008386.1 3438 4949 R glycine betaine transporter complement(3438..4949) Roseobacter denitrificans OCh 114 4312011 YP_771717.1 CDS RD1_A0005 NC_008386.1 5140 6174 R integrase catalytic subunit complement(5140..6174) Roseobacter denitrificans OCh 114 4312012 YP_771718.1 CDS RD1_A0006 NC_008386.1 6349 7359 R hypothetical protein complement(6349..7359) Roseobacter denitrificans OCh 114 4312013 YP_771719.1 CDS virB11 NC_008386.1 7740 8723 R type IV secretory pathway, VirB11 component, putative complement(7740..8723) Roseobacter denitrificans OCh 114 4312014 YP_771720.1 CDS RD1_A0008 NC_008386.1 8720 10051 R putative VirB10 protein complement(8720..10051) Roseobacter denitrificans OCh 114 4312015 YP_771721.1 CDS RD1_A0009 NC_008386.1 10051 10806 R putative VirB9 protein complement(10051..10806) Roseobacter denitrificans OCh 114 4311950 YP_771722.1 CDS RD1_A0010 NC_008386.1 10806 11480 R VirB8 protein complement(10806..11480) Roseobacter denitrificans OCh 114 4311951 YP_771723.1 CDS RD1_A0011 NC_008386.1 11544 12716 R putative conjugal transfer protein complement(11544..12716) Roseobacter denitrificans OCh 114 4311952 YP_771724.1 CDS RD1_A0012 NC_008386.1 12720 13175 R hypothetical protein complement(12720..13175) Roseobacter denitrificans OCh 114 4311953 YP_771725.1 CDS RD1_A0013 NC_008386.1 13178 13888 R RC163, putative complement(13178..13888) Roseobacter denitrificans OCh 114 4311954 YP_771726.1 CDS virB4 NC_008386.1 14019 16379 R VirB4 protein, putative complement(14019..16379) Roseobacter denitrificans OCh 114 4311955 YP_771727.1 CDS RD1_A0015 NC_008386.1 16372 16647 R type IV secretion system protein, putative complement(16372..16647) Roseobacter denitrificans OCh 114 4311956 YP_771728.1 CDS RD1_A0016 NC_008386.1 16650 16931 R hypothetical protein complement(16650..16931) Roseobacter denitrificans OCh 114 4311957 YP_771729.1 CDS RD1_A0017 NC_008386.1 16919 17629 R transglycosylase, putative complement(16919..17629) Roseobacter denitrificans OCh 114 4311958 YP_771730.1 CDS RD1_A0018 NC_008386.1 17608 18087 R hypothetical protein complement(17608..18087) Roseobacter denitrificans OCh 114 4311959 YP_771731.1 CDS RD1_A0019 NC_008386.1 19212 19340 R hypothetical protein complement(19212..19340) Roseobacter denitrificans OCh 114 4311960 YP_771732.1 CDS RD1_A0021 NC_008386.1 19963 21318 D RC102 19963..21318 Roseobacter denitrificans OCh 114 4311961 YP_771733.1 CDS RD1_A0023 NC_008386.1 21315 22337 D RC101 21315..22337 Roseobacter denitrificans OCh 114 4311962 YP_771734.1 CDS RD1_A0024 NC_008386.1 22578 23891 D replication protein C 22578..23891 Roseobacter denitrificans OCh 114 4311963 YP_771735.1 CDS vagC NC_008386.1 23967 24197 D virulence associated protein, putative 23967..24197 Roseobacter denitrificans OCh 114 4311964 YP_771736.1 CDS RD1_A0026 NC_008386.1 24194 24616 D hypothetical protein 24194..24616 Roseobacter denitrificans OCh 114 4311965 YP_771737.1 CDS RD1_A0027 NC_008386.1 24822 25127 R hypothetical protein complement(24822..25127) Roseobacter denitrificans OCh 114 4311966 YP_771738.1 CDS RD1_A0028 NC_008386.1 24837 25184 D hypothetical protein 24837..25184 Roseobacter denitrificans OCh 114 4311967 YP_771739.1 CDS RD1_A0030 NC_008386.1 25181 26395 R integrase, putative complement(25181..26395) Roseobacter denitrificans OCh 114 4311968 YP_771740.1 CDS RD1_A0031 NC_008386.1 26520 27482 D hypothetical protein 26520..27482 Roseobacter denitrificans OCh 114 4311969 YP_771741.1 CDS RD1_A0032 NC_008386.1 27479 28108 D transcriptional regulator (Ypuh-like), putative 27479..28108 Roseobacter denitrificans OCh 114 4311931 YP_771742.1 CDS RD1_A0033 NC_008386.1 28518 28910 D hypothetical protein 28518..28910 Roseobacter denitrificans OCh 114 4311932 YP_771743.1 CDS RD1_A0034 NC_008386.1 28917 29300 D hypothetical protein 28917..29300 Roseobacter denitrificans OCh 114 4311933 YP_771744.1 CDS RD1_A0035 NC_008386.1 29455 32001 D hypothetical protein 29455..32001 Roseobacter denitrificans OCh 114 4311934 YP_771745.1 CDS RD1_A0036 NC_008386.1 31979 33286 D hypothetical protein 31979..33286 Roseobacter denitrificans OCh 114 4311935 YP_771746.1 CDS RD1_A0037 NC_008386.1 33289 35469 D ATP-dependent helicase, putative 33289..35469 Roseobacter denitrificans OCh 114 4311936 YP_771747.1 CDS RD1_A0038 NC_008386.1 35608 36084 R hypothetical protein complement(35608..36084) Roseobacter denitrificans OCh 114 4311937 YP_771748.1 CDS RD1_A0039 NC_008386.1 36152 37270 R 2-methylthioadenine synthetase complement(36152..37270) Roseobacter denitrificans OCh 114 4311938 YP_771749.1 CDS RD1_A0040 NC_008386.1 37272 37760 R hypothetical protein complement(37272..37760) Roseobacter denitrificans OCh 114 4311939 YP_771750.1 CDS RD1_A0041 NC_008386.1 37738 39483 R hypothetical protein complement(37738..39483) Roseobacter denitrificans OCh 114 4311940 YP_771751.1 CDS RD1_A0043 NC_008386.1 39480 40715 R RC169 complement(39480..40715) Roseobacter denitrificans OCh 114 4311941 YP_771752.1 CDS RD1_A0044 NC_008386.1 40781 41059 R hypothetical protein complement(40781..41059) Roseobacter denitrificans OCh 114 4311942 YP_771753.1 CDS RD1_A0045 NC_008386.1 41001 41819 R from OMNI|NT01MC3169; hypothetical protein complement(41001..41819) Roseobacter denitrificans OCh 114 4311943 YP_771754.1 CDS RD1_A0046 NC_008386.1 41892 43037 D exonuclease SbcD, putative 41892..43037 Roseobacter denitrificans OCh 114 4311944 YP_771755.1 CDS RD1_A0047 NC_008386.1 43034 46093 D exonuclease SbcC, putative 43034..46093 Roseobacter denitrificans OCh 114 4311945 YP_771756.1 CDS RD1_A0048 NC_008386.1 46109 46399 D hypothetical protein 46109..46399 Roseobacter denitrificans OCh 114 4311946 YP_771757.1 CDS RD1_A0049 NC_008386.1 46690 47658 R hypothetical protein complement(46690..47658) Roseobacter denitrificans OCh 114 4311947 YP_771758.1 CDS RD1_A0050 NC_008386.1 47573 48919 R hypothetical protein complement(47573..48919) Roseobacter denitrificans OCh 114 4311948 YP_771759.1 CDS xerD NC_008386.1 49284 50192 R tyrosine recombinase complement(49284..50192) Roseobacter denitrificans OCh 114 4311949 YP_771760.1 CDS RD1_A0052 NC_008386.1 50313 50930 R hypothetical protein complement(50313..50930) Roseobacter denitrificans OCh 114 4311970 YP_771761.1 CDS RD1_A0053 NC_008386.1 51026 51199 D hypothetical protein 51026..51199 Roseobacter denitrificans OCh 114 4311971 YP_771762.1 CDS frpC NC_008386.1 52602 60155 D iron-regulated protein frpC, putative 52602..60155 Roseobacter denitrificans OCh 114 4311972 YP_771763.1 CDS RD1_A0055 NC_008386.1 60127 60360 D hypothetical protein 60127..60360 Roseobacter denitrificans OCh 114 4311973 YP_771764.1 CDS RD1_A0056 NC_008386.1 60546 60863 D hypothetical protein 60546..60863 Roseobacter denitrificans OCh 114 4311974 YP_771765.1 CDS RD1_A0057 NC_008386.1 60980 61171 D RC227 60980..61171 Roseobacter denitrificans OCh 114 4311975 YP_771766.1 CDS RD1_A0058 NC_008386.1 61210 61914 R transposase, putative complement(61210..61914) Roseobacter denitrificans OCh 114 4311976 YP_771767.1 CDS RD1_A0059 NC_008386.1 61916 62677 D putative transposase, ATP-binding component 61916..62677 Roseobacter denitrificans OCh 114 4311977 YP_771768.1 CDS RD1_A0060 NC_008386.1 63041 63454 R thermonuclease, putative complement(63041..63454) Roseobacter denitrificans OCh 114 4311978 YP_771769.1 CDS RD1_A0061 NC_008386.1 63552 64160 R ardC-like protein complement(63552..64160) Roseobacter denitrificans OCh 114 4311979 YP_771770.1 CDS RD1_A0062 NC_008386.1 64309 66237 R hypothetical protein complement(64309..66237) Roseobacter denitrificans OCh 114 4311980 YP_771771.1 CDS exoI NC_008386.1 66481 67182 D succinoglycan biosynthesis protein ExoI 66481..67182 Roseobacter denitrificans OCh 114 4311981 YP_771772.1 CDS RD1_A0065 NC_008386.1 67601 67930 D hypothetical protein 67601..67930 Roseobacter denitrificans OCh 114 4311983 YP_771773.1 CDS tnp NC_008386.1 68408 68989 D transposon resolvase 68408..68989 Roseobacter denitrificans OCh 114 4311984 YP_771774.1 CDS RD1_A0067 NC_008386.1 69705 70049 D hypothetical protein 69705..70049 Roseobacter denitrificans OCh 114 4311985 YP_771775.1 CDS RD1_A0068 NC_008386.1 69819 70151 R hypothetical protein complement(69819..70151) Roseobacter denitrificans OCh 114 4311986 YP_771776.1 CDS RD1_A0069 NC_008386.1 70063 70485 R succinoglycan biosynthesis protein Ex complement(70063..70485) Roseobacter denitrificans OCh 114 4311987 YP_771777.1 CDS RD1_A0070 NC_008386.1 70616 71179 R hypothetical protein complement(70616..71179) Roseobacter denitrificans OCh 114 4311988 YP_771778.1 CDS RD1_A0071 NC_008386.1 71829 72164 D hypothetical protein 71829..72164 Roseobacter denitrificans OCh 114 4311989 YP_771779.1 CDS RD1_A0072 NC_008386.1 72419 74314 D plasmid stabilization protein, putative 72419..74314 Roseobacter denitrificans OCh 114 4311990 YP_771780.1 CDS RD1_A0073 NC_008386.1 74414 74755 D hypothetical protein 74414..74755 Roseobacter denitrificans OCh 114 4311991 YP_771781.1 CDS RD1_A0074 NC_008386.1 74755 75591 D hypothetical protein 74755..75591 Roseobacter denitrificans OCh 114 4311992 YP_771782.1 CDS RD1_A0075 NC_008386.1 75564 75863 R hypothetical protein complement(75564..75863) Roseobacter denitrificans OCh 114 4311993 YP_771783.1 CDS RD1_A0076 NC_008386.1 75736 76257 R hypothetical protein complement(75736..76257) Roseobacter denitrificans OCh 114 4311994 YP_771784.1 CDS RD1_A0077 NC_008386.1 75934 76443 D hypothetical protein 75934..76443 Roseobacter denitrificans OCh 114 4311995 YP_771785.1 CDS rpsC NC_008386.1 76587 76832 D 30S ribosomal protein S3, putative 76587..76832 Roseobacter denitrificans OCh 114 4311996 YP_771786.1 CDS RD1_A0079 NC_008386.1 76832 77248 D hypothetical protein 76832..77248 Roseobacter denitrificans OCh 114 4311997 YP_771787.1 CDS RD1_A0080 NC_008386.1 77368 77481 D hypothetical protein 77368..77481 Roseobacter denitrificans OCh 114 4311998 YP_771788.1 CDS RD1_A0081 NC_008386.1 77633 77725 R hypothetical protein complement(77633..77725) Roseobacter denitrificans OCh 114 4311999 YP_771789.1 CDS RD1_A0082 NC_008386.1 77799 78023 R hypothetical protein complement(77799..78023) Roseobacter denitrificans OCh 114 4312000 YP_771790.1 CDS RD1_A0083 NC_008386.1 78076 78573 D RC183 78076..78573 Roseobacter denitrificans OCh 114 4312001 YP_771791.1 CDS RD1_A0084 NC_008386.1 79343 80545 D drug resistance transporter Bcr 79343..80545 Roseobacter denitrificans OCh 114 4312002 YP_771792.1 CDS RD1_A0085 NC_008386.1 81274 82236 R pirin protein, putative complement(81274..82236) Roseobacter denitrificans OCh 114 4312003 YP_771793.1 CDS RD1_A0086 NC_008386.1 82315 82956 R phosphoglycerate mutase domain-containing protein complement(82315..82956) Roseobacter denitrificans OCh 114 4312004 YP_771794.1 CDS RD1_A0087 NC_008386.1 83021 85210 R isoquinoline 1-oxidoreductase complement(83021..85210) Roseobacter denitrificans OCh 114 4312005 YP_771795.1 CDS iorA NC_008386.1 85212 85664 R isoquinoline 1-oxidoreductase complement(85212..85664) Roseobacter denitrificans OCh 114 4312006 YP_771796.1 CDS RD1_A0089 NC_008386.1 85749 87347 R major facilitator superfamily protein complement(85749..87347) Roseobacter denitrificans OCh 114 4312007 YP_771797.1 CDS RD1_A0090 NC_008386.1 87331 87630 R hypothetical protein complement(87331..87630) Roseobacter denitrificans OCh 114 4312016 YP_771798.1 CDS dps NC_008386.1 87690 88193 R DNA protection during starvation protein, putative complement(87690..88193) Roseobacter denitrificans OCh 114 4312017 YP_771799.1 CDS RD1_A0092 NC_008386.1 88309 88755 R RC145 complement(88309..88755) Roseobacter denitrificans OCh 114 4312018 YP_771800.1 CDS RD1_A0093 NC_008386.1 88721 90025 R hypothetical protein complement(88721..90025) Roseobacter denitrificans OCh 114 4312019 YP_771801.1 CDS RD1_A0094 NC_008386.1 90092 90799 R putative hydrolase complement(90092..90799) Roseobacter denitrificans OCh 114 4312020 YP_771802.1 CDS RD1_A0096 NC_008386.1 90824 91069 R hypothetical protein complement(90824..91069) Roseobacter denitrificans OCh 114 4312022 YP_771803.1 CDS RD1_A0097 NC_008386.1 91168 91794 R RC150 complement(91168..91794) Roseobacter denitrificans OCh 114 4312023 YP_771804.1 CDS RD1_A0098 NC_008386.1 91806 92816 R putative dioxygenase complement(91806..92816) Roseobacter denitrificans OCh 114 4312024 YP_771805.1 CDS RD1_A0099 NC_008386.1 92846 93760 D LysR family transcriptional regulator 92846..93760 Roseobacter denitrificans OCh 114 4312025 YP_771806.1 CDS RD1_A0100 NC_008386.1 93840 94742 R AraC family transcription regulator complement(93840..94742) Roseobacter denitrificans OCh 114 4312026 YP_771807.1 CDS RD1_A0101 NC_008386.1 96004 96573 D AraC family transcriptional regulator 96004..96573 Roseobacter denitrificans OCh 114 4312027 YP_771808.1 CDS RD1_A0104 NC_008386.1 96937 97056 D hypothetical protein 96937..97056 Roseobacter denitrificans OCh 114 4312028 YP_771809.1 CDS RD1_A0105 NC_008386.1 97386 98282 D ArdC protein 97386..98282 Roseobacter denitrificans OCh 114 4312029 YP_771810.1 CDS RD1_A0106 NC_008386.1 98282 98869 D RC187 98282..98869 Roseobacter denitrificans OCh 114 4312030 YP_771811.1 CDS RD1_A0107 NC_008386.1 98961 99095 D hypothetical protein 98961..99095 Roseobacter denitrificans OCh 114 4312031 YP_771812.1 CDS RD1_A0108 NC_008386.1 99308 99955 R hypothetical protein complement(99308..99955) Roseobacter denitrificans OCh 114 4312032 YP_771813.1 CDS virC1 NC_008386.1 99942 100655 R putative crown gall tumor protein VirC1 complement(99942..100655) Roseobacter denitrificans OCh 114 4312033 YP_771814.1 CDS RD1_A0110 NC_008386.1 100818 100955 D hypothetical protein 100818..100955 Roseobacter denitrificans OCh 114 4312034 YP_771815.1 CDS virD1 NC_008386.1 101221 101655 D type IV secretion system T-DNA border endonuclease VirD1 101221..101655 Roseobacter denitrificans OCh 114 4312035 YP_771816.1 CDS virD2 NC_008386.1 101856 104000 D VirD2 protein 101856..104000 Roseobacter denitrificans OCh 114 4312036 YP_771817.1 CDS RD1_A0114 NC_008386.1 104010 106175 D coupling protein TraG/VirD4 family; type IV secretion system protein VirD4 104010..106175 Roseobacter denitrificans OCh 114 4311930 YP_771818.1 CDS RD1_B0001 NC_008387.1 780 1076 D hypothetical protein 780..1076 Roseobacter denitrificans OCh 114 4312037 YP_771819.1 CDS RD1_B0002 NC_008387.1 1073 1288 D hypothetical protein 1073..1288 Roseobacter denitrificans OCh 114 4312038 YP_771820.1 CDS RD1_B0003 NC_008387.1 1298 3151 D hypothetical protein 1298..3151 Roseobacter denitrificans OCh 114 4312039 YP_771821.1 CDS RD1_B0004 NC_008387.1 3412 4581 D oxidoreductase, putative 3412..4581 Roseobacter denitrificans OCh 114 4312040 YP_771822.1 CDS RD1_B0005 NC_008387.1 4578 5579 D hypothetical protein 4578..5579 Roseobacter denitrificans OCh 114 4312041 YP_771823.1 CDS RD1_B0006 NC_008387.1 5579 6835 D glycosyl transferase, putative 5579..6835 Roseobacter denitrificans OCh 114 4312042 YP_771824.1 CDS RD1_B0007 NC_008387.1 6830 7768 R glycosyl transferase, putative complement(6830..7768) Roseobacter denitrificans OCh 114 4312043 YP_771825.1 CDS RD1_B0008 NC_008387.1 7855 9468 R hypothetical protein complement(7855..9468) Roseobacter denitrificans OCh 114 4312044 YP_771826.1 CDS RD1_B0009 NC_008387.1 9616 10605 D glycosyl transferase, putative 9616..10605 Roseobacter denitrificans OCh 114 4312045 YP_771827.1 CDS RD1_B0010 NC_008387.1 10606 11451 D sulfotransferase, putative 10606..11451 Roseobacter denitrificans OCh 114 4312046 YP_771828.1 CDS RD1_B0011 NC_008387.1 11444 12412 D glycosyl transferase, putative 11444..12412 Roseobacter denitrificans OCh 114 4312047 YP_771829.1 CDS RD1_B0012 NC_008387.1 12409 13782 D polysaccharide biosynthesis protein, putative 12409..13782 Roseobacter denitrificans OCh 114 4312048 YP_771830.1 CDS RD1_B0013 NC_008387.1 13951 15846 D ABC transporter, putative 13951..15846 Roseobacter denitrificans OCh 114 4312049 YP_771831.1 CDS RD1_B0014 NC_008387.1 15843 17156 D HlyD family secretion protein 15843..17156 Roseobacter denitrificans OCh 114 4312050 YP_771832.1 CDS RD1_B0015 NC_008387.1 17418 18104 D PAP2 superfamily protein, putative 17418..18104 Roseobacter denitrificans OCh 114 4312051 YP_771833.1 CDS noeK NC_008387.1 18171 19541 R phosphomannomutase complement(18171..19541) Roseobacter denitrificans OCh 114 4312052 YP_771834.1 CDS rfbA NC_008387.1 19553 20431 R glucose-1-phosphate thymidylyltransferase complement(19553..20431) Roseobacter denitrificans OCh 114 4312053 YP_771835.1 CDS rfbD NC_008387.1 20444 21367 R dTDP-4-dehydrorhamnose reductase complement(20444..21367) Roseobacter denitrificans OCh 114 4312054 YP_771836.1 CDS rfbB NC_008387.1 21286 22362 R dTDP-glucose 4,6-dehydratase complement(21286..22362) Roseobacter denitrificans OCh 114 4312055 YP_771837.1 CDS rfbC NC_008387.1 22359 22955 R dTDP-4-dehydrorhamnose 3,5-epimerase complement(22359..22955) Roseobacter denitrificans OCh 114 4312056 YP_771838.1 CDS RD1_B0021 NC_008387.1 23106 23927 R exopolysaccharide biosynthesis complement(23106..23927) Roseobacter denitrificans OCh 114 4312057 YP_771839.1 CDS RD1_B0022 NC_008387.1 23948 25495 R putative polysaccharide chain length determinant protein complement(23948..25495) Roseobacter denitrificans OCh 114 4312058 YP_771840.1 CDS exeA NC_008387.1 25492 26373 R general secretion pathway protein A complement(25492..26373) Roseobacter denitrificans OCh 114 4312059 YP_771841.1 CDS RD1_B0024 NC_008387.1 26834 27535 D sugar transferase 26834..27535 Roseobacter denitrificans OCh 114 4312060 YP_771842.1 CDS RD1_B0025 NC_008387.1 27786 30185 D TPR repeat-containing protein 27786..30185 Roseobacter denitrificans OCh 114 4312061 YP_771843.1 CDS RD1_B0026 NC_008387.1 30373 30978 D polysaccharide biosynthesis protein 30373..30978 Roseobacter denitrificans OCh 114 4312062 YP_771844.1 CDS RD1_B0027 NC_008387.1 30941 32383 D hypothetical protein 30941..32383 Roseobacter denitrificans OCh 114 4312063 YP_771845.1 CDS RD1_B0028 NC_008387.1 32417 33115 D rhomboid family protein, putative 32417..33115 Roseobacter denitrificans OCh 114 4312064 YP_771846.1 CDS RD1_B0029 NC_008387.1 33190 35100 R hypothetical protein complement(33190..35100) Roseobacter denitrificans OCh 114 4312065 YP_771847.1 CDS sat NC_008387.1 35183 36895 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein complement(35183..36895) Roseobacter denitrificans OCh 114 4312066 YP_771848.1 CDS RD1_B0031 NC_008387.1 37360 38409 D von Willebrand factor type A domain-containing protein 37360..38409 Roseobacter denitrificans OCh 114 4312067 YP_771849.1 CDS RD1_B0032 NC_008387.1 38523 39299 D TPR domain-containing protein 38523..39299 Roseobacter denitrificans OCh 114 4312068 YP_771850.1 CDS RD1_B0033 NC_008387.1 38935 40548 D TPR domain-containing protein 38935..40548 Roseobacter denitrificans OCh 114 4312069 YP_771851.1 CDS RD1_B0034 NC_008387.1 40696 41337 R hypothetical protein complement(40696..41337) Roseobacter denitrificans OCh 114 4312070 YP_771852.1 CDS RD1_B0035 NC_008387.1 41786 42463 R hypothetical protein complement(41786..42463) Roseobacter denitrificans OCh 114 4312071 YP_771853.1 CDS xanB NC_008387.1 42760 44181 R mannose-1-phosphate guanylyltransferase complement(42760..44181) Roseobacter denitrificans OCh 114 4312072 YP_771854.1 CDS RD1_B0037 NC_008387.1 44427 46031 D hypothetical protein 44427..46031 Roseobacter denitrificans OCh 114 4312073 YP_771855.1 CDS RD1_B0038 NC_008387.1 46730 47722 D acyltransferase, putative 46730..47722 Roseobacter denitrificans OCh 114 4312074 YP_771856.1 CDS RD1_B0039 NC_008387.1 47874 48629 R hypothetical protein complement(47874..48629) Roseobacter denitrificans OCh 114 4312075 YP_771857.1 CDS galE NC_008387.1 48634 49662 R UDP-glucose 4-epimerase complement(48634..49662) Roseobacter denitrificans OCh 114 4312076 YP_771858.1 CDS RD1_B0041 NC_008387.1 49793 50500 D hypothetical protein 49793..50500 Roseobacter denitrificans OCh 114 4312077 YP_771859.1 CDS RD1_B0042 NC_008387.1 50466 50867 D hypothetical protein 50466..50867 Roseobacter denitrificans OCh 114 4312078 YP_771860.1 CDS RD1_B0043 NC_008387.1 50950 51939 D UDP-glucuronate 5'-epimerase 50950..51939 Roseobacter denitrificans OCh 114 4312079 YP_771861.1 CDS RD1_B0044 NC_008387.1 52178 52312 R hypothetical protein complement(52178..52312) Roseobacter denitrificans OCh 114 4312080 YP_771862.1 CDS RD1_B0046 NC_008387.1 52412 53578 D hypothetical protein 52412..53578 Roseobacter denitrificans OCh 114 4312081 YP_771863.1 CDS RD1_B0047 NC_008387.1 53605 54585 R chromosome partitioning protein, putative complement(53605..54585) Roseobacter denitrificans OCh 114 4312082 YP_771864.1 CDS rep NC_008387.1 54712 56103 R putative replication protein complement(54712..56103) Roseobacter denitrificans OCh 114 4312083 YP_771865.1 CDS repA NC_008387.1 56583 57590 D hypothetical protein 56583..57590 Roseobacter denitrificans OCh 114 4312084 YP_771866.1 CDS RD1_B0050 NC_008387.1 57733 58776 D glycosyl transferase group 2 family protein 57733..58776 Roseobacter denitrificans OCh 114 4312085 YP_771867.1 CDS RD1_B0051 NC_008387.1 58832 60127 R hypothetical protein complement(58832..60127) Roseobacter denitrificans OCh 114 4312086 YP_771868.1 CDS RD1_B0052 NC_008387.1 60752 62851 D hypothetical protein 60752..62851 Roseobacter denitrificans OCh 114 4312087 YP_771869.1 CDS RD1_B0053 NC_008387.1 62817 64121 D rhizobiocin 62817..64121 Roseobacter denitrificans OCh 114 4312088 YP_771870.1 CDS RD1_B0054 NC_008387.1 64484 64819 D hypothetical protein 64484..64819 Roseobacter denitrificans OCh 114 4312089 YP_771871.1 CDS RD1_B0055 NC_008387.1 65438 67375 D acyltransferase family protein 65438..67375 Roseobacter denitrificans OCh 114 4312090 YP_771872.1 CDS RD1_B0056 NC_008387.1 67499 68419 D hypothetical protein 67499..68419 Roseobacter denitrificans OCh 114 4312091 YP_771873.1 CDS ugd NC_008387.1 68519 69211 R UDP-glucose 6-dehydrogenase complement(68519..69211) Roseobacter denitrificans OCh 114 4312092 YP_771874.1 CDS RD1_C0001 NC_008388.1 617 1168 R hypothetical protein complement(617..1168) Roseobacter denitrificans OCh 114 4312093 YP_771875.1 CDS virD NC_008388.1 1189 2598 R virD4 protein, putative complement(1189..2598) Roseobacter denitrificans OCh 114 4312094 YP_771876.1 CDS RD1_C0003 NC_008388.1 2434 3084 D hypothetical protein 2434..3084 Roseobacter denitrificans OCh 114 4312095 YP_771877.1 CDS RD1_C0004 NC_008388.1 2841 3137 R mobilization protein complement(2841..3137) Roseobacter denitrificans OCh 114 4312096 YP_771878.1 CDS RD1_C0005 NC_008388.1 3415 3702 R myosin I heavy chain kinase complement(3415..3702) Roseobacter denitrificans OCh 114 4312097 YP_771879.1 CDS mobL NC_008388.1 3761 5044 D mobilization protein 3761..5044 Roseobacter denitrificans OCh 114 4312098 YP_771880.1 CDS RD1_C0007 NC_008388.1 5038 5385 R hypothetical protein complement(5038..5385) Roseobacter denitrificans OCh 114 4312099 YP_771881.1 CDS RD1_C0008 NC_008388.1 5623 7875 D hypothetical protein 5623..7875 Roseobacter denitrificans OCh 114 4312100 YP_771882.1 CDS RD1_C0009 NC_008388.1 7844 8755 D hypothetical protein 7844..8755 Roseobacter denitrificans OCh 114 4312101 YP_771883.1 CDS RD1_C0010 NC_008388.1 9762 10301 D site-specific recombinase 9762..10301 Roseobacter denitrificans OCh 114 4312102 YP_771884.1 CDS RD1_C0011 NC_008388.1 10386 11681 D hypothetical protein 10386..11681 Roseobacter denitrificans OCh 114 4312103 YP_771885.1 CDS RD1_C0012 NC_008388.1 11666 12763 D hypothetical protein 11666..12763 Roseobacter denitrificans OCh 114 4312104 YP_771886.1 CDS RD1_C0013 NC_008388.1 12770 13630 R hypothetical protein complement(12770..13630) Roseobacter denitrificans OCh 114 4312105 YP_771887.1 CDS RD1_C0014 NC_008388.1 13627 14811 R DNA-cytosine methyltransferase, putative complement(13627..14811) Roseobacter denitrificans OCh 114 4312106 YP_771888.1 CDS RD1_C0015 NC_008388.1 14890 15168 R partition protein ParB complement(14890..15168) Roseobacter denitrificans OCh 114 4312107 YP_771889.1 CDS parA NC_008388.1 15152 15820 R partition protein ParA complement(15152..15820) Roseobacter denitrificans OCh 114 4312108 YP_771890.1 CDS RD1_D0001 NC_008389.1 838 936 R hypothetical protein complement(838..936) Roseobacter denitrificans OCh 114 4312109 YP_771891.1 CDS RD1_D0002 NC_008389.1 983 1570 D oxidoreductase, putative 983..1570 Roseobacter denitrificans OCh 114 4312110 YP_771892.1 CDS RD1_D0003 NC_008389.1 1855 2859 D hypothetical protein 1855..2859 Roseobacter denitrificans OCh 114 4312111 YP_771893.1 CDS RD1_D0004 NC_008389.1 2663 3529 D hypothetical protein 2663..3529 Roseobacter denitrificans OCh 114 4312112 YP_771894.1 CDS RD1_D0005 NC_008389.1 4109 4621 R hypothetical protein complement(4109..4621) Roseobacter denitrificans OCh 114 4312113 YP_771895.1 CDS RD1_D0006 NC_008389.1 4784 5047 D hypothetical protein 4784..5047 Roseobacter denitrificans OCh 114 4312021 RD1_0066 tRNA RD1_0066 NC_008209.1 67695 67780 D tRNA-Leu 67695..67780 Roseobacter denitrificans OCh 114 4198312 RD1_0233 tRNA RD1_0233 NC_008209.1 233441 233517 D tRNA-Arg 233441..233517 Roseobacter denitrificans OCh 114 4195061 RD1_0717 tRNA RD1_0717 NC_008209.1 692586 692660 R tRNA-Val complement(692586..692660) Roseobacter denitrificans OCh 114 4198010 RD1_0728 tRNA RD1_0728 NC_008209.1 704917 704993 D tRNA-Ile 704917..704993 Roseobacter denitrificans OCh 114 4197909 RD1_0729 tRNA RD1_0729 NC_008209.1 705012 705087 D tRNA-Ala 705012..705087 Roseobacter denitrificans OCh 114 4197910 RD1_0812 tRNA RD1_0812 NC_008209.1 795609 795684 R tRNA-Lys complement(795609..795684) Roseobacter denitrificans OCh 114 4197605 RD1_0994 tRNA RD1_0994 NC_008209.1 959492 959567 R tRNA-Ala complement(959492..959567) Roseobacter denitrificans OCh 114 4197948 RD1_1063 tRNA RD1_1063 NC_008209.1 1024785 1024859 R tRNA-Thr complement(1024785..1024859) Roseobacter denitrificans OCh 114 4198306 RD1_1148 tRNA RD1_1148 NC_008209.1 1111279 1111355 R tRNA-Met complement(1111279..1111355) Roseobacter denitrificans OCh 114 4197553 RD1_1257 tRNA RD1_1257 NC_008209.1 1217959 1218036 D tRNA-Arg 1217959..1218036 Roseobacter denitrificans OCh 114 4197426 RD1_1285 tRNA RD1_1285 NC_008209.1 1247945 1248021 D tRNA-Met 1247945..1248021 Roseobacter denitrificans OCh 114 4197417 RD1_1466 tRNA RD1_1466 NC_008209.1 1390831 1390907 D tRNA-Arg 1390831..1390907 Roseobacter denitrificans OCh 114 4197239 RD1_1810 tRNA RD1_1810 NC_008209.1 1734852 1734928 D tRNA-His 1734852..1734928 Roseobacter denitrificans OCh 114 4196905 RD1_1844 tRNA RD1_1844 NC_008209.1 1769281 1769355 D tRNA-Phe 1769281..1769355 Roseobacter denitrificans OCh 114 4196864 RD1_1853 tRNA RD1_1853 NC_008209.1 1775819 1775892 R tRNA-Cys complement(1775819..1775892) Roseobacter denitrificans OCh 114 4196871 RD1_1971 tRNA RD1_1971 NC_008209.1 1882719 1882804 D tRNA-Leu 1882719..1882804 Roseobacter denitrificans OCh 114 4196756 RD1_1972 tRNA RD1_1972 NC_008209.1 1883048 1883121 D tRNA-Gly 1883048..1883121 Roseobacter denitrificans OCh 114 4196757 RD1_2227 tRNA RD1_2227 NC_008209.1 2130499 2130574 D tRNA-Thr 2130499..2130574 Roseobacter denitrificans OCh 114 4196534 RD1_2248 tRNA RD1_2248 NC_008209.1 2152866 2152940 R tRNA-Asn complement(2152866..2152940) Roseobacter denitrificans OCh 114 4196479 RD1_2251 tRNA RD1_2251 NC_008209.1 2155368 2155444 R tRNA-Met complement(2155368..2155444) Roseobacter denitrificans OCh 114 4196482 RD1_2301 tRNA RD1_2301 NC_008209.1 2197740 2197829 D tRNA-Ser 2197740..2197829 Roseobacter denitrificans OCh 114 4196454 RD1_2512 tRNA RD1_2512 NC_008209.1 2397660 2397745 D tRNA-Leu 2397660..2397745 Roseobacter denitrificans OCh 114 4195260 RD1_2535 tRNA RD1_2535 NC_008209.1 2424815 2424889 R tRNA-Glu complement(2424815..2424889) Roseobacter denitrificans OCh 114 4195283 RD1_2574 tRNA RD1_2574 NC_008209.1 2461587 2461671 D tRNA-Leu 2461587..2461671 Roseobacter denitrificans OCh 114 4195188 RD1_2669 tRNA RD1_2669 NC_008209.1 2544628 2544717 D tRNA-Ser 2544628..2544717 Roseobacter denitrificans OCh 114 4195101 RD1_2688 tRNA RD1_2688 NC_008209.1 2563457 2563533 R tRNA-Arg complement(2563457..2563533) Roseobacter denitrificans OCh 114 4195195 RD1_2717 tRNA RD1_2717 NC_008209.1 2590107 2590180 D tRNA-Gly 2590107..2590180 Roseobacter denitrificans OCh 114 4196183 RD1_2788 tRNA RD1_2788 NC_008209.1 2658080 2658165 R tRNA-Leu complement(2658080..2658165) Roseobacter denitrificans OCh 114 4195927 RD1_2830 tRNA RD1_2830 NC_008209.1 2702190 2702266 R tRNA-Asp complement(2702190..2702266) Roseobacter denitrificans OCh 114 4195287 RD1_2833 tRNA RD1_2833 NC_008209.1 2704565 2704640 R tRNA-Val complement(2704565..2704640) Roseobacter denitrificans OCh 114 4195290 RD1_3068 tRNA RD1_3068 NC_008209.1 2943042 2943131 D tRNA-Ser 2943042..2943131 Roseobacter denitrificans OCh 114 4198732 RD1_3159 tRNA RD1_3159 NC_008209.1 3032080 3032156 D tRNA-Pro 3032080..3032156 Roseobacter denitrificans OCh 114 4198627 RD1_3195 tRNA RD1_3195 NC_008209.1 3062015 3062091 R tRNA-Pro complement(3062015..3062091) Roseobacter denitrificans OCh 114 4198585 RD1_3378 tRNA RD1_3378 NC_008209.1 3246291 3246365 D tRNA-Gly 3246291..3246365 Roseobacter denitrificans OCh 114 4198796 RD1_3440 tRNA RD1_3440 NC_008209.1 3306627 3306701 D tRNA-Gln 3306627..3306701 Roseobacter denitrificans OCh 114 4198856 RD1_3463 tRNA RD1_3463 NC_008209.1 3334175 3334264 R tRNA-Ser complement(3334175..3334264) Roseobacter denitrificans OCh 114 4195642 RD1_3566 tRNA RD1_3566 NC_008209.1 3427558 3427641 D tRNA-OTHER 3427558..3427641 Roseobacter denitrificans OCh 114 4195797 RD1_4010 tRNA RD1_4010 NC_008209.1 3865309 3865384 R tRNA-Trp complement(3865309..3865384) Roseobacter denitrificans OCh 114 4195998 RD1_0727 rRNA rrsA NC_008209.1 703242 704705 D 16S ribosomal RNA 703242..704705 Roseobacter denitrificans OCh 114 4198019 RD1_0730 rRNA rrlA NC_008209.1 705536 708377 D 23S ribosomal RNA 705536..708377 Roseobacter denitrificans OCh 114 4197911 RD1_0731 rRNA rrfA NC_008209.1 708456 708572 D 5S ribosomal RNA 708456..708572 Roseobacter denitrificans OCh 114 4197912