-- dump date 20140620_040934 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_680429.1 110677422 4198060 1723..2871 1 NC_008209.1 glycine cleavage system protein T 2871 4198060 RD1_0003 Roseobacter denitrificans OCh 114 glycine cleavage system protein T YP_680429.1 1723 D 375451 CDS YP_680430.1 110677423 4198467 2948..3556 1 NC_008209.1 hypothetical protein 3556 4198467 RD1_0004 Roseobacter denitrificans OCh 114 hypothetical protein YP_680430.1 2948 D 375451 CDS YP_680431.1 110677424 4198468 3553..4539 1 NC_008209.1 vanillate O-demethylase 4539 vanB 4198468 vanB Roseobacter denitrificans OCh 114 vanillate O-demethylase YP_680431.1 3553 D 375451 CDS YP_680432.1 110677425 4198469 4551..5618 1 NC_008209.1 hypothetical protein 5618 4198469 RD1_0006 Roseobacter denitrificans OCh 114 hypothetical protein YP_680432.1 4551 D 375451 CDS YP_680433.1 110677426 4198470 complement(5659..6306) 1 NC_008209.1 DNA-binding protein 6306 4198470 RD1_0007 Roseobacter denitrificans OCh 114 DNA-binding protein YP_680433.1 5659 R 375451 CDS YP_680434.1 110677427 4198471 6341..7435 1 NC_008209.1 AraC family transcriptional regulator 7435 araC 4198471 araC Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_680434.1 6341 D 375451 CDS YP_680435.1 110677428 4198472 complement(7540..8100) 1 NC_008209.1 sarcosine oxidase, gamma subunit 8100 soxG 4198472 soxG Roseobacter denitrificans OCh 114 sarcosine oxidase, gamma subunit YP_680435.1 7540 R 375451 CDS YP_680436.1 110677429 4198473 complement(8093..11044) 1 NC_008209.1 sarcosine oxidase, alpha subunit 11044 soxA 4198473 soxA Roseobacter denitrificans OCh 114 sarcosine oxidase, alpha subunit YP_680436.1 8093 R 375451 CDS YP_680437.1 110677430 4198474 complement(11041..11328) 1 NC_008209.1 sarcosine oxidase subunit delta 11328 soxD 4198474 soxD Roseobacter denitrificans OCh 114 sarcosine oxidase subunit delta YP_680437.1 11041 R 375451 CDS YP_680438.1 110677431 4198475 complement(11341..12591) 1 NC_008209.1 sarcosine oxidase, beta subunit 12591 soxB 4198475 soxB Roseobacter denitrificans OCh 114 sarcosine oxidase, beta subunit YP_680438.1 11341 R 375451 CDS YP_680439.1 110677432 4198476 12850..13797 1 NC_008209.1 glycine betaine transporter substrate-binding protein 13797 opuAC 4198476 opuAC Roseobacter denitrificans OCh 114 glycine betaine transporter substrate-binding protein YP_680439.1 12850 D 375451 CDS YP_680440.1 110677433 4198477 13879..14913 1 NC_008209.1 glycine betaine transporter ATP-binding protein 14913 opuAA 4198477 opuAA Roseobacter denitrificans OCh 114 glycine betaine transporter ATP-binding protein YP_680440.1 13879 D 375451 CDS YP_680441.1 110677434 4198478 14913..16892 1 NC_008209.1 glycine betaine transporter permease 16892 opuAB 4198478 opuAB Roseobacter denitrificans OCh 114 glycine betaine transporter permease YP_680441.1 14913 D 375451 CDS YP_680442.1 110677435 4198479 complement(16992..17639) 1 NC_008209.1 ribosomal large subunit pseudouridine synthase A 17639 rluA 4198479 rluA Roseobacter denitrificans OCh 114 ribosomal large subunit pseudouridine synthase A YP_680442.1 16992 R 375451 CDS YP_680443.1 110677436 4198480 complement(17670..20117) 1 NC_008209.1 FAD dependent oxidoreductase 20117 4198480 RD1_0017 Roseobacter denitrificans OCh 114 FAD dependent oxidoreductase YP_680443.1 17670 R 375451 CDS YP_680444.1 110677437 4198481 complement(20147..21037) 1 NC_008209.1 homocysteine S-methyltransferase 21037 4198481 RD1_0018 Roseobacter denitrificans OCh 114 homocysteine S-methyltransferase YP_680444.1 20147 R 375451 CDS YP_680445.1 110677438 4198482 complement(21034..23484) 1 NC_008209.1 dimethylglycine dehydrogenase 23484 4198482 RD1_0019 Roseobacter denitrificans OCh 114 dimethylglycine dehydrogenase YP_680445.1 21034 R 375451 CDS YP_680446.1 110677439 4198483 complement(23486..23650) 1 NC_008209.1 hypothetical protein 23650 4198483 RD1_0020 Roseobacter denitrificans OCh 114 hypothetical protein YP_680446.1 23486 R 375451 CDS YP_680447.1 110677440 4198484 complement(23619..24242) 1 NC_008209.1 homoserine/lactone efflux protein 24242 4198484 RD1_0021 Roseobacter denitrificans OCh 114 homoserine/lactone efflux protein YP_680447.1 23619 R 375451 CDS YP_680448.1 110677441 4198485 complement(24239..24811) 1 NC_008209.1 DNA-binding protein 24811 4198485 RD1_0022 Roseobacter denitrificans OCh 114 DNA-binding protein YP_680448.1 24239 R 375451 CDS YP_680449.1 110677442 4198486 24803..24910 1 NC_008209.1 hypothetical protein 24910 4198486 RD1_0023 Roseobacter denitrificans OCh 114 hypothetical protein YP_680449.1 24803 D 375451 CDS YP_680450.1 110677443 4195713 complement(24931..25386) 1 NC_008209.1 hypothetical protein 25386 4195713 RD1_0024 Roseobacter denitrificans OCh 114 hypothetical protein YP_680450.1 24931 R 375451 CDS YP_680451.1 110677444 4195714 complement(25435..26607) 1 NC_008209.1 thiolase domain-containing protein 26607 4195714 RD1_0025 Roseobacter denitrificans OCh 114 thiolase domain-containing protein YP_680451.1 25435 R 375451 CDS YP_680452.1 110677445 4195715 26690..27043 1 NC_008209.1 anti-anti-sigma factor 27043 4195715 RD1_0026 Roseobacter denitrificans OCh 114 anti-anti-sigma factor YP_680452.1 26690 D 375451 CDS YP_680453.1 110677446 4195716 27055..27501 1 NC_008209.1 serine-protein kinase 27501 rsbW 4195716 rsbW Roseobacter denitrificans OCh 114 serine-protein kinase YP_680453.1 27055 D 375451 CDS YP_680454.1 110677447 4195717 27764..29341 1 NC_008209.1 gamma-glutamyltranspeptidase 29341 ggtA 4195717 ggtA Roseobacter denitrificans OCh 114 gamma-glutamyltranspeptidase YP_680454.1 27764 D 375451 CDS YP_680455.1 110677448 4195718 complement(29350..29676) 1 NC_008209.1 hypothetical protein 29676 4195718 RD1_0029 Roseobacter denitrificans OCh 114 hypothetical protein YP_680455.1 29350 R 375451 CDS YP_680456.1 110677449 4195719 29762..30643 1 NC_008209.1 auxin efflux carrier family protein 30643 4195719 RD1_0030 Roseobacter denitrificans OCh 114 auxin efflux carrier family protein YP_680456.1 29762 D 375451 CDS YP_680457.1 110677450 4195720 30714..31298 1 NC_008209.1 lipoprotein 31298 4195720 RD1_0031 Roseobacter denitrificans OCh 114 lipoprotein YP_680457.1 30714 D 375451 CDS YP_680458.1 110677451 4195721 complement(31304..31864) 1 NC_008209.1 outer membrane lipoprotein carrier protein 31864 lolA 4195721 lolA Roseobacter denitrificans OCh 114 outer membrane lipoprotein carrier protein YP_680458.1 31304 R 375451 CDS YP_680459.1 110677452 4195722 complement(32002..34818) 1 NC_008209.1 cell division protein FtsK 34818 ftsK 4195722 ftsK Roseobacter denitrificans OCh 114 cell division protein FtsK YP_680459.1 32002 R 375451 CDS YP_680460.1 110677453 4195723 complement(34824..36002) 1 NC_008209.1 aminotransferase 36002 4195723 RD1_0034 Roseobacter denitrificans OCh 114 aminotransferase YP_680460.1 34824 R 375451 CDS YP_680461.1 110677454 4195724 complement(36111..37439) 1 NC_008209.1 amidase 37439 4195724 RD1_0035 Roseobacter denitrificans OCh 114 amidase YP_680461.1 36111 R 375451 CDS YP_680462.1 110677455 4195725 37491..38753 1 NC_008209.1 2-octaprenyl-6-methoxyphenol hydroxylase 38753 ubiH 4195725 ubiH Roseobacter denitrificans OCh 114 2-octaprenyl-6-methoxyphenol hydroxylase YP_680462.1 37491 D 375451 CDS YP_680463.1 110677456 4195726 complement(38853..39038) 1 NC_008209.1 hypothetical protein 39038 4195726 RD1_0037 Roseobacter denitrificans OCh 114 hypothetical protein YP_680463.1 38853 R 375451 CDS YP_680464.1 110677457 4195727 complement(39035..39679) 1 NC_008209.1 ATP-dependent protease La 39679 lonD 4195727 lonD Roseobacter denitrificans OCh 114 ATP-dependent protease La YP_680464.1 39035 R 375451 CDS YP_680465.1 110677458 4195728 complement(39707..40624) 1 NC_008209.1 thioredoxin 40624 trx 4195728 trx Roseobacter denitrificans OCh 114 thioredoxin YP_680465.1 39707 R 375451 CDS YP_680466.1 110677459 4195729 complement(40679..41467) 1 NC_008209.1 exodeoxyribonuclease III 41467 xth 4195729 xth Roseobacter denitrificans OCh 114 exodeoxyribonuclease III YP_680466.1 40679 R 375451 CDS YP_680467.1 110677460 4195730 complement(41728..42414) 1 NC_008209.1 DNA-binding response regulator 42414 mtrA 4195730 mtrA Roseobacter denitrificans OCh 114 DNA-binding response regulator YP_680467.1 41728 R 375451 CDS YP_680468.1 110677461 4195731 42577..43665 1 NC_008209.1 GTP cyclohydrolase II 43665 ribA 4195731 ribA Roseobacter denitrificans OCh 114 GTP cyclohydrolase II YP_680468.1 42577 D 375451 CDS YP_680469.1 110677462 4198487 43662..44156 1 NC_008209.1 hypothetical protein 44156 4198487 RD1_0044 Roseobacter denitrificans OCh 114 hypothetical protein YP_680469.1 43662 D 375451 CDS YP_680470.1 110677463 4198488 complement(44164..44820) 1 NC_008209.1 hypothetical protein 44820 4198488 RD1_0046 Roseobacter denitrificans OCh 114 hypothetical protein YP_680470.1 44164 R 375451 CDS YP_680471.1 110677464 4198489 complement(44919..45881) 1 NC_008209.1 outer membrane porin 45881 4198489 RD1_0047 Roseobacter denitrificans OCh 114 outer membrane porin YP_680471.1 44919 R 375451 CDS YP_680472.1 110677465 4198490 46129..46620 1 NC_008209.1 hypothetical protein 46620 4198490 RD1_0048 Roseobacter denitrificans OCh 114 hypothetical protein YP_680472.1 46129 D 375451 CDS YP_680473.1 110677466 4198491 46734..49280 1 NC_008209.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 49280 leuS 4198491 leuS Roseobacter denitrificans OCh 114 leucyl-tRNA synthetase YP_680473.1 46734 D 375451 CDS YP_680474.1 110677467 4198492 49267..49746 1 NC_008209.1 lipoprotein 49746 4198492 RD1_0050 Roseobacter denitrificans OCh 114 lipoprotein YP_680474.1 49267 D 375451 CDS YP_680475.1 110677468 4198493 49743..50744 1 NC_008209.1 hypothetical protein 50744 4198493 RD1_0052 Roseobacter denitrificans OCh 114 hypothetical protein YP_680475.1 49743 D 375451 CDS YP_680476.1 110677469 4198494 50763..51347 1 NC_008209.1 glutathione S-transferase family protein 51347 4198494 RD1_0053 Roseobacter denitrificans OCh 114 glutathione S-transferase family protein YP_680476.1 50763 D 375451 CDS YP_680477.1 110677470 4198495 complement(51326..52510) 1 NC_008209.1 hypothetical protein 52510 4198495 RD1_0054 Roseobacter denitrificans OCh 114 hypothetical protein YP_680477.1 51326 R 375451 CDS YP_680478.1 110677471 4198496 complement(52507..53841) 1 NC_008209.1 mechanosensitive ion channel family protein 53841 4198496 RD1_0055 Roseobacter denitrificans OCh 114 mechanosensitive ion channel family protein YP_680478.1 52507 R 375451 CDS YP_680479.1 110677472 4198497 complement(53945..55948) 1 NC_008209.1 hydantoinase/oxoprolinase 55948 4198497 RD1_0056 Roseobacter denitrificans OCh 114 hydantoinase/oxoprolinase YP_680479.1 53945 R 375451 CDS YP_680480.1 110677473 4198498 complement(56013..57056) 1 NC_008209.1 4Fe-4S ferredoxin 57056 4198498 RD1_0057 Roseobacter denitrificans OCh 114 4Fe-4S ferredoxin YP_680480.1 56013 R 375451 CDS YP_680481.1 110677474 4198499 complement(57069..57734) 1 NC_008209.1 glutathione S-transferase domain-containing protein 57734 4198499 RD1_0058 Roseobacter denitrificans OCh 114 glutathione S-transferase domain-containing protein YP_680481.1 57069 R 375451 CDS YP_680482.1 110677475 4198500 complement(57790..58455) 1 NC_008209.1 monofunctional biosynthetic peptidoglycan transglycosylase 58455 mtgA 4198500 mtgA Roseobacter denitrificans OCh 114 monofunctional biosynthetic peptidoglycan transglycosylase YP_680482.1 57790 R 375451 CDS YP_680483.1 110677476 4198501 complement(58565..63094) 1 NC_008209.1 glutamate synthase, large subunit 63094 gltB 4198501 gltB Roseobacter denitrificans OCh 114 glutamate synthase, large subunit YP_680483.1 58565 R 375451 CDS YP_680484.1 110677477 4198502 complement(63091..63525) 1 NC_008209.1 hypothetical protein 63525 4198502 RD1_0061 Roseobacter denitrificans OCh 114 hypothetical protein YP_680484.1 63091 R 375451 CDS YP_680485.1 110677478 4198503 complement(63522..63956) 1 NC_008209.1 hypothetical protein 63956 4198503 RD1_0062 Roseobacter denitrificans OCh 114 hypothetical protein YP_680485.1 63522 R 375451 CDS YP_680486.1 110677479 4198504 complement(64087..65520) 1 NC_008209.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 65520 gltD 4198504 gltD Roseobacter denitrificans OCh 114 oxidoreductase YP_680486.1 64087 R 375451 CDS YP_680487.1 110677480 4198505 65746..66549 1 NC_008209.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 66549 uppP 4198505 uppP Roseobacter denitrificans OCh 114 UDP pyrophosphate phosphatase YP_680487.1 65746 D 375451 CDS YP_680488.1 110677481 4198506 complement(66546..67529) 1 NC_008209.1 NADH-ubiquinone oxidoreductase 67529 4198506 RD1_0065 Roseobacter denitrificans OCh 114 NADH-ubiquinone oxidoreductase YP_680488.1 66546 R 375451 CDS YP_680489.1 110677482 4198313 complement(68288..69538) 1 NC_008209.1 sulfatase 69538 4198313 RD1_0067 Roseobacter denitrificans OCh 114 sulfatase YP_680489.1 68288 R 375451 CDS YP_680490.1 110677483 4198314 complement(69950..70813) 1 NC_008209.1 hypothetical protein 70813 4198314 RD1_0068 Roseobacter denitrificans OCh 114 hypothetical protein YP_680490.1 69950 R 375451 CDS YP_680491.1 110677484 4198315 complement(70868..72958) 1 NC_008209.1 mechanosensitive ion channel protein 72958 4198315 RD1_0069 Roseobacter denitrificans OCh 114 mechanosensitive ion channel protein YP_680491.1 70868 R 375451 CDS YP_680492.1 110677485 4198316 73014..73127 1 NC_008209.1 hypothetical protein 73127 4198316 RD1_0070 Roseobacter denitrificans OCh 114 hypothetical protein YP_680492.1 73014 D 375451 CDS YP_680493.1 110677486 4198317 complement(73785..74429) 1 NC_008209.1 hypothetical protein 74429 4198317 RD1_0071 Roseobacter denitrificans OCh 114 hypothetical protein YP_680493.1 73785 R 375451 CDS YP_680494.1 110677487 4198318 complement(74433..75839) 1 NC_008209.1 4Fe-4S ferredoxin 75839 4198318 RD1_0072 Roseobacter denitrificans OCh 114 4Fe-4S ferredoxin YP_680494.1 74433 R 375451 CDS YP_680495.1 110677488 4198319 complement(75850..76620) 1 NC_008209.1 hypothetical protein 76620 4198319 RD1_0073 Roseobacter denitrificans OCh 114 hypothetical protein YP_680495.1 75850 R 375451 CDS YP_680496.1 110677489 4198320 complement(76746..78467) 1 NC_008209.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 78467 dld 4198320 dld Roseobacter denitrificans OCh 114 D-lactate dehydrogenase YP_680496.1 76746 R 375451 CDS YP_680497.1 110677490 4198321 78658..79296 1 NC_008209.1 paraquat-inducible protein A 79296 4198321 RD1_0075 Roseobacter denitrificans OCh 114 paraquat-inducible protein A YP_680497.1 78658 D 375451 CDS YP_680498.1 110677491 4198322 79254..79913 1 NC_008209.1 paraquat-inducible protein A 79913 4198322 RD1_0076 Roseobacter denitrificans OCh 114 paraquat-inducible protein A YP_680498.1 79254 D 375451 CDS YP_680499.1 110677492 4198323 79906..81987 1 NC_008209.1 paraquat-inducible protein B 81987 pqiB 4198323 pqiB Roseobacter denitrificans OCh 114 paraquat-inducible protein B YP_680499.1 79906 D 375451 CDS YP_680500.1 110677493 4198324 81988..82548 1 NC_008209.1 lipoprotein 82548 4198324 RD1_0078 Roseobacter denitrificans OCh 114 lipoprotein YP_680500.1 81988 D 375451 CDS YP_680501.1 110677494 4198325 complement(82648..83775) 1 NC_008209.1 aminotransferase 83775 4198325 RD1_0079 Roseobacter denitrificans OCh 114 aminotransferase YP_680501.1 82648 R 375451 CDS YP_680502.1 110677495 4198326 83827..84579 1 NC_008209.1 hypothetical protein 84579 4198326 RD1_0080 Roseobacter denitrificans OCh 114 hypothetical protein YP_680502.1 83827 D 375451 CDS YP_680503.1 110677496 4198327 complement(84576..84767) 1 NC_008209.1 hypothetical protein 84767 4198327 RD1_0081 Roseobacter denitrificans OCh 114 hypothetical protein YP_680503.1 84576 R 375451 CDS YP_680504.1 110677497 4198328 complement(84780..84938) 1 NC_008209.1 hypothetical protein 84938 4198328 RD1_0082 Roseobacter denitrificans OCh 114 hypothetical protein YP_680504.1 84780 R 375451 CDS YP_680505.1 110677498 4198329 84933..86558 1 NC_008209.1 glutamate synthase 86558 4198329 RD1_0083 Roseobacter denitrificans OCh 114 glutamate synthase YP_680505.1 84933 D 375451 CDS YP_680506.1 110677499 4198099 complement(86744..88468) 1 NC_008209.1 sensor histidine kinase 88468 4198099 RD1_0084 Roseobacter denitrificans OCh 114 sensor histidine kinase YP_680506.1 86744 R 375451 CDS YP_680507.1 110677500 4198100 complement(88470..89027) 1 NC_008209.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 89027 4198100 RD1_0085 Roseobacter denitrificans OCh 114 RNA polymerase sigma factor YP_680507.1 88470 R 375451 CDS YP_680508.1 110677501 4198101 complement(89024..89191) 1 NC_008209.1 hypothetical protein 89191 4198101 RD1_0086 Roseobacter denitrificans OCh 114 hypothetical protein YP_680508.1 89024 R 375451 CDS YP_680509.1 110677502 4198102 89289..90098 1 NC_008209.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 90098 tcrX 4198102 tcrX Roseobacter denitrificans OCh 114 two-component response regulator YP_680509.1 89289 D 375451 CDS YP_680510.1 110677503 4198103 complement(90109..91029) 1 NC_008209.1 ribonuclease BN 91029 4198103 RD1_0088 Roseobacter denitrificans OCh 114 ribonuclease BN YP_680510.1 90109 R 375451 CDS YP_680511.1 110677504 4198104 91266..92525 1 NC_008209.1 aminotransferase 92525 4198104 RD1_0089 Roseobacter denitrificans OCh 114 aminotransferase YP_680511.1 91266 D 375451 CDS YP_680512.1 110677505 4198105 92563..93852 1 NC_008209.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 93852 dapE 4198105 dapE Roseobacter denitrificans OCh 114 succinyl-diaminopimelate desuccinylase YP_680512.1 92563 D 375451 CDS YP_680513.1 110677506 4198106 complement(93937..94791) 1 NC_008209.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 94791 panC 4198106 panC Roseobacter denitrificans OCh 114 pantoate--beta-alanine ligase YP_680513.1 93937 R 375451 CDS YP_680514.1 110677507 4198107 complement(94788..95627) 1 NC_008209.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 95627 panB 4198107 panB Roseobacter denitrificans OCh 114 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_680514.1 94788 R 375451 CDS YP_680515.1 110677508 4198108 95873..96634 1 NC_008209.1 hypothetical protein 96634 4198108 RD1_0094 Roseobacter denitrificans OCh 114 hypothetical protein YP_680515.1 95873 D 375451 CDS YP_680516.1 110677509 4198109 96769..97056 1 NC_008209.1 hypothetical protein 97056 4198109 RD1_0095 Roseobacter denitrificans OCh 114 hypothetical protein YP_680516.1 96769 D 375451 CDS YP_680517.1 110677510 4198110 complement(97134..98264) 1 NC_008209.1 acetoin utilization protein 98264 4198110 RD1_0096 Roseobacter denitrificans OCh 114 acetoin utilization protein YP_680517.1 97134 R 375451 CDS YP_680518.1 110677511 4198111 98445..98945 1 NC_008209.1 GNAT family acetyltransferase 98945 4198111 RD1_0097 Roseobacter denitrificans OCh 114 GNAT family acetyltransferase YP_680518.1 98445 D 375451 CDS YP_680519.1 110677512 4198112 98961..99707 1 NC_008209.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 99707 fabG 4198112 fabG Roseobacter denitrificans OCh 114 3-ketoacyl-ACP reductase YP_680519.1 98961 D 375451 CDS YP_680520.1 110677513 4198113 99704..100054 1 NC_008209.1 hypothetical protein 100054 4198113 RD1_0099 Roseobacter denitrificans OCh 114 hypothetical protein YP_680520.1 99704 D 375451 CDS YP_680521.1 110677514 4198114 100056..101048 1 NC_008209.1 T4 family peptidase 101048 4198114 RD1_0100 Roseobacter denitrificans OCh 114 T4 family peptidase YP_680521.1 100056 D 375451 CDS YP_680522.1 110677515 4198115 complement(101045..102982) 1 NC_008209.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 102982 dxs 4198115 dxs Roseobacter denitrificans OCh 114 1-deoxy-D-xylulose-5-phosphate synthase YP_680522.1 101045 R 375451 CDS YP_680523.1 110677516 4198116 complement(103204..104319) 1 NC_008209.1 photosynthetic reaction center cytochrome c subunit 104319 pufC 4198116 pufC Roseobacter denitrificans OCh 114 photosynthetic reaction center cytochrome c subunit YP_680523.1 103204 R 375451 CDS YP_680524.1 110677517 4198117 complement(104322..105317) 1 NC_008209.1 photosynthetic reaction center subunit M 105317 pufM 4198117 pufM Roseobacter denitrificans OCh 114 photosynthetic reaction center subunit M YP_680524.1 104322 R 375451 CDS YP_680525.1 110677518 4198118 complement(105319..106170) 1 NC_008209.1 photosynthetic reaction center subunit L 106170 pufL 4198118 pufL Roseobacter denitrificans OCh 114 photosynthetic reaction center subunit L YP_680525.1 105319 R 375451 CDS YP_680526.1 110677519 4198507 106185..106316 1 NC_008209.1 hypothetical protein 106316 4198507 RD1_0105 Roseobacter denitrificans OCh 114 hypothetical protein YP_680526.1 106185 D 375451 CDS YP_680527.1 110677520 4198508 complement(106396..106554) 1 NC_008209.1 light-harvesting protein B-875, alpha chain 106554 pufA 4198508 pufA Roseobacter denitrificans OCh 114 light-harvesting protein B-875, alpha chain YP_680527.1 106396 R 375451 CDS YP_680528.1 110677521 4198509 complement(106567..106719) 1 NC_008209.1 light-harvesting protein B-875, beta chain 106719 pufB 4198509 pufB Roseobacter denitrificans OCh 114 light-harvesting protein B-875, beta chain YP_680528.1 106567 R 375451 CDS YP_680529.1 110677522 4198510 complement(106901..107134) 1 NC_008209.1 protein pufQ 107134 pufQ 4198510 pufQ Roseobacter denitrificans OCh 114 protein pufQ YP_680529.1 106901 R 375451 CDS YP_680530.1 110677523 4198511 complement(107152..108627) 1 NC_008209.1 chlorophyllide reductase subunit Z 108627 bchZ 4198511 bchZ Roseobacter denitrificans OCh 114 chlorophyllide reductase subunit Z YP_680530.1 107152 R 375451 CDS YP_680531.1 110677524 4198512 complement(108716..110245) 1 NC_008209.1 chlorophyllide reductase subunit Y 110245 bchY 4198512 bchY Roseobacter denitrificans OCh 114 chlorophyllide reductase subunit Y YP_680531.1 108716 R 375451 CDS YP_680532.1 110677525 4198513 complement(110444..111448) 1 NC_008209.1 chlorophyllide reductase subunit X 111448 bchX 4198513 bchX Roseobacter denitrificans OCh 114 chlorophyllide reductase subunit X YP_680532.1 110444 R 375451 CDS YP_680533.1 110677526 4198514 complement(111445..112386) 1 NC_008209.1 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase 112386 bchC 4198514 bchC Roseobacter denitrificans OCh 114 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_680533.1 111445 R 375451 CDS YP_680534.1 110677527 4198515 complement(112514..113620) 1 NC_008209.1 hydroxyneurosporene methyltransferase 113620 crtF 4198515 crtF Roseobacter denitrificans OCh 114 hydroxyneurosporene methyltransferase YP_680534.1 112514 R 375451 CDS YP_680535.1 110677528 4198516 complement(113634..114518) 1 NC_008209.1 geranylgeranyl pyrophosphate synthetase 114518 crtE 4198516 crtE Roseobacter denitrificans OCh 114 geranylgeranyl pyrophosphate synthetase YP_680535.1 113634 R 375451 CDS YP_680536.1 110677529 4198517 114612..116162 1 NC_008209.1 methoxyneurosporene dehydrogenase 116162 crtD 4198517 crtD Roseobacter denitrificans OCh 114 methoxyneurosporene dehydrogenase YP_680536.1 114612 D 375451 CDS YP_680537.1 110677530 4198518 116012..117031 1 NC_008209.1 hydroxyneurosporene dehydrogenase 117031 crtC 4198518 crtC Roseobacter denitrificans OCh 114 hydroxyneurosporene dehydrogenase YP_680537.1 116012 D 375451 CDS YP_680538.1 110677531 4198519 117165..117887 1 NC_008209.1 hypothetical protein 117887 4198519 RD1_0117 Roseobacter denitrificans OCh 114 hypothetical protein YP_680538.1 117165 D 375451 CDS YP_680539.1 110677532 4198520 complement(117907..118389) 1 NC_008209.1 CrtK protein 118389 crtK 4198520 crtK Roseobacter denitrificans OCh 114 CrtK protein YP_680539.1 117907 R 375451 CDS YP_680540.1 110677533 4198521 complement(118413..119432) 1 NC_008209.1 phytoene synthase 119432 crtB 4198521 crtB Roseobacter denitrificans OCh 114 phytoene synthase YP_680540.1 118413 R 375451 CDS YP_680541.1 110677534 4198522 complement(119429..120976) 1 NC_008209.1 phytoene dehydrogenase 120976 ctrI 4198522 ctrI Roseobacter denitrificans OCh 114 phytoene dehydrogenase YP_680541.1 119429 R 375451 CDS YP_680542.1 110677535 4198523 121082..121798 1 NC_008209.1 spheroidene monooxygenase 121798 crtA 4198523 crtA Roseobacter denitrificans OCh 114 spheroidene monooxygenase YP_680542.1 121082 D 375451 CDS YP_680543.1 110677536 4198524 121795..122799 1 NC_008209.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit I 122799 bchI 4198524 bchI Roseobacter denitrificans OCh 114 magnesium chelatase subunit I YP_680543.1 121795 D 375451 CDS YP_680544.1 110677537 4198525 122796..124454 1 NC_008209.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 124454 bchD 4198525 bchD Roseobacter denitrificans OCh 114 magnesium chelatase subunit D YP_680544.1 122796 D 375451 CDS YP_680545.1 110677538 4198388 124455..125327 1 NC_008209.1 magnesium-chelatase 30 kDa subunit 125327 bchO 4198388 bchO Roseobacter denitrificans OCh 114 magnesium-chelatase 30 kDa subunit YP_680545.1 124455 D 375451 CDS YP_680546.1 110677539 4198389 complement(125483..125716) 1 NC_008209.1 hypothetical protein 125716 4198389 RD1_0125 Roseobacter denitrificans OCh 114 hypothetical protein YP_680546.1 125483 R 375451 CDS YP_680547.1 110677540 4198390 complement(125920..126339) 1 NC_008209.1 cytochrome c-551 126339 cycA 4198390 cycA Roseobacter denitrificans OCh 114 cytochrome c-551 YP_680547.1 125920 R 375451 CDS YP_680548.1 110677541 4198391 complement(126413..127627) 1 NC_008209.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 127627 hemA 4198391 hemA Roseobacter denitrificans OCh 114 5-aminolevulinate synthase YP_680548.1 126413 R 375451 CDS YP_680549.1 110677542 4198392 complement(127617..128438) 1 NC_008209.1 PuhE protein 128438 puhE 4198392 puhE Roseobacter denitrificans OCh 114 PuhE protein YP_680549.1 127617 R 375451 CDS YP_680550.1 110677543 4198393 complement(128440..129477) 1 NC_008209.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 129477 acsF 4198393 acsF Roseobacter denitrificans OCh 114 magnesium-protoporphyrin IX monomethyl ester cyclase YP_680550.1 128440 R 375451 CDS YP_680551.1 110677544 4198394 complement(129552..129848) 1 NC_008209.1 hypothetical protein 129848 4198394 RD1_0130 Roseobacter denitrificans OCh 114 hypothetical protein YP_680551.1 129552 R 375451 CDS YP_680552.1 110677545 4198395 complement(129869..130336) 1 NC_008209.1 PuhC protein 130336 puhC 4198395 puhC Roseobacter denitrificans OCh 114 PuhC protein YP_680552.1 129869 R 375451 CDS YP_680553.1 110677546 4198396 complement(130342..130980) 1 NC_008209.1 photosynthetic complex assembly protein 130980 puhB 4198396 puhB Roseobacter denitrificans OCh 114 photosynthetic complex assembly protein YP_680553.1 130342 R 375451 CDS YP_680554.1 110677547 4198397 complement(131068..131835) 1 NC_008209.1 photosynthetic reaction center subunit H 131835 puhA 4198397 puhA Roseobacter denitrificans OCh 114 photosynthetic reaction center subunit H YP_680554.1 131068 R 375451 CDS YP_680555.1 110677548 4198398 complement(131858..133291) 1 NC_008209.1 LhaA protein 133291 lhaA 4198398 lhaA Roseobacter denitrificans OCh 114 LhaA protein YP_680555.1 131858 R 375451 CDS YP_680556.1 110677549 4198399 complement(133288..134016) 1 NC_008209.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 134016 bchM 4198399 bchM Roseobacter denitrificans OCh 114 Mg-protoporphyrin IX methyl transferase YP_680556.1 133288 R 375451 CDS YP_680557.1 110677550 4198400 complement(134016..134915) 1 NC_008209.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 134915 chlL 4198400 chlL Roseobacter denitrificans OCh 114 protochlorophyllide reductase iron-sulfur ATP-binding protein YP_680557.1 134016 R 375451 CDS YP_680558.1 110677551 4198401 complement(134968..138540) 1 NC_008209.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H 138540 bchH 4198401 bchH Roseobacter denitrificans OCh 114 magnesium chelatase subunit H YP_680558.1 134968 R 375451 CDS YP_680559.1 110677552 4198402 complement(138530..140071) 1 NC_008209.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 140071 bchB 4198402 bchB Roseobacter denitrificans OCh 114 light-independent protochlorophyllide reductase subunit B YP_680559.1 138530 R 375451 CDS YP_680560.1 110677553 4198403 complement(140068..141354) 1 NC_008209.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 141354 bchN 4198403 bchN Roseobacter denitrificans OCh 114 light-independent protochlorophyllide reductase subunit N YP_680560.1 140068 R 375451 CDS YP_680561.1 110677554 4198404 complement(141351..141875) 1 NC_008209.1 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 141875 bchF 4198404 bchF Roseobacter denitrificans OCh 114 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD YP_680561.1 141351 R 375451 CDS YP_680562.1 110677555 4198405 142189..142971 1 NC_008209.1 regulatory protein Ppa 142971 ppa 4198405 ppa Roseobacter denitrificans OCh 114 regulatory protein Ppa YP_680562.1 142189 D 375451 CDS YP_680563.1 110677556 4198406 142968..144395 1 NC_008209.1 transcriptional regulator PpsR 144395 ppsR 4198406 ppsR Roseobacter denitrificans OCh 114 transcriptional regulator PpsR YP_680563.1 142968 D 375451 CDS YP_680564.1 110677557 4198407 144450..145349 1 NC_008209.1 bacteriochlorophyll/chlorophyll a synthase 145349 bchG 4198407 bchG Roseobacter denitrificans OCh 114 bacteriochlorophyll/chlorophyll a synthase YP_680564.1 144450 D 375451 CDS YP_680565.1 110677558 4198197 145349..146647 1 NC_008209.1 PucC family protein 146647 4198197 RD1_0145 Roseobacter denitrificans OCh 114 PucC family protein YP_680565.1 145349 D 375451 CDS YP_680566.1 110677559 4198198 146652..147830 1 NC_008209.1 geranylgeranyl hydrogenase 147830 bchP 4198198 bchP Roseobacter denitrificans OCh 114 geranylgeranyl hydrogenase YP_680566.1 146652 D 375451 CDS YP_680567.1 110677560 4198199 147827..148357 1 NC_008209.1 isopentyl-diphosphate delta-isomerase 148357 idi 4198199 idi Roseobacter denitrificans OCh 114 isopentyl-diphosphate delta-isomerase YP_680567.1 147827 D 375451 CDS YP_680568.1 110677561 4198200 148820..149530 1 NC_008209.1 transglycosylase 149530 4198200 RD1_0148 Roseobacter denitrificans OCh 114 transglycosylase YP_680568.1 148820 D 375451 CDS YP_680569.1 110677562 4198201 149533..151617 1 NC_008209.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 151617 flhA 4198201 flhA Roseobacter denitrificans OCh 114 flagellar biosynthesis protein FlhA YP_680569.1 149533 D 375451 CDS YP_680570.1 110677563 4198202 151614..152384 1 NC_008209.1 flagellar biosynthetic protein FliR 152384 fliR 4198202 fliR Roseobacter denitrificans OCh 114 flagellar biosynthetic protein FliR YP_680570.1 151614 D 375451 CDS YP_680571.1 110677564 4198203 152381..153469 1 NC_008209.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 153469 flhB 4198203 flhB Roseobacter denitrificans OCh 114 flagellar biosynthesis protein FlhB YP_680571.1 152381 D 375451 CDS YP_680572.1 110677565 4198204 153466..153861 1 NC_008209.1 hypothetical protein 153861 4198204 RD1_0153 Roseobacter denitrificans OCh 114 hypothetical protein YP_680572.1 153466 D 375451 CDS YP_680573.1 110677566 4198205 complement(154208..154609) 1 NC_008209.1 integrase catalytic subunit 154609 4198205 RD1_0154 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_680573.1 154208 R 375451 CDS YP_680574.1 110677567 4198206 complement(155014..155277) 1 NC_008209.1 hypothetical protein 155277 4198206 RD1_0155 Roseobacter denitrificans OCh 114 hypothetical protein YP_680574.1 155014 R 375451 CDS YP_680575.1 110677568 4198207 complement(155374..156426) 1 NC_008209.1 hypothetical protein 156426 4198207 RD1_0156 Roseobacter denitrificans OCh 114 hypothetical protein YP_680575.1 155374 R 375451 CDS YP_680576.1 110677569 4198208 156373..156639 1 NC_008209.1 hypothetical protein 156639 4198208 RD1_0157 Roseobacter denitrificans OCh 114 hypothetical protein YP_680576.1 156373 D 375451 CDS YP_680577.2 162139376 4198209 156675..157487 1 NC_008209.1 integrase catalytic subunit 157487 4198209 RD1_0158 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_680577.2 156675 D 375451 CDS YP_680578.1 110677571 4198210 complement(159558..159929) 1 NC_008209.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF 159929 flaF 4198210 flaF Roseobacter denitrificans OCh 114 flagellar biosynthesis regulatory protein FlaF YP_680578.1 159558 R 375451 CDS YP_680579.1 110677572 4198211 complement(160000..161250) 1 NC_008209.1 hypothetical protein 161250 4198211 RD1_0160 Roseobacter denitrificans OCh 114 hypothetical protein YP_680579.1 160000 R 375451 CDS YP_680580.1 110677573 4198212 complement(161459..161818) 1 NC_008209.1 hypothetical protein 161818 4198212 RD1_0161 Roseobacter denitrificans OCh 114 hypothetical protein YP_680580.1 161459 R 375451 CDS YP_680581.1 110677574 4198213 complement(161811..162113) 1 NC_008209.1 chemotactic signal-response protein 162113 cheL 4198213 cheL Roseobacter denitrificans OCh 114 chemotactic signal-response protein YP_680581.1 161811 R 375451 CDS YP_680582.1 110677575 4198214 162209..163546 1 NC_008209.1 flagellar hook-length control protein 163546 4198214 RD1_0163 Roseobacter denitrificans OCh 114 flagellar hook-length control protein YP_680582.1 162209 D 375451 CDS YP_680583.1 110677576 4198215 163556..164236 1 NC_008209.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of many flagellar genes; the Rhodobacter protein in this cluster is associated with a set of flagellar genes acquired by lateral gene transfer; these genes are not normally expressed; flagellar basal body rod modification protein 164236 flgD 4198215 flgD Roseobacter denitrificans OCh 114 flagellar basal body rod modification protein YP_680583.1 163556 D 375451 CDS YP_680584.1 110677577 4197924 complement(164233..165567) 1 NC_008209.1 oxidoreductase 165567 4197924 RD1_0165 Roseobacter denitrificans OCh 114 oxidoreductase YP_680584.1 164233 R 375451 CDS YP_680585.1 110677578 4197925 complement(165567..166385) 1 NC_008209.1 putrescine ABC transporter permease 166385 potI 4197925 potI Roseobacter denitrificans OCh 114 putrescine ABC transporter permease YP_680585.1 165567 R 375451 CDS YP_680586.1 110677579 4197926 complement(166382..167257) 1 NC_008209.1 putrescine ABC transporter permease 167257 potH 4197926 potH Roseobacter denitrificans OCh 114 putrescine ABC transporter permease YP_680586.1 166382 R 375451 CDS YP_680587.1 110677580 4197927 complement(167295..168422) 1 NC_008209.1 putrescine ABC transporter ATP-binding protein 168422 potG 4197927 potG Roseobacter denitrificans OCh 114 putrescine ABC transporter ATP-binding protein YP_680587.1 167295 R 375451 CDS YP_680588.1 110677581 4197928 complement(168502..169584) 1 NC_008209.1 putrescine ABC transporter substrate-binding protein 169584 potF 4197928 potF Roseobacter denitrificans OCh 114 putrescine ABC transporter substrate-binding protein YP_680588.1 168502 R 375451 CDS YP_680589.1 110677582 4197929 169773..170432 1 NC_008209.1 transcriptional regulator 170432 4197929 RD1_0171 Roseobacter denitrificans OCh 114 transcriptional regulator YP_680589.1 169773 D 375451 CDS YP_680590.1 110677583 4197930 170510..171907 1 NC_008209.1 aminotransferase 171907 4197930 RD1_0172 Roseobacter denitrificans OCh 114 aminotransferase YP_680590.1 170510 D 375451 CDS YP_680591.1 110677584 4197931 172145..173260 1 NC_008209.1 polyamine ABC transporter ATP-binding protein 173260 4197931 RD1_0173 Roseobacter denitrificans OCh 114 polyamine ABC transporter ATP-binding protein YP_680591.1 172145 D 375451 CDS YP_680592.1 110677585 4197932 173380..174486 1 NC_008209.1 ABC transporter substrate-binding protein 174486 4197932 RD1_0175 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_680592.1 173380 D 375451 CDS YP_680593.1 110677586 4197933 174559..174846 1 NC_008209.1 hypothetical protein 174846 4197933 RD1_0178 Roseobacter denitrificans OCh 114 hypothetical protein YP_680593.1 174559 D 375451 CDS YP_680594.1 110677587 4197934 174850..176490 1 NC_008209.1 ABC transporter permease 176490 4197934 RD1_0179 Roseobacter denitrificans OCh 114 ABC transporter permease YP_680594.1 174850 D 375451 CDS YP_680595.1 110677588 4197935 176830..177672 1 NC_008209.1 ABC transporter permease 177672 4197935 RD1_0180 Roseobacter denitrificans OCh 114 ABC transporter permease YP_680595.1 176830 D 375451 CDS YP_680596.1 110677589 4197936 complement(177764..179119) 1 NC_008209.1 transglycosylase 179119 4197936 RD1_0181 Roseobacter denitrificans OCh 114 transglycosylase YP_680596.1 177764 R 375451 CDS YP_680597.1 110677590 4197937 179316..180008 1 NC_008209.1 hypothetical protein 180008 4197937 RD1_0182 Roseobacter denitrificans OCh 114 hypothetical protein YP_680597.1 179316 D 375451 CDS YP_680598.1 110677591 4197938 complement(180005..182260) 1 NC_008209.1 ribonuclease R 182260 rnr 4197938 rnr Roseobacter denitrificans OCh 114 ribonuclease R YP_680598.1 180005 R 375451 CDS YP_680599.1 110677592 4197939 complement(182266..182865) 1 NC_008209.1 hypothetical protein 182865 4197939 RD1_0184 Roseobacter denitrificans OCh 114 hypothetical protein YP_680599.1 182266 R 375451 CDS YP_680600.1 110677593 4197940 complement(182862..184007) 1 NC_008209.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 184007 dapE 4197940 dapE Roseobacter denitrificans OCh 114 succinyl-diaminopimelate desuccinylase YP_680600.1 182862 R 375451 CDS YP_680601.1 110677594 4197941 complement(184075..184428) 1 NC_008209.1 hypothetical protein 184428 4197941 RD1_0186 Roseobacter denitrificans OCh 114 hypothetical protein YP_680601.1 184075 R 375451 CDS YP_680602.1 110677595 4197942 complement(184438..185316) 1 NC_008209.1 hypothetical protein 185316 4197942 RD1_0187 Roseobacter denitrificans OCh 114 hypothetical protein YP_680602.1 184438 R 375451 CDS YP_680603.1 110677596 4197943 185318..185413 1 NC_008209.1 hypothetical protein 185413 4197943 RD1_0188 Roseobacter denitrificans OCh 114 hypothetical protein YP_680603.1 185318 D 375451 CDS YP_680604.1 110677597 4198178 complement(185454..186281) 1 NC_008209.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 186281 dapD 4198178 dapD Roseobacter denitrificans OCh 114 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_680604.1 185454 R 375451 CDS YP_680605.1 110677598 4198179 186453..187289 1 NC_008209.1 hypothetical protein 187289 4198179 RD1_0190 Roseobacter denitrificans OCh 114 hypothetical protein YP_680605.1 186453 D 375451 CDS YP_680606.1 110677599 4198180 complement(187382..188122) 1 NC_008209.1 protein-disulfide isomerase 188122 4198180 RD1_0191 Roseobacter denitrificans OCh 114 protein-disulfide isomerase YP_680606.1 187382 R 375451 CDS YP_680607.1 110677600 4198181 complement(188122..189306) 1 NC_008209.1 hypothetical protein 189306 4198181 RD1_0192 Roseobacter denitrificans OCh 114 hypothetical protein YP_680607.1 188122 R 375451 CDS YP_680608.1 110677601 4198182 complement(189417..189947) 1 NC_008209.1 hypothetical protein 189947 4198182 RD1_0193 Roseobacter denitrificans OCh 114 hypothetical protein YP_680608.1 189417 R 375451 CDS YP_680609.1 110677602 4198183 190121..191101 1 NC_008209.1 L-asparaginase II 191101 ansA 4198183 ansA Roseobacter denitrificans OCh 114 L-asparaginase II YP_680609.1 190121 D 375451 CDS YP_680610.1 110677603 4198184 complement(191109..191984) 1 NC_008209.1 phosphoserine phosphatase 191984 serB 4198184 serB Roseobacter denitrificans OCh 114 phosphoserine phosphatase YP_680610.1 191109 R 375451 CDS YP_680611.1 110677604 4198185 192308..193471 1 NC_008209.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 193471 serC 4198185 serC Roseobacter denitrificans OCh 114 phosphoserine aminotransferase YP_680611.1 192308 D 375451 CDS YP_680612.1 110677605 4198186 193514..195109 1 NC_008209.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 195109 serA 4198186 serA Roseobacter denitrificans OCh 114 D-3-phosphoglycerate dehydrogenase YP_680612.1 193514 D 375451 CDS YP_680613.1 110677606 4198187 complement(195174..196205) 1 NC_008209.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 196205 tdh 4198187 tdh Roseobacter denitrificans OCh 114 L-threonine 3-dehydrogenase YP_680613.1 195174 R 375451 CDS YP_680614.1 110677607 4198188 complement(196214..197401) 1 NC_008209.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 197401 kbl 4198188 kbl Roseobacter denitrificans OCh 114 2-amino-3-ketobutyrate CoA ligase YP_680614.1 196214 R 375451 CDS YP_680615.1 110677608 4198189 complement(197496..198059) 1 NC_008209.1 DNA-binding protein 198059 4198189 RD1_0200 Roseobacter denitrificans OCh 114 DNA-binding protein YP_680615.1 197496 R 375451 CDS YP_680616.1 110677609 4198190 198181..199359 1 NC_008209.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 199359 bktB 4198190 bktB Roseobacter denitrificans OCh 114 beta-ketothiolase YP_680616.1 198181 D 375451 CDS YP_680617.1 110677610 4198191 complement(199369..200916) 1 NC_008209.1 ubiquinone biosynthesis protein UbiB 200916 ubiB 4198191 ubiB Roseobacter denitrificans OCh 114 ubiquinone biosynthesis protein UbiB YP_680617.1 199369 R 375451 CDS YP_680618.1 110677611 4198192 complement(200917..201669) 1 NC_008209.1 ubiquinone/menaquinone biosynthesis methyltransferase UbiE 201669 ubiE 4198192 ubiE Roseobacter denitrificans OCh 114 ubiquinone/menaquinone biosynthesis methyltransferase UbiE YP_680618.1 200917 R 375451 CDS YP_680619.1 110677612 4198193 201887..202738 1 NC_008209.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 202738 mutM 4198193 mutM Roseobacter denitrificans OCh 114 formamidopyrimidine-DNA glycosylase YP_680619.1 201887 D 375451 CDS YP_680620.1 110677613 4198194 202803..203579 1 NC_008209.1 enoyl-CoA hydratase/isomerase family protein 203579 4198194 RD1_0205 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase/isomerase family protein YP_680620.1 202803 D 375451 CDS YP_680621.1 110677614 4198195 203608..204015 1 NC_008209.1 hypothetical protein 204015 4198195 RD1_0206 Roseobacter denitrificans OCh 114 hypothetical protein YP_680621.1 203608 D 375451 CDS YP_680622.1 110677615 4198196 204187..204450 1 NC_008209.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 204450 rpsT 4198196 rpsT Roseobacter denitrificans OCh 114 30S ribosomal protein S20 YP_680622.1 204187 D 375451 CDS YP_680623.1 110677616 4198158 204958..206322 1 NC_008209.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 206322 dnaA 4198158 dnaA Roseobacter denitrificans OCh 114 chromosomal replication initiation protein YP_680623.1 204958 D 375451 CDS YP_680624.1 110677617 4198159 206464..207582 1 NC_008209.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 207582 dnaN 4198159 dnaN Roseobacter denitrificans OCh 114 DNA polymerase III subunit beta YP_680624.1 206464 D 375451 CDS YP_680625.1 110677618 4198160 207640..208740 1 NC_008209.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 208740 recF 4198160 recF Roseobacter denitrificans OCh 114 recombination protein F YP_680625.1 207640 D 375451 CDS YP_680626.1 110677619 4198161 208737..209357 1 NC_008209.1 amino acid transporter LysE 209357 4198161 RD1_0211 Roseobacter denitrificans OCh 114 amino acid transporter LysE YP_680626.1 208737 D 375451 CDS YP_680627.1 110677620 4198162 209436..211850 1 NC_008209.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 211850 gyrB 4198162 gyrB Roseobacter denitrificans OCh 114 DNA gyrase subunit B YP_680627.1 209436 D 375451 CDS YP_680628.1 110677621 4198163 complement(211946..212263) 1 NC_008209.1 thioredoxin 212263 4198163 RD1_0213 Roseobacter denitrificans OCh 114 thioredoxin YP_680628.1 211946 R 375451 CDS YP_680629.1 110677622 4198164 complement(212378..213091) 1 NC_008209.1 cytochrome c biogenesis protein 213091 ccdA 4198164 ccdA Roseobacter denitrificans OCh 114 cytochrome c biogenesis protein YP_680629.1 212378 R 375451 CDS YP_680630.1 110677623 4198165 213264..214499 1 NC_008209.1 hypothetical protein 214499 4198165 RD1_0215 Roseobacter denitrificans OCh 114 hypothetical protein YP_680630.1 213264 D 375451 CDS YP_680631.1 110677624 4198166 214501..215940 1 NC_008209.1 uracil-DNA glycosylase 215940 4198166 RD1_0216 Roseobacter denitrificans OCh 114 uracil-DNA glycosylase YP_680631.1 214501 D 375451 CDS YP_680632.1 110677625 4198167 complement(215980..216975) 1 NC_008209.1 myo-inositol dehydrogenase 216975 idhA 4198167 idhA Roseobacter denitrificans OCh 114 myo-inositol dehydrogenase YP_680632.1 215980 R 375451 CDS YP_680633.1 110677626 4198168 complement(216979..217827) 1 NC_008209.1 fructose-bisphosphate aldolase 217827 fba 4198168 fba Roseobacter denitrificans OCh 114 fructose-bisphosphate aldolase YP_680633.1 216979 R 375451 CDS YP_680634.1 110677627 4198169 complement(217824..218666) 1 NC_008209.1 hypothetical protein 218666 4198169 RD1_0219 Roseobacter denitrificans OCh 114 hypothetical protein YP_680634.1 217824 R 375451 CDS YP_680635.1 110677628 4198170 complement(218671..219645) 1 NC_008209.1 pfkB family kinase 219645 4198170 RD1_0220 Roseobacter denitrificans OCh 114 pfkB family kinase YP_680635.1 218671 R 375451 CDS YP_680636.1 110677629 4198171 complement(219669..221534) 1 NC_008209.1 acetolactate synthase 221534 iolD 4198171 iolD Roseobacter denitrificans OCh 114 acetolactate synthase YP_680636.1 219669 R 375451 CDS YP_680637.1 110677630 4198172 221652..222755 1 NC_008209.1 oxidoreductase 222755 4198172 RD1_0222 Roseobacter denitrificans OCh 114 oxidoreductase YP_680637.1 221652 D 375451 CDS YP_680638.1 110677631 4198173 222774..223670 1 NC_008209.1 hypothetical protein 223670 4198173 RD1_0223 Roseobacter denitrificans OCh 114 hypothetical protein YP_680638.1 222774 D 375451 CDS YP_680639.1 110677632 4198174 223684..224817 1 NC_008209.1 oxidoreductase 224817 4198174 RD1_0224 Roseobacter denitrificans OCh 114 oxidoreductase YP_680639.1 223684 D 375451 CDS YP_680640.1 110677633 4198175 224950..225585 1 NC_008209.1 cyclic nucleotide-binding domain-containing protein 225585 4198175 RD1_0225 Roseobacter denitrificans OCh 114 cyclic nucleotide-binding domain-containing protein YP_680640.1 224950 D 375451 CDS YP_680641.1 110677634 4198176 225804..226409 1 NC_008209.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 226409 leuD 4198176 leuD Roseobacter denitrificans OCh 114 isopropylmalate isomerase small subunit YP_680641.1 225804 D 375451 CDS YP_680642.1 110677635 4198177 226454..227707 1 NC_008209.1 hypothetical protein 227707 4198177 RD1_0227 Roseobacter denitrificans OCh 114 hypothetical protein YP_680642.1 226454 D 375451 CDS YP_680643.1 110677636 4195057 227780..228886 1 NC_008209.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 228886 leuB 4195057 leuB Roseobacter denitrificans OCh 114 3-isopropylmalate dehydrogenase YP_680643.1 227780 D 375451 CDS YP_680644.1 110677637 4195058 228998..230002 1 NC_008209.1 hypothetical protein 230002 4195058 RD1_0229 Roseobacter denitrificans OCh 114 hypothetical protein YP_680644.1 228998 D 375451 CDS YP_680645.1 110677638 4195059 complement(230261..231901) 1 NC_008209.1 peptide ABC transporter substrate-binding protein 231901 4195059 RD1_0231 Roseobacter denitrificans OCh 114 peptide ABC transporter substrate-binding protein YP_680645.1 230261 R 375451 CDS YP_680646.1 110677639 4195060 232120..233331 1 NC_008209.1 HAMP domain-containing protein 233331 4195060 RD1_0232 Roseobacter denitrificans OCh 114 HAMP domain-containing protein YP_680646.1 232120 D 375451 CDS YP_680647.1 110677640 4195062 233606..234763 1 NC_008209.1 LacI family transcriptional regulator 234763 4195062 RD1_0234 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_680647.1 233606 D 375451 CDS YP_680648.1 110677641 4195063 234760..235971 1 NC_008209.1 hypothetical protein 235971 4195063 RD1_0235 Roseobacter denitrificans OCh 114 hypothetical protein YP_680648.1 234760 D 375451 CDS YP_680649.1 110677642 4195064 complement(236071..236796) 1 NC_008209.1 hypothetical protein 236796 4195064 RD1_0236 Roseobacter denitrificans OCh 114 hypothetical protein YP_680649.1 236071 R 375451 CDS YP_680650.1 110677643 4195065 complement(236804..237319) 1 NC_008209.1 hypothetical protein 237319 4195065 RD1_0237 Roseobacter denitrificans OCh 114 hypothetical protein YP_680650.1 236804 R 375451 CDS YP_680651.1 110677644 4195066 237454..238695 1 NC_008209.1 oxidoreductase, FAD-binding 238695 4195066 RD1_0238 Roseobacter denitrificans OCh 114 oxidoreductase, FAD-binding YP_680651.1 237454 D 375451 CDS YP_680652.1 110677645 4195067 238716..239705 1 NC_008209.1 peptide ABC transporter solute-binding protein 239705 4195067 RD1_0239 Roseobacter denitrificans OCh 114 peptide ABC transporter solute-binding protein YP_680652.1 238716 D 375451 CDS YP_680653.1 110677646 4195068 239769..240293 1 NC_008209.1 hypothetical protein 240293 4195068 RD1_0240 Roseobacter denitrificans OCh 114 hypothetical protein YP_680653.1 239769 D 375451 CDS YP_680654.1 110677647 4195069 240274..241608 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 241608 4195069 RD1_0241 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_680654.1 240274 D 375451 CDS YP_680655.1 110677648 4195070 241608..242537 1 NC_008209.1 hypothetical protein 242537 4195070 RD1_0242 Roseobacter denitrificans OCh 114 hypothetical protein YP_680655.1 241608 D 375451 CDS YP_680656.1 110677649 4195071 242542..243276 1 NC_008209.1 allophanate hydrolase subunit 1 243276 4195071 RD1_0243 Roseobacter denitrificans OCh 114 allophanate hydrolase subunit 1 YP_680656.1 242542 D 375451 CDS YP_680657.1 110677650 4195072 243273..244295 1 NC_008209.1 allophanate hydrolase subunit 2 244295 4195072 RD1_0244 Roseobacter denitrificans OCh 114 allophanate hydrolase subunit 2 YP_680657.1 243273 D 375451 CDS YP_680658.1 110677651 4195073 244308..245078 1 NC_008209.1 LamB/YcsF family protein 245078 4195073 RD1_0245 Roseobacter denitrificans OCh 114 LamB/YcsF family protein YP_680658.1 244308 D 375451 CDS YP_680659.1 110677652 4195074 245288..245749 1 NC_008209.1 isoquinoline 1-oxidoreductase subunit alpha 245749 iorA 4195074 iorA Roseobacter denitrificans OCh 114 isoquinoline 1-oxidoreductase subunit alpha YP_680659.1 245288 D 375451 CDS YP_680660.1 110677653 4197831 245753..247936 1 NC_008209.1 isoquinoline 1-oxidoreductase subunit beta 247936 iorB 4197831 iorB Roseobacter denitrificans OCh 114 isoquinoline 1-oxidoreductase subunit beta YP_680660.1 245753 D 375451 CDS YP_680661.1 110677654 4197832 248152..249030 1 NC_008209.1 AraC family transcriptional regulator 249030 araC 4197832 araC Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_680661.1 248152 D 375451 CDS YP_680662.1 110677655 4197833 249157..250302 1 NC_008209.1 AraC family transcriptional regulator 250302 4197833 RD1_0249 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_680662.1 249157 D 375451 CDS YP_680663.1 110677656 4197834 250459..251688 1 NC_008209.1 acyl-CoA dehydrogenase 251688 4197834 RD1_0250 Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_680663.1 250459 D 375451 CDS YP_680664.1 110677657 4197835 complement(252232..253581) 1 NC_008209.1 flagellum-specific ATP synthase 253581 fliI 4197835 fliI Roseobacter denitrificans OCh 114 flagellum-specific ATP synthase YP_680664.1 252232 R 375451 CDS YP_680665.1 110677658 4197836 253663..254061 1 NC_008209.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal-body rod protein FlgB 254061 flgB 4197836 flgB Roseobacter denitrificans OCh 114 flagellar basal-body rod protein FlgB YP_680665.1 253663 D 375451 CDS YP_680666.1 110677659 4197837 254075..254464 1 NC_008209.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 254464 flgC 4197837 flgC Roseobacter denitrificans OCh 114 flagellar basal body rod protein FlgC YP_680666.1 254075 D 375451 CDS YP_680667.1 110677660 4197838 254518..254844 1 NC_008209.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar hook-basal body protein FliE 254844 fliE 4197838 fliE Roseobacter denitrificans OCh 114 flagellar hook-basal body protein FliE YP_680667.1 254518 D 375451 CDS YP_680668.1 110677661 4197839 254846..255115 1 NC_008209.1 flagellar biosynthetic protein FliQ 255115 fliQ 4197839 fliQ Roseobacter denitrificans OCh 114 flagellar biosynthetic protein FliQ YP_680668.1 254846 D 375451 CDS YP_680669.1 110677662 4197840 255118..255831 1 NC_008209.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes; flagellar basal body rod protein FlgF 255831 flgF 4197840 flgF Roseobacter denitrificans OCh 114 flagellar basal body rod protein FlgF YP_680669.1 255118 D 375451 CDS YP_680670.1 110677663 4197841 255861..256646 1 NC_008209.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 256646 flgG 4197841 flgG Roseobacter denitrificans OCh 114 flagellar basal body rod protein FlgG YP_680670.1 255861 D 375451 CDS YP_680671.1 110677664 4197842 256643..257065 1 NC_008209.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 257065 flgA 4197842 flgA Roseobacter denitrificans OCh 114 flagellar basal body P-ring biosynthesis protein FlgA YP_680671.1 256643 D 375451 CDS YP_680672.1 110677665 4197843 257075..257806 1 NC_008209.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 257806 flgH 4197843 flgH Roseobacter denitrificans OCh 114 flagellar basal body L-ring protein YP_680672.1 257075 D 375451 CDS YP_680673.1 110677666 4197844 257816..258316 1 NC_008209.1 hypothetical protein 258316 4197844 RD1_0261 Roseobacter denitrificans OCh 114 hypothetical protein YP_680673.1 257816 D 375451 CDS YP_680674.1 110677667 4197845 258378..258602 1 NC_008209.1 transposase 258602 4197845 RD1_0262 Roseobacter denitrificans OCh 114 transposase YP_680674.1 258378 D 375451 CDS YP_680675.1 110677668 4197846 258705..258971 1 NC_008209.1 hypothetical protein 258971 4197846 RD1_0263 Roseobacter denitrificans OCh 114 hypothetical protein YP_680675.1 258705 D 375451 CDS YP_680676.1 110677669 4197847 259000..259518 1 NC_008209.1 integrase catalytic subunit 259518 4197847 RD1_0264 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_680676.1 259000 D 375451 CDS YP_680677.1 110677670 4197848 complement(259899..260636) 1 NC_008209.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 260636 fliP 4197848 fliP Roseobacter denitrificans OCh 114 flagellar biosynthesis protein FliP YP_680677.1 259899 R 375451 CDS YP_680678.1 110677671 4197849 complement(260633..260926) 1 NC_008209.1 flagellar motor switch protein FliN 260926 fliN 4197849 fliN Roseobacter denitrificans OCh 114 flagellar motor switch protein FliN YP_680678.1 260633 R 375451 CDS YP_680679.1 110677672 4197850 complement(260919..261518) 1 NC_008209.1 ABC transporter ATP-binding protein 261518 4197850 RD1_0267 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_680679.1 260919 R 375451 CDS YP_680680.1 110677673 4198448 complement(261518..263140) 1 NC_008209.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 263140 fliF 4198448 fliF Roseobacter denitrificans OCh 114 flagellar MS-ring protein YP_680680.1 261518 R 375451 CDS YP_680681.1 110677674 4198449 263263..263754 1 NC_008209.1 flagellar basal body-associated protein FliL 263754 fliL 4198449 fliL Roseobacter denitrificans OCh 114 flagellar basal body-associated protein FliL YP_680681.1 263263 D 375451 CDS YP_680682.1 110677675 4198450 263765..264133 1 NC_008209.1 hypothetical protein 264133 4198450 RD1_0271 Roseobacter denitrificans OCh 114 hypothetical protein YP_680682.1 263765 D 375451 CDS YP_680683.1 110677676 4198451 264145..264738 1 NC_008209.1 hypothetical protein 264738 4198451 RD1_0272 Roseobacter denitrificans OCh 114 hypothetical protein YP_680683.1 264145 D 375451 CDS YP_680684.1 110677677 4198452 264805..265674 1 NC_008209.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 265674 motA 4198452 motA Roseobacter denitrificans OCh 114 flagellar motor protein MotA YP_680684.1 264805 D 375451 CDS YP_680685.1 110677678 4198453 265671..267926 1 NC_008209.1 hypothetical protein 267926 4198453 RD1_0274 Roseobacter denitrificans OCh 114 hypothetical protein YP_680685.1 265671 D 375451 CDS YP_680686.1 110677679 4198454 268321..268422 1 NC_008209.1 hypothetical protein 268422 4198454 RD1_0275 Roseobacter denitrificans OCh 114 hypothetical protein YP_680686.1 268321 D 375451 CDS YP_680687.1 110677680 4198455 268503..268964 1 NC_008209.1 integrase catalytic subunit 268964 4198455 RD1_0276 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_680687.1 268503 D 375451 CDS YP_680688.1 110677681 4198456 complement(269452..270537) 1 NC_008209.1 ABC transporter ATP-binding protein 270537 4198456 RD1_0277 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_680688.1 269452 R 375451 CDS YP_680689.1 110677682 4198457 complement(270534..271325) 1 NC_008209.1 spermidine-ABC transporter permease 271325 4198457 RD1_0278 Roseobacter denitrificans OCh 114 spermidine-ABC transporter permease YP_680689.1 270534 R 375451 CDS YP_680690.1 110677683 4198458 complement(271322..272299) 1 NC_008209.1 spermidine/putrescine transport system, permease 272299 potB 4198458 potB Roseobacter denitrificans OCh 114 spermidine/putrescine transport system, permease YP_680690.1 271322 R 375451 CDS YP_680691.1 110677684 4198459 complement(272377..273483) 1 NC_008209.1 spermidine/putrescine ABC transporter substrate-binding protein 273483 potD 4198459 potD Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter substrate-binding protein YP_680691.1 272377 R 375451 CDS YP_680692.1 110677685 4198460 complement(273528..274634) 1 NC_008209.1 dehydrogenase 274634 4198460 RD1_0281 Roseobacter denitrificans OCh 114 dehydrogenase YP_680692.1 273528 R 375451 CDS YP_680693.1 110677686 4198461 complement(274631..275218) 1 NC_008209.1 hypothetical protein 275218 4198461 RD1_0282 Roseobacter denitrificans OCh 114 hypothetical protein YP_680693.1 274631 R 375451 CDS YP_680694.1 110677687 4198462 complement(275218..275697) 1 NC_008209.1 hypothetical protein 275697 4198462 RD1_0283 Roseobacter denitrificans OCh 114 hypothetical protein YP_680694.1 275218 R 375451 CDS YP_680695.1 110677688 4198463 complement(275694..277133) 1 NC_008209.1 oxidoreductase 277133 4198463 RD1_0284 Roseobacter denitrificans OCh 114 oxidoreductase YP_680695.1 275694 R 375451 CDS YP_680696.1 110677689 4198464 complement(277202..278539) 1 NC_008209.1 NreB protein 278539 4198464 RD1_0285 Roseobacter denitrificans OCh 114 NreB protein YP_680696.1 277202 R 375451 CDS YP_680697.1 110677690 4198465 278721..279437 1 NC_008209.1 hypothetical protein 279437 4198465 RD1_0286 Roseobacter denitrificans OCh 114 hypothetical protein YP_680697.1 278721 D 375451 CDS YP_680698.1 110677691 4198466 complement(279456..280064) 1 NC_008209.1 enoyl-CoA hydratase/isomerase family protein 280064 4198466 RD1_0287 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase/isomerase family protein YP_680698.1 279456 R 375451 CDS YP_680699.1 110677692 4198428 complement(280061..280810) 1 NC_008209.1 dehydrogenase 280810 4198428 RD1_0288 Roseobacter denitrificans OCh 114 dehydrogenase YP_680699.1 280061 R 375451 CDS YP_680700.1 110677693 4198429 280944..282452 1 NC_008209.1 hypothetical protein 282452 4198429 RD1_0289 Roseobacter denitrificans OCh 114 hypothetical protein YP_680700.1 280944 D 375451 CDS YP_680701.1 110677694 4198430 282483..283883 1 NC_008209.1 PmbA protein 283883 pmbA 4198430 pmbA Roseobacter denitrificans OCh 114 PmbA protein YP_680701.1 282483 D 375451 CDS YP_680702.1 110677695 4198431 283870..284664 1 NC_008209.1 inositol monophosphatase 284664 4198431 RD1_0291 Roseobacter denitrificans OCh 114 inositol monophosphatase YP_680702.1 283870 D 375451 CDS YP_680703.1 110677696 4198432 284674..284967 1 NC_008209.1 hypothetical protein 284967 4198432 RD1_0292 Roseobacter denitrificans OCh 114 hypothetical protein YP_680703.1 284674 D 375451 CDS YP_680704.1 110677697 4198433 284974..286221 1 NC_008209.1 3-deoxy-D-manno-octulosonic acid transferase 286221 4198433 RD1_0293 Roseobacter denitrificans OCh 114 3-deoxy-D-manno-octulosonic acid transferase YP_680704.1 284974 D 375451 CDS YP_680705.1 110677698 4198434 286208..287203 1 NC_008209.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 287203 lpxK 4198434 lpxK Roseobacter denitrificans OCh 114 tetraacyldisaccharide 4'-kinase YP_680705.1 286208 D 375451 CDS YP_680706.1 110677699 4198435 complement(287267..287938) 1 NC_008209.1 thiol-disulfide oxidoreductase D 287938 bdbD 4198435 bdbD Roseobacter denitrificans OCh 114 thiol-disulfide oxidoreductase D YP_680706.1 287267 R 375451 CDS YP_680707.1 110677700 4198436 complement(287952..288461) 1 NC_008209.1 hypothetical protein 288461 4198436 RD1_0296 Roseobacter denitrificans OCh 114 hypothetical protein YP_680707.1 287952 R 375451 CDS YP_680708.1 110677701 4198437 288546..289613 1 NC_008209.1 A/G-specific adenine glycosylase 289613 mutY 4198437 mutY Roseobacter denitrificans OCh 114 A/G-specific adenine glycosylase YP_680708.1 288546 D 375451 CDS YP_680709.1 110677702 4198438 complement(289727..290821) 1 NC_008209.1 modification methylase 290821 ccrM 4198438 ccrM Roseobacter denitrificans OCh 114 modification methylase YP_680709.1 289727 R 375451 CDS YP_680710.1 110677703 4198439 complement(290914..291510) 1 NC_008209.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 291510 rnhB 4198439 rnhB Roseobacter denitrificans OCh 114 ribonuclease HII YP_680710.1 290914 R 375451 CDS YP_680711.1 110677704 4198440 complement(291742..292227) 1 NC_008209.1 hypothetical protein 292227 4198440 RD1_0301 Roseobacter denitrificans OCh 114 hypothetical protein YP_680711.1 291742 R 375451 CDS YP_680712.1 110677705 4198441 292221..292688 1 NC_008209.1 hypothetical protein 292688 4198441 RD1_0302 Roseobacter denitrificans OCh 114 hypothetical protein YP_680712.1 292221 D 375451 CDS YP_680713.1 110677706 4198442 292660..293364 1 NC_008209.1 hypothetical protein 293364 4198442 RD1_0303 Roseobacter denitrificans OCh 114 hypothetical protein YP_680713.1 292660 D 375451 CDS YP_680714.1 110677707 4198443 293443..294213 1 NC_008209.1 4-hydroxy-2-oxovalerate aldolase 294213 bphF 4198443 bphF Roseobacter denitrificans OCh 114 4-hydroxy-2-oxovalerate aldolase YP_680714.1 293443 D 375451 CDS YP_680715.1 110677708 4198444 complement(294210..295361) 1 NC_008209.1 hypothetical protein 295361 4198444 RD1_0305 Roseobacter denitrificans OCh 114 hypothetical protein YP_680715.1 294210 R 375451 CDS YP_680716.1 110677709 4198445 295514..296536 1 NC_008209.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 296536 asd 4198445 asd Roseobacter denitrificans OCh 114 aspartate-semialdehyde dehydrogenase YP_680716.1 295514 D 375451 CDS YP_680717.1 110677710 4198446 complement(296611..297165) 1 NC_008209.1 hypothetical protein 297165 4198446 RD1_0307 Roseobacter denitrificans OCh 114 hypothetical protein YP_680717.1 296611 R 375451 CDS YP_680718.1 110677711 4198447 complement(297162..298934) 1 NC_008209.1 glycerophosphoryl diester phosphodiesterase family protein 298934 glpQ 4198447 glpQ Roseobacter denitrificans OCh 114 glycerophosphoryl diester phosphodiesterase family protein YP_680718.1 297162 R 375451 CDS YP_680719.1 110677712 4195501 complement(299130..299540) 1 NC_008209.1 hypothetical protein 299540 4195501 RD1_0309 Roseobacter denitrificans OCh 114 hypothetical protein YP_680719.1 299130 R 375451 CDS YP_680720.1 110677713 4195502 complement(299577..299888) 1 NC_008209.1 hypothetical protein 299888 4195502 RD1_0310 Roseobacter denitrificans OCh 114 hypothetical protein YP_680720.1 299577 R 375451 CDS YP_680721.1 110677714 4195503 complement(299893..300870) 1 NC_008209.1 hypothetical protein 300870 4195503 RD1_0311 Roseobacter denitrificans OCh 114 hypothetical protein YP_680721.1 299893 R 375451 CDS YP_680722.1 110677715 4195504 complement(300952..301602) 1 NC_008209.1 carbonate anhydratase 301602 cynT 4195504 cynT Roseobacter denitrificans OCh 114 carbonate anhydratase YP_680722.1 300952 R 375451 CDS YP_680723.1 110677716 4195505 301733..302128 1 NC_008209.1 hypothetical protein 302128 4195505 RD1_0313 Roseobacter denitrificans OCh 114 hypothetical protein YP_680723.1 301733 D 375451 CDS YP_680724.1 110677717 4195506 302192..303574 1 NC_008209.1 leucine aminopeptidase 303574 pepA 4195506 pepA Roseobacter denitrificans OCh 114 leucine aminopeptidase YP_680724.1 302192 D 375451 CDS YP_680725.1 110677718 4195507 303571..304365 1 NC_008209.1 NlpC/P60 domain-containing protein 304365 4195507 RD1_0315 Roseobacter denitrificans OCh 114 NlpC/P60 domain-containing protein YP_680725.1 303571 D 375451 CDS YP_680726.1 110677719 4195508 complement(304378..304725) 1 NC_008209.1 hypothetical protein 304725 4195508 RD1_0316 Roseobacter denitrificans OCh 114 hypothetical protein YP_680726.1 304378 R 375451 CDS YP_680727.1 110677720 4195509 complement(304795..306456) 1 NC_008209.1 hypothetical protein 306456 4195509 RD1_0317 Roseobacter denitrificans OCh 114 hypothetical protein YP_680727.1 304795 R 375451 CDS YP_680728.1 110677721 4195510 complement(306540..307157) 1 NC_008209.1 TetR family transcriptional regulator 307157 4195510 RD1_0318 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_680728.1 306540 R 375451 CDS YP_680729.1 110677722 4195511 307438..308367 1 NC_008209.1 auxin efflux carrier family protein 308367 4195511 RD1_0319 Roseobacter denitrificans OCh 114 auxin efflux carrier family protein YP_680729.1 307438 D 375451 CDS YP_680730.1 110677723 4195512 308437..309267 1 NC_008209.1 S-formylglutathione hydrolase 309267 fghA 4195512 fghA Roseobacter denitrificans OCh 114 S-formylglutathione hydrolase YP_680730.1 308437 D 375451 CDS YP_680731.1 110677724 4195513 309264..309719 1 NC_008209.1 YaiI/YqxD family protein 309719 4195513 RD1_0321 Roseobacter denitrificans OCh 114 YaiI/YqxD family protein YP_680731.1 309264 D 375451 CDS YP_680732.1 110677725 4195514 309740..310372 1 NC_008209.1 hydrolase 310372 4195514 RD1_0322 Roseobacter denitrificans OCh 114 hydrolase YP_680732.1 309740 D 375451 CDS YP_680733.1 110677726 4195515 310369..311292 1 NC_008209.1 ornithine cyclodeaminase 311292 4195515 RD1_0323 Roseobacter denitrificans OCh 114 ornithine cyclodeaminase YP_680733.1 310369 D 375451 CDS YP_680734.1 110677727 4195516 311289..312212 1 NC_008209.1 alpha/beta hydrolase 312212 4195516 RD1_0324 Roseobacter denitrificans OCh 114 alpha/beta hydrolase YP_680734.1 311289 D 375451 CDS YP_680735.1 110677728 4195517 complement(312209..313501) 1 NC_008209.1 major facilitator transporter 313501 4195517 RD1_0325 Roseobacter denitrificans OCh 114 major facilitator transporter YP_680735.1 312209 R 375451 CDS YP_680736.1 110677729 4195518 313515..314642 1 NC_008209.1 ATPase 314642 4195518 RD1_0326 Roseobacter denitrificans OCh 114 ATPase YP_680736.1 313515 D 375451 CDS YP_680737.1 110677730 4195519 complement(314648..315922) 1 NC_008209.1 folC bifunctional protein 315922 folC 4195519 folC Roseobacter denitrificans OCh 114 folC bifunctional protein YP_680737.1 314648 R 375451 CDS YP_680738.1 110677731 4198020 complement(315919..316863) 1 NC_008209.1 acetyl-CoA carboxylase, carboxyl transferase subunit beta 316863 accD 4198020 accD Roseobacter denitrificans OCh 114 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_680738.1 315919 R 375451 CDS YP_680739.1 110677732 4198021 complement(316922..317821) 1 NC_008209.1 CAAX amino terminal protease family protein 317821 4198021 RD1_0329 Roseobacter denitrificans OCh 114 CAAX amino terminal protease family protein YP_680739.1 316922 R 375451 CDS YP_680740.1 110677733 4198022 complement(317831..318001) 1 NC_008209.1 hypothetical protein 318001 4198022 RD1_0330 Roseobacter denitrificans OCh 114 hypothetical protein YP_680740.1 317831 R 375451 CDS YP_680741.1 110677734 4198023 complement(318011..320953) 1 NC_008209.1 ABC transporter 320953 4198023 RD1_0331 Roseobacter denitrificans OCh 114 ABC transporter YP_680741.1 318011 R 375451 CDS YP_680742.1 110677735 4198024 321157..322920 1 NC_008209.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 322920 ilvD 4198024 ilvD Roseobacter denitrificans OCh 114 dihydroxy-acid dehydratase YP_680742.1 321157 D 375451 CDS YP_680743.1 110677736 4198025 complement(323220..324560) 1 NC_008209.1 carboxyl-terminal protease family protein 324560 ctpA 4198025 ctpA Roseobacter denitrificans OCh 114 carboxyl-terminal protease family protein YP_680743.1 323220 R 375451 CDS YP_680744.1 110677737 4198026 complement(324567..325709) 1 NC_008209.1 M23 peptidase domain-containing protein 325709 4198026 RD1_0334 Roseobacter denitrificans OCh 114 M23 peptidase domain-containing protein YP_680744.1 324567 R 375451 CDS YP_680745.1 110677738 4198027 complement(325694..327211) 1 NC_008209.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 327211 gpmI 4198027 gpmI Roseobacter denitrificans OCh 114 phosphoglyceromutase YP_680745.1 325694 R 375451 CDS YP_680746.1 110677739 4198028 complement(327286..330261) 1 NC_008209.1 DNA polymerase III subunit alpha 330261 dnaE 4198028 dnaE Roseobacter denitrificans OCh 114 DNA polymerase III subunit alpha YP_680746.1 327286 R 375451 CDS YP_680747.1 110677740 4198029 330297..330443 1 NC_008209.1 hypothetical protein 330443 4198029 RD1_0338 Roseobacter denitrificans OCh 114 hypothetical protein YP_680747.1 330297 D 375451 CDS YP_680748.1 110677741 4198030 331353..333293 1 NC_008209.1 transposase 333293 4198030 RD1_0339 Roseobacter denitrificans OCh 114 transposase YP_680748.1 331353 D 375451 CDS YP_680749.1 110677742 4198031 333253..334092 1 NC_008209.1 hypothetical protein 334092 4198031 RD1_0340 Roseobacter denitrificans OCh 114 hypothetical protein YP_680749.1 333253 D 375451 CDS YP_680750.1 110677743 4198032 334092..334430 1 NC_008209.1 hypothetical protein 334430 4198032 RD1_0341 Roseobacter denitrificans OCh 114 hypothetical protein YP_680750.1 334092 D 375451 CDS YP_680751.1 110677744 4198033 334427..334750 1 NC_008209.1 hypothetical protein 334750 4198033 RD1_0342 Roseobacter denitrificans OCh 114 hypothetical protein YP_680751.1 334427 D 375451 CDS YP_680752.1 110677745 4198034 334747..335157 1 NC_008209.1 hypothetical protein 335157 4198034 RD1_0343 Roseobacter denitrificans OCh 114 hypothetical protein YP_680752.1 334747 D 375451 CDS YP_680753.1 110677746 4198035 335490..336506 1 NC_008209.1 hypothetical protein 336506 4198035 RD1_0344 Roseobacter denitrificans OCh 114 hypothetical protein YP_680753.1 335490 D 375451 CDS YP_680754.1 110677747 4198036 336530..337429 1 NC_008209.1 hypothetical protein 337429 4198036 RD1_0345 Roseobacter denitrificans OCh 114 hypothetical protein YP_680754.1 336530 D 375451 CDS YP_680755.1 110677748 4198037 337614..337979 1 NC_008209.1 hypothetical protein 337979 4198037 RD1_0346 Roseobacter denitrificans OCh 114 hypothetical protein YP_680755.1 337614 D 375451 CDS YP_680756.1 110677749 4198038 337985..338479 1 NC_008209.1 phage virion morphogenesis protein 338479 4198038 RD1_0348 Roseobacter denitrificans OCh 114 phage virion morphogenesis protein YP_680756.1 337985 D 375451 CDS YP_680757.1 110677750 4198039 339313..342114 1 NC_008209.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 342114 polA 4198039 polA Roseobacter denitrificans OCh 114 DNA polymerase I YP_680757.1 339313 D 375451 CDS YP_680758.1 110677751 4198119 complement(342206..342967) 1 NC_008209.1 hypothetical protein 342967 4198119 RD1_0350 Roseobacter denitrificans OCh 114 hypothetical protein YP_680758.1 342206 R 375451 CDS YP_680759.1 110677752 4198120 complement(343043..343618) 1 NC_008209.1 hypothetical protein 343618 4198120 RD1_0352 Roseobacter denitrificans OCh 114 hypothetical protein YP_680759.1 343043 R 375451 CDS YP_680760.1 110677753 4198121 343688..344695 1 NC_008209.1 methanol dehydrogenase regulator moxR 344695 moxR 4198121 moxR Roseobacter denitrificans OCh 114 methanol dehydrogenase regulator moxR YP_680760.1 343688 D 375451 CDS YP_680761.1 110677754 4198122 344692..345597 1 NC_008209.1 hypothetical protein 345597 4198122 RD1_0354 Roseobacter denitrificans OCh 114 hypothetical protein YP_680761.1 344692 D 375451 CDS YP_680762.1 110677755 4198123 345594..348371 1 NC_008209.1 hypothetical protein 348371 4198123 RD1_0355 Roseobacter denitrificans OCh 114 hypothetical protein YP_680762.1 345594 D 375451 CDS YP_680763.1 110677756 4198124 348368..350410 1 NC_008209.1 hypothetical protein 350410 4198124 RD1_0356 Roseobacter denitrificans OCh 114 hypothetical protein YP_680763.1 348368 D 375451 CDS YP_680764.1 110677757 4198125 350567..352768 1 NC_008209.1 hybrid sensory histidine kinase 352768 4198125 RD1_0357 Roseobacter denitrificans OCh 114 hybrid sensory histidine kinase YP_680764.1 350567 D 375451 CDS YP_680765.1 110677758 4198126 complement(352753..353532) 1 NC_008209.1 hypothetical protein 353532 4198126 RD1_0358 Roseobacter denitrificans OCh 114 hypothetical protein YP_680765.1 352753 R 375451 CDS YP_680766.1 110677759 4198127 complement(353567..355609) 1 NC_008209.1 ATP-dependent DNA helicase RecQ 355609 recQ 4198127 recQ Roseobacter denitrificans OCh 114 ATP-dependent DNA helicase RecQ YP_680766.1 353567 R 375451 CDS YP_680767.1 110677760 4198128 complement(355717..356004) 1 NC_008209.1 hypothetical protein 356004 4198128 RD1_0360 Roseobacter denitrificans OCh 114 hypothetical protein YP_680767.1 355717 R 375451 CDS YP_680768.1 110677761 4198129 356161..357525 1 NC_008209.1 major facilitator superfamily permease 357525 4198129 RD1_0361 Roseobacter denitrificans OCh 114 major facilitator superfamily permease YP_680768.1 356161 D 375451 CDS YP_680769.1 110677762 4198130 357522..358451 1 NC_008209.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; murein endopeptidase 358451 mepA 4198130 mepA Roseobacter denitrificans OCh 114 murein endopeptidase YP_680769.1 357522 D 375451 CDS YP_680770.1 110677763 4198131 358424..359344 1 NC_008209.1 hypothetical protein 359344 4198131 RD1_0364 Roseobacter denitrificans OCh 114 hypothetical protein YP_680770.1 358424 D 375451 CDS YP_680771.1 110677764 4198132 359414..360034 1 NC_008209.1 hypothetical protein 360034 4198132 RD1_0365 Roseobacter denitrificans OCh 114 hypothetical protein YP_680771.1 359414 D 375451 CDS YP_680772.1 110677765 4198133 360368..360784 1 NC_008209.1 peptidyl-tRNA hydrolase domain-containing protein 360784 4198133 RD1_0366 Roseobacter denitrificans OCh 114 peptidyl-tRNA hydrolase domain-containing protein YP_680772.1 360368 D 375451 CDS YP_680773.1 110677766 4198134 360858..361604 1 NC_008209.1 3'- 5' exonuclease family protein 361604 4198134 RD1_0367 Roseobacter denitrificans OCh 114 3'- 5' exonuclease family protein YP_680773.1 360858 D 375451 CDS YP_680774.1 110677767 4198135 361601..362563 1 NC_008209.1 arabinose 5-phosphate isomerase 362563 kdsD 4198135 kdsD Roseobacter denitrificans OCh 114 arabinose 5-phosphate isomerase YP_680774.1 361601 D 375451 CDS YP_680775.1 110677768 4198136 362569..363177 1 NC_008209.1 hypothetical protein 363177 4198136 RD1_0369 Roseobacter denitrificans OCh 114 hypothetical protein YP_680775.1 362569 D 375451 CDS YP_680776.1 110677769 4198137 363181..363672 1 NC_008209.1 hypothetical protein 363672 4198137 RD1_0370 Roseobacter denitrificans OCh 114 hypothetical protein YP_680776.1 363181 D 375451 CDS YP_680777.1 110677770 4198408 363673..364431 1 NC_008209.1 ABC transporter ATP-binding protein 364431 4198408 RD1_0371 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_680777.1 363673 D 375451 CDS YP_680778.1 110677771 4198409 364678..365244 1 NC_008209.1 sigma-54 modulation protein 365244 4198409 RD1_0372 Roseobacter denitrificans OCh 114 sigma-54 modulation protein YP_680778.1 364678 D 375451 CDS YP_680779.1 110677772 4198410 365285..365749 1 NC_008209.1 nitrogen regulatory IIA protein 365749 ptsN 4198410 ptsN Roseobacter denitrificans OCh 114 nitrogen regulatory IIA protein YP_680779.1 365285 D 375451 CDS YP_680780.1 110677773 4198411 complement(365801..366694) 1 NC_008209.1 UTP-glucose-1-phosphate uridylyltransferase 366694 gtaB 4198411 gtaB Roseobacter denitrificans OCh 114 UTP-glucose-1-phosphate uridylyltransferase YP_680780.1 365801 R 375451 CDS YP_680781.1 110677774 4198412 complement(366908..367708) 1 NC_008209.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 367708 kdsB 4198412 kdsB Roseobacter denitrificans OCh 114 3-deoxy-manno-octulosonate cytidylyltransferase YP_680781.1 366908 R 375451 CDS YP_680782.1 110677775 4198413 complement(367708..368508) 1 NC_008209.1 3'(2'),5'-bisphosphate nucleotidase 368508 cysQ 4198413 cysQ Roseobacter denitrificans OCh 114 3'(2'),5'-bisphosphate nucleotidase YP_680782.1 367708 R 375451 CDS YP_680783.1 110677776 4198414 complement(368844..369443) 1 NC_008209.1 alkylated DNA repair protein 369443 alkB 4198414 alkB Roseobacter denitrificans OCh 114 alkylated DNA repair protein YP_680783.1 368844 R 375451 CDS YP_680784.1 110677777 4198415 369654..371564 1 NC_008209.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 371564 dnaK 4198415 dnaK Roseobacter denitrificans OCh 114 molecular chaperone DnaK YP_680784.1 369654 D 375451 CDS YP_680785.1 110677778 4198416 371643..372797 1 NC_008209.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 372797 dnaJ 4198416 dnaJ Roseobacter denitrificans OCh 114 molecular chaperone DnaJ YP_680785.1 371643 D 375451 CDS YP_680786.1 110677779 4198417 complement(372925..373020) 1 NC_008209.1 hypothetical protein 373020 4198417 RD1_0380 Roseobacter denitrificans OCh 114 hypothetical protein YP_680786.1 372925 R 375451 CDS YP_680787.1 110677780 4198418 complement(373054..375768) 1 NC_008209.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 375768 secA 4198418 secA Roseobacter denitrificans OCh 114 preprotein translocase subunit SecA YP_680787.1 373054 R 375451 CDS YP_680788.1 110677781 4198419 375943..376800 1 NC_008209.1 peptidyl-prolyl cis-trans isomerase domain-containing protein 376800 4198419 RD1_0383 Roseobacter denitrificans OCh 114 peptidyl-prolyl cis-trans isomerase domain-containing protein YP_680788.1 375943 D 375451 CDS YP_680789.1 110677782 4198420 376807..378033 1 NC_008209.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 378033 argJ 4198420 argJ Roseobacter denitrificans OCh 114 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_680789.1 376807 D 375451 CDS YP_680790.1 110677783 4198421 378052..378450 1 NC_008209.1 mutator mutT protein 378450 mutT 4198421 mutT Roseobacter denitrificans OCh 114 mutator mutT protein YP_680790.1 378052 D 375451 CDS YP_680791.1 110677784 4198422 complement(378784..381258) 1 NC_008209.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 381258 infB 4198422 infB Roseobacter denitrificans OCh 114 translation initiation factor IF-2 YP_680791.1 378784 R 375451 CDS YP_680792.1 110677785 4198423 complement(381268..381888) 1 NC_008209.1 hypothetical protein 381888 4198423 RD1_0387 Roseobacter denitrificans OCh 114 hypothetical protein YP_680792.1 381268 R 375451 CDS YP_680793.1 110677786 4198424 complement(381911..383527) 1 NC_008209.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 383527 nusA 4198424 nusA Roseobacter denitrificans OCh 114 transcription elongation factor NusA YP_680793.1 381911 R 375451 CDS YP_680794.1 110677787 4198425 complement(383527..384117) 1 NC_008209.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 384117 4198425 RD1_0389 Roseobacter denitrificans OCh 114 hypothetical protein YP_680794.1 383527 R 375451 CDS YP_680795.1 110677788 4198426 complement(384261..385154) 1 NC_008209.1 ABC transporter substrate-binding protein 385154 4198426 RD1_0390 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_680795.1 384261 R 375451 CDS YP_680796.1 110677789 4198427 complement(385151..386092) 1 NC_008209.1 proline iminopeptidase 386092 pip 4198427 pip Roseobacter denitrificans OCh 114 proline iminopeptidase YP_680796.1 385151 R 375451 CDS YP_680797.1 110677790 4195382 386171..386917 1 NC_008209.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 386917 ubiG 4195382 ubiG Roseobacter denitrificans OCh 114 3-demethylubiquinone-9 3-methyltransferase YP_680797.1 386171 D 375451 CDS YP_680798.1 110677791 4195383 complement(387016..387459) 1 NC_008209.1 MarR family transcriptional regulator 387459 4195383 RD1_0393 Roseobacter denitrificans OCh 114 MarR family transcriptional regulator YP_680798.1 387016 R 375451 CDS YP_680799.1 110677792 4195384 complement(387460..388290) 1 NC_008209.1 carbon-nitrogen family hydrolase 388290 4195384 RD1_0395 Roseobacter denitrificans OCh 114 carbon-nitrogen family hydrolase YP_680799.1 387460 R 375451 CDS YP_680800.1 110677793 4195385 complement(388290..388547) 1 NC_008209.1 glutaredoxin 3 388547 grxC 4195385 grxC Roseobacter denitrificans OCh 114 glutaredoxin 3 YP_680800.1 388290 R 375451 CDS YP_680801.1 110677794 4195386 complement(388587..389318) 1 NC_008209.1 competence protein F 389318 comF 4195386 comF Roseobacter denitrificans OCh 114 competence protein F YP_680801.1 388587 R 375451 CDS YP_680802.1 110677795 4195387 389437..390153 1 NC_008209.1 hypothetical protein 390153 4195387 RD1_0400 Roseobacter denitrificans OCh 114 hypothetical protein YP_680802.1 389437 D 375451 CDS YP_680803.1 110677796 4195388 390239..391282 1 NC_008209.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 391282 hemH 4195388 hemH Roseobacter denitrificans OCh 114 ferrochelatase YP_680803.1 390239 D 375451 CDS YP_680804.1 110677797 4195389 complement(391673..392284) 1 NC_008209.1 ErfK/YbiS/YcfS/YnhG family protein 392284 4195389 RD1_0402 Roseobacter denitrificans OCh 114 ErfK/YbiS/YcfS/YnhG family protein YP_680804.1 391673 R 375451 CDS YP_680805.1 110677798 4195390 392449..392994 1 NC_008209.1 SCP-like extracellular protein 392994 4195390 RD1_0403 Roseobacter denitrificans OCh 114 SCP-like extracellular protein YP_680805.1 392449 D 375451 CDS YP_680806.1 110677799 4195391 complement(392999..393460) 1 NC_008209.1 ErfK/YbiS/YcfS/YnhG family protein 393460 4195391 RD1_0404 Roseobacter denitrificans OCh 114 ErfK/YbiS/YcfS/YnhG family protein YP_680806.1 392999 R 375451 CDS YP_680807.1 110677800 4195392 complement(393586..394365) 1 NC_008209.1 voltage-gated sodium channel subunit 394365 ccaA 4195392 ccaA Roseobacter denitrificans OCh 114 voltage-gated sodium channel subunit YP_680807.1 393586 R 375451 CDS YP_680808.1 110677801 4195393 complement(394385..395611) 1 NC_008209.1 RNA methyltransferase 395611 4195393 RD1_0406 Roseobacter denitrificans OCh 114 RNA methyltransferase YP_680808.1 394385 R 375451 CDS YP_680809.1 110677802 4195394 complement(395650..397482) 1 NC_008209.1 ABC transporter transmembrane ATP-binding protein 397482 4195394 RD1_0407 Roseobacter denitrificans OCh 114 ABC transporter transmembrane ATP-binding protein YP_680809.1 395650 R 375451 CDS YP_680810.1 110677803 4195395 complement(397479..399317) 1 NC_008209.1 ABC transporter transmembrane ATP-binding protein 399317 4195395 RD1_0408 Roseobacter denitrificans OCh 114 ABC transporter transmembrane ATP-binding protein YP_680810.1 397479 R 375451 CDS YP_680811.1 110677804 4195396 complement(399488..400666) 1 NC_008209.1 poly(A) polymerase 400666 4195396 RD1_0409 Roseobacter denitrificans OCh 114 poly(A) polymerase YP_680811.1 399488 R 375451 CDS YP_680812.1 110677805 4195397 complement(400645..401235) 1 NC_008209.1 hydrolase 401235 4195397 RD1_0410 Roseobacter denitrificans OCh 114 hydrolase YP_680812.1 400645 R 375451 CDS YP_680813.1 110677806 4195398 complement(401228..402259) 1 NC_008209.1 chaperonin, 33 kDa 402259 hslO 4195398 hslO Roseobacter denitrificans OCh 114 chaperonin, 33 kDa YP_680813.1 401228 R 375451 CDS YP_680814.1 110677807 4195399 402299..402748 1 NC_008209.1 hypothetical protein 402748 4195399 RD1_0412 Roseobacter denitrificans OCh 114 hypothetical protein YP_680814.1 402299 D 375451 CDS YP_680815.1 110677808 4195400 complement(402724..403935) 1 NC_008209.1 response regulator 403935 4195400 RD1_0413 Roseobacter denitrificans OCh 114 response regulator YP_680815.1 402724 R 375451 CDS YP_680816.1 110677809 4197982 404158..404490 1 NC_008209.1 Hpt domain-containing protein 404490 4197982 RD1_0414 Roseobacter denitrificans OCh 114 Hpt domain-containing protein YP_680816.1 404158 D 375451 CDS YP_680817.1 110677810 4197983 complement(404487..405278) 1 NC_008209.1 dehydrogenase 405278 4197983 RD1_0415 Roseobacter denitrificans OCh 114 dehydrogenase YP_680817.1 404487 R 375451 CDS YP_680818.1 110677811 4197984 complement(405287..406519) 1 NC_008209.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 406519 ilvA 4197984 ilvA Roseobacter denitrificans OCh 114 threonine dehydratase YP_680818.1 405287 R 375451 CDS YP_680819.1 110677812 4197985 406646..407866 1 NC_008209.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 407866 argG 4197985 argG Roseobacter denitrificans OCh 114 argininosuccinate synthase YP_680819.1 406646 D 375451 CDS YP_680820.1 110677813 4197986 complement(407957..408661) 1 NC_008209.1 hypothetical protein 408661 4197986 RD1_0418 Roseobacter denitrificans OCh 114 hypothetical protein YP_680820.1 407957 R 375451 CDS YP_680821.1 110677814 4197987 408854..409516 1 NC_008209.1 methionine-S-sulfoxide reductase 409516 msrA-1 4197987 msrA-1 Roseobacter denitrificans OCh 114 methionine-S-sulfoxide reductase YP_680821.1 408854 D 375451 CDS YP_680822.1 110677815 4197988 complement(409513..410385) 1 NC_008209.1 ribokinase 410385 rbsK 4197988 rbsK Roseobacter denitrificans OCh 114 ribokinase YP_680822.1 409513 R 375451 CDS YP_680823.1 110677816 4197989 complement(410385..412640) 1 NC_008209.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 412640 tme 4197989 tme Roseobacter denitrificans OCh 114 malic enzyme YP_680823.1 410385 R 375451 CDS YP_680824.1 110677817 4197990 412776..415412 1 NC_008209.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 415412 mutS 4197990 mutS Roseobacter denitrificans OCh 114 DNA mismatch repair protein MutS YP_680824.1 412776 D 375451 CDS YP_680825.1 110677818 4197991 complement(415441..416004) 1 NC_008209.1 heat shock protein GrpE 416004 grpE 4197991 grpE Roseobacter denitrificans OCh 114 heat shock protein GrpE YP_680825.1 415441 R 375451 CDS YP_680826.1 110677819 4197992 complement(416014..417048) 1 NC_008209.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 417048 hrcA 4197992 hrcA Roseobacter denitrificans OCh 114 heat-inducible transcription repressor YP_680826.1 416014 R 375451 CDS YP_680827.1 110677820 4197993 417192..417905 1 NC_008209.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 417905 rph 4197993 rph Roseobacter denitrificans OCh 114 ribonuclease PH YP_680827.1 417192 D 375451 CDS YP_680828.1 110677821 4197994 417902..418513 1 NC_008209.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 418513 4197994 RD1_0427 Roseobacter denitrificans OCh 114 deoxyribonucleotide triphosphate pyrophosphatase YP_680828.1 417902 D 375451 CDS YP_680829.1 110677822 4197995 418506..419663 1 NC_008209.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 419663 hemN 4197995 hemN Roseobacter denitrificans OCh 114 coproporphyrinogen III oxidase YP_680829.1 418506 D 375451 CDS YP_680830.1 110677823 4197996 complement(419660..420556) 1 NC_008209.1 chromosome partitioning protein parB 420556 parB 4197996 parB Roseobacter denitrificans OCh 114 chromosome partitioning protein parB YP_680830.1 419660 R 375451 CDS YP_680831.1 110677824 4197997 complement(420566..421375) 1 NC_008209.1 chromosome partitioning protein ParA 421375 parA 4197997 parA Roseobacter denitrificans OCh 114 chromosome partitioning protein ParA YP_680831.1 420566 R 375451 CDS YP_680832.1 110677825 4197998 complement(421368..421967) 1 NC_008209.1 methyltransferase GidB 421967 gidB 4197998 gidB Roseobacter denitrificans OCh 114 methyltransferase GidB YP_680832.1 421368 R 375451 CDS YP_680833.1 110677826 4197999 complement(421979..423850) 1 NC_008209.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 423850 gidA 4197999 gidA Roseobacter denitrificans OCh 114 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_680833.1 421979 R 375451 CDS YP_680834.1 110677827 4198000 complement(423855..425141) 1 NC_008209.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 425141 trmE 4198000 trmE Roseobacter denitrificans OCh 114 tRNA modification GTPase TrmE YP_680834.1 423855 R 375451 CDS YP_680835.1 110677828 4198001 complement(425171..426439) 1 NC_008209.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 426439 rho 4198001 rho Roseobacter denitrificans OCh 114 transcription termination factor Rho YP_680835.1 425171 R 375451 CDS YP_680836.1 110677829 4198330 complement(426595..427044) 1 NC_008209.1 hypothetical protein 427044 4198330 RD1_0435 Roseobacter denitrificans OCh 114 hypothetical protein YP_680836.1 426595 R 375451 CDS YP_680837.1 110677830 4198331 427268..427366 1 NC_008209.1 hypothetical protein 427366 4198331 RD1_0436 Roseobacter denitrificans OCh 114 hypothetical protein YP_680837.1 427268 D 375451 CDS YP_680838.1 110677831 4198332 427445..428044 1 NC_008209.1 septum formation protein 428044 maf 4198332 maf Roseobacter denitrificans OCh 114 septum formation protein YP_680838.1 427445 D 375451 CDS YP_680839.1 110677832 4198333 428041..428874 1 NC_008209.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 428874 aroE 4198333 aroE Roseobacter denitrificans OCh 114 shikimate 5-dehydrogenase YP_680839.1 428041 D 375451 CDS YP_680840.1 110677833 4198334 428871..429464 1 NC_008209.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 429464 coaE 4198334 coaE Roseobacter denitrificans OCh 114 dephospho-CoA kinase YP_680840.1 428871 D 375451 CDS YP_680841.1 110677834 4198335 429457..430143 1 NC_008209.1 DNA polymerase III subunit epsilon 430143 dnaQ 4198335 dnaQ Roseobacter denitrificans OCh 114 DNA polymerase III subunit epsilon YP_680841.1 429457 D 375451 CDS YP_680842.1 110677835 4198336 complement(430146..430646) 1 NC_008209.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 430646 secB 4198336 secB Roseobacter denitrificans OCh 114 preprotein translocase subunit SecB YP_680842.1 430146 R 375451 CDS YP_680843.1 110677836 4198337 complement(430700..431191) 1 NC_008209.1 FxsA protein 431191 fxsA 4198337 fxsA Roseobacter denitrificans OCh 114 FxsA protein YP_680843.1 430700 R 375451 CDS YP_680844.1 110677837 4198338 431296..431958 1 NC_008209.1 hypothetical protein 431958 4198338 RD1_0444 Roseobacter denitrificans OCh 114 hypothetical protein YP_680844.1 431296 D 375451 CDS YP_680845.1 110677838 4198339 432097..432687 1 NC_008209.1 Smr domain-containing protein 432687 4198339 RD1_0446 Roseobacter denitrificans OCh 114 Smr domain-containing protein YP_680845.1 432097 D 375451 CDS YP_680846.1 110677839 4198340 complement(432684..433901) 1 NC_008209.1 transmembrane transport protein 433901 4198340 RD1_0447 Roseobacter denitrificans OCh 114 transmembrane transport protein YP_680846.1 432684 R 375451 CDS YP_680847.1 110677840 4198341 complement(433940..435247) 1 NC_008209.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 435247 hslU 4198341 hslU Roseobacter denitrificans OCh 114 ATP-dependent protease ATP-binding subunit HslU YP_680847.1 433940 R 375451 CDS YP_680848.1 110677841 4198342 complement(435339..436451) 1 NC_008209.1 hypothetical protein 436451 4198342 RD1_0449 Roseobacter denitrificans OCh 114 hypothetical protein YP_680848.1 435339 R 375451 CDS YP_680849.1 110677842 4198343 complement(436403..436960) 1 NC_008209.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 436960 hslV 4198343 hslV Roseobacter denitrificans OCh 114 ATP-dependent protease peptidase subunit YP_680849.1 436403 R 375451 CDS YP_680850.1 110677843 4198344 complement(437073..437393) 1 NC_008209.1 thioredoxin 437393 trxA 4198344 trxA Roseobacter denitrificans OCh 114 thioredoxin YP_680850.1 437073 R 375451 CDS YP_680851.1 110677844 4198345 complement(437431..440808) 1 NC_008209.1 ATP-dependent DNA nuclease 440808 4198345 RD1_0452 Roseobacter denitrificans OCh 114 ATP-dependent DNA nuclease YP_680851.1 437431 R 375451 CDS YP_680852.1 110677845 4198346 complement(440805..443762) 1 NC_008209.1 hypothetical protein 443762 4198346 RD1_0453 Roseobacter denitrificans OCh 114 hypothetical protein YP_680852.1 440805 R 375451 CDS YP_680853.1 110677846 4198347 complement(443755..444438) 1 NC_008209.1 nucleotidyltransferase family protein 444438 4198347 RD1_0454 Roseobacter denitrificans OCh 114 nucleotidyltransferase family protein YP_680853.1 443755 R 375451 CDS YP_680854.1 110677847 4198348 complement(444423..445442) 1 NC_008209.1 hypothetical protein 445442 4198348 RD1_0455 Roseobacter denitrificans OCh 114 hypothetical protein YP_680854.1 444423 R 375451 CDS YP_680855.1 110677848 4198138 complement(445439..445915) 1 NC_008209.1 hypothetical protein 445915 4198138 RD1_0456 Roseobacter denitrificans OCh 114 hypothetical protein YP_680855.1 445439 R 375451 CDS YP_680856.1 110677849 4198139 complement(445966..447444) 1 NC_008209.1 hypothetical protein 447444 4198139 RD1_0457 Roseobacter denitrificans OCh 114 hypothetical protein YP_680856.1 445966 R 375451 CDS YP_680857.1 110677850 4198141 449092..449715 1 NC_008209.1 SenC protein 449715 senC 4198141 senC Roseobacter denitrificans OCh 114 SenC protein YP_680857.1 449092 D 375451 CDS YP_680858.1 110677851 4198142 449812..450366 1 NC_008209.1 photosynthetic apparatus regulatory protein 450366 regA 4198142 regA Roseobacter denitrificans OCh 114 photosynthetic apparatus regulatory protein YP_680858.1 449812 D 375451 CDS YP_680859.1 110677852 4198143 complement(450480..451067) 1 NC_008209.1 hypothetical protein 451067 4198143 RD1_0463 Roseobacter denitrificans OCh 114 hypothetical protein YP_680859.1 450480 R 375451 CDS YP_680860.1 110677853 4198144 complement(451064..452053) 1 NC_008209.1 lipopolysaccharide 1,3-galactosyltransferase 452053 rfaI 4198144 rfaI Roseobacter denitrificans OCh 114 lipopolysaccharide 1,3-galactosyltransferase YP_680860.1 451064 R 375451 CDS YP_680861.1 110677854 4198145 452305..453693 1 NC_008209.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 453693 ahcY 4198145 ahcY Roseobacter denitrificans OCh 114 S-adenosyl-L-homocysteine hydrolase YP_680861.1 452305 D 375451 CDS YP_680862.1 110677855 4198146 453868..454233 1 NC_008209.1 hypothetical protein 454233 4198146 RD1_0466 Roseobacter denitrificans OCh 114 hypothetical protein YP_680862.1 453868 D 375451 CDS YP_680863.1 110677856 4198147 complement(454710..455132) 1 NC_008209.1 hypothetical protein 455132 4198147 RD1_0467 Roseobacter denitrificans OCh 114 hypothetical protein YP_680863.1 454710 R 375451 CDS YP_680864.1 110677857 4198148 complement(455132..455404) 1 NC_008209.1 hypothetical protein 455404 4198148 RD1_0468 Roseobacter denitrificans OCh 114 hypothetical protein YP_680864.1 455132 R 375451 CDS YP_680865.1 110677858 4198149 complement(455406..456368) 1 NC_008209.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 456368 gpsA 4198149 gpsA Roseobacter denitrificans OCh 114 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_680865.1 455406 R 375451 CDS YP_680866.1 110677859 4198150 complement(456365..457462) 1 NC_008209.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 457462 gcp 4198150 gcp Roseobacter denitrificans OCh 114 DNA-binding/iron metalloprotein/AP endonuclease YP_680866.1 456365 R 375451 CDS YP_680867.1 110677860 4198151 457543..458247 1 NC_008209.1 uroporphyrinogen-III synthase 458247 hemD 4198151 hemD Roseobacter denitrificans OCh 114 uroporphyrinogen-III synthase YP_680867.1 457543 D 375451 CDS YP_680868.1 110677861 4198152 458308..459795 1 NC_008209.1 hypothetical protein 459795 4198152 RD1_0472 Roseobacter denitrificans OCh 114 hypothetical protein YP_680868.1 458308 D 375451 CDS YP_680869.1 110677862 4198153 459807..461285 1 NC_008209.1 hypothetical protein 461285 4198153 RD1_0473 Roseobacter denitrificans OCh 114 hypothetical protein YP_680869.1 459807 D 375451 CDS YP_680870.1 110677863 4198154 complement(461337..462164) 1 NC_008209.1 hypothetical protein 462164 4198154 RD1_0474 Roseobacter denitrificans OCh 114 hypothetical protein YP_680870.1 461337 R 375451 CDS YP_680871.1 110677864 4198155 462237..463301 1 NC_008209.1 beta-carotene ketolase 463301 4198155 RD1_0475 Roseobacter denitrificans OCh 114 beta-carotene ketolase YP_680871.1 462237 D 375451 CDS YP_680872.1 110677865 4198156 463338..464144 1 NC_008209.1 enoyl-CoA hydratase/isomerase family protein 464144 4198156 RD1_0476 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase/isomerase family protein YP_680872.1 463338 D 375451 CDS YP_680873.1 110677866 4198157 complement(464214..465290) 1 NC_008209.1 hypothetical protein 465290 4198157 RD1_0477 Roseobacter denitrificans OCh 114 hypothetical protein YP_680873.1 464214 R 375451 CDS YP_680874.1 110677867 4198236 465491..466639 1 NC_008209.1 hypothetical protein 466639 4198236 RD1_0478 Roseobacter denitrificans OCh 114 hypothetical protein YP_680874.1 465491 D 375451 CDS YP_680875.1 110677868 4198237 complement(466790..470086) 1 NC_008209.1 calcium binding hemolysin 470086 4198237 RD1_0479 Roseobacter denitrificans OCh 114 calcium binding hemolysin YP_680875.1 466790 R 375451 CDS YP_680876.1 110677869 4198238 complement(470358..471020) 1 NC_008209.1 hypothetical protein 471020 4198238 RD1_0481 Roseobacter denitrificans OCh 114 hypothetical protein YP_680876.1 470358 R 375451 CDS YP_680877.1 110677870 4198239 complement(471056..471460) 1 NC_008209.1 hypothetical protein 471460 4198239 RD1_0482 Roseobacter denitrificans OCh 114 hypothetical protein YP_680877.1 471056 R 375451 CDS YP_680878.1 110677871 4198240 complement(471677..472846) 1 NC_008209.1 hypothetical protein 472846 4198240 RD1_0483 Roseobacter denitrificans OCh 114 hypothetical protein YP_680878.1 471677 R 375451 CDS YP_680879.1 110677872 4198241 complement(472862..473674) 1 NC_008209.1 myo-inositol catabolism protein IolB 473674 iolB 4198241 iolB Roseobacter denitrificans OCh 114 myo-inositol catabolism protein IolB YP_680879.1 472862 R 375451 CDS YP_680880.1 110677873 4198242 complement(473671..474465) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 474465 4198242 RD1_0486 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_680880.1 473671 R 375451 CDS YP_680881.1 110677874 4198243 complement(474467..475567) 1 NC_008209.1 sugar ABC transporter permease 475567 4198243 RD1_0487 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_680881.1 474467 R 375451 CDS YP_680882.1 110677875 4198244 complement(475630..476556) 1 NC_008209.1 sugar ABC transporter substrate-binding protein 476556 4198244 RD1_0488 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_680882.1 475630 R 375451 CDS YP_680883.1 110677876 4198245 476714..477712 1 NC_008209.1 LacI family transcriptional regulator 477712 4198245 RD1_0490 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_680883.1 476714 D 375451 CDS YP_680884.1 110677877 4198246 477955..478242 1 NC_008209.1 hypothetical protein 478242 4198246 RD1_0491 Roseobacter denitrificans OCh 114 hypothetical protein YP_680884.1 477955 D 375451 CDS YP_680885.1 110677878 4198247 complement(478389..479048) 1 NC_008209.1 ErfK/YbiS/YcfS/YnhG family protein 479048 4198247 RD1_0492 Roseobacter denitrificans OCh 114 ErfK/YbiS/YcfS/YnhG family protein YP_680885.1 478389 R 375451 CDS YP_680886.1 110677879 4198248 complement(479172..479681) 1 NC_008209.1 hypothetical protein 479681 4198248 RD1_0493 Roseobacter denitrificans OCh 114 hypothetical protein YP_680886.1 479172 R 375451 CDS YP_680887.1 110677880 4198249 complement(479855..480766) 1 NC_008209.1 hypothetical protein 480766 4198249 RD1_0494 Roseobacter denitrificans OCh 114 hypothetical protein YP_680887.1 479855 R 375451 CDS YP_680888.1 110677881 4198250 complement(480774..481628) 1 NC_008209.1 hypothetical protein 481628 4198250 RD1_0495 Roseobacter denitrificans OCh 114 hypothetical protein YP_680888.1 480774 R 375451 CDS YP_680889.1 110677882 4198251 481757..482263 1 NC_008209.1 hypothetical protein 482263 4198251 RD1_0496 Roseobacter denitrificans OCh 114 hypothetical protein YP_680889.1 481757 D 375451 CDS YP_680890.1 110677883 4198252 complement(482746..483201) 1 NC_008209.1 hypothetical protein 483201 4198252 RD1_0497 Roseobacter denitrificans OCh 114 hypothetical protein YP_680890.1 482746 R 375451 CDS YP_680891.1 110677884 4198253 483527..485047 1 NC_008209.1 hypothetical protein 485047 4198253 RD1_0498 Roseobacter denitrificans OCh 114 hypothetical protein YP_680891.1 483527 D 375451 CDS YP_680892.1 110677885 4198254 complement(485058..485819) 1 NC_008209.1 hypothetical protein 485819 4198254 RD1_0499 Roseobacter denitrificans OCh 114 hypothetical protein YP_680892.1 485058 R 375451 CDS YP_680893.1 110677886 4197811 486154..486681 1 NC_008209.1 hypothetical protein 486681 4197811 RD1_0500 Roseobacter denitrificans OCh 114 hypothetical protein YP_680893.1 486154 D 375451 CDS YP_680894.1 110677887 4197812 486633..488504 1 NC_008209.1 cyclase 488504 4197812 RD1_0501 Roseobacter denitrificans OCh 114 cyclase YP_680894.1 486633 D 375451 CDS YP_680895.1 110677888 4197813 complement(488501..489358) 1 NC_008209.1 hypothetical protein 489358 4197813 RD1_0502 Roseobacter denitrificans OCh 114 hypothetical protein YP_680895.1 488501 R 375451 CDS YP_680896.1 110677889 4197814 complement(489358..490521) 1 NC_008209.1 hypothetical protein 490521 4197814 RD1_0503 Roseobacter denitrificans OCh 114 hypothetical protein YP_680896.1 489358 R 375451 CDS YP_680897.1 110677890 4197815 complement(490518..491285) 1 NC_008209.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 491285 4197815 RD1_0504 Roseobacter denitrificans OCh 114 3-ketoacyl-ACP reductase YP_680897.1 490518 R 375451 CDS YP_680898.1 110677891 4197816 complement(491282..492427) 1 NC_008209.1 acyl-CoA dehydrogenase 492427 mmgC 4197816 mmgC Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_680898.1 491282 R 375451 CDS YP_680899.1 110677892 4197817 492572..493588 1 NC_008209.1 oxidoreductase 493588 4197817 RD1_0506 Roseobacter denitrificans OCh 114 oxidoreductase YP_680899.1 492572 D 375451 CDS YP_680900.1 110677893 4197818 493585..494031 1 NC_008209.1 MaoC-like protein 494031 4197818 RD1_0507 Roseobacter denitrificans OCh 114 MaoC-like protein YP_680900.1 493585 D 375451 CDS YP_680901.1 110677894 4197819 complement(494141..494452) 1 NC_008209.1 hypothetical protein 494452 4197819 RD1_0508 Roseobacter denitrificans OCh 114 hypothetical protein YP_680901.1 494141 R 375451 CDS YP_680902.1 110677895 4197820 complement(494465..495220) 1 NC_008209.1 enoyl-CoA hydratase/isomerase family protein 495220 4197820 RD1_0509 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase/isomerase family protein YP_680902.1 494465 R 375451 CDS YP_680903.1 110677896 4197821 complement(495217..496800) 1 NC_008209.1 propionate CoA-transferase 496800 pct 4197821 pct Roseobacter denitrificans OCh 114 propionate CoA-transferase YP_680903.1 495217 R 375451 CDS YP_680904.1 110677897 4197822 496950..497768 1 NC_008209.1 2,5-diketo-D-gluconate reductase B 497768 dkgB 4197822 dkgB Roseobacter denitrificans OCh 114 2,5-diketo-D-gluconate reductase B YP_680904.1 496950 D 375451 CDS YP_680905.1 110677898 4197823 complement(497788..499392) 1 NC_008209.1 choline dehydrogenase 499392 betA 4197823 betA Roseobacter denitrificans OCh 114 choline dehydrogenase YP_680905.1 497788 R 375451 CDS YP_680906.1 110677899 4197824 complement(499571..500140) 1 NC_008209.1 hypothetical protein 500140 4197824 RD1_0513 Roseobacter denitrificans OCh 114 hypothetical protein YP_680906.1 499571 R 375451 CDS YP_680907.1 110677900 4197825 complement(500156..501184) 1 NC_008209.1 sorbitol dehydrogenase 501184 gutB 4197825 gutB Roseobacter denitrificans OCh 114 sorbitol dehydrogenase YP_680907.1 500156 R 375451 CDS YP_680908.1 110677901 4197826 501353..502024 1 NC_008209.1 TetR family transcriptional regulator 502024 4197826 RD1_0515 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_680908.1 501353 D 375451 CDS YP_680909.1 110677902 4197827 complement(502021..502146) 1 NC_008209.1 hypothetical protein 502146 4197827 RD1_0516 Roseobacter denitrificans OCh 114 hypothetical protein YP_680909.1 502021 R 375451 CDS YP_680910.1 110677903 4197828 complement(502143..503246) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 503246 4197828 RD1_0517 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_680910.1 502143 R 375451 CDS YP_680911.1 110677904 4197829 complement(503250..504131) 1 NC_008209.1 sugar ABC transporter permease 504131 4197829 RD1_0518 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_680911.1 503250 R 375451 CDS YP_680912.1 110677905 4197830 complement(504131..505024) 1 NC_008209.1 sugar ABC transporter permease 505024 4197830 RD1_0519 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_680912.1 504131 R 375451 CDS YP_680913.1 110677906 4197792 complement(505080..506330) 1 NC_008209.1 sugar ABC transporter substrate-binding protein 506330 4197792 RD1_0521 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_680913.1 505080 R 375451 CDS YP_680914.1 110677907 4197793 complement(506487..508424) 1 NC_008209.1 hypothetical protein 508424 4197793 RD1_0522 Roseobacter denitrificans OCh 114 hypothetical protein YP_680914.1 506487 R 375451 CDS YP_680915.1 110677908 4197794 complement(508443..509720) 1 NC_008209.1 hypothetical protein 509720 4197794 RD1_0524 Roseobacter denitrificans OCh 114 hypothetical protein YP_680915.1 508443 R 375451 CDS YP_680916.1 110677909 4197795 complement(509717..511261) 1 NC_008209.1 hypothetical protein 511261 4197795 RD1_0525 Roseobacter denitrificans OCh 114 hypothetical protein YP_680916.1 509717 R 375451 CDS YP_680917.1 110677910 4197796 complement(511261..512244) 1 NC_008209.1 hypothetical protein 512244 4197796 RD1_0526 Roseobacter denitrificans OCh 114 hypothetical protein YP_680917.1 511261 R 375451 CDS YP_680918.1 110677911 4197797 complement(512241..512729) 1 NC_008209.1 hypothetical protein 512729 4197797 RD1_0527 Roseobacter denitrificans OCh 114 hypothetical protein YP_680918.1 512241 R 375451 CDS YP_680919.1 110677912 4197798 complement(512726..513709) 1 NC_008209.1 hypothetical protein 513709 4197798 RD1_0528 Roseobacter denitrificans OCh 114 hypothetical protein YP_680919.1 512726 R 375451 CDS YP_680920.1 110677913 4197799 complement(513720..514709) 1 NC_008209.1 MoxR-like ATPase 514709 moxR 4197799 moxR Roseobacter denitrificans OCh 114 MoxR-like ATPase YP_680920.1 513720 R 375451 CDS YP_680921.1 110677914 4197800 complement(514706..515662) 1 NC_008209.1 nonspecific acid phosphatase 515662 napD 4197800 napD Roseobacter denitrificans OCh 114 nonspecific acid phosphatase YP_680921.1 514706 R 375451 CDS YP_680922.1 110677915 4197801 complement(515751..517349) 1 NC_008209.1 arylsulfatase 517349 4197801 RD1_0531 Roseobacter denitrificans OCh 114 arylsulfatase YP_680922.1 515751 R 375451 CDS YP_680923.1 110677916 4197802 complement(517512..517958) 1 NC_008209.1 carbon monoxide dehydrogenase G protein 517958 coxG 4197802 coxG Roseobacter denitrificans OCh 114 carbon monoxide dehydrogenase G protein YP_680923.1 517512 R 375451 CDS YP_680924.1 110677917 4197803 complement(518053..518931) 1 NC_008209.1 metallo-beta-lactamase family protein 518931 4197803 RD1_0533 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_680924.1 518053 R 375451 CDS YP_680925.1 110677918 4197804 complement(518992..519393) 1 NC_008209.1 hypothetical protein 519393 4197804 RD1_0534 Roseobacter denitrificans OCh 114 hypothetical protein YP_680925.1 518992 R 375451 CDS YP_680926.1 110677919 4197805 complement(519428..520498) 1 NC_008209.1 amine oxidase 520498 4197805 RD1_0535 Roseobacter denitrificans OCh 114 amine oxidase YP_680926.1 519428 R 375451 CDS YP_680927.1 110677920 4197806 complement(520495..521172) 1 NC_008209.1 transcription negative regulator 521172 chrR 4197806 chrR Roseobacter denitrificans OCh 114 transcription negative regulator YP_680927.1 520495 R 375451 CDS YP_680928.1 110677921 4197807 521314..522093 1 NC_008209.1 creatinine amidohydrolase 522093 4197807 RD1_0537 Roseobacter denitrificans OCh 114 creatinine amidohydrolase YP_680928.1 521314 D 375451 CDS YP_680929.1 110677922 4197808 522162..522704 1 NC_008209.1 hydrolase 522704 4197808 RD1_0538 Roseobacter denitrificans OCh 114 hydrolase YP_680929.1 522162 D 375451 CDS YP_680930.1 110677923 4197809 complement(522774..523604) 1 NC_008209.1 hypothetical protein 523604 4197809 RD1_0539 Roseobacter denitrificans OCh 114 hypothetical protein YP_680930.1 522774 R 375451 CDS YP_680931.1 110677924 4197810 523935..525065 1 NC_008209.1 ABC transporter substrate-binding protein 525065 4197810 RD1_0540 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_680931.1 523935 D 375451 CDS YP_680932.1 110677925 4197772 525117..526037 1 NC_008209.1 branched-chain amino acid ABC transporter permease 526037 4197772 RD1_0541 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_680932.1 525117 D 375451 CDS YP_680933.1 110677926 4197773 526037..527017 1 NC_008209.1 branched-chain amino acid ABC transporter permease 527017 4197773 RD1_0542 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_680933.1 526037 D 375451 CDS YP_680934.1 110677927 4197774 527010..527759 1 NC_008209.1 ABC transporter 527759 4197774 RD1_0543 Roseobacter denitrificans OCh 114 ABC transporter YP_680934.1 527010 D 375451 CDS YP_680935.1 110677928 4197775 527756..528442 1 NC_008209.1 ABC transporter ATP-binding protein 528442 4197775 RD1_0544 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_680935.1 527756 D 375451 CDS YP_680936.1 110677929 4197776 complement(528533..529450) 1 NC_008209.1 glyoxylase 529450 4197776 RD1_0545 Roseobacter denitrificans OCh 114 glyoxylase YP_680936.1 528533 R 375451 CDS YP_680937.1 110677930 4197777 529666..531387 1 NC_008209.1 long-chain-fatty-acid--CoA ligase 531387 fadD 4197777 fadD Roseobacter denitrificans OCh 114 long-chain-fatty-acid--CoA ligase YP_680937.1 529666 D 375451 CDS YP_680938.1 110677931 4197778 531393..532274 1 NC_008209.1 sodium/bile acid symporter family protein 532274 4197778 RD1_0547 Roseobacter denitrificans OCh 114 sodium/bile acid symporter family protein YP_680938.1 531393 D 375451 CDS YP_680939.1 110677932 4197779 complement(532374..534302) 1 NC_008209.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 534302 dxs 4197779 dxs Roseobacter denitrificans OCh 114 1-deoxy-D-xylulose-5-phosphate synthase YP_680939.1 532374 R 375451 CDS YP_680940.1 110677933 4197780 complement(534312..535181) 1 NC_008209.1 geranyltranstransferase 535181 ispA 4197780 ispA Roseobacter denitrificans OCh 114 geranyltranstransferase YP_680940.1 534312 R 375451 CDS YP_680941.1 110677934 4197781 complement(535185..535445) 1 NC_008209.1 exodeoxyribonuclease VII small subunit 535445 xseB 4197781 xseB Roseobacter denitrificans OCh 114 exodeoxyribonuclease VII small subunit YP_680941.1 535185 R 375451 CDS YP_680942.1 110677935 4197782 complement(535521..536222) 1 NC_008209.1 DNA-binding response regulator PetR 536222 petR 4197782 petR Roseobacter denitrificans OCh 114 DNA-binding response regulator PetR YP_680942.1 535521 R 375451 CDS YP_680943.1 110677936 4197783 complement(536219..536731) 1 NC_008209.1 MarR family transcriptional regulator 536731 marR 4197783 marR Roseobacter denitrificans OCh 114 MarR family transcriptional regulator YP_680943.1 536219 R 375451 CDS YP_680944.1 110677937 4197784 536900..537769 1 NC_008209.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 537769 ilvE 4197784 ilvE Roseobacter denitrificans OCh 114 branched-chain amino acid aminotransferase YP_680944.1 536900 D 375451 CDS YP_680945.1 110677938 4197785 537729..538130 1 NC_008209.1 hypothetical protein 538130 4197785 RD1_0554 Roseobacter denitrificans OCh 114 hypothetical protein YP_680945.1 537729 D 375451 CDS YP_680946.1 110677939 4197786 complement(538166..539140) 1 NC_008209.1 hypothetical protein 539140 4197786 RD1_0555 Roseobacter denitrificans OCh 114 hypothetical protein YP_680946.1 538166 R 375451 CDS YP_680947.1 110677940 4197787 complement(539207..540307) 1 NC_008209.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 540307 aroC 4197787 aroC Roseobacter denitrificans OCh 114 chorismate synthase YP_680947.1 539207 R 375451 CDS YP_680948.1 110677941 4197788 540540..541520 1 NC_008209.1 thiamin ABC transporter substrate-binding protein 541520 4197788 RD1_0557 Roseobacter denitrificans OCh 114 thiamin ABC transporter substrate-binding protein YP_680948.1 540540 D 375451 CDS YP_680949.1 110677942 4197789 541496..543052 1 NC_008209.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 543052 thiP 4197789 thiP Roseobacter denitrificans OCh 114 thiamine transporter membrane protein YP_680949.1 541496 D 375451 CDS YP_680950.1 110677943 4197790 complement(543269..543583) 1 NC_008209.1 hypothetical protein 543583 4197790 RD1_0559 Roseobacter denitrificans OCh 114 hypothetical protein YP_680950.1 543269 R 375451 CDS YP_680951.1 110677944 4197791 complement(543831..544277) 1 NC_008209.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 544277 ribH 4197791 ribH Roseobacter denitrificans OCh 114 riboflavin synthase subunit beta YP_680951.1 543831 R 375451 CDS YP_680952.1 110677945 4197753 544574..545200 1 NC_008209.1 transcriptional regulator 545200 4197753 RD1_0561 Roseobacter denitrificans OCh 114 transcriptional regulator YP_680952.1 544574 D 375451 CDS YP_680953.1 110677946 4197754 545243..545845 1 NC_008209.1 glutathione S-transferase family protein 545845 4197754 RD1_0562 Roseobacter denitrificans OCh 114 glutathione S-transferase family protein YP_680953.1 545243 D 375451 CDS YP_680954.1 110677947 4197755 546052..546612 1 NC_008209.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit 546612 petA 4197755 petA Roseobacter denitrificans OCh 114 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_680954.1 546052 D 375451 CDS YP_680955.1 110677948 4197756 546625..547968 1 NC_008209.1 cytochrome b 547968 petB 4197756 petB Roseobacter denitrificans OCh 114 cytochrome b YP_680955.1 546625 D 375451 CDS YP_680956.1 110677949 4197757 547983..548771 1 NC_008209.1 cytochrome c1 548771 petC 4197757 petC Roseobacter denitrificans OCh 114 cytochrome c1 YP_680956.1 547983 D 375451 CDS YP_680957.1 110677950 4197758 549751..550899 1 NC_008209.1 hypothetical protein 550899 4197758 RD1_0566 Roseobacter denitrificans OCh 114 hypothetical protein YP_680957.1 549751 D 375451 CDS YP_680958.1 110677951 4197759 complement(551138..552769) 1 NC_008209.1 hypothetical protein 552769 4197759 RD1_0567 Roseobacter denitrificans OCh 114 hypothetical protein YP_680958.1 551138 R 375451 CDS YP_680959.1 110677952 4197760 553097..554263 1 NC_008209.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 554263 4197760 RD1_0568 Roseobacter denitrificans OCh 114 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_680959.1 553097 D 375451 CDS YP_680960.1 110677953 4197761 554268..555290 1 NC_008209.1 sulfotransferase domain-containing protein 555290 4197761 RD1_0569 Roseobacter denitrificans OCh 114 sulfotransferase domain-containing protein YP_680960.1 554268 D 375451 CDS YP_680961.1 110677954 4197762 555377..556240 1 NC_008209.1 hypothetical protein 556240 4197762 RD1_0570 Roseobacter denitrificans OCh 114 hypothetical protein YP_680961.1 555377 D 375451 CDS YP_680962.1 110677955 4197763 556309..557007 1 NC_008209.1 hypothetical protein 557007 4197763 RD1_0571 Roseobacter denitrificans OCh 114 hypothetical protein YP_680962.1 556309 D 375451 CDS YP_680963.1 110677956 4197764 557015..558109 1 NC_008209.1 hypothetical protein 558109 4197764 RD1_0572 Roseobacter denitrificans OCh 114 hypothetical protein YP_680963.1 557015 D 375451 CDS YP_680964.1 110677957 4197765 558164..559039 1 NC_008209.1 hypothetical protein 559039 4197765 RD1_0573 Roseobacter denitrificans OCh 114 hypothetical protein YP_680964.1 558164 D 375451 CDS YP_680965.1 110677958 4197766 559039..559965 1 NC_008209.1 glycosyl transferase family protein 559965 4197766 RD1_0575 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_680965.1 559039 D 375451 CDS YP_680966.1 110677959 4197767 560565..560699 1 NC_008209.1 hypothetical protein 560699 4197767 RD1_0576 Roseobacter denitrificans OCh 114 hypothetical protein YP_680966.1 560565 D 375451 CDS YP_680967.1 110677960 4197768 complement(560806..561909) 1 NC_008209.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 561909 flgI 4197768 flgI Roseobacter denitrificans OCh 114 flagellar basal body P-ring protein YP_680967.1 560806 R 375451 CDS YP_680968.1 110677961 4197769 complement(561906..562910) 1 NC_008209.1 flagellar hook-associated protein 562910 flgL 4197769 flgL Roseobacter denitrificans OCh 114 flagellar hook-associated protein YP_680968.1 561906 R 375451 CDS YP_680969.1 110677962 4197770 complement(562914..564359) 1 NC_008209.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 564359 flgK 4197770 flgK Roseobacter denitrificans OCh 114 flagellar hook-associated protein FlgK YP_680969.1 562914 R 375451 CDS YP_680970.1 110677963 4197771 complement(564404..565714) 1 NC_008209.1 flagellar hook protein FlgE 565714 flgE 4197771 flgE Roseobacter denitrificans OCh 114 flagellar hook protein FlgE YP_680970.1 564404 R 375451 CDS YP_680971.1 110677964 4196209 complement(565815..566654) 1 NC_008209.1 chemotaxis protein MotB 566654 motB 4196209 motB Roseobacter denitrificans OCh 114 chemotaxis protein MotB YP_680971.1 565815 R 375451 CDS YP_680972.1 110677965 4196210 complement(566835..567725) 1 NC_008209.1 hypothetical protein 567725 4196210 RD1_0584 Roseobacter denitrificans OCh 114 hypothetical protein YP_680972.1 566835 R 375451 CDS YP_680973.1 110677966 4196211 567843..568451 1 NC_008209.1 pyrazinamidase/nicotinamidase 568451 pncA 4196211 pncA Roseobacter denitrificans OCh 114 pyrazinamidase/nicotinamidase YP_680973.1 567843 D 375451 CDS YP_680974.1 110677967 4196212 568444..569736 1 NC_008209.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 569736 pncB 4196212 pncB Roseobacter denitrificans OCh 114 nicotinate phosphoribosyltransferase YP_680974.1 568444 D 375451 CDS YP_680975.1 110677968 4196213 569800..569898 1 NC_008209.1 hypothetical protein 569898 4196213 RD1_0587 Roseobacter denitrificans OCh 114 hypothetical protein YP_680975.1 569800 D 375451 CDS YP_680976.1 110677969 4196214 569981..570145 1 NC_008209.1 hypothetical protein 570145 4196214 RD1_0589 Roseobacter denitrificans OCh 114 hypothetical protein YP_680976.1 569981 D 375451 CDS YP_680977.1 110677970 4196215 570328..570432 1 NC_008209.1 hypothetical protein 570432 4196215 RD1_0590 Roseobacter denitrificans OCh 114 hypothetical protein YP_680977.1 570328 D 375451 CDS YP_680978.1 110677971 4196216 570864..571034 1 NC_008209.1 hypothetical protein 571034 4196216 RD1_0591 Roseobacter denitrificans OCh 114 hypothetical protein YP_680978.1 570864 D 375451 CDS YP_680979.1 110677972 4196217 complement(571339..572700) 1 NC_008209.1 HlyD family secretion protein 572700 4196217 RD1_0592 Roseobacter denitrificans OCh 114 HlyD family secretion protein YP_680979.1 571339 R 375451 CDS YP_680980.1 110677973 4196218 complement(572702..574939) 1 NC_008209.1 cyclosin secreting ABC transporter ATP binding protein 574939 4196218 RD1_0593 Roseobacter denitrificans OCh 114 cyclosin secreting ABC transporter ATP binding protein YP_680980.1 572702 R 375451 CDS YP_680981.1 110677974 4196219 complement(574936..576594) 1 NC_008209.1 ABC transporter ATP-binding protein 576594 4196219 RD1_0594 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_680981.1 574936 R 375451 CDS YP_680982.1 110677975 4196220 complement(576660..579725) 1 NC_008209.1 type I secretion target domain-containing protein 579725 4196220 RD1_0595 Roseobacter denitrificans OCh 114 type I secretion target domain-containing protein YP_680982.1 576660 R 375451 CDS YP_680983.1 110677976 4196221 complement(579855..580376) 1 NC_008209.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 580376 msrA 4196221 msrA Roseobacter denitrificans OCh 114 methionine sulfoxide reductase A YP_680983.1 579855 R 375451 CDS YP_680984.1 110677977 4196222 complement(580373..580822) 1 NC_008209.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 580822 msrB 4196222 msrB Roseobacter denitrificans OCh 114 methionine sulfoxide reductase B YP_680984.1 580373 R 375451 CDS YP_680985.1 110677978 4196223 580959..581507 1 NC_008209.1 glutathione peroxidase 581507 gpo 4196223 gpo Roseobacter denitrificans OCh 114 glutathione peroxidase YP_680985.1 580959 D 375451 CDS YP_680986.1 110677979 4196224 581511..582152 1 NC_008209.1 hypothetical protein 582152 4196224 RD1_0600 Roseobacter denitrificans OCh 114 hypothetical protein YP_680986.1 581511 D 375451 CDS YP_680987.1 110677980 4196225 complement(582199..583068) 1 NC_008209.1 hypothetical protein 583068 4196225 RD1_0601 Roseobacter denitrificans OCh 114 hypothetical protein YP_680987.1 582199 R 375451 CDS YP_680988.1 110677981 4196226 583203..583832 1 NC_008209.1 amino acid transporter LysE 583832 4196226 RD1_0602 Roseobacter denitrificans OCh 114 amino acid transporter LysE YP_680988.1 583203 D 375451 CDS YP_680989.1 110677982 4196227 complement(583987..584274) 1 NC_008209.1 DNA-binding protein HU 584274 hup 4196227 hup Roseobacter denitrificans OCh 114 DNA-binding protein HU YP_680989.1 583987 R 375451 CDS YP_680990.1 110677983 4196228 complement(584412..585875) 1 NC_008209.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 585875 amn 4196228 amn Roseobacter denitrificans OCh 114 AMP nucleosidase YP_680990.1 584412 R 375451 CDS YP_680991.1 110677984 4198369 complement(585872..587674) 1 NC_008209.1 adenine deaminase 587674 ade 4198369 ade Roseobacter denitrificans OCh 114 adenine deaminase YP_680991.1 585872 R 375451 CDS YP_680992.1 110677985 4198370 587725..588144 1 NC_008209.1 hypothetical protein 588144 4198370 RD1_0606 Roseobacter denitrificans OCh 114 hypothetical protein YP_680992.1 587725 D 375451 CDS YP_680993.1 110677986 4198371 588521..590956 1 NC_008209.1 dimethylglycine dehydrogenase 590956 4198371 RD1_0607 Roseobacter denitrificans OCh 114 dimethylglycine dehydrogenase YP_680993.1 588521 D 375451 CDS YP_680994.1 110677987 4198372 complement(590923..591102) 1 NC_008209.1 hypothetical protein 591102 4198372 RD1_0608 Roseobacter denitrificans OCh 114 hypothetical protein YP_680994.1 590923 R 375451 CDS YP_680995.1 110677988 4198373 591117..591872 1 NC_008209.1 hypothetical protein 591872 4198373 RD1_0609 Roseobacter denitrificans OCh 114 hypothetical protein YP_680995.1 591117 D 375451 CDS YP_680996.1 110677989 4198374 591862..592851 1 NC_008209.1 sterol desaturase 592851 4198374 RD1_0610 Roseobacter denitrificans OCh 114 sterol desaturase YP_680996.1 591862 D 375451 CDS YP_680997.1 110677990 4198375 592957..594120 1 NC_008209.1 acyl-CoA dehydrogenase 594120 acdA 4198375 acdA Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_680997.1 592957 D 375451 CDS YP_680998.1 110677991 4198376 594183..596213 1 NC_008209.1 acyl-CoA synthetase 596213 4198376 RD1_0612 Roseobacter denitrificans OCh 114 acyl-CoA synthetase YP_680998.1 594183 D 375451 CDS YP_680999.1 110677992 4198377 596200..596979 1 NC_008209.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 596979 caiD 4198377 caiD Roseobacter denitrificans OCh 114 carnitinyl-CoA dehydratase YP_680999.1 596200 D 375451 CDS YP_681000.1 110677993 4198378 597019..597864 1 NC_008209.1 hypothetical protein 597864 4198378 RD1_0614 Roseobacter denitrificans OCh 114 hypothetical protein YP_681000.1 597019 D 375451 CDS YP_681001.1 110677994 4198379 complement(597982..598626) 1 NC_008209.1 hypothetical protein 598626 4198379 RD1_0615 Roseobacter denitrificans OCh 114 hypothetical protein YP_681001.1 597982 R 375451 CDS YP_681002.1 110677995 4198380 complement(598888..600294) 1 NC_008209.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 600294 leuC 4198380 leuC Roseobacter denitrificans OCh 114 isopropylmalate isomerase large subunit YP_681002.1 598888 R 375451 CDS YP_681003.1 110677996 4198381 complement(600339..600485) 1 NC_008209.1 hypothetical protein 600485 4198381 RD1_0617 Roseobacter denitrificans OCh 114 hypothetical protein YP_681003.1 600339 R 375451 CDS YP_681004.1 110677997 4198382 600528..601844 1 NC_008209.1 mechanosensitive ion channel protein 601844 4198382 RD1_0618 Roseobacter denitrificans OCh 114 mechanosensitive ion channel protein YP_681004.1 600528 D 375451 CDS YP_681005.1 110677998 4198383 601916..602656 1 NC_008209.1 hypothetical protein 602656 4198383 RD1_0619 Roseobacter denitrificans OCh 114 hypothetical protein YP_681005.1 601916 D 375451 CDS YP_681006.1 110677999 4198384 602813..603181 1 NC_008209.1 iojap family protein 603181 4198384 RD1_0620 Roseobacter denitrificans OCh 114 iojap family protein YP_681006.1 602813 D 375451 CDS YP_681007.1 110678000 4198385 603197..603667 1 NC_008209.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 603667 4198385 RD1_0621 Roseobacter denitrificans OCh 114 rRNA large subunit methyltransferase YP_681007.1 603197 D 375451 CDS YP_681008.1 110678001 4198386 complement(603688..604272) 1 NC_008209.1 hypothetical protein 604272 4198386 RD1_0622 Roseobacter denitrificans OCh 114 hypothetical protein YP_681008.1 603688 R 375451 CDS YP_681009.1 110678002 4198387 complement(604372..604746) 1 NC_008209.1 hypothetical protein 604746 4198387 RD1_0623 Roseobacter denitrificans OCh 114 hypothetical protein YP_681009.1 604372 R 375451 CDS YP_681010.1 110678003 4198216 complement(604759..605457) 1 NC_008209.1 hypothetical protein 605457 4198216 RD1_0624 Roseobacter denitrificans OCh 114 hypothetical protein YP_681010.1 604759 R 375451 CDS YP_681011.1 110678004 4198217 605531..606985 1 NC_008209.1 glycolate oxidase subunit GlcD 606985 glcD 4198217 glcD Roseobacter denitrificans OCh 114 glycolate oxidase subunit GlcD YP_681011.1 605531 D 375451 CDS YP_681012.1 110678005 4198218 607037..608182 1 NC_008209.1 glycolate oxidase, subunit GlcE 608182 glcE 4198218 glcE Roseobacter denitrificans OCh 114 glycolate oxidase, subunit GlcE YP_681012.1 607037 D 375451 CDS YP_681013.1 110678006 4198219 608182..609507 1 NC_008209.1 glycolate oxidase, iron-sulfur subunit 609507 glcF 4198219 glcF Roseobacter denitrificans OCh 114 glycolate oxidase, iron-sulfur subunit YP_681013.1 608182 D 375451 CDS YP_681014.1 110678007 4198220 609598..610419 1 NC_008209.1 trypsin domain-containing protein 610419 4198220 RD1_0628 Roseobacter denitrificans OCh 114 trypsin domain-containing protein YP_681014.1 609598 D 375451 CDS YP_681015.1 110678008 4198221 610631..611098 1 NC_008209.1 HSP20 family protein 611098 ibpA 4198221 ibpA Roseobacter denitrificans OCh 114 HSP20 family protein YP_681015.1 610631 D 375451 CDS YP_681016.1 110678009 4198222 complement(611188..611400) 1 NC_008209.1 hypothetical protein 611400 4198222 RD1_0630 Roseobacter denitrificans OCh 114 hypothetical protein YP_681016.1 611188 R 375451 CDS YP_681017.1 110678010 4198223 complement(611397..612698) 1 NC_008209.1 ABC transporter substrate-binding protein 612698 4198223 RD1_0631 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681017.1 611397 R 375451 CDS YP_681018.1 110678011 4198224 612813..614213 1 NC_008209.1 flavin-containing monooxygenase 614213 4198224 RD1_0632 Roseobacter denitrificans OCh 114 flavin-containing monooxygenase YP_681018.1 612813 D 375451 CDS YP_681019.1 110678012 4198225 complement(614461..615888) 1 NC_008209.1 aldehyde dehydrogenase 615888 ald 4198225 ald Roseobacter denitrificans OCh 114 aldehyde dehydrogenase YP_681019.1 614461 R 375451 CDS YP_681020.1 110678013 4198226 616042..616695 1 NC_008209.1 anti-oxidant AhpCTSA family protein 616695 4198226 RD1_0634 Roseobacter denitrificans OCh 114 anti-oxidant AhpCTSA family protein YP_681020.1 616042 D 375451 CDS YP_681021.1 110678014 4198227 complement(616843..617820) 1 NC_008209.1 glycosyl transferase family protein 617820 4198227 RD1_0635 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_681021.1 616843 R 375451 CDS YP_681022.1 110678015 4198228 617819..618772 1 NC_008209.1 glycosyl transferase family protein 618772 4198228 RD1_0636 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_681022.1 617819 D 375451 CDS YP_681023.1 110678016 4198229 complement(618906..621041) 1 NC_008209.1 polynucleotide phosphorylase 621041 pnp 4198229 pnp Roseobacter denitrificans OCh 114 polynucleotide phosphorylase YP_681023.1 618906 R 375451 CDS YP_681024.1 110678017 4198230 complement(621496..623049) 1 NC_008209.1 Na(+)-linked D-alanine glycine permease 623049 4198230 RD1_0638 Roseobacter denitrificans OCh 114 Na(+)-linked D-alanine glycine permease YP_681024.1 621496 R 375451 CDS YP_681025.1 110678018 4198231 complement(623060..623497) 1 NC_008209.1 universal stress family protein 623497 4198231 RD1_0639 Roseobacter denitrificans OCh 114 universal stress family protein YP_681025.1 623060 R 375451 CDS YP_681026.1 110678019 4198232 complement(623772..624362) 1 NC_008209.1 amino acid transporter LysE 624362 4198232 RD1_0641 Roseobacter denitrificans OCh 114 amino acid transporter LysE YP_681026.1 623772 R 375451 CDS YP_681027.1 110678020 4198233 complement(624537..624806) 1 NC_008209.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 624806 rpsO 4198233 rpsO Roseobacter denitrificans OCh 114 30S ribosomal protein S15 YP_681027.1 624537 R 375451 CDS YP_681028.1 110678021 4198234 complement(624977..625240) 1 NC_008209.1 type I secretion target repeat-containing protein 625240 4198234 RD1_0643 Roseobacter denitrificans OCh 114 type I secretion target repeat-containing protein YP_681028.1 624977 R 375451 CDS YP_681029.1 110678022 4198235 complement(625962..626543) 1 NC_008209.1 hypothetical protein 626543 4198235 RD1_0645 Roseobacter denitrificans OCh 114 hypothetical protein YP_681029.1 625962 R 375451 CDS YP_681030.1 110678023 4198080 complement(626688..627233) 1 NC_008209.1 hypothetical protein 627233 4198080 RD1_0646 Roseobacter denitrificans OCh 114 hypothetical protein YP_681030.1 626688 R 375451 CDS YP_681031.1 110678024 4198081 complement(627364..628275) 1 NC_008209.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 628275 truB 4198081 truB Roseobacter denitrificans OCh 114 tRNA pseudouridine synthase B YP_681031.1 627364 R 375451 CDS YP_681032.1 110678025 4198082 complement(628381..629121) 1 NC_008209.1 hypothetical protein 629121 4198082 RD1_0648 Roseobacter denitrificans OCh 114 hypothetical protein YP_681032.1 628381 R 375451 CDS YP_681033.1 110678026 4198083 complement(629118..629549) 1 NC_008209.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 629549 rbfA 4198083 rbfA Roseobacter denitrificans OCh 114 ribosome-binding factor A YP_681033.1 629118 R 375451 CDS YP_681034.1 110678027 4198084 629629..630447 1 NC_008209.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 630447 dapB 4198084 dapB Roseobacter denitrificans OCh 114 dihydrodipicolinate reductase YP_681034.1 629629 D 375451 CDS YP_681035.1 110678028 4198085 630538..630894 1 NC_008209.1 hypothetical protein 630894 4198085 RD1_0651 Roseobacter denitrificans OCh 114 hypothetical protein YP_681035.1 630538 D 375451 CDS YP_681036.1 110678029 4198086 complement(630960..631154) 1 NC_008209.1 hypothetical protein 631154 4198086 RD1_0652 Roseobacter denitrificans OCh 114 hypothetical protein YP_681036.1 630960 R 375451 CDS YP_681037.1 110678030 4198087 631240..632511 1 NC_008209.1 rRNA methyltransferase RsmB 632511 4198087 RD1_0653 Roseobacter denitrificans OCh 114 rRNA methyltransferase RsmB YP_681037.1 631240 D 375451 CDS YP_681038.1 110678031 4198088 632577..634364 1 NC_008209.1 hypothetical protein 634364 4198088 RD1_0654 Roseobacter denitrificans OCh 114 hypothetical protein YP_681038.1 632577 D 375451 CDS YP_681039.1 110678032 4198089 634384..635970 1 NC_008209.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 635970 purH 4198089 purH Roseobacter denitrificans OCh 114 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_681039.1 634384 D 375451 CDS YP_681040.1 110678033 4198090 635985..636470 1 NC_008209.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 636470 lspA 4198090 lspA Roseobacter denitrificans OCh 114 lipoprotein signal peptidase YP_681040.1 635985 D 375451 CDS YP_681041.1 110678034 4198091 636537..637040 1 NC_008209.1 hypothetical protein 637040 4198091 RD1_0657 Roseobacter denitrificans OCh 114 hypothetical protein YP_681041.1 636537 D 375451 CDS YP_681042.1 110678035 4198092 637158..638489 1 NC_008209.1 M16 family peptidase 638489 pqqE 4198092 pqqE Roseobacter denitrificans OCh 114 M16 family peptidase YP_681042.1 637158 D 375451 CDS YP_681043.1 110678036 4198093 638489..639805 1 NC_008209.1 M16 family peptidase 639805 4198093 RD1_0659 Roseobacter denitrificans OCh 114 M16 family peptidase YP_681043.1 638489 D 375451 CDS YP_681044.1 110678037 4198094 complement(639848..642190) 1 NC_008209.1 aldehyde dehydrogenase 642190 ald 4198094 ald Roseobacter denitrificans OCh 114 aldehyde dehydrogenase YP_681044.1 639848 R 375451 CDS YP_681045.1 110678038 4198095 complement(642218..643174) 1 NC_008209.1 deoxyribose-phosphate aldolase 643174 deoC 4198095 deoC Roseobacter denitrificans OCh 114 deoxyribose-phosphate aldolase YP_681045.1 642218 R 375451 CDS YP_681046.1 110678039 4198096 643354..645186 1 NC_008209.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 645186 mutL 4198096 mutL Roseobacter denitrificans OCh 114 DNA mismatch repair protein YP_681046.1 643354 D 375451 CDS YP_681047.1 110678040 4198097 645183..646418 1 NC_008209.1 RmuC domain-containing protein 646418 4198097 RD1_0663 Roseobacter denitrificans OCh 114 RmuC domain-containing protein YP_681047.1 645183 D 375451 CDS YP_681048.1 110678041 4198098 646415..646513 1 NC_008209.1 hypothetical protein 646513 4198098 RD1_0664 Roseobacter denitrificans OCh 114 hypothetical protein YP_681048.1 646415 D 375451 CDS YP_681049.1 110678042 4198040 complement(646510..647697) 1 NC_008209.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 647697 uxuA 4198040 uxuA Roseobacter denitrificans OCh 114 mannonate dehydratase YP_681049.1 646510 R 375451 CDS YP_681050.1 110678043 4198041 complement(647694..648746) 1 NC_008209.1 oxidoreductase 648746 4198041 RD1_0666 Roseobacter denitrificans OCh 114 oxidoreductase YP_681050.1 647694 R 375451 CDS YP_681051.1 110678044 4198042 complement(648748..649749) 1 NC_008209.1 oxidoreductase 649749 4198042 RD1_0667 Roseobacter denitrificans OCh 114 oxidoreductase YP_681051.1 648748 R 375451 CDS YP_681052.1 110678045 4198043 complement(649746..650783) 1 NC_008209.1 oxidoreductase 650783 4198043 RD1_0668 Roseobacter denitrificans OCh 114 oxidoreductase YP_681052.1 649746 R 375451 CDS YP_681053.1 110678046 4198044 complement(650780..651661) 1 NC_008209.1 2-dehydro-3-deoxygluconokinase 651661 kdgK 4198044 kdgK Roseobacter denitrificans OCh 114 2-dehydro-3-deoxygluconokinase YP_681053.1 650780 R 375451 CDS YP_681054.1 110678047 4198045 complement(651658..652542) 1 NC_008209.1 hypothetical protein 652542 4198045 RD1_0671 Roseobacter denitrificans OCh 114 hypothetical protein YP_681054.1 651658 R 375451 CDS YP_681055.1 110678048 4198046 complement(652543..653430) 1 NC_008209.1 2-hydroxy-3-oxopropionate reductase 653430 garR 4198046 garR Roseobacter denitrificans OCh 114 2-hydroxy-3-oxopropionate reductase YP_681055.1 652543 R 375451 CDS YP_681056.1 110678049 4198047 complement(653443..654321) 1 NC_008209.1 phytanoyl-CoA dioxygenase 654321 4198047 RD1_0673 Roseobacter denitrificans OCh 114 phytanoyl-CoA dioxygenase YP_681056.1 653443 R 375451 CDS YP_681057.1 110678050 4198048 complement(654308..655330) 1 NC_008209.1 oxidoreductase 655330 4198048 RD1_0674 Roseobacter denitrificans OCh 114 oxidoreductase YP_681057.1 654308 R 375451 CDS YP_681058.1 110678051 4198049 complement(655327..656835) 1 NC_008209.1 D-galactarate dehydratase 656835 garD 4198049 garD Roseobacter denitrificans OCh 114 D-galactarate dehydratase YP_681058.1 655327 R 375451 CDS YP_681059.1 110678052 4198050 complement(656847..657797) 1 NC_008209.1 hypothetical protein 657797 4198050 RD1_0676 Roseobacter denitrificans OCh 114 hypothetical protein YP_681059.1 656847 R 375451 CDS YP_681060.1 110678053 4198051 complement(657813..659435) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 659435 4198051 RD1_0677 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_681060.1 657813 R 375451 CDS YP_681061.1 110678054 4198052 complement(659435..660058) 1 NC_008209.1 TRAP dicarboxylate transporter DctQ subunit 660058 4198052 RD1_0678 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter DctQ subunit YP_681061.1 659435 R 375451 CDS YP_681062.1 110678055 4198053 complement(660302..661471) 1 NC_008209.1 racemase 661471 4198053 RD1_0679 Roseobacter denitrificans OCh 114 racemase YP_681062.1 660302 R 375451 CDS YP_681063.1 110678056 4198054 complement(661543..662565) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctP 662565 4198054 RD1_0680 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctP YP_681063.1 661543 R 375451 CDS YP_681064.1 110678057 4198055 662590..662688 1 NC_008209.1 hypothetical protein 662688 4198055 RD1_0681 Roseobacter denitrificans OCh 114 hypothetical protein YP_681064.1 662590 D 375451 CDS YP_681065.1 110678058 4198056 662762..663439 1 NC_008209.1 transcriptional regulatory protein 663439 4198056 RD1_0682 Roseobacter denitrificans OCh 114 transcriptional regulatory protein YP_681065.1 662762 D 375451 CDS YP_681066.1 110678059 4198057 complement(663412..664383) 1 NC_008209.1 hypothetical protein 664383 4198057 RD1_0683 Roseobacter denitrificans OCh 114 hypothetical protein YP_681066.1 663412 R 375451 CDS YP_681067.1 110678060 4198058 complement(664380..665267) 1 NC_008209.1 2-hydroxy-3-oxopropionate reductase 665267 glxR 4198058 glxR Roseobacter denitrificans OCh 114 2-hydroxy-3-oxopropionate reductase YP_681067.1 664380 R 375451 CDS YP_681068.1 110678061 4198059 665467..666228 1 NC_008209.1 oxidoreductase 666228 4198059 RD1_0685 Roseobacter denitrificans OCh 114 oxidoreductase YP_681068.1 665467 D 375451 CDS YP_681069.1 110678062 4198061 666225..668024 1 NC_008209.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 668024 4198061 RD1_0686 Roseobacter denitrificans OCh 114 dihydroxy-acid dehydratase YP_681069.1 666225 D 375451 CDS YP_681070.1 110678063 4198062 668058..668906 1 NC_008209.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 668906 4198062 RD1_0688 Roseobacter denitrificans OCh 114 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_681070.1 668058 D 375451 CDS YP_681071.1 110678064 4198063 668907..669836 1 NC_008209.1 D-isomer specific 2-hydroxyacid dehydrogenase 669836 4198063 RD1_0689 Roseobacter denitrificans OCh 114 D-isomer specific 2-hydroxyacid dehydrogenase YP_681071.1 668907 D 375451 CDS YP_681072.1 110678065 4198064 669838..670938 1 NC_008209.1 racemase 670938 4198064 RD1_0690 Roseobacter denitrificans OCh 114 racemase YP_681072.1 669838 D 375451 CDS YP_681073.1 110678066 4198065 complement(670935..671588) 1 NC_008209.1 anti-sigma factor ChrR 671588 chrR 4198065 chrR Roseobacter denitrificans OCh 114 anti-sigma factor ChrR YP_681073.1 670935 R 375451 CDS YP_681074.1 110678067 4198066 complement(671596..672252) 1 NC_008209.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 672252 rpoE 4198066 rpoE Roseobacter denitrificans OCh 114 RNA polymerase sigma factor RpoE YP_681074.1 671596 R 375451 CDS YP_681075.1 110678068 4198067 672406..673704 1 NC_008209.1 dehydrogenase 673704 4198067 RD1_0693 Roseobacter denitrificans OCh 114 dehydrogenase YP_681075.1 672406 D 375451 CDS YP_681076.1 110678069 4198068 673701..674459 1 NC_008209.1 hypothetical protein 674459 4198068 RD1_0694 Roseobacter denitrificans OCh 114 hypothetical protein YP_681076.1 673701 D 375451 CDS YP_681077.1 110678070 4198069 674459..675688 1 NC_008209.1 sodium:galactoside symporter family protein 675688 4198069 RD1_0695 Roseobacter denitrificans OCh 114 sodium:galactoside symporter family protein YP_681077.1 674459 D 375451 CDS YP_681078.1 110678071 4198070 675698..676252 1 NC_008209.1 hypothetical protein 676252 4198070 RD1_0696 Roseobacter denitrificans OCh 114 hypothetical protein YP_681078.1 675698 D 375451 CDS YP_681079.1 110678072 4198071 676252..676983 1 NC_008209.1 oxidoreductase 676983 4198071 RD1_0697 Roseobacter denitrificans OCh 114 oxidoreductase YP_681079.1 676252 D 375451 CDS YP_681080.1 110678073 4198072 complement(676987..678039) 1 NC_008209.1 saccharopine dehydrogenase 678039 4198072 RD1_0698 Roseobacter denitrificans OCh 114 saccharopine dehydrogenase YP_681080.1 676987 R 375451 CDS YP_681081.1 110678074 4198073 complement(678036..678656) 1 NC_008209.1 glutathione S-transferase 678656 gst 4198073 gst Roseobacter denitrificans OCh 114 glutathione S-transferase YP_681081.1 678036 R 375451 CDS YP_681082.1 110678075 4198074 complement(678667..679320) 1 NC_008209.1 phosphoglycerate mutase 679320 4198074 RD1_0700 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_681082.1 678667 R 375451 CDS YP_681083.1 110678076 4198075 679438..679563 1 NC_008209.1 hypothetical protein 679563 4198075 RD1_0701 Roseobacter denitrificans OCh 114 hypothetical protein YP_681083.1 679438 D 375451 CDS YP_681084.1 110678077 4198076 679654..681624 1 NC_008209.1 AMP-binding protein 681624 4198076 RD1_0702 Roseobacter denitrificans OCh 114 AMP-binding protein YP_681084.1 679654 D 375451 CDS YP_681085.1 110678078 4198077 681662..682480 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 682480 4198077 RD1_0703 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681085.1 681662 D 375451 CDS YP_681086.1 110678079 4198078 682582..683571 1 NC_008209.1 branched-chain amino acid ABC transporter permease 683571 4198078 RD1_0704 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681086.1 682582 D 375451 CDS YP_681087.1 110678080 4198079 complement(683602..683940) 1 NC_008209.1 hypothetical protein 683940 4198079 RD1_0705 Roseobacter denitrificans OCh 114 hypothetical protein YP_681087.1 683602 R 375451 CDS YP_681088.1 110678081 4198002 684146..685222 1 NC_008209.1 branched-chain amino acid ABC transporter permease 685222 4198002 RD1_0706 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681088.1 684146 D 375451 CDS YP_681089.1 110678082 4198003 685313..686596 1 NC_008209.1 hypothetical protein 686596 4198003 RD1_0708 Roseobacter denitrificans OCh 114 hypothetical protein YP_681089.1 685313 D 375451 CDS YP_681090.1 110678083 4198004 686729..687556 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 687556 4198004 RD1_0709 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681090.1 686729 D 375451 CDS YP_681091.1 110678084 4198005 687719..688954 1 NC_008209.1 phenylacetate-CoA ligase 688954 paaK 4198005 paaK Roseobacter denitrificans OCh 114 phenylacetate-CoA ligase YP_681091.1 687719 D 375451 CDS YP_681092.1 110678085 4198006 689085..689789 1 NC_008209.1 hypothetical protein 689789 4198006 RD1_0711 Roseobacter denitrificans OCh 114 hypothetical protein YP_681092.1 689085 D 375451 CDS YP_681093.1 110678086 4198008 690832..691650 1 NC_008209.1 voltage-gated K+ channel protein 691650 4198008 RD1_0715 Roseobacter denitrificans OCh 114 voltage-gated K+ channel protein YP_681093.1 690832 D 375451 CDS YP_681094.1 110678087 4198009 691586..692329 1 NC_008209.1 hypothetical protein 692329 4198009 RD1_0716 Roseobacter denitrificans OCh 114 hypothetical protein YP_681094.1 691586 D 375451 CDS YP_681095.1 110678088 4198011 692810..693670 1 NC_008209.1 N-formylglutamate amidohydrolase 693670 hutG 4198011 hutG Roseobacter denitrificans OCh 114 N-formylglutamate amidohydrolase YP_681095.1 692810 D 375451 CDS YP_681096.1 110678089 4198012 complement(693673..694926) 1 NC_008209.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 694926 dinB 4198012 dinB Roseobacter denitrificans OCh 114 DNA polymerase IV YP_681096.1 693673 R 375451 CDS YP_681097.1 110678090 4198013 complement(695269..696000) 1 NC_008209.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 696000 pyrF 4198013 pyrF Roseobacter denitrificans OCh 114 orotidine 5'-phosphate decarboxylase YP_681097.1 695269 R 375451 CDS YP_681098.1 110678091 4198014 696573..699191 1 NC_008209.1 ATP-dependent Clp protease, ATP-binding subunit ClpB 699191 clpB 4198014 clpB Roseobacter denitrificans OCh 114 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_681098.1 696573 D 375451 CDS YP_681099.1 110678092 4198015 complement(699363..699848) 1 NC_008209.1 hypothetical protein 699848 4198015 RD1_0722 Roseobacter denitrificans OCh 114 hypothetical protein YP_681099.1 699363 R 375451 CDS YP_681100.1 110678093 4198016 700100..700744 1 NC_008209.1 hydrolase 700744 4198016 RD1_0723 Roseobacter denitrificans OCh 114 hydrolase YP_681100.1 700100 D 375451 CDS YP_681101.1 110678094 4198017 700873..701778 1 NC_008209.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 701778 4198017 RD1_0725 Roseobacter denitrificans OCh 114 sulfite oxidase subunit YedY YP_681101.1 700873 D 375451 CDS YP_681102.1 110678095 4198018 701807..702412 1 NC_008209.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 702412 4198018 RD1_0726 Roseobacter denitrificans OCh 114 sulfite oxidase subunit YedZ YP_681102.1 701807 D 375451 CDS YP_681103.1 110678096 4197913 708589..708714 1 NC_008209.1 hypothetical protein 708714 4197913 RD1_0732 Roseobacter denitrificans OCh 114 hypothetical protein YP_681103.1 708589 D 375451 CDS YP_681104.1 110678097 4197914 complement(709902..710048) 1 NC_008209.1 hypothetical protein 710048 4197914 RD1_0733 Roseobacter denitrificans OCh 114 hypothetical protein YP_681104.1 709902 R 375451 CDS YP_681105.1 110678098 4197915 710114..710887 1 NC_008209.1 hypothetical protein 710887 4197915 RD1_0734 Roseobacter denitrificans OCh 114 hypothetical protein YP_681105.1 710114 D 375451 CDS YP_681106.1 110678099 4197916 complement(711419..711817) 1 NC_008209.1 hypothetical protein 711817 4197916 RD1_0735 Roseobacter denitrificans OCh 114 hypothetical protein YP_681106.1 711419 R 375451 CDS YP_681107.1 110678100 4197917 complement(711814..711930) 1 NC_008209.1 hypothetical protein 711930 4197917 RD1_0736 Roseobacter denitrificans OCh 114 hypothetical protein YP_681107.1 711814 R 375451 CDS YP_681108.1 110678101 4197918 complement(711927..712547) 1 NC_008209.1 3-demethylubiquinone-9 3-methyltransferase 712547 ubiG 4197918 ubiG Roseobacter denitrificans OCh 114 3-demethylubiquinone-9 3-methyltransferase YP_681108.1 711927 R 375451 CDS YP_681109.1 110678102 4197919 complement(712510..713355) 1 NC_008209.1 hypothetical protein 713355 4197919 RD1_0738 Roseobacter denitrificans OCh 114 hypothetical protein YP_681109.1 712510 R 375451 CDS YP_681110.1 110678103 4197920 complement(713850..715145) 1 NC_008209.1 TRAP-type C4-dicarboxylate transport protein, permease component 715145 4197920 RD1_0740 Roseobacter denitrificans OCh 114 TRAP-type C4-dicarboxylate transport protein, permease component YP_681110.1 713850 R 375451 CDS YP_681111.1 110678104 4197921 complement(715142..715684) 1 NC_008209.1 hypothetical protein 715684 4197921 RD1_0741 Roseobacter denitrificans OCh 114 hypothetical protein YP_681111.1 715142 R 375451 CDS YP_681112.1 110678105 4197922 complement(715745..716740) 1 NC_008209.1 C4-dicarboxylate-binding protein 716740 4197922 RD1_0742 Roseobacter denitrificans OCh 114 C4-dicarboxylate-binding protein YP_681112.1 715745 R 375451 CDS YP_681113.1 110678106 4197923 complement(716807..717463) 1 NC_008209.1 transcriptional regulator 717463 4197923 RD1_0743 Roseobacter denitrificans OCh 114 transcriptional regulator YP_681113.1 716807 R 375451 CDS YP_681114.1 110678107 4197889 complement(717456..718325) 1 NC_008209.1 dihydrodipicolinate synthase 718325 dapA 4197889 dapA Roseobacter denitrificans OCh 114 dihydrodipicolinate synthase YP_681114.1 717456 R 375451 CDS YP_681115.1 110678108 4197890 718424..719293 1 NC_008209.1 sugar kinase yihV 719293 yihV 4197890 yihV Roseobacter denitrificans OCh 114 sugar kinase yihV YP_681115.1 718424 D 375451 CDS YP_681116.1 110678109 4197891 720200..720979 1 NC_008209.1 phosphomethylpyrimidine kinase 720979 thiD 4197891 thiD Roseobacter denitrificans OCh 114 phosphomethylpyrimidine kinase YP_681116.1 720200 D 375451 CDS YP_681117.1 110678110 4197892 720976..721956 1 NC_008209.1 thiamine biosynthesis oxidoreductase ThiO 721956 thiO 4197892 thiO Roseobacter denitrificans OCh 114 thiamine biosynthesis oxidoreductase ThiO YP_681117.1 720976 D 375451 CDS YP_681118.1 110678111 4197893 721934..722131 1 NC_008209.1 thiamine biosynthesis protein ThiS 722131 thiS 4197893 thiS Roseobacter denitrificans OCh 114 thiamine biosynthesis protein ThiS YP_681118.1 721934 D 375451 CDS YP_681119.1 110678112 4197894 722133..722903 1 NC_008209.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 722903 thiG 4197894 thiG Roseobacter denitrificans OCh 114 thiazole synthase YP_681119.1 722133 D 375451 CDS YP_681120.1 110678113 4197895 722900..723496 1 NC_008209.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 723496 thiE 4197895 thiE Roseobacter denitrificans OCh 114 thiamine-phosphate pyrophosphorylase YP_681120.1 722900 D 375451 CDS YP_681121.1 110678114 4197896 723493..724449 1 NC_008209.1 thiamine biosynthesis protein ThiF 724449 thiF 4197896 thiF Roseobacter denitrificans OCh 114 thiamine biosynthesis protein ThiF YP_681121.1 723493 D 375451 CDS YP_681122.1 110678115 4197897 724460..725395 1 NC_008209.1 ABC transporter substrate-binding protein 725395 4197897 RD1_0752 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681122.1 724460 D 375451 CDS YP_681123.1 110678116 4197898 725392..726060 1 NC_008209.1 transcriptional activator 726060 tenA 4197898 tenA Roseobacter denitrificans OCh 114 transcriptional activator YP_681123.1 725392 D 375451 CDS YP_681124.1 110678117 4197899 726069..726758 1 NC_008209.1 ABC transporter ATP-binding protein 726758 4197899 RD1_0754 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681124.1 726069 D 375451 CDS YP_681125.1 110678118 4197900 726755..727408 1 NC_008209.1 transcriptional regulator 727408 tenA 4197900 tenA Roseobacter denitrificans OCh 114 transcriptional regulator YP_681125.1 726755 D 375451 CDS YP_681126.1 110678119 4197901 727405..728148 1 NC_008209.1 ABC transporter permease 728148 4197901 RD1_0756 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681126.1 727405 D 375451 CDS YP_681127.1 110678120 4197902 complement(728709..730001) 1 NC_008209.1 arginine/ornithine antiporter 730001 arcD 4197902 arcD Roseobacter denitrificans OCh 114 arginine/ornithine antiporter YP_681127.1 728709 R 375451 CDS YP_681128.1 110678121 4197903 complement(730241..730687) 1 NC_008209.1 arginine deiminase 730687 arcA 4197903 arcA Roseobacter denitrificans OCh 114 arginine deiminase YP_681128.1 730241 R 375451 CDS YP_681129.1 110678122 4197904 731604..732605 1 NC_008209.1 RND efflux membrane fusion protein 732605 4197904 RD1_0759 Roseobacter denitrificans OCh 114 RND efflux membrane fusion protein YP_681129.1 731604 D 375451 CDS YP_681130.1 110678123 4197906 complement(735357..736136) 1 NC_008209.1 hypothetical protein 736136 4197906 RD1_0763 Roseobacter denitrificans OCh 114 hypothetical protein YP_681130.1 735357 R 375451 CDS YP_681131.1 110678124 4197907 complement(736527..736832) 1 NC_008209.1 hypothetical protein 736832 4197907 RD1_0764 Roseobacter denitrificans OCh 114 hypothetical protein YP_681131.1 736527 R 375451 CDS YP_681132.1 110678125 4197908 complement(736914..738365) 1 NC_008209.1 hypothetical protein 738365 4197908 RD1_0765 Roseobacter denitrificans OCh 114 hypothetical protein YP_681132.1 736914 R 375451 CDS YP_681133.1 110678126 4197870 complement(738365..739432) 1 NC_008209.1 serine protease 739432 4197870 RD1_0766 Roseobacter denitrificans OCh 114 serine protease YP_681133.1 738365 R 375451 CDS YP_681134.1 110678127 4197871 complement(739964..741988) 1 NC_008209.1 hypothetical protein 741988 4197871 RD1_0767 Roseobacter denitrificans OCh 114 hypothetical protein YP_681134.1 739964 R 375451 CDS YP_681135.1 110678128 4197872 complement(742550..743563) 1 NC_008209.1 hypothetical protein 743563 4197872 RD1_0768 Roseobacter denitrificans OCh 114 hypothetical protein YP_681135.1 742550 R 375451 CDS YP_681136.1 110678129 4197873 complement(743588..745483) 1 NC_008209.1 hypothetical protein 745483 4197873 RD1_0769 Roseobacter denitrificans OCh 114 hypothetical protein YP_681136.1 743588 R 375451 CDS YP_681137.1 110678130 4197874 complement(745480..746226) 1 NC_008209.1 ABC transporter permease 746226 4197874 RD1_0770 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681137.1 745480 R 375451 CDS YP_681138.1 110678131 4197875 complement(746242..747189) 1 NC_008209.1 ABC transporter ATP-binding protein 747189 4197875 RD1_0771 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681138.1 746242 R 375451 CDS YP_681139.1 110678132 4197876 complement(747428..749059) 1 NC_008209.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 749059 groEL 4197876 groEL Roseobacter denitrificans OCh 114 molecular chaperone GroEL YP_681139.1 747428 R 375451 CDS YP_681140.1 110678133 4197877 complement(749090..749401) 1 NC_008209.1 chaperonin, 10 kDa 749401 groES 4197877 groES Roseobacter denitrificans OCh 114 chaperonin, 10 kDa YP_681140.1 749090 R 375451 CDS YP_681141.1 110678134 4197878 complement(749679..750533) 1 NC_008209.1 protease Do 750533 degP 4197878 degP Roseobacter denitrificans OCh 114 protease Do YP_681141.1 749679 R 375451 CDS YP_681142.1 110678135 4197879 complement(751007..751885) 1 NC_008209.1 heat shock protein 751885 htpX 4197879 htpX Roseobacter denitrificans OCh 114 heat shock protein YP_681142.1 751007 R 375451 CDS YP_681143.1 110678136 4197880 complement(752192..752365) 1 NC_008209.1 hypothetical protein 752365 4197880 RD1_0776 Roseobacter denitrificans OCh 114 hypothetical protein YP_681143.1 752192 R 375451 CDS YP_681144.1 110678137 4197881 complement(752410..752655) 1 NC_008209.1 hypothetical protein 752655 4197881 RD1_0777 Roseobacter denitrificans OCh 114 hypothetical protein YP_681144.1 752410 R 375451 CDS YP_681145.1 110678138 4197882 complement(752732..752986) 1 NC_008209.1 hypothetical protein 752986 4197882 RD1_0778 Roseobacter denitrificans OCh 114 hypothetical protein YP_681145.1 752732 R 375451 CDS YP_681146.1 110678139 4197883 complement(753820..755007) 1 NC_008209.1 hypothetical protein 755007 4197883 RD1_0779 Roseobacter denitrificans OCh 114 hypothetical protein YP_681146.1 753820 R 375451 CDS YP_681147.1 110678140 4197885 complement(756285..756419) 1 NC_008209.1 hypothetical protein 756419 4197885 RD1_0782 Roseobacter denitrificans OCh 114 hypothetical protein YP_681147.1 756285 R 375451 CDS YP_681148.1 110678141 4197886 complement(757046..758791) 1 NC_008209.1 sulfate transporter permease 758791 4197886 RD1_0783 Roseobacter denitrificans OCh 114 sulfate transporter permease YP_681148.1 757046 R 375451 CDS YP_681149.1 110678142 4197887 complement(758884..760563) 1 NC_008209.1 hypothetical protein 760563 4197887 RD1_0784 Roseobacter denitrificans OCh 114 hypothetical protein YP_681149.1 758884 R 375451 CDS YP_681150.1 110678143 4197888 complement(760575..761456) 1 NC_008209.1 metallo-beta-lactamase family protein 761456 4197888 RD1_0785 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_681150.1 760575 R 375451 CDS YP_681151.1 110678144 4197851 complement(761487..761915) 1 NC_008209.1 hypothetical protein 761915 4197851 RD1_0786 Roseobacter denitrificans OCh 114 hypothetical protein YP_681151.1 761487 R 375451 CDS YP_681152.1 110678145 4197852 complement(761917..762348) 1 NC_008209.1 hypothetical protein 762348 4197852 RD1_0787 Roseobacter denitrificans OCh 114 hypothetical protein YP_681152.1 761917 R 375451 CDS YP_681153.1 110678146 4197853 complement(762353..762565) 1 NC_008209.1 hypothetical protein 762565 4197853 RD1_0788 Roseobacter denitrificans OCh 114 hypothetical protein YP_681153.1 762353 R 375451 CDS YP_681154.1 110678147 4197854 complement(762658..763320) 1 NC_008209.1 cyclic nucleotide-binding protein 763320 4197854 RD1_0789 Roseobacter denitrificans OCh 114 cyclic nucleotide-binding protein YP_681154.1 762658 R 375451 CDS YP_681155.1 110678148 4197855 complement(763317..763787) 1 NC_008209.1 hypothetical protein 763787 4197855 RD1_0790 Roseobacter denitrificans OCh 114 hypothetical protein YP_681155.1 763317 R 375451 CDS YP_681156.1 110678149 4197857 764583..765014 1 NC_008209.1 hypothetical protein 765014 4197857 RD1_0792 Roseobacter denitrificans OCh 114 hypothetical protein YP_681156.1 764583 D 375451 CDS YP_681157.1 110678150 4197858 765086..766498 1 NC_008209.1 cytochrome oxidase subunit II 766498 cydA 4197858 cydA Roseobacter denitrificans OCh 114 cytochrome oxidase subunit II YP_681157.1 765086 D 375451 CDS YP_681158.1 110678151 4197859 766511..767512 1 NC_008209.1 cytochrome oxidase, subunit II 767512 cydB 4197859 cydB Roseobacter denitrificans OCh 114 cytochrome oxidase, subunit II YP_681158.1 766511 D 375451 CDS YP_681159.1 110678152 4197860 complement(768003..769844) 1 NC_008209.1 hypothetical protein 769844 4197860 RD1_0795 Roseobacter denitrificans OCh 114 hypothetical protein YP_681159.1 768003 R 375451 CDS YP_681160.1 110678153 4197861 complement(769841..770821) 1 NC_008209.1 transposition protein 770821 4197861 RD1_0796 Roseobacter denitrificans OCh 114 transposition protein YP_681160.1 769841 R 375451 CDS YP_681161.1 110678154 4197862 complement(770814..772985) 1 NC_008209.1 transposase 772985 4197862 RD1_0797 Roseobacter denitrificans OCh 114 transposase YP_681161.1 770814 R 375451 CDS YP_681162.1 110678155 4197863 774545..775651 1 NC_008209.1 hypothetical protein 775651 4197863 RD1_0798 Roseobacter denitrificans OCh 114 hypothetical protein YP_681162.1 774545 D 375451 CDS YP_681163.1 110678156 4197864 775648..777111 1 NC_008209.1 hypothetical protein 777111 4197864 RD1_0799 Roseobacter denitrificans OCh 114 hypothetical protein YP_681163.1 775648 D 375451 CDS YP_681164.1 110678157 4197865 777108..779060 1 NC_008209.1 hypothetical protein 779060 4197865 RD1_0800 Roseobacter denitrificans OCh 114 hypothetical protein YP_681164.1 777108 D 375451 CDS YP_681165.1 110678158 4197866 779050..779424 1 NC_008209.1 hypothetical protein 779424 4197866 RD1_0801 Roseobacter denitrificans OCh 114 hypothetical protein YP_681165.1 779050 D 375451 CDS YP_681166.1 110678159 4197867 779429..780592 1 NC_008209.1 cysteine desulfurase 780592 nifS 4197867 nifS Roseobacter denitrificans OCh 114 cysteine desulfurase YP_681166.1 779429 D 375451 CDS YP_681167.1 110678160 4197868 780659..782659 1 NC_008209.1 hypothetical protein 782659 4197868 RD1_0803 Roseobacter denitrificans OCh 114 hypothetical protein YP_681167.1 780659 D 375451 CDS YP_681168.1 110678161 4197869 782807..785824 1 NC_008209.1 RNA polymerase sigma factor 785824 rpoD 4197869 rpoD Roseobacter denitrificans OCh 114 RNA polymerase sigma factor YP_681168.1 782807 D 375451 CDS YP_681169.1 110678162 4197598 785824..787908 1 NC_008209.1 helicase 787908 4197598 RD1_0805 Roseobacter denitrificans OCh 114 helicase YP_681169.1 785824 D 375451 CDS YP_681170.1 110678163 4197599 788135..790186 1 NC_008209.1 hypothetical protein 790186 4197599 RD1_0806 Roseobacter denitrificans OCh 114 hypothetical protein YP_681170.1 788135 D 375451 CDS YP_681171.1 110678164 4197600 790140..790607 1 NC_008209.1 hypothetical protein 790607 4197600 RD1_0807 Roseobacter denitrificans OCh 114 hypothetical protein YP_681171.1 790140 D 375451 CDS YP_681172.1 110678165 4197601 791272..792504 1 NC_008209.1 hypothetical protein 792504 4197601 RD1_0808 Roseobacter denitrificans OCh 114 hypothetical protein YP_681172.1 791272 D 375451 CDS YP_681173.1 110678166 4197602 complement(793399..794007) 1 NC_008209.1 hypothetical protein 794007 4197602 RD1_0809 Roseobacter denitrificans OCh 114 hypothetical protein YP_681173.1 793399 R 375451 CDS YP_681174.1 110678167 4197603 794877..795125 1 NC_008209.1 DNA-binding protein 795125 4197603 RD1_0810 Roseobacter denitrificans OCh 114 DNA-binding protein YP_681174.1 794877 D 375451 CDS YP_681175.1 110678168 4197604 795272..795388 1 NC_008209.1 hypothetical protein 795388 4197604 RD1_0811 Roseobacter denitrificans OCh 114 hypothetical protein YP_681175.1 795272 D 375451 CDS YP_681176.1 110678169 4197606 795783..796625 1 NC_008209.1 diaminopimelate epimerase 796625 dapF 4197606 dapF Roseobacter denitrificans OCh 114 diaminopimelate epimerase YP_681176.1 795783 D 375451 CDS YP_681177.1 110678170 4197607 796622..797875 1 NC_008209.1 MiaB-like tRNA modifying enzyme 797875 4197607 RD1_0814 Roseobacter denitrificans OCh 114 MiaB-like tRNA modifying enzyme YP_681177.1 796622 D 375451 CDS YP_681178.1 110678171 4197608 798098..798457 1 NC_008209.1 hypothetical protein 798457 4197608 RD1_0815 Roseobacter denitrificans OCh 114 hypothetical protein YP_681178.1 798098 D 375451 CDS YP_681179.1 110678172 4197609 798543..799160 1 NC_008209.1 Crp/FNR family transcriptional regulator 799160 4197609 RD1_0816 Roseobacter denitrificans OCh 114 Crp/FNR family transcriptional regulator YP_681179.1 798543 D 375451 CDS YP_681180.1 110678173 4197610 complement(799639..800385) 1 NC_008209.1 trypsin domain-containing protein 800385 4197610 RD1_0817 Roseobacter denitrificans OCh 114 trypsin domain-containing protein YP_681180.1 799639 R 375451 CDS YP_681181.1 110678174 4197611 complement(800556..801269) 1 NC_008209.1 aspartate racemase 801269 4197611 RD1_0818 Roseobacter denitrificans OCh 114 aspartate racemase YP_681181.1 800556 R 375451 CDS YP_681182.1 110678175 4197612 complement(801282..802295) 1 NC_008209.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 802295 4197612 RD1_0819 Roseobacter denitrificans OCh 114 D-cysteine desulfhydrase YP_681182.1 801282 R 375451 CDS YP_681183.1 110678176 4197613 802412..803389 1 NC_008209.1 LysR family transcriptional regulator 803389 4197613 RD1_0820 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_681183.1 802412 D 375451 CDS YP_681184.1 110678177 4197614 complement(803709..804707) 1 NC_008209.1 phosphate acetyltransferase 804707 pta 4197614 pta Roseobacter denitrificans OCh 114 phosphate acetyltransferase YP_681184.1 803709 R 375451 CDS YP_681185.1 110678178 4197615 complement(804753..805112) 1 NC_008209.1 hypothetical protein 805112 4197615 RD1_0823 Roseobacter denitrificans OCh 114 hypothetical protein YP_681185.1 804753 R 375451 CDS YP_681186.1 110678179 4197616 complement(805132..806172) 1 NC_008209.1 hypothetical protein 806172 4197616 RD1_0824 Roseobacter denitrificans OCh 114 hypothetical protein YP_681186.1 805132 R 375451 CDS YP_681187.1 110678180 4197617 complement(806289..808070) 1 NC_008209.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 808070 xsc 4197617 xsc Roseobacter denitrificans OCh 114 sulfoacetaldehyde acetyltransferase YP_681187.1 806289 R 375451 CDS YP_681188.1 110678181 4197618 complement(808095..809489) 1 NC_008209.1 taurine dehydrogenase 809489 tauY 4197618 tauY Roseobacter denitrificans OCh 114 taurine dehydrogenase YP_681188.1 808095 R 375451 CDS YP_681189.1 110678182 4197619 complement(809517..809903) 1 NC_008209.1 taurine dehydrogenase small 809903 tauX 4197619 tauX Roseobacter denitrificans OCh 114 taurine dehydrogenase small YP_681189.1 809517 R 375451 CDS YP_681190.1 110678183 4197620 complement(809928..810431) 1 NC_008209.1 universal stress family protein 810431 4197620 RD1_0830 Roseobacter denitrificans OCh 114 universal stress family protein YP_681190.1 809928 R 375451 CDS YP_681191.1 110678184 4197621 complement(810456..811796) 1 NC_008209.1 C4-dicarboxylate transport system, large permease 811796 tauM 4197621 tauM Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, large permease YP_681191.1 810456 R 375451 CDS YP_681192.1 110678185 4197622 complement(811796..812362) 1 NC_008209.1 C4-dicarboxylate transport system, small permease 812362 tauL 4197622 tauL Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, small permease YP_681192.1 811796 R 375451 CDS YP_681193.1 110678186 4197623 complement(812426..813442) 1 NC_008209.1 ABC transporter substrate-binding protein 813442 tauK 4197623 tauK Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681193.1 812426 R 375451 CDS YP_681194.1 110678187 4197624 813597..815060 1 NC_008209.1 transcriptional regulator 815060 4197624 RD1_0834 Roseobacter denitrificans OCh 114 transcriptional regulator YP_681194.1 813597 D 375451 CDS YP_681195.1 110678188 4197625 815119..815844 1 NC_008209.1 hypothetical protein 815844 4197625 RD1_0836 Roseobacter denitrificans OCh 114 hypothetical protein YP_681195.1 815119 D 375451 CDS YP_681196.1 110678189 4197626 815841..815963 1 NC_008209.1 hypothetical protein 815963 4197626 RD1_0837 Roseobacter denitrificans OCh 114 hypothetical protein YP_681196.1 815841 D 375451 CDS YP_681197.1 110678190 4197627 complement(816180..816758) 1 NC_008209.1 transcriptional regulator 816758 4197627 RD1_0838 Roseobacter denitrificans OCh 114 transcriptional regulator YP_681197.1 816180 R 375451 CDS YP_681198.1 110678191 4197628 816875..818170 1 NC_008209.1 4-aminobutyrate aminotransferase 818170 gabT 4197628 gabT Roseobacter denitrificans OCh 114 4-aminobutyrate aminotransferase YP_681198.1 816875 D 375451 CDS YP_681199.1 110678192 4197629 818225..819661 1 NC_008209.1 5-oxovalerate dehydrogenase 819661 cpnE 4197629 cpnE Roseobacter denitrificans OCh 114 5-oxovalerate dehydrogenase YP_681199.1 818225 D 375451 CDS YP_681200.1 110678193 4197630 819667..820767 1 NC_008209.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 820767 buk 4197630 buk Roseobacter denitrificans OCh 114 butyrate kinase YP_681200.1 819667 D 375451 CDS YP_681201.1 110678194 4197631 820764..821681 1 NC_008209.1 phosphate butyryltransferase 821681 ptb 4197631 ptb Roseobacter denitrificans OCh 114 phosphate butyryltransferase YP_681201.1 820764 D 375451 CDS YP_681202.1 110678195 4197632 complement(821782..822822) 1 NC_008209.1 hypothetical protein 822822 4197632 RD1_0843 Roseobacter denitrificans OCh 114 hypothetical protein YP_681202.1 821782 R 375451 CDS YP_681203.1 110678196 4197633 822945..823292 1 NC_008209.1 hypothetical protein 823292 4197633 RD1_0844 Roseobacter denitrificans OCh 114 hypothetical protein YP_681203.1 822945 D 375451 CDS YP_681204.1 110678197 4197634 complement(823302..824756) 1 NC_008209.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase-like protein 824756 4197634 RD1_0845 Roseobacter denitrificans OCh 114 biotin carboxylase-like protein YP_681204.1 823302 R 375451 CDS YP_681205.1 110678198 4197635 825123..826145 1 NC_008209.1 ABC transporter substrate-binding protein 826145 4197635 RD1_0846 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681205.1 825123 D 375451 CDS YP_681206.1 110678199 4197636 826145..826726 1 NC_008209.1 TRAP dicarboxylate transporter DctQ subunit 826726 4197636 RD1_0847 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter DctQ subunit YP_681206.1 826145 D 375451 CDS YP_681207.1 110678200 4197637 826786..828099 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 828099 4197637 RD1_0848 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_681207.1 826786 D 375451 CDS YP_681208.1 110678201 4197638 complement(828118..828474) 1 NC_008209.1 hypothetical protein 828474 4197638 RD1_0849 Roseobacter denitrificans OCh 114 hypothetical protein YP_681208.1 828118 R 375451 CDS YP_681209.1 110678202 4197639 828643..829530 1 NC_008209.1 hydrolase 829530 4197639 RD1_0850 Roseobacter denitrificans OCh 114 hydrolase YP_681209.1 828643 D 375451 CDS YP_681210.1 110678203 4197640 829624..830187 1 NC_008209.1 glyoxalase family protein 830187 4197640 RD1_0851 Roseobacter denitrificans OCh 114 glyoxalase family protein YP_681210.1 829624 D 375451 CDS YP_681211.1 110678204 4197641 complement(830424..831143) 1 NC_008209.1 GntR family transcriptional regulator 831143 4197641 RD1_0853 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_681211.1 830424 R 375451 CDS YP_681212.1 110678205 4197642 831377..832564 1 NC_008209.1 branched-chain amino acid ABC transporter substrate-binding protein 832564 4197642 RD1_0854 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter substrate-binding protein YP_681212.1 831377 D 375451 CDS YP_681213.1 110678206 4197643 832657..833526 1 NC_008209.1 branched-chain amino acid ABC transporter permease 833526 4197643 RD1_0855 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681213.1 832657 D 375451 CDS YP_681214.1 110678207 4197644 833534..834511 1 NC_008209.1 branched-chain amino acid ABC transporter permease 834511 4197644 RD1_0856 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681214.1 833534 D 375451 CDS YP_681215.1 110678208 4197645 834508..835290 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 835290 4197645 RD1_0858 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681215.1 834508 D 375451 CDS YP_681216.1 110678209 4197646 835294..836016 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 836016 4197646 RD1_0859 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681216.1 835294 D 375451 CDS YP_681217.1 110678210 4197647 836023..836706 1 NC_008209.1 hydantoin racemase 836706 hyuE 4197647 hyuE Roseobacter denitrificans OCh 114 hydantoin racemase YP_681217.1 836023 D 375451 CDS YP_681218.1 110678211 4197648 complement(837137..838363) 1 NC_008209.1 hypothetical protein 838363 4197648 RD1_0863 Roseobacter denitrificans OCh 114 hypothetical protein YP_681218.1 837137 R 375451 CDS YP_681219.1 110678212 4197649 838755..839891 1 NC_008209.1 ribose ABC transporter substrate-binding protein 839891 4197649 RD1_0864 Roseobacter denitrificans OCh 114 ribose ABC transporter substrate-binding protein YP_681219.1 838755 D 375451 CDS YP_681220.1 110678213 4197650 839976..841535 1 NC_008209.1 sugar ABC transporter ATP-binding protein 841535 4197650 RD1_0865 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_681220.1 839976 D 375451 CDS YP_681221.1 110678214 4197651 841532..842587 1 NC_008209.1 ribose ABC transporter permease 842587 4197651 RD1_0866 Roseobacter denitrificans OCh 114 ribose ABC transporter permease YP_681221.1 841532 D 375451 CDS YP_681222.1 110678215 4197652 842594..843574 1 NC_008209.1 ribose ABC transporter permease 843574 rbsC 4197652 rbsC Roseobacter denitrificans OCh 114 ribose ABC transporter permease YP_681222.1 842594 D 375451 CDS YP_681223.1 110678216 4197653 843588..844505 1 NC_008209.1 gluconolactonase 844505 gnl 4197653 gnl Roseobacter denitrificans OCh 114 gluconolactonase YP_681223.1 843588 D 375451 CDS YP_681224.1 110678217 4197654 complement(844513..846414) 1 NC_008209.1 type I secretion target repeat-containing protein 846414 4197654 RD1_0869 Roseobacter denitrificans OCh 114 type I secretion target repeat-containing protein YP_681224.1 844513 R 375451 CDS YP_681225.1 110678218 4197655 848030..848956 1 NC_008209.1 hypothetical protein 848956 4197655 RD1_0870 Roseobacter denitrificans OCh 114 hypothetical protein YP_681225.1 848030 D 375451 CDS YP_681226.1 110678219 4197656 849044..850000 1 NC_008209.1 MoxR-like ATPase 850000 moxR 4197656 moxR Roseobacter denitrificans OCh 114 MoxR-like ATPase YP_681226.1 849044 D 375451 CDS YP_681227.1 110678220 4197657 849997..850902 1 NC_008209.1 hypothetical protein 850902 4197657 RD1_0873 Roseobacter denitrificans OCh 114 hypothetical protein YP_681227.1 849997 D 375451 CDS YP_681228.1 110678221 4197658 850899..851270 1 NC_008209.1 hypothetical protein 851270 4197658 RD1_0874 Roseobacter denitrificans OCh 114 hypothetical protein YP_681228.1 850899 D 375451 CDS YP_681229.1 110678222 4197659 851263..852225 1 NC_008209.1 hypothetical protein 852225 4197659 RD1_0875 Roseobacter denitrificans OCh 114 hypothetical protein YP_681229.1 851263 D 375451 CDS YP_681230.1 110678223 4197660 852222..853121 1 NC_008209.1 hypothetical protein 853121 4197660 RD1_0876 Roseobacter denitrificans OCh 114 hypothetical protein YP_681230.1 852222 D 375451 CDS YP_681231.1 110678224 4197661 853202..853792 1 NC_008209.1 hypothetical protein 853792 4197661 RD1_0877 Roseobacter denitrificans OCh 114 hypothetical protein YP_681231.1 853202 D 375451 CDS YP_681232.1 110678225 4197662 853789..854979 1 NC_008209.1 hypothetical protein 854979 4197662 RD1_0878 Roseobacter denitrificans OCh 114 hypothetical protein YP_681232.1 853789 D 375451 CDS YP_681233.1 110678226 4197663 855150..855869 1 NC_008209.1 LuxR family transcriptional regulator 855869 4197663 RD1_0879 Roseobacter denitrificans OCh 114 LuxR family transcriptional regulator YP_681233.1 855150 D 375451 CDS YP_681234.1 110678227 4197664 855881..857038 1 NC_008209.1 hypothetical protein 857038 4197664 RD1_0880 Roseobacter denitrificans OCh 114 hypothetical protein YP_681234.1 855881 D 375451 CDS YP_681235.1 110678228 4197665 857107..859299 1 NC_008209.1 histidine kinase 859299 4197665 RD1_0881 Roseobacter denitrificans OCh 114 histidine kinase YP_681235.1 857107 D 375451 CDS YP_681236.1 110678229 4197666 859333..859992 1 NC_008209.1 hypothetical protein 859992 4197666 RD1_0882 Roseobacter denitrificans OCh 114 hypothetical protein YP_681236.1 859333 D 375451 CDS YP_681237.1 110678230 4197667 859989..860336 1 NC_008209.1 hypothetical protein 860336 4197667 RD1_0883 Roseobacter denitrificans OCh 114 hypothetical protein YP_681237.1 859989 D 375451 CDS YP_681238.1 110678231 4197668 complement(860416..861228) 1 NC_008209.1 hypothetical protein 861228 4197668 RD1_0884 Roseobacter denitrificans OCh 114 hypothetical protein YP_681238.1 860416 R 375451 CDS YP_681239.1 110678232 4197669 861352..862395 1 NC_008209.1 hypothetical protein 862395 4197669 RD1_0885 Roseobacter denitrificans OCh 114 hypothetical protein YP_681239.1 861352 D 375451 CDS YP_681240.1 110678233 4197670 complement(862406..863029) 1 NC_008209.1 hypothetical protein 863029 4197670 RD1_0886 Roseobacter denitrificans OCh 114 hypothetical protein YP_681240.1 862406 R 375451 CDS YP_681241.1 110678234 4197671 863195..864307 1 NC_008209.1 glutathione-dependent formaldehyde dehydrogenase 864307 flhA 4197671 flhA Roseobacter denitrificans OCh 114 glutathione-dependent formaldehyde dehydrogenase YP_681241.1 863195 D 375451 CDS YP_681242.1 110678235 4197672 864316..865140 1 NC_008209.1 S-formylglutathione hydrolase 865140 4197672 RD1_0888 Roseobacter denitrificans OCh 114 S-formylglutathione hydrolase YP_681242.1 864316 D 375451 CDS YP_681243.1 110678236 4197673 865176..865577 1 NC_008209.1 cytochrome c family protein 865577 4197673 RD1_0889 Roseobacter denitrificans OCh 114 cytochrome c family protein YP_681243.1 865176 D 375451 CDS YP_681244.1 110678237 4197674 865703..867505 1 NC_008209.1 methanol dehydrogenase, large subunit 867505 moxF 4197674 moxF Roseobacter denitrificans OCh 114 methanol dehydrogenase, large subunit YP_681244.1 865703 D 375451 CDS YP_681245.1 110678238 4197675 867614..868123 1 NC_008209.1 cytochrome c553I 868123 cycB 4197675 cycB Roseobacter denitrificans OCh 114 cytochrome c553I YP_681245.1 867614 D 375451 CDS YP_681246.1 110678239 4197676 868107..868952 1 NC_008209.1 methanol oxidation protein 868952 4197676 RD1_0892 Roseobacter denitrificans OCh 114 methanol oxidation protein YP_681246.1 868107 D 375451 CDS YP_681247.1 110678240 4197677 868949..869503 1 NC_008209.1 hypothetical protein 869503 4197677 RD1_0893 Roseobacter denitrificans OCh 114 hypothetical protein YP_681247.1 868949 D 375451 CDS YP_681248.1 110678241 4197678 complement(869504..870316) 1 NC_008209.1 hypothetical protein 870316 4197678 RD1_0894 Roseobacter denitrificans OCh 114 hypothetical protein YP_681248.1 869504 R 375451 CDS YP_681249.1 110678242 4197679 complement(870313..871254) 1 NC_008209.1 hypothetical protein 871254 4197679 RD1_0895 Roseobacter denitrificans OCh 114 hypothetical protein YP_681249.1 870313 R 375451 CDS YP_681250.1 110678243 4197680 complement(871238..871783) 1 NC_008209.1 hypothetical protein 871783 4197680 RD1_0896 Roseobacter denitrificans OCh 114 hypothetical protein YP_681250.1 871238 R 375451 CDS YP_681251.1 110678244 4197681 complement(871783..872265) 1 NC_008209.1 hypothetical protein 872265 4197681 RD1_0897 Roseobacter denitrificans OCh 114 hypothetical protein YP_681251.1 871783 R 375451 CDS YP_681252.1 110678245 4197682 872428..873600 1 NC_008209.1 hypothetical protein 873600 4197682 RD1_0898 Roseobacter denitrificans OCh 114 hypothetical protein YP_681252.1 872428 D 375451 CDS YP_681253.1 110678246 4197683 873613..874584 1 NC_008209.1 hypothetical protein 874584 4197683 RD1_0899 Roseobacter denitrificans OCh 114 hypothetical protein YP_681253.1 873613 D 375451 CDS YP_681254.1 110678247 4197684 874616..875053 1 NC_008209.1 hypothetical protein 875053 4197684 RD1_0900 Roseobacter denitrificans OCh 114 hypothetical protein YP_681254.1 874616 D 375451 CDS YP_681255.1 110678248 4197685 875071..875322 1 NC_008209.1 hypothetical protein 875322 4197685 RD1_0901 Roseobacter denitrificans OCh 114 hypothetical protein YP_681255.1 875071 D 375451 CDS YP_681256.1 110678249 4197686 875312..876289 1 NC_008209.1 ABC transporter substrate-binding protein 876289 4197686 RD1_0902 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681256.1 875312 D 375451 CDS YP_681257.1 110678250 4197687 876273..877046 1 NC_008209.1 aliphatic sulfonates transport permease 877046 ssuC 4197687 ssuC Roseobacter denitrificans OCh 114 aliphatic sulfonates transport permease YP_681257.1 876273 D 375451 CDS YP_681258.1 110678251 4197688 877043..877642 1 NC_008209.1 ABC transporter 877642 4197688 RD1_0904 Roseobacter denitrificans OCh 114 ABC transporter YP_681258.1 877043 D 375451 CDS YP_681259.1 110678252 4197689 complement(877733..878827) 1 NC_008209.1 hypothetical protein 878827 4197689 RD1_0905 Roseobacter denitrificans OCh 114 hypothetical protein YP_681259.1 877733 R 375451 CDS YP_681260.1 110678253 4197690 complement(878830..879798) 1 NC_008209.1 hypothetical protein 879798 4197690 RD1_0906 Roseobacter denitrificans OCh 114 hypothetical protein YP_681260.1 878830 R 375451 CDS YP_681261.1 110678254 4197691 complement(879803..881326) 1 NC_008209.1 hypothetical protein 881326 4197691 RD1_0907 Roseobacter denitrificans OCh 114 hypothetical protein YP_681261.1 879803 R 375451 CDS YP_681262.1 110678255 4197692 881372..881812 1 NC_008209.1 hypothetical protein 881812 4197692 RD1_0908 Roseobacter denitrificans OCh 114 hypothetical protein YP_681262.1 881372 D 375451 CDS YP_681263.1 110678256 4197693 881931..882401 1 NC_008209.1 hypothetical protein 882401 4197693 RD1_0909 Roseobacter denitrificans OCh 114 hypothetical protein YP_681263.1 881931 D 375451 CDS YP_681264.1 110678257 4197694 complement(882462..882719) 1 NC_008209.1 hypothetical protein 882719 4197694 RD1_0910 Roseobacter denitrificans OCh 114 hypothetical protein YP_681264.1 882462 R 375451 CDS YP_681265.1 110678258 4197695 complement(882817..884043) 1 NC_008209.1 lipoprotein 884043 4197695 RD1_0911 Roseobacter denitrificans OCh 114 lipoprotein YP_681265.1 882817 R 375451 CDS YP_681266.1 110678259 4197696 complement(884072..884551) 1 NC_008209.1 hypothetical protein 884551 4197696 RD1_0912 Roseobacter denitrificans OCh 114 hypothetical protein YP_681266.1 884072 R 375451 CDS YP_681267.1 110678260 4197697 complement(884548..884721) 1 NC_008209.1 hypothetical protein 884721 4197697 RD1_0913 Roseobacter denitrificans OCh 114 hypothetical protein YP_681267.1 884548 R 375451 CDS YP_681268.1 110678261 4197698 complement(884718..884870) 1 NC_008209.1 hypothetical protein 884870 4197698 RD1_0914 Roseobacter denitrificans OCh 114 hypothetical protein YP_681268.1 884718 R 375451 CDS YP_681269.1 110678262 4197699 885057..886685 1 NC_008209.1 ferric iron ABC transporter permease 886685 4197699 RD1_0915 Roseobacter denitrificans OCh 114 ferric iron ABC transporter permease YP_681269.1 885057 D 375451 CDS YP_681270.1 110678263 4197700 complement(886740..887753) 1 NC_008209.1 iron ABC transporter substrate-binding protein 887753 4197700 RD1_0916 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_681270.1 886740 R 375451 CDS YP_681271.1 110678264 4197701 complement(887949..888830) 1 NC_008209.1 permease 888830 4197701 RD1_0917 Roseobacter denitrificans OCh 114 permease YP_681271.1 887949 R 375451 CDS YP_681272.1 110678265 4197702 889215..889652 1 NC_008209.1 HTH-type transcriptional regulator ZntR 889652 zntR 4197702 zntR Roseobacter denitrificans OCh 114 HTH-type transcriptional regulator ZntR YP_681272.1 889215 D 375451 CDS YP_681273.1 110678266 4197703 complement(889782..890717) 1 NC_008209.1 zinc/manganese/iron ABC transporter permease 890717 4197703 RD1_0919 Roseobacter denitrificans OCh 114 zinc/manganese/iron ABC transporter permease YP_681273.1 889782 R 375451 CDS YP_681274.1 110678267 4197704 complement(890717..891934) 1 NC_008209.1 zinc/manganese/iron ABC transporter permease 891934 4197704 RD1_0920 Roseobacter denitrificans OCh 114 zinc/manganese/iron ABC transporter permease YP_681274.1 890717 R 375451 CDS YP_681275.1 110678268 4197705 complement(891931..892764) 1 NC_008209.1 zinc ABC transporter ATP-binding protein 892764 troB 4197705 troB Roseobacter denitrificans OCh 114 zinc ABC transporter ATP-binding protein YP_681275.1 891931 R 375451 CDS YP_681276.1 110678269 4197706 complement(892761..893717) 1 NC_008209.1 metal ABC transporter substrate-binding protein 893717 4197706 RD1_0922 Roseobacter denitrificans OCh 114 metal ABC transporter substrate-binding protein YP_681276.1 892761 R 375451 CDS YP_681277.1 110678270 4197707 893899..894099 1 NC_008209.1 hypothetical protein 894099 4197707 RD1_0923 Roseobacter denitrificans OCh 114 hypothetical protein YP_681277.1 893899 D 375451 CDS YP_681278.1 110678271 4197708 894348..895721 1 NC_008209.1 ammonium transporter 895721 amt-2 4197708 amt-2 Roseobacter denitrificans OCh 114 ammonium transporter YP_681278.1 894348 D 375451 CDS YP_681279.1 110678272 4197709 895831..896565 1 NC_008209.1 GntR family transcriptional regulator 896565 gntR 4197709 gntR Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_681279.1 895831 D 375451 CDS YP_681280.1 110678273 4197710 complement(896652..896756) 1 NC_008209.1 hypothetical protein 896756 4197710 RD1_0926 Roseobacter denitrificans OCh 114 hypothetical protein YP_681280.1 896652 R 375451 CDS YP_681281.1 110678274 4197711 complement(896864..898342) 1 NC_008209.1 succinate-semialdehyde dehydrogenase 898342 gabD 4197711 gabD Roseobacter denitrificans OCh 114 succinate-semialdehyde dehydrogenase YP_681281.1 896864 R 375451 CDS YP_681282.1 110678275 4197712 898424..899206 1 NC_008209.1 hypothetical protein 899206 4197712 RD1_0928 Roseobacter denitrificans OCh 114 hypothetical protein YP_681282.1 898424 D 375451 CDS YP_681283.1 110678276 4197713 899332..900555 1 NC_008209.1 creatinase 900555 cln 4197713 cln Roseobacter denitrificans OCh 114 creatinase YP_681283.1 899332 D 375451 CDS YP_681284.1 110678277 4197714 900705..900968 1 NC_008209.1 hypothetical protein 900968 4197714 RD1_0930 Roseobacter denitrificans OCh 114 hypothetical protein YP_681284.1 900705 D 375451 CDS YP_681285.1 110678278 4197715 900979..901629 1 NC_008209.1 hypothetical protein 901629 4197715 RD1_0931 Roseobacter denitrificans OCh 114 hypothetical protein YP_681285.1 900979 D 375451 CDS YP_681286.1 110678279 4197716 complement(901640..902020) 1 NC_008209.1 HIT-like protein 902020 4197716 RD1_0932 Roseobacter denitrificans OCh 114 HIT-like protein YP_681286.1 901640 R 375451 CDS YP_681287.1 110678280 4197717 902105..902767 1 NC_008209.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 902767 smpB 4197717 smpB Roseobacter denitrificans OCh 114 SsrA-binding protein YP_681287.1 902105 D 375451 CDS YP_681288.1 110678281 4197718 902853..903707 1 NC_008209.1 3-mercaptopyruvate sulfurtransferase 903707 mst 4197718 mst Roseobacter denitrificans OCh 114 3-mercaptopyruvate sulfurtransferase YP_681288.1 902853 D 375451 CDS YP_681289.1 110678282 4197719 903707..904891 1 NC_008209.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 904891 tyrB 4197719 tyrB Roseobacter denitrificans OCh 114 aromatic amino acid aminotransferase YP_681289.1 903707 D 375451 CDS YP_681290.1 110678283 4197720 complement(905435..906781) 1 NC_008209.1 ammonium ABC transporter permease 906781 4197720 RD1_0936 Roseobacter denitrificans OCh 114 ammonium ABC transporter permease YP_681290.1 905435 R 375451 CDS YP_681291.1 110678284 4197721 complement(906809..907147) 1 NC_008209.1 nitrogen regulatory protein P-II 907147 glnB 4197721 glnB Roseobacter denitrificans OCh 114 nitrogen regulatory protein P-II YP_681291.1 906809 R 375451 CDS YP_681292.1 110678285 4197722 907404..909590 1 NC_008209.1 1A family penicillin-binding protein 909590 pbpC 4197722 pbpC Roseobacter denitrificans OCh 114 1A family penicillin-binding protein YP_681292.1 907404 D 375451 CDS YP_681293.1 110678286 4197723 complement(909602..910201) 1 NC_008209.1 toluene tolerance family protein 910201 4197723 RD1_0939 Roseobacter denitrificans OCh 114 toluene tolerance family protein YP_681293.1 909602 R 375451 CDS YP_681294.1 110678287 4197724 complement(910216..910986) 1 NC_008209.1 VacJ-like lipoprotein 910986 4197724 RD1_0940 Roseobacter denitrificans OCh 114 VacJ-like lipoprotein YP_681294.1 910216 R 375451 CDS YP_681295.1 110678288 4197725 911453..911911 1 NC_008209.1 endoribonuclease L-PSP family protein 911911 4197725 RD1_0941 Roseobacter denitrificans OCh 114 endoribonuclease L-PSP family protein YP_681295.1 911453 D 375451 CDS YP_681296.1 110678289 4197726 911908..912672 1 NC_008209.1 glycerophosphoryl diester phosphodiesterase 912672 4197726 RD1_0942 Roseobacter denitrificans OCh 114 glycerophosphoryl diester phosphodiesterase YP_681296.1 911908 D 375451 CDS YP_681297.1 110678290 4197727 912722..913909 1 NC_008209.1 hypothetical protein 913909 4197727 RD1_0943 Roseobacter denitrificans OCh 114 hypothetical protein YP_681297.1 912722 D 375451 CDS YP_681298.1 110678291 4197728 913906..914202 1 NC_008209.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 914202 phhB 4197728 phhB Roseobacter denitrificans OCh 114 pterin-4-alpha-carbinolamine dehydratase YP_681298.1 913906 D 375451 CDS YP_681299.1 110678292 4197729 914209..915054 1 NC_008209.1 hypothetical protein 915054 4197729 RD1_0945 Roseobacter denitrificans OCh 114 hypothetical protein YP_681299.1 914209 D 375451 CDS YP_681300.1 110678293 4197730 complement(915105..915593) 1 NC_008209.1 anti-oxidant AhpCTSA family protein 915593 4197730 RD1_0946 Roseobacter denitrificans OCh 114 anti-oxidant AhpCTSA family protein YP_681300.1 915105 R 375451 CDS YP_681301.1 110678294 4197731 915689..916897 1 NC_008209.1 pyridine nucleotide-disulfide oxidoreductase 916897 4197731 RD1_0947 Roseobacter denitrificans OCh 114 pyridine nucleotide-disulfide oxidoreductase YP_681301.1 915689 D 375451 CDS YP_681302.1 110678295 4197732 916894..917451 1 NC_008209.1 methyltransferase 917451 4197732 RD1_0948 Roseobacter denitrificans OCh 114 methyltransferase YP_681302.1 916894 D 375451 CDS YP_681303.1 110678296 4197733 complement(917647..918531) 1 NC_008209.1 methionine aminopeptidase 918531 map 4197733 map Roseobacter denitrificans OCh 114 methionine aminopeptidase YP_681303.1 917647 R 375451 CDS YP_681304.1 110678297 4197734 complement(918585..919292) 1 NC_008209.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 919292 sfsA 4197734 sfsA Roseobacter denitrificans OCh 114 sugar fermentation stimulation protein A YP_681304.1 918585 R 375451 CDS YP_681305.1 110678298 4197735 919343..920068 1 NC_008209.1 molybdopterin binding domain-containing protein 920068 4197735 RD1_0951 Roseobacter denitrificans OCh 114 molybdopterin binding domain-containing protein YP_681305.1 919343 D 375451 CDS YP_681306.1 110678299 4197736 920065..920805 1 NC_008209.1 acetyltransferase 920805 4197736 RD1_0952 Roseobacter denitrificans OCh 114 acetyltransferase YP_681306.1 920065 D 375451 CDS YP_681307.1 110678300 4197737 920798..921370 1 NC_008209.1 hypothetical protein 921370 4197737 RD1_0953 Roseobacter denitrificans OCh 114 hypothetical protein YP_681307.1 920798 D 375451 CDS YP_681308.1 110678301 4197738 921367..922326 1 NC_008209.1 OmpA family domain-containing protein 922326 4197738 RD1_0954 Roseobacter denitrificans OCh 114 OmpA family domain-containing protein YP_681308.1 921367 D 375451 CDS YP_681309.1 110678302 4197739 complement(922375..923283) 1 NC_008209.1 LysR family transcriptional regulator 923283 4197739 RD1_0955 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_681309.1 922375 R 375451 CDS YP_681310.1 110678303 4197740 923735..924178 1 NC_008209.1 hypothetical protein 924178 4197740 RD1_0956 Roseobacter denitrificans OCh 114 hypothetical protein YP_681310.1 923735 D 375451 CDS YP_681311.1 110678304 4197741 complement(924183..926210) 1 NC_008209.1 2,4-dienoyl-CoA reductase 926210 fadH 4197741 fadH Roseobacter denitrificans OCh 114 2,4-dienoyl-CoA reductase YP_681311.1 924183 R 375451 CDS YP_681312.1 110678305 4197742 926195..926371 1 NC_008209.1 hypothetical protein 926371 4197742 RD1_0958 Roseobacter denitrificans OCh 114 hypothetical protein YP_681312.1 926195 D 375451 CDS YP_681313.1 110678306 4197743 complement(926249..926428) 1 NC_008209.1 hypothetical protein 926428 4197743 RD1_0959 Roseobacter denitrificans OCh 114 hypothetical protein YP_681313.1 926249 R 375451 CDS YP_681314.1 110678307 4197744 926427..926909 1 NC_008209.1 hydrolase NUDIX family domain-containing protein 926909 4197744 RD1_0960 Roseobacter denitrificans OCh 114 hydrolase NUDIX family domain-containing protein YP_681314.1 926427 D 375451 CDS YP_681315.1 110678308 4197745 complement(926906..927502) 1 NC_008209.1 acetyltransferase 927502 4197745 RD1_0961 Roseobacter denitrificans OCh 114 acetyltransferase YP_681315.1 926906 R 375451 CDS YP_681316.1 110678309 4197746 complement(927505..928491) 1 NC_008209.1 PfkB family kinase 928491 4197746 RD1_0962 Roseobacter denitrificans OCh 114 PfkB family kinase YP_681316.1 927505 R 375451 CDS YP_681317.1 110678310 4197747 complement(928488..929234) 1 NC_008209.1 endonuclease III 929234 nth 4197747 nth Roseobacter denitrificans OCh 114 endonuclease III YP_681317.1 928488 R 375451 CDS YP_681318.1 110678311 4197748 929311..930177 1 NC_008209.1 ADA regulatory protein 930177 ada 4197748 ada Roseobacter denitrificans OCh 114 ADA regulatory protein YP_681318.1 929311 D 375451 CDS YP_681319.1 110678312 4197749 930192..930320 1 NC_008209.1 hypothetical protein 930320 4197749 RD1_0966 Roseobacter denitrificans OCh 114 hypothetical protein YP_681319.1 930192 D 375451 CDS YP_681320.1 110678313 4197750 930304..930969 1 NC_008209.1 OmpA family domain-containing protein 930969 4197750 RD1_0967 Roseobacter denitrificans OCh 114 OmpA family domain-containing protein YP_681320.1 930304 D 375451 CDS YP_681321.1 110678314 4197751 931072..931614 1 NC_008209.1 NADPH-dependent FMN reductase domain-containing protein 931614 4197751 RD1_0968 Roseobacter denitrificans OCh 114 NADPH-dependent FMN reductase domain-containing protein YP_681321.1 931072 D 375451 CDS YP_681322.1 110678315 4197752 complement(931632..932663) 1 NC_008209.1 oxidoreductase, FAD-binding 932663 4197752 RD1_0969 Roseobacter denitrificans OCh 114 oxidoreductase, FAD-binding YP_681322.1 931632 R 375451 CDS YP_681323.1 110678316 4197963 932727..933428 1 NC_008209.1 hypothetical protein 933428 4197963 RD1_0970 Roseobacter denitrificans OCh 114 hypothetical protein YP_681323.1 932727 D 375451 CDS YP_681324.1 110678317 4197964 complement(933430..935343) 1 NC_008209.1 Slt family transglycosylase 935343 4197964 RD1_0971 Roseobacter denitrificans OCh 114 Slt family transglycosylase YP_681324.1 933430 R 375451 CDS YP_681325.1 110678318 4197965 935530..936405 1 NC_008209.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 936405 dapA 4197965 dapA Roseobacter denitrificans OCh 114 dihydrodipicolinate synthase YP_681325.1 935530 D 375451 CDS YP_681326.1 110678319 4197966 complement(936492..937364) 1 NC_008209.1 anaerobic dimethyl sulfoxide reductase subunit C 937364 dmsC 4197966 dmsC Roseobacter denitrificans OCh 114 anaerobic dimethyl sulfoxide reductase subunit C YP_681326.1 936492 R 375451 CDS YP_681327.1 110678320 4197967 complement(937364..938122) 1 NC_008209.1 4Fe-4S ferredoxin 938122 4197967 RD1_0974 Roseobacter denitrificans OCh 114 4Fe-4S ferredoxin YP_681327.1 937364 R 375451 CDS YP_681328.1 110678321 4197968 complement(938208..941027) 1 NC_008209.1 thiosulfate reductase 941027 phsA 4197968 phsA Roseobacter denitrificans OCh 114 thiosulfate reductase YP_681328.1 938208 R 375451 CDS YP_681329.1 110678322 4197969 941047..941478 1 NC_008209.1 hypothetical protein 941478 4197969 RD1_0976 Roseobacter denitrificans OCh 114 hypothetical protein YP_681329.1 941047 D 375451 CDS YP_681330.1 110678323 4197970 complement(941444..943222) 1 NC_008209.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 943222 xsc 4197970 xsc Roseobacter denitrificans OCh 114 sulfoacetaldehyde acetyltransferase YP_681330.1 941444 R 375451 CDS YP_681331.1 110678324 4197971 complement(943316..944797) 1 NC_008209.1 GntR family transcriptional regulator 944797 4197971 RD1_0978 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_681331.1 943316 R 375451 CDS YP_681332.1 110678325 4197972 945033..945923 1 NC_008209.1 polyphosphate kinase 945923 ppk2 4197972 ppk2 Roseobacter denitrificans OCh 114 polyphosphate kinase YP_681332.1 945033 D 375451 CDS YP_681333.1 110678326 4197973 945947..946186 1 NC_008209.1 hypothetical protein 946186 4197973 RD1_0980 Roseobacter denitrificans OCh 114 hypothetical protein YP_681333.1 945947 D 375451 CDS YP_681334.1 110678327 4197974 complement(946277..947668) 1 NC_008209.1 taurine--pyruvate aminotransferase 947668 tpa 4197974 tpa Roseobacter denitrificans OCh 114 taurine--pyruvate aminotransferase YP_681334.1 946277 R 375451 CDS YP_681335.1 110678328 4197975 948318..949319 1 NC_008209.1 taurine ABC transporter substrate-binding protein 949319 tauA 4197975 tauA Roseobacter denitrificans OCh 114 taurine ABC transporter substrate-binding protein YP_681335.1 948318 D 375451 CDS YP_681336.1 110678329 4197976 949432..950238 1 NC_008209.1 taurine ABC transporter ATP-binding protein 950238 tauB 4197976 tauB Roseobacter denitrificans OCh 114 taurine ABC transporter ATP-binding protein YP_681336.1 949432 D 375451 CDS YP_681337.1 110678330 4197977 950235..951503 1 NC_008209.1 taurine ABC transporter permease 951503 tauC 4197977 tauC Roseobacter denitrificans OCh 114 taurine ABC transporter permease YP_681337.1 950235 D 375451 CDS YP_681338.1 110678331 4197978 951485..951598 1 NC_008209.1 hypothetical protein 951598 4197978 RD1_0985 Roseobacter denitrificans OCh 114 hypothetical protein YP_681338.1 951485 D 375451 CDS YP_681339.1 110678332 4197979 951649..951753 1 NC_008209.1 hypothetical protein 951753 4197979 RD1_0986 Roseobacter denitrificans OCh 114 hypothetical protein YP_681339.1 951649 D 375451 CDS YP_681340.1 110678333 4197980 951731..952783 1 NC_008209.1 fatty acid desaturase 952783 4197980 RD1_0987 Roseobacter denitrificans OCh 114 fatty acid desaturase YP_681340.1 951731 D 375451 CDS YP_681341.1 110678334 4197981 complement(952996..955113) 1 NC_008209.1 DEAD/DEAH box helicase 955113 deaD 4197981 deaD Roseobacter denitrificans OCh 114 DEAD/DEAH box helicase YP_681341.1 952996 R 375451 CDS YP_681342.1 110678335 4197944 955308..956246 1 NC_008209.1 branched-chain amino acid aminotransferase 956246 4197944 RD1_0990 Roseobacter denitrificans OCh 114 branched-chain amino acid aminotransferase YP_681342.1 955308 D 375451 CDS YP_681343.1 110678336 4197945 complement(956253..957581) 1 NC_008209.1 hypothetical protein 957581 4197945 RD1_0991 Roseobacter denitrificans OCh 114 hypothetical protein YP_681343.1 956253 R 375451 CDS YP_681344.1 110678337 4197946 957791..958105 1 NC_008209.1 ArsR family transcriptional regulator 958105 4197946 RD1_0992 Roseobacter denitrificans OCh 114 ArsR family transcriptional regulator YP_681344.1 957791 D 375451 CDS YP_681345.1 110678338 4197947 958180..959382 1 NC_008209.1 oxidoreductase 959382 4197947 RD1_0993 Roseobacter denitrificans OCh 114 oxidoreductase YP_681345.1 958180 D 375451 CDS YP_681346.1 110678339 4197949 complement(959637..959963) 1 NC_008209.1 hypothetical protein 959963 4197949 RD1_0995 Roseobacter denitrificans OCh 114 hypothetical protein YP_681346.1 959637 R 375451 CDS YP_681347.1 110678340 4197950 960096..960785 1 NC_008209.1 hypothetical protein 960785 4197950 RD1_0996 Roseobacter denitrificans OCh 114 hypothetical protein YP_681347.1 960096 D 375451 CDS YP_681348.1 110678341 4197951 960841..961485 1 NC_008209.1 transcriptional regulator 961485 4197951 RD1_0997 Roseobacter denitrificans OCh 114 transcriptional regulator YP_681348.1 960841 D 375451 CDS YP_681349.1 110678342 4197952 complement(961518..962480) 1 NC_008209.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 962480 accA 4197952 accA Roseobacter denitrificans OCh 114 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_681349.1 961518 R 375451 CDS YP_681350.1 110678343 4197953 complement(962539..963135) 1 NC_008209.1 amino acid transporter LysE 963135 4197953 RD1_0999 Roseobacter denitrificans OCh 114 amino acid transporter LysE YP_681350.1 962539 R 375451 CDS YP_681351.1 110678344 4197954 963208..963660 1 NC_008209.1 AsnC family transcriptional regulator 963660 4197954 RD1_1000 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_681351.1 963208 D 375451 CDS YP_681352.1 110678345 4197955 complement(963676..964632) 1 NC_008209.1 citrate lyase subunit beta 964632 citE 4197955 citE Roseobacter denitrificans OCh 114 citrate lyase subunit beta YP_681352.1 963676 R 375451 CDS YP_681353.1 110678346 4197956 964892..965893 1 NC_008209.1 hypothetical protein 965893 4197956 RD1_1002 Roseobacter denitrificans OCh 114 hypothetical protein YP_681353.1 964892 D 375451 CDS YP_681354.1 110678347 4197957 965932..966897 1 NC_008209.1 hypothetical protein 966897 4197957 RD1_1003 Roseobacter denitrificans OCh 114 hypothetical protein YP_681354.1 965932 D 375451 CDS YP_681355.1 110678348 4197958 966894..967760 1 NC_008209.1 D-alanine aminotransferase 967760 dat 4197958 dat Roseobacter denitrificans OCh 114 D-alanine aminotransferase YP_681355.1 966894 D 375451 CDS YP_681356.1 110678349 4197959 967826..968275 1 NC_008209.1 nodulation protein N-like protein 968275 nodN 4197959 nodN Roseobacter denitrificans OCh 114 nodulation protein N-like protein YP_681356.1 967826 D 375451 CDS YP_681357.1 110678350 4197960 complement(968353..968664) 1 NC_008209.1 hypothetical protein 968664 4197960 RD1_1006 Roseobacter denitrificans OCh 114 hypothetical protein YP_681357.1 968353 R 375451 CDS YP_681358.1 110678351 4197961 968887..970335 1 NC_008209.1 pyruvate kinase 970335 pyk 4197961 pyk Roseobacter denitrificans OCh 114 pyruvate kinase YP_681358.1 968887 D 375451 CDS YP_681359.1 110678352 4197962 complement(970370..971116) 1 NC_008209.1 hypothetical protein 971116 4197962 RD1_1008 Roseobacter denitrificans OCh 114 hypothetical protein YP_681359.1 970370 R 375451 CDS YP_681360.1 110678353 4198255 971357..971557 1 NC_008209.1 50S ribosomal protein L35 971557 rpmI 4198255 rpmI Roseobacter denitrificans OCh 114 50S ribosomal protein L35 YP_681360.1 971357 D 375451 CDS YP_681361.1 110678354 4198256 971570..971935 1 NC_008209.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 971935 rplT 4198256 rplT Roseobacter denitrificans OCh 114 50S ribosomal protein L20 YP_681361.1 971570 D 375451 CDS YP_681362.1 110678355 4198257 972360..973028 1 NC_008209.1 hypothetical protein 973028 4198257 RD1_1011 Roseobacter denitrificans OCh 114 hypothetical protein YP_681362.1 972360 D 375451 CDS YP_681363.1 110678356 4198258 973220..974293 1 NC_008209.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 974293 pheS 4198258 pheS Roseobacter denitrificans OCh 114 phenylalanyl-tRNA synthetase subunit alpha YP_681363.1 973220 D 375451 CDS YP_681364.1 110678357 4198259 974748..977147 1 NC_008209.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 977147 pheT 4198259 pheT Roseobacter denitrificans OCh 114 phenylalanyl-tRNA synthetase subunit beta YP_681364.1 974748 D 375451 CDS YP_681365.1 110678358 4198260 977204..977653 1 NC_008209.1 hypothetical protein 977653 4198260 RD1_1014 Roseobacter denitrificans OCh 114 hypothetical protein YP_681365.1 977204 D 375451 CDS YP_681366.1 110678359 4198261 977823..978251 1 NC_008209.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 978251 mscL 4198261 mscL Roseobacter denitrificans OCh 114 large-conductance mechanosensitive channel YP_681366.1 977823 D 375451 CDS YP_681367.1 110678360 4198262 complement(978448..979773) 1 NC_008209.1 hypothetical protein 979773 4198262 RD1_1016 Roseobacter denitrificans OCh 114 hypothetical protein YP_681367.1 978448 R 375451 CDS YP_681368.1 110678361 4198263 complement(979770..979916) 1 NC_008209.1 hypothetical protein 979916 4198263 RD1_1017 Roseobacter denitrificans OCh 114 hypothetical protein YP_681368.1 979770 R 375451 CDS YP_681369.1 110678362 4198264 980171..982012 1 NC_008209.1 serine proteinase 982012 4198264 RD1_1018 Roseobacter denitrificans OCh 114 serine proteinase YP_681369.1 980171 D 375451 CDS YP_681370.1 110678363 4198265 982025..983314 1 NC_008209.1 hypothetical protein 983314 4198265 RD1_1019 Roseobacter denitrificans OCh 114 hypothetical protein YP_681370.1 982025 D 375451 CDS YP_681371.1 110678364 4198266 983314..986430 1 NC_008209.1 hypothetical protein 986430 4198266 RD1_1020 Roseobacter denitrificans OCh 114 hypothetical protein YP_681371.1 983314 D 375451 CDS YP_681372.1 110678365 4198267 986461..989160 1 NC_008209.1 hypothetical protein 989160 4198267 RD1_1021 Roseobacter denitrificans OCh 114 hypothetical protein YP_681372.1 986461 D 375451 CDS YP_681373.1 110678366 4198268 989247..990197 1 NC_008209.1 hypothetical protein 990197 4198268 RD1_1023 Roseobacter denitrificans OCh 114 hypothetical protein YP_681373.1 989247 D 375451 CDS YP_681374.1 110678367 4198269 990208..992115 1 NC_008209.1 hypothetical protein 992115 4198269 RD1_1024 Roseobacter denitrificans OCh 114 hypothetical protein YP_681374.1 990208 D 375451 CDS YP_681375.1 110678368 4198270 992125..992904 1 NC_008209.1 ABC transporter ATP-binding protein 992904 4198270 RD1_1025 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681375.1 992125 D 375451 CDS YP_681376.1 110678369 4198271 992904..994100 1 NC_008209.1 ABC transporter permease 994100 4198271 RD1_1026 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681376.1 992904 D 375451 CDS YP_681377.1 110678370 4198272 994097..995656 1 NC_008209.1 hypothetical protein 995656 4198272 RD1_1027 Roseobacter denitrificans OCh 114 hypothetical protein YP_681377.1 994097 D 375451 CDS YP_681378.1 110678371 4198273 complement(995763..996659) 1 NC_008209.1 hypothetical protein 996659 4198273 RD1_1028 Roseobacter denitrificans OCh 114 hypothetical protein YP_681378.1 995763 R 375451 CDS YP_681379.1 110678372 4198274 complement(996656..997612) 1 NC_008209.1 hypothetical protein 997612 4198274 RD1_1029 Roseobacter denitrificans OCh 114 hypothetical protein YP_681379.1 996656 R 375451 CDS YP_681380.1 110678373 4198275 997690..998346 1 NC_008209.1 hypothetical protein 998346 4198275 RD1_1030 Roseobacter denitrificans OCh 114 hypothetical protein YP_681380.1 997690 D 375451 CDS YP_681381.1 110678374 4198276 998478..999623 1 NC_008209.1 Rieske (2Fe-2S) domain-containing protein 999623 4198276 RD1_1031 Roseobacter denitrificans OCh 114 Rieske (2Fe-2S) domain-containing protein YP_681381.1 998478 D 375451 CDS YP_681382.1 110678375 4198277 999682..1000089 1 NC_008209.1 hypothetical protein 1000089 4198277 RD1_1032 Roseobacter denitrificans OCh 114 hypothetical protein YP_681382.1 999682 D 375451 CDS YP_681383.1 110678376 4198278 complement(1000161..1001279) 1 NC_008209.1 alanine dehydrogenase 1001279 ald 4198278 ald Roseobacter denitrificans OCh 114 alanine dehydrogenase YP_681383.1 1000161 R 375451 CDS YP_681384.1 110678377 4198279 1001415..1001879 1 NC_008209.1 AsnC family transcriptional regulator 1001879 4198279 RD1_1034 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_681384.1 1001415 D 375451 CDS YP_681385.1 110678378 4198280 1001879..1002481 1 NC_008209.1 hypothetical protein 1002481 4198280 RD1_1035 Roseobacter denitrificans OCh 114 hypothetical protein YP_681385.1 1001879 D 375451 CDS YP_681386.1 110678379 4198281 complement(1002646..1002765) 1 NC_008209.1 hypothetical protein 1002765 4198281 RD1_1036 Roseobacter denitrificans OCh 114 hypothetical protein YP_681386.1 1002646 R 375451 CDS YP_681387.1 110678380 4198282 1002748..1002879 1 NC_008209.1 hypothetical protein 1002879 4198282 RD1_1037 Roseobacter denitrificans OCh 114 hypothetical protein YP_681387.1 1002748 D 375451 CDS YP_681388.1 110678381 4198283 1002966..1003664 1 NC_008209.1 hypothetical protein 1003664 4198283 RD1_1038 Roseobacter denitrificans OCh 114 hypothetical protein YP_681388.1 1002966 D 375451 CDS YP_681389.1 110678382 4198284 1003728..1004714 1 NC_008209.1 alcohol dehydrogenase 1004714 4198284 RD1_1040 Roseobacter denitrificans OCh 114 alcohol dehydrogenase YP_681389.1 1003728 D 375451 CDS YP_681390.1 110678383 4198285 1004749..1005723 1 NC_008209.1 quinone oxidoreductase 1005723 qor 4198285 qor Roseobacter denitrificans OCh 114 quinone oxidoreductase YP_681390.1 1004749 D 375451 CDS YP_681391.1 110678384 4198286 complement(1005720..1006349) 1 NC_008209.1 ribonuclease T2 family protein 1006349 4198286 RD1_1042 Roseobacter denitrificans OCh 114 ribonuclease T2 family protein YP_681391.1 1005720 R 375451 CDS YP_681392.1 110678385 4198287 1006487..1007263 1 NC_008209.1 hypothetical protein 1007263 4198287 RD1_1043 Roseobacter denitrificans OCh 114 hypothetical protein YP_681392.1 1006487 D 375451 CDS YP_681393.1 110678386 4198288 1007399..1007740 1 NC_008209.1 endoribonuclease L-PSP family protein 1007740 4198288 RD1_1044 Roseobacter denitrificans OCh 114 endoribonuclease L-PSP family protein YP_681393.1 1007399 D 375451 CDS YP_681394.1 110678387 4198289 complement(1007851..1008444) 1 NC_008209.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1008444 recR 4198289 recR Roseobacter denitrificans OCh 114 recombination protein RecR YP_681394.1 1007851 R 375451 CDS YP_681395.1 110678388 4198290 complement(1008501..1008845) 1 NC_008209.1 hypothetical protein 1008845 4198290 RD1_1046 Roseobacter denitrificans OCh 114 hypothetical protein YP_681395.1 1008501 R 375451 CDS YP_681396.1 110678389 4198291 complement(1008911..1010659) 1 NC_008209.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1010659 dnaX 4198291 dnaX Roseobacter denitrificans OCh 114 DNA polymerase III subunits gamma and tau YP_681396.1 1008911 R 375451 CDS YP_681397.1 110678390 4198292 complement(1010849..1011895) 1 NC_008209.1 L-idonate 5-dehydrogenase 1011895 idnD 4198292 idnD Roseobacter denitrificans OCh 114 L-idonate 5-dehydrogenase YP_681397.1 1010849 R 375451 CDS YP_681398.1 110678391 4198293 complement(1011908..1013185) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 1013185 4198293 RD1_1049 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_681398.1 1011908 R 375451 CDS YP_681399.1 110678392 4198294 complement(1013188..1013682) 1 NC_008209.1 TRAP dicarboxylate transporter DctQ subunit 1013682 4198294 RD1_1051 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter DctQ subunit YP_681399.1 1013188 R 375451 CDS YP_681400.1 110678393 4198295 complement(1013751..1014728) 1 NC_008209.1 C4-dicarboxylate transport system, substrate-binding protein 1014728 4198295 RD1_1052 Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, substrate-binding protein YP_681400.1 1013751 R 375451 CDS YP_681401.1 110678394 4198296 complement(1014745..1015470) 1 NC_008209.1 GntR family transcriptional regulator 1015470 4198296 RD1_1053 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_681401.1 1014745 R 375451 CDS YP_681402.1 110678395 4198297 complement(1015660..1016475) 1 NC_008209.1 phosphonate ABC transporter permease 1016475 4198297 RD1_1054 Roseobacter denitrificans OCh 114 phosphonate ABC transporter permease YP_681402.1 1015660 R 375451 CDS YP_681403.1 110678396 4198298 complement(1016475..1017296) 1 NC_008209.1 phosphonate ABC transporter permease 1017296 phnE 4198298 phnE Roseobacter denitrificans OCh 114 phosphonate ABC transporter permease YP_681403.1 1016475 R 375451 CDS YP_681404.1 110678397 4198299 complement(1017293..1018084) 1 NC_008209.1 phosphonate ABC transporter ATP-binding protein 1018084 phnC 4198299 phnC Roseobacter denitrificans OCh 114 phosphonate ABC transporter ATP-binding protein YP_681404.1 1017293 R 375451 CDS YP_681405.1 110678398 4198300 complement(1018152..1019126) 1 NC_008209.1 phosphonate ABC transporter substrate-binding protein 1019126 phnD 4198300 phnD Roseobacter denitrificans OCh 114 phosphonate ABC transporter substrate-binding protein YP_681405.1 1018152 R 375451 CDS YP_681406.1 110678399 4198301 1019268..1019378 1 NC_008209.1 hypothetical protein 1019378 4198301 RD1_1058 Roseobacter denitrificans OCh 114 hypothetical protein YP_681406.1 1019268 D 375451 CDS YP_681407.1 110678400 4198302 1019553..1020578 1 NC_008209.1 iron ABC transporter substrate-binding protein 1020578 4198302 RD1_1059 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_681407.1 1019553 D 375451 CDS YP_681408.1 110678401 4198303 1020582..1022801 1 NC_008209.1 iron ABC transporter permease 1022801 4198303 RD1_1060 Roseobacter denitrificans OCh 114 iron ABC transporter permease YP_681408.1 1020582 D 375451 CDS YP_681409.1 110678402 4198304 1022798..1023874 1 NC_008209.1 Fe-ABC transporter ATP-binding protein 1023874 fbpC 4198304 fbpC Roseobacter denitrificans OCh 114 Fe-ABC transporter ATP-binding protein YP_681409.1 1022798 D 375451 CDS YP_681410.1 110678403 4198305 1023875..1024438 1 NC_008209.1 phosphoglycerate mutase 1024438 4198305 RD1_1062 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_681410.1 1023875 D 375451 CDS YP_681411.1 110678404 4198307 1024946..1025125 1 NC_008209.1 hypothetical protein 1025125 4198307 RD1_1064 Roseobacter denitrificans OCh 114 hypothetical protein YP_681411.1 1024946 D 375451 CDS YP_681412.1 110678405 4198308 1025130..1026398 1 NC_008209.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1026398 murA 4198308 murA Roseobacter denitrificans OCh 114 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_681412.1 1025130 D 375451 CDS YP_681413.1 110678406 4198309 1026398..1026865 1 NC_008209.1 hypothetical protein 1026865 4198309 RD1_1066 Roseobacter denitrificans OCh 114 hypothetical protein YP_681413.1 1026398 D 375451 CDS YP_681414.1 110678407 4198310 1026911..1028224 1 NC_008209.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1028224 hisD 4198310 hisD Roseobacter denitrificans OCh 114 histidinol dehydrogenase YP_681414.1 1026911 D 375451 CDS YP_681415.1 110678408 4198311 1028294..1028773 1 NC_008209.1 hypothetical protein 1028773 4198311 RD1_1069 Roseobacter denitrificans OCh 114 hypothetical protein YP_681415.1 1028294 D 375451 CDS YP_681416.1 110678409 4198349 1028774..1029235 1 NC_008209.1 arsenate reductase 1029235 arsC 4198349 arsC Roseobacter denitrificans OCh 114 arsenate reductase YP_681416.1 1028774 D 375451 CDS YP_681417.1 110678410 4198350 complement(1029242..1030804) 1 NC_008209.1 cyclooxygenase 1030804 4198350 RD1_1072 Roseobacter denitrificans OCh 114 cyclooxygenase YP_681417.1 1029242 R 375451 CDS YP_681418.1 110678411 4198351 1030990..1031304 1 NC_008209.1 hypothetical protein 1031304 4198351 RD1_1073 Roseobacter denitrificans OCh 114 hypothetical protein YP_681418.1 1030990 D 375451 CDS YP_681419.1 110678412 4198352 1031350..1031757 1 NC_008209.1 hypothetical protein 1031757 4198352 RD1_1074 Roseobacter denitrificans OCh 114 hypothetical protein YP_681419.1 1031350 D 375451 CDS YP_681420.1 110678413 4198353 1031747..1032334 1 NC_008209.1 hypothetical protein 1032334 4198353 RD1_1075 Roseobacter denitrificans OCh 114 hypothetical protein YP_681420.1 1031747 D 375451 CDS YP_681421.1 110678414 4198354 complement(1032339..1032740) 1 NC_008209.1 hypothetical protein 1032740 4198354 RD1_1076 Roseobacter denitrificans OCh 114 hypothetical protein YP_681421.1 1032339 R 375451 CDS YP_681422.1 110678415 4198355 complement(1032815..1034092) 1 NC_008209.1 hypothetical protein 1034092 4198355 RD1_1077 Roseobacter denitrificans OCh 114 hypothetical protein YP_681422.1 1032815 R 375451 CDS YP_681423.1 110678416 4198356 1034091..1034384 1 NC_008209.1 modification methylase 1034384 4198356 RD1_1078 Roseobacter denitrificans OCh 114 modification methylase YP_681423.1 1034091 D 375451 CDS YP_681424.1 110678417 4198357 complement(1034399..1035049) 1 NC_008209.1 DNA methyltransferase 1035049 4198357 RD1_1079 Roseobacter denitrificans OCh 114 DNA methyltransferase YP_681424.1 1034399 R 375451 CDS YP_681425.1 110678418 4198358 complement(1035049..1035729) 1 NC_008209.1 hypothetical protein 1035729 4198358 RD1_1080 Roseobacter denitrificans OCh 114 hypothetical protein YP_681425.1 1035049 R 375451 CDS YP_681426.1 110678419 4198359 1035772..1037571 1 NC_008209.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1037571 lepA 4198359 lepA Roseobacter denitrificans OCh 114 GTP-binding protein LepA YP_681426.1 1035772 D 375451 CDS YP_681427.1 110678420 4198360 1037678..1038313 1 NC_008209.1 hypothetical protein 1038313 4198360 RD1_1082 Roseobacter denitrificans OCh 114 hypothetical protein YP_681427.1 1037678 D 375451 CDS YP_681428.1 110678421 4198361 1038647..1038826 1 NC_008209.1 hypothetical protein 1038826 4198361 RD1_1083 Roseobacter denitrificans OCh 114 hypothetical protein YP_681428.1 1038647 D 375451 CDS YP_681429.1 110678422 4198362 1038887..1039201 1 NC_008209.1 hypothetical protein 1039201 4198362 RD1_1084 Roseobacter denitrificans OCh 114 hypothetical protein YP_681429.1 1038887 D 375451 CDS YP_681430.1 110678423 4198363 complement(1039244..1039360) 1 NC_008209.1 EcnA/B family entericidin 1039360 4198363 RD1_1085 Roseobacter denitrificans OCh 114 EcnA/B family entericidin YP_681430.1 1039244 R 375451 CDS YP_681431.1 110678424 4198364 complement(1039587..1040066) 1 NC_008209.1 hypothetical protein 1040066 4198364 RD1_1087 Roseobacter denitrificans OCh 114 hypothetical protein YP_681431.1 1039587 R 375451 CDS YP_681432.1 110678425 4198365 complement(1040063..1040677) 1 NC_008209.1 hypothetical protein 1040677 4198365 RD1_1088 Roseobacter denitrificans OCh 114 hypothetical protein YP_681432.1 1040063 R 375451 CDS YP_681433.1 110678426 4198366 complement(1040700..1040840) 1 NC_008209.1 hypothetical protein 1040840 4198366 RD1_1089 Roseobacter denitrificans OCh 114 hypothetical protein YP_681433.1 1040700 R 375451 CDS YP_681434.1 110678427 4198367 complement(1040815..1041963) 1 NC_008209.1 hypothetical protein 1041963 4198367 RD1_1090 Roseobacter denitrificans OCh 114 hypothetical protein YP_681434.1 1040815 R 375451 CDS YP_681435.1 110678428 4198368 complement(1041960..1042544) 1 NC_008209.1 phosphoglycerate mutase 1042544 4198368 RD1_1092 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_681435.1 1041960 R 375451 CDS YP_681436.1 110678429 4197579 complement(1042541..1043617) 1 NC_008209.1 glycosyltransferase 1043617 4197579 RD1_1093 Roseobacter denitrificans OCh 114 glycosyltransferase YP_681436.1 1042541 R 375451 CDS YP_681437.1 110678430 4197580 complement(1043614..1044861) 1 NC_008209.1 glycosyl transferase family protein 1044861 4197580 RD1_1094 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_681437.1 1043614 R 375451 CDS YP_681438.1 110678431 4197581 complement(1044858..1046090) 1 NC_008209.1 hypothetical protein 1046090 4197581 RD1_1095 Roseobacter denitrificans OCh 114 hypothetical protein YP_681438.1 1044858 R 375451 CDS YP_681439.1 110678432 4197582 1046348..1048726 1 NC_008209.1 mechanosensitive ion channel protein 1048726 4197582 RD1_1096 Roseobacter denitrificans OCh 114 mechanosensitive ion channel protein YP_681439.1 1046348 D 375451 CDS YP_681440.1 110678433 4197583 1048926..1049036 1 NC_008209.1 hypothetical protein 1049036 4197583 RD1_1097 Roseobacter denitrificans OCh 114 hypothetical protein YP_681440.1 1048926 D 375451 CDS YP_681441.1 110678434 4197584 complement(1049060..1049737) 1 NC_008209.1 hypothetical protein 1049737 4197584 RD1_1098 Roseobacter denitrificans OCh 114 hypothetical protein YP_681441.1 1049060 R 375451 CDS YP_681442.1 110678435 4197585 complement(1050004..1051158) 1 NC_008209.1 oligopeptide ABC transporter permease 1051158 4197585 RD1_1099 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter permease YP_681442.1 1050004 R 375451 CDS YP_681443.1 110678436 4197586 complement(1051155..1052183) 1 NC_008209.1 oligopeptide ABC transporter permease 1052183 4197586 RD1_1100 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter permease YP_681443.1 1051155 R 375451 CDS YP_681444.1 110678437 4197587 complement(1052180..1054105) 1 NC_008209.1 peptide ABC transporter substrate-binding protein 1054105 4197587 RD1_1101 Roseobacter denitrificans OCh 114 peptide ABC transporter substrate-binding protein YP_681444.1 1052180 R 375451 CDS YP_681445.1 110678438 4197588 complement(1054098..1055873) 1 NC_008209.1 ABC transporter ATP-binding protein 1055873 4197588 RD1_1102 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681445.1 1054098 R 375451 CDS YP_681446.1 110678439 4197589 1055981..1056529 1 NC_008209.1 hypothetical protein 1056529 4197589 RD1_1103 Roseobacter denitrificans OCh 114 hypothetical protein YP_681446.1 1055981 D 375451 CDS YP_681447.1 110678440 4197590 complement(1056551..1057243) 1 NC_008209.1 ribulose-5-phosphate 3-epimerase 1057243 rpe 4197590 rpe Roseobacter denitrificans OCh 114 ribulose-5-phosphate 3-epimerase YP_681447.1 1056551 R 375451 CDS YP_681448.1 110678441 4197591 complement(1057382..1059079) 1 NC_008209.1 long chain fatty acid acyl-CoA ligase 1059079 4197591 RD1_1106 Roseobacter denitrificans OCh 114 long chain fatty acid acyl-CoA ligase YP_681448.1 1057382 R 375451 CDS YP_681449.1 110678442 4197592 complement(1059172..1059921) 1 NC_008209.1 hypothetical protein 1059921 4197592 RD1_1107 Roseobacter denitrificans OCh 114 hypothetical protein YP_681449.1 1059172 R 375451 CDS YP_681450.1 110678443 4197593 complement(1059989..1061020) 1 NC_008209.1 L-idonate 5-dehydrogenase 1061020 idnD 4197593 idnD Roseobacter denitrificans OCh 114 L-idonate 5-dehydrogenase YP_681450.1 1059989 R 375451 CDS YP_681451.1 110678444 4197594 1061133..1061891 1 NC_008209.1 catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate; gluconate 5-dehydrogenase 1061891 idnO 4197594 idnO Roseobacter denitrificans OCh 114 gluconate 5-dehydrogenase YP_681451.1 1061133 D 375451 CDS YP_681452.1 110678445 4197595 1061940..1062599 1 NC_008209.1 hypothetical protein 1062599 4197595 RD1_1110 Roseobacter denitrificans OCh 114 hypothetical protein YP_681452.1 1061940 D 375451 CDS YP_681453.1 110678446 4197596 complement(1062596..1063993) 1 NC_008209.1 exonuclease 1063993 4197596 RD1_1111 Roseobacter denitrificans OCh 114 exonuclease YP_681453.1 1062596 R 375451 CDS YP_681454.1 110678447 4197597 complement(1063995..1064519) 1 NC_008209.1 hypothetical protein 1064519 4197597 RD1_1112 Roseobacter denitrificans OCh 114 hypothetical protein YP_681454.1 1063995 R 375451 CDS YP_681455.1 110678448 4197559 complement(1064553..1066379) 1 NC_008209.1 nucleotidyltransferase 1066379 4197559 RD1_1113 Roseobacter denitrificans OCh 114 nucleotidyltransferase YP_681455.1 1064553 R 375451 CDS YP_681456.1 110678449 4197560 complement(1066473..1068275) 1 NC_008209.1 sodium symporter 1068275 4197560 RD1_1114 Roseobacter denitrificans OCh 114 sodium symporter YP_681456.1 1066473 R 375451 CDS YP_681457.1 110678450 4197561 complement(1068279..1068563) 1 NC_008209.1 hypothetical protein 1068563 4197561 RD1_1115 Roseobacter denitrificans OCh 114 hypothetical protein YP_681457.1 1068279 R 375451 CDS YP_681458.1 110678451 4197562 complement(1068620..1069306) 1 NC_008209.1 adenylate kinase 1069306 adk-2 4197562 adk-2 Roseobacter denitrificans OCh 114 adenylate kinase YP_681458.1 1068620 R 375451 CDS YP_681459.1 110678452 4197563 complement(1069311..1071233) 1 NC_008209.1 acetyl-coenzyme A synthetase 1071233 acsA 4197563 acsA Roseobacter denitrificans OCh 114 acetyl-coenzyme A synthetase YP_681459.1 1069311 R 375451 CDS YP_681460.1 110678453 4197564 1071707..1072297 1 NC_008209.1 ErfK/YbiS/YcfS/YnhG family protein 1072297 4197564 RD1_1118 Roseobacter denitrificans OCh 114 ErfK/YbiS/YcfS/YnhG family protein YP_681460.1 1071707 D 375451 CDS YP_681461.1 110678454 4197565 1072516..1073412 1 NC_008209.1 rarD protein 1073412 rarD 4197565 rarD Roseobacter denitrificans OCh 114 rarD protein YP_681461.1 1072516 D 375451 CDS YP_681462.1 110678455 4197566 complement(1073413..1074546) 1 NC_008209.1 peptidoglycan binding domain-containing protein 1074546 4197566 RD1_1120 Roseobacter denitrificans OCh 114 peptidoglycan binding domain-containing protein YP_681462.1 1073413 R 375451 CDS YP_681463.1 110678456 4197567 1075024..1083273 1 NC_008209.1 hypothetical protein 1083273 4197567 RD1_1121 Roseobacter denitrificans OCh 114 hypothetical protein YP_681463.1 1075024 D 375451 CDS YP_681464.1 110678457 4197568 1083101..1085944 1 NC_008209.1 hypothetical protein 1085944 4197568 RD1_1122 Roseobacter denitrificans OCh 114 hypothetical protein YP_681464.1 1083101 D 375451 CDS YP_681465.1 110678458 4197569 complement(1085941..1087248) 1 NC_008209.1 HlyD family secretion protein 1087248 4197569 RD1_1123 Roseobacter denitrificans OCh 114 HlyD family secretion protein YP_681465.1 1085941 R 375451 CDS YP_681466.1 110678459 4197570 complement(1087245..1089515) 1 NC_008209.1 toxin secretion ABC transporter ATP-binding component 1089515 4197570 RD1_1124 Roseobacter denitrificans OCh 114 toxin secretion ABC transporter ATP-binding component YP_681466.1 1087245 R 375451 CDS YP_681467.1 110678460 4197571 complement(1089512..1090924) 1 NC_008209.1 agglutination protein 1090924 aggA 4197571 aggA Roseobacter denitrificans OCh 114 agglutination protein YP_681467.1 1089512 R 375451 CDS YP_681468.1 110678461 4197572 1091113..1091778 1 NC_008209.1 OmpA family domain-containing protein 1091778 4197572 RD1_1126 Roseobacter denitrificans OCh 114 OmpA family domain-containing protein YP_681468.1 1091113 D 375451 CDS YP_681469.1 110678462 4197573 1091883..1092440 1 NC_008209.1 hypothetical protein 1092440 4197573 RD1_1127 Roseobacter denitrificans OCh 114 hypothetical protein YP_681469.1 1091883 D 375451 CDS YP_681470.1 110678463 4197574 1092548..1093390 1 NC_008209.1 hypothetical protein 1093390 4197574 RD1_1128 Roseobacter denitrificans OCh 114 hypothetical protein YP_681470.1 1092548 D 375451 CDS YP_681471.1 110678464 4197575 complement(1093480..1094286) 1 NC_008209.1 serine acetyltransferase 1094286 cysE 4197575 cysE Roseobacter denitrificans OCh 114 serine acetyltransferase YP_681471.1 1093480 R 375451 CDS YP_681472.1 110678465 4197576 complement(1094289..1095221) 1 NC_008209.1 hypothetical protein 1095221 4197576 RD1_1130 Roseobacter denitrificans OCh 114 hypothetical protein YP_681472.1 1094289 R 375451 CDS YP_681473.1 110678466 4197577 complement(1095302..1095523) 1 NC_008209.1 tautomerase 1095523 4197577 RD1_1131 Roseobacter denitrificans OCh 114 tautomerase YP_681473.1 1095302 R 375451 CDS YP_681474.1 110678467 4197578 complement(1095528..1095911) 1 NC_008209.1 hypothetical protein 1095911 4197578 RD1_1132 Roseobacter denitrificans OCh 114 hypothetical protein YP_681474.1 1095528 R 375451 CDS YP_681475.1 110678468 4197541 complement(1095908..1096516) 1 NC_008209.1 glutathione S-transferase 1096516 gst 4197541 gst Roseobacter denitrificans OCh 114 glutathione S-transferase YP_681475.1 1095908 R 375451 CDS YP_681476.1 110678469 4197542 1096623..1097513 1 NC_008209.1 LysR family transcriptional regulator 1097513 4197542 RD1_1134 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_681476.1 1096623 D 375451 CDS YP_681477.1 110678470 4197543 complement(1097607..1098203) 1 NC_008209.1 HTH-type transcriptional regulator acrR 1098203 4197543 RD1_1135 Roseobacter denitrificans OCh 114 HTH-type transcriptional regulator acrR YP_681477.1 1097607 R 375451 CDS YP_681478.1 110678471 4197544 1098287..1098916 1 NC_008209.1 hypothetical protein 1098916 4197544 RD1_1136 Roseobacter denitrificans OCh 114 hypothetical protein YP_681478.1 1098287 D 375451 CDS YP_681479.1 110678472 4197545 1098929..1099060 1 NC_008209.1 hypothetical protein 1099060 4197545 RD1_1137 Roseobacter denitrificans OCh 114 hypothetical protein YP_681479.1 1098929 D 375451 CDS YP_681480.1 110678473 4197546 complement(1099378..1099566) 1 NC_008209.1 hypothetical protein 1099566 4197546 RD1_1138 Roseobacter denitrificans OCh 114 hypothetical protein YP_681480.1 1099378 R 375451 CDS YP_681481.1 110678474 4197547 complement(1099933..1105137) 1 NC_008209.1 hypothetical protein 1105137 4197547 RD1_1140 Roseobacter denitrificans OCh 114 hypothetical protein YP_681481.1 1099933 R 375451 CDS YP_681482.1 110678475 4197548 1105366..1105665 1 NC_008209.1 hypothetical protein 1105665 4197548 RD1_1142 Roseobacter denitrificans OCh 114 hypothetical protein YP_681482.1 1105366 D 375451 CDS YP_681483.1 110678476 4197549 1106443..1106709 1 NC_008209.1 hypothetical protein 1106709 4197549 RD1_1143 Roseobacter denitrificans OCh 114 hypothetical protein YP_681483.1 1106443 D 375451 CDS YP_681484.2 162139375 4197550 1106745..1107557 1 NC_008209.1 integrase catalytic subunit 1107557 4197550 RD1_1144 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_681484.2 1106745 D 375451 CDS YP_681485.1 110678478 4197551 complement(1107704..1108630) 1 NC_008209.1 hypothetical protein 1108630 4197551 RD1_1145 Roseobacter denitrificans OCh 114 hypothetical protein YP_681485.1 1107704 R 375451 CDS YP_681486.1 110678479 4197554 complement(1111422..1112258) 1 NC_008209.1 glycosyltransferase 1112258 4197554 RD1_1149 Roseobacter denitrificans OCh 114 glycosyltransferase YP_681486.1 1111422 R 375451 CDS YP_681487.1 110678480 4197555 complement(1112322..1113428) 1 NC_008209.1 pyrroloquinoline quinone biosynthesis protein PqqE 1113428 pqqE 4197555 pqqE Roseobacter denitrificans OCh 114 pyrroloquinoline quinone biosynthesis protein PqqE YP_681487.1 1112322 R 375451 CDS YP_681488.1 110678481 4197556 complement(1113425..1113700) 1 NC_008209.1 coenzyme PQQ synthesis protein D 1113700 pqqD 4197556 pqqD Roseobacter denitrificans OCh 114 coenzyme PQQ synthesis protein D YP_681488.1 1113425 R 375451 CDS YP_681489.1 110678482 4197557 complement(1113702..1114451) 1 NC_008209.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 1114451 pqqC 4197557 pqqC Roseobacter denitrificans OCh 114 pyrroloquinoline quinone biosynthesis protein PqqC YP_681489.1 1113702 R 375451 CDS YP_681490.1 110678483 4197558 complement(1114453..1115346) 1 NC_008209.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 1115346 pqqB 4197558 pqqB Roseobacter denitrificans OCh 114 pyrroloquinoline quinone biosynthesis protein PqqB YP_681490.1 1114453 R 375451 CDS YP_681491.1 110678484 4197521 complement(1115371..1115478) 1 NC_008209.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA 1115478 pqqA 4197521 pqqA Roseobacter denitrificans OCh 114 coenzyme PQQ synthesis protein PqqA YP_681491.1 1115371 R 375451 CDS YP_681492.1 110678485 4197522 complement(1115576..1116262) 1 NC_008209.1 transcriptional regulatory protein PrrA 1116262 prrA 4197522 prrA Roseobacter denitrificans OCh 114 transcriptional regulatory protein PrrA YP_681492.1 1115576 R 375451 CDS YP_681493.1 110678486 4197523 complement(1116267..1117958) 1 NC_008209.1 sensor protein resE 1117958 resE 4197523 resE Roseobacter denitrificans OCh 114 sensor protein resE YP_681493.1 1116267 R 375451 CDS YP_681494.1 110678487 4197524 1118006..1118209 1 NC_008209.1 hypothetical protein 1118209 4197524 RD1_1157 Roseobacter denitrificans OCh 114 hypothetical protein YP_681494.1 1118006 D 375451 CDS YP_681495.1 110678488 4197525 complement(1118220..1119011) 1 NC_008209.1 ABC transporter permease 1119011 4197525 RD1_1158 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681495.1 1118220 R 375451 CDS YP_681496.1 110678489 4197526 complement(1119008..1119727) 1 NC_008209.1 ABC transporter ATP-binding protein 1119727 4197526 RD1_1159 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681496.1 1119008 R 375451 CDS YP_681497.1 110678490 4197527 complement(1120047..1121024) 1 NC_008209.1 malyl-CoA lyase 1121024 mclA 4197527 mclA Roseobacter denitrificans OCh 114 malyl-CoA lyase YP_681497.1 1120047 R 375451 CDS YP_681498.1 110678491 4197528 1121486..1122724 1 NC_008209.1 aminotransferase 1122724 4197528 RD1_1161 Roseobacter denitrificans OCh 114 aminotransferase YP_681498.1 1121486 D 375451 CDS YP_681499.1 110678492 4197529 1122758..1123957 1 NC_008209.1 catalyzes the formation of malyl-CoA from malate and CoA; malate--CoA ligase subunit beta 1123957 sucC 4197529 sucC Roseobacter denitrificans OCh 114 malate--CoA ligase subunit beta YP_681499.1 1122758 D 375451 CDS YP_681500.1 110678493 4197530 1123954..1124841 1 NC_008209.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1124841 mtkB 4197530 mtkB Roseobacter denitrificans OCh 114 succinyl-CoA synthetase subunit alpha YP_681500.1 1123954 D 375451 CDS YP_681501.1 110678494 4197531 1124841..1125812 1 NC_008209.1 glyoxylate reductase 1125812 gyaR 4197531 gyaR Roseobacter denitrificans OCh 114 glyoxylate reductase YP_681501.1 1124841 D 375451 CDS YP_681502.1 110678495 4197532 1125851..1127140 1 NC_008209.1 serine hydroxymethyltransferase 1127140 glyA 4197532 glyA Roseobacter denitrificans OCh 114 serine hydroxymethyltransferase YP_681502.1 1125851 D 375451 CDS YP_681503.1 110678496 4197533 1127593..1128129 1 NC_008209.1 DnaJ domain-containing protein 1128129 4197533 RD1_1166 Roseobacter denitrificans OCh 114 DnaJ domain-containing protein YP_681503.1 1127593 D 375451 CDS YP_681504.1 110678497 4197534 1128427..1128690 1 NC_008209.1 hypothetical protein 1128690 4197534 RD1_1167 Roseobacter denitrificans OCh 114 hypothetical protein YP_681504.1 1128427 D 375451 CDS YP_681505.1 110678498 4197535 complement(1129920..1132295) 1 NC_008209.1 methyl-accepting chemotaxis protein 1132295 mcpA 4197535 mcpA Roseobacter denitrificans OCh 114 methyl-accepting chemotaxis protein YP_681505.1 1129920 R 375451 CDS YP_681506.1 110678499 4197536 complement(1132531..1133445) 1 NC_008209.1 LysR family transcriptional regulator 1133445 4197536 RD1_1169 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_681506.1 1132531 R 375451 CDS YP_681507.1 110678500 4197537 1133539..1133766 1 NC_008209.1 hypothetical protein 1133766 4197537 RD1_1170 Roseobacter denitrificans OCh 114 hypothetical protein YP_681507.1 1133539 D 375451 CDS YP_681508.1 110678501 4197538 complement(1134060..1135694) 1 NC_008209.1 type I secretion target repeat-containing protein 1135694 4197538 RD1_1171 Roseobacter denitrificans OCh 114 type I secretion target repeat-containing protein YP_681508.1 1134060 R 375451 CDS YP_681509.1 110678502 4197539 complement(1137610..1137876) 1 NC_008209.1 hypothetical protein 1137876 4197539 RD1_1172 Roseobacter denitrificans OCh 114 hypothetical protein YP_681509.1 1137610 R 375451 CDS YP_681510.1 110678503 4197540 complement(1137873..1138553) 1 NC_008209.1 hypothetical protein 1138553 4197540 RD1_1173 Roseobacter denitrificans OCh 114 hypothetical protein YP_681510.1 1137873 R 375451 CDS YP_681511.1 110678504 4197502 complement(1138634..1139695) 1 NC_008209.1 Rieske (2Fe-2S) domain-containing protein 1139695 4197502 RD1_1174 Roseobacter denitrificans OCh 114 Rieske (2Fe-2S) domain-containing protein YP_681511.1 1138634 R 375451 CDS YP_681512.1 110678505 4197503 complement(1139692..1140069) 1 NC_008209.1 hypothetical protein 1140069 4197503 RD1_1175 Roseobacter denitrificans OCh 114 hypothetical protein YP_681512.1 1139692 R 375451 CDS YP_681513.1 110678506 4197504 1140739..1142514 1 NC_008209.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1142514 aspS 4197504 aspS Roseobacter denitrificans OCh 114 aspartyl-tRNA synthetase YP_681513.1 1140739 D 375451 CDS YP_681514.1 110678507 4197505 1142552..1143274 1 NC_008209.1 acetyltransferase 1143274 4197505 RD1_1177 Roseobacter denitrificans OCh 114 acetyltransferase YP_681514.1 1142552 D 375451 CDS YP_681515.1 110678508 4197506 complement(1143287..1144006) 1 NC_008209.1 response regulator 1144006 4197506 RD1_1178 Roseobacter denitrificans OCh 114 response regulator YP_681515.1 1143287 R 375451 CDS YP_681516.1 110678509 4197507 1144232..1144636 1 NC_008209.1 hypothetical protein 1144636 4197507 RD1_1179 Roseobacter denitrificans OCh 114 hypothetical protein YP_681516.1 1144232 D 375451 CDS YP_681517.1 110678510 4197508 1144659..1144955 1 NC_008209.1 hypothetical protein 1144955 4197508 RD1_1180 Roseobacter denitrificans OCh 114 hypothetical protein YP_681517.1 1144659 D 375451 CDS YP_681518.1 110678511 4197509 complement(1144891..1145610) 1 NC_008209.1 hypothetical protein 1145610 4197509 RD1_1181 Roseobacter denitrificans OCh 114 hypothetical protein YP_681518.1 1144891 R 375451 CDS YP_681519.1 110678512 4197510 complement(1145607..1146185) 1 NC_008209.1 nitroreductase family protein 1146185 4197510 RD1_1182 Roseobacter denitrificans OCh 114 nitroreductase family protein YP_681519.1 1145607 R 375451 CDS YP_681520.1 110678513 4197511 complement(1146200..1147300) 1 NC_008209.1 histone deacetylase family protein 1147300 4197511 RD1_1183 Roseobacter denitrificans OCh 114 histone deacetylase family protein YP_681520.1 1146200 R 375451 CDS YP_681521.1 110678514 4197512 complement(1147425..1148438) 1 NC_008209.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1148438 trpS 4197512 trpS Roseobacter denitrificans OCh 114 tryptophanyl-tRNA synthetase YP_681521.1 1147425 R 375451 CDS YP_681522.1 110678515 4197513 1148486..1149205 1 NC_008209.1 rhomboid family protein 1149205 4197513 RD1_1186 Roseobacter denitrificans OCh 114 rhomboid family protein YP_681522.1 1148486 D 375451 CDS YP_681523.1 110678516 4197514 complement(1149180..1150745) 1 NC_008209.1 virulence factor MviN-like protein 1150745 mviN 4197514 mviN Roseobacter denitrificans OCh 114 virulence factor MviN-like protein YP_681523.1 1149180 R 375451 CDS YP_681524.1 110678517 4197515 complement(1150742..1153549) 1 NC_008209.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1153549 glnD 4197515 glnD Roseobacter denitrificans OCh 114 PII uridylyl-transferase YP_681524.1 1150742 R 375451 CDS YP_681525.1 110678518 4197516 complement(1153530..1154699) 1 NC_008209.1 hypothetical protein 1154699 4197516 RD1_1189 Roseobacter denitrificans OCh 114 hypothetical protein YP_681525.1 1153530 R 375451 CDS YP_681526.1 110678519 4197517 1154785..1155642 1 NC_008209.1 tetrapyrrole methylase domain-containing protein 1155642 4197517 RD1_1190 Roseobacter denitrificans OCh 114 tetrapyrrole methylase domain-containing protein YP_681526.1 1154785 D 375451 CDS YP_681527.1 110678520 4197518 1155639..1156028 1 NC_008209.1 hypothetical protein 1156028 4197518 RD1_1191 Roseobacter denitrificans OCh 114 hypothetical protein YP_681527.1 1155639 D 375451 CDS YP_681528.1 110678521 4197519 1156204..1157145 1 NC_008209.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1157145 gshB 4197519 gshB Roseobacter denitrificans OCh 114 glutathione synthetase YP_681528.1 1156204 D 375451 CDS YP_681529.1 110678522 4197520 complement(1157150..1158649) 1 NC_008209.1 Mg chelatase-like protein 1158649 4197520 RD1_1193 Roseobacter denitrificans OCh 114 Mg chelatase-like protein YP_681529.1 1157150 R 375451 CDS YP_681530.1 110678523 4197482 complement(1158729..1159412) 1 NC_008209.1 hypothetical protein 1159412 4197482 RD1_1194 Roseobacter denitrificans OCh 114 hypothetical protein YP_681530.1 1158729 R 375451 CDS YP_681531.1 110678524 4197483 complement(1159472..1160053) 1 NC_008209.1 phosphoglycerate mutase 1160053 4197483 RD1_1195 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_681531.1 1159472 R 375451 CDS YP_681532.1 110678525 4197484 complement(1160050..1160571) 1 NC_008209.1 bifunctional adenosylcobalamin biosynthesis protein cobP 1160571 cobP 4197484 cobP Roseobacter denitrificans OCh 114 bifunctional adenosylcobalamin biosynthesis protein cobP YP_681532.1 1160050 R 375451 CDS YP_681533.1 110678526 4197485 1160669..1161547 1 NC_008209.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production; RNA polymerase factor sigma-32 1161547 rpoH2 4197485 rpoH2 Roseobacter denitrificans OCh 114 RNA polymerase factor sigma-32 YP_681533.1 1160669 D 375451 CDS YP_681534.1 110678527 4197486 1161547..1162359 1 NC_008209.1 hypothetical protein 1162359 4197486 RD1_1198 Roseobacter denitrificans OCh 114 hypothetical protein YP_681534.1 1161547 D 375451 CDS YP_681535.1 110678528 4197487 1162429..1163622 1 NC_008209.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1163622 coaBC 4197487 coaBC Roseobacter denitrificans OCh 114 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_681535.1 1162429 D 375451 CDS YP_681536.1 110678529 4197488 1163631..1164089 1 NC_008209.1 deoxyuridine 5'-triphosphate nucleotidohydrolase 1164089 dut 4197488 dut Roseobacter denitrificans OCh 114 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_681536.1 1163631 D 375451 CDS YP_681537.1 110678530 4197489 1164089..1165150 1 NC_008209.1 molybdopterin biosynthesis protein MoeB 1165150 moeB 4197489 moeB Roseobacter denitrificans OCh 114 molybdopterin biosynthesis protein MoeB YP_681537.1 1164089 D 375451 CDS YP_681538.1 110678531 4197490 1165211..1167226 1 NC_008209.1 dipeptidyl carboxypeptidase 1167226 dcp 4197490 dcp Roseobacter denitrificans OCh 114 dipeptidyl carboxypeptidase YP_681538.1 1165211 D 375451 CDS YP_681539.1 110678532 4197491 complement(1167230..1168162) 1 NC_008209.1 2-hydroxyacid dehydrogenase 1168162 4197491 RD1_1204 Roseobacter denitrificans OCh 114 2-hydroxyacid dehydrogenase YP_681539.1 1167230 R 375451 CDS YP_681540.1 110678533 4197492 complement(1168183..1169322) 1 NC_008209.1 rod shape-determining protein 1169322 rodA 4197492 rodA Roseobacter denitrificans OCh 114 rod shape-determining protein YP_681540.1 1168183 R 375451 CDS YP_681541.1 110678534 4197493 complement(1169319..1171262) 1 NC_008209.1 penicillin-binding protein 2 1171262 pbpA 4197493 pbpA Roseobacter denitrificans OCh 114 penicillin-binding protein 2 YP_681541.1 1169319 R 375451 CDS YP_681542.1 110678535 4197494 complement(1171294..1171833) 1 NC_008209.1 MreD protein 1171833 mreD 4197494 mreD Roseobacter denitrificans OCh 114 MreD protein YP_681542.1 1171294 R 375451 CDS YP_681543.1 110678536 4197495 complement(1171830..1172714) 1 NC_008209.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1172714 mreC 4197495 mreC Roseobacter denitrificans OCh 114 rod shape-determining protein MreC YP_681543.1 1171830 R 375451 CDS YP_681544.1 110678537 4197496 complement(1172789..1173877) 1 NC_008209.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1173877 mreB 4197496 mreB Roseobacter denitrificans OCh 114 rod shape-determining protein MreB YP_681544.1 1172789 R 375451 CDS YP_681545.1 110678538 4197497 complement(1174009..1174845) 1 NC_008209.1 amino acid ABC transporter substrate-binding protein 1174845 4197497 RD1_1210 Roseobacter denitrificans OCh 114 amino acid ABC transporter substrate-binding protein YP_681545.1 1174009 R 375451 CDS YP_681546.1 110678539 4197498 complement(1174978..1176546) 1 NC_008209.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1176546 leuA 4197498 leuA Roseobacter denitrificans OCh 114 2-isopropylmalate synthase YP_681546.1 1174978 R 375451 CDS YP_681547.1 110678540 4197499 1176804..1177469 1 NC_008209.1 C factor, cell signaling protein 1177469 csgA 4197499 csgA Roseobacter denitrificans OCh 114 C factor, cell signaling protein YP_681547.1 1176804 D 375451 CDS YP_681548.1 110678541 4197500 1177466..1178992 1 NC_008209.1 hypothetical protein 1178992 4197500 RD1_1213 Roseobacter denitrificans OCh 114 hypothetical protein YP_681548.1 1177466 D 375451 CDS YP_681549.1 110678542 4197501 complement(1179003..1180391) 1 NC_008209.1 MORN repeat-containing protein 1180391 4197501 RD1_1214 Roseobacter denitrificans OCh 114 MORN repeat-containing protein YP_681549.1 1179003 R 375451 CDS YP_681550.1 110678543 4197463 1180567..1182225 1 NC_008209.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1182225 nadE 4197463 nadE Roseobacter denitrificans OCh 114 NAD synthetase YP_681550.1 1180567 D 375451 CDS YP_681551.1 110678544 4197464 1182331..1183140 1 NC_008209.1 hypothetical protein 1183140 4197464 RD1_1216 Roseobacter denitrificans OCh 114 hypothetical protein YP_681551.1 1182331 D 375451 CDS YP_681552.1 110678545 4197465 complement(1183160..1184089) 1 NC_008209.1 metallo-beta-lactamase family protein 1184089 4197465 RD1_1217 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_681552.1 1183160 R 375451 CDS YP_681553.1 110678546 4197466 complement(1184109..1184222) 1 NC_008209.1 hypothetical protein 1184222 4197466 RD1_1218 Roseobacter denitrificans OCh 114 hypothetical protein YP_681553.1 1184109 R 375451 CDS YP_681554.1 110678547 4197467 1184266..1185591 1 NC_008209.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1185591 gltX 4197467 gltX Roseobacter denitrificans OCh 114 glutamyl-tRNA synthetase YP_681554.1 1184266 D 375451 CDS YP_681555.1 110678548 4197468 1185667..1187016 1 NC_008209.1 MATE efflux pump protein 1187016 4197468 RD1_1220 Roseobacter denitrificans OCh 114 MATE efflux pump protein YP_681555.1 1185667 D 375451 CDS YP_681556.1 110678549 4197469 complement(1186963..1187553) 1 NC_008209.1 hypothetical protein 1187553 4197469 RD1_1221 Roseobacter denitrificans OCh 114 hypothetical protein YP_681556.1 1186963 R 375451 CDS YP_681557.1 110678550 4197470 1187893..1189017 1 NC_008209.1 glycine cleavage system protein T 1189017 gcvT 4197470 gcvT Roseobacter denitrificans OCh 114 glycine cleavage system protein T YP_681557.1 1187893 D 375451 CDS YP_681558.1 110678551 4197471 1189035..1189394 1 NC_008209.1 glycine cleavage system H protein 1189394 gcvH 4197471 gcvH Roseobacter denitrificans OCh 114 glycine cleavage system H protein YP_681558.1 1189035 D 375451 CDS YP_681559.1 110678552 4197472 1189446..1192295 1 NC_008209.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1192295 gcvP 4197472 gcvP Roseobacter denitrificans OCh 114 glycine dehydrogenase YP_681559.1 1189446 D 375451 CDS YP_681560.1 110678553 4197473 complement(1192342..1194858) 1 NC_008209.1 ABC transporter permease 1194858 4197473 RD1_1226 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681560.1 1192342 R 375451 CDS YP_681561.1 110678554 4197474 complement(1194855..1195544) 1 NC_008209.1 ABC transporter ATP-binding protein 1195544 4197474 RD1_1227 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681561.1 1194855 R 375451 CDS YP_681562.1 110678555 4197475 1195596..1196234 1 NC_008209.1 acyl-CoA thioesterase 1196234 4197475 RD1_1228 Roseobacter denitrificans OCh 114 acyl-CoA thioesterase YP_681562.1 1195596 D 375451 CDS YP_681563.1 110678556 4197476 complement(1196296..1196502) 1 NC_008209.1 cold shock protein CspA 1196502 cspA 4197476 cspA Roseobacter denitrificans OCh 114 cold shock protein CspA YP_681563.1 1196296 R 375451 CDS YP_681564.1 110678557 4197477 complement(1196882..1197370) 1 NC_008209.1 hypothetical protein 1197370 4197477 RD1_1230 Roseobacter denitrificans OCh 114 hypothetical protein YP_681564.1 1196882 R 375451 CDS YP_681565.1 110678558 4197478 1197756..1198019 1 NC_008209.1 hypothetical protein 1198019 4197478 RD1_1231 Roseobacter denitrificans OCh 114 hypothetical protein YP_681565.1 1197756 D 375451 CDS YP_681566.1 110678559 4197479 complement(1198093..1198299) 1 NC_008209.1 cold shock protein CspA 1198299 cspA 4197479 cspA Roseobacter denitrificans OCh 114 cold shock protein CspA YP_681566.1 1198093 R 375451 CDS YP_681567.1 110678560 4197480 complement(1198421..1198534) 1 NC_008209.1 hypothetical protein 1198534 4197480 RD1_1233 Roseobacter denitrificans OCh 114 hypothetical protein YP_681567.1 1198421 R 375451 CDS YP_681568.1 110678561 4197481 complement(1198762..1199289) 1 NC_008209.1 outer membrane lipoprotein 1199289 4197481 RD1_1234 Roseobacter denitrificans OCh 114 outer membrane lipoprotein YP_681568.1 1198762 R 375451 CDS YP_681569.1 110678562 4197443 1199466..1199855 1 NC_008209.1 hypothetical protein 1199855 4197443 RD1_1235 Roseobacter denitrificans OCh 114 hypothetical protein YP_681569.1 1199466 D 375451 CDS YP_681570.1 110678563 4197444 1199866..1200423 1 NC_008209.1 hypothetical protein 1200423 4197444 RD1_1236 Roseobacter denitrificans OCh 114 hypothetical protein YP_681570.1 1199866 D 375451 CDS YP_681571.1 110678564 4197445 complement(1201858..1203513) 1 NC_008209.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1203513 4197445 RD1_1237 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_681571.1 1201858 R 375451 CDS YP_681572.1 110678565 4197446 1203665..1203772 1 NC_008209.1 hypothetical protein 1203772 4197446 RD1_1238 Roseobacter denitrificans OCh 114 hypothetical protein YP_681572.1 1203665 D 375451 CDS YP_681573.1 110678566 4197447 1203769..1203939 1 NC_008209.1 hypothetical protein 1203939 4197447 RD1_1239 Roseobacter denitrificans OCh 114 hypothetical protein YP_681573.1 1203769 D 375451 CDS YP_681574.1 110678567 4197448 1204107..1205396 1 NC_008209.1 hypothetical protein 1205396 4197448 RD1_1240 Roseobacter denitrificans OCh 114 hypothetical protein YP_681574.1 1204107 D 375451 CDS YP_681575.1 110678568 4197449 1205398..1205886 1 NC_008209.1 MOSC domain-containing protein 1205886 4197449 RD1_1242 Roseobacter denitrificans OCh 114 MOSC domain-containing protein YP_681575.1 1205398 D 375451 CDS YP_681576.1 110678569 4197450 1205923..1206522 1 NC_008209.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 1206522 nadD 4197450 nadD Roseobacter denitrificans OCh 114 nicotinic acid mononucleotide adenylyltransferase YP_681576.1 1205923 D 375451 CDS YP_681577.1 110678570 4197451 1206605..1208104 1 NC_008209.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1208104 dacB 4197451 dacB Roseobacter denitrificans OCh 114 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_681577.1 1206605 D 375451 CDS YP_681578.1 110678571 4197452 complement(1208152..1208574) 1 NC_008209.1 hypothetical protein 1208574 4197452 RD1_1245 Roseobacter denitrificans OCh 114 hypothetical protein YP_681578.1 1208152 R 375451 CDS YP_681579.1 110678572 4197453 1208693..1210276 1 NC_008209.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 1210276 lysK 4197453 lysK Roseobacter denitrificans OCh 114 lysyl-tRNA synthetase YP_681579.1 1208693 D 375451 CDS YP_681580.1 110678573 4197454 1210337..1210738 1 NC_008209.1 hypothetical protein 1210738 4197454 RD1_1247 Roseobacter denitrificans OCh 114 hypothetical protein YP_681580.1 1210337 D 375451 CDS YP_681581.1 110678574 4197455 complement(1210745..1211452) 1 NC_008209.1 hypothetical protein 1211452 4197455 RD1_1248 Roseobacter denitrificans OCh 114 hypothetical protein YP_681581.1 1210745 R 375451 CDS YP_681582.1 110678575 4197456 1211593..1211823 1 NC_008209.1 hypothetical protein 1211823 4197456 RD1_1249 Roseobacter denitrificans OCh 114 hypothetical protein YP_681582.1 1211593 D 375451 CDS YP_681583.1 110678576 4197457 complement(1211993..1212418) 1 NC_008209.1 hypothetical protein 1212418 4197457 RD1_1250 Roseobacter denitrificans OCh 114 hypothetical protein YP_681583.1 1211993 R 375451 CDS YP_681584.1 110678577 4197458 complement(1212509..1213018) 1 NC_008209.1 hypothetical protein 1213018 4197458 RD1_1251 Roseobacter denitrificans OCh 114 hypothetical protein YP_681584.1 1212509 R 375451 CDS YP_681585.1 110678578 4197459 complement(1213116..1213604) 1 NC_008209.1 hypothetical protein 1213604 4197459 RD1_1252 Roseobacter denitrificans OCh 114 hypothetical protein YP_681585.1 1213116 R 375451 CDS YP_681586.1 110678579 4197460 complement(1213647..1214165) 1 NC_008209.1 hypothetical protein 1214165 4197460 RD1_1253 Roseobacter denitrificans OCh 114 hypothetical protein YP_681586.1 1213647 R 375451 CDS YP_681587.1 110678580 4197461 complement(1214822..1217020) 1 NC_008209.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1217020 uvrB 4197461 uvrB Roseobacter denitrificans OCh 114 excinuclease ABC subunit B YP_681587.1 1214822 R 375451 CDS YP_681588.1 110678581 4197462 1217303..1217614 1 NC_008209.1 NADH-ubiquinone oxidoreductase 18 kDa subunit 1217614 4197462 RD1_1255 Roseobacter denitrificans OCh 114 NADH-ubiquinone oxidoreductase 18 kDa subunit YP_681588.1 1217303 D 375451 CDS YP_681589.1 110678582 4197425 complement(1217619..1217720) 1 NC_008209.1 hypothetical protein 1217720 4197425 RD1_1256 Roseobacter denitrificans OCh 114 hypothetical protein YP_681589.1 1217619 R 375451 CDS YP_681590.1 110678583 4197427 complement(1218382..1220253) 1 NC_008209.1 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 1220253 cpdB 4197427 cpdB Roseobacter denitrificans OCh 114 2`,3`-cyclic-nucleotide 2`-phosphodiesterase YP_681590.1 1218382 R 375451 CDS YP_681591.1 110678584 4197428 1220393..1221361 1 NC_008209.1 hydrolase 1221361 4197428 RD1_1259 Roseobacter denitrificans OCh 114 hydrolase YP_681591.1 1220393 D 375451 CDS YP_681592.1 110678585 4197429 1221466..1221933 1 NC_008209.1 hypothetical protein 1221933 4197429 RD1_1260 Roseobacter denitrificans OCh 114 hypothetical protein YP_681592.1 1221466 D 375451 CDS YP_681593.1 110678586 4197430 complement(1221915..1222772) 1 NC_008209.1 prephenate dehydratase 1222772 pheA 4197430 pheA Roseobacter denitrificans OCh 114 prephenate dehydratase YP_681593.1 1221915 R 375451 CDS YP_681594.1 110678587 4197431 1222892..1223395 1 NC_008209.1 cytochrome c552 1223395 cycM 4197431 cycM Roseobacter denitrificans OCh 114 cytochrome c552 YP_681594.1 1222892 D 375451 CDS YP_681595.1 110678588 4197432 1223579..1225510 1 NC_008209.1 ABC transporter substrate-binding protein 1225510 4197432 RD1_1263 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_681595.1 1223579 D 375451 CDS YP_681596.1 110678589 4197433 1225515..1226606 1 NC_008209.1 peptide ABC transporter permease 1226606 4197433 RD1_1264 Roseobacter denitrificans OCh 114 peptide ABC transporter permease YP_681596.1 1225515 D 375451 CDS YP_681597.1 110678590 4197434 1226610..1227788 1 NC_008209.1 ABC transporter permease 1227788 4197434 RD1_1265 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681597.1 1226610 D 375451 CDS YP_681598.1 110678591 4197435 1227785..1229365 1 NC_008209.1 peptide ABC transporter ATP-binding protein 1229365 4197435 RD1_1266 Roseobacter denitrificans OCh 114 peptide ABC transporter ATP-binding protein YP_681598.1 1227785 D 375451 CDS YP_681599.1 110678592 4197436 complement(1229472..1230827) 1 NC_008209.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1230827 hemN 4197436 hemN Roseobacter denitrificans OCh 114 coproporphyrinogen III oxidase YP_681599.1 1229472 R 375451 CDS YP_681600.1 110678593 4197437 1230891..1231634 1 NC_008209.1 transcriptional activator protein FnrL 1231634 fnrL 4197437 fnrL Roseobacter denitrificans OCh 114 transcriptional activator protein FnrL YP_681600.1 1230891 D 375451 CDS YP_681601.1 110678594 4197438 complement(1231656..1232492) 1 NC_008209.1 universal stress family protein 1232492 4197438 RD1_1269 Roseobacter denitrificans OCh 114 universal stress family protein YP_681601.1 1231656 R 375451 CDS YP_681602.1 110678595 4197439 1232700..1234313 1 NC_008209.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1234313 ccoN 4197439 ccoN Roseobacter denitrificans OCh 114 cbb3-type cytochrome c oxidase subunit I YP_681602.1 1232700 D 375451 CDS YP_681603.1 110678596 4197440 1234328..1235053 1 NC_008209.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1235053 ccoO 4197440 ccoO Roseobacter denitrificans OCh 114 cbb3-type cytochrome c oxidase subunit II YP_681603.1 1234328 D 375451 CDS YP_681604.1 110678597 4197441 1235066..1235251 1 NC_008209.1 cytochrome c oxidase, cbb3-type subunit IV 1235251 ccoQ 4197441 ccoQ Roseobacter denitrificans OCh 114 cytochrome c oxidase, cbb3-type subunit IV YP_681604.1 1235066 D 375451 CDS YP_681605.1 110678598 4197442 1235248..1236114 1 NC_008209.1 cytochrome c oxidase, cbb3-type subunit III 1236114 ccoP 4197442 ccoP Roseobacter denitrificans OCh 114 cytochrome c oxidase, cbb3-type subunit III YP_681605.1 1235248 D 375451 CDS YP_681606.1 110678599 4197406 1236222..1237658 1 NC_008209.1 RdxB protein 1237658 rdxB 4197406 rdxB Roseobacter denitrificans OCh 114 RdxB protein YP_681606.1 1236222 D 375451 CDS YP_681607.1 110678600 4197407 1237655..1238119 1 NC_008209.1 RdxH protein 1238119 rdxH 4197407 rdxH Roseobacter denitrificans OCh 114 RdxH protein YP_681607.1 1237655 D 375451 CDS YP_681608.1 110678601 4197408 1238116..1240305 1 NC_008209.1 RdxI protein 1240305 rdxI 4197408 rdxI Roseobacter denitrificans OCh 114 RdxI protein YP_681608.1 1238116 D 375451 CDS YP_681609.1 110678602 4197409 1240302..1240463 1 NC_008209.1 RdxS protein 1240463 rdxS 4197409 rdxS Roseobacter denitrificans OCh 114 RdxS protein YP_681609.1 1240302 D 375451 CDS YP_681610.1 110678603 4197410 complement(1240664..1242121) 1 NC_008209.1 D-alanyl-D-alanine carboxypeptidase 1242121 dacA 4197410 dacA Roseobacter denitrificans OCh 114 D-alanyl-D-alanine carboxypeptidase YP_681610.1 1240664 R 375451 CDS YP_681611.1 110678604 4197411 1242515..1242856 1 NC_008209.1 ATP-dependent Clp protease 1242856 clpS 4197411 clpS Roseobacter denitrificans OCh 114 ATP-dependent Clp protease YP_681611.1 1242515 D 375451 CDS YP_681612.1 110678605 4197412 1242906..1243856 1 NC_008209.1 ribosomal RNA small subunit methyltransferase C 1243856 rsmC 4197412 rsmC Roseobacter denitrificans OCh 114 ribosomal RNA small subunit methyltransferase C YP_681612.1 1242906 D 375451 CDS YP_681613.1 110678606 4197413 1243881..1244681 1 NC_008209.1 oxidoreductase 1244681 4197413 RD1_1281 Roseobacter denitrificans OCh 114 oxidoreductase YP_681613.1 1243881 D 375451 CDS YP_681614.1 110678607 4197414 1244756..1245649 1 NC_008209.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1245649 hemF 4197414 hemF Roseobacter denitrificans OCh 114 coproporphyrinogen III oxidase YP_681614.1 1244756 D 375451 CDS YP_681615.1 110678608 4197415 complement(1245809..1246753) 1 NC_008209.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1246753 hemC 4197415 hemC Roseobacter denitrificans OCh 114 porphobilinogen deaminase YP_681615.1 1245809 R 375451 CDS YP_681616.1 110678609 4197416 1246857..1247891 1 NC_008209.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1247891 hemE 4197416 hemE Roseobacter denitrificans OCh 114 uroporphyrinogen decarboxylase YP_681616.1 1246857 D 375451 CDS YP_681617.1 110678610 4197418 1248177..1249214 1 NC_008209.1 C4-dicarboxylate ABC transporter substrate-binding protein 1249214 dctP 4197418 dctP Roseobacter denitrificans OCh 114 C4-dicarboxylate ABC transporter substrate-binding protein YP_681617.1 1248177 D 375451 CDS YP_681618.1 110678611 4197419 1249272..1249844 1 NC_008209.1 hypothetical protein 1249844 4197419 RD1_1287 Roseobacter denitrificans OCh 114 hypothetical protein YP_681618.1 1249272 D 375451 CDS YP_681619.1 110678612 4197420 1249852..1251207 1 NC_008209.1 TRAP dicarboxylate transporter permease component 1251207 dctM 4197420 dctM Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter permease component YP_681619.1 1249852 D 375451 CDS YP_681620.1 110678613 4197421 1251554..1252009 1 NC_008209.1 hypothetical protein 1252009 4197421 RD1_1289 Roseobacter denitrificans OCh 114 hypothetical protein YP_681620.1 1251554 D 375451 CDS YP_681621.1 110678614 4197422 complement(1252029..1252520) 1 NC_008209.1 hypothetical protein 1252520 4197422 RD1_1290 Roseobacter denitrificans OCh 114 hypothetical protein YP_681621.1 1252029 R 375451 CDS YP_681622.1 110678615 4197423 complement(1252598..1254259) 1 NC_008209.1 dipeptide ABC transporter 1254259 4197423 RD1_1291 Roseobacter denitrificans OCh 114 dipeptide ABC transporter YP_681622.1 1252598 R 375451 CDS YP_681623.1 110678616 4197424 complement(1254791..1256206) 1 NC_008209.1 hypothetical protein 1256206 4197424 RD1_1292 Roseobacter denitrificans OCh 114 hypothetical protein YP_681623.1 1254791 R 375451 CDS YP_681624.1 110678617 4197387 complement(1256203..1257300) 1 NC_008209.1 cytosine deaminase 1257300 4197387 RD1_1293 Roseobacter denitrificans OCh 114 cytosine deaminase YP_681624.1 1256203 R 375451 CDS YP_681625.1 110678618 4197388 1257612..1258001 1 NC_008209.1 L-PSP family endoribonuclease 1258001 4197388 RD1_1294 Roseobacter denitrificans OCh 114 L-PSP family endoribonuclease YP_681625.1 1257612 D 375451 CDS YP_681626.1 110678619 4197389 complement(1258180..1258413) 1 NC_008209.1 hypothetical protein 1258413 4197389 RD1_1295 Roseobacter denitrificans OCh 114 hypothetical protein YP_681626.1 1258180 R 375451 CDS YP_681627.1 110678620 4197390 complement(1258382..1258666) 1 NC_008209.1 hypothetical protein 1258666 4197390 RD1_1296 Roseobacter denitrificans OCh 114 hypothetical protein YP_681627.1 1258382 R 375451 CDS YP_681628.1 110678621 4197391 complement(1258840..1258956) 1 NC_008209.1 hypothetical protein 1258956 4197391 RD1_1297 Roseobacter denitrificans OCh 114 hypothetical protein YP_681628.1 1258840 R 375451 CDS YP_681629.1 110678622 4197392 1259145..1260029 1 NC_008209.1 transmembrane protein 1260029 4197392 RD1_1298 Roseobacter denitrificans OCh 114 transmembrane protein YP_681629.1 1259145 D 375451 CDS YP_681630.1 110678623 4197393 complement(1259986..1260795) 1 NC_008209.1 chromosome partitioning protein 1260795 4197393 RD1_1299 Roseobacter denitrificans OCh 114 chromosome partitioning protein YP_681630.1 1259986 R 375451 CDS YP_681631.1 110678624 4197394 complement(1261044..1261373) 1 NC_008209.1 hypothetical protein 1261373 4197394 RD1_1300 Roseobacter denitrificans OCh 114 hypothetical protein YP_681631.1 1261044 R 375451 CDS YP_681632.1 110678625 4197395 complement(1261441..1261632) 1 NC_008209.1 hypothetical protein 1261632 4197395 RD1_1301 Roseobacter denitrificans OCh 114 hypothetical protein YP_681632.1 1261441 R 375451 CDS YP_681633.1 110678626 4197396 1261631..1261948 1 NC_008209.1 hypothetical protein 1261948 4197396 RD1_1302 Roseobacter denitrificans OCh 114 hypothetical protein YP_681633.1 1261631 D 375451 CDS YP_681634.1 110678627 4197397 complement(1262010..1263047) 1 NC_008209.1 zinc metalloproteinase nas-13 1263047 nas 4197397 nas Roseobacter denitrificans OCh 114 zinc metalloproteinase nas-13 YP_681634.1 1262010 R 375451 CDS YP_681635.1 110678628 4197398 complement(1263294..1263515) 1 NC_008209.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1263515 rpmE 4197398 rpmE Roseobacter denitrificans OCh 114 50S ribosomal protein L31 YP_681635.1 1263294 R 375451 CDS YP_681636.1 110678629 4197399 complement(1263527..1263910) 1 NC_008209.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1263910 rplS 4197399 rplS Roseobacter denitrificans OCh 114 50S ribosomal protein L19 YP_681636.1 1263527 R 375451 CDS YP_681637.1 110678630 4197400 complement(1264181..1264600) 1 NC_008209.1 hypothetical protein 1264600 4197400 RD1_1306 Roseobacter denitrificans OCh 114 hypothetical protein YP_681637.1 1264181 R 375451 CDS YP_681638.1 110678631 4197401 complement(1264821..1265546) 1 NC_008209.1 tRNA (guanine-N1)-methyltransferase 1265546 trmD 4197401 trmD Roseobacter denitrificans OCh 114 tRNA (guanine-N1)-methyltransferase YP_681638.1 1264821 R 375451 CDS YP_681639.1 110678632 4197402 complement(1265614..1266120) 1 NC_008209.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1266120 rimM 4197402 rimM Roseobacter denitrificans OCh 114 16S rRNA-processing protein RimM YP_681639.1 1265614 R 375451 CDS YP_681640.1 110678633 4197403 complement(1266117..1266305) 1 NC_008209.1 hypothetical protein 1266305 4197403 RD1_1310 Roseobacter denitrificans OCh 114 hypothetical protein YP_681640.1 1266117 R 375451 CDS YP_681641.1 110678634 4197404 complement(1266354..1266722) 1 NC_008209.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1266722 rpsP 4197404 rpsP Roseobacter denitrificans OCh 114 30S ribosomal protein S16 YP_681641.1 1266354 R 375451 CDS YP_681642.1 110678635 4197405 complement(1266763..1267059) 1 NC_008209.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1267059 4197405 RD1_1312 Roseobacter denitrificans OCh 114 chorismate mutase YP_681642.1 1266763 R 375451 CDS YP_681643.1 110678636 4197367 complement(1267153..1267758) 1 NC_008209.1 acetyltransferase 1267758 4197367 RD1_1313 Roseobacter denitrificans OCh 114 acetyltransferase YP_681643.1 1267153 R 375451 CDS YP_681644.1 110678637 4197368 complement(1267755..1268267) 1 NC_008209.1 acetyltransferase 1268267 4197368 RD1_1314 Roseobacter denitrificans OCh 114 acetyltransferase YP_681644.1 1267755 R 375451 CDS YP_681645.1 110678638 4197369 complement(1268291..1269808) 1 NC_008209.1 signal recognition particle protein 1269808 4197369 RD1_1315 Roseobacter denitrificans OCh 114 signal recognition particle protein YP_681645.1 1268291 R 375451 CDS YP_681646.1 110678639 4197370 complement(1270022..1270603) 1 NC_008209.1 hypothetical protein 1270603 4197370 RD1_1316 Roseobacter denitrificans OCh 114 hypothetical protein YP_681646.1 1270022 R 375451 CDS YP_681647.1 110678640 4197371 1270780..1271658 1 NC_008209.1 LysR family transcriptional regulator 1271658 4197371 RD1_1317 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_681647.1 1270780 D 375451 CDS YP_681648.1 110678641 4197372 1271655..1272551 1 NC_008209.1 hypothetical protein 1272551 4197372 RD1_1318 Roseobacter denitrificans OCh 114 hypothetical protein YP_681648.1 1271655 D 375451 CDS YP_681649.1 110678642 4197373 complement(1272642..1273214) 1 NC_008209.1 ArsR family transcriptional regulator 1273214 4197373 RD1_1319 Roseobacter denitrificans OCh 114 ArsR family transcriptional regulator YP_681649.1 1272642 R 375451 CDS YP_681650.1 110678643 4197374 1273222..1273554 1 NC_008209.1 ATP synthase F0 subunit I 1273554 atpI 4197374 atpI Roseobacter denitrificans OCh 114 ATP synthase F0 subunit I YP_681650.1 1273222 D 375451 CDS YP_681651.1 110678644 4197375 1273556..1274302 1 NC_008209.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 1274302 atpB 4197375 atpB Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit A YP_681651.1 1273556 D 375451 CDS YP_681652.1 110678645 4197376 1274358..1274582 1 NC_008209.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 1274582 atpE 4197376 atpE Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit C YP_681652.1 1274358 D 375451 CDS YP_681653.1 110678646 4197377 1274665..1275195 1 NC_008209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B' is part of the membrane proton channel.; ATP synthase F0F1 subunit B' 1275195 atpX 4197377 atpX Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit B' YP_681653.1 1274665 D 375451 CDS YP_681654.1 110678647 4197378 1275201..1275767 1 NC_008209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 1275767 atpF 4197378 atpF Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit B YP_681654.1 1275201 D 375451 CDS YP_681655.1 110678648 4197379 complement(1275919..1276704) 1 NC_008209.1 pyruvate dehydrogenase complex repressor 1276704 pdhR 4197379 pdhR Roseobacter denitrificans OCh 114 pyruvate dehydrogenase complex repressor YP_681655.1 1275919 R 375451 CDS YP_681656.1 110678649 4197380 1276870..1280379 1 NC_008209.1 chromosome segregation protein 1280379 smc 4197380 smc Roseobacter denitrificans OCh 114 chromosome segregation protein YP_681656.1 1276870 D 375451 CDS YP_681657.1 110678650 4197381 1280412..1280795 1 NC_008209.1 hypothetical protein 1280795 4197381 RD1_1328 Roseobacter denitrificans OCh 114 hypothetical protein YP_681657.1 1280412 D 375451 CDS YP_681658.1 110678651 4197382 complement(1280904..1282076) 1 NC_008209.1 lytic murein transglycosylase 1282076 4197382 RD1_1329 Roseobacter denitrificans OCh 114 lytic murein transglycosylase YP_681658.1 1280904 R 375451 CDS YP_681659.1 110678652 4197383 complement(1282095..1283003) 1 NC_008209.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1283003 cobD 4197383 cobD Roseobacter denitrificans OCh 114 cobalamin biosynthesis protein YP_681659.1 1282095 R 375451 CDS YP_681660.1 110678653 4197384 complement(1283000..1283953) 1 NC_008209.1 threonine-phosphate decarboxylase 1283953 cobC 4197384 cobC Roseobacter denitrificans OCh 114 threonine-phosphate decarboxylase YP_681660.1 1283000 R 375451 CDS YP_681661.1 110678654 4197385 1284150..1284536 1 NC_008209.1 response regulator 1284536 osp 4197385 osp Roseobacter denitrificans OCh 114 response regulator YP_681661.1 1284150 D 375451 CDS YP_681662.1 110678655 4197386 complement(1284615..1285589) 1 NC_008209.1 hypothetical protein 1285589 4197386 RD1_1334 Roseobacter denitrificans OCh 114 hypothetical protein YP_681662.1 1284615 R 375451 CDS YP_681663.1 110678656 4197348 1285768..1286118 1 NC_008209.1 hypothetical protein 1286118 4197348 RD1_1335 Roseobacter denitrificans OCh 114 hypothetical protein YP_681663.1 1285768 D 375451 CDS YP_681664.1 110678657 4197349 complement(1286122..1287294) 1 NC_008209.1 aminotransferase 1287294 4197349 RD1_1336 Roseobacter denitrificans OCh 114 aminotransferase YP_681664.1 1286122 R 375451 CDS YP_681665.1 110678658 4197350 1287389..1287916 1 NC_008209.1 peptide deformylase 1287916 def 4197350 def Roseobacter denitrificans OCh 114 peptide deformylase YP_681665.1 1287389 D 375451 CDS YP_681666.1 110678659 4197351 1287913..1288410 1 NC_008209.1 peptide deformylase 1288410 def 4197351 def Roseobacter denitrificans OCh 114 peptide deformylase YP_681666.1 1287913 D 375451 CDS YP_681667.1 110678660 4197352 1288429..1289346 1 NC_008209.1 methionyl-tRNA formyltransferase 1289346 fmt 4197352 fmt Roseobacter denitrificans OCh 114 methionyl-tRNA formyltransferase YP_681667.1 1288429 D 375451 CDS YP_681668.1 110678661 4197353 1289346..1289582 1 NC_008209.1 hypothetical protein 1289582 4197353 RD1_1340 Roseobacter denitrificans OCh 114 hypothetical protein YP_681668.1 1289346 D 375451 CDS YP_681669.1 110678662 4197354 complement(1289583..1292747) 1 NC_008209.1 acriflavin resistance protein D 1292747 acrD 4197354 acrD Roseobacter denitrificans OCh 114 acriflavin resistance protein D YP_681669.1 1289583 R 375451 CDS YP_681670.1 110678663 4197355 complement(1292751..1293878) 1 NC_008209.1 RND family efflux transporter MFP subunit 1293878 4197355 RD1_1342 Roseobacter denitrificans OCh 114 RND family efflux transporter MFP subunit YP_681670.1 1292751 R 375451 CDS YP_681671.1 110678664 4197356 complement(1293980..1294672) 1 NC_008209.1 TetR family transcriptional regulator 1294672 4197356 RD1_1343 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_681671.1 1293980 R 375451 CDS YP_681672.1 110678665 4197357 complement(1294679..1296220) 1 NC_008209.1 trimethylamine methyltransferase 1296220 4197357 RD1_1344 Roseobacter denitrificans OCh 114 trimethylamine methyltransferase YP_681672.1 1294679 R 375451 CDS YP_681673.1 110678666 4197358 complement(1296217..1298619) 1 NC_008209.1 dimethylglycine dehydrogenase 1298619 4197358 RD1_1345 Roseobacter denitrificans OCh 114 dimethylglycine dehydrogenase YP_681673.1 1296217 R 375451 CDS YP_681674.1 110678667 4197359 1298794..1299297 1 NC_008209.1 aggregation factor core 1299297 4197359 RD1_1346 Roseobacter denitrificans OCh 114 aggregation factor core YP_681674.1 1298794 D 375451 CDS YP_681675.1 110678668 4197360 complement(1299336..1300454) 1 NC_008209.1 lipase 1300454 4197360 RD1_1347 Roseobacter denitrificans OCh 114 lipase YP_681675.1 1299336 R 375451 CDS YP_681676.1 110678669 4197361 complement(1300610..1301293) 1 NC_008209.1 fumarylacetoacetate hydrolase 1301293 4197361 RD1_1348 Roseobacter denitrificans OCh 114 fumarylacetoacetate hydrolase YP_681676.1 1300610 R 375451 CDS YP_681677.1 110678670 4197362 complement(1301343..1301981) 1 NC_008209.1 hypothetical protein 1301981 4197362 RD1_1349 Roseobacter denitrificans OCh 114 hypothetical protein YP_681677.1 1301343 R 375451 CDS YP_681678.1 110678671 4197363 complement(1302010..1302627) 1 NC_008209.1 hypothetical protein 1302627 4197363 RD1_1350 Roseobacter denitrificans OCh 114 hypothetical protein YP_681678.1 1302010 R 375451 CDS YP_681679.1 110678672 4197364 complement(1302630..1303082) 1 NC_008209.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1303082 rnhA 4197364 rnhA Roseobacter denitrificans OCh 114 ribonuclease H YP_681679.1 1302630 R 375451 CDS YP_681680.1 110678673 4197365 complement(1303075..1303668) 1 NC_008209.1 hypothetical protein 1303668 4197365 RD1_1352 Roseobacter denitrificans OCh 114 hypothetical protein YP_681680.1 1303075 R 375451 CDS YP_681681.1 110678674 4197366 complement(1303665..1304129) 1 NC_008209.1 hypothetical protein 1304129 4197366 RD1_1353 Roseobacter denitrificans OCh 114 hypothetical protein YP_681681.1 1303665 R 375451 CDS YP_681682.1 110678675 4197328 complement(1304164..1305009) 1 NC_008209.1 hypothetical protein 1305009 4197328 RD1_1354 Roseobacter denitrificans OCh 114 hypothetical protein YP_681682.1 1304164 R 375451 CDS YP_681683.1 110678676 4197329 complement(1304987..1305937) 1 NC_008209.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1305937 ispH 4197329 ispH Roseobacter denitrificans OCh 114 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_681683.1 1304987 R 375451 CDS YP_681684.1 110678677 4197330 complement(1306039..1306587) 1 NC_008209.1 hypothetical protein 1306587 4197330 RD1_1356 Roseobacter denitrificans OCh 114 hypothetical protein YP_681684.1 1306039 R 375451 CDS YP_681685.1 110678678 4197331 1306678..1307292 1 NC_008209.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1307292 folK 4197331 folK Roseobacter denitrificans OCh 114 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_681685.1 1306678 D 375451 CDS YP_681686.1 110678679 4197332 1307369..1307722 1 NC_008209.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1307722 rpoZ 4197332 rpoZ Roseobacter denitrificans OCh 114 DNA-directed RNA polymerase subunit omega YP_681686.1 1307369 D 375451 CDS YP_681687.1 110678680 4197333 1307760..1309916 1 NC_008209.1 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 1309916 spoT 4197333 spoT Roseobacter denitrificans OCh 114 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_681687.1 1307760 D 375451 CDS YP_681688.1 110678681 4197334 1310003..1310677 1 NC_008209.1 hypothetical protein 1310677 4197334 RD1_1360 Roseobacter denitrificans OCh 114 hypothetical protein YP_681688.1 1310003 D 375451 CDS YP_681689.1 110678682 4197335 1310708..1311457 1 NC_008209.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1311457 pdxJ 4197335 pdxJ Roseobacter denitrificans OCh 114 pyridoxine 5'-phosphate synthase YP_681689.1 1310708 D 375451 CDS YP_681690.1 110678683 4197336 1311454..1312080 1 NC_008209.1 threonine efflux protein 1312080 rhtC 4197336 rhtC Roseobacter denitrificans OCh 114 threonine efflux protein YP_681690.1 1311454 D 375451 CDS YP_681691.1 110678684 4197337 1312077..1312481 1 NC_008209.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1312481 acpS 4197337 acpS Roseobacter denitrificans OCh 114 4'-phosphopantetheinyl transferase YP_681691.1 1312077 D 375451 CDS YP_681692.1 110678685 4197338 1312523..1313515 1 NC_008209.1 signal peptidase I 1313515 lepB 4197338 lepB Roseobacter denitrificans OCh 114 signal peptidase I YP_681692.1 1312523 D 375451 CDS YP_681693.1 110678686 4197339 1313512..1314198 1 NC_008209.1 ribonuclease III 1314198 rnc 4197339 rnc Roseobacter denitrificans OCh 114 ribonuclease III YP_681693.1 1313512 D 375451 CDS YP_681694.1 110678687 4197340 1314195..1315103 1 NC_008209.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1315103 era 4197340 era Roseobacter denitrificans OCh 114 GTP-binding protein Era YP_681694.1 1314195 D 375451 CDS YP_681695.1 110678688 4197341 1315149..1315478 1 NC_008209.1 hypothetical protein 1315478 4197341 RD1_1368 Roseobacter denitrificans OCh 114 hypothetical protein YP_681695.1 1315149 D 375451 CDS YP_681696.1 110678689 4197342 1315478..1316203 1 NC_008209.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1316203 recO 4197342 recO Roseobacter denitrificans OCh 114 DNA repair protein RecO YP_681696.1 1315478 D 375451 CDS YP_681697.1 110678690 4197343 complement(1316187..1316582) 1 NC_008209.1 hypothetical protein 1316582 4197343 RD1_1370 Roseobacter denitrificans OCh 114 hypothetical protein YP_681697.1 1316187 R 375451 CDS YP_681698.1 110678691 4197344 complement(1316579..1317100) 1 NC_008209.1 transcriptional regulatory protein 1317100 4197344 RD1_1371 Roseobacter denitrificans OCh 114 transcriptional regulatory protein YP_681698.1 1316579 R 375451 CDS YP_681699.1 110678692 4197345 complement(1317271..1318956) 1 NC_008209.1 isobutyryl-CoA dehydrogenase 1318956 ibd2 4197345 ibd2 Roseobacter denitrificans OCh 114 isobutyryl-CoA dehydrogenase YP_681699.1 1317271 R 375451 CDS YP_681700.1 110678693 4197346 complement(1319209..1319568) 1 NC_008209.1 HTH-type transcriptional regulator 1319568 4197346 RD1_1373 Roseobacter denitrificans OCh 114 HTH-type transcriptional regulator YP_681700.1 1319209 R 375451 CDS YP_681701.1 110678694 4197347 1319700..1320623 1 NC_008209.1 transcriptional regulator 1320623 4197347 RD1_1374 Roseobacter denitrificans OCh 114 transcriptional regulator YP_681701.1 1319700 D 375451 CDS YP_681702.1 110678695 4197309 1320715..1321431 1 NC_008209.1 hypothetical protein 1321431 4197309 RD1_1375 Roseobacter denitrificans OCh 114 hypothetical protein YP_681702.1 1320715 D 375451 CDS YP_681703.1 110678696 4197310 complement(1321479..1323077) 1 NC_008209.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1323077 pckA 4197310 pckA Roseobacter denitrificans OCh 114 phosphoenolpyruvate carboxykinase YP_681703.1 1321479 R 375451 CDS YP_681704.1 110678697 4197311 1323431..1324132 1 NC_008209.1 DNA-binding response regulator ChvI 1324132 chvI 4197311 chvI Roseobacter denitrificans OCh 114 DNA-binding response regulator ChvI YP_681704.1 1323431 D 375451 CDS YP_681705.1 110678698 4197312 1324176..1325864 1 NC_008209.1 sensor histidine kinase ChvG 1325864 chvG 4197312 chvG Roseobacter denitrificans OCh 114 sensor histidine kinase ChvG YP_681705.1 1324176 D 375451 CDS YP_681706.1 110678699 4197313 1325898..1326314 1 NC_008209.1 HPr kinase/phosphorylase 1326314 hprK 4197313 hprK Roseobacter denitrificans OCh 114 HPr kinase/phosphorylase YP_681706.1 1325898 D 375451 CDS YP_681707.1 110678700 4197314 1326307..1327194 1 NC_008209.1 hypothetical protein 1327194 4197314 RD1_1380 Roseobacter denitrificans OCh 114 hypothetical protein YP_681707.1 1326307 D 375451 CDS YP_681708.1 110678701 4197315 1327198..1327590 1 NC_008209.1 PTS system transporter subunit IIA 1327590 4197315 RD1_1382 Roseobacter denitrificans OCh 114 PTS system transporter subunit IIA YP_681708.1 1327198 D 375451 CDS YP_681709.1 110678702 4197316 1327607..1327876 1 NC_008209.1 phosphocarrier protein Hpr 1327876 ptsH 4197316 ptsH Roseobacter denitrificans OCh 114 phosphocarrier protein Hpr YP_681709.1 1327607 D 375451 CDS YP_681710.1 110678703 4197317 1327917..1328795 1 NC_008209.1 hypothetical protein 1328795 4197317 RD1_1384 Roseobacter denitrificans OCh 114 hypothetical protein YP_681710.1 1327917 D 375451 CDS YP_681711.1 110678704 4197318 complement(1328799..1329674) 1 NC_008209.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 1329674 bhbD 4197318 bhbD Roseobacter denitrificans OCh 114 3-hydroxybutyryl-CoA dehydrogenase YP_681711.1 1328799 R 375451 CDS YP_681712.1 110678705 4197319 1329828..1330664 1 NC_008209.1 hypothetical protein 1330664 4197319 RD1_1386 Roseobacter denitrificans OCh 114 hypothetical protein YP_681712.1 1329828 D 375451 CDS YP_681713.1 110678706 4197320 complement(1330718..1331647) 1 NC_008209.1 electron transfer flavoprotein subunit alpha 1331647 etfA 4197320 etfA Roseobacter denitrificans OCh 114 electron transfer flavoprotein subunit alpha YP_681713.1 1330718 R 375451 CDS YP_681714.1 110678707 4197321 complement(1331647..1332405) 1 NC_008209.1 electron transfer flavoprotein subunit beta 1332405 etfB 4197321 etfB Roseobacter denitrificans OCh 114 electron transfer flavoprotein subunit beta YP_681714.1 1331647 R 375451 CDS YP_681715.1 110678708 4197322 complement(1332585..1333157) 1 NC_008209.1 cob(I)alamin adenosyltransferase 1333157 4197322 RD1_1389 Roseobacter denitrificans OCh 114 cob(I)alamin adenosyltransferase YP_681715.1 1332585 R 375451 CDS YP_681716.1 110678709 4197323 complement(1333164..1333418) 1 NC_008209.1 hypothetical protein 1333418 4197323 RD1_1390 Roseobacter denitrificans OCh 114 hypothetical protein YP_681716.1 1333164 R 375451 CDS YP_681717.1 110678710 4197324 complement(1333450..1334277) 1 NC_008209.1 oxidoreductase 1334277 4197324 RD1_1391 Roseobacter denitrificans OCh 114 oxidoreductase YP_681717.1 1333450 R 375451 CDS YP_681718.1 110678711 4197325 complement(1334334..1334990) 1 NC_008209.1 hypothetical protein 1334990 4197325 RD1_1392 Roseobacter denitrificans OCh 114 hypothetical protein YP_681718.1 1334334 R 375451 CDS YP_681719.1 110678712 4197326 1335179..1337476 1 NC_008209.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1337476 parC 4197326 parC Roseobacter denitrificans OCh 114 DNA topoisomerase IV subunit A YP_681719.1 1335179 D 375451 CDS YP_681720.1 110678713 4197327 complement(1337473..1338843) 1 NC_008209.1 cytochrome P450 1338843 cyp 4197327 cyp Roseobacter denitrificans OCh 114 cytochrome P450 YP_681720.1 1337473 R 375451 CDS YP_681721.1 110678714 4197289 1338967..1339596 1 NC_008209.1 hypothetical protein 1339596 4197289 RD1_1395 Roseobacter denitrificans OCh 114 hypothetical protein YP_681721.1 1338967 D 375451 CDS YP_681722.1 110678715 4197290 1339709..1340884 1 NC_008209.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1340884 tufA 4197290 tufA Roseobacter denitrificans OCh 114 elongation factor Tu YP_681722.1 1339709 D 375451 CDS YP_681723.1 110678716 4197291 complement(1341233..1341844) 1 NC_008209.1 protease 1341844 4197291 RD1_1397 Roseobacter denitrificans OCh 114 protease YP_681723.1 1341233 R 375451 CDS YP_681724.1 110678717 4197292 1342209..1342526 1 NC_008209.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1342526 rpsJ 4197292 rpsJ Roseobacter denitrificans OCh 114 30S ribosomal protein S10 YP_681724.1 1342209 D 375451 CDS YP_681725.1 110678718 4197293 1342547..1343407 1 NC_008209.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1343407 rplC 4197293 rplC Roseobacter denitrificans OCh 114 50S ribosomal protein L3 YP_681725.1 1342547 D 375451 CDS YP_681726.1 110678719 4197294 1343404..1344021 1 NC_008209.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1344021 rplD 4197294 rplD Roseobacter denitrificans OCh 114 50S ribosomal protein L4 YP_681726.1 1343404 D 375451 CDS YP_681727.1 110678720 4197295 1344018..1344314 1 NC_008209.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1344314 rplW 4197295 rplW Roseobacter denitrificans OCh 114 50S ribosomal protein L23 YP_681727.1 1344018 D 375451 CDS YP_681728.1 110678721 4197296 1344584..1344790 1 NC_008209.1 cold shock protein CspA-related protein 1344790 4197296 RD1_1402 Roseobacter denitrificans OCh 114 cold shock protein CspA-related protein YP_681728.1 1344584 D 375451 CDS YP_681729.1 110678722 4197297 1344977..1345894 1 NC_008209.1 hypothetical protein 1345894 4197297 RD1_1403 Roseobacter denitrificans OCh 114 hypothetical protein YP_681729.1 1344977 D 375451 CDS YP_681730.1 110678723 4197298 complement(1346193..1346594) 1 NC_008209.1 hypothetical protein 1346594 4197298 RD1_1404 Roseobacter denitrificans OCh 114 hypothetical protein YP_681730.1 1346193 R 375451 CDS YP_681731.1 110678724 4197299 1346890..1347732 1 NC_008209.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1347732 rplB 4197299 rplB Roseobacter denitrificans OCh 114 50S ribosomal protein L2 YP_681731.1 1346890 D 375451 CDS YP_681732.1 110678725 4197300 1347736..1348014 1 NC_008209.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1348014 rpsS 4197300 rpsS Roseobacter denitrificans OCh 114 30S ribosomal protein S19 YP_681732.1 1347736 D 375451 CDS YP_681733.1 110678726 4197301 1348011..1348391 1 NC_008209.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1348391 rplV 4197301 rplV Roseobacter denitrificans OCh 114 50S ribosomal protein L22 YP_681733.1 1348011 D 375451 CDS YP_681734.1 110678727 4197302 1348391..1349098 1 NC_008209.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1349098 rpsC 4197302 rpsC Roseobacter denitrificans OCh 114 30S ribosomal protein S3 YP_681734.1 1348391 D 375451 CDS YP_681735.1 110678728 4197303 1349112..1349525 1 NC_008209.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1349525 rplP 4197303 rplP Roseobacter denitrificans OCh 114 50S ribosomal protein L16 YP_681735.1 1349112 D 375451 CDS YP_681736.1 110678729 4197304 1349850..1350323 1 NC_008209.1 hypothetical protein 1350323 4197304 RD1_1410 Roseobacter denitrificans OCh 114 hypothetical protein YP_681736.1 1349850 D 375451 CDS YP_681737.1 110678730 4197305 complement(1349862..1350311) 1 NC_008209.1 hypothetical protein 1350311 4197305 RD1_1411 Roseobacter denitrificans OCh 114 hypothetical protein YP_681737.1 1349862 R 375451 CDS YP_681738.1 110678731 4197306 complement(1350463..1351080) 1 NC_008209.1 hypothetical protein 1351080 4197306 RD1_1412 Roseobacter denitrificans OCh 114 hypothetical protein YP_681738.1 1350463 R 375451 CDS YP_681739.1 110678732 4197307 1351377..1351943 1 NC_008209.1 hypothetical protein 1351943 4197307 RD1_1414 Roseobacter denitrificans OCh 114 hypothetical protein YP_681739.1 1351377 D 375451 CDS YP_681740.1 110678733 4197308 complement(1352425..1353477) 1 NC_008209.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1353477 arcB 4197308 arcB Roseobacter denitrificans OCh 114 ornithine cyclodeaminase YP_681740.1 1352425 R 375451 CDS YP_681741.1 110678734 4197270 complement(1353486..1354412) 1 NC_008209.1 arginase 1354412 arcA 4197270 arcA Roseobacter denitrificans OCh 114 arginase YP_681741.1 1353486 R 375451 CDS YP_681742.1 110678735 4197271 complement(1354603..1355241) 1 NC_008209.1 threonine efflux protein 1355241 4197271 RD1_1417 Roseobacter denitrificans OCh 114 threonine efflux protein YP_681742.1 1354603 R 375451 CDS YP_681743.1 110678736 4197272 1355537..1355743 1 NC_008209.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1355743 4197272 RD1_1418 Roseobacter denitrificans OCh 114 50S ribosomal protein L29 YP_681743.1 1355537 D 375451 CDS YP_681744.1 110678737 4197273 1355755..1355994 1 NC_008209.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1355994 rpsQ 4197273 rpsQ Roseobacter denitrificans OCh 114 30S ribosomal protein S17 YP_681744.1 1355755 D 375451 CDS YP_681745.1 110678738 4197274 1356064..1356432 1 NC_008209.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1356432 rplN 4197274 rplN Roseobacter denitrificans OCh 114 50S ribosomal protein L14 YP_681745.1 1356064 D 375451 CDS YP_681746.1 110678739 4197275 1356435..1356746 1 NC_008209.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1356746 rplX 4197275 rplX Roseobacter denitrificans OCh 114 50S ribosomal protein L24 YP_681746.1 1356435 D 375451 CDS YP_681747.1 110678740 4197276 1356739..1357302 1 NC_008209.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1357302 rplE 4197276 rplE Roseobacter denitrificans OCh 114 50S ribosomal protein L5 YP_681747.1 1356739 D 375451 CDS YP_681748.1 110678741 4197277 1357323..1357628 1 NC_008209.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1357628 rpsN 4197277 rpsN Roseobacter denitrificans OCh 114 30S ribosomal protein S14 YP_681748.1 1357323 D 375451 CDS YP_681749.1 110678742 4197278 1357641..1358033 1 NC_008209.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1358033 rpsH 4197278 rpsH Roseobacter denitrificans OCh 114 30S ribosomal protein S8 YP_681749.1 1357641 D 375451 CDS YP_681750.1 110678743 4197279 1358044..1358577 1 NC_008209.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1358577 rplF 4197279 rplF Roseobacter denitrificans OCh 114 50S ribosomal protein L6 YP_681750.1 1358044 D 375451 CDS YP_681751.1 110678744 4197280 1358589..1358948 1 NC_008209.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1358948 rplR 4197280 rplR Roseobacter denitrificans OCh 114 50S ribosomal protein L18 YP_681751.1 1358589 D 375451 CDS YP_681752.1 110678745 4197281 1359055..1359630 1 NC_008209.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1359630 rpsE 4197281 rpsE Roseobacter denitrificans OCh 114 30S ribosomal protein S5 YP_681752.1 1359055 D 375451 CDS YP_681753.1 110678746 4197282 1359643..1359831 1 NC_008209.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1359831 rpmD 4197282 rpmD Roseobacter denitrificans OCh 114 50S ribosomal protein L30 YP_681753.1 1359643 D 375451 CDS YP_681754.1 110678747 4197283 1359968..1360243 1 NC_008209.1 hypothetical protein 1360243 4197283 RD1_1430 Roseobacter denitrificans OCh 114 hypothetical protein YP_681754.1 1359968 D 375451 CDS YP_681755.1 110678748 4197284 1361396..1361878 1 NC_008209.1 late assembly protein; 50S ribosomal protein L15 1361878 rplO 4197284 rplO Roseobacter denitrificans OCh 114 50S ribosomal protein L15 YP_681755.1 1361396 D 375451 CDS YP_681756.1 110678749 4197285 1361998..1363362 1 NC_008209.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1363362 secY 4197285 secY Roseobacter denitrificans OCh 114 preprotein translocase subunit SecY YP_681756.1 1361998 D 375451 CDS YP_681757.1 110678750 4197286 1363359..1364006 1 NC_008209.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1364006 adk 4197286 adk Roseobacter denitrificans OCh 114 adenylate kinase YP_681757.1 1363359 D 375451 CDS YP_681758.1 110678751 4197287 complement(1364033..1365229) 1 NC_008209.1 hypothetical protein 1365229 4197287 RD1_1434 Roseobacter denitrificans OCh 114 hypothetical protein YP_681758.1 1364033 R 375451 CDS YP_681759.1 110678752 4197288 1365537..1365905 1 NC_008209.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1365905 rpsM 4197288 rpsM Roseobacter denitrificans OCh 114 30S ribosomal protein S13 YP_681759.1 1365537 D 375451 CDS YP_681760.1 110678753 4197250 1365921..1366310 1 NC_008209.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1366310 rpsK 4197250 rpsK Roseobacter denitrificans OCh 114 30S ribosomal protein S11 YP_681760.1 1365921 D 375451 CDS YP_681761.1 110678754 4197251 1366413..1367441 1 NC_008209.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1367441 rpoA 4197251 rpoA Roseobacter denitrificans OCh 114 DNA-directed RNA polymerase subunit alpha YP_681761.1 1366413 D 375451 CDS YP_681762.1 110678755 4197252 1367571..1367993 1 NC_008209.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1367993 rplQ 4197252 rplQ Roseobacter denitrificans OCh 114 50S ribosomal protein L17 YP_681762.1 1367571 D 375451 CDS YP_681763.1 110678756 4197253 1368216..1369541 1 NC_008209.1 recombination factor protein RarA 1369541 4197253 RD1_1439 Roseobacter denitrificans OCh 114 recombination factor protein RarA YP_681763.1 1368216 D 375451 CDS YP_681764.1 110678757 4197254 1369608..1369991 1 NC_008209.1 CrcB-like protein 1369991 crcB 4197254 crcB Roseobacter denitrificans OCh 114 CrcB-like protein YP_681764.1 1369608 D 375451 CDS YP_681765.1 110678758 4197255 1369988..1371028 1 NC_008209.1 ribosomal large subunit pseudouridine synthase C 1371028 rluC 4197255 rluC Roseobacter denitrificans OCh 114 ribosomal large subunit pseudouridine synthase C YP_681765.1 1369988 D 375451 CDS YP_681766.1 110678759 4197256 1371028..1371705 1 NC_008209.1 hydrolase 1371705 4197256 RD1_1442 Roseobacter denitrificans OCh 114 hydrolase YP_681766.1 1371028 D 375451 CDS YP_681767.1 110678760 4197257 1371709..1372419 1 NC_008209.1 ATP12 chaperone protein 1372419 4197257 RD1_1443 Roseobacter denitrificans OCh 114 ATP12 chaperone protein YP_681767.1 1371709 D 375451 CDS YP_681768.1 110678761 4197258 1372618..1373634 1 NC_008209.1 glutamate/glutamine/aspartate/asparagine-binding protein 1373634 bztA 4197258 bztA Roseobacter denitrificans OCh 114 glutamate/glutamine/aspartate/asparagine-binding protein YP_681768.1 1372618 D 375451 CDS YP_681769.1 110678762 4197259 1373768..1374982 1 NC_008209.1 glutamate/glutamine/aspartate/asparagine transport system permease 1374982 bztB 4197259 bztB Roseobacter denitrificans OCh 114 glutamate/glutamine/aspartate/asparagine transport system permease YP_681769.1 1373768 D 375451 CDS YP_681770.1 110678763 4197260 1374986..1376284 1 NC_008209.1 amino acid ABC transporter permease 1376284 4197260 RD1_1446 Roseobacter denitrificans OCh 114 amino acid ABC transporter permease YP_681770.1 1374986 D 375451 CDS YP_681771.1 110678764 4197261 complement(1376723..1376905) 1 NC_008209.1 hypothetical protein 1376905 4197261 RD1_1447 Roseobacter denitrificans OCh 114 hypothetical protein YP_681771.1 1376723 R 375451 CDS YP_681772.1 110678765 4197262 complement(1377122..1377619) 1 NC_008209.1 phosphoglycerate mutase 1377619 4197262 RD1_1448 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_681772.1 1377122 R 375451 CDS YP_681773.1 110678766 4197263 complement(1377623..1378273) 1 NC_008209.1 hypothetical protein 1378273 4197263 RD1_1449 Roseobacter denitrificans OCh 114 hypothetical protein YP_681773.1 1377623 R 375451 CDS YP_681774.1 110678767 4197264 complement(1378270..1379064) 1 NC_008209.1 sterol desaturase 1379064 4197264 RD1_1450 Roseobacter denitrificans OCh 114 sterol desaturase YP_681774.1 1378270 R 375451 CDS YP_681775.1 110678768 4197265 complement(1379155..1380018) 1 NC_008209.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1380018 argB 4197265 argB Roseobacter denitrificans OCh 114 acetylglutamate kinase YP_681775.1 1379155 R 375451 CDS YP_681776.1 110678769 4197266 complement(1380048..1380698) 1 NC_008209.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1380698 engB 4197266 engB Roseobacter denitrificans OCh 114 ribosome biogenesis GTP-binding protein YsxC YP_681776.1 1380048 R 375451 CDS YP_681777.1 110678770 4197267 complement(1380698..1381438) 1 NC_008209.1 MOSC domain-containing protein 1381438 4197267 RD1_1454 Roseobacter denitrificans OCh 114 MOSC domain-containing protein YP_681777.1 1380698 R 375451 CDS YP_681778.1 110678771 4197268 complement(1381435..1383255) 1 NC_008209.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1383255 oxaA 4197268 oxaA Roseobacter denitrificans OCh 114 inner membrane protein translocase component YidC YP_681778.1 1381435 R 375451 CDS YP_681779.1 110678772 4197269 complement(1383427..1384974) 1 NC_008209.1 EAL domain-containing protein 1384974 4197269 RD1_1456 Roseobacter denitrificans OCh 114 EAL domain-containing protein YP_681779.1 1383427 R 375451 CDS YP_681780.1 110678773 4197232 complement(1385094..1386023) 1 NC_008209.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1386023 4197232 RD1_1457 Roseobacter denitrificans OCh 114 C32 tRNA thiolase YP_681780.1 1385094 R 375451 CDS YP_681781.1 110678774 4197233 complement(1386035..1386271) 1 NC_008209.1 hypothetical protein 1386271 4197233 RD1_1458 Roseobacter denitrificans OCh 114 hypothetical protein YP_681781.1 1386035 R 375451 CDS YP_681782.1 110678775 4197234 complement(1386268..1386681) 1 NC_008209.1 ribonuclease P protein component 1386681 rnpA 4197234 rnpA Roseobacter denitrificans OCh 114 ribonuclease P protein component YP_681782.1 1386268 R 375451 CDS YP_681783.1 110678776 4197235 complement(1386706..1386840) 1 NC_008209.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1386840 rpmH 4197235 rpmH Roseobacter denitrificans OCh 114 50S ribosomal protein L34 YP_681783.1 1386706 R 375451 CDS YP_681784.1 110678777 4197236 1387141..1387872 1 NC_008209.1 mercuric reductase 1387872 merA 4197236 merA Roseobacter denitrificans OCh 114 mercuric reductase YP_681784.1 1387141 D 375451 CDS YP_681785.1 110678778 4197237 1387814..1389292 1 NC_008209.1 mercuric reductase 1389292 merA 4197237 merA Roseobacter denitrificans OCh 114 mercuric reductase YP_681785.1 1387814 D 375451 CDS YP_681786.1 110678779 4197238 1389304..1390710 1 NC_008209.1 sensor histidine kinase 1390710 regM 4197238 regM Roseobacter denitrificans OCh 114 sensor histidine kinase YP_681786.1 1389304 D 375451 CDS YP_681787.1 110678780 4197240 1391051..1391494 1 NC_008209.1 hypothetical protein 1391494 4197240 RD1_1467 Roseobacter denitrificans OCh 114 hypothetical protein YP_681787.1 1391051 D 375451 CDS YP_681788.1 110678781 4197241 1393010..1393297 1 NC_008209.1 hypothetical protein 1393297 4197241 RD1_1468 Roseobacter denitrificans OCh 114 hypothetical protein YP_681788.1 1393010 D 375451 CDS YP_681789.1 110678782 4197242 complement(1394709..1394822) 1 NC_008209.1 hypothetical protein 1394822 4197242 RD1_1469 Roseobacter denitrificans OCh 114 hypothetical protein YP_681789.1 1394709 R 375451 CDS YP_681790.1 110678783 4197243 1394986..1395165 1 NC_008209.1 hypothetical protein 1395165 4197243 RD1_1470 Roseobacter denitrificans OCh 114 hypothetical protein YP_681790.1 1394986 D 375451 CDS YP_681791.1 110678784 4197244 1395405..1396580 1 NC_008209.1 SCP-like extracellular protein 1396580 4197244 RD1_1471 Roseobacter denitrificans OCh 114 SCP-like extracellular protein YP_681791.1 1395405 D 375451 CDS YP_681792.1 110678785 4197245 1396815..1397939 1 NC_008209.1 glycine amidinotransferase 1397939 gatM 4197245 gatM Roseobacter denitrificans OCh 114 glycine amidinotransferase YP_681792.1 1396815 D 375451 CDS YP_681793.1 110678786 4197246 complement(1398117..1399634) 1 NC_008209.1 catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 1399634 4197246 RD1_1474 Roseobacter denitrificans OCh 114 malonyl-CoA synthase YP_681793.1 1398117 R 375451 CDS YP_681794.1 110678787 4197247 complement(1399637..1400881) 1 NC_008209.1 malonyl-CoA decarboxylase 1400881 mcd 4197247 mcd Roseobacter denitrificans OCh 114 malonyl-CoA decarboxylase YP_681794.1 1399637 R 375451 CDS YP_681795.1 110678788 4197248 complement(1400878..1402194) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 1402194 4197248 RD1_1476 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_681795.1 1400878 R 375451 CDS YP_681796.1 110678789 4197249 complement(1402194..1402796) 1 NC_008209.1 hypothetical protein 1402796 4197249 RD1_1477 Roseobacter denitrificans OCh 114 hypothetical protein YP_681796.1 1402194 R 375451 CDS YP_681797.1 110678790 4197212 complement(1402819..1403808) 1 NC_008209.1 C4-dicarboxylate transport system C4-dicarboxylate-binding protein 1403808 4197212 RD1_1478 Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system C4-dicarboxylate-binding protein YP_681797.1 1402819 R 375451 CDS YP_681798.1 110678791 4197213 1403947..1404594 1 NC_008209.1 GntR family transcriptional regulator 1404594 4197213 RD1_1479 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_681798.1 1403947 D 375451 CDS YP_681799.1 110678792 4197214 complement(1404822..1405070) 1 NC_008209.1 hypothetical protein 1405070 4197214 RD1_1480 Roseobacter denitrificans OCh 114 hypothetical protein YP_681799.1 1404822 R 375451 CDS YP_681800.1 110678793 4197215 complement(1405379..1406860) 1 NC_008209.1 mannitol 2-dehydrogenase 1406860 mtlK 4197215 mtlK Roseobacter denitrificans OCh 114 mannitol 2-dehydrogenase YP_681800.1 1405379 R 375451 CDS YP_681801.1 110678794 4197216 complement(1406848..1407009) 1 NC_008209.1 hypothetical protein 1407009 4197216 RD1_1482 Roseobacter denitrificans OCh 114 hypothetical protein YP_681801.1 1406848 R 375451 CDS YP_681802.1 110678795 4197217 complement(1407043..1408047) 1 NC_008209.1 sugar transport ATP-binding transport protein 1408047 4197217 RD1_1483 Roseobacter denitrificans OCh 114 sugar transport ATP-binding transport protein YP_681802.1 1407043 R 375451 CDS YP_681803.1 110678796 4197218 complement(1408060..1408890) 1 NC_008209.1 sugar ABC transporter permease 1408890 4197218 RD1_1484 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_681803.1 1408060 R 375451 CDS YP_681804.1 110678797 4197219 complement(1408901..1409767) 1 NC_008209.1 sugar ABC transporter permease 1409767 4197219 RD1_1485 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_681804.1 1408901 R 375451 CDS YP_681805.1 110678798 4197220 complement(1409887..1411194) 1 NC_008209.1 sorbitol ABC transporter substrate-binding protein 1411194 4197220 RD1_1486 Roseobacter denitrificans OCh 114 sorbitol ABC transporter substrate-binding protein YP_681805.1 1409887 R 375451 CDS YP_681806.1 110678799 4197221 complement(1411309..1412340) 1 NC_008209.1 LacI family transcriptional regulator 1412340 4197221 RD1_1487 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_681806.1 1411309 R 375451 CDS YP_681807.1 110678800 4197222 complement(1412798..1413538) 1 NC_008209.1 histidine kinase 1413538 4197222 RD1_1488 Roseobacter denitrificans OCh 114 histidine kinase YP_681807.1 1412798 R 375451 CDS YP_681808.1 110678801 4197223 complement(1413615..1415087) 1 NC_008209.1 trehalose/maltose binding 1415087 4197223 RD1_1489 Roseobacter denitrificans OCh 114 trehalose/maltose binding YP_681808.1 1413615 R 375451 CDS YP_681809.1 110678802 4197224 1415207..1417150 1 NC_008209.1 hypothetical protein 1417150 4197224 RD1_1490 Roseobacter denitrificans OCh 114 hypothetical protein YP_681809.1 1415207 D 375451 CDS YP_681810.1 110678803 4197225 1417172..1417633 1 NC_008209.1 response regulator 1417633 4197225 RD1_1491 Roseobacter denitrificans OCh 114 response regulator YP_681810.1 1417172 D 375451 CDS YP_681811.1 110678804 4197226 1417733..1417831 1 NC_008209.1 hypothetical protein 1417831 4197226 RD1_1492 Roseobacter denitrificans OCh 114 hypothetical protein YP_681811.1 1417733 D 375451 CDS YP_681812.1 110678805 4197227 1417874..1419202 1 NC_008209.1 UDP-glucose/GDP-mannose dehydrogenase 1419202 4197227 RD1_1493 Roseobacter denitrificans OCh 114 UDP-glucose/GDP-mannose dehydrogenase YP_681812.1 1417874 D 375451 CDS YP_681813.1 110678806 4197228 complement(1419258..1420196) 1 NC_008209.1 formamidase 1420196 fmdA 4197228 fmdA Roseobacter denitrificans OCh 114 formamidase YP_681813.1 1419258 R 375451 CDS YP_681814.1 110678807 4197229 complement(1420300..1421949) 1 NC_008209.1 tryptophan monooxygenase 1421949 4197229 RD1_1495 Roseobacter denitrificans OCh 114 tryptophan monooxygenase YP_681814.1 1420300 R 375451 CDS YP_681815.1 110678808 4197230 complement(1421946..1422731) 1 NC_008209.1 hydrolase 1422731 4197230 RD1_1496 Roseobacter denitrificans OCh 114 hydrolase YP_681815.1 1421946 R 375451 CDS YP_681816.1 110678809 4197231 complement(1422741..1424048) 1 NC_008209.1 glutamine synthetase 1424048 4197231 RD1_1497 Roseobacter denitrificans OCh 114 glutamine synthetase YP_681816.1 1422741 R 375451 CDS YP_681817.1 110678810 4197193 complement(1424045..1424902) 1 NC_008209.1 RpiR family transcriptional regulator 1424902 4197193 RD1_1498 Roseobacter denitrificans OCh 114 RpiR family transcriptional regulator YP_681817.1 1424045 R 375451 CDS YP_681818.1 110678811 4197194 1425015..1425824 1 NC_008209.1 hypothetical protein 1425824 4197194 RD1_1499 Roseobacter denitrificans OCh 114 hypothetical protein YP_681818.1 1425015 D 375451 CDS YP_681819.1 110678812 4197195 1425821..1426462 1 NC_008209.1 hypothetical protein 1426462 4197195 RD1_1500 Roseobacter denitrificans OCh 114 hypothetical protein YP_681819.1 1425821 D 375451 CDS YP_681820.1 110678813 4197196 1426506..1427216 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 1427216 4197196 RD1_1501 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681820.1 1426506 D 375451 CDS YP_681821.1 110678814 4197197 1427247..1428398 1 NC_008209.1 branched-chain amino acid ABC transporter substrate-binding protein 1428398 4197197 RD1_1502 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter substrate-binding protein YP_681821.1 1427247 D 375451 CDS YP_681822.1 110678815 4197198 1428443..1429147 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 1429147 4197198 RD1_1503 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_681822.1 1428443 D 375451 CDS YP_681823.1 110678816 4197199 1429149..1430045 1 NC_008209.1 branched-chain amino acid ABC transporter permease 1430045 4197199 RD1_1504 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681823.1 1429149 D 375451 CDS YP_681824.1 110678817 4197200 1430042..1431067 1 NC_008209.1 branched-chain amino acid ABC transporter permease 1431067 4197200 RD1_1505 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_681824.1 1430042 D 375451 CDS YP_681825.1 110678818 4197201 complement(1431256..1432311) 1 NC_008209.1 hypothetical protein 1432311 4197201 RD1_1506 Roseobacter denitrificans OCh 114 hypothetical protein YP_681825.1 1431256 R 375451 CDS YP_681826.1 110678819 4197202 complement(1432345..1432761) 1 NC_008209.1 ArsR family transcriptional regulator 1432761 4197202 RD1_1507 Roseobacter denitrificans OCh 114 ArsR family transcriptional regulator YP_681826.1 1432345 R 375451 CDS YP_681827.1 110678820 4197203 complement(1432789..1433157) 1 NC_008209.1 SoxS protein 1433157 soxS 4197203 soxS Roseobacter denitrificans OCh 114 SoxS protein YP_681827.1 1432789 R 375451 CDS YP_681828.1 110678821 4197204 1433231..1433968 1 NC_008209.1 cytochrome c biogenesis protein 1433968 ccdA 4197204 ccdA Roseobacter denitrificans OCh 114 cytochrome c biogenesis protein YP_681828.1 1433231 D 375451 CDS YP_681829.1 110678822 4197205 1433984..1434547 1 NC_008209.1 thioredoxin SoxW 1434547 soxW 4197205 soxW Roseobacter denitrificans OCh 114 thioredoxin SoxW YP_681829.1 1433984 D 375451 CDS YP_681830.1 110678823 4197206 1434667..1435140 1 NC_008209.1 monoheme cytochrome c SoxX 1435140 soxX 4197206 soxX Roseobacter denitrificans OCh 114 monoheme cytochrome c SoxX YP_681830.1 1434667 D 375451 CDS YP_681831.1 110678824 4197207 1435189..1435605 1 NC_008209.1 with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY 1435605 soxY 4197207 soxY Roseobacter denitrificans OCh 114 sulfur oxidation protein SoxY YP_681831.1 1435189 D 375451 CDS YP_681832.1 110678825 4197208 1435626..1435958 1 NC_008209.1 sulfur oxidation Z protein 1435958 soxZ 4197208 soxZ Roseobacter denitrificans OCh 114 sulfur oxidation Z protein YP_681832.1 1435626 D 375451 CDS YP_681833.1 110678826 4197209 1435984..1436829 1 NC_008209.1 diheme cytochrome c SoxA 1436829 soxA 4197209 soxA Roseobacter denitrificans OCh 114 diheme cytochrome c SoxA YP_681833.1 1435984 D 375451 CDS YP_681834.1 110678827 4197210 1436927..1438630 1 NC_008209.1 sulfur oxidation B protein 1438630 soxB 4197210 soxB Roseobacter denitrificans OCh 114 sulfur oxidation B protein YP_681834.1 1436927 D 375451 CDS YP_681835.1 110678828 4197211 1438660..1439946 1 NC_008209.1 sulfite dehydrogenase SoxC protein 1439946 soxC 4197211 soxC Roseobacter denitrificans OCh 114 sulfite dehydrogenase SoxC protein YP_681835.1 1438660 D 375451 CDS YP_681836.1 110678829 4197173 1439930..1440967 1 NC_008209.1 diheme cytochrome c SoxD 1440967 soxD 4197173 soxD Roseobacter denitrificans OCh 114 diheme cytochrome c SoxD YP_681836.1 1439930 D 375451 CDS YP_681837.1 110678830 4197174 1440972..1441676 1 NC_008209.1 cytochrome c2 1441676 soxE 4197174 soxE Roseobacter denitrificans OCh 114 cytochrome c2 YP_681837.1 1440972 D 375451 CDS YP_681838.1 110678831 4197175 1441705..1442973 1 NC_008209.1 sulfide dehydrogenase flavoprotein subunit 1442973 soxF 4197175 soxF Roseobacter denitrificans OCh 114 sulfide dehydrogenase flavoprotein subunit YP_681838.1 1441705 D 375451 CDS YP_681839.1 110678832 4197176 1443054..1443494 1 NC_008209.1 hypothetical protein 1443494 4197176 RD1_1520 Roseobacter denitrificans OCh 114 hypothetical protein YP_681839.1 1443054 D 375451 CDS YP_681840.1 110678833 4197177 1443604..1444671 1 NC_008209.1 hypothetical protein 1444671 4197177 RD1_1521 Roseobacter denitrificans OCh 114 hypothetical protein YP_681840.1 1443604 D 375451 CDS YP_681841.1 110678834 4197178 complement(1444780..1445724) 1 NC_008209.1 metallo-beta-lactamase family protein 1445724 4197178 RD1_1522 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_681841.1 1444780 R 375451 CDS YP_681842.1 110678835 4197179 complement(1445727..1446644) 1 NC_008209.1 metallo-beta-lactamase family protein 1446644 4197179 RD1_1523 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_681842.1 1445727 R 375451 CDS YP_681843.1 110678836 4197180 complement(1446704..1446868) 1 NC_008209.1 hypothetical protein 1446868 4197180 RD1_1524 Roseobacter denitrificans OCh 114 hypothetical protein YP_681843.1 1446704 R 375451 CDS YP_681844.1 110678837 4197181 1446993..1447982 1 NC_008209.1 hypothetical protein 1447982 4197181 RD1_1525 Roseobacter denitrificans OCh 114 hypothetical protein YP_681844.1 1446993 D 375451 CDS YP_681845.1 110678838 4197182 1448025..1449989 1 NC_008209.1 hypothetical protein 1449989 4197182 RD1_1526 Roseobacter denitrificans OCh 114 hypothetical protein YP_681845.1 1448025 D 375451 CDS YP_681846.1 110678839 4197183 1450054..1450869 1 NC_008209.1 nicotinate-nucleotide pyrophosphorylase 1450869 nadC 4197183 nadC Roseobacter denitrificans OCh 114 nicotinate-nucleotide pyrophosphorylase YP_681846.1 1450054 D 375451 CDS YP_681847.1 110678840 4197184 1450893..1452926 1 NC_008209.1 nucleoside phosphorylase 1452926 4197184 RD1_1528 Roseobacter denitrificans OCh 114 nucleoside phosphorylase YP_681847.1 1450893 D 375451 CDS YP_681848.1 110678841 4197185 complement(1453044..1454225) 1 NC_008209.1 amidohydrolase 1454225 4197185 RD1_1529 Roseobacter denitrificans OCh 114 amidohydrolase YP_681848.1 1453044 R 375451 CDS YP_681849.1 110678842 4197186 1454312..1454779 1 NC_008209.1 multiple antibiotic resistance protein MarR 1454779 marR 4197186 marR Roseobacter denitrificans OCh 114 multiple antibiotic resistance protein MarR YP_681849.1 1454312 D 375451 CDS YP_681850.1 110678843 4197187 1454922..1455764 1 NC_008209.1 dehydrogenase 1455764 4197187 RD1_1532 Roseobacter denitrificans OCh 114 dehydrogenase YP_681850.1 1454922 D 375451 CDS YP_681851.1 110678844 4197188 1455765..1458506 1 NC_008209.1 aldehyde oxidoreductase 1458506 mop 4197188 mop Roseobacter denitrificans OCh 114 aldehyde oxidoreductase YP_681851.1 1455765 D 375451 CDS YP_681852.1 110678845 4197189 1458499..1459989 1 NC_008209.1 hypothetical protein 1459989 4197189 RD1_1534 Roseobacter denitrificans OCh 114 hypothetical protein YP_681852.1 1458499 D 375451 CDS YP_681853.1 110678846 4197190 1459994..1460878 1 NC_008209.1 hypothetical protein 1460878 4197190 RD1_1535 Roseobacter denitrificans OCh 114 hypothetical protein YP_681853.1 1459994 D 375451 CDS YP_681854.1 110678847 4197191 1460865..1461446 1 NC_008209.1 hypothetical protein 1461446 4197191 RD1_1536 Roseobacter denitrificans OCh 114 hypothetical protein YP_681854.1 1460865 D 375451 CDS YP_681855.1 110678848 4197192 1461443..1462027 1 NC_008209.1 hypothetical protein 1462027 4197192 RD1_1537 Roseobacter denitrificans OCh 114 hypothetical protein YP_681855.1 1461443 D 375451 CDS YP_681856.1 110678849 4197154 1462487..1463470 1 NC_008209.1 C4-dicarboxylate binding protein 1463470 4197154 RD1_1539 Roseobacter denitrificans OCh 114 C4-dicarboxylate binding protein YP_681856.1 1462487 D 375451 CDS YP_681857.1 110678850 4197155 1463544..1464122 1 NC_008209.1 ABC transporter permease 1464122 4197155 RD1_1541 Roseobacter denitrificans OCh 114 ABC transporter permease YP_681857.1 1463544 D 375451 CDS YP_681858.1 110678851 4197156 1464126..1465388 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 1465388 4197156 RD1_1542 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_681858.1 1464126 D 375451 CDS YP_681859.1 110678852 4197157 complement(1465460..1468876) 1 NC_008209.1 iron-regulated protein FrpC 1468876 frpC 4197157 frpC Roseobacter denitrificans OCh 114 iron-regulated protein FrpC YP_681859.1 1465460 R 375451 CDS YP_681860.1 110678853 4197158 1468996..1469088 1 NC_008209.1 hypothetical protein 1469088 4197158 RD1_1545 Roseobacter denitrificans OCh 114 hypothetical protein YP_681860.1 1468996 D 375451 CDS YP_681861.1 110678854 4197159 1469238..1471397 1 NC_008209.1 nitrous-oxide reductase regulatory protein NosR 1471397 nosR 4197159 nosR Roseobacter denitrificans OCh 114 nitrous-oxide reductase regulatory protein NosR YP_681861.1 1469238 D 375451 CDS YP_681862.1 110678855 4197160 1471416..1473329 1 NC_008209.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 1473329 nosZ 4197160 nosZ Roseobacter denitrificans OCh 114 nitrous-oxide reductase YP_681862.1 1471416 D 375451 CDS YP_681863.1 110678856 4197161 1473333..1474580 1 NC_008209.1 nitrous oxide maturation protein 1474580 nosD 4197161 nosD Roseobacter denitrificans OCh 114 nitrous oxide maturation protein YP_681863.1 1473333 D 375451 CDS YP_681864.1 110678857 4197162 1474570..1475472 1 NC_008209.1 copper transport ATP-binding protein NosF 1475472 nosF 4197162 nosF Roseobacter denitrificans OCh 114 copper transport ATP-binding protein NosF YP_681864.1 1474570 D 375451 CDS YP_681865.1 110678858 4197163 1475469..1476290 1 NC_008209.1 nitrous oxide maturation protein NosY 1476290 nosY 4197163 nosY Roseobacter denitrificans OCh 114 nitrous oxide maturation protein NosY YP_681865.1 1475469 D 375451 CDS YP_681866.1 110678859 4197164 1476287..1476799 1 NC_008209.1 nitrous oxide reductase accessory protein NosL 1476799 nosL 4197164 nosL Roseobacter denitrificans OCh 114 nitrous oxide reductase accessory protein NosL YP_681866.1 1476287 D 375451 CDS YP_681867.1 110678860 4197165 1476796..1477698 1 NC_008209.1 nitrous-oxide reductase nosX 1477698 nosX 4197165 nosX Roseobacter denitrificans OCh 114 nitrous-oxide reductase nosX YP_681867.1 1476796 D 375451 CDS YP_681868.1 110678861 4197166 complement(1477772..1478464) 1 NC_008209.1 cyclic nucleotide-binding protein 1478464 4197166 RD1_1553 Roseobacter denitrificans OCh 114 cyclic nucleotide-binding protein YP_681868.1 1477772 R 375451 CDS YP_681869.1 110678862 4197167 1478704..1479438 1 NC_008209.1 transcriptional activator 1479438 hbaR 4197167 hbaR Roseobacter denitrificans OCh 114 transcriptional activator YP_681869.1 1478704 D 375451 CDS YP_681870.1 110678863 4197168 1479401..1479988 1 NC_008209.1 hypothetical protein 1479988 4197168 RD1_1556 Roseobacter denitrificans OCh 114 hypothetical protein YP_681870.1 1479401 D 375451 CDS YP_681871.1 110678864 4197169 complement(1480088..1480339) 1 NC_008209.1 nitric oxide reductase F protein 1480339 norF 4197169 norF Roseobacter denitrificans OCh 114 nitric oxide reductase F protein YP_681871.1 1480088 R 375451 CDS YP_681872.1 110678865 4197170 complement(1480336..1480866) 1 NC_008209.1 NorE protein 1480866 norE 4197170 norE Roseobacter denitrificans OCh 114 NorE protein YP_681872.1 1480336 R 375451 CDS YP_681873.1 110678866 4197171 complement(1480863..1482770) 1 NC_008209.1 nitric oxide reductase D protein 1482770 norD 4197171 norD Roseobacter denitrificans OCh 114 nitric oxide reductase D protein YP_681873.1 1480863 R 375451 CDS YP_681874.1 110678867 4197172 complement(1482774..1483586) 1 NC_008209.1 denitrification regulatory protein nirQ 1483586 norQ 4197172 norQ Roseobacter denitrificans OCh 114 denitrification regulatory protein nirQ YP_681874.1 1482774 R 375451 CDS YP_681875.1 110678868 4197134 complement(1483583..1484953) 1 NC_008209.1 nitric-oxide reductase subunit B 1484953 norB 4197134 norB Roseobacter denitrificans OCh 114 nitric-oxide reductase subunit B YP_681875.1 1483583 R 375451 CDS YP_681876.1 110678869 4197135 complement(1484963..1485415) 1 NC_008209.1 NorC-like protein 1485415 norC 4197135 norC Roseobacter denitrificans OCh 114 NorC-like protein YP_681876.1 1484963 R 375451 CDS YP_681877.1 110678870 4197136 complement(1485499..1485876) 1 NC_008209.1 cytochrome c2 1485876 cycA 4197136 cycA Roseobacter denitrificans OCh 114 cytochrome c2 YP_681877.1 1485499 R 375451 CDS YP_681878.1 110678871 4197137 complement(1485900..1487870) 1 NC_008209.1 nitrous oxide reductase regulatory protein NosR 1487870 nosR 4197137 nosR Roseobacter denitrificans OCh 114 nitrous oxide reductase regulatory protein NosR YP_681878.1 1485900 R 375451 CDS YP_681879.1 110678872 4197138 1488045..1489742 1 NC_008209.1 nitrite reductase 1489742 nirS 4197138 nirS Roseobacter denitrificans OCh 114 nitrite reductase YP_681879.1 1488045 D 375451 CDS YP_681880.1 110678873 4197139 1489854..1490645 1 NC_008209.1 uroporphyrin-III C-methyltransferase 1490645 nirE 4197139 nirE Roseobacter denitrificans OCh 114 uroporphyrin-III C-methyltransferase YP_681880.1 1489854 D 375451 CDS YP_681881.1 110678874 4197140 1490638..1490955 1 NC_008209.1 cytochrome c (c55X) 1490955 nirC 4197140 nirC Roseobacter denitrificans OCh 114 cytochrome c (c55X) YP_681881.1 1490638 D 375451 CDS YP_681882.1 110678875 4197141 1490955..1492106 1 NC_008209.1 cytochrome cd1 1492106 nirF 4197141 nirF Roseobacter denitrificans OCh 114 cytochrome cd1 YP_681882.1 1490955 D 375451 CDS YP_681883.1 110678876 4197142 1492117..1493121 1 NC_008209.1 nitrite reductase heme biosynthesis D protein 1493121 nirD 4197142 nirD Roseobacter denitrificans OCh 114 nitrite reductase heme biosynthesis D protein YP_681883.1 1492117 D 375451 CDS YP_681884.1 110678877 4197143 1493111..1493560 1 NC_008209.1 nitrite reductase heme biosynthesis G 1493560 nirG 4197143 nirG Roseobacter denitrificans OCh 114 nitrite reductase heme biosynthesis G YP_681884.1 1493111 D 375451 CDS YP_681885.1 110678878 4197144 1493557..1494048 1 NC_008209.1 nitrite reductase heme biosynthesis H protein 1494048 nirH 4197144 nirH Roseobacter denitrificans OCh 114 nitrite reductase heme biosynthesis H protein YP_681885.1 1493557 D 375451 CDS YP_681886.1 110678879 4197145 1494048..1495262 1 NC_008209.1 nitrite reductase heme biosynthesis J protein 1495262 nirJ 4197145 nirJ Roseobacter denitrificans OCh 114 nitrite reductase heme biosynthesis J protein YP_681886.1 1494048 D 375451 CDS YP_681887.1 110678880 4197146 1495237..1496784 1 NC_008209.1 nitrite reductase N 1496784 nirN 4197146 nirN Roseobacter denitrificans OCh 114 nitrite reductase N YP_681887.1 1495237 D 375451 CDS YP_681888.1 110678881 4197147 1496741..1497493 1 NC_008209.1 CbiX protein 1497493 cbiX 4197147 cbiX Roseobacter denitrificans OCh 114 CbiX protein YP_681888.1 1496741 D 375451 CDS YP_681889.1 110678882 4197148 1497490..1497726 1 NC_008209.1 hypothetical protein 1497726 4197148 RD1_1575 Roseobacter denitrificans OCh 114 hypothetical protein YP_681889.1 1497490 D 375451 CDS YP_681890.1 110678883 4197149 1497792..1499006 1 NC_008209.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1499006 hemA 4197149 hemA Roseobacter denitrificans OCh 114 5-aminolevulinate synthase YP_681890.1 1497792 D 375451 CDS YP_681891.1 110678884 4197150 1499281..1500342 1 NC_008209.1 glycosyl transferase family protein 1500342 4197150 RD1_1577 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_681891.1 1499281 D 375451 CDS YP_681892.1 110678885 4197151 1500548..1501972 1 NC_008209.1 polysaccharide biosynthesis protein 1501972 4197151 RD1_1579 Roseobacter denitrificans OCh 114 polysaccharide biosynthesis protein YP_681892.1 1500548 D 375451 CDS YP_681893.1 110678886 4197152 complement(1502013..1503008) 1 NC_008209.1 glycosyl transferase family protein 1503008 4197152 RD1_1580 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_681893.1 1502013 R 375451 CDS YP_681894.1 110678887 4197153 1503060..1503164 1 NC_008209.1 hypothetical protein 1503164 4197153 RD1_1581 Roseobacter denitrificans OCh 114 hypothetical protein YP_681894.1 1503060 D 375451 CDS YP_681895.1 110678888 4197115 complement(1503197..1504837) 1 NC_008209.1 alcohol dehydrogenase 1504837 alkJ 4197115 alkJ Roseobacter denitrificans OCh 114 alcohol dehydrogenase YP_681895.1 1503197 R 375451 CDS YP_681896.1 110678889 4197116 1505122..1506108 1 NC_008209.1 TRAP-type transporter 1506108 4197116 RD1_1583 Roseobacter denitrificans OCh 114 TRAP-type transporter YP_681896.1 1505122 D 375451 CDS YP_681897.1 110678890 4197117 1506223..1508451 1 NC_008209.1 hypothetical protein 1508451 4197117 RD1_1584 Roseobacter denitrificans OCh 114 hypothetical protein YP_681897.1 1506223 D 375451 CDS YP_681898.1 110678891 4197118 1509048..1529096 1 NC_008209.1 VBCS repeat-containing protein 1529096 4197118 RD1_1585 Roseobacter denitrificans OCh 114 VBCS repeat-containing protein YP_681898.1 1509048 D 375451 CDS YP_681899.1 110678892 4197119 complement(1529274..1530266) 1 NC_008209.1 aldo/keto reductase 1530266 4197119 RD1_1586 Roseobacter denitrificans OCh 114 aldo/keto reductase YP_681899.1 1529274 R 375451 CDS YP_681900.1 110678893 4197120 complement(1530411..1533602) 1 NC_008209.1 RND multidrug efflux transporter MexF 1533602 mexF 4197120 mexF Roseobacter denitrificans OCh 114 RND multidrug efflux transporter MexF YP_681900.1 1530411 R 375451 CDS YP_681901.1 110678894 4197121 complement(1533556..1534785) 1 NC_008209.1 RND efflux membrane fusion protein 1534785 4197121 RD1_1588 Roseobacter denitrificans OCh 114 RND efflux membrane fusion protein YP_681901.1 1533556 R 375451 CDS YP_681902.1 110678895 4197122 complement(1534871..1536253) 1 NC_008209.1 hypothetical protein 1536253 4197122 RD1_1589 Roseobacter denitrificans OCh 114 hypothetical protein YP_681902.1 1534871 R 375451 CDS YP_681903.1 110678896 4197123 complement(1536349..1536927) 1 NC_008209.1 thiol:disulfide interchange protein tlpA 1536927 tlpA 4197123 tlpA Roseobacter denitrificans OCh 114 thiol:disulfide interchange protein tlpA YP_681903.1 1536349 R 375451 CDS YP_681904.1 110678897 4197124 1536952..1538352 1 NC_008209.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1538352 argH 4197124 argH Roseobacter denitrificans OCh 114 argininosuccinate lyase YP_681904.1 1536952 D 375451 CDS YP_681905.1 110678898 4197125 1538334..1538528 1 NC_008209.1 lipoprotein 1538528 4197125 RD1_1592 Roseobacter denitrificans OCh 114 lipoprotein YP_681905.1 1538334 D 375451 CDS YP_681906.1 110678899 4197126 1538534..1538692 1 NC_008209.1 hypothetical protein 1538692 4197126 RD1_1593 Roseobacter denitrificans OCh 114 hypothetical protein YP_681906.1 1538534 D 375451 CDS YP_681907.1 110678900 4197127 1538694..1539008 1 NC_008209.1 hypothetical protein 1539008 4197127 RD1_1594 Roseobacter denitrificans OCh 114 hypothetical protein YP_681907.1 1538694 D 375451 CDS YP_681908.1 110678901 4197128 1539099..1540364 1 NC_008209.1 diaminopimelate decarboxylase 1540364 lysA 4197128 lysA Roseobacter denitrificans OCh 114 diaminopimelate decarboxylase YP_681908.1 1539099 D 375451 CDS YP_681909.1 110678902 4197129 1540407..1542998 1 NC_008209.1 hypothetical protein 1542998 4197129 RD1_1596 Roseobacter denitrificans OCh 114 hypothetical protein YP_681909.1 1540407 D 375451 CDS YP_681910.1 110678903 4197130 complement(1542995..1543111) 1 NC_008209.1 hypothetical protein 1543111 4197130 RD1_1597 Roseobacter denitrificans OCh 114 hypothetical protein YP_681910.1 1542995 R 375451 CDS YP_681911.1 110678904 4197131 complement(1543224..1544033) 1 NC_008209.1 hypothetical protein 1544033 4197131 RD1_1598 Roseobacter denitrificans OCh 114 hypothetical protein YP_681911.1 1543224 R 375451 CDS YP_681912.1 110678905 4197132 1544199..1544876 1 NC_008209.1 cell division ATP-binding protein 1544876 ftsE 4197132 ftsE Roseobacter denitrificans OCh 114 cell division ATP-binding protein YP_681912.1 1544199 D 375451 CDS YP_681913.1 110678906 4197133 1544876..1545766 1 NC_008209.1 cell division permease 1545766 4197133 RD1_1600 Roseobacter denitrificans OCh 114 cell division permease YP_681913.1 1544876 D 375451 CDS YP_681914.1 110678907 4197095 1545766..1546497 1 NC_008209.1 acyltransferase 1546497 4197095 RD1_1601 Roseobacter denitrificans OCh 114 acyltransferase YP_681914.1 1545766 D 375451 CDS YP_681915.1 110678908 4197096 1546481..1547098 1 NC_008209.1 pyridoxamine 5'-phosphate oxidase family protein 1547098 4197096 RD1_1602 Roseobacter denitrificans OCh 114 pyridoxamine 5'-phosphate oxidase family protein YP_681915.1 1546481 D 375451 CDS YP_681916.1 110678909 4197097 complement(1547115..1548503) 1 NC_008209.1 dihydrolipoamide dehydrogenase 1548503 lpdA 4197097 lpdA Roseobacter denitrificans OCh 114 dihydrolipoamide dehydrogenase YP_681916.1 1547115 R 375451 CDS YP_681917.1 110678910 4197098 1548516..1548650 1 NC_008209.1 hypothetical protein 1548650 4197098 RD1_1604 Roseobacter denitrificans OCh 114 hypothetical protein YP_681917.1 1548516 D 375451 CDS YP_681918.1 110678911 4197099 complement(1548658..1549056) 1 NC_008209.1 hypothetical protein 1549056 4197099 RD1_1605 Roseobacter denitrificans OCh 114 hypothetical protein YP_681918.1 1548658 R 375451 CDS YP_681919.1 110678912 4197100 complement(1549037..1549306) 1 NC_008209.1 hypothetical protein 1549306 4197100 RD1_1606 Roseobacter denitrificans OCh 114 hypothetical protein YP_681919.1 1549037 R 375451 CDS YP_681920.1 110678913 4197101 complement(1549317..1549700) 1 NC_008209.1 hypothetical protein 1549700 4197101 RD1_1607 Roseobacter denitrificans OCh 114 hypothetical protein YP_681920.1 1549317 R 375451 CDS YP_681921.1 110678914 4197102 complement(1550270..1551766) 1 NC_008209.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1551766 sucB 4197102 sucB Roseobacter denitrificans OCh 114 dihydrolipoamide succinyltransferase YP_681921.1 1550270 R 375451 CDS YP_681922.1 110678915 4197103 complement(1551770..1554730) 1 NC_008209.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1554730 sucA 4197103 sucA Roseobacter denitrificans OCh 114 2-oxoglutarate dehydrogenase E1 YP_681922.1 1551770 R 375451 CDS YP_681923.1 110678916 4197104 complement(1554727..1555233) 1 NC_008209.1 hypothetical protein 1555233 4197104 RD1_1610 Roseobacter denitrificans OCh 114 hypothetical protein YP_681923.1 1554727 R 375451 CDS YP_681924.1 110678917 4197105 complement(1555436..1556323) 1 NC_008209.1 succinyl-CoA synthase subunit alpha 1556323 sucD 4197105 sucD Roseobacter denitrificans OCh 114 succinyl-CoA synthase subunit alpha YP_681924.1 1555436 R 375451 CDS YP_681925.1 110678918 4197106 complement(1556339..1556851) 1 NC_008209.1 hypothetical protein 1556851 4197106 RD1_1612 Roseobacter denitrificans OCh 114 hypothetical protein YP_681925.1 1556339 R 375451 CDS YP_681926.1 110678919 4197107 complement(1556848..1557429) 1 NC_008209.1 hypothetical protein 1557429 4197107 RD1_1613 Roseobacter denitrificans OCh 114 hypothetical protein YP_681926.1 1556848 R 375451 CDS YP_681927.1 110678920 4197108 complement(1557558..1557980) 1 NC_008209.1 hypothetical protein 1557980 4197108 RD1_1614 Roseobacter denitrificans OCh 114 hypothetical protein YP_681927.1 1557558 R 375451 CDS YP_681928.1 110678921 4197109 complement(1557984..1559177) 1 NC_008209.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1559177 sucC 4197109 sucC Roseobacter denitrificans OCh 114 succinyl-CoA synthetase subunit beta YP_681928.1 1557984 R 375451 CDS YP_681929.1 110678922 4197110 1559319..1559609 1 NC_008209.1 hypothetical protein 1559609 4197110 RD1_1616 Roseobacter denitrificans OCh 114 hypothetical protein YP_681929.1 1559319 D 375451 CDS YP_681930.1 110678923 4197111 complement(1559670..1560632) 1 NC_008209.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1560632 mdh 4197111 mdh Roseobacter denitrificans OCh 114 malate dehydrogenase YP_681930.1 1559670 R 375451 CDS YP_681931.1 110678924 4197112 1560780..1561535 1 NC_008209.1 hypothetical protein 1561535 4197112 RD1_1618 Roseobacter denitrificans OCh 114 hypothetical protein YP_681931.1 1560780 D 375451 CDS YP_681932.1 110678925 4197113 complement(1561607..1561939) 1 NC_008209.1 hypothetical protein 1561939 4197113 RD1_1619 Roseobacter denitrificans OCh 114 hypothetical protein YP_681932.1 1561607 R 375451 CDS YP_681933.1 110678926 4197114 1562307..1563164 1 NC_008209.1 citrate lyase subunit beta 1563164 citE 4197114 citE Roseobacter denitrificans OCh 114 citrate lyase subunit beta YP_681933.1 1562307 D 375451 CDS YP_681934.1 110678927 4197076 1563169..1563726 1 NC_008209.1 hypothetical protein 1563726 4197076 RD1_1621 Roseobacter denitrificans OCh 114 hypothetical protein YP_681934.1 1563169 D 375451 CDS YP_681935.1 110678928 4197077 1563743..1563946 1 NC_008209.1 hypothetical protein 1563946 4197077 RD1_1622 Roseobacter denitrificans OCh 114 hypothetical protein YP_681935.1 1563743 D 375451 CDS YP_681936.1 110678929 4197078 1563946..1564980 1 NC_008209.1 MaoC family protein 1564980 4197078 RD1_1623 Roseobacter denitrificans OCh 114 MaoC family protein YP_681936.1 1563946 D 375451 CDS YP_681937.1 110678930 4197079 1565052..1565786 1 NC_008209.1 hypothetical protein 1565786 4197079 RD1_1624 Roseobacter denitrificans OCh 114 hypothetical protein YP_681937.1 1565052 D 375451 CDS YP_681938.1 110678931 4197080 1565842..1566507 1 NC_008209.1 von Willebrand factor A 1566507 4197080 RD1_1625 Roseobacter denitrificans OCh 114 von Willebrand factor A YP_681938.1 1565842 D 375451 CDS YP_681939.1 110678932 4197081 1566662..1567045 1 NC_008209.1 succinate dehydrogenase, cytochrome b556 subunit 1567045 sdhC 4197081 sdhC Roseobacter denitrificans OCh 114 succinate dehydrogenase, cytochrome b556 subunit YP_681939.1 1566662 D 375451 CDS YP_681940.1 110678933 4197082 1567056..1567427 1 NC_008209.1 hypothetical protein 1567427 sdhD 4197082 sdhD Roseobacter denitrificans OCh 114 hypothetical protein YP_681940.1 1567056 D 375451 CDS YP_681941.1 110678934 4197083 1567480..1569285 1 NC_008209.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1569285 sdhA 4197083 sdhA Roseobacter denitrificans OCh 114 succinate dehydrogenase flavoprotein subunit YP_681941.1 1567480 D 375451 CDS YP_681942.1 110678935 4197084 1569245..1569643 1 NC_008209.1 hypothetical protein 1569643 4197084 RD1_1629 Roseobacter denitrificans OCh 114 hypothetical protein YP_681942.1 1569245 D 375451 CDS YP_681943.1 110678936 4197085 1569669..1570448 1 NC_008209.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1570448 sdhB 4197085 sdhB Roseobacter denitrificans OCh 114 succinate dehydrogenase iron-sulfur subunit YP_681943.1 1569669 D 375451 CDS YP_681944.1 110678937 4197086 1570458..1571171 1 NC_008209.1 hypothetical protein 1571171 4197086 RD1_1631 Roseobacter denitrificans OCh 114 hypothetical protein YP_681944.1 1570458 D 375451 CDS YP_681945.1 110678938 4197087 1571171..1571377 1 NC_008209.1 hypothetical protein 1571377 4197087 RD1_1632 Roseobacter denitrificans OCh 114 hypothetical protein YP_681945.1 1571171 D 375451 CDS YP_681946.1 110678939 4197088 1571435..1572280 1 NC_008209.1 hypothetical protein 1572280 4197088 RD1_1633 Roseobacter denitrificans OCh 114 hypothetical protein YP_681946.1 1571435 D 375451 CDS YP_681947.1 110678940 4197089 complement(1572283..1572987) 1 NC_008209.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1572987 deoD 4197089 deoD Roseobacter denitrificans OCh 114 purine nucleoside phosphorylase YP_681947.1 1572283 R 375451 CDS YP_681948.1 110678941 4197090 complement(1573051..1575018) 1 NC_008209.1 methylmalonyl-CoA mutase 1575018 mutB 4197090 mutB Roseobacter denitrificans OCh 114 methylmalonyl-CoA mutase YP_681948.1 1573051 R 375451 CDS YP_681949.1 110678942 4197091 1575269..1576639 1 NC_008209.1 acyltransferase 1576639 4197091 RD1_1636 Roseobacter denitrificans OCh 114 acyltransferase YP_681949.1 1575269 D 375451 CDS YP_681950.1 110678943 4197092 1576775..1578055 1 NC_008209.1 crotonyl-CoA reductase 1578055 ccrA 4197092 ccrA Roseobacter denitrificans OCh 114 crotonyl-CoA reductase YP_681950.1 1576775 D 375451 CDS YP_681951.1 110678944 4197093 1578424..1579143 1 NC_008209.1 transcriptional activator protein RaiR 1579143 rhlR 4197093 rhlR Roseobacter denitrificans OCh 114 transcriptional activator protein RaiR YP_681951.1 1578424 D 375451 CDS YP_681952.1 110678945 4197094 1579259..1579897 1 NC_008209.1 autoinducer synthesis protein Tral 1579897 tral 4197094 tral Roseobacter denitrificans OCh 114 autoinducer synthesis protein Tral YP_681952.1 1579259 D 375451 CDS YP_681953.1 110678946 4197056 1580085..1581485 1 NC_008209.1 hypothetical protein 1581485 4197056 RD1_1640 Roseobacter denitrificans OCh 114 hypothetical protein YP_681953.1 1580085 D 375451 CDS YP_681954.1 110678947 4197057 complement(1581505..1582278) 1 NC_008209.1 hypothetical protein 1582278 4197057 RD1_1641 Roseobacter denitrificans OCh 114 hypothetical protein YP_681954.1 1581505 R 375451 CDS YP_681955.1 110678948 4197058 complement(1582281..1583219) 1 NC_008209.1 hypothetical protein 1583219 4197058 RD1_1642 Roseobacter denitrificans OCh 114 hypothetical protein YP_681955.1 1582281 R 375451 CDS YP_681956.1 110678949 4197059 complement(1583291..1584259) 1 NC_008209.1 sugar ABC transporter permease 1584259 4197059 RD1_1643 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_681956.1 1583291 R 375451 CDS YP_681957.1 110678950 4197060 complement(1584259..1585353) 1 NC_008209.1 sugar ABC transporter permease 1585353 4197060 RD1_1644 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_681957.1 1584259 R 375451 CDS YP_681958.1 110678951 4197061 complement(1585358..1586935) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 1586935 4197061 RD1_1645 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_681958.1 1585358 R 375451 CDS YP_681959.1 110678952 4197062 complement(1586914..1587909) 1 NC_008209.1 sugar ABC transporter substrate-binding protein 1587909 4197062 RD1_1647 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_681959.1 1586914 R 375451 CDS YP_681960.1 110678953 4197063 complement(1588046..1588477) 1 NC_008209.1 ribosomal-protein-alanine acetyltransferase 1588477 4197063 RD1_1648 Roseobacter denitrificans OCh 114 ribosomal-protein-alanine acetyltransferase YP_681960.1 1588046 R 375451 CDS YP_681961.1 110678954 4197064 complement(1588474..1589088) 1 NC_008209.1 glycoprotease family protein 1589088 4197064 RD1_1649 Roseobacter denitrificans OCh 114 glycoprotease family protein YP_681961.1 1588474 R 375451 CDS YP_681962.1 110678955 4197065 complement(1589135..1589698) 1 NC_008209.1 NifU-like domain-containing protein 1589698 4197065 RD1_1650 Roseobacter denitrificans OCh 114 NifU-like domain-containing protein YP_681962.1 1589135 R 375451 CDS YP_681963.1 110678956 4197066 complement(1589928..1590383) 1 NC_008209.1 hypothetical protein 1590383 4197066 RD1_1652 Roseobacter denitrificans OCh 114 hypothetical protein YP_681963.1 1589928 R 375451 CDS YP_681964.1 110678957 4197067 1590521..1590916 1 NC_008209.1 photopigment and puc activator 1590916 4197067 RD1_1653 Roseobacter denitrificans OCh 114 photopigment and puc activator YP_681964.1 1590521 D 375451 CDS YP_681965.1 110678958 4197068 complement(1590911..1591777) 1 NC_008209.1 aminotransferase 1591777 ilvE 4197068 ilvE Roseobacter denitrificans OCh 114 aminotransferase YP_681965.1 1590911 R 375451 CDS YP_681966.1 110678959 4197069 complement(1591849..1592076) 1 NC_008209.1 hypothetical protein 1592076 4197069 RD1_1655 Roseobacter denitrificans OCh 114 hypothetical protein YP_681966.1 1591849 R 375451 CDS YP_681967.1 110678960 4197070 1592204..1592914 1 NC_008209.1 M48 family peptidase 1592914 4197070 RD1_1656 Roseobacter denitrificans OCh 114 M48 family peptidase YP_681967.1 1592204 D 375451 CDS YP_681968.1 110678961 4197071 complement(1592915..1593304) 1 NC_008209.1 hypothetical protein 1593304 4197071 RD1_1657 Roseobacter denitrificans OCh 114 hypothetical protein YP_681968.1 1592915 R 375451 CDS YP_681969.1 110678962 4197072 complement(1593377..1593619) 1 NC_008209.1 hypothetical protein 1593619 4197072 RD1_1658 Roseobacter denitrificans OCh 114 hypothetical protein YP_681969.1 1593377 R 375451 CDS YP_681970.1 110678963 4197073 complement(1593682..1595061) 1 NC_008209.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 1595061 rimO 4197073 rimO Roseobacter denitrificans OCh 114 ribosomal protein S12 methylthiotransferase YP_681970.1 1593682 R 375451 CDS YP_681971.1 110678964 4197074 1595127..1597079 1 NC_008209.1 AsmA family protein 1597079 4197074 RD1_1660 Roseobacter denitrificans OCh 114 AsmA family protein YP_681971.1 1595127 D 375451 CDS YP_681972.1 110678965 4197075 complement(1597171..1598004) 1 NC_008209.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1598004 kdsA 4197075 kdsA Roseobacter denitrificans OCh 114 2-dehydro-3-deoxyphosphooctonate aldolase YP_681972.1 1597171 R 375451 CDS YP_681973.1 110678966 4197037 complement(1598006..1598206) 1 NC_008209.1 hypothetical protein 1598206 4197037 RD1_1662 Roseobacter denitrificans OCh 114 hypothetical protein YP_681973.1 1598006 R 375451 CDS YP_681974.1 110678967 4197038 1598408..1599004 1 NC_008209.1 hypothetical protein 1599004 4197038 RD1_1663 Roseobacter denitrificans OCh 114 hypothetical protein YP_681974.1 1598408 D 375451 CDS YP_681975.1 110678968 4197039 1599484..1600167 1 NC_008209.1 hypothetical protein 1600167 4197039 RD1_1664 Roseobacter denitrificans OCh 114 hypothetical protein YP_681975.1 1599484 D 375451 CDS YP_681976.1 110678969 4197040 1600340..1600864 1 NC_008209.1 hypothetical protein 1600864 4197040 RD1_1665 Roseobacter denitrificans OCh 114 hypothetical protein YP_681976.1 1600340 D 375451 CDS YP_681977.1 110678970 4197041 1600864..1601358 1 NC_008209.1 hypothetical protein 1601358 4197041 RD1_1666 Roseobacter denitrificans OCh 114 hypothetical protein YP_681977.1 1600864 D 375451 CDS YP_681978.1 110678971 4197042 1601319..1601453 1 NC_008209.1 hypothetical protein 1601453 4197042 RD1_1667 Roseobacter denitrificans OCh 114 hypothetical protein YP_681978.1 1601319 D 375451 CDS YP_681979.1 110678972 4197043 complement(1601464..1603356) 1 NC_008209.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1603356 opgH 4197043 opgH Roseobacter denitrificans OCh 114 glucosyltransferase MdoH YP_681979.1 1601464 R 375451 CDS YP_681980.1 110678973 4197044 complement(1603353..1604879) 1 NC_008209.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1604879 mdoG 4197044 mdoG Roseobacter denitrificans OCh 114 glucan biosynthesis protein G YP_681980.1 1603353 R 375451 CDS YP_681981.1 110678974 4197045 complement(1604879..1606099) 1 NC_008209.1 hypothetical protein 1606099 opgC 4197045 opgC Roseobacter denitrificans OCh 114 hypothetical protein YP_681981.1 1604879 R 375451 CDS YP_681982.1 110678975 4197046 complement(1606148..1607488) 1 NC_008209.1 hypothetical protein 1607488 4197046 RD1_1671 Roseobacter denitrificans OCh 114 hypothetical protein YP_681982.1 1606148 R 375451 CDS YP_681983.1 110678976 4197047 complement(1607674..1608882) 1 NC_008209.1 CAIB/BAIF family protein 1608882 4197047 RD1_1673 Roseobacter denitrificans OCh 114 CAIB/BAIF family protein YP_681983.1 1607674 R 375451 CDS YP_681984.1 110678977 4197048 complement(1608866..1610488) 1 NC_008209.1 acetolactate synthase 1610488 alsS 4197048 alsS Roseobacter denitrificans OCh 114 acetolactate synthase YP_681984.1 1608866 R 375451 CDS YP_681985.1 110678978 4197049 complement(1610609..1611172) 1 NC_008209.1 hypothetical protein 1611172 4197049 RD1_1675 Roseobacter denitrificans OCh 114 hypothetical protein YP_681985.1 1610609 R 375451 CDS YP_681986.1 110678979 4197050 1611561..1612736 1 NC_008209.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase 1612736 argD 4197050 argD Roseobacter denitrificans OCh 114 acetylornithine transaminase YP_681986.1 1611561 D 375451 CDS YP_681987.1 110678980 4197051 1612796..1613722 1 NC_008209.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1613722 argF 4197051 argF Roseobacter denitrificans OCh 114 ornithine carbamoyltransferase YP_681987.1 1612796 D 375451 CDS YP_681988.1 110678981 4197052 complement(1613830..1616271) 1 NC_008209.1 ATP-dependent helicase HrpB 1616271 hrpB 4197052 hrpB Roseobacter denitrificans OCh 114 ATP-dependent helicase HrpB YP_681988.1 1613830 R 375451 CDS YP_681989.1 110678982 4197053 1616365..1617354 1 NC_008209.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 1617354 4197053 RD1_1679 Roseobacter denitrificans OCh 114 arginine/ornithine transport system ATPase YP_681989.1 1616365 D 375451 CDS YP_681990.1 110678983 4197054 1617428..1617790 1 NC_008209.1 50S ribosomal protein L28 1617790 rpmB 4197054 rpmB Roseobacter denitrificans OCh 114 50S ribosomal protein L28 YP_681990.1 1617428 D 375451 CDS YP_681991.1 110678984 4197055 1617850..1618245 1 NC_008209.1 hypothetical protein 1618245 4197055 RD1_1681 Roseobacter denitrificans OCh 114 hypothetical protein YP_681991.1 1617850 D 375451 CDS YP_681992.1 110678985 4197017 1618291..1618785 1 NC_008209.1 hypothetical protein 1618785 4197017 RD1_1682 Roseobacter denitrificans OCh 114 hypothetical protein YP_681992.1 1618291 D 375451 CDS YP_681993.1 110678986 4197018 complement(1618798..1619490) 1 NC_008209.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1619490 npdA 4197018 npdA Roseobacter denitrificans OCh 114 NAD-dependent deacetylase YP_681993.1 1618798 R 375451 CDS YP_681994.1 110678987 4197019 1619629..1620504 1 NC_008209.1 hydrolase 1620504 4197019 RD1_1684 Roseobacter denitrificans OCh 114 hydrolase YP_681994.1 1619629 D 375451 CDS YP_681995.1 110678988 4197020 1620581..1620799 1 NC_008209.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1620799 infA 4197020 infA Roseobacter denitrificans OCh 114 translation initiation factor IF-1 YP_681995.1 1620581 D 375451 CDS YP_681996.1 110678989 4197021 1620803..1621369 1 NC_008209.1 septum formation protein Maf 1621369 maf 4197021 maf Roseobacter denitrificans OCh 114 septum formation protein Maf YP_681996.1 1620803 D 375451 CDS YP_681997.1 110678990 4197022 1621366..1622388 1 NC_008209.1 ribonuclease G 1622388 4197022 RD1_1687 Roseobacter denitrificans OCh 114 ribonuclease G YP_681997.1 1621366 D 375451 CDS YP_681998.1 110678991 4197023 1622385..1622582 1 NC_008209.1 hypothetical protein 1622582 4197023 RD1_1688 Roseobacter denitrificans OCh 114 hypothetical protein YP_681998.1 1622385 D 375451 CDS YP_681999.1 110678992 4197024 complement(1622598..1624169) 1 NC_008209.1 potassium efflux transporter 1624169 4197024 RD1_1689 Roseobacter denitrificans OCh 114 potassium efflux transporter YP_681999.1 1622598 R 375451 CDS YP_682000.1 110678993 4197025 complement(1624079..1624345) 1 NC_008209.1 hypothetical protein 1624345 4197025 RD1_1690 Roseobacter denitrificans OCh 114 hypothetical protein YP_682000.1 1624079 R 375451 CDS YP_682001.1 110678994 4197026 complement(1624370..1624813) 1 NC_008209.1 transcriptional regulator 1624813 rrf 4197026 rrf Roseobacter denitrificans OCh 114 transcriptional regulator YP_682001.1 1624370 R 375451 CDS YP_682002.1 110678995 4197027 1624896..1625051 1 NC_008209.1 hypothetical protein 1625051 4197027 RD1_1692 Roseobacter denitrificans OCh 114 hypothetical protein YP_682002.1 1624896 D 375451 CDS YP_682003.1 110678996 4197028 1625141..1625431 1 NC_008209.1 hypothetical protein 1625431 4197028 RD1_1693 Roseobacter denitrificans OCh 114 hypothetical protein YP_682003.1 1625141 D 375451 CDS YP_682004.1 110678997 4197029 1625456..1626661 1 NC_008209.1 NnrS protein 1626661 nnrS 4197029 nnrS Roseobacter denitrificans OCh 114 NnrS protein YP_682004.1 1625456 D 375451 CDS YP_682005.1 110678998 4197030 1626658..1627326 1 NC_008209.1 NnrU protein 1627326 nnrU 4197030 nnrU Roseobacter denitrificans OCh 114 NnrU protein YP_682005.1 1626658 D 375451 CDS YP_682006.1 110678999 4197031 1627549..1628898 1 NC_008209.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1628898 hemN 4197031 hemN Roseobacter denitrificans OCh 114 coproporphyrinogen III oxidase YP_682006.1 1627549 D 375451 CDS YP_682007.1 110679000 4197032 1629156..1630820 1 NC_008209.1 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 1630820 bchE 4197032 bchE Roseobacter denitrificans OCh 114 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase YP_682007.1 1629156 D 375451 CDS YP_682008.1 110679001 4197033 1631057..1632271 1 NC_008209.1 glycerophosphoryl diester phosphodiesterase family protein 1632271 4197033 RD1_1698 Roseobacter denitrificans OCh 114 glycerophosphoryl diester phosphodiesterase family protein YP_682008.1 1631057 D 375451 CDS YP_682009.1 110679002 4197034 complement(1632471..1633922) 1 NC_008209.1 sugar transferase 1633922 4197034 RD1_1699 Roseobacter denitrificans OCh 114 sugar transferase YP_682009.1 1632471 R 375451 CDS YP_682010.1 110679003 4197035 complement(1634085..1635086) 1 NC_008209.1 AraC family transcriptional regulator 1635086 4197035 RD1_1700 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_682010.1 1634085 R 375451 CDS YP_682011.1 110679004 4197036 1635191..1636444 1 NC_008209.1 sarcosine oxidase, beta subunit 1636444 soxB 4197036 soxB Roseobacter denitrificans OCh 114 sarcosine oxidase, beta subunit YP_682011.1 1635191 D 375451 CDS YP_682012.1 110679005 4196998 1636456..1636755 1 NC_008209.1 sarcosine oxidase subunit delta 1636755 soxD 4196998 soxD Roseobacter denitrificans OCh 114 sarcosine oxidase subunit delta YP_682012.1 1636456 D 375451 CDS YP_682013.1 110679006 4196999 1636752..1639754 1 NC_008209.1 sarcosine oxidase, alpha subunit 1639754 soxA 4196999 soxA Roseobacter denitrificans OCh 114 sarcosine oxidase, alpha subunit YP_682013.1 1636752 D 375451 CDS YP_682014.1 110679007 4197000 1639768..1640298 1 NC_008209.1 sarcosine oxidase, gamma subunit 1640298 soxG 4197000 soxG Roseobacter denitrificans OCh 114 sarcosine oxidase, gamma subunit YP_682014.1 1639768 D 375451 CDS YP_682015.1 110679008 4197001 complement(1640453..1641601) 1 NC_008209.1 major facilitator transporter 1641601 4197001 RD1_1707 Roseobacter denitrificans OCh 114 major facilitator transporter YP_682015.1 1640453 R 375451 CDS YP_682016.1 110679009 4197002 complement(1641679..1642449) 1 NC_008209.1 hypothetical protein 1642449 4197002 RD1_1708 Roseobacter denitrificans OCh 114 hypothetical protein YP_682016.1 1641679 R 375451 CDS YP_682017.1 110679010 4197003 1642702..1644561 1 NC_008209.1 diguanylate cyclase 1644561 4197003 RD1_1709 Roseobacter denitrificans OCh 114 diguanylate cyclase YP_682017.1 1642702 D 375451 CDS YP_682018.1 110679011 4197004 1644796..1644894 1 NC_008209.1 hypothetical protein 1644894 4197004 RD1_1710 Roseobacter denitrificans OCh 114 hypothetical protein YP_682018.1 1644796 D 375451 CDS YP_682019.1 110679012 4197005 1644913..1645179 1 NC_008209.1 hypothetical protein 1645179 4197005 RD1_1711 Roseobacter denitrificans OCh 114 hypothetical protein YP_682019.1 1644913 D 375451 CDS YP_682020.1 110679013 4197006 complement(1645151..1645414) 1 NC_008209.1 hypothetical protein 1645414 4197006 RD1_1712 Roseobacter denitrificans OCh 114 hypothetical protein YP_682020.1 1645151 R 375451 CDS YP_682021.1 110679014 4197007 complement(1645414..1646550) 1 NC_008209.1 acyl-CoA dehydrogenase 1646550 4197007 RD1_1713 Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_682021.1 1645414 R 375451 CDS YP_682022.1 110679015 4197008 complement(1646731..1647045) 1 NC_008209.1 hypothetical protein 1647045 4197008 RD1_1714 Roseobacter denitrificans OCh 114 hypothetical protein YP_682022.1 1646731 R 375451 CDS YP_682023.1 110679016 4197009 complement(1647154..1648704) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 1648704 4197009 RD1_1715 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_682023.1 1647154 R 375451 CDS YP_682024.1 110679017 4197010 complement(1648701..1649198) 1 NC_008209.1 TRAP transporter DctQ-like membrane protein 1649198 4197010 RD1_1716 Roseobacter denitrificans OCh 114 TRAP transporter DctQ-like membrane protein YP_682024.1 1648701 R 375451 CDS YP_682025.1 110679018 4197011 complement(1649261..1650346) 1 NC_008209.1 solute-binding family 7 protein 1650346 4197011 RD1_1717 Roseobacter denitrificans OCh 114 solute-binding family 7 protein YP_682025.1 1649261 R 375451 CDS YP_682026.1 110679019 4197012 complement(1650379..1650501) 1 NC_008209.1 hypothetical protein 1650501 4197012 RD1_1718 Roseobacter denitrificans OCh 114 hypothetical protein YP_682026.1 1650379 R 375451 CDS YP_682027.1 110679020 4197013 1650682..1651383 1 NC_008209.1 histidine utilization repressor 1651383 hutC 4197013 hutC Roseobacter denitrificans OCh 114 histidine utilization repressor YP_682027.1 1650682 D 375451 CDS YP_682028.1 110679021 4197014 1651647..1653377 1 NC_008209.1 type I secretion system ATPase 1653377 prsD 4197014 prsD Roseobacter denitrificans OCh 114 type I secretion system ATPase YP_682028.1 1651647 D 375451 CDS YP_682029.1 110679022 4197015 1653374..1654687 1 NC_008209.1 HlyD family type I secretion membrane fusion protein 1654687 4197015 RD1_1721 Roseobacter denitrificans OCh 114 HlyD family type I secretion membrane fusion protein YP_682029.1 1653374 D 375451 CDS YP_682030.1 110679023 4197016 1654865..1655098 1 NC_008209.1 hypothetical protein 1655098 4197016 RD1_1722 Roseobacter denitrificans OCh 114 hypothetical protein YP_682030.1 1654865 D 375451 CDS YP_682031.1 110679024 4196978 1654992..1655246 1 NC_008209.1 hypothetical protein 1655246 4196978 RD1_1723 Roseobacter denitrificans OCh 114 hypothetical protein YP_682031.1 1654992 D 375451 CDS YP_682032.1 110679025 4196979 1655259..1655870 1 NC_008209.1 hypothetical protein 1655870 4196979 RD1_1724 Roseobacter denitrificans OCh 114 hypothetical protein YP_682032.1 1655259 D 375451 CDS YP_682033.1 110679026 4196980 complement(1655919..1657049) 1 NC_008209.1 N-acetylglucosamine-6-phosphate deacetylase 1657049 nagA 4196980 nagA Roseobacter denitrificans OCh 114 N-acetylglucosamine-6-phosphate deacetylase YP_682033.1 1655919 R 375451 CDS YP_682034.1 110679027 4196981 complement(1657046..1658074) 1 NC_008209.1 SIS domain-containing protein 1658074 4196981 RD1_1726 Roseobacter denitrificans OCh 114 SIS domain-containing protein YP_682034.1 1657046 R 375451 CDS YP_682035.1 110679028 4196982 complement(1658071..1658835) 1 NC_008209.1 GntR family transcriptional regulator 1658835 4196982 RD1_1727 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_682035.1 1658071 R 375451 CDS YP_682036.1 110679029 4196983 complement(1658832..1659725) 1 NC_008209.1 N-acetylglucosamine kinase 1659725 4196983 RD1_1728 Roseobacter denitrificans OCh 114 N-acetylglucosamine kinase YP_682036.1 1658832 R 375451 CDS YP_682037.1 110679030 4196984 1660166..1661422 1 NC_008209.1 sugar ABC transporter substrate-binding protein 1661422 4196984 RD1_1729 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_682037.1 1660166 D 375451 CDS YP_682038.1 110679031 4196985 1661502..1662425 1 NC_008209.1 sugar ABC transporter permease 1662425 4196985 RD1_1730 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_682038.1 1661502 D 375451 CDS YP_682039.1 110679032 4196986 1662439..1663278 1 NC_008209.1 sugar ABC transporter permease 1663278 4196986 RD1_1731 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_682039.1 1662439 D 375451 CDS YP_682040.1 110679033 4196987 1663275..1664303 1 NC_008209.1 oxidoreductase 1664303 4196987 RD1_1732 Roseobacter denitrificans OCh 114 oxidoreductase YP_682040.1 1663275 D 375451 CDS YP_682041.1 110679034 4196988 1664300..1665298 1 NC_008209.1 sugar ABC transporter ATP-binding protein 1665298 4196988 RD1_1733 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_682041.1 1664300 D 375451 CDS YP_682042.1 110679035 4196989 complement(1665320..1665832) 1 NC_008209.1 lipoprotein 1665832 4196989 RD1_1734 Roseobacter denitrificans OCh 114 lipoprotein YP_682042.1 1665320 R 375451 CDS YP_682043.1 110679036 4196990 complement(1665814..1666323) 1 NC_008209.1 hypothetical protein 1666323 4196990 RD1_1735 Roseobacter denitrificans OCh 114 hypothetical protein YP_682043.1 1665814 R 375451 CDS YP_682044.1 110679037 4196991 1666253..1666387 1 NC_008209.1 hypothetical protein 1666387 4196991 RD1_1736 Roseobacter denitrificans OCh 114 hypothetical protein YP_682044.1 1666253 D 375451 CDS YP_682045.1 110679038 4196992 complement(1666355..1667605) 1 NC_008209.1 peptide ABC transporter permease 1667605 4196992 RD1_1737 Roseobacter denitrificans OCh 114 peptide ABC transporter permease YP_682045.1 1666355 R 375451 CDS YP_682046.1 110679039 4196993 complement(1667602..1668303) 1 NC_008209.1 bacitracin export ATP-binding protein 1668303 bceA 4196993 bceA Roseobacter denitrificans OCh 114 bacitracin export ATP-binding protein YP_682046.1 1667602 R 375451 CDS YP_682047.1 110679040 4196994 complement(1668317..1668973) 1 NC_008209.1 hypothetical protein 1668973 4196994 RD1_1739 Roseobacter denitrificans OCh 114 hypothetical protein YP_682047.1 1668317 R 375451 CDS YP_682048.1 110679041 4196995 1669444..1670097 1 NC_008209.1 protein-L-isoaspartate O-methyltransferase 1670097 pcm 4196995 pcm Roseobacter denitrificans OCh 114 protein-L-isoaspartate O-methyltransferase YP_682048.1 1669444 D 375451 CDS YP_682049.1 110679042 4196996 1670179..1671579 1 NC_008209.1 TolC family type I secretion outer membrane protein 1671579 4196996 RD1_1742 Roseobacter denitrificans OCh 114 TolC family type I secretion outer membrane protein YP_682049.1 1670179 D 375451 CDS YP_682050.1 110679043 4196997 1671652..1672395 1 NC_008209.1 hypothetical protein 1672395 4196997 RD1_1743 Roseobacter denitrificans OCh 114 hypothetical protein YP_682050.1 1671652 D 375451 CDS YP_682051.1 110679044 4196959 1672532..1673044 1 NC_008209.1 hypothetical protein 1673044 4196959 RD1_1744 Roseobacter denitrificans OCh 114 hypothetical protein YP_682051.1 1672532 D 375451 CDS YP_682052.1 110679045 4196960 complement(1673094..1673414) 1 NC_008209.1 hypothetical protein 1673414 4196960 RD1_1745 Roseobacter denitrificans OCh 114 hypothetical protein YP_682052.1 1673094 R 375451 CDS YP_682053.1 110679046 4196961 1673634..1674197 1 NC_008209.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1674197 efp 4196961 efp Roseobacter denitrificans OCh 114 elongation factor P YP_682053.1 1673634 D 375451 CDS YP_682054.1 110679047 4196962 complement(1674236..1674973) 1 NC_008209.1 glycine cleavage system protein T 1674973 4196962 RD1_1747 Roseobacter denitrificans OCh 114 glycine cleavage system protein T YP_682054.1 1674236 R 375451 CDS YP_682055.1 110679048 4196963 1675041..1675715 1 NC_008209.1 glycosyl transferase family protein 1675715 4196963 RD1_1748 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_682055.1 1675041 D 375451 CDS YP_682056.1 110679049 4196964 complement(1675712..1677565) 1 NC_008209.1 efflux ABC transporter transmembrane ATP-binding protein 1677565 4196964 RD1_1749 Roseobacter denitrificans OCh 114 efflux ABC transporter transmembrane ATP-binding protein YP_682056.1 1675712 R 375451 CDS YP_682057.1 110679050 4196965 1677707..1678939 1 NC_008209.1 serine--glyoxylate aminotransferase 1678939 sgaA 4196965 sgaA Roseobacter denitrificans OCh 114 serine--glyoxylate aminotransferase YP_682057.1 1677707 D 375451 CDS YP_682058.1 110679051 4196966 complement(1678912..1679130) 1 NC_008209.1 hypothetical protein 1679130 4196966 RD1_1751 Roseobacter denitrificans OCh 114 hypothetical protein YP_682058.1 1678912 R 375451 CDS YP_682059.1 110679052 4196967 complement(1679185..1680288) 1 NC_008209.1 catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate; histidinol-phosphate aminotransferase 1680288 4196967 RD1_1752 Roseobacter denitrificans OCh 114 histidinol-phosphate aminotransferase YP_682059.1 1679185 R 375451 CDS YP_682060.1 110679053 4196968 1680402..1681190 1 NC_008209.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1681190 4196968 RD1_1753 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase YP_682060.1 1680402 D 375451 CDS YP_682061.1 110679054 4196969 complement(1681228..1684323) 1 NC_008209.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1684323 valS 4196969 valS Roseobacter denitrificans OCh 114 valyl-tRNA synthetase YP_682061.1 1681228 R 375451 CDS YP_682062.1 110679055 4196970 complement(1684399..1684998) 1 NC_008209.1 hypothetical protein 1684998 4196970 RD1_1756 Roseobacter denitrificans OCh 114 hypothetical protein YP_682062.1 1684399 R 375451 CDS YP_682063.1 110679056 4196971 complement(1684995..1685873) 1 NC_008209.1 phytanoyl-CoA dioxygenase 1685873 4196971 RD1_1757 Roseobacter denitrificans OCh 114 phytanoyl-CoA dioxygenase YP_682063.1 1684995 R 375451 CDS YP_682064.1 110679057 4196972 1686067..1688364 1 NC_008209.1 dehydrogenase 1688364 4196972 RD1_1758 Roseobacter denitrificans OCh 114 dehydrogenase YP_682064.1 1686067 D 375451 CDS YP_682065.1 110679058 4196973 1688342..1689421 1 NC_008209.1 hypothetical protein 1689421 4196973 RD1_1759 Roseobacter denitrificans OCh 114 hypothetical protein YP_682065.1 1688342 D 375451 CDS YP_682066.1 110679059 4196974 complement(1689686..1690168) 1 NC_008209.1 thioesterase family protein 1690168 4196974 RD1_1761 Roseobacter denitrificans OCh 114 thioesterase family protein YP_682066.1 1689686 R 375451 CDS YP_682067.1 110679060 4196975 complement(1690229..1691098) 1 NC_008209.1 5,10-methylenetetrahydrofolate reductase 1691098 metF 4196975 metF Roseobacter denitrificans OCh 114 5,10-methylenetetrahydrofolate reductase YP_682067.1 1690229 R 375451 CDS YP_682068.1 110679061 4196976 1691186..1692091 1 NC_008209.1 HTH-type transcriptional regulator metR 1692091 metR 4196976 metR Roseobacter denitrificans OCh 114 HTH-type transcriptional regulator metR YP_682068.1 1691186 D 375451 CDS YP_682069.1 110679062 4196977 complement(1692268..1693125) 1 NC_008209.1 hypothetical protein 1693125 4196977 RD1_1764 Roseobacter denitrificans OCh 114 hypothetical protein YP_682069.1 1692268 R 375451 CDS YP_682070.1 110679063 4196939 complement(1693287..1693514) 1 NC_008209.1 hypothetical protein 1693514 4196939 RD1_1765 Roseobacter denitrificans OCh 114 hypothetical protein YP_682070.1 1693287 R 375451 CDS YP_682071.1 110679064 4196940 complement(1693511..1694002) 1 NC_008209.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1694002 4196940 RD1_1766 Roseobacter denitrificans OCh 114 Holliday junction resolvase-like protein YP_682071.1 1693511 R 375451 CDS YP_682072.1 110679065 4196941 complement(1693999..1695240) 1 NC_008209.1 cytochrome c-type biogenesis protein CycH 1695240 cycH 4196941 cycH Roseobacter denitrificans OCh 114 cytochrome c-type biogenesis protein CycH YP_682072.1 1693999 R 375451 CDS YP_682073.1 110679066 4196942 1695377..1696066 1 NC_008209.1 hypothetical protein 1696066 4196942 RD1_1769 Roseobacter denitrificans OCh 114 hypothetical protein YP_682073.1 1695377 D 375451 CDS YP_682074.1 110679067 4196943 complement(1695485..1695721) 1 NC_008209.1 hypothetical protein 1695721 4196943 RD1_1768 Roseobacter denitrificans OCh 114 hypothetical protein YP_682074.1 1695485 R 375451 CDS YP_682075.1 110679068 4196944 1696158..1696664 1 NC_008209.1 hypothetical protein 1696664 4196944 RD1_1770 Roseobacter denitrificans OCh 114 hypothetical protein YP_682075.1 1696158 D 375451 CDS YP_682076.1 110679069 4196945 1696669..1697103 1 NC_008209.1 hypothetical protein 1697103 4196945 RD1_1771 Roseobacter denitrificans OCh 114 hypothetical protein YP_682076.1 1696669 D 375451 CDS YP_682077.1 110679070 4196946 1697214..1697813 1 NC_008209.1 superoxide dismutase 1697813 sodB 4196946 sodB Roseobacter denitrificans OCh 114 superoxide dismutase YP_682077.1 1697214 D 375451 CDS YP_682078.1 110679071 4196947 complement(1697993..1698559) 1 NC_008209.1 decarboxylase 1698559 4196947 RD1_1773 Roseobacter denitrificans OCh 114 decarboxylase YP_682078.1 1697993 R 375451 CDS YP_682079.1 110679072 4196948 1698685..1699971 1 NC_008209.1 lysM domain-containing protein 1699971 4196948 RD1_1774 Roseobacter denitrificans OCh 114 lysM domain-containing protein YP_682079.1 1698685 D 375451 CDS YP_682080.1 110679073 4196949 1700044..1701882 1 NC_008209.1 ABC transporter ATP-binding protein 1701882 4196949 RD1_1775 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682080.1 1700044 D 375451 CDS YP_682081.1 110679074 4196950 1701949..1702641 1 NC_008209.1 hypothetical protein 1702641 4196950 RD1_1776 Roseobacter denitrificans OCh 114 hypothetical protein YP_682081.1 1701949 D 375451 CDS YP_682082.1 110679075 4196951 complement(1702694..1703149) 1 NC_008209.1 hypothetical protein 1703149 4196951 RD1_1777 Roseobacter denitrificans OCh 114 hypothetical protein YP_682082.1 1702694 R 375451 CDS YP_682083.1 110679076 4196952 complement(1703226..1707023) 1 NC_008209.1 AcrB/AcrD/AcrF family protein 1707023 4196952 RD1_1778 Roseobacter denitrificans OCh 114 AcrB/AcrD/AcrF family protein YP_682083.1 1703226 R 375451 CDS YP_682084.1 110679077 4196953 complement(1707020..1708258) 1 NC_008209.1 hypothetical protein 1708258 4196953 RD1_1779 Roseobacter denitrificans OCh 114 hypothetical protein YP_682084.1 1707020 R 375451 CDS YP_682085.1 110679078 4196954 1708380..1709150 1 NC_008209.1 hypothetical protein 1709150 4196954 RD1_1780 Roseobacter denitrificans OCh 114 hypothetical protein YP_682085.1 1708380 D 375451 CDS YP_682086.1 110679079 4196955 1709222..1710565 1 NC_008209.1 PQQ repeat-containing protein 1710565 4196955 RD1_1781 Roseobacter denitrificans OCh 114 PQQ repeat-containing protein YP_682086.1 1709222 D 375451 CDS YP_682087.1 110679080 4196956 1710618..1712096 1 NC_008209.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1712096 engA 4196956 engA Roseobacter denitrificans OCh 114 GTP-binding protein EngA YP_682087.1 1710618 D 375451 CDS YP_682088.1 110679081 4196957 complement(1712196..1712915) 1 NC_008209.1 hypothetical protein 1712915 4196957 RD1_1784 Roseobacter denitrificans OCh 114 hypothetical protein YP_682088.1 1712196 R 375451 CDS YP_682089.1 110679082 4196958 1713028..1714158 1 NC_008209.1 hypothetical protein 1714158 4196958 RD1_1785 Roseobacter denitrificans OCh 114 hypothetical protein YP_682089.1 1713028 D 375451 CDS YP_682090.1 110679083 4196920 1714229..1714720 1 NC_008209.1 hypothetical protein 1714720 4196920 RD1_1786 Roseobacter denitrificans OCh 114 hypothetical protein YP_682090.1 1714229 D 375451 CDS YP_682091.1 110679084 4196921 1714876..1716309 1 NC_008209.1 glutamate dehydrogenase 1716309 gill 4196921 gill Roseobacter denitrificans OCh 114 glutamate dehydrogenase YP_682091.1 1714876 D 375451 CDS YP_682092.1 110679085 4196922 1716627..1717880 1 NC_008209.1 sarcosine oxidase, beta subunit 1717880 soxB 4196922 soxB Roseobacter denitrificans OCh 114 sarcosine oxidase, beta subunit YP_682092.1 1716627 D 375451 CDS YP_682093.1 110679086 4196923 1717921..1718190 1 NC_008209.1 sarcosine oxidase subunit delta 1718190 soxD 4196923 soxD Roseobacter denitrificans OCh 114 sarcosine oxidase subunit delta YP_682093.1 1717921 D 375451 CDS YP_682094.1 110679087 4196924 1718187..1721114 1 NC_008209.1 sarcosine oxidase, alpha subunit 1721114 soxA 4196924 soxA Roseobacter denitrificans OCh 114 sarcosine oxidase, alpha subunit YP_682094.1 1718187 D 375451 CDS YP_682095.1 110679088 4196925 1721107..1721652 1 NC_008209.1 sarcosine oxidase, gamma subunit 1721652 soxG 4196925 soxG Roseobacter denitrificans OCh 114 sarcosine oxidase, gamma subunit YP_682095.1 1721107 D 375451 CDS YP_682096.1 110679089 4196926 1721685..1721987 1 NC_008209.1 hypothetical protein 1721987 4196926 RD1_1792 Roseobacter denitrificans OCh 114 hypothetical protein YP_682096.1 1721685 D 375451 CDS YP_682097.1 110679090 4196927 1722072..1724027 1 NC_008209.1 synthesizes RNA primers at the replication forks; DNA primase 1724027 dnaG 4196927 dnaG Roseobacter denitrificans OCh 114 DNA primase YP_682097.1 1722072 D 375451 CDS YP_682098.1 110679091 4196928 1724150..1726135 1 NC_008209.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1726135 rpoD 4196928 rpoD Roseobacter denitrificans OCh 114 RNA polymerase sigma factor RpoD YP_682098.1 1724150 D 375451 CDS YP_682099.1 110679092 4196929 1726859..1727143 1 NC_008209.1 hypothetical protein 1727143 4196929 RD1_1795 Roseobacter denitrificans OCh 114 hypothetical protein YP_682099.1 1726859 D 375451 CDS YP_682100.1 110679093 4196930 1727218..1727634 1 NC_008209.1 hypothetical protein 1727634 4196930 RD1_1796 Roseobacter denitrificans OCh 114 hypothetical protein YP_682100.1 1727218 D 375451 CDS YP_682101.1 110679094 4196931 1727668..1728090 1 NC_008209.1 hypothetical protein 1728090 4196931 RD1_1797 Roseobacter denitrificans OCh 114 hypothetical protein YP_682101.1 1727668 D 375451 CDS YP_682102.1 110679095 4196932 1728225..1728692 1 NC_008209.1 transcriptional regulator NrdR 1728692 nrdR 4196932 nrdR Roseobacter denitrificans OCh 114 transcriptional regulator NrdR YP_682102.1 1728225 D 375451 CDS YP_682103.1 110679096 4196933 1728689..1729786 1 NC_008209.1 riboflavin biosynthesis protein ribD 1729786 ribD 4196933 ribD Roseobacter denitrificans OCh 114 riboflavin biosynthesis protein ribD YP_682103.1 1728689 D 375451 CDS YP_682104.1 110679097 4196934 1729930..1730523 1 NC_008209.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1730523 ribE 4196934 ribE Roseobacter denitrificans OCh 114 riboflavin synthase subunit alpha YP_682104.1 1729930 D 375451 CDS YP_682105.1 110679098 4196935 1730594..1731718 1 NC_008209.1 3,4-dihydroxy-2-butanone 4-phosphate synthase 1731718 ribB 4196935 ribB Roseobacter denitrificans OCh 114 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_682105.1 1730594 D 375451 CDS YP_682106.1 110679099 4196936 1731722..1732273 1 NC_008209.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1732273 ribH 4196936 ribH Roseobacter denitrificans OCh 114 6,7-dimethyl-8-ribityllumazine synthase YP_682106.1 1731722 D 375451 CDS YP_682107.1 110679100 4196937 1732315..1732752 1 NC_008209.1 N utilization substance protein B-like protein 1732752 nusB 4196937 nusB Roseobacter denitrificans OCh 114 N utilization substance protein B-like protein YP_682107.1 1732315 D 375451 CDS YP_682108.1 110679101 4196938 1732756..1733061 1 NC_008209.1 hypothetical protein 1733061 4196938 RD1_1805 Roseobacter denitrificans OCh 114 hypothetical protein YP_682108.1 1732756 D 375451 CDS YP_682109.1 110679102 4196901 1733186..1733299 1 NC_008209.1 hypothetical protein 1733299 4196901 RD1_1806 Roseobacter denitrificans OCh 114 hypothetical protein YP_682109.1 1733186 D 375451 CDS YP_682110.1 110679103 4196902 1733591..1734049 1 NC_008209.1 hypothetical protein 1734049 4196902 RD1_1807 Roseobacter denitrificans OCh 114 hypothetical protein YP_682110.1 1733591 D 375451 CDS YP_682111.1 110679104 4196903 complement(1734061..1734246) 1 NC_008209.1 hypothetical protein 1734246 4196903 RD1_1808 Roseobacter denitrificans OCh 114 hypothetical protein YP_682111.1 1734061 R 375451 CDS YP_682112.1 110679105 4196904 1734326..1734808 1 NC_008209.1 acetyltransferase 1734808 4196904 RD1_1809 Roseobacter denitrificans OCh 114 acetyltransferase YP_682112.1 1734326 D 375451 CDS YP_682113.1 110679106 4196906 1735025..1736038 1 NC_008209.1 AraC family transcriptional regulator 1736038 4196906 RD1_1811 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_682113.1 1735025 D 375451 CDS YP_682114.1 110679107 4196907 complement(1736049..1736357) 1 NC_008209.1 hypothetical protein 1736357 4196907 RD1_1812 Roseobacter denitrificans OCh 114 hypothetical protein YP_682114.1 1736049 R 375451 CDS YP_682115.1 110679108 4196908 1736356..1737384 1 NC_008209.1 ribosomal large subunit pseudouridine synthase D 1737384 rluD 4196908 rluD Roseobacter denitrificans OCh 114 ribosomal large subunit pseudouridine synthase D YP_682115.1 1736356 D 375451 CDS YP_682116.1 110679109 4196909 1737568..1738464 1 NC_008209.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1738464 rpoH 4196909 rpoH Roseobacter denitrificans OCh 114 RNA polymerase factor sigma-32 YP_682116.1 1737568 D 375451 CDS YP_682117.1 110679110 4196910 complement(1738606..1740426) 1 NC_008209.1 oligoendopeptidase F 1740426 pepF 4196910 pepF Roseobacter denitrificans OCh 114 oligoendopeptidase F YP_682117.1 1738606 R 375451 CDS YP_682118.1 110679111 4196911 1740635..1741528 1 NC_008209.1 hypothetical protein 1741528 4196911 RD1_1816 Roseobacter denitrificans OCh 114 hypothetical protein YP_682118.1 1740635 D 375451 CDS YP_682119.1 110679112 4196912 complement(1741635..1743233) 1 NC_008209.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 1743233 dnlI 4196912 dnlI Roseobacter denitrificans OCh 114 ATP-dependent DNA ligase YP_682119.1 1741635 R 375451 CDS YP_682120.1 110679113 4196913 complement(1743230..1744243) 1 NC_008209.1 hypothetical protein 1744243 4196913 RD1_1818 Roseobacter denitrificans OCh 114 hypothetical protein YP_682120.1 1743230 R 375451 CDS YP_682121.1 110679114 4196914 complement(1744282..1745160) 1 NC_008209.1 lysophospholipase 1745160 pldB 4196914 pldB Roseobacter denitrificans OCh 114 lysophospholipase YP_682121.1 1744282 R 375451 CDS YP_682122.1 110679115 4196915 complement(1745229..1745519) 1 NC_008209.1 hypothetical protein 1745519 4196915 RD1_1820 Roseobacter denitrificans OCh 114 hypothetical protein YP_682122.1 1745229 R 375451 CDS YP_682123.1 110679116 4196916 1745561..1746151 1 NC_008209.1 hypothetical protein 1746151 4196916 RD1_1821 Roseobacter denitrificans OCh 114 hypothetical protein YP_682123.1 1745561 D 375451 CDS YP_682124.1 110679117 4196917 1746176..1749010 1 NC_008209.1 helicase 1749010 4196917 RD1_1822 Roseobacter denitrificans OCh 114 helicase YP_682124.1 1746176 D 375451 CDS YP_682125.1 110679118 4196918 1749011..1749388 1 NC_008209.1 heat shock protein 1749388 hslR 4196918 hslR Roseobacter denitrificans OCh 114 heat shock protein YP_682125.1 1749011 D 375451 CDS YP_682126.1 110679119 4196919 1749442..1749780 1 NC_008209.1 ferredoxin II 1749780 fdxA 4196919 fdxA Roseobacter denitrificans OCh 114 ferredoxin II YP_682126.1 1749442 D 375451 CDS YP_682127.1 110679120 4196882 1750054..1750566 1 NC_008209.1 CarD family transcriptional regulator 1750566 4196882 RD1_1825 Roseobacter denitrificans OCh 114 CarD family transcriptional regulator YP_682127.1 1750054 D 375451 CDS YP_682128.1 110679121 4196883 complement(1750617..1751366) 1 NC_008209.1 cobalamin 5'-phosphate synthase 1751366 cobS 4196883 cobS Roseobacter denitrificans OCh 114 cobalamin 5'-phosphate synthase YP_682128.1 1750617 R 375451 CDS YP_682129.1 110679122 4196884 1751460..1752473 1 NC_008209.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1752473 cobT 4196884 cobT Roseobacter denitrificans OCh 114 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_682129.1 1751460 D 375451 CDS YP_682130.1 110679123 4196885 complement(1752488..1754371) 1 NC_008209.1 glutathione-regulated potassium-efflux system protein 1754371 kefC 4196885 kefC Roseobacter denitrificans OCh 114 glutathione-regulated potassium-efflux system protein YP_682130.1 1752488 R 375451 CDS YP_682131.1 110679124 4196886 complement(1754394..1754849) 1 NC_008209.1 AsnC family transcriptional regulator 1754849 4196886 RD1_1829 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_682131.1 1754394 R 375451 CDS YP_682132.1 110679125 4196887 1755006..1756100 1 NC_008209.1 4-hydroxyphenylpyruvate dioxygenase 1756100 hppD 4196887 hppD Roseobacter denitrificans OCh 114 4-hydroxyphenylpyruvate dioxygenase YP_682132.1 1755006 D 375451 CDS YP_682133.1 110679126 4196888 complement(1756111..1758378) 1 NC_008209.1 hypothetical protein 1758378 4196888 RD1_1832 Roseobacter denitrificans OCh 114 hypothetical protein YP_682133.1 1756111 R 375451 CDS YP_682134.1 110679127 4196889 1756295..1756684 1 NC_008209.1 hypothetical protein 1756684 4196889 RD1_1831 Roseobacter denitrificans OCh 114 hypothetical protein YP_682134.1 1756295 D 375451 CDS YP_682135.1 110679128 4196890 1758487..1759185 1 NC_008209.1 hypothetical protein 1759185 4196890 RD1_1833 Roseobacter denitrificans OCh 114 hypothetical protein YP_682135.1 1758487 D 375451 CDS YP_682136.1 110679129 4196891 complement(1759240..1760538) 1 NC_008209.1 O-acetylhomoserine sulfhydrylase 1760538 metB 4196891 metB Roseobacter denitrificans OCh 114 O-acetylhomoserine sulfhydrylase YP_682136.1 1759240 R 375451 CDS YP_682137.1 110679130 4196892 1760923..1762056 1 NC_008209.1 aminotransferase 1762056 4196892 RD1_1835 Roseobacter denitrificans OCh 114 aminotransferase YP_682137.1 1760923 D 375451 CDS YP_682138.1 110679131 4196893 complement(1762093..1762983) 1 NC_008209.1 LysR family transcriptional regulator 1762983 4196893 RD1_1837 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_682138.1 1762093 R 375451 CDS YP_682139.1 110679132 4196894 1763174..1764187 1 NC_008209.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 1764187 4196894 RD1_1838 Roseobacter denitrificans OCh 114 D-cysteine desulfhydrase YP_682139.1 1763174 D 375451 CDS YP_682140.1 110679133 4196895 1764222..1765181 1 NC_008209.1 glycine betaine/L-proline ABC transporter substrate binding protein 1765181 4196895 RD1_1839 Roseobacter denitrificans OCh 114 glycine betaine/L-proline ABC transporter substrate binding protein YP_682140.1 1764222 D 375451 CDS YP_682141.1 110679134 4196896 complement(1765231..1765887) 1 NC_008209.1 hypothetical protein 1765887 4196896 RD1_1840 Roseobacter denitrificans OCh 114 hypothetical protein YP_682141.1 1765231 R 375451 CDS YP_682142.1 110679135 4196897 1766308..1767849 1 NC_008209.1 glycine betaine/L-proline transport system permease 1767849 4196897 RD1_1841 Roseobacter denitrificans OCh 114 glycine betaine/L-proline transport system permease YP_682142.1 1766308 D 375451 CDS YP_682143.1 110679136 4196898 1767846..1768589 1 NC_008209.1 hydrolase 1768589 4196898 RD1_1842 Roseobacter denitrificans OCh 114 hydrolase YP_682143.1 1767846 D 375451 CDS YP_682144.1 110679137 4196899 1768711..1768929 1 NC_008209.1 hypothetical protein 1768929 4196899 RD1_1843 Roseobacter denitrificans OCh 114 hypothetical protein YP_682144.1 1768711 D 375451 CDS YP_682145.1 110679138 4196900 complement(1769207..1769599) 1 NC_008209.1 hypothetical protein 1769599 4196900 RD1_1845 Roseobacter denitrificans OCh 114 hypothetical protein YP_682145.1 1769207 R 375451 CDS YP_682146.1 110679139 4196866 complement(1770838..1772070) 1 NC_008209.1 site-specific DNA recombinase 1772070 4196866 RD1_1848 Roseobacter denitrificans OCh 114 site-specific DNA recombinase YP_682146.1 1770838 R 375451 CDS YP_682147.1 110679140 4196867 complement(1772055..1772351) 1 NC_008209.1 hypothetical protein 1772351 4196867 RD1_1849 Roseobacter denitrificans OCh 114 hypothetical protein YP_682147.1 1772055 R 375451 CDS YP_682148.1 110679141 4196868 1772561..1773316 1 NC_008209.1 hypothetical protein 1773316 4196868 RD1_1850 Roseobacter denitrificans OCh 114 hypothetical protein YP_682148.1 1772561 D 375451 CDS YP_682149.1 110679142 4196869 1774220..1774486 1 NC_008209.1 hypothetical protein 1774486 4196869 RD1_1851 Roseobacter denitrificans OCh 114 hypothetical protein YP_682149.1 1774220 D 375451 CDS YP_682150.2 162139374 4196870 1774522..1775334 1 NC_008209.1 integrase catalytic subunit 1775334 4196870 RD1_1852 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_682150.2 1774522 D 375451 CDS YP_682151.1 110679144 4196872 1776600..1776698 1 NC_008209.1 hypothetical protein 1776698 4196872 RD1_1854 Roseobacter denitrificans OCh 114 hypothetical protein YP_682151.1 1776600 D 375451 CDS YP_682152.1 110679145 4196873 complement(1776726..1777259) 1 NC_008209.1 rrf2 family transcriptional regulator 1777259 4196873 RD1_1855 Roseobacter denitrificans OCh 114 rrf2 family transcriptional regulator YP_682152.1 1776726 R 375451 CDS YP_682153.1 110679146 4196874 1777253..1778464 1 NC_008209.1 cobalamin synthesis protein 1778464 4196874 RD1_1856 Roseobacter denitrificans OCh 114 cobalamin synthesis protein YP_682153.1 1777253 D 375451 CDS YP_682154.1 110679147 4196875 1778497..1779096 1 NC_008209.1 hypothetical protein 1779096 4196875 RD1_1857 Roseobacter denitrificans OCh 114 hypothetical protein YP_682154.1 1778497 D 375451 CDS YP_682155.1 110679148 4196876 1779093..1779359 1 NC_008209.1 hypothetical protein 1779359 4196876 RD1_1858 Roseobacter denitrificans OCh 114 hypothetical protein YP_682155.1 1779093 D 375451 CDS YP_682156.1 110679149 4196877 1779379..1780902 1 NC_008209.1 dipeptide ABC transporter substrate-binding protein 1780902 4196877 RD1_1859 Roseobacter denitrificans OCh 114 dipeptide ABC transporter substrate-binding protein YP_682156.1 1779379 D 375451 CDS YP_682157.1 110679150 4196878 complement(1781132..1781362) 1 NC_008209.1 hypothetical protein 1781362 4196878 RD1_1860 Roseobacter denitrificans OCh 114 hypothetical protein YP_682157.1 1781132 R 375451 CDS YP_682158.1 110679151 4196879 1781576..1782301 1 NC_008209.1 ABC transporter ATP-binding protein 1782301 4196879 RD1_1861 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682158.1 1781576 D 375451 CDS YP_682159.1 110679152 4196880 1782298..1783236 1 NC_008209.1 oligopeptide ABC transporter permease 1783236 4196880 RD1_1862 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter permease YP_682159.1 1782298 D 375451 CDS YP_682160.1 110679153 4196881 1783229..1784023 1 NC_008209.1 nickel transport system permease nikC 1784023 nikC 4196881 nikC Roseobacter denitrificans OCh 114 nickel transport system permease nikC YP_682160.1 1783229 D 375451 CDS YP_682161.1 110679154 4196845 1784020..1784913 1 NC_008209.1 hypothetical protein 1784913 4196845 RD1_1864 Roseobacter denitrificans OCh 114 hypothetical protein YP_682161.1 1784020 D 375451 CDS YP_682162.1 110679155 4196846 complement(1785070..1786575) 1 NC_008209.1 hypothetical protein 1786575 4196846 RD1_1865 Roseobacter denitrificans OCh 114 hypothetical protein YP_682162.1 1785070 R 375451 CDS YP_682163.1 110679156 4196847 complement(1786572..1787048) 1 NC_008209.1 hypothetical protein 1787048 4196847 RD1_1866 Roseobacter denitrificans OCh 114 hypothetical protein YP_682163.1 1786572 R 375451 CDS YP_682164.1 110679157 4196848 complement(1787099..1788088) 1 NC_008209.1 hypothetical protein 1788088 4196848 RD1_1867 Roseobacter denitrificans OCh 114 hypothetical protein YP_682164.1 1787099 R 375451 CDS YP_682165.1 110679158 4196849 1788422..1789981 1 NC_008209.1 4-coumarate--CoA ligase 1789981 4196849 RD1_1868 Roseobacter denitrificans OCh 114 4-coumarate--CoA ligase YP_682165.1 1788422 D 375451 CDS YP_682166.1 110679159 4196850 1790282..1790794 1 NC_008209.1 MarR family transcriptional regulator 1790794 mucS 4196850 mucS Roseobacter denitrificans OCh 114 MarR family transcriptional regulator YP_682166.1 1790282 D 375451 CDS YP_682167.1 110679160 4196851 complement(1790798..1791514) 1 NC_008209.1 von Willebrand factor A 1791514 4196851 RD1_1870 Roseobacter denitrificans OCh 114 von Willebrand factor A YP_682167.1 1790798 R 375451 CDS YP_682168.1 110679161 4196852 complement(1791517..1792230) 1 NC_008209.1 von Willebrand factor A 1792230 4196852 RD1_1871 Roseobacter denitrificans OCh 114 von Willebrand factor A YP_682168.1 1791517 R 375451 CDS YP_682169.1 110679162 4196853 complement(1792224..1792652) 1 NC_008209.1 lactoylglutathione lyase 1792652 gloA 4196853 gloA Roseobacter denitrificans OCh 114 lactoylglutathione lyase YP_682169.1 1792224 R 375451 CDS YP_682170.1 110679163 4196854 1792759..1792899 1 NC_008209.1 hypothetical protein 1792899 4196854 RD1_1873 Roseobacter denitrificans OCh 114 hypothetical protein YP_682170.1 1792759 D 375451 CDS YP_682171.1 110679164 4196855 1793032..1793865 1 NC_008209.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1793865 thyA 4196855 thyA Roseobacter denitrificans OCh 114 thymidylate synthase YP_682171.1 1793032 D 375451 CDS YP_682172.1 110679165 4196856 1793869..1794348 1 NC_008209.1 dihydrofolate reductase 1794348 folA 4196856 folA Roseobacter denitrificans OCh 114 dihydrofolate reductase YP_682172.1 1793869 D 375451 CDS YP_682173.1 110679166 4196857 complement(1794462..1794668) 1 NC_008209.1 cold shock family protein-related protein 1794668 y4cH 4196857 y4cH Roseobacter denitrificans OCh 114 cold shock family protein-related protein YP_682173.1 1794462 R 375451 CDS YP_682174.1 110679167 4196858 1794862..1795179 1 NC_008209.1 ArsC family protein 1795179 4196858 RD1_1877 Roseobacter denitrificans OCh 114 ArsC family protein YP_682174.1 1794862 D 375451 CDS YP_682175.1 110679168 4196859 complement(1795186..1795740) 1 NC_008209.1 DoxX subfamily protein 1795740 4196859 RD1_1878 Roseobacter denitrificans OCh 114 DoxX subfamily protein YP_682175.1 1795186 R 375451 CDS YP_682176.1 110679169 4196860 complement(1795737..1796495) 1 NC_008209.1 hypothetical protein 1796495 4196860 RD1_1879 Roseobacter denitrificans OCh 114 hypothetical protein YP_682176.1 1795737 R 375451 CDS YP_682177.1 110679170 4196861 complement(1796492..1797346) 1 NC_008209.1 hypothetical protein 1797346 4196861 RD1_1880 Roseobacter denitrificans OCh 114 hypothetical protein YP_682177.1 1796492 R 375451 CDS YP_682178.1 110679171 4196862 complement(1797428..1797730) 1 NC_008209.1 hypothetical protein 1797730 4196862 RD1_1881 Roseobacter denitrificans OCh 114 hypothetical protein YP_682178.1 1797428 R 375451 CDS YP_682179.1 110679172 4196863 1797817..1797918 1 NC_008209.1 hypothetical protein 1797918 4196863 RD1_1882 Roseobacter denitrificans OCh 114 hypothetical protein YP_682179.1 1797817 D 375451 CDS YP_682180.1 110679173 4196825 complement(1797934..1799880) 1 NC_008209.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1799880 thrS 4196825 thrS Roseobacter denitrificans OCh 114 threonyl-tRNA synthetase YP_682180.1 1797934 R 375451 CDS YP_682181.1 110679174 4196826 1800079..1800324 1 NC_008209.1 hypothetical protein 1800324 4196826 RD1_1884 Roseobacter denitrificans OCh 114 hypothetical protein YP_682181.1 1800079 D 375451 CDS YP_682182.1 110679175 4196827 1800579..1801334 1 NC_008209.1 hypothetical protein 1801334 4196827 RD1_1885 Roseobacter denitrificans OCh 114 hypothetical protein YP_682182.1 1800579 D 375451 CDS YP_682183.1 110679176 4196828 1801487..1802200 1 NC_008209.1 hydrolase 1802200 4196828 RD1_1886 Roseobacter denitrificans OCh 114 hydrolase YP_682183.1 1801487 D 375451 CDS YP_682184.1 110679177 4196829 complement(1802211..1803497) 1 NC_008209.1 polyhydroxyalkanoate depolymerase 1803497 phaZ 4196829 phaZ Roseobacter denitrificans OCh 114 polyhydroxyalkanoate depolymerase YP_682184.1 1802211 R 375451 CDS YP_682185.1 110679178 4196830 1803607..1805412 1 NC_008209.1 poly(3-hydroxyalkanoate) polymerase 1805412 phaC 4196830 phaC Roseobacter denitrificans OCh 114 poly(3-hydroxyalkanoate) polymerase YP_682185.1 1803607 D 375451 CDS YP_682186.1 110679179 4196831 1805553..1805999 1 NC_008209.1 hypothetical protein 1805999 4196831 RD1_1889 Roseobacter denitrificans OCh 114 hypothetical protein YP_682186.1 1805553 D 375451 CDS YP_682187.1 110679180 4196832 1806045..1806701 1 NC_008209.1 polyhydroxyalkanoate synthesis repressor 1806701 4196832 RD1_1890 Roseobacter denitrificans OCh 114 polyhydroxyalkanoate synthesis repressor YP_682187.1 1806045 D 375451 CDS YP_682188.1 110679181 4196833 complement(1806813..1808117) 1 NC_008209.1 oxidoreductase, FAD-binding 1808117 4196833 RD1_1891 Roseobacter denitrificans OCh 114 oxidoreductase, FAD-binding YP_682188.1 1806813 R 375451 CDS YP_682189.1 110679182 4196834 complement(1808136..1809494) 1 NC_008209.1 glutamine synthetase 1809494 4196834 RD1_1892 Roseobacter denitrificans OCh 114 glutamine synthetase YP_682189.1 1808136 R 375451 CDS YP_682190.1 110679183 4196835 complement(1809479..1810171) 1 NC_008209.1 glutamine amidotransferase 1810171 4196835 RD1_1893 Roseobacter denitrificans OCh 114 glutamine amidotransferase YP_682190.1 1809479 R 375451 CDS YP_682191.1 110679184 4196836 complement(1810175..1811509) 1 NC_008209.1 glutamine synthetase 1811509 4196836 RD1_1894 Roseobacter denitrificans OCh 114 glutamine synthetase YP_682191.1 1810175 R 375451 CDS YP_682192.1 110679185 4196837 complement(1811597..1812343) 1 NC_008209.1 histidine ABC transporter permease 1812343 hisM 4196837 hisM Roseobacter denitrificans OCh 114 histidine ABC transporter permease YP_682192.1 1811597 R 375451 CDS YP_682193.1 110679186 4196838 complement(1812400..1813236) 1 NC_008209.1 arginine/histidine-ABC transporter permease 1813236 4196838 RD1_1897 Roseobacter denitrificans OCh 114 arginine/histidine-ABC transporter permease YP_682193.1 1812400 R 375451 CDS YP_682194.1 110679187 4196839 complement(1813344..1814072) 1 NC_008209.1 ABC transporter substrate-binding protein 1814072 4196839 RD1_1898 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_682194.1 1813344 R 375451 CDS YP_682195.1 110679188 4196840 complement(1814100..1814876) 1 NC_008209.1 amino acid ABC transporter ATP-binding protein 1814876 4196840 RD1_1899 Roseobacter denitrificans OCh 114 amino acid ABC transporter ATP-binding protein YP_682195.1 1814100 R 375451 CDS YP_682196.1 110679189 4196841 complement(1814988..1815743) 1 NC_008209.1 hypothetical protein 1815743 4196841 RD1_1900 Roseobacter denitrificans OCh 114 hypothetical protein YP_682196.1 1814988 R 375451 CDS YP_682197.1 110679190 4196842 complement(1815740..1816180) 1 NC_008209.1 hypothetical protein 1816180 4196842 RD1_1901 Roseobacter denitrificans OCh 114 hypothetical protein YP_682197.1 1815740 R 375451 CDS YP_682198.1 110679191 4196843 complement(1816219..1816668) 1 NC_008209.1 hypothetical protein 1816668 4196843 RD1_1902 Roseobacter denitrificans OCh 114 hypothetical protein YP_682198.1 1816219 R 375451 CDS YP_682199.1 110679192 4196844 1816716..1816826 1 NC_008209.1 hypothetical protein 1816826 4196844 RD1_1903 Roseobacter denitrificans OCh 114 hypothetical protein YP_682199.1 1816716 D 375451 CDS YP_682200.1 110679193 4196806 complement(1816869..1817660) 1 NC_008209.1 hypothetical protein 1817660 4196806 RD1_1904 Roseobacter denitrificans OCh 114 hypothetical protein YP_682200.1 1816869 R 375451 CDS YP_682201.1 110679194 4196807 complement(1817789..1818547) 1 NC_008209.1 hypothetical protein 1818547 4196807 RD1_1905 Roseobacter denitrificans OCh 114 hypothetical protein YP_682201.1 1817789 R 375451 CDS YP_682202.1 110679195 4196808 complement(1818752..1820395) 1 NC_008209.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1820395 pyrG 4196808 pyrG Roseobacter denitrificans OCh 114 CTP synthetase YP_682202.1 1818752 R 375451 CDS YP_682203.1 110679196 4196809 complement(1820573..1820938) 1 NC_008209.1 preprotein translocase subunit SecG 1820938 secG 4196809 secG Roseobacter denitrificans OCh 114 preprotein translocase subunit SecG YP_682203.1 1820573 R 375451 CDS YP_682204.1 110679197 4196810 1821202..1821834 1 NC_008209.1 nitrile hydratase subunit alpha 1821834 nthA 4196810 nthA Roseobacter denitrificans OCh 114 nitrile hydratase subunit alpha YP_682204.1 1821202 D 375451 CDS YP_682205.1 110679198 4196811 1821831..1822505 1 NC_008209.1 nitrile hydratase subunit beta 1822505 nthB 4196811 nthB Roseobacter denitrificans OCh 114 nitrile hydratase subunit beta YP_682205.1 1821831 D 375451 CDS YP_682206.1 110679199 4196812 1822475..1822816 1 NC_008209.1 hypothetical protein 1822816 4196812 RD1_1910 Roseobacter denitrificans OCh 114 hypothetical protein YP_682206.1 1822475 D 375451 CDS YP_682207.1 110679200 4196813 complement(1822841..1823203) 1 NC_008209.1 hypothetical protein 1823203 4196813 RD1_1911 Roseobacter denitrificans OCh 114 hypothetical protein YP_682207.1 1822841 R 375451 CDS YP_682208.1 110679201 4196814 1823341..1824705 1 NC_008209.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1824705 purA 4196814 purA Roseobacter denitrificans OCh 114 adenylosuccinate synthetase YP_682208.1 1823341 D 375451 CDS YP_682209.1 110679202 4196815 1824717..1824941 1 NC_008209.1 hypothetical protein 1824941 4196815 RD1_1913 Roseobacter denitrificans OCh 114 hypothetical protein YP_682209.1 1824717 D 375451 CDS YP_682210.1 110679203 4196816 complement(1824959..1826602) 1 NC_008209.1 lipoprotein 1826602 4196816 RD1_1914 Roseobacter denitrificans OCh 114 lipoprotein YP_682210.1 1824959 R 375451 CDS YP_682211.1 110679204 4196817 1826741..1827451 1 NC_008209.1 thiamine pyrophosphokinase 1827451 thiN 4196817 thiN Roseobacter denitrificans OCh 114 thiamine pyrophosphokinase YP_682211.1 1826741 D 375451 CDS YP_682212.1 110679205 4196818 complement(1827351..1828286) 1 NC_008209.1 hypothetical protein 1828286 4196818 RD1_1916 Roseobacter denitrificans OCh 114 hypothetical protein YP_682212.1 1827351 R 375451 CDS YP_682213.1 110679206 4196819 complement(1828342..1829718) 1 NC_008209.1 L-serine ammonia-lyase 1829718 sdaA 4196819 sdaA Roseobacter denitrificans OCh 114 L-serine ammonia-lyase YP_682213.1 1828342 R 375451 CDS YP_682214.1 110679207 4196820 1830290..1831078 1 NC_008209.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1831078 rpiA 4196820 rpiA Roseobacter denitrificans OCh 114 ribose-5-phosphate isomerase A YP_682214.1 1830290 D 375451 CDS YP_682215.1 110679208 4196821 1831174..1832628 1 NC_008209.1 glutathione reductase 1832628 gor 4196821 gor Roseobacter denitrificans OCh 114 glutathione reductase YP_682215.1 1831174 D 375451 CDS YP_682216.1 110679209 4196822 1832702..1833865 1 NC_008209.1 HflK protein 1833865 4196822 RD1_1920 Roseobacter denitrificans OCh 114 HflK protein YP_682216.1 1832702 D 375451 CDS YP_682217.1 110679210 4196823 1833865..1834764 1 NC_008209.1 HflC protein 1834764 hflC 4196823 hflC Roseobacter denitrificans OCh 114 HflC protein YP_682217.1 1833865 D 375451 CDS YP_682218.1 110679211 4196824 1834761..1834958 1 NC_008209.1 hypothetical protein 1834958 4196824 RD1_1922 Roseobacter denitrificans OCh 114 hypothetical protein YP_682218.1 1834761 D 375451 CDS YP_682219.1 110679212 4196786 1835107..1836570 1 NC_008209.1 serine protease DO-like precursor 1836570 degP 4196786 degP Roseobacter denitrificans OCh 114 serine protease DO-like precursor YP_682219.1 1835107 D 375451 CDS YP_682220.1 110679213 4196787 complement(1836635..1837030) 1 NC_008209.1 DNA polymerase III subunit alpha 1837030 dnaE2 4196787 dnaE2 Roseobacter denitrificans OCh 114 DNA polymerase III subunit alpha YP_682220.1 1836635 R 375451 CDS YP_682221.1 110679214 4196788 1837155..1837478 1 NC_008209.1 ferredoxin VI 1837478 fdx 4196788 fdx Roseobacter denitrificans OCh 114 ferredoxin VI YP_682221.1 1837155 D 375451 CDS YP_682222.1 110679215 4196789 1837478..1838224 1 NC_008209.1 hypothetical protein 1838224 4196789 RD1_1926 Roseobacter denitrificans OCh 114 hypothetical protein YP_682222.1 1837478 D 375451 CDS YP_682223.1 110679216 4196790 complement(1838325..1839590) 1 NC_008209.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1839590 purD 4196790 purD Roseobacter denitrificans OCh 114 phosphoribosylamine--glycine ligase YP_682223.1 1838325 R 375451 CDS YP_682224.1 110679217 4196791 1839670..1841211 1 NC_008209.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1841211 xseA 4196791 xseA Roseobacter denitrificans OCh 114 exodeoxyribonuclease VII large subunit YP_682224.1 1839670 D 375451 CDS YP_682225.1 110679218 4196792 complement(1841318..1841734) 1 NC_008209.1 hypothetical protein 1841734 4196792 RD1_1930 Roseobacter denitrificans OCh 114 hypothetical protein YP_682225.1 1841318 R 375451 CDS YP_682226.1 110679219 4196793 1841946..1842149 1 NC_008209.1 hypothetical protein 1842149 4196793 RD1_1931 Roseobacter denitrificans OCh 114 hypothetical protein YP_682226.1 1841946 D 375451 CDS YP_682227.1 110679220 4196794 1842164..1843702 1 NC_008209.1 signal recognition particle-docking protein FtsY 1843702 ftsY 4196794 ftsY Roseobacter denitrificans OCh 114 signal recognition particle-docking protein FtsY YP_682227.1 1842164 D 375451 CDS YP_682228.1 110679221 4196795 1843773..1844681 1 NC_008209.1 hypothetical protein 1844681 4196795 RD1_1933 Roseobacter denitrificans OCh 114 hypothetical protein YP_682228.1 1843773 D 375451 CDS YP_682229.1 110679222 4196796 1844691..1845305 1 NC_008209.1 intracellular septation protein 1845305 ispZ 4196796 ispZ Roseobacter denitrificans OCh 114 intracellular septation protein YP_682229.1 1844691 D 375451 CDS YP_682230.1 110679223 4196797 complement(1845302..1845997) 1 NC_008209.1 cyclic nucleotide-binding domain-containing protein 1845997 4196797 RD1_1935 Roseobacter denitrificans OCh 114 cyclic nucleotide-binding domain-containing protein YP_682230.1 1845302 R 375451 CDS YP_682231.1 110679224 4196798 complement(1846137..1846841) 1 NC_008209.1 glutathione S-transferase 1846841 gst 4196798 gst Roseobacter denitrificans OCh 114 glutathione S-transferase YP_682231.1 1846137 R 375451 CDS YP_682232.1 110679225 4196799 complement(1846825..1847817) 1 NC_008209.1 hypothetical protein 1847817 4196799 RD1_1938 Roseobacter denitrificans OCh 114 hypothetical protein YP_682232.1 1846825 R 375451 CDS YP_682233.1 110679226 4196800 1848071..1849252 1 NC_008209.1 O-succinylhomoserine sulfhydrylase 1849252 metZ 4196800 metZ Roseobacter denitrificans OCh 114 O-succinylhomoserine sulfhydrylase YP_682233.1 1848071 D 375451 CDS YP_682234.1 110679227 4196801 complement(1849175..1849270) 1 NC_008209.1 hypothetical protein 1849270 4196801 RD1_1940 Roseobacter denitrificans OCh 114 hypothetical protein YP_682234.1 1849175 R 375451 CDS YP_682235.1 110679228 4196802 1849379..1850518 1 NC_008209.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 1850518 4196802 RD1_1941 Roseobacter denitrificans OCh 114 GTP cyclohydrolase YP_682235.1 1849379 D 375451 CDS YP_682236.1 110679229 4196803 1850634..1852124 1 NC_008209.1 Trk system potassium uptake protein 1852124 trkH-1 4196803 trkH-1 Roseobacter denitrificans OCh 114 Trk system potassium uptake protein YP_682236.1 1850634 D 375451 CDS YP_682237.1 110679230 4196804 1852126..1853718 1 NC_008209.1 acetohydroxy acid synthase large subunit 1853718 ilvB 4196804 ilvB Roseobacter denitrificans OCh 114 acetohydroxy acid synthase large subunit YP_682237.1 1852126 D 375451 CDS YP_682238.1 110679231 4196805 complement(1853729..1855501) 1 NC_008209.1 peptidoglycan binding domain-containing protein 1855501 4196805 RD1_1944 Roseobacter denitrificans OCh 114 peptidoglycan binding domain-containing protein YP_682238.1 1853729 R 375451 CDS YP_682239.1 110679232 4196767 1855659..1856600 1 NC_008209.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1856600 glyQ 4196767 glyQ Roseobacter denitrificans OCh 114 glycyl-tRNA synthetase subunit alpha YP_682239.1 1855659 D 375451 CDS YP_682240.1 110679233 4196768 1856597..1857118 1 NC_008209.1 hypothetical protein 1857118 4196768 RD1_1946 Roseobacter denitrificans OCh 114 hypothetical protein YP_682240.1 1856597 D 375451 CDS YP_682241.1 110679234 4196769 1857118..1859304 1 NC_008209.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1859304 glyS 4196769 glyS Roseobacter denitrificans OCh 114 glycyl-tRNA synthetase subunit beta YP_682241.1 1857118 D 375451 CDS YP_682242.1 110679235 4196770 1859397..1861934 1 NC_008209.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1861934 ppdK 4196770 ppdK Roseobacter denitrificans OCh 114 pyruvate phosphate dikinase YP_682242.1 1859397 D 375451 CDS YP_682243.1 110679236 4196771 1862088..1862711 1 NC_008209.1 cell wall hydrolase domain-containing protein 1862711 4196771 RD1_1949 Roseobacter denitrificans OCh 114 cell wall hydrolase domain-containing protein YP_682243.1 1862088 D 375451 CDS YP_682244.1 110679237 4196772 1862805..1863728 1 NC_008209.1 dihydroneopterin aldolase 1863728 folB 4196772 folB Roseobacter denitrificans OCh 114 dihydroneopterin aldolase YP_682244.1 1862805 D 375451 CDS YP_682245.1 110679238 4196773 1863920..1864744 1 NC_008209.1 dihydropteroate synthase 1864744 folP 4196773 folP Roseobacter denitrificans OCh 114 dihydropteroate synthase YP_682245.1 1863920 D 375451 CDS YP_682246.1 110679239 4196774 1864737..1866086 1 NC_008209.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1866086 glmM 4196774 glmM Roseobacter denitrificans OCh 114 phosphoglucosamine mutase YP_682246.1 1864737 D 375451 CDS YP_682247.1 110679240 4196775 complement(1866288..1867208) 1 NC_008209.1 hypothetical protein 1867208 4196775 RD1_1953 Roseobacter denitrificans OCh 114 hypothetical protein YP_682247.1 1866288 R 375451 CDS YP_682248.1 110679241 4196776 complement(1867283..1868305) 1 NC_008209.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1868305 ilvC 4196776 ilvC Roseobacter denitrificans OCh 114 ketol-acid reductoisomerase YP_682248.1 1867283 R 375451 CDS YP_682249.1 110679242 4196777 1868443..1868898 1 NC_008209.1 AsnC family transcriptional regulator 1868898 4196777 RD1_1955 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_682249.1 1868443 D 375451 CDS YP_682250.1 110679243 4196778 1868895..1869350 1 NC_008209.1 AsnC family transcriptional regulator 1869350 4196778 RD1_1956 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_682250.1 1868895 D 375451 CDS YP_682251.1 110679244 4196779 1869449..1870576 1 NC_008209.1 aminotransferase family protein 1870576 4196779 RD1_1957 Roseobacter denitrificans OCh 114 aminotransferase family protein YP_682251.1 1869449 D 375451 CDS YP_682252.1 110679245 4196780 complement(1870569..1871768) 1 NC_008209.1 2-octaprenyl-6-methoxyphenyl hydroxylase 1871768 4196780 RD1_1958 Roseobacter denitrificans OCh 114 2-octaprenyl-6-methoxyphenyl hydroxylase YP_682252.1 1870569 R 375451 CDS YP_682253.1 110679246 4196781 complement(1871830..1872078) 1 NC_008209.1 hypothetical protein 1872078 4196781 RD1_1959 Roseobacter denitrificans OCh 114 hypothetical protein YP_682253.1 1871830 R 375451 CDS YP_682254.1 110679247 4196782 complement(1872159..1872803) 1 NC_008209.1 pyrimidine 5'-nucleotidase 1872803 4196782 RD1_1960 Roseobacter denitrificans OCh 114 pyrimidine 5'-nucleotidase YP_682254.1 1872159 R 375451 CDS YP_682255.1 110679248 4196783 1872856..1873551 1 NC_008209.1 GntR family transcriptional regulator 1873551 4196783 RD1_1961 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_682255.1 1872856 D 375451 CDS YP_682256.1 110679249 4196784 complement(1873650..1875557) 1 NC_008209.1 glycosyl transferase family protein 1875557 4196784 RD1_1962 Roseobacter denitrificans OCh 114 glycosyl transferase family protein YP_682256.1 1873650 R 375451 CDS YP_682257.1 110679250 4196785 complement(1875663..1876823) 1 NC_008209.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1876823 carA 4196785 carA Roseobacter denitrificans OCh 114 carbamoyl phosphate synthase small subunit YP_682257.1 1875663 R 375451 CDS YP_682258.1 110679251 4196749 1877051..1877509 1 NC_008209.1 GatB/Yqey family protein 1877509 4196749 RD1_1964 Roseobacter denitrificans OCh 114 GatB/Yqey family protein YP_682258.1 1877051 D 375451 CDS YP_682259.1 110679252 4196750 1877778..1878497 1 NC_008209.1 hypothetical protein 1878497 4196750 RD1_1965 Roseobacter denitrificans OCh 114 hypothetical protein YP_682259.1 1877778 D 375451 CDS YP_682260.1 110679253 4196751 complement(1878556..1879038) 1 NC_008209.1 hypothetical protein 1879038 4196751 RD1_1966 Roseobacter denitrificans OCh 114 hypothetical protein YP_682260.1 1878556 R 375451 CDS YP_682261.1 110679254 4196752 complement(1879336..1881006) 1 NC_008209.1 cytochrome c oxidase subunit I 1881006 ctaD 4196752 ctaD Roseobacter denitrificans OCh 114 cytochrome c oxidase subunit I YP_682261.1 1879336 R 375451 CDS YP_682262.1 110679255 4196753 1881302..1881568 1 NC_008209.1 sensory box protein 1881568 4196753 RD1_1968 Roseobacter denitrificans OCh 114 sensory box protein YP_682262.1 1881302 D 375451 CDS YP_682263.1 110679256 4196754 1881543..1881857 1 NC_008209.1 sensory box protein 1881857 4196754 RD1_1969 Roseobacter denitrificans OCh 114 sensory box protein YP_682263.1 1881543 D 375451 CDS YP_682264.1 110679257 4196755 complement(1881912..1882664) 1 NC_008209.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 1882664 lipB 4196755 lipB Roseobacter denitrificans OCh 114 lipoyltransferase YP_682264.1 1881912 R 375451 CDS YP_682265.1 110679258 4196758 1883254..1885179 1 NC_008209.1 ABC transporter ATP-binding protein 1885179 4196758 RD1_1973 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682265.1 1883254 D 375451 CDS YP_682266.1 110679259 4196759 1885294..1887177 1 NC_008209.1 activates fatty acids by binding to coenzyme A; AMP-binding protein 1887177 lcfA 4196759 lcfA Roseobacter denitrificans OCh 114 AMP-binding protein YP_682266.1 1885294 D 375451 CDS YP_682267.1 110679260 4196760 complement(1887222..1888058) 1 NC_008209.1 hypothetical protein 1888058 4196760 RD1_1975 Roseobacter denitrificans OCh 114 hypothetical protein YP_682267.1 1887222 R 375451 CDS YP_682268.1 110679261 4196761 complement(1888202..1889839) 1 NC_008209.1 ABC transporter ATP-binding protein 1889839 4196761 RD1_1976 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682268.1 1888202 R 375451 CDS YP_682269.1 110679262 4196762 complement(1889836..1890648) 1 NC_008209.1 ABC transporter permease 1890648 4196762 RD1_1977 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682269.1 1889836 R 375451 CDS YP_682270.1 110679263 4196763 complement(1890645..1891601) 1 NC_008209.1 ABC transporter permease 1891601 4196763 RD1_1978 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682270.1 1890645 R 375451 CDS YP_682271.1 110679264 4196764 complement(1891615..1893210) 1 NC_008209.1 ABC transporter substrate-binding protein 1893210 4196764 RD1_1979 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_682271.1 1891615 R 375451 CDS YP_682272.1 110679265 4196765 complement(1893328..1895319) 1 NC_008209.1 X-Pro dipeptidyl-peptidase 1895319 4196765 RD1_1980 Roseobacter denitrificans OCh 114 X-Pro dipeptidyl-peptidase YP_682272.1 1893328 R 375451 CDS YP_682273.1 110679266 4196766 complement(1895373..1896416) 1 NC_008209.1 hydroxypyruvate reductase 1896416 ttuD 4196766 ttuD Roseobacter denitrificans OCh 114 hydroxypyruvate reductase YP_682273.1 1895373 R 375451 CDS YP_682274.1 110679267 4196730 complement(1896516..1896962) 1 NC_008209.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1896962 4196730 RD1_1982 Roseobacter denitrificans OCh 114 D-tyrosyl-tRNA(Tyr) deacylase YP_682274.1 1896516 R 375451 CDS YP_682275.1 110679268 4196731 complement(1897006..1898112) 1 NC_008209.1 hypothetical protein 1898112 4196731 RD1_1984 Roseobacter denitrificans OCh 114 hypothetical protein YP_682275.1 1897006 R 375451 CDS YP_682276.1 110679269 4196732 complement(1898109..1898534) 1 NC_008209.1 hypothetical protein 1898534 4196732 RD1_1985 Roseobacter denitrificans OCh 114 hypothetical protein YP_682276.1 1898109 R 375451 CDS YP_682277.1 110679270 4196733 complement(1898622..1899758) 1 NC_008209.1 hypothetical protein 1899758 4196733 RD1_1986 Roseobacter denitrificans OCh 114 hypothetical protein YP_682277.1 1898622 R 375451 CDS YP_682278.1 110679271 4196734 complement(1899786..1900730) 1 NC_008209.1 lipoprotein 1900730 4196734 RD1_1987 Roseobacter denitrificans OCh 114 lipoprotein YP_682278.1 1899786 R 375451 CDS YP_682279.1 110679272 4196735 complement(1900737..1901933) 1 NC_008209.1 tellurite resistance protein TelA 1901933 telA 4196735 telA Roseobacter denitrificans OCh 114 tellurite resistance protein TelA YP_682279.1 1900737 R 375451 CDS YP_682280.1 110679273 4196736 complement(1901967..1902851) 1 NC_008209.1 hypothetical protein 1902851 4196736 RD1_1990 Roseobacter denitrificans OCh 114 hypothetical protein YP_682280.1 1901967 R 375451 CDS YP_682281.1 110679274 4196737 complement(1902854..1902970) 1 NC_008209.1 hypothetical protein 1902970 4196737 RD1_1991 Roseobacter denitrificans OCh 114 hypothetical protein YP_682281.1 1902854 R 375451 CDS YP_682282.1 110679275 4196738 complement(1903112..1903969) 1 NC_008209.1 RNA pseudouridylate synthase family protein 1903969 4196738 RD1_1992 Roseobacter denitrificans OCh 114 RNA pseudouridylate synthase family protein YP_682282.1 1903112 R 375451 CDS YP_682283.1 110679276 4196739 1904015..1904482 1 NC_008209.1 cytidine and deoxycytidylate deaminase family protein 1904482 4196739 RD1_1993 Roseobacter denitrificans OCh 114 cytidine and deoxycytidylate deaminase family protein YP_682283.1 1904015 D 375451 CDS YP_682284.1 110679277 4196740 complement(1904490..1905179) 1 NC_008209.1 metallo-beta-lactamase family protein 1905179 4196740 RD1_1994 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_682284.1 1904490 R 375451 CDS YP_682285.1 110679278 4196741 1905278..1905937 1 NC_008209.1 hypothetical protein 1905937 4196741 RD1_1995 Roseobacter denitrificans OCh 114 hypothetical protein YP_682285.1 1905278 D 375451 CDS YP_682286.1 110679279 4196742 complement(1905903..1905998) 1 NC_008209.1 hypothetical protein 1905998 4196742 RD1_1996 Roseobacter denitrificans OCh 114 hypothetical protein YP_682286.1 1905903 R 375451 CDS YP_682287.1 110679280 4196743 complement(1906031..1906285) 1 NC_008209.1 ribosomal protein L33-related protein 1906285 4196743 RD1_1997 Roseobacter denitrificans OCh 114 ribosomal protein L33-related protein YP_682287.1 1906031 R 375451 CDS YP_682288.1 110679281 4196744 complement(1906800..1907474) 1 NC_008209.1 N-acetylmuramoyl-L-alanine amidase 1907474 4196744 RD1_1998 Roseobacter denitrificans OCh 114 N-acetylmuramoyl-L-alanine amidase YP_682288.1 1906800 R 375451 CDS YP_682289.1 110679282 4196745 complement(1907435..1908127) 1 NC_008209.1 hypothetical protein 1908127 4196745 RD1_1999 Roseobacter denitrificans OCh 114 hypothetical protein YP_682289.1 1907435 R 375451 CDS YP_682290.1 110679283 4196746 complement(1908170..1909657) 1 NC_008209.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1909657 gatA 4196746 gatA Roseobacter denitrificans OCh 114 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_682290.1 1908170 R 375451 CDS YP_682291.1 110679284 4196747 complement(1909657..1909944) 1 NC_008209.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1909944 gatC 4196747 gatC Roseobacter denitrificans OCh 114 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_682291.1 1909657 R 375451 CDS YP_682292.1 110679285 4196748 complement(1910260..1910997) 1 NC_008209.1 hypothetical protein 1910997 4196748 RD1_2002 Roseobacter denitrificans OCh 114 hypothetical protein YP_682292.1 1910260 R 375451 CDS YP_682293.1 110679286 4196710 complement(1911173..1911433) 1 NC_008209.1 hypothetical protein 1911433 4196710 RD1_2003 Roseobacter denitrificans OCh 114 hypothetical protein YP_682293.1 1911173 R 375451 CDS YP_682294.1 110679287 4196711 1911511..1912386 1 NC_008209.1 LysR family transcriptional regulator 1912386 4196711 RD1_2004 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_682294.1 1911511 D 375451 CDS YP_682295.1 110679288 4196712 1912867..1913244 1 NC_008209.1 Cro/CI family transcriptional regulator 1913244 phrR 4196712 phrR Roseobacter denitrificans OCh 114 Cro/CI family transcriptional regulator YP_682295.1 1912867 D 375451 CDS YP_682296.1 110679289 4196713 1913306..1914130 1 NC_008209.1 inositol monophosphatase 1914130 4196713 RD1_2006 Roseobacter denitrificans OCh 114 inositol monophosphatase YP_682296.1 1913306 D 375451 CDS YP_682297.1 110679290 4196714 1914127..1915467 1 NC_008209.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 1915467 atzB 4196714 atzB Roseobacter denitrificans OCh 114 hydroxydechloroatrazine ethylaminohydrolase YP_682297.1 1914127 D 375451 CDS YP_682298.1 110679291 4196715 complement(1915518..1916825) 1 NC_008209.1 Catalyzes the deamination of guanine; guanine deaminase 1916825 guaD 4196715 guaD Roseobacter denitrificans OCh 114 guanine deaminase YP_682298.1 1915518 R 375451 CDS YP_682299.1 110679292 4196716 1916933..1918324 1 NC_008209.1 magnesium transporter 1918324 mgtE 4196716 mgtE Roseobacter denitrificans OCh 114 magnesium transporter YP_682299.1 1916933 D 375451 CDS YP_682300.1 110679293 4196717 1918321..1918893 1 NC_008209.1 5-formyltetrahydrofolate cyclo-ligase 1918893 4196717 RD1_2010 Roseobacter denitrificans OCh 114 5-formyltetrahydrofolate cyclo-ligase YP_682300.1 1918321 D 375451 CDS YP_682301.1 110679294 4196718 1919056..1919868 1 NC_008209.1 hypothetical protein 1919868 4196718 RD1_2012 Roseobacter denitrificans OCh 114 hypothetical protein YP_682301.1 1919056 D 375451 CDS YP_682302.1 110679295 4196719 1919865..1920770 1 NC_008209.1 hypothetical protein 1920770 4196719 RD1_2013 Roseobacter denitrificans OCh 114 hypothetical protein YP_682302.1 1919865 D 375451 CDS YP_682303.1 110679296 4196720 1920822..1922603 1 NC_008209.1 Trk system potassium uptake protein trkA 1922603 trkA 4196720 trkA Roseobacter denitrificans OCh 114 Trk system potassium uptake protein trkA YP_682303.1 1920822 D 375451 CDS YP_682304.1 110679297 4196721 complement(1922634..1923266) 1 NC_008209.1 hypothetical protein 1923266 4196721 RD1_2015 Roseobacter denitrificans OCh 114 hypothetical protein YP_682304.1 1922634 R 375451 CDS YP_682305.1 110679298 4196722 complement(1923336..1925108) 1 NC_008209.1 TrkA domain-containing protein 1925108 4196722 RD1_2016 Roseobacter denitrificans OCh 114 TrkA domain-containing protein YP_682305.1 1923336 R 375451 CDS YP_682306.1 110679299 4196723 complement(1925120..1925218) 1 NC_008209.1 hypothetical protein 1925218 4196723 RD1_2017 Roseobacter denitrificans OCh 114 hypothetical protein YP_682306.1 1925120 R 375451 CDS YP_682307.1 110679300 4196724 1925358..1926098 1 NC_008209.1 hypothetical protein 1926098 4196724 RD1_2018 Roseobacter denitrificans OCh 114 hypothetical protein YP_682307.1 1925358 D 375451 CDS YP_682308.1 110679301 4196725 complement(1926148..1926402) 1 NC_008209.1 hypothetical protein 1926402 4196725 RD1_2019 Roseobacter denitrificans OCh 114 hypothetical protein YP_682308.1 1926148 R 375451 CDS YP_682309.1 110679302 4196726 1926574..1927479 1 NC_008209.1 hypothetical protein 1927479 4196726 RD1_2020 Roseobacter denitrificans OCh 114 hypothetical protein YP_682309.1 1926574 D 375451 CDS YP_682310.1 110679303 4196727 1927554..1928129 1 NC_008209.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 1928129 betI 4196727 betI Roseobacter denitrificans OCh 114 transcriptional regulator BetI YP_682310.1 1927554 D 375451 CDS YP_682311.1 110679304 4196728 1928126..1929634 1 NC_008209.1 choline sulfatase 1929634 betC-1 4196728 betC-1 Roseobacter denitrificans OCh 114 choline sulfatase YP_682311.1 1928126 D 375451 CDS YP_682312.1 110679305 4196729 1929674..1931131 1 NC_008209.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1931131 betB 4196729 betB Roseobacter denitrificans OCh 114 betaine aldehyde dehydrogenase YP_682312.1 1929674 D 375451 CDS YP_682313.1 110679306 4196691 1931387..1933045 1 NC_008209.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 1933045 betA 4196691 betA Roseobacter denitrificans OCh 114 choline dehydrogenase YP_682313.1 1931387 D 375451 CDS YP_682314.1 110679307 4196692 1933105..1933776 1 NC_008209.1 succinoglycan biosynthesis protein 1933776 4196692 RD1_2025 Roseobacter denitrificans OCh 114 succinoglycan biosynthesis protein YP_682314.1 1933105 D 375451 CDS YP_682315.1 110679308 4196693 complement(1933779..1935206) 1 NC_008209.1 DNA-binding protein 1935206 4196693 RD1_2026 Roseobacter denitrificans OCh 114 DNA-binding protein YP_682315.1 1933779 R 375451 CDS YP_682316.1 110679309 4196694 complement(1935291..1936556) 1 NC_008209.1 MFS protein 1936556 4196694 RD1_2027 Roseobacter denitrificans OCh 114 MFS protein YP_682316.1 1935291 R 375451 CDS YP_682317.1 110679310 4196695 1936990..1938522 1 NC_008209.1 propionyl-CoA carboxylase subunit beta 1938522 pccB 4196695 pccB Roseobacter denitrificans OCh 114 propionyl-CoA carboxylase subunit beta YP_682317.1 1936990 D 375451 CDS YP_682318.1 110679311 4196696 1938631..1939023 1 NC_008209.1 hypothetical protein 1939023 4196696 RD1_2029 Roseobacter denitrificans OCh 114 hypothetical protein YP_682318.1 1938631 D 375451 CDS YP_682319.1 110679312 4196697 1939103..1939450 1 NC_008209.1 hypothetical protein 1939450 4196697 RD1_2030 Roseobacter denitrificans OCh 114 hypothetical protein YP_682319.1 1939103 D 375451 CDS YP_682320.1 110679313 4196698 1939764..1939970 1 NC_008209.1 hypothetical protein 1939970 4196698 RD1_2031 Roseobacter denitrificans OCh 114 hypothetical protein YP_682320.1 1939764 D 375451 CDS YP_682321.1 110679314 4196699 1940087..1942132 1 NC_008209.1 propionyl-CoA carboxylase subunit alpha 1942132 pccA 4196699 pccA Roseobacter denitrificans OCh 114 propionyl-CoA carboxylase subunit alpha YP_682321.1 1940087 D 375451 CDS YP_682322.1 110679315 4196700 complement(1942185..1942640) 1 NC_008209.1 hypothetical protein 1942640 4196700 RD1_2033 Roseobacter denitrificans OCh 114 hypothetical protein YP_682322.1 1942185 R 375451 CDS YP_682323.1 110679316 4196701 1942806..1943729 1 NC_008209.1 hypothetical protein 1943729 4196701 RD1_2034 Roseobacter denitrificans OCh 114 hypothetical protein YP_682323.1 1942806 D 375451 CDS YP_682324.1 110679317 4196702 1943692..1945821 1 NC_008209.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1945821 mutA 4196702 mutA Roseobacter denitrificans OCh 114 methylmalonyl-CoA mutase YP_682324.1 1943692 D 375451 CDS YP_682325.1 110679318 4196703 1945818..1946435 1 NC_008209.1 hypothetical protein 1946435 4196703 RD1_2036 Roseobacter denitrificans OCh 114 hypothetical protein YP_682325.1 1945818 D 375451 CDS YP_682326.1 110679319 4196704 1946432..1946908 1 NC_008209.1 acetyltransferase 1946908 4196704 RD1_2037 Roseobacter denitrificans OCh 114 acetyltransferase YP_682326.1 1946432 D 375451 CDS YP_682327.1 110679320 4196705 1946960..1947640 1 NC_008209.1 DnaJ-like protein 1947640 djlA 4196705 djlA Roseobacter denitrificans OCh 114 DnaJ-like protein YP_682327.1 1946960 D 375451 CDS YP_682328.1 110679321 4196706 1947742..1948071 1 NC_008209.1 hypothetical protein 1948071 4196706 RD1_2040 Roseobacter denitrificans OCh 114 hypothetical protein YP_682328.1 1947742 D 375451 CDS YP_682329.1 110679322 4196707 complement(1948164..1949726) 1 NC_008209.1 Ppx/GppA phosphatase 1949726 4196707 RD1_2041 Roseobacter denitrificans OCh 114 Ppx/GppA phosphatase YP_682329.1 1948164 R 375451 CDS YP_682330.1 110679323 4196708 complement(1949833..1952058) 1 NC_008209.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1952058 ppk 4196708 ppk Roseobacter denitrificans OCh 114 polyphosphate kinase YP_682330.1 1949833 R 375451 CDS YP_682331.1 110679324 4196709 complement(1952048..1952731) 1 NC_008209.1 hypothetical protein 1952731 4196709 RD1_2043 Roseobacter denitrificans OCh 114 hypothetical protein YP_682331.1 1952048 R 375451 CDS YP_682332.1 110679325 4196671 complement(1952733..1953800) 1 NC_008209.1 hypothetical protein 1953800 4196671 RD1_2044 Roseobacter denitrificans OCh 114 hypothetical protein YP_682332.1 1952733 R 375451 CDS YP_682333.1 110679326 4196672 1954002..1955357 1 NC_008209.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1955357 proS 4196672 proS Roseobacter denitrificans OCh 114 prolyl-tRNA synthetase YP_682333.1 1954002 D 375451 CDS YP_682334.1 110679327 4196673 1955445..1955942 1 NC_008209.1 hypothetical protein 1955942 4196673 RD1_2046 Roseobacter denitrificans OCh 114 hypothetical protein YP_682334.1 1955445 D 375451 CDS YP_682335.1 110679328 4196674 1955995..1957281 1 NC_008209.1 lipoprotein releasing system transmembrane protein 1957281 4196674 RD1_2047 Roseobacter denitrificans OCh 114 lipoprotein releasing system transmembrane protein YP_682335.1 1955995 D 375451 CDS YP_682336.1 110679329 4196675 1957274..1957957 1 NC_008209.1 ABC transporter ATP-binding protein 1957957 lolD 4196675 lolD Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682336.1 1957274 D 375451 CDS YP_682337.1 110679330 4196676 1958004..1958999 1 NC_008209.1 malate/L-lactate dehydrogenase 1958999 4196676 RD1_2049 Roseobacter denitrificans OCh 114 malate/L-lactate dehydrogenase YP_682337.1 1958004 D 375451 CDS YP_682338.1 110679331 4196677 complement(1958983..1959426) 1 NC_008209.1 hypothetical protein 1959426 4196677 RD1_2050 Roseobacter denitrificans OCh 114 hypothetical protein YP_682338.1 1958983 R 375451 CDS YP_682339.1 110679332 4196678 1959552..1959932 1 NC_008209.1 hypothetical protein 1959932 4196678 RD1_2051 Roseobacter denitrificans OCh 114 hypothetical protein YP_682339.1 1959552 D 375451 CDS YP_682340.1 110679333 4196679 complement(1959933..1960559) 1 NC_008209.1 hypothetical protein 1960559 4196679 RD1_2052 Roseobacter denitrificans OCh 114 hypothetical protein YP_682340.1 1959933 R 375451 CDS YP_682341.1 110679334 4196680 1960633..1960746 1 NC_008209.1 hypothetical protein 1960746 4196680 RD1_2053 Roseobacter denitrificans OCh 114 hypothetical protein YP_682341.1 1960633 D 375451 CDS YP_682342.1 110679335 4196681 1960760..1961155 1 NC_008209.1 cytochrome c family protein 1961155 4196681 RD1_2054 Roseobacter denitrificans OCh 114 cytochrome c family protein YP_682342.1 1960760 D 375451 CDS YP_682343.1 110679336 4196682 1961515..1961799 1 NC_008209.1 hypothetical protein 1961799 4196682 RD1_2055 Roseobacter denitrificans OCh 114 hypothetical protein YP_682343.1 1961515 D 375451 CDS YP_682344.1 110679337 4196683 complement(1962049..1962768) 1 NC_008209.1 hypothetical protein 1962768 4196683 RD1_2056 Roseobacter denitrificans OCh 114 hypothetical protein YP_682344.1 1962049 R 375451 CDS YP_682345.1 110679338 4196684 complement(1962765..1964813) 1 NC_008209.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1964813 parE 4196684 parE Roseobacter denitrificans OCh 114 DNA topoisomerase IV subunit B YP_682345.1 1962765 R 375451 CDS YP_682346.1 110679339 4196685 complement(1964810..1965001) 1 NC_008209.1 hypothetical protein 1965001 4196685 RD1_2058 Roseobacter denitrificans OCh 114 hypothetical protein YP_682346.1 1964810 R 375451 CDS YP_682347.1 110679340 4196686 complement(1965177..1966460) 1 NC_008209.1 hypothetical protein 1966460 4196686 RD1_2059 Roseobacter denitrificans OCh 114 hypothetical protein YP_682347.1 1965177 R 375451 CDS YP_682348.1 110679341 4196687 1966561..1968069 1 NC_008209.1 MATE efflux family protein 1968069 4196687 RD1_2060 Roseobacter denitrificans OCh 114 MATE efflux family protein YP_682348.1 1966561 D 375451 CDS YP_682349.1 110679342 4196688 complement(1968226..1969008) 1 NC_008209.1 n-formylglutamate amidohydrolase 1969008 4196688 RD1_2061 Roseobacter denitrificans OCh 114 n-formylglutamate amidohydrolase YP_682349.1 1968226 R 375451 CDS YP_682350.1 110679343 4196689 complement(1969122..1969958) 1 NC_008209.1 hypothetical protein 1969958 4196689 RD1_2062 Roseobacter denitrificans OCh 114 hypothetical protein YP_682350.1 1969122 R 375451 CDS YP_682351.1 110679344 4196690 complement(1969975..1971168) 1 NC_008209.1 oxidoreductase 1971168 4196690 RD1_2063 Roseobacter denitrificans OCh 114 oxidoreductase YP_682351.1 1969975 R 375451 CDS YP_682352.1 110679345 4196652 complement(1971252..1972271) 1 NC_008209.1 phosphotransferase 1972271 4196652 RD1_2064 Roseobacter denitrificans OCh 114 phosphotransferase YP_682352.1 1971252 R 375451 CDS YP_682353.1 110679346 4196653 1972370..1973605 1 NC_008209.1 acyl-CoA dehydrogenase 1973605 4196653 RD1_2065 Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_682353.1 1972370 D 375451 CDS YP_682354.1 110679347 4196654 1973795..1973893 1 NC_008209.1 hypothetical protein 1973893 4196654 RD1_2066 Roseobacter denitrificans OCh 114 hypothetical protein YP_682354.1 1973795 D 375451 CDS YP_682355.1 110679348 4196655 1973931..1974824 1 NC_008209.1 renal dipeptidase family protein 1974824 4196655 RD1_2067 Roseobacter denitrificans OCh 114 renal dipeptidase family protein YP_682355.1 1973931 D 375451 CDS YP_682356.1 110679349 4196656 1974821..1976479 1 NC_008209.1 hypothetical protein 1976479 4196656 RD1_2068 Roseobacter denitrificans OCh 114 hypothetical protein YP_682356.1 1974821 D 375451 CDS YP_682357.1 110679350 4196657 1976455..1976976 1 NC_008209.1 hypothetical protein 1976976 4196657 RD1_2069 Roseobacter denitrificans OCh 114 hypothetical protein YP_682357.1 1976455 D 375451 CDS YP_682358.1 110679351 4196658 complement(1976973..1977755) 1 NC_008209.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1977755 truA 4196658 truA Roseobacter denitrificans OCh 114 tRNA pseudouridine synthase A YP_682358.1 1976973 R 375451 CDS YP_682359.1 110679352 4196659 1977869..1979284 1 NC_008209.1 hypothetical protein 1979284 4196659 RD1_2071 Roseobacter denitrificans OCh 114 hypothetical protein YP_682359.1 1977869 D 375451 CDS YP_682360.1 110679353 4196660 1979281..1979766 1 NC_008209.1 acetyltransferase 1979766 4196660 RD1_2072 Roseobacter denitrificans OCh 114 acetyltransferase YP_682360.1 1979281 D 375451 CDS YP_682361.1 110679354 4196661 1979766..1980761 1 NC_008209.1 hypothetical protein 1980761 4196661 RD1_2073 Roseobacter denitrificans OCh 114 hypothetical protein YP_682361.1 1979766 D 375451 CDS YP_682362.1 110679355 4196662 1980967..1983960 1 NC_008209.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1983960 ileS 4196662 ileS Roseobacter denitrificans OCh 114 isoleucyl-tRNA synthetase YP_682362.1 1980967 D 375451 CDS YP_682363.1 110679356 4196663 1984032..1984487 1 NC_008209.1 methylated-DNA--protein-cysteine methyltransferase 1984487 ogt 4196663 ogt Roseobacter denitrificans OCh 114 methylated-DNA--protein-cysteine methyltransferase YP_682363.1 1984032 D 375451 CDS YP_682364.1 110679357 4196664 1984579..1984674 1 NC_008209.1 hypothetical protein 1984674 4196664 RD1_2076 Roseobacter denitrificans OCh 114 hypothetical protein YP_682364.1 1984579 D 375451 CDS YP_682365.1 110679358 4196665 complement(1984649..1985347) 1 NC_008209.1 phosphatidylcholine synthase 1985347 pcs 4196665 pcs Roseobacter denitrificans OCh 114 phosphatidylcholine synthase YP_682365.1 1984649 R 375451 CDS YP_682366.1 110679359 4196666 complement(1985421..1986341) 1 NC_008209.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1986341 xerC 4196666 xerC Roseobacter denitrificans OCh 114 site-specific tyrosine recombinase XerC YP_682366.1 1985421 R 375451 CDS YP_682367.1 110679360 4196667 complement(1986338..1987045) 1 NC_008209.1 hypothetical protein 1987045 4196667 RD1_2079 Roseobacter denitrificans OCh 114 hypothetical protein YP_682367.1 1986338 R 375451 CDS YP_682368.1 110679361 4196668 complement(1987190..1987843) 1 NC_008209.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1987843 tal 4196668 tal Roseobacter denitrificans OCh 114 translaldolase YP_682368.1 1987190 R 375451 CDS YP_682369.1 110679362 4196669 1988001..1990163 1 NC_008209.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1990163 priA 4196669 priA Roseobacter denitrificans OCh 114 primosome assembly protein PriA YP_682369.1 1988001 D 375451 CDS YP_682370.1 110679363 4196670 1990255..1991487 1 NC_008209.1 MFS protein, permease component 1991487 4196670 RD1_2082 Roseobacter denitrificans OCh 114 MFS protein, permease component YP_682370.1 1990255 D 375451 CDS YP_682371.1 110679364 4196632 1991517..1992875 1 NC_008209.1 MATE efflux family protein 1992875 4196632 RD1_2083 Roseobacter denitrificans OCh 114 MATE efflux family protein YP_682371.1 1991517 D 375451 CDS YP_682372.1 110679365 4196633 1992875..1993747 1 NC_008209.1 50S ribosomal protein L11 methyltransferase 1993747 prmA 4196633 prmA Roseobacter denitrificans OCh 114 50S ribosomal protein L11 methyltransferase YP_682372.1 1992875 D 375451 CDS YP_682373.1 110679366 4196634 1993844..1994188 1 NC_008209.1 hypothetical protein 1994188 4196634 RD1_2085 Roseobacter denitrificans OCh 114 hypothetical protein YP_682373.1 1993844 D 375451 CDS YP_682374.1 110679367 4196635 complement(1994308..1994526) 1 NC_008209.1 hypothetical protein 1994526 4196635 RD1_2086 Roseobacter denitrificans OCh 114 hypothetical protein YP_682374.1 1994308 R 375451 CDS YP_682375.1 110679368 4196636 1994802..1995365 1 NC_008209.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1995365 ruvC 4196636 ruvC Roseobacter denitrificans OCh 114 Holliday junction resolvase YP_682375.1 1994802 D 375451 CDS YP_682376.1 110679369 4196637 1995362..1996018 1 NC_008209.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1996018 ruvA 4196637 ruvA Roseobacter denitrificans OCh 114 Holliday junction DNA helicase RuvA YP_682376.1 1995362 D 375451 CDS YP_682377.1 110679370 4196638 1996043..1997065 1 NC_008209.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1997065 ruvB 4196638 ruvB Roseobacter denitrificans OCh 114 Holliday junction DNA helicase RuvB YP_682377.1 1996043 D 375451 CDS YP_682378.1 110679371 4196639 1997108..1997734 1 NC_008209.1 hypothetical protein 1997734 4196639 RD1_2091 Roseobacter denitrificans OCh 114 hypothetical protein YP_682378.1 1997108 D 375451 CDS YP_682379.1 110679372 4196640 1997731..1998129 1 NC_008209.1 thioesterase family protein 1998129 4196640 RD1_2092 Roseobacter denitrificans OCh 114 thioesterase family protein YP_682379.1 1997731 D 375451 CDS YP_682380.1 110679373 4196641 1998228..1998923 1 NC_008209.1 proton transporter TolQ 1998923 tolQ 4196641 tolQ Roseobacter denitrificans OCh 114 proton transporter TolQ YP_682380.1 1998228 D 375451 CDS YP_682381.1 110679374 4196642 1998927..1999421 1 NC_008209.1 ExbD/TolR family biopolymer transport protein 1999421 4196642 RD1_2095 Roseobacter denitrificans OCh 114 ExbD/TolR family biopolymer transport protein YP_682381.1 1998927 D 375451 CDS YP_682382.1 110679375 4196643 1999484..2000524 1 NC_008209.1 hypothetical protein 2000524 4196643 RD1_2096 Roseobacter denitrificans OCh 114 hypothetical protein YP_682382.1 1999484 D 375451 CDS YP_682383.1 110679376 4196644 2000521..2001852 1 NC_008209.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2001852 tolB 4196644 tolB Roseobacter denitrificans OCh 114 translocation protein TolB YP_682383.1 2000521 D 375451 CDS YP_682384.1 110679377 4196645 2001942..2002454 1 NC_008209.1 peptidoglycan-associated lipoprotein 2002454 pal 4196645 pal Roseobacter denitrificans OCh 114 peptidoglycan-associated lipoprotein YP_682384.1 2001942 D 375451 CDS YP_682385.1 110679378 4196646 2002459..2003304 1 NC_008209.1 hypothetical protein 2003304 4196646 RD1_2099 Roseobacter denitrificans OCh 114 hypothetical protein YP_682385.1 2002459 D 375451 CDS YP_682386.1 110679379 4196647 2003311..2004555 1 NC_008209.1 hypothetical protein 2004555 4196647 RD1_2100 Roseobacter denitrificans OCh 114 hypothetical protein YP_682386.1 2003311 D 375451 CDS YP_682387.1 110679380 4196648 2004636..2006561 1 NC_008209.1 cell division protein FtsH 2006561 ftsH 4196648 ftsH Roseobacter denitrificans OCh 114 cell division protein FtsH YP_682387.1 2004636 D 375451 CDS YP_682388.1 110679381 4196649 2007066..2007677 1 NC_008209.1 MOSC domain-containing protein 2007677 4196649 RD1_2103 Roseobacter denitrificans OCh 114 MOSC domain-containing protein YP_682388.1 2007066 D 375451 CDS YP_682389.1 110679382 4196650 2008142..2008612 1 NC_008209.1 hypothetical protein 2008612 4196650 RD1_2104 Roseobacter denitrificans OCh 114 hypothetical protein YP_682389.1 2008142 D 375451 CDS YP_682390.1 110679383 4196651 2008627..2009529 1 NC_008209.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2009529 folD 4196651 folD Roseobacter denitrificans OCh 114 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_682390.1 2008627 D 375451 CDS YP_682391.1 110679384 4196613 complement(2009526..2009963) 1 NC_008209.1 hypothetical protein 2009963 4196613 RD1_2106 Roseobacter denitrificans OCh 114 hypothetical protein YP_682391.1 2009526 R 375451 CDS YP_682392.1 110679385 4196614 complement(2009973..2010635) 1 NC_008209.1 hypothetical protein 2010635 4196614 RD1_2107 Roseobacter denitrificans OCh 114 hypothetical protein YP_682392.1 2009973 R 375451 CDS YP_682393.1 110679386 4196615 complement(2010675..2013128) 1 NC_008209.1 DEAD/DEAH box helicase 2013128 4196615 RD1_2108 Roseobacter denitrificans OCh 114 DEAD/DEAH box helicase YP_682393.1 2010675 R 375451 CDS YP_682394.1 110679387 4196616 complement(2013185..2014492) 1 NC_008209.1 hypothetical protein 2014492 4196616 RD1_2109 Roseobacter denitrificans OCh 114 hypothetical protein YP_682394.1 2013185 R 375451 CDS YP_682395.1 110679388 4196617 2014481..2014660 1 NC_008209.1 hypothetical protein 2014660 4196617 RD1_2110 Roseobacter denitrificans OCh 114 hypothetical protein YP_682395.1 2014481 D 375451 CDS YP_682396.1 110679389 4196618 complement(2015078..2015935) 1 NC_008209.1 hypothetical protein 2015935 4196618 RD1_2111 Roseobacter denitrificans OCh 114 hypothetical protein YP_682396.1 2015078 R 375451 CDS YP_682397.1 110679390 4196619 complement(2015966..2016559) 1 NC_008209.1 hypothetical protein 2016559 4196619 RD1_2112 Roseobacter denitrificans OCh 114 hypothetical protein YP_682397.1 2015966 R 375451 CDS YP_682398.1 110679391 4196620 complement(2016556..2017623) 1 NC_008209.1 TadC family type II/IV secretion system protein 2017623 4196620 RD1_2113 Roseobacter denitrificans OCh 114 TadC family type II/IV secretion system protein YP_682398.1 2016556 R 375451 CDS YP_682399.1 110679392 4196621 complement(2017551..2018513) 1 NC_008209.1 type II secretion system protein 2018513 4196621 RD1_2115 Roseobacter denitrificans OCh 114 type II secretion system protein YP_682399.1 2017551 R 375451 CDS YP_682400.1 110679393 4196622 complement(2018544..2020001) 1 NC_008209.1 type II/IV secretion system protein 2020001 4196622 RD1_2116 Roseobacter denitrificans OCh 114 type II/IV secretion system protein YP_682400.1 2018544 R 375451 CDS YP_682401.1 110679394 4196623 complement(2020021..2021256) 1 NC_008209.1 hypothetical protein 2021256 4196623 RD1_2117 Roseobacter denitrificans OCh 114 hypothetical protein YP_682401.1 2020021 R 375451 CDS YP_682402.1 110679395 4196624 complement(2021543..2021926) 1 NC_008209.1 hypothetical protein 2021926 4196624 RD1_2119 Roseobacter denitrificans OCh 114 hypothetical protein YP_682402.1 2021543 R 375451 CDS YP_682403.1 110679396 4196625 complement(2021931..2023322) 1 NC_008209.1 type II/III secretion system protein 2023322 4196625 RD1_2120 Roseobacter denitrificans OCh 114 type II/III secretion system protein YP_682403.1 2021931 R 375451 CDS YP_682404.1 110679397 4196626 2023337..2023471 1 NC_008209.1 hypothetical protein 2023471 4196626 RD1_2121 Roseobacter denitrificans OCh 114 hypothetical protein YP_682404.1 2023337 D 375451 CDS YP_682405.1 110679398 4196627 complement(2023515..2024363) 1 NC_008209.1 pilus assembly domain-containing protein 2024363 4196627 RD1_2122 Roseobacter denitrificans OCh 114 pilus assembly domain-containing protein YP_682405.1 2023515 R 375451 CDS YP_682406.1 110679399 4196628 complement(2024527..2024736) 1 NC_008209.1 hypothetical protein 2024736 4196628 RD1_2124 Roseobacter denitrificans OCh 114 hypothetical protein YP_682406.1 2024527 R 375451 CDS YP_682407.1 110679400 4196629 2024812..2024934 1 NC_008209.1 hypothetical protein 2024934 4196629 RD1_2125 Roseobacter denitrificans OCh 114 hypothetical protein YP_682407.1 2024812 D 375451 CDS YP_682408.1 110679401 4196630 complement(2024835..2025131) 1 NC_008209.1 hypothetical protein 2025131 4196630 RD1_2126 Roseobacter denitrificans OCh 114 hypothetical protein YP_682408.1 2024835 R 375451 CDS YP_682409.1 110679402 4196631 2025481..2026308 1 NC_008209.1 Slt family transglycosylase 2026308 4196631 RD1_2127 Roseobacter denitrificans OCh 114 Slt family transglycosylase YP_682409.1 2025481 D 375451 CDS YP_682410.1 110679403 4196593 complement(2026362..2026988) 1 NC_008209.1 3-oxoadipate CoA-succinyl transferase subunit beta 2026988 dxnH 4196593 dxnH Roseobacter denitrificans OCh 114 3-oxoadipate CoA-succinyl transferase subunit beta YP_682410.1 2026362 R 375451 CDS YP_682411.1 110679404 4196594 complement(2027001..2028053) 1 NC_008209.1 sensory box histidine kinase 2028053 4196594 RD1_2129 Roseobacter denitrificans OCh 114 sensory box histidine kinase YP_682411.1 2027001 R 375451 CDS YP_682412.1 110679405 4196595 complement(2028064..2028759) 1 NC_008209.1 3-oxoadipate CoA-succinyl transferase subunit alpha 2028759 dxnG 4196595 dxnG Roseobacter denitrificans OCh 114 3-oxoadipate CoA-succinyl transferase subunit alpha YP_682412.1 2028064 R 375451 CDS YP_682413.1 110679406 4196596 complement(2028915..2031551) 1 NC_008209.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2031551 topA 4196596 topA Roseobacter denitrificans OCh 114 DNA topoisomerase I YP_682413.1 2028915 R 375451 CDS YP_682414.1 110679407 4196597 complement(2031812..2032981) 1 NC_008209.1 DNA processing protein DprA 2032981 dprA 4196597 dprA Roseobacter denitrificans OCh 114 DNA processing protein DprA YP_682414.1 2031812 R 375451 CDS YP_682415.1 110679408 4196598 complement(2033079..2034500) 1 NC_008209.1 TldD protein 2034500 tldD 4196598 tldD Roseobacter denitrificans OCh 114 TldD protein YP_682415.1 2033079 R 375451 CDS YP_682416.1 110679409 4196599 2034521..2034691 1 NC_008209.1 hypothetical protein 2034691 4196599 RD1_2134 Roseobacter denitrificans OCh 114 hypothetical protein YP_682416.1 2034521 D 375451 CDS YP_682417.1 110679410 4196600 2034688..2035602 1 NC_008209.1 cytochrome c oxidase subunit II 2035602 ctaC 4196600 ctaC Roseobacter denitrificans OCh 114 cytochrome c oxidase subunit II YP_682417.1 2034688 D 375451 CDS YP_682418.1 110679411 4196601 2035664..2036608 1 NC_008209.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2036608 ctaB 4196601 ctaB Roseobacter denitrificans OCh 114 protoheme IX farnesyltransferase YP_682418.1 2035664 D 375451 CDS YP_682419.1 110679412 4196602 2036612..2036776 1 NC_008209.1 hypothetical protein 2036776 4196602 RD1_2137 Roseobacter denitrificans OCh 114 hypothetical protein YP_682419.1 2036612 D 375451 CDS YP_682420.1 110679413 4196603 2036776..2037360 1 NC_008209.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 2037360 ctaG 4196603 ctaG Roseobacter denitrificans OCh 114 cytochrome C oxidase assembly protein YP_682420.1 2036776 D 375451 CDS YP_682421.1 110679414 4196604 2037386..2038207 1 NC_008209.1 cytochrome c oxidase subunit III 2038207 ctaE 4196604 ctaE Roseobacter denitrificans OCh 114 cytochrome c oxidase subunit III YP_682421.1 2037386 D 375451 CDS YP_682422.1 110679415 4196605 2038279..2038959 1 NC_008209.1 SURF1 family protein 2038959 surF 4196605 surF Roseobacter denitrificans OCh 114 SURF1 family protein YP_682422.1 2038279 D 375451 CDS YP_682423.1 110679416 4196606 2038965..2040347 1 NC_008209.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2040347 thrC 4196606 thrC Roseobacter denitrificans OCh 114 threonine synthase YP_682423.1 2038965 D 375451 CDS YP_682424.1 110679417 4196607 2040350..2041612 1 NC_008209.1 M16 family peptidase 2041612 mpp 4196607 mpp Roseobacter denitrificans OCh 114 M16 family peptidase YP_682424.1 2040350 D 375451 CDS YP_682425.1 110679418 4196608 2041609..2042196 1 NC_008209.1 acetyltransferase 2042196 4196608 RD1_2143 Roseobacter denitrificans OCh 114 acetyltransferase YP_682425.1 2041609 D 375451 CDS YP_682426.1 110679419 4196609 2042316..2043137 1 NC_008209.1 hypothetical protein 2043137 4196609 RD1_2144 Roseobacter denitrificans OCh 114 hypothetical protein YP_682426.1 2042316 D 375451 CDS YP_682427.1 110679420 4196610 2043182..2044618 1 NC_008209.1 oxidoreductase 2044618 4196610 RD1_2145 Roseobacter denitrificans OCh 114 oxidoreductase YP_682427.1 2043182 D 375451 CDS YP_682428.1 110679421 4196611 2044702..2045166 1 NC_008209.1 hypothetical protein 2045166 4196611 RD1_2147 Roseobacter denitrificans OCh 114 hypothetical protein YP_682428.1 2044702 D 375451 CDS YP_682429.1 110679422 4196612 complement(2045167..2045697) 1 NC_008209.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2045697 apt 4196612 apt Roseobacter denitrificans OCh 114 adenine phosphoribosyltransferase YP_682429.1 2045167 R 375451 CDS YP_682430.1 110679423 4196574 complement(2045712..2046332) 1 NC_008209.1 LysE family protein 2046332 4196574 RD1_2149 Roseobacter denitrificans OCh 114 LysE family protein YP_682430.1 2045712 R 375451 CDS YP_682431.1 110679424 4196575 complement(2046350..2047222) 1 NC_008209.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 2047222 4196575 RD1_2150 Roseobacter denitrificans OCh 114 5'-methylthioadenosine phosphorylase YP_682431.1 2046350 R 375451 CDS YP_682432.1 110679425 4196576 2047484..2049112 1 NC_008209.1 sulfate transporter family protein 2049112 4196576 RD1_2151 Roseobacter denitrificans OCh 114 sulfate transporter family protein YP_682432.1 2047484 D 375451 CDS YP_682433.1 110679426 4196577 complement(2049211..2049816) 1 NC_008209.1 hypothetical protein 2049816 4196577 RD1_2152 Roseobacter denitrificans OCh 114 hypothetical protein YP_682433.1 2049211 R 375451 CDS YP_682434.1 110679427 4196578 2049910..2050401 1 NC_008209.1 acetyltransferase 2050401 4196578 RD1_2153 Roseobacter denitrificans OCh 114 acetyltransferase YP_682434.1 2049910 D 375451 CDS YP_682435.1 110679428 4196579 2050444..2051205 1 NC_008209.1 hypothetical protein 2051205 4196579 RD1_2154 Roseobacter denitrificans OCh 114 hypothetical protein YP_682435.1 2050444 D 375451 CDS YP_682436.1 110679429 4196580 2051361..2051822 1 NC_008209.1 NUDIX domain-containing protein 2051822 4196580 RD1_2155 Roseobacter denitrificans OCh 114 NUDIX domain-containing protein YP_682436.1 2051361 D 375451 CDS YP_682437.1 110679430 4196581 2051894..2052319 1 NC_008209.1 hypothetical protein 2052319 4196581 RD1_2156 Roseobacter denitrificans OCh 114 hypothetical protein YP_682437.1 2051894 D 375451 CDS YP_682438.1 110679431 4196582 2052577..2053815 1 NC_008209.1 aspartate kinase 2053815 4196582 RD1_2157 Roseobacter denitrificans OCh 114 aspartate kinase YP_682438.1 2052577 D 375451 CDS YP_682439.1 110679432 4196583 2053861..2056104 1 NC_008209.1 phosphoenolpyruvate-protein phosphotransferase 2056104 ptsP 4196583 ptsP Roseobacter denitrificans OCh 114 phosphoenolpyruvate-protein phosphotransferase YP_682439.1 2053861 D 375451 CDS YP_682440.1 110679433 4196584 2056129..2057226 1 NC_008209.1 hypothetical protein 2057226 4196584 RD1_2159 Roseobacter denitrificans OCh 114 hypothetical protein YP_682440.1 2056129 D 375451 CDS YP_682441.1 110679434 4196585 complement(2057223..2057624) 1 NC_008209.1 hypothetical protein 2057624 4196585 RD1_2160 Roseobacter denitrificans OCh 114 hypothetical protein YP_682441.1 2057223 R 375451 CDS YP_682442.1 110679435 4196586 complement(2057832..2060390) 1 NC_008209.1 methyl-accepting chemotaxis protein 2060390 mcp 4196586 mcp Roseobacter denitrificans OCh 114 methyl-accepting chemotaxis protein YP_682442.1 2057832 R 375451 CDS YP_682443.1 110679436 4196587 complement(2060617..2061324) 1 NC_008209.1 ABC transporter ATP-binding protein 2061324 4196587 RD1_2162 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682443.1 2060617 R 375451 CDS YP_682444.1 110679437 4196588 complement(2061314..2062054) 1 NC_008209.1 ABC transporter ATP-binding protein 2062054 4196588 RD1_2163 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682444.1 2061314 R 375451 CDS YP_682445.1 110679438 4196589 complement(2062051..2063307) 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2063307 4196589 RD1_2164 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_682445.1 2062051 R 375451 CDS YP_682446.1 110679439 4196590 complement(2063311..2065320) 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2065320 4196590 RD1_2165 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_682446.1 2063311 R 375451 CDS YP_682447.1 110679440 4196591 complement(2065347..2066690) 1 NC_008209.1 ABC transporter substrate-binding protein 2066690 4196591 RD1_2166 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_682447.1 2065347 R 375451 CDS YP_682448.1 110679441 4196592 complement(2066696..2066788) 1 NC_008209.1 hypothetical protein 2066788 4196592 RD1_2167 Roseobacter denitrificans OCh 114 hypothetical protein YP_682448.1 2066696 R 375451 CDS YP_682449.1 110679442 4196554 complement(2066909..2067343) 1 NC_008209.1 hypothetical protein 2067343 4196554 RD1_2168 Roseobacter denitrificans OCh 114 hypothetical protein YP_682449.1 2066909 R 375451 CDS YP_682450.1 110679443 4196555 complement(2067427..2067522) 1 NC_008209.1 hypothetical protein 2067522 4196555 RD1_2169 Roseobacter denitrificans OCh 114 hypothetical protein YP_682450.1 2067427 R 375451 CDS YP_682451.1 110679444 4196556 2067493..2067648 1 NC_008209.1 hypothetical protein 2067648 4196556 RD1_2170 Roseobacter denitrificans OCh 114 hypothetical protein YP_682451.1 2067493 D 375451 CDS YP_682452.1 110679445 4196557 complement(2067645..2068790) 1 NC_008209.1 NAD-dependent 4-hydroxybutyrate dehydrogenase 2068790 gbd 4196557 gbd Roseobacter denitrificans OCh 114 NAD-dependent 4-hydroxybutyrate dehydrogenase YP_682452.1 2067645 R 375451 CDS YP_682453.1 110679446 4196558 complement(2068795..2070165) 1 NC_008209.1 aldehyde dehydrogenase 2070165 4196558 RD1_2172 Roseobacter denitrificans OCh 114 aldehyde dehydrogenase YP_682453.1 2068795 R 375451 CDS YP_682454.1 110679447 4196559 complement(2070169..2071533) 1 NC_008209.1 gamma-glutamylisopropylamide synthetase 2071533 ipuC 4196559 ipuC Roseobacter denitrificans OCh 114 gamma-glutamylisopropylamide synthetase YP_682454.1 2070169 R 375451 CDS YP_682455.1 110679448 4196560 complement(2071596..2072627) 1 NC_008209.1 mannitol ABC transporter substrate-binding protein 2072627 4196560 RD1_2174 Roseobacter denitrificans OCh 114 mannitol ABC transporter substrate-binding protein YP_682455.1 2071596 R 375451 CDS YP_682456.1 110679449 4196561 complement(2072676..2074055) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 2074055 4196561 RD1_2175 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_682456.1 2072676 R 375451 CDS YP_682457.1 110679450 4196562 complement(2074001..2074558) 1 NC_008209.1 hypothetical protein 2074558 4196562 RD1_2176 Roseobacter denitrificans OCh 114 hypothetical protein YP_682457.1 2074001 R 375451 CDS YP_682458.1 110679451 4196563 complement(2074558..2075322) 1 NC_008209.1 hypothetical protein 2075322 4196563 RD1_2177 Roseobacter denitrificans OCh 114 hypothetical protein YP_682458.1 2074558 R 375451 CDS YP_682459.1 110679452 4196564 2075437..2076309 1 NC_008209.1 RpiR family transcription regulator 2076309 4196564 RD1_2178 Roseobacter denitrificans OCh 114 RpiR family transcription regulator YP_682459.1 2075437 D 375451 CDS YP_682460.1 110679453 4196565 complement(2076320..2077915) 1 NC_008209.1 gamma-glutamyltranspeptidase 2077915 ggtA 4196565 ggtA Roseobacter denitrificans OCh 114 gamma-glutamyltranspeptidase YP_682460.1 2076320 R 375451 CDS YP_682461.1 110679454 4196566 complement(2078032..2079477) 1 NC_008209.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2079477 cobQ 4196566 cobQ Roseobacter denitrificans OCh 114 cobyric acid synthase YP_682461.1 2078032 R 375451 CDS YP_682462.1 110679455 4196567 complement(2079488..2080096) 1 NC_008209.1 cob(I)yrinic acid a,c-diamide adenosyltransferase 2080096 cobO 4196567 cobO Roseobacter denitrificans OCh 114 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_682462.1 2079488 R 375451 CDS YP_682463.1 110679456 4196568 2080294..2081103 1 NC_008209.1 amino acid ABC transporter substrate-binding protein 2081103 4196568 RD1_2182 Roseobacter denitrificans OCh 114 amino acid ABC transporter substrate-binding protein YP_682463.1 2080294 D 375451 CDS YP_682464.1 110679457 4196569 2081111..2081920 1 NC_008209.1 glutamine ABC transporter permease 2081920 4196569 RD1_2183 Roseobacter denitrificans OCh 114 glutamine ABC transporter permease YP_682464.1 2081111 D 375451 CDS YP_682465.1 110679458 4196570 2081907..2082644 1 NC_008209.1 amino acid ABC transporter ATP-binding protein 2082644 4196570 RD1_2184 Roseobacter denitrificans OCh 114 amino acid ABC transporter ATP-binding protein YP_682465.1 2081907 D 375451 CDS YP_682466.1 110679459 4196571 2082753..2083742 1 NC_008209.1 C4-dicarboxylate ABC transporter substrate-binding protein 2083742 dctP 4196571 dctP Roseobacter denitrificans OCh 114 C4-dicarboxylate ABC transporter substrate-binding protein YP_682466.1 2082753 D 375451 CDS YP_682467.1 110679460 4196572 2083777..2084298 1 NC_008209.1 TRAP transporter DctQ-like subunit 2084298 4196572 RD1_2186 Roseobacter denitrificans OCh 114 TRAP transporter DctQ-like subunit YP_682467.1 2083777 D 375451 CDS YP_682468.1 110679461 4196573 2084295..2085569 1 NC_008209.1 TRAP C4-dicarboxylate transport system permease DctM 2085569 4196573 RD1_2187 Roseobacter denitrificans OCh 114 TRAP C4-dicarboxylate transport system permease DctM YP_682468.1 2084295 D 375451 CDS YP_682469.1 110679462 4196535 2085574..2086449 1 NC_008209.1 carboxyvinyl-carboxyphosphonate phosphorylmutase 2086449 4196535 RD1_2188 Roseobacter denitrificans OCh 114 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_682469.1 2085574 D 375451 CDS YP_682470.1 110679463 4196536 complement(2086478..2088523) 1 NC_008209.1 oxidoreductase 2088523 4196536 RD1_2189 Roseobacter denitrificans OCh 114 oxidoreductase YP_682470.1 2086478 R 375451 CDS YP_682471.1 110679464 4196537 complement(2088684..2090255) 1 NC_008209.1 oxidoreductase 2090255 4196537 RD1_2190 Roseobacter denitrificans OCh 114 oxidoreductase YP_682471.1 2088684 R 375451 CDS YP_682472.1 110679465 4196538 complement(2090271..2090795) 1 NC_008209.1 hypothetical protein 2090795 4196538 RD1_2191 Roseobacter denitrificans OCh 114 hypothetical protein YP_682472.1 2090271 R 375451 CDS YP_682473.1 110679466 4196539 complement(2090813..2091208) 1 NC_008209.1 lactoylglutathione lyase 2091208 glo 4196539 glo Roseobacter denitrificans OCh 114 lactoylglutathione lyase YP_682473.1 2090813 R 375451 CDS YP_682474.1 110679467 4196540 complement(2091316..2091609) 1 NC_008209.1 hypothetical protein 2091609 4196540 RD1_2193 Roseobacter denitrificans OCh 114 hypothetical protein YP_682474.1 2091316 R 375451 CDS YP_682475.1 110679468 4196541 complement(2091815..2092756) 1 NC_008209.1 oxidative stress transcription regulator, oxyR 2092756 oxyR 4196541 oxyR Roseobacter denitrificans OCh 114 oxidative stress transcription regulator, oxyR YP_682475.1 2091815 R 375451 CDS YP_682476.1 110679469 4196542 2092862..2095042 1 NC_008209.1 catalase-peroxidase 2095042 katG 4196542 katG Roseobacter denitrificans OCh 114 catalase-peroxidase YP_682476.1 2092862 D 375451 CDS YP_682477.1 110679470 4196543 complement(2095099..2095932) 1 NC_008209.1 universal stress family protein 2095932 4196543 RD1_2196 Roseobacter denitrificans OCh 114 universal stress family protein YP_682477.1 2095099 R 375451 CDS YP_682478.1 110679471 4196544 complement(2095945..2096922) 1 NC_008209.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 2096922 panE 4196544 panE Roseobacter denitrificans OCh 114 2-dehydropantoate 2-reductase YP_682478.1 2095945 R 375451 CDS YP_682479.1 110679472 4196545 complement(2097038..2098561) 1 NC_008209.1 hypothetical protein 2098561 4196545 RD1_2199 Roseobacter denitrificans OCh 114 hypothetical protein YP_682479.1 2097038 R 375451 CDS YP_682480.1 110679473 4196546 complement(2098599..2100107) 1 NC_008209.1 hypothetical protein 2100107 4196546 RD1_2200 Roseobacter denitrificans OCh 114 hypothetical protein YP_682480.1 2098599 R 375451 CDS YP_682481.1 110679474 4196547 complement(2100120..2100611) 1 NC_008209.1 hypothetical protein 2100611 4196547 RD1_2201 Roseobacter denitrificans OCh 114 hypothetical protein YP_682481.1 2100120 R 375451 CDS YP_682482.1 110679475 4196548 complement(2100695..2101672) 1 NC_008209.1 hypothetical protein 2101672 4196548 RD1_2202 Roseobacter denitrificans OCh 114 hypothetical protein YP_682482.1 2100695 R 375451 CDS YP_682483.1 110679476 4196549 2101849..2103255 1 NC_008209.1 transcriptional regulator 2103255 4196549 RD1_2203 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682483.1 2101849 D 375451 CDS YP_682484.1 110679477 4196550 complement(2103330..2105552) 1 NC_008209.1 isocitrate dehydrogenase 2105552 icd 4196550 icd Roseobacter denitrificans OCh 114 isocitrate dehydrogenase YP_682484.1 2103330 R 375451 CDS YP_682485.1 110679478 4196552 complement(2108829..2109968) 1 NC_008209.1 hypothetical protein 2109968 4196552 RD1_2207 Roseobacter denitrificans OCh 114 hypothetical protein YP_682485.1 2108829 R 375451 CDS YP_682486.1 110679479 4196553 2110056..2110676 1 NC_008209.1 TetR family transcriptional regulator 2110676 4196553 RD1_2208 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_682486.1 2110056 D 375451 CDS YP_682487.1 110679480 4196516 2110796..2111575 1 NC_008209.1 myo-inositol-1-monophosphotase 2111575 4196516 RD1_2209 Roseobacter denitrificans OCh 114 myo-inositol-1-monophosphotase YP_682487.1 2110796 D 375451 CDS YP_682488.1 110679481 4196517 complement(2111702..2112328) 1 NC_008209.1 hypothetical protein 2112328 4196517 RD1_2210 Roseobacter denitrificans OCh 114 hypothetical protein YP_682488.1 2111702 R 375451 CDS YP_682489.1 110679482 4196518 complement(2112318..2113091) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 2113091 4196518 RD1_2211 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_682489.1 2112318 R 375451 CDS YP_682490.1 110679483 4196519 complement(2113091..2114152) 1 NC_008209.1 ribose ABC transporter permease 2114152 rbcS 4196519 rbcS Roseobacter denitrificans OCh 114 ribose ABC transporter permease YP_682490.1 2113091 R 375451 CDS YP_682491.1 110679484 4196520 complement(2114263..2115279) 1 NC_008209.1 sugar ABC transporter protein 2115279 4196520 RD1_2213 Roseobacter denitrificans OCh 114 sugar ABC transporter protein YP_682491.1 2114263 R 375451 CDS YP_682492.1 110679485 4196521 2115428..2116636 1 NC_008209.1 ROK family transcriptional regulator 2116636 frcR 4196521 frcR Roseobacter denitrificans OCh 114 ROK family transcriptional regulator YP_682492.1 2115428 D 375451 CDS YP_682493.1 110679486 4196522 2116912..2117511 1 NC_008209.1 hypothetical protein 2117511 4196522 RD1_2215 Roseobacter denitrificans OCh 114 hypothetical protein YP_682493.1 2116912 D 375451 CDS YP_682494.1 110679487 4196523 complement(2117615..2117962) 1 NC_008209.1 hypothetical protein 2117962 4196523 RD1_2216 Roseobacter denitrificans OCh 114 hypothetical protein YP_682494.1 2117615 R 375451 CDS YP_682495.1 110679488 4196524 2118094..2118237 1 NC_008209.1 hypothetical protein 2118237 4196524 RD1_2217 Roseobacter denitrificans OCh 114 hypothetical protein YP_682495.1 2118094 D 375451 CDS YP_682496.1 110679489 4196525 complement(2119485..2121842) 1 NC_008209.1 sensory box/GGDEF family protein 2121842 4196525 RD1_2218 Roseobacter denitrificans OCh 114 sensory box/GGDEF family protein YP_682496.1 2119485 R 375451 CDS YP_682497.1 110679490 4196526 2121976..2122503 1 NC_008209.1 hypothetical protein 2122503 4196526 RD1_2219 Roseobacter denitrificans OCh 114 hypothetical protein YP_682497.1 2121976 D 375451 CDS YP_682498.1 110679491 4196527 complement(2122057..2122443) 1 NC_008209.1 hypothetical protein 2122443 4196527 RD1_2220 Roseobacter denitrificans OCh 114 hypothetical protein YP_682498.1 2122057 R 375451 CDS YP_682499.1 110679492 4196528 complement(2122596..2123558) 1 NC_008209.1 oligopeptide ABC transporter ATP-binding subunit 2123558 4196528 RD1_2221 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter ATP-binding subunit YP_682499.1 2122596 R 375451 CDS YP_682500.1 110679493 4196529 complement(2123558..2124532) 1 NC_008209.1 peptide ABC transporter ATP-binding protein 2124532 4196529 RD1_2222 Roseobacter denitrificans OCh 114 peptide ABC transporter ATP-binding protein YP_682500.1 2123558 R 375451 CDS YP_682501.1 110679494 4196530 complement(2124532..2125476) 1 NC_008209.1 peptide ABC transporter permease 2125476 4196530 RD1_2223 Roseobacter denitrificans OCh 114 peptide ABC transporter permease YP_682501.1 2124532 R 375451 CDS YP_682502.1 110679495 4196531 complement(2125476..2126456) 1 NC_008209.1 peptide ABC transporter permease 2126456 4196531 RD1_2224 Roseobacter denitrificans OCh 114 peptide ABC transporter permease YP_682502.1 2125476 R 375451 CDS YP_682503.1 110679496 4196532 complement(2126507..2128072) 1 NC_008209.1 solute-binding family 5 protein 2128072 4196532 RD1_2225 Roseobacter denitrificans OCh 114 solute-binding family 5 protein YP_682503.1 2126507 R 375451 CDS YP_682504.1 110679497 4196533 complement(2128160..2129740) 1 NC_008209.1 extracellular solute-binding protein 2129740 4196533 RD1_2226 Roseobacter denitrificans OCh 114 extracellular solute-binding protein YP_682504.1 2128160 R 375451 CDS YP_682505.1 110679498 4196497 2130698..2131927 1 NC_008209.1 CP4-like integrase 2131927 4196497 RD1_2228 Roseobacter denitrificans OCh 114 CP4-like integrase YP_682505.1 2130698 D 375451 CDS YP_682506.1 110679499 4196498 2131953..2132867 1 NC_008209.1 hypothetical protein 2132867 4196498 RD1_2229 Roseobacter denitrificans OCh 114 hypothetical protein YP_682506.1 2131953 D 375451 CDS YP_682507.1 110679500 4196499 2133116..2133631 1 NC_008209.1 hypothetical protein 2133631 4196499 RD1_2231 Roseobacter denitrificans OCh 114 hypothetical protein YP_682507.1 2133116 D 375451 CDS YP_682508.1 110679501 4196500 2133684..2134709 1 NC_008209.1 phage integrase family protein 2134709 4196500 RD1_2232 Roseobacter denitrificans OCh 114 phage integrase family protein YP_682508.1 2133684 D 375451 CDS YP_682509.1 110679502 4196501 2134764..2136206 1 NC_008209.1 type I restriction enzyme methyltransferase subunit 2136206 4196501 RD1_2233 Roseobacter denitrificans OCh 114 type I restriction enzyme methyltransferase subunit YP_682509.1 2134764 D 375451 CDS YP_682510.1 110679503 4196502 2136203..2137342 1 NC_008209.1 type I restriction enzyme specificity subunit 2137342 4196502 RD1_2234 Roseobacter denitrificans OCh 114 type I restriction enzyme specificity subunit YP_682510.1 2136203 D 375451 CDS YP_682511.1 110679504 4196503 2137358..2139706 1 NC_008209.1 type I restriction enzyme subunit 2139706 4196503 RD1_2235 Roseobacter denitrificans OCh 114 type I restriction enzyme subunit YP_682511.1 2137358 D 375451 CDS YP_682512.1 110679505 4196504 complement(2140033..2140134) 1 NC_008209.1 hypothetical protein 2140134 4196504 RD1_2236 Roseobacter denitrificans OCh 114 hypothetical protein YP_682512.1 2140033 R 375451 CDS YP_682513.1 110679506 4196505 2140244..2141614 1 NC_008209.1 hypothetical protein 2141614 4196505 RD1_2237 Roseobacter denitrificans OCh 114 hypothetical protein YP_682513.1 2140244 D 375451 CDS YP_682514.1 110679507 4196506 complement(2141873..2142031) 1 NC_008209.1 hypothetical protein 2142031 4196506 RD1_2238 Roseobacter denitrificans OCh 114 hypothetical protein YP_682514.1 2141873 R 375451 CDS YP_682515.1 110679508 4196507 2142056..2143024 1 NC_008209.1 hypothetical protein 2143024 4196507 RD1_2239 Roseobacter denitrificans OCh 114 hypothetical protein YP_682515.1 2142056 D 375451 CDS YP_682516.1 110679509 4196508 2143207..2143899 1 NC_008209.1 ABC transporter ATP-binding protein 2143899 4196508 RD1_2240 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682516.1 2143207 D 375451 CDS YP_682517.1 110679510 4196509 2143896..2146268 1 NC_008209.1 permease 2146268 4196509 RD1_2241 Roseobacter denitrificans OCh 114 permease YP_682517.1 2143896 D 375451 CDS YP_682518.1 110679511 4196510 2146258..2147307 1 NC_008209.1 hypothetical protein 2147307 4196510 RD1_2242 Roseobacter denitrificans OCh 114 hypothetical protein YP_682518.1 2146258 D 375451 CDS YP_682519.1 110679512 4196511 2147387..2148535 1 NC_008209.1 acyl-CoA dehydrogenase 2148535 acdA 4196511 acdA Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_682519.1 2147387 D 375451 CDS YP_682520.1 110679513 4196512 2148669..2149796 1 NC_008209.1 chemotaxis response regulator protein-glutamate methylesterase 2149796 cheB 4196512 cheB Roseobacter denitrificans OCh 114 chemotaxis response regulator protein-glutamate methylesterase YP_682520.1 2148669 D 375451 CDS YP_682521.1 110679514 4196513 2149793..2150308 1 NC_008209.1 chemotaxis protein CheD 2150308 cheD 4196513 cheD Roseobacter denitrificans OCh 114 chemotaxis protein CheD YP_682521.1 2149793 D 375451 CDS YP_682522.1 110679515 4196514 complement(2151207..2152064) 1 NC_008209.1 integrase catalytic subunit 2152064 4196514 RD1_2246 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_682522.1 2151207 R 375451 CDS YP_682523.1 110679516 4196480 complement(2153007..2153933) 1 NC_008209.1 metallo-beta-lactamase family protein 2153933 4196480 RD1_2249 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_682523.1 2153007 R 375451 CDS YP_682524.1 110679517 4196481 2153976..2155301 1 NC_008209.1 sensor histidine kinase 2155301 4196481 RD1_2250 Roseobacter denitrificans OCh 114 sensor histidine kinase YP_682524.1 2153976 D 375451 CDS YP_682525.1 110679518 4196483 2155570..2156616 1 NC_008209.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2156616 4196483 RD1_2252 Roseobacter denitrificans OCh 114 phosphoribosylaminoimidazole synthetase YP_682525.1 2155570 D 375451 CDS YP_682526.1 110679519 4196484 2156613..2157209 1 NC_008209.1 phosphoribosylglycinamide formyltransferase 2157209 4196484 RD1_2253 Roseobacter denitrificans OCh 114 phosphoribosylglycinamide formyltransferase YP_682526.1 2156613 D 375451 CDS YP_682527.1 110679520 4196485 2157298..2158461 1 NC_008209.1 ribonuclease D 2158461 rnd 4196485 rnd Roseobacter denitrificans OCh 114 ribonuclease D YP_682527.1 2157298 D 375451 CDS YP_682528.1 110679521 4196486 complement(2158470..2158976) 1 NC_008209.1 lipoprotein 2158976 4196486 RD1_2255 Roseobacter denitrificans OCh 114 lipoprotein YP_682528.1 2158470 R 375451 CDS YP_682529.1 110679522 4196487 2159114..2159524 1 NC_008209.1 hypothetical protein 2159524 4196487 RD1_2256 Roseobacter denitrificans OCh 114 hypothetical protein YP_682529.1 2159114 D 375451 CDS YP_682530.1 110679523 4196488 complement(2159531..2160169) 1 NC_008209.1 hypothetical protein 2160169 4196488 RD1_2257 Roseobacter denitrificans OCh 114 hypothetical protein YP_682530.1 2159531 R 375451 CDS YP_682531.1 110679524 4196489 complement(2160211..2160909) 1 NC_008209.1 dimethylamine corrinoid protein 2160909 mtbC 4196489 mtbC Roseobacter denitrificans OCh 114 dimethylamine corrinoid protein YP_682531.1 2160211 R 375451 CDS YP_682532.1 110679525 4196490 complement(2161087..2162109) 1 NC_008209.1 catalyzes the formation of methionine from L-homocysteine and S-adenosyl-L-methionine; methionine synthase I 2162109 4196490 RD1_2260 Roseobacter denitrificans OCh 114 methionine synthase I YP_682532.1 2161087 R 375451 CDS YP_682533.1 110679526 4196491 complement(2162282..2162596) 1 NC_008209.1 hypothetical protein 2162596 4196491 RD1_2261 Roseobacter denitrificans OCh 114 hypothetical protein YP_682533.1 2162282 R 375451 CDS YP_682534.1 110679527 4196492 2162753..2163514 1 NC_008209.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2163514 purC 4196492 purC Roseobacter denitrificans OCh 114 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_682534.1 2162753 D 375451 CDS YP_682535.1 110679528 4196493 2163527..2163787 1 NC_008209.1 phosphoribosylformylglycinamidine synthase, PurS protein 2163787 4196493 RD1_2263 Roseobacter denitrificans OCh 114 phosphoribosylformylglycinamidine synthase, PurS protein YP_682535.1 2163527 D 375451 CDS YP_682536.1 110679529 4196494 2163787..2164455 1 NC_008209.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2164455 4196494 RD1_2264 Roseobacter denitrificans OCh 114 phosphoribosylformylglycinamidine synthase I YP_682536.1 2163787 D 375451 CDS YP_682537.1 110679530 4196495 2164550..2166253 1 NC_008209.1 C4-dicarboxylate transport sensor protein dctB 2166253 dctB 4196495 dctB Roseobacter denitrificans OCh 114 C4-dicarboxylate transport sensor protein dctB YP_682537.1 2164550 D 375451 CDS YP_682538.1 110679531 4196496 2166257..2167591 1 NC_008209.1 C4-dicarboxylate transport transcriptional regulatory protein DctD 2167591 dctD 4196496 dctD Roseobacter denitrificans OCh 114 C4-dicarboxylate transport transcriptional regulatory protein DctD YP_682538.1 2166257 D 375451 CDS YP_682539.1 110679532 4196461 2168060..2170819 1 NC_008209.1 ribonuclease E 2170819 rne 4196461 rne Roseobacter denitrificans OCh 114 ribonuclease E YP_682539.1 2168060 D 375451 CDS YP_682540.1 110679533 4196462 complement(2170883..2171113) 1 NC_008209.1 hypothetical protein 2171113 4196462 RD1_2268 Roseobacter denitrificans OCh 114 hypothetical protein YP_682540.1 2170883 R 375451 CDS YP_682541.1 110679534 4196463 2171206..2171958 1 NC_008209.1 cytochrome c-type biogenesis protein CcdA 2171958 ccdA 4196463 ccdA Roseobacter denitrificans OCh 114 cytochrome c-type biogenesis protein CcdA YP_682541.1 2171206 D 375451 CDS YP_682542.1 110679535 4196464 2172092..2172964 1 NC_008209.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2172964 fda 4196464 fda Roseobacter denitrificans OCh 114 fructose-1,6-bisphosphate aldolase YP_682542.1 2172092 D 375451 CDS YP_682543.1 110679536 4196465 complement(2172949..2173191) 1 NC_008209.1 hypothetical protein 2173191 4196465 RD1_2271 Roseobacter denitrificans OCh 114 hypothetical protein YP_682543.1 2172949 R 375451 CDS YP_682544.1 110679537 4196466 complement(2173188..2173364) 1 NC_008209.1 hypothetical protein 2173364 4196466 RD1_2272 Roseobacter denitrificans OCh 114 hypothetical protein YP_682544.1 2173188 R 375451 CDS YP_682545.1 110679538 4196467 complement(2173361..2174752) 1 NC_008209.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2174752 fumC 4196467 fumC Roseobacter denitrificans OCh 114 fumarate hydratase YP_682545.1 2173361 R 375451 CDS YP_682546.1 110679539 4196468 2174807..2174935 1 NC_008209.1 hypothetical protein 2174935 4196468 RD1_2274 Roseobacter denitrificans OCh 114 hypothetical protein YP_682546.1 2174807 D 375451 CDS YP_682547.1 110679540 4196469 2174932..2175486 1 NC_008209.1 hypothetical protein 2175486 4196469 RD1_2275 Roseobacter denitrificans OCh 114 hypothetical protein YP_682547.1 2174932 D 375451 CDS YP_682548.1 110679541 4196470 complement(2175576..2175983) 1 NC_008209.1 hypothetical protein 2175983 4196470 RD1_2277 Roseobacter denitrificans OCh 114 hypothetical protein YP_682548.1 2175576 R 375451 CDS YP_682549.1 110679542 4196471 complement(2176075..2177322) 1 NC_008209.1 chromate transporter 2177322 4196471 RD1_2278 Roseobacter denitrificans OCh 114 chromate transporter YP_682549.1 2176075 R 375451 CDS YP_682550.1 110679543 4196472 complement(2177446..2177874) 1 NC_008209.1 hypothetical protein 2177874 4196472 RD1_2279 Roseobacter denitrificans OCh 114 hypothetical protein YP_682550.1 2177446 R 375451 CDS YP_682551.1 110679544 4196474 complement(2178437..2178790) 1 NC_008209.1 hypothetical protein 2178790 4196474 RD1_2281 Roseobacter denitrificans OCh 114 hypothetical protein YP_682551.1 2178437 R 375451 CDS YP_682552.1 110679545 4196475 complement(2178851..2179360) 1 NC_008209.1 hypothetical protein 2179360 4196475 RD1_2282 Roseobacter denitrificans OCh 114 hypothetical protein YP_682552.1 2178851 R 375451 CDS YP_682553.1 110679546 4196476 complement(2179425..2180183) 1 NC_008209.1 GntR family transcriptional regulator 2180183 4196476 RD1_2283 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_682553.1 2179425 R 375451 CDS YP_682554.1 110679547 4196477 2180255..2181043 1 NC_008209.1 hypothetical protein 2181043 4196477 RD1_2284 Roseobacter denitrificans OCh 114 hypothetical protein YP_682554.1 2180255 D 375451 CDS YP_682555.1 110679548 4196478 2181047..2181754 1 NC_008209.1 hypothetical protein 2181754 4196478 RD1_2286 Roseobacter denitrificans OCh 114 hypothetical protein YP_682555.1 2181047 D 375451 CDS YP_682556.1 110679549 4196442 2181751..2182260 1 NC_008209.1 DinB family protein 2182260 4196442 RD1_2287 Roseobacter denitrificans OCh 114 DinB family protein YP_682556.1 2181751 D 375451 CDS YP_682557.1 110679550 4196443 2182262..2183365 1 NC_008209.1 DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene; dimethyl sulfoniopropionate demethylase 2183365 dmdA 4196443 dmdA Roseobacter denitrificans OCh 114 dimethyl sulfoniopropionate demethylase YP_682557.1 2182262 D 375451 CDS YP_682558.1 110679551 4196444 2183446..2184438 1 NC_008209.1 oxidoreductase 2184438 4196444 RD1_2290 Roseobacter denitrificans OCh 114 oxidoreductase YP_682558.1 2183446 D 375451 CDS YP_682559.1 110679552 4196445 complement(2184559..2186397) 1 NC_008209.1 glycine betaine transporter OpuD 2186397 opuD 4196445 opuD Roseobacter denitrificans OCh 114 glycine betaine transporter OpuD YP_682559.1 2184559 R 375451 CDS YP_682560.1 110679553 4196446 2186716..2188389 1 NC_008209.1 glycine betaine transporter 2188389 4196446 RD1_2292 Roseobacter denitrificans OCh 114 glycine betaine transporter YP_682560.1 2186716 D 375451 CDS YP_682561.1 110679554 4196447 2188512..2189735 1 NC_008209.1 aminotransferase 2189735 4196447 RD1_2293 Roseobacter denitrificans OCh 114 aminotransferase YP_682561.1 2188512 D 375451 CDS YP_682562.1 110679555 4196448 2189803..2191221 1 NC_008209.1 deoxyribodipyrimidine photolyase 2191221 phrB 4196448 phrB Roseobacter denitrificans OCh 114 deoxyribodipyrimidine photolyase YP_682562.1 2189803 D 375451 CDS YP_682563.1 110679556 4196449 2191301..2192509 1 NC_008209.1 cyclopropane-fatty-acyl-phospholipid synthase 2192509 cfa 4196449 cfa Roseobacter denitrificans OCh 114 cyclopropane-fatty-acyl-phospholipid synthase YP_682563.1 2191301 D 375451 CDS YP_682564.1 110679557 4196450 2192635..2193075 1 NC_008209.1 tellurite resistance protein TrgA 2193075 trgA 4196450 trgA Roseobacter denitrificans OCh 114 tellurite resistance protein TrgA YP_682564.1 2192635 D 375451 CDS YP_682565.1 110679558 4196451 2193092..2194195 1 NC_008209.1 tellurite resistance protein TrgB 2194195 trgB 4196451 trgB Roseobacter denitrificans OCh 114 tellurite resistance protein TrgB YP_682565.1 2193092 D 375451 CDS YP_682566.1 110679559 4196452 2194307..2195344 1 NC_008209.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2195344 cysB 4196452 cysB Roseobacter denitrificans OCh 114 cysteine synthase A YP_682566.1 2194307 D 375451 CDS YP_682567.1 110679560 4196453 2195341..2197677 1 NC_008209.1 mechanosensitive ion channel protein 2197677 4196453 RD1_2300 Roseobacter denitrificans OCh 114 mechanosensitive ion channel protein YP_682567.1 2195341 D 375451 CDS YP_682568.1 110679561 4196455 complement(2198082..2198546) 1 NC_008209.1 cytochrome c family protein 2198546 4196455 RD1_2302 Roseobacter denitrificans OCh 114 cytochrome c family protein YP_682568.1 2198082 R 375451 CDS YP_682569.1 110679562 4196456 complement(2198543..2201059) 1 NC_008209.1 copper-translocating P-type ATPase 2201059 4196456 RD1_2303 Roseobacter denitrificans OCh 114 copper-translocating P-type ATPase YP_682569.1 2198543 R 375451 CDS YP_682570.1 110679563 4196457 2201200..2201601 1 NC_008209.1 HTH-type transcriptional regulator hmrR 2201601 hmrR 4196457 hmrR Roseobacter denitrificans OCh 114 HTH-type transcriptional regulator hmrR YP_682570.1 2201200 D 375451 CDS YP_682571.1 110679564 4196458 2201710..2201865 1 NC_008209.1 hypothetical protein 2201865 4196458 RD1_2305 Roseobacter denitrificans OCh 114 hypothetical protein YP_682571.1 2201710 D 375451 CDS YP_682572.1 110679565 4196459 2201862..2203250 1 NC_008209.1 multicopper oxidase 2203250 4196459 RD1_2306 Roseobacter denitrificans OCh 114 multicopper oxidase YP_682572.1 2201862 D 375451 CDS YP_682573.1 110679566 4196460 2203289..2203750 1 NC_008209.1 hypothetical protein 2203750 4196460 RD1_2307 Roseobacter denitrificans OCh 114 hypothetical protein YP_682573.1 2203289 D 375451 CDS YP_682574.1 110679567 4196423 complement(2203904..2205004) 1 NC_008209.1 oxidoreductase 2205004 4196423 RD1_2308 Roseobacter denitrificans OCh 114 oxidoreductase YP_682574.1 2203904 R 375451 CDS YP_682575.1 110679568 4196424 complement(2205016..2205693) 1 NC_008209.1 transcriptional regulator 2205693 4196424 RD1_2309 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682575.1 2205016 R 375451 CDS YP_682576.1 110679569 4196425 2205822..2206976 1 NC_008209.1 methanesulfonate sulfonatase 2206976 ssuD 4196425 ssuD Roseobacter denitrificans OCh 114 methanesulfonate sulfonatase YP_682576.1 2205822 D 375451 CDS YP_682577.1 110679570 4196426 2206976..2207866 1 NC_008209.1 oxidoreductase 2207866 4196426 RD1_2311 Roseobacter denitrificans OCh 114 oxidoreductase YP_682577.1 2206976 D 375451 CDS YP_682578.1 110679571 4196427 2207896..2208405 1 NC_008209.1 nitrilotriacetate monooxygenase component B 2208405 ntaB 4196427 ntaB Roseobacter denitrificans OCh 114 nitrilotriacetate monooxygenase component B YP_682578.1 2207896 D 375451 CDS YP_682579.1 110679572 4196428 2208466..2209056 1 NC_008209.1 C4-dicarboxylate transport system, permease small protein 2209056 4196428 RD1_2313 Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, permease small protein YP_682579.1 2208466 D 375451 CDS YP_682580.1 110679573 4196429 2209057..2210346 1 NC_008209.1 TRAP-type transporter DctM subunit 2210346 dctM 4196429 dctM Roseobacter denitrificans OCh 114 TRAP-type transporter DctM subunit YP_682580.1 2209057 D 375451 CDS YP_682581.1 110679574 4196430 2210372..2211430 1 NC_008209.1 TRAP-type C4-dicarboxylate transport system protein 2211430 4196430 RD1_2315 Roseobacter denitrificans OCh 114 TRAP-type C4-dicarboxylate transport system protein YP_682581.1 2210372 D 375451 CDS YP_682582.1 110679575 4196431 complement(2211462..2211932) 1 NC_008209.1 hypothetical protein 2211932 4196431 RD1_2316 Roseobacter denitrificans OCh 114 hypothetical protein YP_682582.1 2211462 R 375451 CDS YP_682583.1 110679576 4196433 complement(2213309..2214622) 1 NC_008209.1 beta-glucosidase A 2214622 bglA 4196433 bglA Roseobacter denitrificans OCh 114 beta-glucosidase A YP_682583.1 2213309 R 375451 CDS YP_682584.1 110679577 4196434 complement(2214636..2215664) 1 NC_008209.1 transcriptional regulator 2215664 4196434 RD1_2320 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682584.1 2214636 R 375451 CDS YP_682585.1 110679578 4196435 2215677..2215769 1 NC_008209.1 hypothetical protein 2215769 4196435 RD1_2321 Roseobacter denitrificans OCh 114 hypothetical protein YP_682585.1 2215677 D 375451 CDS YP_682586.1 110679579 4196436 2215922..2217274 1 NC_008209.1 alpha-glucoside ABC transporter substrate-binding protein 2217274 aglE 4196436 aglE Roseobacter denitrificans OCh 114 alpha-glucoside ABC transporter substrate-binding protein YP_682586.1 2215922 D 375451 CDS YP_682587.1 110679580 4196437 2217350..2218330 1 NC_008209.1 alpha-glucoside ABC transporter permease 2218330 aglF 4196437 aglF Roseobacter denitrificans OCh 114 alpha-glucoside ABC transporter permease YP_682587.1 2217350 D 375451 CDS YP_682588.1 110679581 4196439 2219498..2221150 1 NC_008209.1 alpha-glucosidase 2221150 aglA 4196439 aglA Roseobacter denitrificans OCh 114 alpha-glucosidase YP_682588.1 2219498 D 375451 CDS YP_682589.1 110679582 4196440 2221177..2222274 1 NC_008209.1 alpha-glucoside transporter ATP-binding protein AglK 2222274 aglK 4196440 aglK Roseobacter denitrificans OCh 114 alpha-glucoside transporter ATP-binding protein AglK YP_682589.1 2221177 D 375451 CDS YP_682590.1 110679583 4196441 2222427..2222822 1 NC_008209.1 hypothetical protein 2222822 4196441 RD1_2328 Roseobacter denitrificans OCh 114 hypothetical protein YP_682590.1 2222427 D 375451 CDS YP_682591.1 110679584 4196403 2222981..2224795 1 NC_008209.1 outer membrane protein 2224795 4196403 RD1_2329 Roseobacter denitrificans OCh 114 outer membrane protein YP_682591.1 2222981 D 375451 CDS YP_682592.1 110679585 4196404 2224792..2228409 1 NC_008209.1 hypothetical protein 2228409 4196404 RD1_2330 Roseobacter denitrificans OCh 114 hypothetical protein YP_682592.1 2224792 D 375451 CDS YP_682593.1 110679586 4196405 complement(2228403..2228924) 1 NC_008209.1 nitrilotriacetate monooxygenase component B 2228924 ntaB 4196405 ntaB Roseobacter denitrificans OCh 114 nitrilotriacetate monooxygenase component B YP_682593.1 2228403 R 375451 CDS YP_682594.1 110679587 4196406 complement(2229120..2231090) 1 NC_008209.1 acetyl-coenzyme A synthetase 2231090 acsA 4196406 acsA Roseobacter denitrificans OCh 114 acetyl-coenzyme A synthetase YP_682594.1 2229120 R 375451 CDS YP_682595.1 110679588 4196407 2231460..2232476 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctP 2232476 4196407 RD1_2333 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctP YP_682595.1 2231460 D 375451 CDS YP_682596.1 110679589 4196408 2232547..2233176 1 NC_008209.1 TRAP dicarboxylate transporter DctQ subunit 2233176 4196408 RD1_2334 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter DctQ subunit YP_682596.1 2232547 D 375451 CDS YP_682597.1 110679590 4196409 2233176..2234576 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 2234576 4196409 RD1_2335 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_682597.1 2233176 D 375451 CDS YP_682598.1 110679591 4196410 complement(2234676..2235851) 1 NC_008209.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2235851 pobA 4196410 pobA Roseobacter denitrificans OCh 114 4-hydroxybenzoate 3-monooxygenase YP_682598.1 2234676 R 375451 CDS YP_682599.1 110679592 4196411 2235978..2237336 1 NC_008209.1 aminotransferase 2237336 4196411 RD1_2337 Roseobacter denitrificans OCh 114 aminotransferase YP_682599.1 2235978 D 375451 CDS YP_682600.1 110679593 4196412 complement(2237337..2238092) 1 NC_008209.1 oxidoreductase 2238092 4196412 RD1_2338 Roseobacter denitrificans OCh 114 oxidoreductase YP_682600.1 2237337 R 375451 CDS YP_682601.1 110679594 4196413 2238379..2238483 1 NC_008209.1 hypothetical protein 2238483 4196413 RD1_2339 Roseobacter denitrificans OCh 114 hypothetical protein YP_682601.1 2238379 D 375451 CDS YP_682602.1 110679595 4196414 2238517..2239008 1 NC_008209.1 acetyltransferase 2239008 4196414 RD1_2340 Roseobacter denitrificans OCh 114 acetyltransferase YP_682602.1 2238517 D 375451 CDS YP_682603.1 110679596 4196415 complement(2239302..2240342) 1 NC_008209.1 glycosyltransferase 2240342 4196415 RD1_2341 Roseobacter denitrificans OCh 114 glycosyltransferase YP_682603.1 2239302 R 375451 CDS YP_682604.1 110679597 4196416 complement(2240339..2241871) 1 NC_008209.1 ABC transporter permease 2241871 4196416 RD1_2342 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682604.1 2240339 R 375451 CDS YP_682605.1 110679598 4196417 complement(2241872..2242618) 1 NC_008209.1 ABC transporter ATP-binding protein 2242618 4196417 RD1_2343 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682605.1 2241872 R 375451 CDS YP_682606.1 110679599 4196418 complement(2242625..2243563) 1 NC_008209.1 hypothetical protein 2243563 4196418 RD1_2344 Roseobacter denitrificans OCh 114 hypothetical protein YP_682606.1 2242625 R 375451 CDS YP_682607.1 110679600 4196419 complement(2243617..2244519) 1 NC_008209.1 hypothetical protein 2244519 4196419 RD1_2345 Roseobacter denitrificans OCh 114 hypothetical protein YP_682607.1 2243617 R 375451 CDS YP_682608.1 110679601 4196420 complement(2244519..2246132) 1 NC_008209.1 hypothetical protein 2246132 4196420 RD1_2346 Roseobacter denitrificans OCh 114 hypothetical protein YP_682608.1 2244519 R 375451 CDS YP_682609.1 110679602 4196421 complement(2246132..2246716) 1 NC_008209.1 hypothetical protein 2246716 4196421 RD1_2347 Roseobacter denitrificans OCh 114 hypothetical protein YP_682609.1 2246132 R 375451 CDS YP_682610.1 110679603 4196422 complement(2246938..2247042) 1 NC_008209.1 hypothetical protein 2247042 4196422 RD1_2348 Roseobacter denitrificans OCh 114 hypothetical protein YP_682610.1 2246938 R 375451 CDS YP_682611.1 110679604 4196384 2246989..2247108 1 NC_008209.1 hypothetical protein 2247108 4196384 RD1_2349 Roseobacter denitrificans OCh 114 hypothetical protein YP_682611.1 2246989 D 375451 CDS YP_682612.1 110679605 4196385 2247138..2247722 1 NC_008209.1 hypothetical protein 2247722 4196385 RD1_2350 Roseobacter denitrificans OCh 114 hypothetical protein YP_682612.1 2247138 D 375451 CDS YP_682613.1 110679606 4196386 2247801..2247950 1 NC_008209.1 hypothetical protein 2247950 4196386 RD1_2351 Roseobacter denitrificans OCh 114 hypothetical protein YP_682613.1 2247801 D 375451 CDS YP_682614.1 110679607 4196387 complement(2248077..2250350) 1 NC_008209.1 hypothetical protein 2250350 4196387 RD1_2352 Roseobacter denitrificans OCh 114 hypothetical protein YP_682614.1 2248077 R 375451 CDS YP_682615.1 110679608 4196388 2250779..2251654 1 NC_008209.1 hypothetical protein 2251654 4196388 RD1_2353 Roseobacter denitrificans OCh 114 hypothetical protein YP_682615.1 2250779 D 375451 CDS YP_682616.1 110679609 4196389 complement(2251724..2251996) 1 NC_008209.1 glutaredoxin 3 2251996 grxC 4196389 grxC Roseobacter denitrificans OCh 114 glutaredoxin 3 YP_682616.1 2251724 R 375451 CDS YP_682617.1 110679610 4196390 complement(2252048..2252548) 1 NC_008209.1 hypothetical protein 2252548 4196390 RD1_2355 Roseobacter denitrificans OCh 114 hypothetical protein YP_682617.1 2252048 R 375451 CDS YP_682618.1 110679611 4196391 2252686..2253282 1 NC_008209.1 TetR family transcriptional regulator 2253282 4196391 RD1_2356 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_682618.1 2252686 D 375451 CDS YP_682619.1 110679612 4196392 2253564..2254049 1 NC_008209.1 hypothetical protein 2254049 4196392 RD1_2357 Roseobacter denitrificans OCh 114 hypothetical protein YP_682619.1 2253564 D 375451 CDS YP_682620.1 110679613 4196393 complement(2254077..2255699) 1 NC_008209.1 mechanosensitive channel protein 2255699 4196393 RD1_2358 Roseobacter denitrificans OCh 114 mechanosensitive channel protein YP_682620.1 2254077 R 375451 CDS YP_682621.1 110679614 4196394 complement(2255814..2256305) 1 NC_008209.1 MarR family transcriptional regulator 2256305 4196394 RD1_2359 Roseobacter denitrificans OCh 114 MarR family transcriptional regulator YP_682621.1 2255814 R 375451 CDS YP_682622.1 110679615 4196395 complement(2256542..2257612) 1 NC_008209.1 vanillate O-demethylase oxygenase 2257612 van 4196395 van Roseobacter denitrificans OCh 114 vanillate O-demethylase oxygenase YP_682622.1 2256542 R 375451 CDS YP_682623.1 110679616 4196396 complement(2257808..2258251) 1 NC_008209.1 cytosine deaminase 2258251 cdd 4196396 cdd Roseobacter denitrificans OCh 114 cytosine deaminase YP_682623.1 2257808 R 375451 CDS YP_682624.1 110679617 4196397 complement(2258257..2259150) 1 NC_008209.1 hypothetical protein 2259150 4196397 RD1_2363 Roseobacter denitrificans OCh 114 hypothetical protein YP_682624.1 2258257 R 375451 CDS YP_682625.1 110679618 4196398 complement(2259155..2260240) 1 NC_008209.1 spermidine/putrescine ABC transporter ATP-binding protein 2260240 4196398 RD1_2364 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter ATP-binding protein YP_682625.1 2259155 R 375451 CDS YP_682626.1 110679619 4196399 complement(2260237..2261037) 1 NC_008209.1 spermidine/putrescine transport system, permease 2261037 potC 4196399 potC Roseobacter denitrificans OCh 114 spermidine/putrescine transport system, permease YP_682626.1 2260237 R 375451 CDS YP_682627.1 110679620 4196400 complement(2261034..2261897) 1 NC_008209.1 putrescine ABC transporter permease 2261897 potH 4196400 potH Roseobacter denitrificans OCh 114 putrescine ABC transporter permease YP_682627.1 2261034 R 375451 CDS YP_682628.1 110679621 4196401 complement(2261969..2263108) 1 NC_008209.1 spermidine/putrescine ABC transporter substrate-binding protein 2263108 4196401 RD1_2369 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter substrate-binding protein YP_682628.1 2261969 R 375451 CDS YP_682629.1 110679622 4196402 complement(2263256..2264149) 1 NC_008209.1 LysR family transcriptional regulator 2264149 4196402 RD1_2370 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_682629.1 2263256 R 375451 CDS YP_682630.1 110679623 4196364 2264189..2264314 1 NC_008209.1 hypothetical protein 2264314 4196364 RD1_2371 Roseobacter denitrificans OCh 114 hypothetical protein YP_682630.1 2264189 D 375451 CDS YP_682631.1 110679624 4196365 complement(2264331..2264951) 1 NC_008209.1 adenine phosphoribosyltransferase 2264951 apt 4196365 apt Roseobacter denitrificans OCh 114 adenine phosphoribosyltransferase YP_682631.1 2264331 R 375451 CDS YP_682632.1 110679625 4196366 complement(2265879..2266667) 1 NC_008209.1 hypothetical protein 2266667 4196366 RD1_2376 Roseobacter denitrificans OCh 114 hypothetical protein YP_682632.1 2265879 R 375451 CDS YP_682633.1 110679626 4196367 complement(2266664..2267017) 1 NC_008209.1 ferredoxin 2267017 petF 4196367 petF Roseobacter denitrificans OCh 114 ferredoxin YP_682633.1 2266664 R 375451 CDS YP_682634.1 110679627 4196368 complement(2267077..2268441) 1 NC_008209.1 selenium binding protein 2268441 sbp 4196368 sbp Roseobacter denitrificans OCh 114 selenium binding protein YP_682634.1 2267077 R 375451 CDS YP_682635.1 110679628 4196369 complement(2268454..2269278) 1 NC_008209.1 IclR family transcriptional regulator 2269278 4196369 RD1_2379 Roseobacter denitrificans OCh 114 IclR family transcriptional regulator YP_682635.1 2268454 R 375451 CDS YP_682636.1 110679629 4196370 complement(2269554..2270594) 1 NC_008209.1 sugar ABC transporter substrate-binding protein 2270594 4196370 RD1_2380 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_682636.1 2269554 R 375451 CDS YP_682637.1 110679630 4196371 complement(2270620..2271630) 1 NC_008209.1 ribose ABC transporter permease 2271630 rbsC 4196371 rbsC Roseobacter denitrificans OCh 114 ribose ABC transporter permease YP_682637.1 2270620 R 375451 CDS YP_682638.1 110679631 4196372 complement(2271627..2273144) 1 NC_008209.1 sugar uptake ABC transporter ATP-binding protein 2273144 4196372 RD1_2382 Roseobacter denitrificans OCh 114 sugar uptake ABC transporter ATP-binding protein YP_682638.1 2271627 R 375451 CDS YP_682639.1 110679632 4196373 2273277..2274536 1 NC_008209.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 2274536 mtnK 4196373 mtnK Roseobacter denitrificans OCh 114 methylthioribose kinase YP_682639.1 2273277 D 375451 CDS YP_682640.1 110679633 4196374 2274533..2275636 1 NC_008209.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 2275636 mtnA 4196374 mtnA Roseobacter denitrificans OCh 114 methylthioribose-1-phosphate isomerase YP_682640.1 2274533 D 375451 CDS YP_682641.1 110679634 4196375 2275640..2276650 1 NC_008209.1 transcriptional regulator 2276650 4196375 RD1_2385 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682641.1 2275640 D 375451 CDS YP_682642.1 110679635 4196376 complement(2276673..2276921) 1 NC_008209.1 hypothetical protein 2276921 4196376 RD1_2386 Roseobacter denitrificans OCh 114 hypothetical protein YP_682642.1 2276673 R 375451 CDS YP_682643.1 110679636 4196377 complement(2276933..2278126) 1 NC_008209.1 phosphonate metabolism protein PhnM 2278126 phnM 4196377 phnM Roseobacter denitrificans OCh 114 phosphonate metabolism protein PhnM YP_682643.1 2276933 R 375451 CDS YP_682644.1 110679637 4196378 complement(2278410..2278970) 1 NC_008209.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 2278970 phnN 4196378 phnN Roseobacter denitrificans OCh 114 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN YP_682644.1 2278410 R 375451 CDS YP_682645.1 110679638 4196379 complement(2278967..2279650) 1 NC_008209.1 phosphonate C-P lyase system protein PhnL 2279650 phnL 4196379 phnL Roseobacter denitrificans OCh 114 phosphonate C-P lyase system protein PhnL YP_682645.1 2278967 R 375451 CDS YP_682646.1 110679639 4196380 complement(2279654..2280424) 1 NC_008209.1 phosphonate C-P lyase system protein PhnK 2280424 phnK 4196380 phnK Roseobacter denitrificans OCh 114 phosphonate C-P lyase system protein PhnK YP_682646.1 2279654 R 375451 CDS YP_682647.1 110679640 4196381 complement(2280421..2281287) 1 NC_008209.1 phosphonate metabolism protein PhnJ 2281287 4196381 RD1_2391 Roseobacter denitrificans OCh 114 phosphonate metabolism protein PhnJ YP_682647.1 2280421 R 375451 CDS YP_682648.1 110679641 4196382 complement(2281284..2282372) 1 NC_008209.1 phosphonate metabolism protein 2282372 phnI 4196382 phnI Roseobacter denitrificans OCh 114 phosphonate metabolism protein YP_682648.1 2281284 R 375451 CDS YP_682649.1 110679642 4196383 complement(2282374..2282970) 1 NC_008209.1 carbon-phosphorus lyase complex subunit 2282970 phnH 4196383 phnH Roseobacter denitrificans OCh 114 carbon-phosphorus lyase complex subunit YP_682649.1 2282374 R 375451 CDS YP_682650.1 110679643 4196345 complement(2282970..2283425) 1 NC_008209.1 alkylphosphonate utilization protein PhnG 2283425 phnG 4196345 phnG Roseobacter denitrificans OCh 114 alkylphosphonate utilization protein PhnG YP_682650.1 2282970 R 375451 CDS YP_682651.1 110679644 4196346 2283558..2284226 1 NC_008209.1 phosphonates metabolism transcriptional regulator PhnF 2284226 phnF 4196346 phnF Roseobacter denitrificans OCh 114 phosphonates metabolism transcriptional regulator PhnF YP_682651.1 2283558 D 375451 CDS YP_682652.1 110679645 4196347 complement(2284234..2284374) 1 NC_008209.1 hypothetical protein 2284374 4196347 RD1_2396 Roseobacter denitrificans OCh 114 hypothetical protein YP_682652.1 2284234 R 375451 CDS YP_682653.1 110679646 4196348 2284355..2285203 1 NC_008209.1 arsenate reductase 2285203 arsC 4196348 arsC Roseobacter denitrificans OCh 114 arsenate reductase YP_682653.1 2284355 D 375451 CDS YP_682654.1 110679647 4196349 2285200..2286198 1 NC_008209.1 glyceraldehyde-3-phosphate dehydrogenase 2286198 gap 4196349 gap Roseobacter denitrificans OCh 114 glyceraldehyde-3-phosphate dehydrogenase YP_682654.1 2285200 D 375451 CDS YP_682655.1 110679648 4196350 2286195..2287466 1 NC_008209.1 membrane transporter 2287466 4196350 RD1_2399 Roseobacter denitrificans OCh 114 membrane transporter YP_682655.1 2286195 D 375451 CDS YP_682656.1 110679649 4196351 complement(2287586..2288215) 1 NC_008209.1 acetyltransferase 2288215 4196351 RD1_2400 Roseobacter denitrificans OCh 114 acetyltransferase YP_682656.1 2287586 R 375451 CDS YP_682657.1 110679650 4196352 complement(2288281..2290470) 1 NC_008209.1 phosphonate ABC transporter permease 2290470 phnE 4196352 phnE Roseobacter denitrificans OCh 114 phosphonate ABC transporter permease YP_682657.1 2288281 R 375451 CDS YP_682658.1 110679651 4196353 complement(2290535..2291446) 1 NC_008209.1 phosphonate ABC transporter substrate-binding protein 2291446 4196353 RD1_2402 Roseobacter denitrificans OCh 114 phosphonate ABC transporter substrate-binding protein YP_682658.1 2290535 R 375451 CDS YP_682659.1 110679652 4196354 complement(2291541..2292356) 1 NC_008209.1 phosphonate ABC transporter ATP-binding protein 2292356 phnC 4196354 phnC Roseobacter denitrificans OCh 114 phosphonate ABC transporter ATP-binding protein YP_682659.1 2291541 R 375451 CDS YP_682660.1 110679653 4196355 complement(2293087..2294484) 1 NC_008209.1 catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; dihydropyrimidinase 2294484 hydA 4196355 hydA Roseobacter denitrificans OCh 114 dihydropyrimidinase YP_682660.1 2293087 R 375451 CDS YP_682661.1 110679654 4196356 complement(2294481..2295224) 1 NC_008209.1 hydantoin racemase 2295224 hyuE 4196356 hyuE Roseobacter denitrificans OCh 114 hydantoin racemase YP_682661.1 2294481 R 375451 CDS YP_682662.1 110679655 4196357 complement(2295226..2296563) 1 NC_008209.1 glutamyl-tRNA(Gln) amidotransferase, subunit A 2296563 gatA 4196357 gatA Roseobacter denitrificans OCh 114 glutamyl-tRNA(Gln) amidotransferase, subunit A YP_682662.1 2295226 R 375451 CDS YP_682663.1 110679656 4196358 complement(2296684..2297484) 1 NC_008209.1 ABC transporter permease 2297484 4196358 RD1_2407 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682663.1 2296684 R 375451 CDS YP_682664.1 110679657 4196359 complement(2297481..2298311) 1 NC_008209.1 spermidine/putrescine ABC transporter permease 2298311 4196359 RD1_2408 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter permease YP_682664.1 2297481 R 375451 CDS YP_682665.1 110679658 4196360 complement(2298308..2299393) 1 NC_008209.1 spermidine/putrescine ABC transporter ATP-binding protein 2299393 potA 4196360 potA Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter ATP-binding protein YP_682665.1 2298308 R 375451 CDS YP_682666.1 110679659 4196361 complement(2299398..2300453) 1 NC_008209.1 spermidine/putrescine ABC transporter substrate-binding protein 2300453 4196361 RD1_2410 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter substrate-binding protein YP_682666.1 2299398 R 375451 CDS YP_682667.1 110679660 4196362 complement(2300598..2301302) 1 NC_008209.1 GntR family transcriptional regulator 2301302 4196362 RD1_2411 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_682667.1 2300598 R 375451 CDS YP_682668.1 110679661 4196363 complement(2301743..2302561) 1 NC_008209.1 ABC transporter permease 2302561 4196363 RD1_2412 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682668.1 2301743 R 375451 CDS YP_682669.1 110679662 4196325 complement(2302558..2303511) 1 NC_008209.1 putrescine ABC transporter permease 2303511 4196325 RD1_2413 Roseobacter denitrificans OCh 114 putrescine ABC transporter permease YP_682669.1 2302558 R 375451 CDS YP_682670.1 110679663 4196326 complement(2303490..2304518) 1 NC_008209.1 spermidine/putrescine ABC transporter ATP-binding protein 2304518 4196326 RD1_2414 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter ATP-binding protein YP_682670.1 2303490 R 375451 CDS YP_682671.1 110679664 4196327 complement(2304566..2305615) 1 NC_008209.1 extracellular solute-binding protein 2305615 4196327 RD1_2416 Roseobacter denitrificans OCh 114 extracellular solute-binding protein YP_682671.1 2304566 R 375451 CDS YP_682672.1 110679665 4196328 complement(2305776..2306549) 1 NC_008209.1 DeoR family transcriptional regulator 2306549 4196328 RD1_2417 Roseobacter denitrificans OCh 114 DeoR family transcriptional regulator YP_682672.1 2305776 R 375451 CDS YP_682673.1 110679666 4196329 2306638..2307804 1 NC_008209.1 glucosamine--fructose-6-phosphate aminotransferase 2307804 4196329 RD1_2418 Roseobacter denitrificans OCh 114 glucosamine--fructose-6-phosphate aminotransferase YP_682673.1 2306638 D 375451 CDS YP_682674.1 110679667 4196330 2307806..2308828 1 NC_008209.1 ribokinase 2308828 rbsK 4196330 rbsK Roseobacter denitrificans OCh 114 ribokinase YP_682674.1 2307806 D 375451 CDS YP_682675.1 110679668 4196331 2308819..2309607 1 NC_008209.1 photosystem I biogenesis protein 2309607 btpA 4196331 btpA Roseobacter denitrificans OCh 114 photosystem I biogenesis protein YP_682675.1 2308819 D 375451 CDS YP_682676.1 110679669 4196332 2309604..2310551 1 NC_008209.1 polysaccharide deacetylase 2310551 4196332 RD1_2421 Roseobacter denitrificans OCh 114 polysaccharide deacetylase YP_682676.1 2309604 D 375451 CDS YP_682677.1 110679670 4196333 2310548..2311435 1 NC_008209.1 hypothetical protein 2311435 4196333 RD1_2422 Roseobacter denitrificans OCh 114 hypothetical protein YP_682677.1 2310548 D 375451 CDS YP_682678.1 110679671 4196334 2311432..2312079 1 NC_008209.1 hydantoin racemase 2312079 hyuE 4196334 hyuE Roseobacter denitrificans OCh 114 hydantoin racemase YP_682678.1 2311432 D 375451 CDS YP_682679.1 110679672 4196335 2312076..2313587 1 NC_008209.1 amidohydrolase 2313587 4196335 RD1_2424 Roseobacter denitrificans OCh 114 amidohydrolase YP_682679.1 2312076 D 375451 CDS YP_682680.1 110679673 4196336 2313757..2314893 1 NC_008209.1 ABC transporter ATP-binding protein 2314893 4196336 RD1_2427 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682680.1 2313757 D 375451 CDS YP_682681.1 110679674 4196337 2314935..2315966 1 NC_008209.1 ABC transporter substrate-binding protein 2315966 4196337 RD1_2428 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_682681.1 2314935 D 375451 CDS YP_682682.1 110679675 4196338 2315969..2316820 1 NC_008209.1 ABC transporter permease 2316820 4196338 RD1_2429 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682682.1 2315969 D 375451 CDS YP_682683.1 110679676 4196339 2316820..2317641 1 NC_008209.1 ABC transporter permease 2317641 4196339 RD1_2430 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682683.1 2316820 D 375451 CDS YP_682684.1 110679677 4196340 2317649..2318560 1 NC_008209.1 polysaccharide deacetylase 2318560 4196340 RD1_2431 Roseobacter denitrificans OCh 114 polysaccharide deacetylase YP_682684.1 2317649 D 375451 CDS YP_682685.1 110679678 4196341 2318557..2319411 1 NC_008209.1 peptidylglycine alpha-amidating monooxygenase 2319411 pam 4196341 pam Roseobacter denitrificans OCh 114 peptidylglycine alpha-amidating monooxygenase YP_682685.1 2318557 D 375451 CDS YP_682686.1 110679679 4196342 complement(2319517..2319747) 1 NC_008209.1 transcriptional regulator 2319747 4196342 RD1_2433 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682686.1 2319517 R 375451 CDS YP_682687.1 110679680 4196343 complement(2319749..2320186) 1 NC_008209.1 hypothetical protein 2320186 4196343 RD1_2434 Roseobacter denitrificans OCh 114 hypothetical protein YP_682687.1 2319749 R 375451 CDS YP_682688.1 110679681 4196344 2320359..2320928 1 NC_008209.1 hypothetical protein 2320928 4196344 RD1_2436 Roseobacter denitrificans OCh 114 hypothetical protein YP_682688.1 2320359 D 375451 CDS YP_682689.1 110679682 4196306 complement(2320946..2321254) 1 NC_008209.1 hypothetical protein 2321254 4196306 RD1_2437 Roseobacter denitrificans OCh 114 hypothetical protein YP_682689.1 2320946 R 375451 CDS YP_682690.1 110679683 4196307 complement(2321264..2321962) 1 NC_008209.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrB 2321962 ftrB 4196307 ftrB Roseobacter denitrificans OCh 114 transcriptional activator FtrB YP_682690.1 2321264 R 375451 CDS YP_682691.1 110679684 4196308 2322219..2322716 1 NC_008209.1 hypothetical protein 2322716 4196308 RD1_2439 Roseobacter denitrificans OCh 114 hypothetical protein YP_682691.1 2322219 D 375451 CDS YP_682692.1 110679685 4196309 2322735..2324381 1 NC_008209.1 nitrate permease 2324381 napA 4196309 napA Roseobacter denitrificans OCh 114 nitrate permease YP_682692.1 2322735 D 375451 CDS YP_682693.1 110679686 4196310 2324450..2325850 1 NC_008209.1 nitrite extrusion protein 2325850 narK 4196310 narK Roseobacter denitrificans OCh 114 nitrite extrusion protein YP_682693.1 2324450 D 375451 CDS YP_682694.1 110679687 4196311 2325913..2329653 1 NC_008209.1 nitrate reductase subunit alpha 2329653 narG 4196311 narG Roseobacter denitrificans OCh 114 nitrate reductase subunit alpha YP_682694.1 2325913 D 375451 CDS YP_682695.1 110679688 4196312 2329650..2331170 1 NC_008209.1 nitrate reductase subunit beta 2331170 narH 4196312 narH Roseobacter denitrificans OCh 114 nitrate reductase subunit beta YP_682695.1 2329650 D 375451 CDS YP_682696.1 110679689 4196313 2331170..2331880 1 NC_008209.1 nitrate reductase subunit delta 2331880 narJ 4196313 narJ Roseobacter denitrificans OCh 114 nitrate reductase subunit delta YP_682696.1 2331170 D 375451 CDS YP_682697.1 110679690 4196314 2331892..2332686 1 NC_008209.1 nitrate reductase subunit gamma 2332686 narI 4196314 narI Roseobacter denitrificans OCh 114 nitrate reductase subunit gamma YP_682697.1 2331892 D 375451 CDS YP_682698.1 110679691 4196315 2332692..2333522 1 NC_008209.1 peptidyl-prolyl cis-trans isomerase 2333522 4196315 RD1_2446 Roseobacter denitrificans OCh 114 peptidyl-prolyl cis-trans isomerase YP_682698.1 2332692 D 375451 CDS YP_682699.1 110679692 4196316 2334099..2334674 1 NC_008209.1 hypothetical protein 2334674 4196316 RD1_2447 Roseobacter denitrificans OCh 114 hypothetical protein YP_682699.1 2334099 D 375451 CDS YP_682700.1 110679693 4196317 2334703..2335986 1 NC_008209.1 molybdopterin biosynthesis protein moeA 2335986 moeA 4196317 moeA Roseobacter denitrificans OCh 114 molybdopterin biosynthesis protein moeA YP_682700.1 2334703 D 375451 CDS YP_682701.1 110679694 4196318 complement(2336822..2338441) 1 NC_008209.1 acetolactate synthase 2338441 ilvB 4196318 ilvB Roseobacter denitrificans OCh 114 acetolactate synthase YP_682701.1 2336822 R 375451 CDS YP_682702.1 110679695 4196319 complement(2338438..2339787) 1 NC_008209.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 2339787 gdhA 4196319 gdhA Roseobacter denitrificans OCh 114 glutamate dehydrogenase YP_682702.1 2338438 R 375451 CDS YP_682703.1 110679696 4196320 2339937..2340665 1 NC_008209.1 nitrogen fixation regulatory protein fixK 2340665 fixK 4196320 fixK Roseobacter denitrificans OCh 114 nitrogen fixation regulatory protein fixK YP_682703.1 2339937 D 375451 CDS YP_682704.1 110679697 4196321 2340705..2341181 1 NC_008209.1 MgtC family protein 2341181 4196321 RD1_2452 Roseobacter denitrificans OCh 114 MgtC family protein YP_682704.1 2340705 D 375451 CDS YP_682705.1 110679698 4196322 2341132..2342139 1 NC_008209.1 hypothetical protein 2342139 4196322 RD1_2453 Roseobacter denitrificans OCh 114 hypothetical protein YP_682705.1 2341132 D 375451 CDS YP_682706.1 110679699 4196323 2342546..2342662 1 NC_008209.1 entericidin protein 2342662 4196323 RD1_2454 Roseobacter denitrificans OCh 114 entericidin protein YP_682706.1 2342546 D 375451 CDS YP_682707.1 110679700 4196324 complement(2342926..2343528) 1 NC_008209.1 ExoD family exopolysaccharide synthesis protein 2343528 4196324 RD1_2455 Roseobacter denitrificans OCh 114 ExoD family exopolysaccharide synthesis protein YP_682707.1 2342926 R 375451 CDS YP_682708.1 110679701 4196286 complement(2343816..2343938) 1 NC_008209.1 hypothetical protein 2343938 4196286 RD1_2456 Roseobacter denitrificans OCh 114 hypothetical protein YP_682708.1 2343816 R 375451 CDS YP_682709.1 110679702 4196287 complement(2344225..2344329) 1 NC_008209.1 hypothetical protein 2344329 4196287 RD1_2457 Roseobacter denitrificans OCh 114 hypothetical protein YP_682709.1 2344225 R 375451 CDS YP_682710.1 110679703 4196288 complement(2344429..2344611) 1 NC_008209.1 hypothetical protein 2344611 4196288 RD1_2458 Roseobacter denitrificans OCh 114 hypothetical protein YP_682710.1 2344429 R 375451 CDS YP_682711.1 110679704 4196289 2344761..2345774 1 NC_008209.1 PRC-barrel domain-containing protein 2345774 4196289 RD1_2459 Roseobacter denitrificans OCh 114 PRC-barrel domain-containing protein YP_682711.1 2344761 D 375451 CDS YP_682712.1 110679705 4196290 2346260..2346709 1 NC_008209.1 hypothetical protein 2346709 4196290 RD1_2460 Roseobacter denitrificans OCh 114 hypothetical protein YP_682712.1 2346260 D 375451 CDS YP_682713.1 110679706 4196291 complement(2347022..2348140) 1 NC_008209.1 sensory transduction histidine kinase 2348140 4196291 RD1_2461 Roseobacter denitrificans OCh 114 sensory transduction histidine kinase YP_682713.1 2347022 R 375451 CDS YP_682714.1 110679707 4196292 complement(2348777..2349601) 1 NC_008209.1 RNA polymerase sigma factor 2349601 4196292 RD1_2462 Roseobacter denitrificans OCh 114 RNA polymerase sigma factor YP_682714.1 2348777 R 375451 CDS YP_682715.1 110679708 4196293 2349634..2350407 1 NC_008209.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 2350407 tcrX 4196293 tcrX Roseobacter denitrificans OCh 114 two-component response regulator YP_682715.1 2349634 D 375451 CDS YP_682716.1 110679709 4196294 complement(2350554..2351204) 1 NC_008209.1 Trk potassium uptake system protein 2351204 trkA 4196294 trkA Roseobacter denitrificans OCh 114 Trk potassium uptake system protein YP_682716.1 2350554 R 375451 CDS YP_682717.1 110679710 4196295 complement(2351204..2352634) 1 NC_008209.1 Trk potassium uptake system protein, transmembrane component 2352634 trkH 4196295 trkH Roseobacter denitrificans OCh 114 Trk potassium uptake system protein, transmembrane component YP_682717.1 2351204 R 375451 CDS YP_682718.1 110679711 4196296 2352809..2353657 1 NC_008209.1 transporter 2353657 4196296 RD1_2466 Roseobacter denitrificans OCh 114 transporter YP_682718.1 2352809 D 375451 CDS YP_682719.1 110679712 4196297 complement(2353715..2353930) 1 NC_008209.1 hypothetical protein 2353930 4196297 RD1_2467 Roseobacter denitrificans OCh 114 hypothetical protein YP_682719.1 2353715 R 375451 CDS YP_682720.1 110679713 4196298 complement(2354043..2354312) 1 NC_008209.1 hypothetical protein 2354312 4196298 RD1_2468 Roseobacter denitrificans OCh 114 hypothetical protein YP_682720.1 2354043 R 375451 CDS YP_682721.1 110679714 4196299 2354458..2355795 1 NC_008209.1 MatE efflux family protein 2355795 4196299 RD1_2470 Roseobacter denitrificans OCh 114 MatE efflux family protein YP_682721.1 2354458 D 375451 CDS YP_682722.1 110679715 4196300 complement(2355865..2356023) 1 NC_008209.1 hypothetical protein 2356023 4196300 RD1_2471 Roseobacter denitrificans OCh 114 hypothetical protein YP_682722.1 2355865 R 375451 CDS YP_682723.1 110679716 4196301 2356262..2356486 1 NC_008209.1 hypothetical protein 2356486 4196301 RD1_2472 Roseobacter denitrificans OCh 114 hypothetical protein YP_682723.1 2356262 D 375451 CDS YP_682724.1 110679717 4196302 2356494..2356877 1 NC_008209.1 hypothetical protein 2356877 4196302 RD1_2473 Roseobacter denitrificans OCh 114 hypothetical protein YP_682724.1 2356494 D 375451 CDS YP_682725.1 110679718 4196303 complement(2356872..2356964) 1 NC_008209.1 hypothetical protein 2356964 4196303 RD1_2474 Roseobacter denitrificans OCh 114 hypothetical protein YP_682725.1 2356872 R 375451 CDS YP_682726.1 110679719 4196304 complement(2357012..2357266) 1 NC_008209.1 hypothetical protein 2357266 4196304 RD1_2475 Roseobacter denitrificans OCh 114 hypothetical protein YP_682726.1 2357012 R 375451 CDS YP_682727.1 110679720 4196305 2357656..2358780 1 NC_008209.1 hypothetical protein 2358780 4196305 RD1_2476 Roseobacter denitrificans OCh 114 hypothetical protein YP_682727.1 2357656 D 375451 CDS YP_682728.1 110679721 4196267 2358764..2360305 1 NC_008209.1 phospholipase D 2360305 pld 4196267 pld Roseobacter denitrificans OCh 114 phospholipase D YP_682728.1 2358764 D 375451 CDS YP_682729.1 110679722 4196268 2360519..2361037 1 NC_008209.1 hypothetical protein 2361037 4196268 RD1_2478 Roseobacter denitrificans OCh 114 hypothetical protein YP_682729.1 2360519 D 375451 CDS YP_682730.1 110679723 4196269 2361034..2361456 1 NC_008209.1 hypothetical protein 2361456 4196269 RD1_2479 Roseobacter denitrificans OCh 114 hypothetical protein YP_682730.1 2361034 D 375451 CDS YP_682731.1 110679724 4196270 2361449..2362210 1 NC_008209.1 hypothetical protein 2362210 4196270 RD1_2481 Roseobacter denitrificans OCh 114 hypothetical protein YP_682731.1 2361449 D 375451 CDS YP_682732.1 110679725 4196271 2362266..2362562 1 NC_008209.1 hypothetical protein 2362562 4196271 RD1_2482 Roseobacter denitrificans OCh 114 hypothetical protein YP_682732.1 2362266 D 375451 CDS YP_682733.1 110679726 4196273 2366021..2367289 1 NC_008209.1 hypothetical protein 2367289 4196273 RD1_2485 Roseobacter denitrificans OCh 114 hypothetical protein YP_682733.1 2366021 D 375451 CDS YP_682734.1 110679727 4196274 complement(2368323..2369162) 1 NC_008209.1 hypothetical protein 2369162 4196274 RD1_2486 Roseobacter denitrificans OCh 114 hypothetical protein YP_682734.1 2368323 R 375451 CDS YP_682735.1 110679728 4196275 complement(2369250..2372000) 1 NC_008209.1 helicase IV 2372000 helD 4196275 helD Roseobacter denitrificans OCh 114 helicase IV YP_682735.1 2369250 R 375451 CDS YP_682736.1 110679729 4196277 complement(2373866..2375803) 1 NC_008209.1 hypothetical protein 2375803 4196277 RD1_2490 Roseobacter denitrificans OCh 114 hypothetical protein YP_682736.1 2373866 R 375451 CDS YP_682737.1 110679730 4196278 complement(2375796..2377076) 1 NC_008209.1 reverse transcriptase/maturase family protein 2377076 4196278 RD1_2491 Roseobacter denitrificans OCh 114 reverse transcriptase/maturase family protein YP_682737.1 2375796 R 375451 CDS YP_682738.1 110679731 4196279 2377621..2379657 1 NC_008209.1 type I secretion target repeat-containing protein 2379657 4196279 RD1_2492 Roseobacter denitrificans OCh 114 type I secretion target repeat-containing protein YP_682738.1 2377621 D 375451 CDS YP_682739.1 110679732 4196280 complement(2380252..2380716) 1 NC_008209.1 hypothetical protein 2380716 4196280 RD1_2493 Roseobacter denitrificans OCh 114 hypothetical protein YP_682739.1 2380252 R 375451 CDS YP_682740.1 110679733 4196281 2381564..2382388 1 NC_008209.1 hypothetical protein 2382388 4196281 RD1_2494 Roseobacter denitrificans OCh 114 hypothetical protein YP_682740.1 2381564 D 375451 CDS YP_682741.1 110679734 4196282 complement(2381609..2382577) 1 NC_008209.1 hypothetical protein 2382577 4196282 RD1_2495 Roseobacter denitrificans OCh 114 hypothetical protein YP_682741.1 2381609 R 375451 CDS YP_682742.1 110679735 4196283 complement(2382869..2383438) 1 NC_008209.1 transcriptional regulator 2383438 4196283 RD1_2496 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682742.1 2382869 R 375451 CDS YP_682743.1 110679736 4196284 2383569..2383946 1 NC_008209.1 hypothetical protein 2383946 4196284 RD1_2497 Roseobacter denitrificans OCh 114 hypothetical protein YP_682743.1 2383569 D 375451 CDS YP_682744.1 110679737 4196285 2384018..2384965 1 NC_008209.1 pyridoxamine 5'-phosphate oxidase family protein 2384965 4196285 RD1_2498 Roseobacter denitrificans OCh 114 pyridoxamine 5'-phosphate oxidase family protein YP_682744.1 2384018 D 375451 CDS YP_682745.1 110679738 4195248 2385032..2385463 1 NC_008209.1 hypothetical protein 2385463 4195248 RD1_2499 Roseobacter denitrificans OCh 114 hypothetical protein YP_682745.1 2385032 D 375451 CDS YP_682746.1 110679739 4195249 complement(2385560..2386456) 1 NC_008209.1 LysR family transcriptional regulator 2386456 4195249 RD1_2500 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_682746.1 2385560 R 375451 CDS YP_682747.1 110679740 4195250 2386556..2387707 1 NC_008209.1 pyridine nucleotide-disulfide oxidoreductase family protein 2387707 4195250 RD1_2501 Roseobacter denitrificans OCh 114 pyridine nucleotide-disulfide oxidoreductase family protein YP_682747.1 2386556 D 375451 CDS YP_682748.1 110679741 4195251 2387762..2388646 1 NC_008209.1 oxidoreductase 2388646 4195251 RD1_2502 Roseobacter denitrificans OCh 114 oxidoreductase YP_682748.1 2387762 D 375451 CDS YP_682749.1 110679742 4195252 2389279..2390283 1 NC_008209.1 tRNA-dihydrouridine synthase A 2390283 4195252 RD1_2504 Roseobacter denitrificans OCh 114 tRNA-dihydrouridine synthase A YP_682749.1 2389279 D 375451 CDS YP_682750.1 110679743 4195253 complement(2390185..2391216) 1 NC_008209.1 hypothetical protein 2391216 4195253 RD1_2505 Roseobacter denitrificans OCh 114 hypothetical protein YP_682750.1 2390185 R 375451 CDS YP_682751.1 110679744 4195254 2390359..2391159 1 NC_008209.1 hypothetical protein 2391159 4195254 RD1_2506 Roseobacter denitrificans OCh 114 hypothetical protein YP_682751.1 2390359 D 375451 CDS YP_682752.1 110679745 4195255 2391269..2392054 1 NC_008209.1 inositol monophosphatase 2392054 suhB 4195255 suhB Roseobacter denitrificans OCh 114 inositol monophosphatase YP_682752.1 2391269 D 375451 CDS YP_682753.1 110679746 4195256 complement(2392088..2392831) 1 NC_008209.1 hypothetical protein 2392831 4195256 RD1_2508 Roseobacter denitrificans OCh 114 hypothetical protein YP_682753.1 2392088 R 375451 CDS YP_682754.1 110679747 4195257 complement(2392900..2396319) 1 NC_008209.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2396319 putA 4195257 putA Roseobacter denitrificans OCh 114 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_682754.1 2392900 R 375451 CDS YP_682755.1 110679748 4195258 2396453..2396914 1 NC_008209.1 proline dehydrogenase 2396914 putR 4195258 putR Roseobacter denitrificans OCh 114 proline dehydrogenase YP_682755.1 2396453 D 375451 CDS YP_682756.1 110679749 4195259 2396946..2397500 1 NC_008209.1 hypothetical protein 2397500 4195259 RD1_2511 Roseobacter denitrificans OCh 114 hypothetical protein YP_682756.1 2396946 D 375451 CDS YP_682757.1 110679750 4195261 2397982..2400573 1 NC_008209.1 methyl-accepting chemotaxis protein McpA 2400573 mcpA 4195261 mcpA Roseobacter denitrificans OCh 114 methyl-accepting chemotaxis protein McpA YP_682757.1 2397982 D 375451 CDS YP_682758.1 110679751 4195262 complement(2401024..2401152) 1 NC_008209.1 hypothetical protein 2401152 4195262 RD1_2514 Roseobacter denitrificans OCh 114 hypothetical protein YP_682758.1 2401024 R 375451 CDS YP_682759.1 110679752 4195263 2401100..2401192 1 NC_008209.1 hypothetical protein 2401192 4195263 RD1_2515 Roseobacter denitrificans OCh 114 hypothetical protein YP_682759.1 2401100 D 375451 CDS YP_682760.1 110679753 4195264 complement(2402719..2404437) 1 NC_008209.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2404437 metG 4195264 metG Roseobacter denitrificans OCh 114 methionyl-tRNA synthetase YP_682760.1 2402719 R 375451 CDS YP_682761.1 110679754 4195265 complement(2404507..2405739) 1 NC_008209.1 major facilitator transporter 2405739 4195265 RD1_2517 Roseobacter denitrificans OCh 114 major facilitator transporter YP_682761.1 2404507 R 375451 CDS YP_682762.1 110679755 4195266 complement(2405805..2406401) 1 NC_008209.1 hypothetical protein 2406401 4195266 RD1_2518 Roseobacter denitrificans OCh 114 hypothetical protein YP_682762.1 2405805 R 375451 CDS YP_682763.1 110679756 4195267 complement(2406459..2407082) 1 NC_008209.1 hypothetical protein 2407082 4195267 RD1_2519 Roseobacter denitrificans OCh 114 hypothetical protein YP_682763.1 2406459 R 375451 CDS YP_682764.1 110679757 4195268 2407223..2408266 1 NC_008209.1 oxidoreductase 2408266 4195268 RD1_2520 Roseobacter denitrificans OCh 114 oxidoreductase YP_682764.1 2407223 D 375451 CDS YP_682765.1 110679758 4195269 2408365..2409279 1 NC_008209.1 hypothetical protein 2409279 4195269 RD1_2521 Roseobacter denitrificans OCh 114 hypothetical protein YP_682765.1 2408365 D 375451 CDS YP_682766.1 110679759 4195270 2409303..2409767 1 NC_008209.1 hypothetical protein 2409767 4195270 RD1_2522 Roseobacter denitrificans OCh 114 hypothetical protein YP_682766.1 2409303 D 375451 CDS YP_682767.1 110679760 4195271 2409764..2411233 1 NC_008209.1 Converts (S)-3-hydroxyacyl-CoA to 3-oxyacyl-CoA; may also act as a thioesterase; bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase 2411233 4195271 RD1_2523 Roseobacter denitrificans OCh 114 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase YP_682767.1 2409764 D 375451 CDS YP_682768.1 110679761 4195272 2411336..2412253 1 NC_008209.1 hypothetical protein 2412253 4195272 RD1_2524 Roseobacter denitrificans OCh 114 hypothetical protein YP_682768.1 2411336 D 375451 CDS YP_682769.1 110679762 4195273 complement(2412365..2413033) 1 NC_008209.1 hydrolase 2413033 4195273 RD1_2525 Roseobacter denitrificans OCh 114 hydrolase YP_682769.1 2412365 R 375451 CDS YP_682770.1 110679763 4195274 complement(2413111..2413527) 1 NC_008209.1 hypothetical protein 2413527 4195274 RD1_2526 Roseobacter denitrificans OCh 114 hypothetical protein YP_682770.1 2413111 R 375451 CDS YP_682771.1 110679764 4195275 complement(2414021..2415490) 1 NC_008209.1 diguanylate cyclase response regulator 2415490 pleD 4195275 pleD Roseobacter denitrificans OCh 114 diguanylate cyclase response regulator YP_682771.1 2414021 R 375451 CDS YP_682772.1 110679765 4195276 2415526..2415810 1 NC_008209.1 hypothetical protein 2415810 4195276 RD1_2528 Roseobacter denitrificans OCh 114 hypothetical protein YP_682772.1 2415526 D 375451 CDS YP_682773.1 110679766 4195277 2415807..2416499 1 NC_008209.1 haloacid dehalogenase 2416499 4195277 RD1_2529 Roseobacter denitrificans OCh 114 haloacid dehalogenase YP_682773.1 2415807 D 375451 CDS YP_682774.1 110679767 4195278 2416595..2418157 1 NC_008209.1 trimethylamine methyltransferase family protein 2418157 4195278 RD1_2530 Roseobacter denitrificans OCh 114 trimethylamine methyltransferase family protein YP_682774.1 2416595 D 375451 CDS YP_682775.1 110679768 4195279 2418229..2418816 1 NC_008209.1 hypothetical protein 2418816 4195279 RD1_2531 Roseobacter denitrificans OCh 114 hypothetical protein YP_682775.1 2418229 D 375451 CDS YP_682776.1 110679769 4195280 2418813..2419808 1 NC_008209.1 diguanylate cyclase 2419808 4195280 RD1_2532 Roseobacter denitrificans OCh 114 diguanylate cyclase YP_682776.1 2418813 D 375451 CDS YP_682777.1 110679770 4195281 complement(2419917..2423048) 1 NC_008209.1 RND multidrug efflux transporter protein 2423048 acrF 4195281 acrF Roseobacter denitrificans OCh 114 RND multidrug efflux transporter protein YP_682777.1 2419917 R 375451 CDS YP_682778.1 110679771 4195282 complement(2423053..2424219) 1 NC_008209.1 RND efflux transporter MFP subunit 2424219 acrE 4195282 acrE Roseobacter denitrificans OCh 114 RND efflux transporter MFP subunit YP_682778.1 2423053 R 375451 CDS YP_682779.1 110679772 4195284 complement(2424974..2426713) 1 NC_008209.1 single-stranded-DNA-specific exonuclease RecJ 2426713 recJ 4195284 recJ Roseobacter denitrificans OCh 114 single-stranded-DNA-specific exonuclease RecJ YP_682779.1 2424974 R 375451 CDS YP_682780.1 110679773 4198871 complement(2426748..2427722) 1 NC_008209.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 2427722 glpX 4198871 glpX Roseobacter denitrificans OCh 114 fructose 1,6-bisphosphatase II YP_682780.1 2426748 R 375451 CDS YP_682781.1 110679774 4198872 complement(2427807..2429093) 1 NC_008209.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2429093 hom 4198872 hom Roseobacter denitrificans OCh 114 homoserine dehydrogenase YP_682781.1 2427807 R 375451 CDS YP_682782.1 110679775 4198873 complement(2429189..2429575) 1 NC_008209.1 hypothetical protein 2429575 4198873 RD1_2539 Roseobacter denitrificans OCh 114 hypothetical protein YP_682782.1 2429189 R 375451 CDS YP_682783.1 110679776 4198874 2429638..2430582 1 NC_008209.1 2-hydroxy-3-oxopropionate reductase 2430582 garR 4198874 garR Roseobacter denitrificans OCh 114 2-hydroxy-3-oxopropionate reductase YP_682783.1 2429638 D 375451 CDS YP_682784.1 110679777 4198875 complement(2430595..2431887) 1 NC_008209.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2431887 serS 4198875 serS Roseobacter denitrificans OCh 114 seryl-tRNA synthetase YP_682784.1 2430595 R 375451 CDS YP_682785.1 110679778 4198876 complement(2431977..2432786) 1 NC_008209.1 trypsin domain-containing protein 2432786 4198876 RD1_2542 Roseobacter denitrificans OCh 114 trypsin domain-containing protein YP_682785.1 2431977 R 375451 CDS YP_682786.1 110679779 4198877 2432905..2433183 1 NC_008209.1 preprotein translocase subunit YajC 2433183 yajC 4198877 yajC Roseobacter denitrificans OCh 114 preprotein translocase subunit YajC YP_682786.1 2432905 D 375451 CDS YP_682787.1 110679780 4198878 2433217..2434878 1 NC_008209.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2434878 secD 4198878 secD Roseobacter denitrificans OCh 114 preprotein translocase subunit SecD YP_682787.1 2433217 D 375451 CDS YP_682788.1 110679781 4198879 2434880..2435860 1 NC_008209.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2435860 secF 4198879 secF Roseobacter denitrificans OCh 114 preprotein translocase subunit SecF YP_682788.1 2434880 D 375451 CDS YP_682789.1 110679782 4198880 2435874..2436233 1 NC_008209.1 hypothetical protein 2436233 4198880 RD1_2546 Roseobacter denitrificans OCh 114 hypothetical protein YP_682789.1 2435874 D 375451 CDS YP_682790.1 110679783 4198881 2436278..2436898 1 NC_008209.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2436898 ccmA 4198881 ccmA Roseobacter denitrificans OCh 114 cytochrome c biogenesis protein CcmA YP_682790.1 2436278 D 375451 CDS YP_682791.1 110679784 4198882 2436895..2437551 1 NC_008209.1 heme exporter protein ccmB 2437551 ccmB 4198882 ccmB Roseobacter denitrificans OCh 114 heme exporter protein ccmB YP_682791.1 2436895 D 375451 CDS YP_682792.1 110679785 4198883 2437604..2438371 1 NC_008209.1 heme exporter protein 2438371 ccmC 4198883 ccmC Roseobacter denitrificans OCh 114 heme exporter protein YP_682792.1 2437604 D 375451 CDS YP_682793.1 110679786 4198884 2438368..2438526 1 NC_008209.1 hypothetical protein 2438526 4198884 RD1_2550 Roseobacter denitrificans OCh 114 hypothetical protein YP_682793.1 2438368 D 375451 CDS YP_682794.1 110679787 4198885 2438519..2439058 1 NC_008209.1 thiol:disulfide interchange protein cycY 2439058 cycY 4198885 cycY Roseobacter denitrificans OCh 114 thiol:disulfide interchange protein cycY YP_682794.1 2438519 D 375451 CDS YP_682795.1 110679788 4198886 complement(2439322..2439930) 1 NC_008209.1 glucose ABC transporter ATP-binding subunit 2439930 gltK 4198886 gltK Roseobacter denitrificans OCh 114 glucose ABC transporter ATP-binding subunit YP_682795.1 2439322 R 375451 CDS YP_682796.1 110679789 4198887 complement(2440108..2440536) 1 NC_008209.1 ABC transporter permease 2440536 4198887 RD1_2553 Roseobacter denitrificans OCh 114 ABC transporter permease YP_682796.1 2440108 R 375451 CDS YP_682797.1 110679790 4198888 complement(2440696..2441319) 1 NC_008209.1 hypothetical protein 2441319 4198888 RD1_2554 Roseobacter denitrificans OCh 114 hypothetical protein YP_682797.1 2440696 R 375451 CDS YP_682798.1 110679791 4198889 complement(2441611..2444298) 1 NC_008209.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2444298 acnA 4198889 acnA Roseobacter denitrificans OCh 114 aconitate hydratase YP_682798.1 2441611 R 375451 CDS YP_682799.1 110679792 4198890 2444529..2445224 1 NC_008209.1 hypothetical protein 2445224 4198890 RD1_2556 Roseobacter denitrificans OCh 114 hypothetical protein YP_682799.1 2444529 D 375451 CDS YP_682800.1 110679793 4195172 complement(2445230..2446132) 1 NC_008209.1 lipid A biosynthesis lauroyl acyltransferase 2446132 4195172 RD1_2557 Roseobacter denitrificans OCh 114 lipid A biosynthesis lauroyl acyltransferase YP_682800.1 2445230 R 375451 CDS YP_682801.1 110679794 4195173 complement(2446346..2447404) 1 NC_008209.1 flagellar motor switch protein FliG 2447404 fliG 4195173 fliG Roseobacter denitrificans OCh 114 flagellar motor switch protein FliG YP_682801.1 2446346 R 375451 CDS YP_682802.1 110679795 4195174 complement(2447942..2449246) 1 NC_008209.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2449246 purB 4195174 purB Roseobacter denitrificans OCh 114 adenylosuccinate lyase YP_682802.1 2447942 R 375451 CDS YP_682803.1 110679796 4195175 2449417..2449821 1 NC_008209.1 hypothetical protein 2449821 4195175 RD1_2560 Roseobacter denitrificans OCh 114 hypothetical protein YP_682803.1 2449417 D 375451 CDS YP_682804.1 110679797 4195176 2449897..2450502 1 NC_008209.1 BioY family protein 2450502 bioY 4195176 bioY Roseobacter denitrificans OCh 114 BioY family protein YP_682804.1 2449897 D 375451 CDS YP_682805.1 110679798 4195177 2450637..2451206 1 NC_008209.1 hypothetical protein 2451206 4195177 RD1_2562 Roseobacter denitrificans OCh 114 hypothetical protein YP_682805.1 2450637 D 375451 CDS YP_682806.1 110679799 4195178 complement(2451559..2452776) 1 NC_008209.1 hypothetical protein 2452776 4195178 RD1_2563 Roseobacter denitrificans OCh 114 hypothetical protein YP_682806.1 2451559 R 375451 CDS YP_682807.1 110679800 4195179 2453031..2453930 1 NC_008209.1 hypothetical protein 2453930 4195179 RD1_2564 Roseobacter denitrificans OCh 114 hypothetical protein YP_682807.1 2453031 D 375451 CDS YP_682808.1 110679801 4195180 complement(2453985..2454698) 1 NC_008209.1 hypothetical protein 2454698 4195180 RD1_2565 Roseobacter denitrificans OCh 114 hypothetical protein YP_682808.1 2453985 R 375451 CDS YP_682809.1 110679802 4195181 complement(2454926..2456269) 1 NC_008209.1 M24 family metallopeptidase 2456269 4195181 RD1_2566 Roseobacter denitrificans OCh 114 M24 family metallopeptidase YP_682809.1 2454926 R 375451 CDS YP_682810.1 110679803 4195182 2456398..2456868 1 NC_008209.1 hypothetical protein 2456868 4195182 RD1_2567 Roseobacter denitrificans OCh 114 hypothetical protein YP_682810.1 2456398 D 375451 CDS YP_682811.1 110679804 4195183 2456907..2457128 1 NC_008209.1 hypothetical protein 2457128 4195183 RD1_2568 Roseobacter denitrificans OCh 114 hypothetical protein YP_682811.1 2456907 D 375451 CDS YP_682812.1 110679805 4195184 complement(2457282..2458685) 1 NC_008209.1 glutamine synthetase, type I 2458685 glnA 4195184 glnA Roseobacter denitrificans OCh 114 glutamine synthetase, type I YP_682812.1 2457282 R 375451 CDS YP_682813.1 110679806 4195185 complement(2458734..2459072) 1 NC_008209.1 nitrogen regulatory protein P-II 2459072 glnB 4195185 glnB Roseobacter denitrificans OCh 114 nitrogen regulatory protein P-II YP_682813.1 2458734 R 375451 CDS YP_682814.1 110679807 4195187 complement(2460914..2461444) 1 NC_008209.1 hypothetical protein 2461444 4195187 RD1_2573 Roseobacter denitrificans OCh 114 hypothetical protein YP_682814.1 2460914 R 375451 CDS YP_682815.1 110679808 4195189 complement(2461914..2462414) 1 NC_008209.1 single-strand binding protein 2462414 ssb 4195189 ssb Roseobacter denitrificans OCh 114 single-strand binding protein YP_682815.1 2461914 R 375451 CDS YP_682816.1 110679809 4195018 2462636..2463220 1 NC_008209.1 transglycosylase 2463220 4195018 RD1_2576 Roseobacter denitrificans OCh 114 transglycosylase YP_682816.1 2462636 D 375451 CDS YP_682817.1 110679810 4195019 complement(2463289..2465379) 1 NC_008209.1 ABC transporter ATP-binding protein 2465379 4195019 RD1_2578 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_682817.1 2463289 R 375451 CDS YP_682818.1 110679811 4195020 complement(2465464..2466681) 1 NC_008209.1 oligopeptide ABC transporter permease 2466681 4195020 RD1_2580 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter permease YP_682818.1 2465464 R 375451 CDS YP_682819.1 110679812 4195021 complement(2466694..2467737) 1 NC_008209.1 oligopeptide ABC transporter permease 2467737 4195021 RD1_2581 Roseobacter denitrificans OCh 114 oligopeptide ABC transporter permease YP_682819.1 2466694 R 375451 CDS YP_682820.1 110679813 4195022 complement(2467946..2468749) 1 NC_008209.1 AraC family transcriptional regulator 2468749 pobR 4195022 pobR Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_682820.1 2467946 R 375451 CDS YP_682821.1 110679814 4195023 2468784..2468933 1 NC_008209.1 hypothetical protein 2468933 4195023 RD1_2583 Roseobacter denitrificans OCh 114 hypothetical protein YP_682821.1 2468784 D 375451 CDS YP_682822.1 110679815 4195024 complement(2468851..2469690) 1 NC_008209.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2469690 miaA 4195024 miaA Roseobacter denitrificans OCh 114 tRNA delta(2)-isopentenylpyrophosphate transferase YP_682822.1 2468851 R 375451 CDS YP_682823.1 110679816 4195025 2469832..2470560 1 NC_008209.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2470560 pyrH 4195025 pyrH Roseobacter denitrificans OCh 114 uridylate kinase YP_682823.1 2469832 D 375451 CDS YP_682824.1 110679817 4195026 2470644..2471207 1 NC_008209.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2471207 frr 4195026 frr Roseobacter denitrificans OCh 114 ribosome recycling factor YP_682824.1 2470644 D 375451 CDS YP_682825.1 110679818 4195027 2471371..2472147 1 NC_008209.1 UDP diphosphate synthase 2472147 uppS 4195027 uppS Roseobacter denitrificans OCh 114 UDP diphosphate synthase YP_682825.1 2471371 D 375451 CDS YP_682826.1 110679819 4195028 2472154..2472948 1 NC_008209.1 phosphatidate cytidylyltransferase 2472948 4195028 RD1_2588 Roseobacter denitrificans OCh 114 phosphatidate cytidylyltransferase YP_682826.1 2472154 D 375451 CDS YP_682827.1 110679820 4195029 2472956..2474128 1 NC_008209.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2474128 dxr 4195029 dxr Roseobacter denitrificans OCh 114 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_682827.1 2472956 D 375451 CDS YP_682828.1 110679821 4195030 2474140..2475483 1 NC_008209.1 protease ecfE 2475483 ecfE 4195030 ecfE Roseobacter denitrificans OCh 114 protease ecfE YP_682828.1 2474140 D 375451 CDS YP_682829.1 110679822 4195031 2475586..2475717 1 NC_008209.1 hypothetical protein 2475717 4195031 RD1_2592 Roseobacter denitrificans OCh 114 hypothetical protein YP_682829.1 2475586 D 375451 CDS YP_682830.1 110679823 4195032 2475883..2478213 1 NC_008209.1 outer membrane protein 2478213 4195032 RD1_2593 Roseobacter denitrificans OCh 114 outer membrane protein YP_682830.1 2475883 D 375451 CDS YP_682831.1 110679824 4195033 2478217..2478780 1 NC_008209.1 hypothetical protein 2478780 4195033 RD1_2594 Roseobacter denitrificans OCh 114 hypothetical protein YP_682831.1 2478217 D 375451 CDS YP_682832.1 110679825 4195034 2478861..2479319 1 NC_008209.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2479319 fabZ 4195034 fabZ Roseobacter denitrificans OCh 114 (3R)-hydroxymyristoyl-ACP dehydratase YP_682832.1 2478861 D 375451 CDS YP_682833.1 110679826 4195035 2479323..2480108 1 NC_008209.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2480108 lpxA 4195035 lpxA Roseobacter denitrificans OCh 114 UDP-N-acetylglucosamine acyltransferase YP_682833.1 2479323 D 375451 CDS YP_682834.1 110679827 4195036 2480108..2480899 1 NC_008209.1 hypothetical protein 2480899 4195036 RD1_2597 Roseobacter denitrificans OCh 114 hypothetical protein YP_682834.1 2480108 D 375451 CDS YP_682835.1 110679828 4195037 2480896..2482056 1 NC_008209.1 lipid-A-disaccharide synthase 2482056 lpxB 4195037 lpxB Roseobacter denitrificans OCh 114 lipid-A-disaccharide synthase YP_682835.1 2480896 D 375451 CDS YP_682836.1 110679829 4194960 complement(2482120..2483262) 1 NC_008209.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2483262 mnmA 4194960 mnmA Roseobacter denitrificans OCh 114 tRNA-specific 2-thiouridylase MnmA YP_682836.1 2482120 R 375451 CDS YP_682837.1 110679830 4194961 2483356..2483664 1 NC_008209.1 hypothetical protein 2483664 4194961 RD1_2600 Roseobacter denitrificans OCh 114 hypothetical protein YP_682837.1 2483356 D 375451 CDS YP_682838.1 110679831 4194962 2483764..2484483 1 NC_008209.1 transcriptional regulator CtrA 2484483 ctrA 4194962 ctrA Roseobacter denitrificans OCh 114 transcriptional regulator CtrA YP_682838.1 2483764 D 375451 CDS YP_682839.1 110679832 4194963 2484611..2486728 1 NC_008209.1 NAD-dependent DNA ligase 2486728 ligA 4194963 ligA Roseobacter denitrificans OCh 114 NAD-dependent DNA ligase YP_682839.1 2484611 D 375451 CDS YP_682840.1 110679833 4194964 2486725..2488815 1 NC_008209.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2488815 recG 4194964 recG Roseobacter denitrificans OCh 114 ATP-dependent DNA helicase RecG YP_682840.1 2486725 D 375451 CDS YP_682841.1 110679834 4194965 complement(2489200..2490597) 1 NC_008209.1 methyl-accepting chemotaxis protein 2490597 4194965 RD1_2605 Roseobacter denitrificans OCh 114 methyl-accepting chemotaxis protein YP_682841.1 2489200 R 375451 CDS YP_682842.1 110679835 4194966 complement(2490670..2491122) 1 NC_008209.1 hypothetical protein 2491122 4194966 RD1_2606 Roseobacter denitrificans OCh 114 hypothetical protein YP_682842.1 2490670 R 375451 CDS YP_682843.1 110679836 4194967 2491200..2491586 1 NC_008209.1 phosphoribosyl-AMP cyclohydrolase 2491586 hisI 4194967 hisI Roseobacter denitrificans OCh 114 phosphoribosyl-AMP cyclohydrolase YP_682843.1 2491200 D 375451 CDS YP_682844.1 110679837 4194968 complement(2491583..2492446) 1 NC_008209.1 glutamyl-tRNA synthetase 2492446 4194968 RD1_2608 Roseobacter denitrificans OCh 114 glutamyl-tRNA synthetase YP_682844.1 2491583 R 375451 CDS YP_682845.1 110679838 4194969 complement(2492443..2493057) 1 NC_008209.1 hypothetical protein 2493057 4194969 RD1_2609 Roseobacter denitrificans OCh 114 hypothetical protein YP_682845.1 2492443 R 375451 CDS YP_682846.1 110679839 4194970 complement(2493096..2494448) 1 NC_008209.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2494448 gid 4194970 gid Roseobacter denitrificans OCh 114 tRNA (uracil-5-)-methyltransferase Gid YP_682846.1 2493096 R 375451 CDS YP_682847.1 110679840 4194971 2494596..2495015 1 NC_008209.1 thioesterase family protein 2495015 4194971 RD1_2611 Roseobacter denitrificans OCh 114 thioesterase family protein YP_682847.1 2494596 D 375451 CDS YP_682848.1 110679841 4194972 complement(2495186..2495677) 1 NC_008209.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2495677 rpsI 4194972 rpsI Roseobacter denitrificans OCh 114 30S ribosomal protein S9 YP_682848.1 2495186 R 375451 CDS YP_682849.1 110679842 4194973 complement(2495680..2496141) 1 NC_008209.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2496141 rplM 4194973 rplM Roseobacter denitrificans OCh 114 50S ribosomal protein L13 YP_682849.1 2495680 R 375451 CDS YP_682850.1 110679843 4194974 2496716..2498182 1 NC_008209.1 hypothetical protein 2498182 4194974 RD1_2614 Roseobacter denitrificans OCh 114 hypothetical protein YP_682850.1 2496716 D 375451 CDS YP_682851.1 110679844 4194975 2498179..2498724 1 NC_008209.1 hypothetical protein 2498724 4194975 RD1_2615 Roseobacter denitrificans OCh 114 hypothetical protein YP_682851.1 2498179 D 375451 CDS YP_682852.1 110679845 4194976 2498721..2499344 1 NC_008209.1 hypothetical protein 2499344 4194976 RD1_2616 Roseobacter denitrificans OCh 114 hypothetical protein YP_682852.1 2498721 D 375451 CDS YP_682853.1 110679846 4194977 complement(2499362..2499931) 1 NC_008209.1 hypothetical protein 2499931 4194977 RD1_2617 Roseobacter denitrificans OCh 114 hypothetical protein YP_682853.1 2499362 R 375451 CDS YP_682854.1 110679847 4194978 complement(2500070..2500198) 1 NC_008209.1 hypothetical protein 2500198 4194978 RD1_2618 Roseobacter denitrificans OCh 114 hypothetical protein YP_682854.1 2500070 R 375451 CDS YP_682855.1 110679848 4195946 2500244..2501857 1 NC_008209.1 peptidoglycan binding domain-containing protein 2501857 4195946 RD1_2619 Roseobacter denitrificans OCh 114 peptidoglycan binding domain-containing protein YP_682855.1 2500244 D 375451 CDS YP_682856.1 110679849 4195947 2501890..2502990 1 NC_008209.1 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase 2502990 lpxD 4195947 lpxD Roseobacter denitrificans OCh 114 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase YP_682856.1 2501890 D 375451 CDS YP_682857.1 110679850 4195948 2502977..2503282 1 NC_008209.1 acyl carrier protein 2503282 4195948 RD1_2621 Roseobacter denitrificans OCh 114 acyl carrier protein YP_682857.1 2502977 D 375451 CDS YP_682858.1 110679851 4195949 2503289..2504497 1 NC_008209.1 beta-ketoacyl synthase family protein 2504497 4195949 RD1_2623 Roseobacter denitrificans OCh 114 beta-ketoacyl synthase family protein YP_682858.1 2503289 D 375451 CDS YP_682859.1 110679852 4195950 complement(2504518..2505195) 1 NC_008209.1 hypothetical protein 2505195 4195950 RD1_2624 Roseobacter denitrificans OCh 114 hypothetical protein YP_682859.1 2504518 R 375451 CDS YP_682860.1 110679853 4195951 2505535..2507088 1 NC_008209.1 hypothetical protein 2507088 4195951 RD1_2625 Roseobacter denitrificans OCh 114 hypothetical protein YP_682860.1 2505535 D 375451 CDS YP_682861.1 110679854 4195952 complement(2507099..2508415) 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2508415 4195952 RD1_2626 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_682861.1 2507099 R 375451 CDS YP_682862.1 110679855 4195953 complement(2508412..2509422) 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2509422 4195953 RD1_2627 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_682862.1 2508412 R 375451 CDS YP_682863.1 110679856 4195954 complement(2509901..2510725) 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 2510725 4195954 RD1_2628 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_682863.1 2509901 R 375451 CDS YP_682864.1 110679857 4195955 complement(2510722..2511519) 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 2511519 4195955 RD1_2630 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_682864.1 2510722 R 375451 CDS YP_682865.1 110679858 4195956 complement(2511596..2512786) 1 NC_008209.1 branched-chain amino acid ABC transporter substrate-binding protein 2512786 4195956 RD1_2631 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter substrate-binding protein YP_682865.1 2511596 R 375451 CDS YP_682866.1 110679859 4195957 2512799..2512915 1 NC_008209.1 hypothetical protein 2512915 4195957 RD1_2632 Roseobacter denitrificans OCh 114 hypothetical protein YP_682866.1 2512799 D 375451 CDS YP_682867.1 110679860 4195958 2512944..2514032 1 NC_008209.1 glucose dehydrogenase 2514032 4195958 RD1_2633 Roseobacter denitrificans OCh 114 glucose dehydrogenase YP_682867.1 2512944 D 375451 CDS YP_682868.1 110679861 4195959 complement(2514106..2515050) 1 NC_008209.1 AraC family transcriptional regulator 2515050 4195959 RD1_2634 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_682868.1 2514106 R 375451 CDS YP_682869.1 110679862 4195960 2515310..2516680 1 NC_008209.1 phospho-2-dehydro-3-deoxyheptonate aldolase 2516680 4195960 RD1_2635 Roseobacter denitrificans OCh 114 phospho-2-dehydro-3-deoxyheptonate aldolase YP_682869.1 2515310 D 375451 CDS YP_682870.1 110679863 4195961 complement(2516779..2517492) 1 NC_008209.1 hypothetical protein 2517492 4195961 RD1_2636 Roseobacter denitrificans OCh 114 hypothetical protein YP_682870.1 2516779 R 375451 CDS YP_682871.1 110679864 4195962 2517760..2518650 1 NC_008209.1 hypothetical protein 2518650 4195962 RD1_2637 Roseobacter denitrificans OCh 114 hypothetical protein YP_682871.1 2517760 D 375451 CDS YP_682872.1 110679865 4195963 2518663..2519298 1 NC_008209.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2519298 gmk 4195963 gmk Roseobacter denitrificans OCh 114 guanylate kinase YP_682872.1 2518663 D 375451 CDS YP_682873.1 110679866 4195964 2519295..2519822 1 NC_008209.1 transferase 2519822 4195964 RD1_2639 Roseobacter denitrificans OCh 114 transferase YP_682873.1 2519295 D 375451 CDS YP_682874.1 110679867 4195965 2519824..2521011 1 NC_008209.1 methionine gamma-lyase 2521011 mdeA 4195965 mdeA Roseobacter denitrificans OCh 114 methionine gamma-lyase YP_682874.1 2519824 D 375451 CDS YP_682875.1 110679868 4196190 2521030..2522073 1 NC_008209.1 phosphate regulon sensor protein 2522073 phoR 4196190 phoR Roseobacter denitrificans OCh 114 phosphate regulon sensor protein YP_682875.1 2521030 D 375451 CDS YP_682876.1 110679869 4196191 2522268..2523308 1 NC_008209.1 phosphate ABC transporter substrate-binding protein 2523308 pstS 4196191 pstS Roseobacter denitrificans OCh 114 phosphate ABC transporter substrate-binding protein YP_682876.1 2522268 D 375451 CDS YP_682877.1 110679870 4196192 2523371..2524882 1 NC_008209.1 phosphate ABC transporter permease 2524882 pstC 4196192 pstC Roseobacter denitrificans OCh 114 phosphate ABC transporter permease YP_682877.1 2523371 D 375451 CDS YP_682878.1 110679871 4196193 2524879..2526243 1 NC_008209.1 phosphate ABC transporter permease 2526243 pstA 4196193 pstA Roseobacter denitrificans OCh 114 phosphate ABC transporter permease YP_682878.1 2524879 D 375451 CDS YP_682879.1 110679872 4196194 2526256..2527053 1 NC_008209.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2527053 pstB 4196194 pstB Roseobacter denitrificans OCh 114 phosphate transporter ATP-binding protein YP_682879.1 2526256 D 375451 CDS YP_682880.1 110679873 4196195 2527058..2527768 1 NC_008209.1 phosphate transport system regulatory protein PhoU 2527768 phoU 4196195 phoU Roseobacter denitrificans OCh 114 phosphate transport system regulatory protein PhoU YP_682880.1 2527058 D 375451 CDS YP_682881.1 110679874 4196196 2527774..2528463 1 NC_008209.1 phosphate regulon transcriptional regulatory protein PhoB 2528463 phoB 4196196 phoB Roseobacter denitrificans OCh 114 phosphate regulon transcriptional regulatory protein PhoB YP_682881.1 2527774 D 375451 CDS YP_682882.1 110679875 4196197 complement(2528469..2529305) 1 NC_008209.1 hypothetical protein 2529305 4196197 RD1_2649 Roseobacter denitrificans OCh 114 hypothetical protein YP_682882.1 2528469 R 375451 CDS YP_682883.1 110679876 4196198 2529548..2530540 1 NC_008209.1 transposase 2530540 4196198 RD1_2650 Roseobacter denitrificans OCh 114 transposase YP_682883.1 2529548 D 375451 CDS YP_682884.1 110679877 4196199 2530718..2531155 1 NC_008209.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2531155 aroQ 4196199 aroQ Roseobacter denitrificans OCh 114 3-dehydroquinate dehydratase YP_682884.1 2530718 D 375451 CDS YP_682885.1 110679878 4196200 complement(2531236..2532111) 1 NC_008209.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2532111 tsf 4196200 tsf Roseobacter denitrificans OCh 114 elongation factor Ts YP_682885.1 2531236 R 375451 CDS YP_682886.1 110679879 4196201 complement(2532193..2532975) 1 NC_008209.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2532975 rpsB 4196201 rpsB Roseobacter denitrificans OCh 114 30S ribosomal protein S2 YP_682886.1 2532193 R 375451 CDS YP_682887.1 110679880 4196202 2533255..2533842 1 NC_008209.1 hypothetical protein 2533842 4196202 RD1_2654 Roseobacter denitrificans OCh 114 hypothetical protein YP_682887.1 2533255 D 375451 CDS YP_682888.1 110679881 4196203 complement(2533850..2534671) 1 NC_008209.1 acyltransferase 2534671 4196203 RD1_2655 Roseobacter denitrificans OCh 114 acyltransferase YP_682888.1 2533850 R 375451 CDS YP_682889.1 110679882 4196204 complement(2534668..2535432) 1 NC_008209.1 hypothetical protein 2535432 4196204 RD1_2656 Roseobacter denitrificans OCh 114 hypothetical protein YP_682889.1 2534668 R 375451 CDS YP_682890.1 110679883 4196205 2535768..2536364 1 NC_008209.1 hypothetical protein 2536364 4196205 RD1_2657 Roseobacter denitrificans OCh 114 hypothetical protein YP_682890.1 2535768 D 375451 CDS YP_682891.1 110679884 4196206 complement(2536464..2537729) 1 NC_008209.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2537729 proA 4196206 proA Roseobacter denitrificans OCh 114 gamma-glutamyl phosphate reductase YP_682891.1 2536464 R 375451 CDS YP_682892.1 110679885 4196207 complement(2537759..2538883) 1 NC_008209.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2538883 proB 4196207 proB Roseobacter denitrificans OCh 114 gamma-glutamyl kinase YP_682892.1 2537759 R 375451 CDS YP_682893.1 110679886 4196208 complement(2538871..2539905) 1 NC_008209.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2539905 obgE 4196208 obgE Roseobacter denitrificans OCh 114 GTPase ObgE YP_682893.1 2538871 R 375451 CDS YP_682894.1 110679887 4195095 complement(2539941..2540477) 1 NC_008209.1 acetyltransferase 2540477 4195095 RD1_2661 Roseobacter denitrificans OCh 114 acetyltransferase YP_682894.1 2539941 R 375451 CDS YP_682895.1 110679888 4195096 complement(2540480..2541082) 1 NC_008209.1 amino acid transporter LysE 2541082 4195096 RD1_2662 Roseobacter denitrificans OCh 114 amino acid transporter LysE YP_682895.1 2540480 R 375451 CDS YP_682896.1 110679889 4195097 complement(2541704..2541973) 1 NC_008209.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2541973 rpmA 4195097 rpmA Roseobacter denitrificans OCh 114 50S ribosomal protein L27 YP_682896.1 2541704 R 375451 CDS YP_682897.1 110679890 4195098 complement(2541985..2542809) 1 NC_008209.1 fusion of ribosomal protein L21 and COG3743; 50S ribosomal protein L21 2542809 4195098 RD1_2665 Roseobacter denitrificans OCh 114 50S ribosomal protein L21 YP_682897.1 2541985 R 375451 CDS YP_682898.1 110679891 4195099 complement(2542821..2543630) 1 NC_008209.1 hypothetical protein 2543630 4195099 RD1_2666 Roseobacter denitrificans OCh 114 hypothetical protein YP_682898.1 2542821 R 375451 CDS YP_682899.1 110679892 4195100 complement(2543634..2544473) 1 NC_008209.1 hypothetical protein 2544473 4195100 RD1_2668 Roseobacter denitrificans OCh 114 hypothetical protein YP_682899.1 2543634 R 375451 CDS YP_682900.1 110679893 4195102 complement(2544856..2545377) 1 NC_008209.1 hypothetical protein 2545377 4195102 RD1_2670 Roseobacter denitrificans OCh 114 hypothetical protein YP_682900.1 2544856 R 375451 CDS YP_682901.1 110679894 4195103 complement(2545670..2546662) 1 NC_008209.1 hypothetical protein 2546662 4195103 RD1_2671 Roseobacter denitrificans OCh 114 hypothetical protein YP_682901.1 2545670 R 375451 CDS YP_682902.1 110679895 4195104 2546948..2547418 1 NC_008209.1 hypothetical protein 2547418 4195104 RD1_2672 Roseobacter denitrificans OCh 114 hypothetical protein YP_682902.1 2546948 D 375451 CDS YP_682903.1 110679896 4195105 2547677..2548837 1 NC_008209.1 iron ABC transporter substrate-binding protein 2548837 4195105 RD1_2673 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_682903.1 2547677 D 375451 CDS YP_682904.1 110679897 4195106 2548884..2549954 1 NC_008209.1 iron ABC transporter 2549954 4195106 RD1_2674 Roseobacter denitrificans OCh 114 iron ABC transporter YP_682904.1 2548884 D 375451 CDS YP_682905.1 110679898 4195107 2549954..2550724 1 NC_008209.1 Fe-ABC transporter ATP-binding subunit 2550724 4195107 RD1_2675 Roseobacter denitrificans OCh 114 Fe-ABC transporter ATP-binding subunit YP_682905.1 2549954 D 375451 CDS YP_682906.1 110679899 4195108 2550708..2551190 1 NC_008209.1 pseudoazurin 2551190 bcp 4195108 bcp Roseobacter denitrificans OCh 114 pseudoazurin YP_682906.1 2550708 D 375451 CDS YP_682907.1 110679900 4195109 complement(2551317..2551436) 1 NC_008209.1 hypothetical protein 2551436 4195109 RD1_2677 Roseobacter denitrificans OCh 114 hypothetical protein YP_682907.1 2551317 R 375451 CDS YP_682908.1 110679901 4195110 2551435..2553387 1 NC_008209.1 peptidase 2553387 4195110 RD1_2678 Roseobacter denitrificans OCh 114 peptidase YP_682908.1 2551435 D 375451 CDS YP_682909.1 110679902 4195111 complement(2553407..2554444) 1 NC_008209.1 hypothetical protein 2554444 4195111 RD1_2679 Roseobacter denitrificans OCh 114 hypothetical protein YP_682909.1 2553407 R 375451 CDS YP_682910.1 110679903 4195112 complement(2554448..2555974) 1 NC_008209.1 hypothetical protein 2555974 4195112 RD1_2681 Roseobacter denitrificans OCh 114 hypothetical protein YP_682910.1 2554448 R 375451 CDS YP_682911.1 110679904 4195113 complement(2556022..2556807) 1 NC_008209.1 hypothetical protein 2556807 4195113 RD1_2682 Roseobacter denitrificans OCh 114 hypothetical protein YP_682911.1 2556022 R 375451 CDS YP_682912.1 110679905 4195190 2557063..2557671 1 NC_008209.1 hypothetical protein 2557671 4195190 RD1_2683 Roseobacter denitrificans OCh 114 hypothetical protein YP_682912.1 2557063 D 375451 CDS YP_682913.1 110679906 4195191 2558058..2558963 1 NC_008209.1 glutaminase A 2558963 glsA 4195191 glsA Roseobacter denitrificans OCh 114 glutaminase A YP_682913.1 2558058 D 375451 CDS YP_682914.1 110679907 4195192 2559207..2561657 1 NC_008209.1 tyrosine decarboxylase 2561657 4195192 RD1_2685 Roseobacter denitrificans OCh 114 tyrosine decarboxylase YP_682914.1 2559207 D 375451 CDS YP_682915.1 110679908 4195193 2561670..2562596 1 NC_008209.1 hypothetical protein 2562596 4195193 RD1_2686 Roseobacter denitrificans OCh 114 hypothetical protein YP_682915.1 2561670 D 375451 CDS YP_682916.1 110679909 4195194 2562583..2563410 1 NC_008209.1 adenylate cyclase 2563410 cyaA 4195194 cyaA Roseobacter denitrificans OCh 114 adenylate cyclase YP_682916.1 2562583 D 375451 CDS YP_682917.1 110679910 4195196 complement(2563688..2564908) 1 NC_008209.1 cysteine desulfurase 2564908 sufS 4195196 sufS Roseobacter denitrificans OCh 114 cysteine desulfurase YP_682917.1 2563688 R 375451 CDS YP_682918.1 110679911 4195197 complement(2564901..2565482) 1 NC_008209.1 hypothetical protein 2565482 4195197 RD1_2690 Roseobacter denitrificans OCh 114 hypothetical protein YP_682918.1 2564901 R 375451 CDS YP_682919.1 110679912 4195198 complement(2565494..2565979) 1 NC_008209.1 hypothetical protein 2565979 4195198 RD1_2691 Roseobacter denitrificans OCh 114 hypothetical protein YP_682919.1 2565494 R 375451 CDS YP_682920.1 110679913 4195199 complement(2565979..2567259) 1 NC_008209.1 FeS assembly protein SufD 2567259 sufD 4195199 sufD Roseobacter denitrificans OCh 114 FeS assembly protein SufD YP_682920.1 2565979 R 375451 CDS YP_682921.1 110679914 4195200 complement(2567259..2568014) 1 NC_008209.1 FeS assembly ATPase SufC 2568014 sufC 4195200 sufC Roseobacter denitrificans OCh 114 FeS assembly ATPase SufC YP_682921.1 2567259 R 375451 CDS YP_682922.1 110679915 4195201 complement(2568086..2568400) 1 NC_008209.1 hypothetical protein 2568400 4195201 RD1_2695 Roseobacter denitrificans OCh 114 hypothetical protein YP_682922.1 2568086 R 375451 CDS YP_682923.1 110679916 4195202 complement(2568490..2570028) 1 NC_008209.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2570028 sufB 4195202 sufB Roseobacter denitrificans OCh 114 cysteine desulfurase activator complex subunit SufB YP_682923.1 2568490 R 375451 CDS YP_682924.1 110679917 4195203 complement(2570044..2571087) 1 NC_008209.1 cysteine desulfurase 2571087 nifS 4195203 nifS Roseobacter denitrificans OCh 114 cysteine desulfurase YP_682924.1 2570044 R 375451 CDS YP_682925.1 110679918 4195204 complement(2571118..2571591) 1 NC_008209.1 transcriptional regulator 2571591 4195204 RD1_2700 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682925.1 2571118 R 375451 CDS YP_682926.1 110679919 4195205 2571770..2572423 1 NC_008209.1 hypothetical protein 2572423 4195205 RD1_2701 Roseobacter denitrificans OCh 114 hypothetical protein YP_682926.1 2571770 D 375451 CDS YP_682927.1 110679920 4195206 2572427..2572669 1 NC_008209.1 hypothetical protein 2572669 4195206 RD1_2702 Roseobacter denitrificans OCh 114 hypothetical protein YP_682927.1 2572427 D 375451 CDS YP_682928.1 110679921 4195207 2572662..2573249 1 NC_008209.1 hypothetical protein 2573249 4195207 RD1_2703 Roseobacter denitrificans OCh 114 hypothetical protein YP_682928.1 2572662 D 375451 CDS YP_682929.1 110679922 4196171 2573354..2574568 1 NC_008209.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2574568 icd 4196171 icd Roseobacter denitrificans OCh 114 isocitrate dehydrogenase YP_682929.1 2573354 D 375451 CDS YP_682930.1 110679923 4196172 complement(2574546..2574710) 1 NC_008209.1 hypothetical protein 2574710 4196172 RD1_2705 Roseobacter denitrificans OCh 114 hypothetical protein YP_682930.1 2574546 R 375451 CDS YP_682931.1 110679924 4196173 2574906..2575241 1 NC_008209.1 quaternary ammonium compound-resistance protein 2575241 qacE 4196173 qacE Roseobacter denitrificans OCh 114 quaternary ammonium compound-resistance protein YP_682931.1 2574906 D 375451 CDS YP_682932.1 110679925 4196174 2575353..2577170 1 NC_008209.1 GTP-binding protein TypA 2577170 typA 4196174 typA Roseobacter denitrificans OCh 114 GTP-binding protein TypA YP_682932.1 2575353 D 375451 CDS YP_682933.1 110679926 4196175 complement(2577213..2577500) 1 NC_008209.1 hypothetical protein 2577500 4196175 RD1_2708 Roseobacter denitrificans OCh 114 hypothetical protein YP_682933.1 2577213 R 375451 CDS YP_682934.1 110679927 4196176 complement(2577505..2580162) 1 NC_008209.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2580162 alaS 4196176 alaS Roseobacter denitrificans OCh 114 alanyl-tRNA synthetase YP_682934.1 2577505 R 375451 CDS YP_682935.1 110679928 4196177 complement(2580309..2581388) 1 NC_008209.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2581388 recA 4196177 recA Roseobacter denitrificans OCh 114 recombinase A YP_682935.1 2580309 R 375451 CDS YP_682936.1 110679929 4196178 complement(2581628..2583958) 1 NC_008209.1 sensor kinase-like protein 2583958 4196178 RD1_2711 Roseobacter denitrificans OCh 114 sensor kinase-like protein YP_682936.1 2581628 R 375451 CDS YP_682937.1 110679930 4196179 complement(2584031..2585191) 1 NC_008209.1 NOL1/NOP2/sun family protein 2585191 4196179 RD1_2712 Roseobacter denitrificans OCh 114 NOL1/NOP2/sun family protein YP_682937.1 2584031 R 375451 CDS YP_682938.1 110679931 4196180 complement(2585222..2586670) 1 NC_008209.1 inosine-5'-monophosphate dehydrogenase 2586670 guaB 4196180 guaB Roseobacter denitrificans OCh 114 inosine-5'-monophosphate dehydrogenase YP_682938.1 2585222 R 375451 CDS YP_682939.1 110679932 4196181 2586831..2587817 1 NC_008209.1 agmatinase 2587817 4196181 RD1_2715 Roseobacter denitrificans OCh 114 agmatinase YP_682939.1 2586831 D 375451 CDS YP_682940.1 110679933 4196182 2587966..2590014 1 NC_008209.1 hypothetical protein 2590014 4196182 RD1_2716 Roseobacter denitrificans OCh 114 hypothetical protein YP_682940.1 2587966 D 375451 CDS YP_682941.1 110679934 4196184 2590338..2590820 1 NC_008209.1 hypothetical protein 2590820 4196184 RD1_2718 Roseobacter denitrificans OCh 114 hypothetical protein YP_682941.1 2590338 D 375451 CDS YP_682942.1 110679935 4196185 complement(2590817..2592409) 1 NC_008209.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2592409 pgi 4196185 pgi Roseobacter denitrificans OCh 114 glucose-6-phosphate isomerase YP_682942.1 2590817 R 375451 CDS YP_682943.1 110679936 4196186 complement(2592406..2593077) 1 NC_008209.1 6-phosphogluconolactonase 2593077 pgl 4196186 pgl Roseobacter denitrificans OCh 114 6-phosphogluconolactonase YP_682943.1 2592406 R 375451 CDS YP_682944.1 110679937 4196187 complement(2593081..2594544) 1 NC_008209.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2594544 zwf 4196187 zwf Roseobacter denitrificans OCh 114 glucose-6-phosphate 1-dehydrogenase YP_682944.1 2593081 R 375451 CDS YP_682945.1 110679938 4196188 2594716..2595663 1 NC_008209.1 radical SAM domain-containing protein 2595663 4196188 RD1_2724 Roseobacter denitrificans OCh 114 radical SAM domain-containing protein YP_682945.1 2594716 D 375451 CDS YP_682946.1 110679939 4196189 complement(2595677..2595982) 1 NC_008209.1 Usg-like family protein 2595982 4196189 RD1_2725 Roseobacter denitrificans OCh 114 Usg-like family protein YP_682946.1 2595677 R 375451 CDS YP_682947.1 110679940 4196081 2596178..2598895 1 NC_008209.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2598895 gyrA 4196081 gyrA Roseobacter denitrificans OCh 114 DNA gyrase subunit A YP_682947.1 2596178 D 375451 CDS YP_682948.1 110679941 4196082 complement(2599124..2600602) 1 NC_008209.1 thermostable carboxypeptidase 2600602 cxp 4196082 cxp Roseobacter denitrificans OCh 114 thermostable carboxypeptidase YP_682948.1 2599124 R 375451 CDS YP_682949.1 110679942 4196083 complement(2600605..2601753) 1 NC_008209.1 cytochrome c oxidase assembly protein 2601753 4196083 RD1_2728 Roseobacter denitrificans OCh 114 cytochrome c oxidase assembly protein YP_682949.1 2600605 R 375451 CDS YP_682950.1 110679943 4196084 complement(2601816..2602571) 1 NC_008209.1 RNA methyltransferase 2602571 rrm2 4196084 rrm2 Roseobacter denitrificans OCh 114 RNA methyltransferase YP_682950.1 2601816 R 375451 CDS YP_682951.1 110679944 4196085 2602717..2603337 1 NC_008209.1 thiamine-phosphate pyrophosphorylase 2603337 thiE 4196085 thiE Roseobacter denitrificans OCh 114 thiamine-phosphate pyrophosphorylase YP_682951.1 2602717 D 375451 CDS YP_682952.1 110679945 4196086 complement(2603340..2604533) 1 NC_008209.1 hypothetical protein 2604533 4196086 RD1_2731 Roseobacter denitrificans OCh 114 hypothetical protein YP_682952.1 2603340 R 375451 CDS YP_682953.1 110679946 4196087 2604532..2605344 1 NC_008209.1 hypothetical protein 2605344 4196087 RD1_2732 Roseobacter denitrificans OCh 114 hypothetical protein YP_682953.1 2604532 D 375451 CDS YP_682954.1 110679947 4196088 2605396..2606289 1 NC_008209.1 pfkB family kinase 2606289 4196088 RD1_2733 Roseobacter denitrificans OCh 114 pfkB family kinase YP_682954.1 2605396 D 375451 CDS YP_682955.1 110679948 4196089 2606286..2607218 1 NC_008209.1 hypothetical protein 2607218 4196089 RD1_2734 Roseobacter denitrificans OCh 114 hypothetical protein YP_682955.1 2606286 D 375451 CDS YP_682956.1 110679949 4196090 2607300..2608016 1 NC_008209.1 hypothetical protein 2608016 4196090 RD1_2735 Roseobacter denitrificans OCh 114 hypothetical protein YP_682956.1 2607300 D 375451 CDS YP_682957.1 110679950 4196091 complement(2608017..2609054) 1 NC_008209.1 patatin family phospholipase 2609054 4196091 RD1_2736 Roseobacter denitrificans OCh 114 patatin family phospholipase YP_682957.1 2608017 R 375451 CDS YP_682958.1 110679951 4196092 complement(2609130..2609915) 1 NC_008209.1 D-beta-hydroxybutyrate dehydrogenase 2609915 bdhA 4196092 bdhA Roseobacter denitrificans OCh 114 D-beta-hydroxybutyrate dehydrogenase YP_682958.1 2609130 R 375451 CDS YP_682959.1 110679952 4196093 complement(2609934..2610074) 1 NC_008209.1 hypothetical protein 2610074 4196093 RD1_2740 Roseobacter denitrificans OCh 114 hypothetical protein YP_682959.1 2609934 R 375451 CDS YP_682960.1 110679953 4196094 2610248..2612065 1 NC_008209.1 ABC transporter substrate-binding protein 2612065 4196094 RD1_2741 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_682960.1 2610248 D 375451 CDS YP_682961.1 110679954 4196095 complement(2612066..2612689) 1 NC_008209.1 transcriptional regulator 2612689 4196095 RD1_2742 Roseobacter denitrificans OCh 114 transcriptional regulator YP_682961.1 2612066 R 375451 CDS YP_682962.1 110679955 4196096 2612755..2614287 1 NC_008209.1 hypothetical protein 2614287 4196096 RD1_2743 Roseobacter denitrificans OCh 114 hypothetical protein YP_682962.1 2612755 D 375451 CDS YP_682963.1 110679956 4196097 2614265..2614906 1 NC_008209.1 DSBA-like thioredoxin domain-containing protein 2614906 4196097 RD1_2744 Roseobacter denitrificans OCh 114 DSBA-like thioredoxin domain-containing protein YP_682963.1 2614265 D 375451 CDS YP_682964.1 110679957 4196098 2615032..2616252 1 NC_008209.1 MFS permease 2616252 4196098 RD1_2745 Roseobacter denitrificans OCh 114 MFS permease YP_682964.1 2615032 D 375451 CDS YP_682965.1 110679958 4196099 complement(2616249..2619713) 1 NC_008209.1 transcription-repair coupling factor 2619713 mfd 4196099 mfd Roseobacter denitrificans OCh 114 transcription-repair coupling factor YP_682965.1 2616249 R 375451 CDS YP_682966.1 110679959 4195907 complement(2619747..2620274) 1 NC_008209.1 hypothetical protein 2620274 4195907 RD1_2747 Roseobacter denitrificans OCh 114 hypothetical protein YP_682966.1 2619747 R 375451 CDS YP_682967.1 110679960 4195908 2620395..2621393 1 NC_008209.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2621393 hemB 4195908 hemB Roseobacter denitrificans OCh 114 delta-aminolevulinic acid dehydratase YP_682967.1 2620395 D 375451 CDS YP_682968.1 110679961 4195909 2621504..2622070 1 NC_008209.1 hypothetical protein 2622070 4195909 RD1_2750 Roseobacter denitrificans OCh 114 hypothetical protein YP_682968.1 2621504 D 375451 CDS YP_682969.1 110679962 4195910 complement(2622120..2622992) 1 NC_008209.1 3-hydroxyisobutyrate dehydrogenase 2622992 4195910 RD1_2751 Roseobacter denitrificans OCh 114 3-hydroxyisobutyrate dehydrogenase YP_682969.1 2622120 R 375451 CDS YP_682970.1 110679963 4195911 2623092..2625557 1 NC_008209.1 penicillin acylase 2625557 acy 4195911 acy Roseobacter denitrificans OCh 114 penicillin acylase YP_682970.1 2623092 D 375451 CDS YP_682971.1 110679964 4195912 2625558..2626121 1 NC_008209.1 RNA pseudouridylate synthase 2626121 4195912 RD1_2753 Roseobacter denitrificans OCh 114 RNA pseudouridylate synthase YP_682971.1 2625558 D 375451 CDS YP_682972.1 110679965 4195913 complement(2626122..2627420) 1 NC_008209.1 GTP-binding protein HflX 2627420 hflX 4195913 hflX Roseobacter denitrificans OCh 114 GTP-binding protein HflX YP_682972.1 2626122 R 375451 CDS YP_682973.1 110679966 4195914 complement(2627417..2627656) 1 NC_008209.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2627656 hfq 4195914 hfq Roseobacter denitrificans OCh 114 RNA-binding protein Hfq YP_682973.1 2627417 R 375451 CDS YP_682974.1 110679967 4195915 complement(2627785..2629338) 1 NC_008209.1 Trk system potassium uptake protein 2629338 trkH-2 4195915 trkH-2 Roseobacter denitrificans OCh 114 Trk system potassium uptake protein YP_682974.1 2627785 R 375451 CDS YP_682975.1 110679968 4195916 complement(2629343..2630719) 1 NC_008209.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 2630719 trkA 4195916 trkA Roseobacter denitrificans OCh 114 potassium transporter peripheral membrane protein YP_682975.1 2629343 R 375451 CDS YP_682976.1 110679969 4195917 2630758..2631294 1 NC_008209.1 hypothetical protein 2631294 4195917 RD1_2758 Roseobacter denitrificans OCh 114 hypothetical protein YP_682976.1 2630758 D 375451 CDS YP_682977.1 110679970 4195918 2631348..2632385 1 NC_008209.1 hypothetical protein 2632385 4195918 RD1_2759 Roseobacter denitrificans OCh 114 hypothetical protein YP_682977.1 2631348 D 375451 CDS YP_682978.1 110679971 4195919 complement(2632469..2633881) 1 NC_008209.1 nitrogen assimilation regulatory protein 2633881 ntrX 4195919 ntrX Roseobacter denitrificans OCh 114 nitrogen assimilation regulatory protein YP_682978.1 2632469 R 375451 CDS YP_682979.1 110679972 4195920 complement(2633874..2636132) 1 NC_008209.1 nitrogen regulation protein ntrY 2636132 ntrY 4195920 ntrY Roseobacter denitrificans OCh 114 nitrogen regulation protein ntrY YP_682979.1 2633874 R 375451 CDS YP_682980.1 110679973 4195921 complement(2636234..2637598) 1 NC_008209.1 nitrogen regulation protein 2637598 ntrC 4195921 ntrC Roseobacter denitrificans OCh 114 nitrogen regulation protein YP_682980.1 2636234 R 375451 CDS YP_682981.1 110679974 4195922 complement(2637611..2638690) 1 NC_008209.1 nitrogen regulation protein NtrB 2638690 ntrB 4195922 ntrB Roseobacter denitrificans OCh 114 nitrogen regulation protein NtrB YP_682981.1 2637611 R 375451 CDS YP_682982.1 110679975 4195923 complement(2638687..2639670) 1 NC_008209.1 tRNA-dihydrouridine synthase 2639670 4195923 RD1_2765 Roseobacter denitrificans OCh 114 tRNA-dihydrouridine synthase YP_682982.1 2638687 R 375451 CDS YP_682983.1 110679976 4195924 2639848..2640513 1 NC_008209.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2640513 ispD 4195924 ispD Roseobacter denitrificans OCh 114 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_682983.1 2639848 D 375451 CDS YP_682984.1 110679977 4195925 2640503..2640982 1 NC_008209.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2640982 ispF 4195925 ispF Roseobacter denitrificans OCh 114 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_682984.1 2640503 D 375451 CDS YP_682985.1 110679978 4195926 2640979..2641473 1 NC_008209.1 phosphatidylglycerophosphatase A 2641473 pgpA 4195926 pgpA Roseobacter denitrificans OCh 114 phosphatidylglycerophosphatase A YP_682985.1 2640979 D 375451 CDS YP_682986.1 110679979 4195520 2641475..2641942 1 NC_008209.1 competence/damage-inducible protein CinA 2641942 cinA 4195520 cinA Roseobacter denitrificans OCh 114 competence/damage-inducible protein CinA YP_682986.1 2641475 D 375451 CDS YP_682987.1 110679980 4195521 complement(2641939..2642397) 1 NC_008209.1 hypothetical protein 2642397 4195521 RD1_2770 Roseobacter denitrificans OCh 114 hypothetical protein YP_682987.1 2641939 R 375451 CDS YP_682988.1 110679981 4195522 2642466..2643011 1 NC_008209.1 hypoxanthine phosphoribosyltransferase 2643011 hpt 4195522 hpt Roseobacter denitrificans OCh 114 hypoxanthine phosphoribosyltransferase YP_682988.1 2642466 D 375451 CDS YP_682989.1 110679982 4195523 complement(2643076..2643324) 1 NC_008209.1 hypothetical protein 2643324 4195523 RD1_2772 Roseobacter denitrificans OCh 114 hypothetical protein YP_682989.1 2643076 R 375451 CDS YP_682990.1 110679983 4195524 complement(2643393..2644346) 1 NC_008209.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2644346 lipA 4195524 lipA Roseobacter denitrificans OCh 114 lipoyl synthase YP_682990.1 2643393 R 375451 CDS YP_682991.1 110679984 4195525 complement(2644444..2645055) 1 NC_008209.1 hypothetical protein 2645055 4195525 RD1_2774 Roseobacter denitrificans OCh 114 hypothetical protein YP_682991.1 2644444 R 375451 CDS YP_682992.1 110679985 4195526 complement(2645245..2646429) 1 NC_008209.1 hypothetical protein 2646429 4195526 RD1_2775 Roseobacter denitrificans OCh 114 hypothetical protein YP_682992.1 2645245 R 375451 CDS YP_682993.1 110679986 4195527 2646693..2647043 1 NC_008209.1 hypothetical protein 2647043 4195527 RD1_2776 Roseobacter denitrificans OCh 114 hypothetical protein YP_682993.1 2646693 D 375451 CDS YP_682994.1 110679987 4195528 complement(2647036..2648619) 1 NC_008209.1 trimethylamine methyltransferase family protein 2648619 4195528 RD1_2777 Roseobacter denitrificans OCh 114 trimethylamine methyltransferase family protein YP_682994.1 2647036 R 375451 CDS YP_682995.1 110679988 4195529 2648777..2650345 1 NC_008209.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2650345 guaA 4195529 guaA Roseobacter denitrificans OCh 114 GMP synthase YP_682995.1 2648777 D 375451 CDS YP_682996.1 110679989 4195530 2650386..2651249 1 NC_008209.1 hypothetical protein 2651249 4195530 RD1_2779 Roseobacter denitrificans OCh 114 hypothetical protein YP_682996.1 2650386 D 375451 CDS YP_682997.1 110679990 4195531 2651383..2652504 1 NC_008209.1 long-chain fatty acid protein 2652504 4195531 RD1_2780 Roseobacter denitrificans OCh 114 long-chain fatty acid protein YP_682997.1 2651383 D 375451 CDS YP_682998.1 110679991 4195532 2652517..2652615 1 NC_008209.1 hypothetical protein 2652615 4195532 RD1_2781 Roseobacter denitrificans OCh 114 hypothetical protein YP_682998.1 2652517 D 375451 CDS YP_682999.1 110679992 4195533 2652612..2653523 1 NC_008209.1 transmembrane drug/metabolite transporter family protein 2653523 4195533 RD1_2782 Roseobacter denitrificans OCh 114 transmembrane drug/metabolite transporter family protein YP_682999.1 2652612 D 375451 CDS YP_683000.1 110679993 4195534 2653601..2654449 1 NC_008209.1 hypothetical protein 2654449 4195534 RD1_2783 Roseobacter denitrificans OCh 114 hypothetical protein YP_683000.1 2653601 D 375451 CDS YP_683001.1 110679994 4195535 2654541..2655458 1 NC_008209.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 2655458 metA 4195535 metA Roseobacter denitrificans OCh 114 homoserine O-succinyltransferase YP_683001.1 2654541 D 375451 CDS YP_683002.1 110679995 4195536 2655442..2656422 1 NC_008209.1 hydrolase 2656422 4195536 RD1_2785 Roseobacter denitrificans OCh 114 hydrolase YP_683002.1 2655442 D 375451 CDS YP_683003.1 110679996 4195537 2656471..2657340 1 NC_008209.1 polyphosphate kinase 2657340 4195537 RD1_2786 Roseobacter denitrificans OCh 114 polyphosphate kinase YP_683003.1 2656471 D 375451 CDS YP_683004.1 110679997 4195538 2657300..2657956 1 NC_008209.1 TetR family transcriptional regulator 2657956 4195538 RD1_2787 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_683004.1 2657300 D 375451 CDS YP_683005.1 110679998 4195928 2658347..2658961 1 NC_008209.1 ExoD family exopolysaccharide synthesis protein 2658961 4195928 RD1_2789 Roseobacter denitrificans OCh 114 ExoD family exopolysaccharide synthesis protein YP_683005.1 2658347 D 375451 CDS YP_683006.1 110679999 4195929 2658946..2659413 1 NC_008209.1 disulfide bond formation protein 2659413 4195929 RD1_2790 Roseobacter denitrificans OCh 114 disulfide bond formation protein YP_683006.1 2658946 D 375451 CDS YP_683007.1 110680000 4195930 complement(2659504..2660664) 1 NC_008209.1 monooxygenase 2660664 4195930 RD1_2791 Roseobacter denitrificans OCh 114 monooxygenase YP_683007.1 2659504 R 375451 CDS YP_683008.1 110680001 4195931 complement(2660735..2661157) 1 NC_008209.1 dnaK suppressor protein 2661157 dksA 4195931 dksA Roseobacter denitrificans OCh 114 dnaK suppressor protein YP_683008.1 2660735 R 375451 CDS YP_683009.1 110680002 4195932 2661301..2662164 1 NC_008209.1 AAA ATPase 2662164 4195932 RD1_2793 Roseobacter denitrificans OCh 114 AAA ATPase YP_683009.1 2661301 D 375451 CDS YP_683010.1 110680003 4195933 2662278..2662733 1 NC_008209.1 acetyltransferase 2662733 4195933 RD1_2794 Roseobacter denitrificans OCh 114 acetyltransferase YP_683010.1 2662278 D 375451 CDS YP_683011.1 110680004 4195934 2662730..2664094 1 NC_008209.1 hypothetical protein 2664094 4195934 RD1_2795 Roseobacter denitrificans OCh 114 hypothetical protein YP_683011.1 2662730 D 375451 CDS YP_683012.1 110680005 4195935 2664329..2665516 1 NC_008209.1 hypothetical protein 2665516 4195935 RD1_2796 Roseobacter denitrificans OCh 114 hypothetical protein YP_683012.1 2664329 D 375451 CDS YP_683013.1 110680006 4195936 2665596..2666291 1 NC_008209.1 M48 family peptidase 2666291 4195936 RD1_2797 Roseobacter denitrificans OCh 114 M48 family peptidase YP_683013.1 2665596 D 375451 CDS YP_683014.1 110680007 4195937 complement(2666472..2667011) 1 NC_008209.1 hypothetical protein 2667011 4195937 RD1_2798 Roseobacter denitrificans OCh 114 hypothetical protein YP_683014.1 2666472 R 375451 CDS YP_683015.1 110680008 4195938 complement(2667016..2668239) 1 NC_008209.1 hypothetical protein 2668239 4195938 RD1_2799 Roseobacter denitrificans OCh 114 hypothetical protein YP_683015.1 2667016 R 375451 CDS YP_683016.1 110680009 4195939 complement(2668334..2668603) 1 NC_008209.1 hypothetical protein 2668603 4195939 RD1_2801 Roseobacter denitrificans OCh 114 hypothetical protein YP_683016.1 2668334 R 375451 CDS YP_683017.1 110680010 4195940 complement(2668600..2671392) 1 NC_008209.1 glutamate-ammonia-ligase adenylyltransferase 2671392 glnE 4195940 glnE Roseobacter denitrificans OCh 114 glutamate-ammonia-ligase adenylyltransferase YP_683017.1 2668600 R 375451 CDS YP_683018.1 110680011 4195941 2671669..2672088 1 NC_008209.1 hypothetical protein 2672088 4195941 RD1_2803 Roseobacter denitrificans OCh 114 hypothetical protein YP_683018.1 2671669 D 375451 CDS YP_683019.1 110680012 4195942 2672155..2672595 1 NC_008209.1 RD1_D family protein 2672595 4195942 RD1_2804 Roseobacter denitrificans OCh 114 RD1_D family protein YP_683019.1 2672155 D 375451 CDS YP_683020.1 110680013 4195943 2672621..2673481 1 NC_008209.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2673481 ate 4195943 ate Roseobacter denitrificans OCh 114 arginyl-tRNA-protein transferase YP_683020.1 2672621 D 375451 CDS YP_683021.1 110680014 4195944 complement(2673622..2675976) 1 NC_008209.1 TRAP C4-dicarboxylate transport system permease DctM 2675976 4195944 RD1_2806 Roseobacter denitrificans OCh 114 TRAP C4-dicarboxylate transport system permease DctM YP_683021.1 2673622 R 375451 CDS YP_683022.1 110680015 4195945 complement(2676039..2676716) 1 NC_008209.1 hypothetical protein 2676716 4195945 RD1_2807 Roseobacter denitrificans OCh 114 hypothetical protein YP_683022.1 2676039 R 375451 CDS YP_683023.1 110680016 4195579 complement(2677095..2678183) 1 NC_008209.1 mannitol ABC transporter substrate-binding protein 2678183 4195579 RD1_2809 Roseobacter denitrificans OCh 114 mannitol ABC transporter substrate-binding protein YP_683023.1 2677095 R 375451 CDS YP_683024.1 110680017 4195580 2678435..2679868 1 NC_008209.1 sensor protein degS 2679868 degS 4195580 degS Roseobacter denitrificans OCh 114 sensor protein degS YP_683024.1 2678435 D 375451 CDS YP_683025.1 110680018 4195581 2679865..2680515 1 NC_008209.1 transcription regulatory protein degU 2680515 degU 4195581 degU Roseobacter denitrificans OCh 114 transcription regulatory protein degU YP_683025.1 2679865 D 375451 CDS YP_683026.1 110680019 4195582 2680972..2682723 1 NC_008209.1 acetolactate synthase 3 catalytic subunit 2682723 ilvB 4195582 ilvB Roseobacter denitrificans OCh 114 acetolactate synthase 3 catalytic subunit YP_683026.1 2680972 D 375451 CDS YP_683027.1 110680020 4195583 2683020..2683580 1 NC_008209.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2683580 ilvH 4195583 ilvH Roseobacter denitrificans OCh 114 acetolactate synthase 3 regulatory subunit YP_683027.1 2683020 D 375451 CDS YP_683028.1 110680021 4195584 complement(2683598..2683930) 1 NC_008209.1 hypothetical protein 2683930 4195584 RD1_2814 Roseobacter denitrificans OCh 114 hypothetical protein YP_683028.1 2683598 R 375451 CDS YP_683029.1 110680022 4195585 2684165..2684962 1 NC_008209.1 DNA-binding protein 2684962 4195585 RD1_2815 Roseobacter denitrificans OCh 114 DNA-binding protein YP_683029.1 2684165 D 375451 CDS YP_683030.1 110680023 4195586 2685068..2686228 1 NC_008209.1 Rieske (2Fe-2S) domain-containing protein 2686228 4195586 RD1_2816 Roseobacter denitrificans OCh 114 Rieske (2Fe-2S) domain-containing protein YP_683030.1 2685068 D 375451 CDS YP_683031.1 110680024 4195587 2686228..2686443 1 NC_008209.1 hypothetical protein 2686443 4195587 RD1_2817 Roseobacter denitrificans OCh 114 hypothetical protein YP_683031.1 2686228 D 375451 CDS YP_683032.1 110680025 4195588 complement(2686539..2687300) 1 NC_008209.1 hypothetical protein 2687300 4195588 RD1_2818 Roseobacter denitrificans OCh 114 hypothetical protein YP_683032.1 2686539 R 375451 CDS YP_683033.1 110680026 4195589 complement(2687396..2688520) 1 NC_008209.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 2688520 prfB 4195589 prfB Roseobacter denitrificans OCh 114 peptide chain release factor 2 YP_683033.1 2687396 R 375451 CDS YP_683034.1 110680027 4195590 complement(2688606..2691161) 1 NC_008209.1 penicillin-binding protein 1A 2691161 mrcA 4195590 mrcA Roseobacter denitrificans OCh 114 penicillin-binding protein 1A YP_683034.1 2688606 R 375451 CDS YP_683035.1 110680028 4195591 complement(2691254..2692471) 1 NC_008209.1 N-acetylmuramoyl-L-alanine amidase 2692471 amiC 4195591 amiC Roseobacter denitrificans OCh 114 N-acetylmuramoyl-L-alanine amidase YP_683035.1 2691254 R 375451 CDS YP_683036.1 110680029 4195592 complement(2692533..2693675) 1 NC_008209.1 aspartate aminotransferase 2693675 aspB 4195592 aspB Roseobacter denitrificans OCh 114 aspartate aminotransferase YP_683036.1 2692533 R 375451 CDS YP_683037.1 110680030 4195593 2693674..2695029 1 NC_008209.1 M48 family peptidase 2695029 4195593 RD1_2823 Roseobacter denitrificans OCh 114 M48 family peptidase YP_683037.1 2693674 D 375451 CDS YP_683038.1 110680031 4195594 2695033..2695782 1 NC_008209.1 outer membrane protein 2695782 4195594 RD1_2824 Roseobacter denitrificans OCh 114 outer membrane protein YP_683038.1 2695033 D 375451 CDS YP_683039.1 110680032 4195595 complement(2695792..2696952) 1 NC_008209.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2696952 ispG 4195595 ispG Roseobacter denitrificans OCh 114 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_683039.1 2695792 R 375451 CDS YP_683040.1 110680033 4195596 complement(2697009..2698253) 1 NC_008209.1 hypothetical protein 2698253 4195596 RD1_2826 Roseobacter denitrificans OCh 114 hypothetical protein YP_683040.1 2697009 R 375451 CDS YP_683041.1 110680034 4195597 complement(2698389..2699612) 1 NC_008209.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 2699612 hemA 4195597 hemA Roseobacter denitrificans OCh 114 5-aminolevulinate synthase YP_683041.1 2698389 R 375451 CDS YP_683042.1 110680035 4195285 2699808..2701178 1 NC_008209.1 hypothetical protein 2701178 4195285 RD1_2828 Roseobacter denitrificans OCh 114 hypothetical protein YP_683042.1 2699808 D 375451 CDS YP_683043.1 110680036 4195286 2701178..2702050 1 NC_008209.1 haloacetate dehalogenase H-1 2702050 dehH1 4195286 dehH1 Roseobacter denitrificans OCh 114 haloacetate dehalogenase H-1 YP_683043.1 2701178 D 375451 CDS YP_683044.1 110680037 4195288 complement(2702390..2703328) 1 NC_008209.1 pirin 2703328 4195288 RD1_2831 Roseobacter denitrificans OCh 114 pirin YP_683044.1 2702390 R 375451 CDS YP_683045.1 110680038 4195289 complement(2703481..2703855) 1 NC_008209.1 hypothetical protein 2703855 4195289 RD1_2832 Roseobacter denitrificans OCh 114 hypothetical protein YP_683045.1 2703481 R 375451 CDS YP_683046.1 110680039 4195291 complement(2704687..2705256) 1 NC_008209.1 phosphoglycerate mutase 2705256 4195291 RD1_2834 Roseobacter denitrificans OCh 114 phosphoglycerate mutase YP_683046.1 2704687 R 375451 CDS YP_683047.1 110680040 4195292 complement(2705465..2705767) 1 NC_008209.1 hypothetical protein 2705767 4195292 RD1_2835 Roseobacter denitrificans OCh 114 hypothetical protein YP_683047.1 2705465 R 375451 CDS YP_683048.1 110680041 4195293 2706208..2706432 1 NC_008209.1 hypothetical protein 2706432 4195293 RD1_2836 Roseobacter denitrificans OCh 114 hypothetical protein YP_683048.1 2706208 D 375451 CDS YP_683049.1 110680042 4195294 2706579..2707004 1 NC_008209.1 hypothetical protein 2707004 4195294 RD1_2837 Roseobacter denitrificans OCh 114 hypothetical protein YP_683049.1 2706579 D 375451 CDS YP_683050.1 110680043 4195295 complement(2707021..2708169) 1 NC_008209.1 hypothetical protein 2708169 4195295 RD1_2838 Roseobacter denitrificans OCh 114 hypothetical protein YP_683050.1 2707021 R 375451 CDS YP_683051.1 110680044 4195296 complement(2708295..2710979) 1 NC_008209.1 sensor histidine kinase 2710979 4195296 RD1_2839 Roseobacter denitrificans OCh 114 sensor histidine kinase YP_683051.1 2708295 R 375451 CDS YP_683052.1 110680045 4195297 complement(2710985..2711266) 1 NC_008209.1 hypothetical protein 2711266 4195297 RD1_2840 Roseobacter denitrificans OCh 114 hypothetical protein YP_683052.1 2710985 R 375451 CDS YP_683053.1 110680046 4195298 complement(2711271..2711654) 1 NC_008209.1 response regulator receiver domain-containing protein 2711654 4195298 RD1_2841 Roseobacter denitrificans OCh 114 response regulator receiver domain-containing protein YP_683053.1 2711271 R 375451 CDS YP_683054.1 110680047 4195299 complement(2711835..2713124) 1 NC_008209.1 transcriptional regulator 2713124 4195299 RD1_2842 Roseobacter denitrificans OCh 114 transcriptional regulator YP_683054.1 2711835 R 375451 CDS YP_683055.1 110680048 4195300 2713364..2714716 1 NC_008209.1 branched-chain amino acid ABC transporter substrate-binding protein 2714716 4195300 RD1_2843 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter substrate-binding protein YP_683055.1 2713364 D 375451 CDS YP_683056.1 110680049 4195301 2714804..2715835 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2715835 4195301 RD1_2844 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_683056.1 2714804 D 375451 CDS YP_683057.1 110680050 4195302 2715840..2717039 1 NC_008209.1 branched-chain amino acid ABC transporter permease 2717039 4195302 RD1_2845 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_683057.1 2715840 D 375451 CDS YP_683058.1 110680051 4196043 2717052..2717816 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 2717816 4196043 RD1_2846 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_683058.1 2717052 D 375451 CDS YP_683059.1 110680052 4196044 2717829..2718584 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 2718584 4196044 RD1_2847 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_683059.1 2717829 D 375451 CDS YP_683060.1 110680053 4196045 complement(2718710..2719468) 1 NC_008209.1 pyrroline-5-carboxylate reductase 2719468 4196045 RD1_2848 Roseobacter denitrificans OCh 114 pyrroline-5-carboxylate reductase YP_683060.1 2718710 R 375451 CDS YP_683061.1 110680054 4196046 complement(2719557..2721062) 1 NC_008209.1 AMP-binding protein 2721062 4196046 RD1_2849 Roseobacter denitrificans OCh 114 AMP-binding protein YP_683061.1 2719557 R 375451 CDS YP_683062.1 110680055 4196047 2721214..2721696 1 NC_008209.1 acetyl-CoA carboxylase, biotin carboxyl carrier protein 2721696 accB 4196047 accB Roseobacter denitrificans OCh 114 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_683062.1 2721214 D 375451 CDS YP_683063.1 110680056 4196048 2721708..2723060 1 NC_008209.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2723060 accC 4196048 accC Roseobacter denitrificans OCh 114 acetyl-CoA carboxylase biotin carboxylase subunit YP_683063.1 2721708 D 375451 CDS YP_683064.1 110680057 4196049 2723073..2723705 1 NC_008209.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2723705 aat 4196049 aat Roseobacter denitrificans OCh 114 leucyl/phenylalanyl-tRNA--protein transferase YP_683064.1 2723073 D 375451 CDS YP_683065.1 110680058 4196050 complement(2723669..2724028) 1 NC_008209.1 hypothetical protein 2724028 4196050 RD1_2853 Roseobacter denitrificans OCh 114 hypothetical protein YP_683065.1 2723669 R 375451 CDS YP_683066.1 110680059 4196051 complement(2724025..2724471) 1 NC_008209.1 mce-like protein 2724471 4196051 RD1_2854 Roseobacter denitrificans OCh 114 mce-like protein YP_683066.1 2724025 R 375451 CDS YP_683067.1 110680060 4196052 complement(2724477..2724860) 1 NC_008209.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 2724860 4196052 RD1_2855 Roseobacter denitrificans OCh 114 NADH dehydrogenase YP_683067.1 2724477 R 375451 CDS YP_683068.1 110680061 4196053 complement(2724942..2725304) 1 NC_008209.1 endoribonuclease L-PSP family protein 2725304 4196053 RD1_2856 Roseobacter denitrificans OCh 114 endoribonuclease L-PSP family protein YP_683068.1 2724942 R 375451 CDS YP_683069.1 110680062 4196054 complement(2725435..2726700) 1 NC_008209.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2726700 clpX 4196054 clpX Roseobacter denitrificans OCh 114 ATP-dependent protease ATP-binding subunit ClpX YP_683069.1 2725435 R 375451 CDS YP_683070.1 110680063 4196055 complement(2726839..2727465) 1 NC_008209.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2727465 clpP 4196055 clpP Roseobacter denitrificans OCh 114 ATP-dependent Clp protease proteolytic subunit YP_683070.1 2726839 R 375451 CDS YP_683071.1 110680064 4196056 2727412..2728818 1 NC_008209.1 deoxyribodipyrimidine photo-lyase 2728818 4196056 RD1_2859 Roseobacter denitrificans OCh 114 deoxyribodipyrimidine photo-lyase YP_683071.1 2727412 D 375451 CDS YP_683072.1 110680065 4196057 complement(2729068..2730126) 1 NC_008209.1 lactose ABC transporter ATP-binding protein 2730126 lacK 4196057 lacK Roseobacter denitrificans OCh 114 lactose ABC transporter ATP-binding protein YP_683072.1 2729068 R 375451 CDS YP_683073.1 110680066 4196058 complement(2730131..2730922) 1 NC_008209.1 IclR family transcriptional regulator 2730922 4196058 RD1_2861 Roseobacter denitrificans OCh 114 IclR family transcriptional regulator YP_683073.1 2730131 R 375451 CDS YP_683074.1 110680067 4196059 2731154..2732413 1 NC_008209.1 ABC transporter substrate-binding protein 2732413 4196059 RD1_2862 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_683074.1 2731154 D 375451 CDS YP_683075.1 110680068 4196060 2732512..2733438 1 NC_008209.1 sugar ABC transporter permease 2733438 4196060 RD1_2863 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683075.1 2732512 D 375451 CDS YP_683076.1 110680069 4196061 2733507..2734355 1 NC_008209.1 ABC transporter permease 2734355 4196061 RD1_2864 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683076.1 2733507 D 375451 CDS YP_683077.1 110680070 4196023 2734352..2736436 1 NC_008209.1 alpha-galactosidase 2736436 rafA 4196023 rafA Roseobacter denitrificans OCh 114 alpha-galactosidase YP_683077.1 2734352 D 375451 CDS YP_683078.1 110680071 4196024 2736537..2737307 1 NC_008209.1 oxidoreductase 2737307 4196024 RD1_2866 Roseobacter denitrificans OCh 114 oxidoreductase YP_683078.1 2736537 D 375451 CDS YP_683079.1 110680072 4196025 2737315..2738220 1 NC_008209.1 2-dehydro-3-deoxygalactonokinase 2738220 dgoK 4196025 dgoK Roseobacter denitrificans OCh 114 2-dehydro-3-deoxygalactonokinase YP_683079.1 2737315 D 375451 CDS YP_683080.1 110680073 4196026 2738217..2738822 1 NC_008209.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 2738822 dgoA 4196026 dgoA Roseobacter denitrificans OCh 114 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_683080.1 2738217 D 375451 CDS YP_683081.1 110680074 4196027 2738962..2740872 1 NC_008209.1 beta-galactosidase 2740872 bgaT 4196027 bgaT Roseobacter denitrificans OCh 114 beta-galactosidase YP_683081.1 2738962 D 375451 CDS YP_683082.1 110680075 4196028 complement(2740877..2742508) 1 NC_008209.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2742508 pgm 4196028 pgm Roseobacter denitrificans OCh 114 phosphoglucomutase YP_683082.1 2740877 R 375451 CDS YP_683083.1 110680076 4196029 complement(2742505..2744502) 1 NC_008209.1 4-alpha-glucanotransferase 2744502 malQ 4196029 malQ Roseobacter denitrificans OCh 114 4-alpha-glucanotransferase YP_683083.1 2742505 R 375451 CDS YP_683084.1 110680077 4196030 complement(2744492..2746588) 1 NC_008209.1 glycogen debranching protein 2746588 glgX 4196030 glgX Roseobacter denitrificans OCh 114 glycogen debranching protein YP_683084.1 2744492 R 375451 CDS YP_683085.1 110680078 4196031 complement(2746598..2748037) 1 NC_008209.1 glycogen synthase 2748037 4196031 RD1_2873 Roseobacter denitrificans OCh 114 glycogen synthase YP_683085.1 2746598 R 375451 CDS YP_683086.1 110680079 4196032 complement(2748039..2749298) 1 NC_008209.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 2749298 glgC 4196032 glgC Roseobacter denitrificans OCh 114 glucose-1-phosphate adenylyltransferase YP_683086.1 2748039 R 375451 CDS YP_683087.1 110680080 4196033 complement(2749344..2751539) 1 NC_008209.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2751539 glgB 4196033 glgB Roseobacter denitrificans OCh 114 glycogen branching protein YP_683087.1 2749344 R 375451 CDS YP_683088.1 110680081 4196034 complement(2751553..2753976) 1 NC_008209.1 glycogen phosphorylase 2753976 glgP 4196034 glgP Roseobacter denitrificans OCh 114 glycogen phosphorylase YP_683088.1 2751553 R 375451 CDS YP_683089.1 110680082 4196035 complement(2754068..2755000) 1 NC_008209.1 fructokinase 2755000 frk 4196035 frk Roseobacter denitrificans OCh 114 fructokinase YP_683089.1 2754068 R 375451 CDS YP_683090.1 110680083 4196036 complement(2755032..2755673) 1 NC_008209.1 KHG/KDPG aldolase 2755673 eda 4196036 eda Roseobacter denitrificans OCh 114 KHG/KDPG aldolase YP_683090.1 2755032 R 375451 CDS YP_683091.1 110680084 4196037 complement(2755689..2757494) 1 NC_008209.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2757494 edd 4196037 edd Roseobacter denitrificans OCh 114 phosphogluconate dehydratase YP_683091.1 2755689 R 375451 CDS YP_683092.1 110680085 4196038 complement(2757540..2758547) 1 NC_008209.1 glyceraldehyde-3-phosphate dehydrogenase 2758547 gap 4196038 gap Roseobacter denitrificans OCh 114 glyceraldehyde-3-phosphate dehydrogenase YP_683092.1 2757540 R 375451 CDS YP_683093.1 110680086 4196039 complement(2758712..2759890) 1 NC_008209.1 alcohol dehydrogenase 2759890 4196039 RD1_2882 Roseobacter denitrificans OCh 114 alcohol dehydrogenase YP_683093.1 2758712 R 375451 CDS YP_683094.1 110680087 4196040 complement(2759871..2761358) 1 NC_008209.1 glycerol kinase 2761358 glpK 4196040 glpK Roseobacter denitrificans OCh 114 glycerol kinase YP_683094.1 2759871 R 375451 CDS YP_683095.1 110680088 4196041 complement(2761375..2762973) 1 NC_008209.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 2762973 glpD 4196041 glpD Roseobacter denitrificans OCh 114 glycerol-3-phosphate dehydrogenase YP_683095.1 2761375 R 375451 CDS YP_683096.1 110680089 4196042 2763165..2763926 1 NC_008209.1 glycerol-3-phosphate regulon repressor 2763926 glpR 4196042 glpR Roseobacter denitrificans OCh 114 glycerol-3-phosphate regulon repressor YP_683096.1 2763165 D 375451 CDS YP_683097.1 110680090 4196062 complement(2764163..2765077) 1 NC_008209.1 hypothetical protein 2765077 4196062 RD1_2887 Roseobacter denitrificans OCh 114 hypothetical protein YP_683097.1 2764163 R 375451 CDS YP_683098.1 110680091 4196063 complement(2765074..2767131) 1 NC_008209.1 hypothetical protein 2767131 4196063 RD1_2888 Roseobacter denitrificans OCh 114 hypothetical protein YP_683098.1 2765074 R 375451 CDS YP_683099.1 110680092 4196064 complement(2767649..2768626) 1 NC_008209.1 ornithine cyclodeaminase/mu-crystallin family protein 2768626 4196064 RD1_2889 Roseobacter denitrificans OCh 114 ornithine cyclodeaminase/mu-crystallin family protein YP_683099.1 2767649 R 375451 CDS YP_683100.1 110680093 4196065 complement(2768708..2769871) 1 NC_008209.1 threonine aldolase 2769871 4196065 RD1_2890 Roseobacter denitrificans OCh 114 threonine aldolase YP_683100.1 2768708 R 375451 CDS YP_683101.1 110680094 4196066 complement(2769884..2770855) 1 NC_008209.1 serine racemase 2770855 srr 4196066 srr Roseobacter denitrificans OCh 114 serine racemase YP_683101.1 2769884 R 375451 CDS YP_683102.1 110680095 4196067 complement(2770866..2772056) 1 NC_008209.1 serine--glyoxylate aminotransferase 2772056 sgaA 4196067 sgaA Roseobacter denitrificans OCh 114 serine--glyoxylate aminotransferase YP_683102.1 2770866 R 375451 CDS YP_683103.1 110680096 4196068 2772262..2773119 1 NC_008209.1 acetate operon repressor 2773119 iclR 4196068 iclR Roseobacter denitrificans OCh 114 acetate operon repressor YP_683103.1 2772262 D 375451 CDS YP_683104.1 110680097 4196069 2773243..2773914 1 NC_008209.1 transcriptional regulator 2773914 4196069 RD1_2894 Roseobacter denitrificans OCh 114 transcriptional regulator YP_683104.1 2773243 D 375451 CDS YP_683105.1 110680098 4196070 complement(2774151..2775341) 1 NC_008209.1 formate dehydrogenase subunit gamma 2775341 fdhI 4196070 fdhI Roseobacter denitrificans OCh 114 formate dehydrogenase subunit gamma YP_683105.1 2774151 R 375451 CDS YP_683106.1 110680099 4196071 complement(2775421..2776017) 1 NC_008209.1 formate dehydrogenase Fe-S subunit 2776017 fdhB 4196071 fdhB Roseobacter denitrificans OCh 114 formate dehydrogenase Fe-S subunit YP_683106.1 2775421 R 375451 CDS YP_683107.1 110680100 4196072 complement(2776033..2778915) 1 NC_008209.1 formate dehydrogenase subunit alpha 2778915 fdhA 4196072 fdhA Roseobacter denitrificans OCh 114 formate dehydrogenase subunit alpha YP_683107.1 2776033 R 375451 CDS YP_683108.1 110680101 4196073 complement(2779010..2779201) 1 NC_008209.1 twin-arginine translocation pathway signal sequence domain-containing protein 2779201 4196073 RD1_2898 Roseobacter denitrificans OCh 114 twin-arginine translocation pathway signal sequence domain-containing protein YP_683108.1 2779010 R 375451 CDS YP_683109.1 110680102 4196074 complement(2779253..2779861) 1 NC_008209.1 chaperone TorD 2779861 torD 4196074 torD Roseobacter denitrificans OCh 114 chaperone TorD YP_683109.1 2779253 R 375451 CDS YP_683110.1 110680103 4196075 complement(2779858..2780463) 1 NC_008209.1 hypothetical protein 2780463 4196075 RD1_2900 Roseobacter denitrificans OCh 114 hypothetical protein YP_683110.1 2779858 R 375451 CDS YP_683111.1 110680104 4196076 complement(2780460..2781026) 1 NC_008209.1 hypothetical protein 2781026 4196076 RD1_2901 Roseobacter denitrificans OCh 114 hypothetical protein YP_683111.1 2780460 R 375451 CDS YP_683112.1 110680105 4196077 2781358..2783313 1 NC_008209.1 (Fe-S)-binding protein 2783313 4196077 RD1_2902 Roseobacter denitrificans OCh 114 (Fe-S)-binding protein YP_683112.1 2781358 D 375451 CDS YP_683113.1 110680106 4196078 complement(2783307..2784110) 1 NC_008209.1 hypothetical protein 2784110 4196078 RD1_2903 Roseobacter denitrificans OCh 114 hypothetical protein YP_683113.1 2783307 R 375451 CDS YP_683114.1 110680107 4196079 complement(2784110..2784346) 1 NC_008209.1 hypothetical protein 2784346 4196079 RD1_2904 Roseobacter denitrificans OCh 114 hypothetical protein YP_683114.1 2784110 R 375451 CDS YP_683115.1 110680108 4196080 2784137..2784334 1 NC_008209.1 hypothetical protein 2784334 4196080 RD1_2905 Roseobacter denitrificans OCh 114 hypothetical protein YP_683115.1 2784137 D 375451 CDS YP_683116.1 110680109 4195808 2784334..2785401 1 NC_008209.1 hypothetical protein 2785401 4195808 RD1_2906 Roseobacter denitrificans OCh 114 hypothetical protein YP_683116.1 2784334 D 375451 CDS YP_683117.1 110680110 4195809 2785398..2786102 1 NC_008209.1 hypothetical protein 2786102 4195809 RD1_2907 Roseobacter denitrificans OCh 114 hypothetical protein YP_683117.1 2785398 D 375451 CDS YP_683118.1 110680111 4195810 2786099..2786593 1 NC_008209.1 hypothetical protein 2786593 4195810 RD1_2908 Roseobacter denitrificans OCh 114 hypothetical protein YP_683118.1 2786099 D 375451 CDS YP_683119.1 110680112 4195811 complement(2786597..2787403) 1 NC_008209.1 tungstate ABC transporter tungstate-binding protein 2787403 4195811 RD1_2909 Roseobacter denitrificans OCh 114 tungstate ABC transporter tungstate-binding protein YP_683119.1 2786597 R 375451 CDS YP_683120.1 110680113 4195812 complement(2787400..2788110) 1 NC_008209.1 tungstate ABC transporter ATP-binding protein 2788110 4195812 RD1_2910 Roseobacter denitrificans OCh 114 tungstate ABC transporter ATP-binding protein YP_683120.1 2787400 R 375451 CDS YP_683121.1 110680114 4195813 complement(2788110..2788832) 1 NC_008209.1 tungstate ABC transporter permease 2788832 4195813 RD1_2911 Roseobacter denitrificans OCh 114 tungstate ABC transporter permease YP_683121.1 2788110 R 375451 CDS YP_683122.1 110680115 4195814 2789041..2789784 1 NC_008209.1 hypothetical protein 2789784 4195814 RD1_2912 Roseobacter denitrificans OCh 114 hypothetical protein YP_683122.1 2789041 D 375451 CDS YP_683123.1 110680116 4195815 2789801..2790649 1 NC_008209.1 molybdate ABC transporter substrate-binding protein 2790649 modA 4195815 modA Roseobacter denitrificans OCh 114 molybdate ABC transporter substrate-binding protein YP_683123.1 2789801 D 375451 CDS YP_683124.1 110680117 4195816 2790658..2791350 1 NC_008209.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 2791350 modB 4195816 modB Roseobacter denitrificans OCh 114 molybdate ABC transporter permease YP_683124.1 2790658 D 375451 CDS YP_683125.1 110680118 4195817 2791347..2792444 1 NC_008209.1 molybdate ABC transporter ATP-binding protein 2792444 modC 4195817 modC Roseobacter denitrificans OCh 114 molybdate ABC transporter ATP-binding protein YP_683125.1 2791347 D 375451 CDS YP_683126.1 110680119 4195818 complement(2792452..2793120) 1 NC_008209.1 hypothetical protein 2793120 4195818 RD1_2916 Roseobacter denitrificans OCh 114 hypothetical protein YP_683126.1 2792452 R 375451 CDS YP_683127.1 110680120 4195819 complement(2793198..2794658) 1 NC_008209.1 hypothetical protein 2794658 4195819 RD1_2917 Roseobacter denitrificans OCh 114 hypothetical protein YP_683127.1 2793198 R 375451 CDS YP_683128.1 110680121 4195820 complement(2794691..2796094) 1 NC_008209.1 aldehyde-alcohol dehydrogenase 2796094 adhE 4195820 adhE Roseobacter denitrificans OCh 114 aldehyde-alcohol dehydrogenase YP_683128.1 2794691 R 375451 CDS YP_683129.1 110680122 4195821 complement(2796156..2797124) 1 NC_008209.1 hypothetical protein 2797124 4195821 RD1_2920 Roseobacter denitrificans OCh 114 hypothetical protein YP_683129.1 2796156 R 375451 CDS YP_683130.1 110680123 4195822 complement(2797170..2797640) 1 NC_008209.1 hypothetical protein 2797640 4195822 RD1_2921 Roseobacter denitrificans OCh 114 hypothetical protein YP_683130.1 2797170 R 375451 CDS YP_683131.1 110680124 4195823 complement(2797637..2799148) 1 NC_008209.1 hypothetical protein 2799148 4195823 RD1_2922 Roseobacter denitrificans OCh 114 hypothetical protein YP_683131.1 2797637 R 375451 CDS YP_683132.1 110680125 4195824 2799241..2800278 1 NC_008209.1 LacI family transcriptional regulator 2800278 4195824 RD1_2923 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_683132.1 2799241 D 375451 CDS YP_683133.1 110680126 4195825 complement(2800286..2801329) 1 NC_008209.1 malonyl CoA-ACP transacylase 2801329 fabD 4195825 fabD Roseobacter denitrificans OCh 114 malonyl CoA-ACP transacylase YP_683133.1 2800286 R 375451 CDS YP_683134.1 110680127 4195826 complement(2801326..2803515) 1 NC_008209.1 pyruvate dehydrogenase E1 subunit beta 2803515 pdhB 4195826 pdhB Roseobacter denitrificans OCh 114 pyruvate dehydrogenase E1 subunit beta YP_683134.1 2801326 R 375451 CDS YP_683135.1 110680128 4195827 complement(2803633..2806986) 1 NC_008209.1 hypothetical protein 2806986 4195827 RD1_2927 Roseobacter denitrificans OCh 114 hypothetical protein YP_683135.1 2803633 R 375451 CDS YP_683136.1 110680129 4195751 complement(2807072..2808340) 1 NC_008209.1 hypothetical protein 2808340 4195751 RD1_2928 Roseobacter denitrificans OCh 114 hypothetical protein YP_683136.1 2807072 R 375451 CDS YP_683137.1 110680130 4195752 complement(2808517..2808678) 1 NC_008209.1 hypothetical protein 2808678 4195752 RD1_2929 Roseobacter denitrificans OCh 114 hypothetical protein YP_683137.1 2808517 R 375451 CDS YP_683138.1 110680131 4195753 2808659..2809627 1 NC_008209.1 glycine betaine transporter substrate-binding protein 2809627 opuAC 4195753 opuAC Roseobacter denitrificans OCh 114 glycine betaine transporter substrate-binding protein YP_683138.1 2808659 D 375451 CDS YP_683139.1 110680132 4195754 2809700..2810734 1 NC_008209.1 glycine betaine transporter permease 2810734 opuAB 4195754 opuAB Roseobacter denitrificans OCh 114 glycine betaine transporter permease YP_683139.1 2809700 D 375451 CDS YP_683140.1 110680133 4195755 2810745..2811773 1 NC_008209.1 glycine betaine transporter ATP-binding protein 2811773 opuAA 4195755 opuAA Roseobacter denitrificans OCh 114 glycine betaine transporter ATP-binding protein YP_683140.1 2810745 D 375451 CDS YP_683141.1 110680134 4195756 complement(2811765..2813216) 1 NC_008209.1 D-mannonate oxidoreductase 2813216 uxuB 4195756 uxuB Roseobacter denitrificans OCh 114 D-mannonate oxidoreductase YP_683141.1 2811765 R 375451 CDS YP_683142.1 110680135 4195757 complement(2813213..2814619) 1 NC_008209.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 2814619 uxaC 4195757 uxaC Roseobacter denitrificans OCh 114 glucuronate isomerase YP_683142.1 2813213 R 375451 CDS YP_683143.1 110680136 4195758 complement(2814672..2815574) 1 NC_008209.1 glycerol-3-phosphate ABC transporter permease 2815574 4195758 RD1_2935 Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter permease YP_683143.1 2814672 R 375451 CDS YP_683144.1 110680137 4195759 complement(2815519..2816595) 1 NC_008209.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 2816595 ugpC 4195759 ugpC Roseobacter denitrificans OCh 114 glycerol-3-phosphate transporter ATP-binding subunit YP_683144.1 2815519 R 375451 CDS YP_683145.1 110680138 4195760 complement(2816595..2817440) 1 NC_008209.1 glycerol-3-phosphate ABC transporter permease 2817440 ugpE 4195760 ugpE Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter permease YP_683145.1 2816595 R 375451 CDS YP_683146.1 110680139 4195761 complement(2817440..2818318) 1 NC_008209.1 glycerol-3-phosphate ABC transporter permease 2818318 ugpA 4195761 ugpA Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter permease YP_683146.1 2817440 R 375451 CDS YP_683147.1 110680140 4195762 complement(2818392..2819687) 1 NC_008209.1 glycerol-3-phosphate ABC transporter substrate-binding protein 2819687 upgB 4195762 upgB Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter substrate-binding protein YP_683147.1 2818392 R 375451 CDS YP_683148.1 110680141 4195763 complement(2819870..2820400) 1 NC_008209.1 cyclic phosphodiesterase 2820400 4195763 RD1_2940 Roseobacter denitrificans OCh 114 cyclic phosphodiesterase YP_683148.1 2819870 R 375451 CDS YP_683149.1 110680142 4195764 2820572..2821651 1 NC_008209.1 O-acetylserine sulfhydrylase 2821651 cysK 4195764 cysK Roseobacter denitrificans OCh 114 O-acetylserine sulfhydrylase YP_683149.1 2820572 D 375451 CDS YP_683150.1 110680143 4195765 complement(2821685..2822689) 1 NC_008209.1 iron ABC transporter substrate-binding protein 2822689 4195765 RD1_2943 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_683150.1 2821685 R 375451 CDS YP_683151.1 110680144 4195766 complement(2822668..2824032) 1 NC_008209.1 two-component sensor protein 2824032 4195766 RD1_2944 Roseobacter denitrificans OCh 114 two-component sensor protein YP_683151.1 2822668 R 375451 CDS YP_683152.1 110680145 4195767 complement(2824025..2824690) 1 NC_008209.1 DNA-binding response regulator 2824690 tctD 4195767 tctD Roseobacter denitrificans OCh 114 DNA-binding response regulator YP_683152.1 2824025 R 375451 CDS YP_683153.1 110680146 4195768 2824799..2825785 1 NC_008209.1 hypothetical protein 2825785 4195768 RD1_2946 Roseobacter denitrificans OCh 114 hypothetical protein YP_683153.1 2824799 D 375451 CDS YP_683154.1 110680147 4195769 2825858..2826343 1 NC_008209.1 hypothetical protein 2826343 4195769 RD1_2947 Roseobacter denitrificans OCh 114 hypothetical protein YP_683154.1 2825858 D 375451 CDS YP_683155.1 110680148 4195559 2826345..2827856 1 NC_008209.1 hypothetical protein 2827856 4195559 RD1_2948 Roseobacter denitrificans OCh 114 hypothetical protein YP_683155.1 2826345 D 375451 CDS YP_683156.1 110680149 4195560 complement(2827981..2828100) 1 NC_008209.1 hypothetical protein 2828100 4195560 RD1_2949 Roseobacter denitrificans OCh 114 hypothetical protein YP_683156.1 2827981 R 375451 CDS YP_683157.1 110680150 4195561 complement(2828247..2830658) 1 NC_008209.1 ATP-dependent protease La 2830658 lon 4195561 lon Roseobacter denitrificans OCh 114 ATP-dependent protease La YP_683157.1 2828247 R 375451 CDS YP_683158.1 110680151 4195562 complement(2830857..2831540) 1 NC_008209.1 chemoreceptor protein 2831540 4195562 RD1_2951 Roseobacter denitrificans OCh 114 chemoreceptor protein YP_683158.1 2830857 R 375451 CDS YP_683159.1 110680152 4195563 complement(2831666..2832850) 1 NC_008209.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2832850 tgt 4195563 tgt Roseobacter denitrificans OCh 114 queuine tRNA-ribosyltransferase YP_683159.1 2831666 R 375451 CDS YP_683160.1 110680153 4195564 2832887..2834395 1 NC_008209.1 hypothetical protein 2834395 4195564 RD1_2953 Roseobacter denitrificans OCh 114 hypothetical protein YP_683160.1 2832887 D 375451 CDS YP_683161.1 110680154 4195565 2834486..2835382 1 NC_008209.1 hypothetical protein 2835382 4195565 RD1_2954 Roseobacter denitrificans OCh 114 hypothetical protein YP_683161.1 2834486 D 375451 CDS YP_683162.1 110680155 4195566 2835397..2835654 1 NC_008209.1 hypothetical protein 2835654 4195566 RD1_2955 Roseobacter denitrificans OCh 114 hypothetical protein YP_683162.1 2835397 D 375451 CDS YP_683163.1 110680156 4195567 2835732..2837111 1 NC_008209.1 ribosomal protein S6 modification protein 2837111 rimK 4195567 rimK Roseobacter denitrificans OCh 114 ribosomal protein S6 modification protein YP_683163.1 2835732 D 375451 CDS YP_683164.1 110680157 4195568 2837198..2837560 1 NC_008209.1 hypothetical protein 2837560 4195568 RD1_2957 Roseobacter denitrificans OCh 114 hypothetical protein YP_683164.1 2837198 D 375451 CDS YP_683165.1 110680158 4195569 2837572..2838138 1 NC_008209.1 maltose O-acetyltransferase 2838138 maa 4195569 maa Roseobacter denitrificans OCh 114 maltose O-acetyltransferase YP_683165.1 2837572 D 375451 CDS YP_683166.1 110680159 4195570 2838162..2838506 1 NC_008209.1 HesB-like iron-sulfur cluster assembly protein 2838506 hesB 4195570 hesB Roseobacter denitrificans OCh 114 HesB-like iron-sulfur cluster assembly protein YP_683166.1 2838162 D 375451 CDS YP_683167.1 110680160 4195571 2838631..2839377 1 NC_008209.1 triosephosphate isomerase 2839377 tpiA 4195571 tpiA Roseobacter denitrificans OCh 114 triosephosphate isomerase YP_683167.1 2838631 D 375451 CDS YP_683168.1 110680161 4195572 2839430..2840647 1 NC_008209.1 cytochrome P450 2840647 cyp 4195572 cyp Roseobacter denitrificans OCh 114 cytochrome P450 YP_683168.1 2839430 D 375451 CDS YP_683169.1 110680162 4195573 complement(2840823..2841293) 1 NC_008209.1 glutamate uptake regulatory protein 2841293 grp 4195573 grp Roseobacter denitrificans OCh 114 glutamate uptake regulatory protein YP_683169.1 2840823 R 375451 CDS YP_683170.1 110680163 4195574 2841430..2842857 1 NC_008209.1 siroheme synthase 2842857 cysG 4195574 cysG Roseobacter denitrificans OCh 114 siroheme synthase YP_683170.1 2841430 D 375451 CDS YP_683171.1 110680164 4195575 2842857..2843162 1 NC_008209.1 hypothetical protein 2843162 4195575 RD1_2965 Roseobacter denitrificans OCh 114 hypothetical protein YP_683171.1 2842857 D 375451 CDS YP_683172.1 110680165 4195576 2843155..2844819 1 NC_008209.1 sulfite reductase 2844819 cysI 4195576 cysI Roseobacter denitrificans OCh 114 sulfite reductase YP_683172.1 2843155 D 375451 CDS YP_683173.1 110680166 4195577 2844809..2845570 1 NC_008209.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2845570 cysH 4195577 cysH Roseobacter denitrificans OCh 114 phosphoadenosine phosphosulfate reductase YP_683173.1 2844809 D 375451 CDS YP_683174.1 110680167 4195578 2845567..2845980 1 NC_008209.1 hypothetical protein 2845980 4195578 RD1_2968 Roseobacter denitrificans OCh 114 hypothetical protein YP_683174.1 2845567 D 375451 CDS YP_683175.1 110680168 4195598 2846062..2846910 1 NC_008209.1 ferredoxin--NADP reductase 2846910 fpr 4195598 fpr Roseobacter denitrificans OCh 114 ferredoxin--NADP reductase YP_683175.1 2846062 D 375451 CDS YP_683176.1 110680169 4195599 2847148..2847642 1 NC_008209.1 translation initiation factor IF-3 2847642 infC 4195599 infC Roseobacter denitrificans OCh 114 translation initiation factor IF-3 YP_683176.1 2847148 D 375451 CDS YP_683177.1 110680170 4195600 2847756..2848778 1 NC_008209.1 hypothetical protein 2848778 4195600 RD1_2971 Roseobacter denitrificans OCh 114 hypothetical protein YP_683177.1 2847756 D 375451 CDS YP_683178.1 110680171 4195601 complement(2848829..2849620) 1 NC_008209.1 carbon monoxide dehydrogenase, medium subunit 2849620 coxM 4195601 coxM Roseobacter denitrificans OCh 114 carbon monoxide dehydrogenase, medium subunit YP_683178.1 2848829 R 375451 CDS YP_683179.1 110680172 4195602 complement(2849721..2852093) 1 NC_008209.1 carbon monoxide dehydrogenase, large subunit 2852093 coxL 4195602 coxL Roseobacter denitrificans OCh 114 carbon monoxide dehydrogenase, large subunit YP_683179.1 2849721 R 375451 CDS YP_683180.1 110680173 4195603 complement(2852198..2852683) 1 NC_008209.1 carbon monoxide dehydrogenase, small subunit 2852683 coxS 4195603 coxS Roseobacter denitrificans OCh 114 carbon monoxide dehydrogenase, small subunit YP_683180.1 2852198 R 375451 CDS YP_683181.1 110680174 4195604 complement(2852791..2853804) 1 NC_008209.1 molybdopterin biosynthesis protein 2853804 4195604 RD1_2975 Roseobacter denitrificans OCh 114 molybdopterin biosynthesis protein YP_683181.1 2852791 R 375451 CDS YP_683182.1 110680175 4195605 complement(2853801..2854769) 1 NC_008209.1 xanthine dehydrogenase accessory factor 2854769 4195605 RD1_2976 Roseobacter denitrificans OCh 114 xanthine dehydrogenase accessory factor YP_683182.1 2853801 R 375451 CDS YP_683183.1 110680176 4195606 2854909..2855145 1 NC_008209.1 BolA family protein 2855145 4195606 RD1_2977 Roseobacter denitrificans OCh 114 BolA family protein YP_683183.1 2854909 D 375451 CDS YP_683184.1 110680177 4195607 2855149..2855466 1 NC_008209.1 hypothetical protein 2855466 4195607 RD1_2978 Roseobacter denitrificans OCh 114 hypothetical protein YP_683184.1 2855149 D 375451 CDS YP_683185.1 110680178 4195608 2855463..2855825 1 NC_008209.1 glutaredoxin-like protein 2855825 4195608 RD1_2979 Roseobacter denitrificans OCh 114 glutaredoxin-like protein YP_683185.1 2855463 D 375451 CDS YP_683186.1 110680179 4195609 complement(2855880..2856272) 1 NC_008209.1 hypothetical protein 2856272 4195609 RD1_2980 Roseobacter denitrificans OCh 114 hypothetical protein YP_683186.1 2855880 R 375451 CDS YP_683187.1 110680180 4195610 complement(2856272..2856802) 1 NC_008209.1 hypothetical protein 2856802 4195610 RD1_2981 Roseobacter denitrificans OCh 114 hypothetical protein YP_683187.1 2856272 R 375451 CDS YP_683188.1 110680181 4195611 2857039..2859084 1 NC_008209.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2859084 tktA 4195611 tktA Roseobacter denitrificans OCh 114 transketolase YP_683188.1 2857039 D 375451 CDS YP_683189.1 110680182 4195612 complement(2859331..2860356) 1 NC_008209.1 hypothetical protein 2860356 4195612 RD1_2983 Roseobacter denitrificans OCh 114 hypothetical protein YP_683189.1 2859331 R 375451 CDS YP_683190.1 110680183 4195613 2860544..2861542 1 NC_008209.1 glyceraldehyde-3-phosphate dehydrogenase 2861542 gap 4195613 gap Roseobacter denitrificans OCh 114 glyceraldehyde-3-phosphate dehydrogenase YP_683190.1 2860544 D 375451 CDS YP_683191.1 110680184 4195614 complement(2861718..2862218) 1 NC_008209.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2862218 coaD 4195614 coaD Roseobacter denitrificans OCh 114 phosphopantetheine adenylyltransferase YP_683191.1 2861718 R 375451 CDS YP_683192.1 110680185 4195615 complement(2862305..2862739) 1 NC_008209.1 hypothetical protein 2862739 4195615 RD1_2986 Roseobacter denitrificans OCh 114 hypothetical protein YP_683192.1 2862305 R 375451 CDS YP_683193.1 110680186 4195616 complement(2862800..2863696) 1 NC_008209.1 LysR family transcriptional regulator 2863696 4195616 RD1_2988 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_683193.1 2862800 R 375451 CDS YP_683194.1 110680187 4195208 complement(2863641..2863814) 1 NC_008209.1 hypothetical protein 2863814 4195208 RD1_2989 Roseobacter denitrificans OCh 114 hypothetical protein YP_683194.1 2863641 R 375451 CDS YP_683195.1 110680188 4195209 2863828..2865327 1 NC_008209.1 methylmalonate-semialdehyde dehydrogenase 2865327 mmsA 4195209 mmsA Roseobacter denitrificans OCh 114 methylmalonate-semialdehyde dehydrogenase YP_683195.1 2863828 D 375451 CDS YP_683196.1 110680189 4195210 2865473..2867398 1 NC_008209.1 3-hydroxyisobutyrate dehydrogenase 2867398 mmsB 4195210 mmsB Roseobacter denitrificans OCh 114 3-hydroxyisobutyrate dehydrogenase YP_683196.1 2865473 D 375451 CDS YP_683197.1 110680190 4195211 2867570..2867713 1 NC_008209.1 hypothetical protein 2867713 4195211 RD1_2992 Roseobacter denitrificans OCh 114 hypothetical protein YP_683197.1 2867570 D 375451 CDS YP_683198.1 110680191 4195212 complement(2867915..2870773) 1 NC_008209.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 2870773 uvrA 4195212 uvrA Roseobacter denitrificans OCh 114 excinuclease ABC subunit A YP_683198.1 2867915 R 375451 CDS YP_683199.1 110680192 4195213 2871135..2871797 1 NC_008209.1 hypothetical protein 2871797 4195213 RD1_2994 Roseobacter denitrificans OCh 114 hypothetical protein YP_683199.1 2871135 D 375451 CDS YP_683200.1 110680193 4195214 complement(2871981..2873375) 1 NC_008209.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2873375 lpdA 4195214 lpdA Roseobacter denitrificans OCh 114 dihydrolipoamide dehydrogenase YP_683200.1 2871981 R 375451 CDS YP_683201.1 110680194 4195215 complement(2873495..2874079) 1 NC_008209.1 hypothetical protein 2874079 4195215 RD1_2996 Roseobacter denitrificans OCh 114 hypothetical protein YP_683201.1 2873495 R 375451 CDS YP_683202.1 110680195 4195216 complement(2874172..2875437) 1 NC_008209.1 major facilitator superfamily protein 2875437 4195216 RD1_2997 Roseobacter denitrificans OCh 114 major facilitator superfamily protein YP_683202.1 2874172 R 375451 CDS YP_683203.1 110680196 4195217 complement(2875541..2876596) 1 NC_008209.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2876596 queA 4195217 queA Roseobacter denitrificans OCh 114 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_683203.1 2875541 R 375451 CDS YP_683204.1 110680197 4195218 complement(2876607..2879966) 1 NC_008209.1 hypothetical protein 2879966 4195218 RD1_2999 Roseobacter denitrificans OCh 114 hypothetical protein YP_683204.1 2876607 R 375451 CDS YP_683205.1 110680198 4195219 2880093..2880554 1 NC_008209.1 bacterioferritin comigratory protein 2880554 bcp 4195219 bcp Roseobacter denitrificans OCh 114 bacterioferritin comigratory protein YP_683205.1 2880093 D 375451 CDS YP_683206.1 110680199 4195220 2880551..2881360 1 NC_008209.1 hypothetical protein 2881360 4195220 RD1_3001 Roseobacter denitrificans OCh 114 hypothetical protein YP_683206.1 2880551 D 375451 CDS YP_683207.1 110680200 4195221 2881528..2882862 1 NC_008209.1 M24/M37 family peptidase 2882862 4195221 RD1_3002 Roseobacter denitrificans OCh 114 M24/M37 family peptidase YP_683207.1 2881528 D 375451 CDS YP_683208.1 110680201 4195222 2882852..2883346 1 NC_008209.1 hypothetical protein 2883346 4195222 RD1_3003 Roseobacter denitrificans OCh 114 hypothetical protein YP_683208.1 2882852 D 375451 CDS YP_683209.1 110680202 4195223 complement(2883280..2883423) 1 NC_008209.1 hypothetical protein 2883423 4195223 RD1_3004 Roseobacter denitrificans OCh 114 hypothetical protein YP_683209.1 2883280 R 375451 CDS YP_683210.1 110680203 4195224 complement(2883787..2884326) 1 NC_008209.1 cyclophilin type peptidyl-prolyl cis-trans isomerase 2884326 ppiB 4195224 ppiB Roseobacter denitrificans OCh 114 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_683210.1 2883787 R 375451 CDS YP_683211.1 110680204 4195225 complement(2884340..2884846) 1 NC_008209.1 cyclophilin type peptidyl-prolyl cis-trans isomerase 2884846 4195225 RD1_3007 Roseobacter denitrificans OCh 114 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_683211.1 2884340 R 375451 CDS YP_683212.1 110680205 4195226 2884976..2886163 1 NC_008209.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2886163 pgk 4195226 pgk Roseobacter denitrificans OCh 114 phosphoglycerate kinase YP_683212.1 2884976 D 375451 CDS YP_683213.1 110680206 4195227 2886391..2886690 1 NC_008209.1 hypothetical protein 2886690 4195227 RD1_3010 Roseobacter denitrificans OCh 114 hypothetical protein YP_683213.1 2886391 D 375451 CDS YP_683214.1 110680207 4195732 2886826..2887836 1 NC_008209.1 pyruvate dehydrogenase complex, E1 component subunit alpha 2887836 pdhA 4195732 pdhA Roseobacter denitrificans OCh 114 pyruvate dehydrogenase complex, E1 component subunit alpha YP_683214.1 2886826 D 375451 CDS YP_683215.1 110680208 4195733 2887840..2889219 1 NC_008209.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 2889219 pdhB 4195733 pdhB Roseobacter denitrificans OCh 114 pyruvate dehydrogenase subunit beta YP_683215.1 2887840 D 375451 CDS YP_683216.1 110680209 4195734 2889231..2890526 1 NC_008209.1 branched-chain alpha-keto acid dehydrogenase subunit E2 2890526 pdhC 4195734 pdhC Roseobacter denitrificans OCh 114 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_683216.1 2889231 D 375451 CDS YP_683217.1 110680210 4195735 complement(2890661..2891482) 1 NC_008209.1 serine acetyltransferase 2891482 cysE 4195735 cysE Roseobacter denitrificans OCh 114 serine acetyltransferase YP_683217.1 2890661 R 375451 CDS YP_683218.1 110680211 4195736 complement(2891585..2895529) 1 NC_008209.1 hypothetical protein 2895529 4195736 RD1_3016 Roseobacter denitrificans OCh 114 hypothetical protein YP_683218.1 2891585 R 375451 CDS YP_683219.1 110680212 4195737 complement(2895529..2895975) 1 NC_008209.1 hypothetical protein 2895975 4195737 RD1_3017 Roseobacter denitrificans OCh 114 hypothetical protein YP_683219.1 2895529 R 375451 CDS YP_683220.1 110680213 4195738 complement(2895972..2896859) 1 NC_008209.1 hypothetical protein 2896859 4195738 RD1_3018 Roseobacter denitrificans OCh 114 hypothetical protein YP_683220.1 2895972 R 375451 CDS YP_683221.1 110680214 4195739 complement(2896859..2897491) 1 NC_008209.1 hypothetical protein 2897491 4195739 RD1_3019 Roseobacter denitrificans OCh 114 hypothetical protein YP_683221.1 2896859 R 375451 CDS YP_683222.1 110680215 4195740 complement(2897509..2898171) 1 NC_008209.1 hypothetical protein 2898171 4195740 RD1_3020 Roseobacter denitrificans OCh 114 hypothetical protein YP_683222.1 2897509 R 375451 CDS YP_683223.1 110680216 4195741 complement(2898184..2898369) 1 NC_008209.1 hypothetical protein 2898369 4195741 RD1_3022 Roseobacter denitrificans OCh 114 hypothetical protein YP_683223.1 2898184 R 375451 CDS YP_683224.1 110680217 4195742 complement(2898366..2898626) 1 NC_008209.1 hypothetical protein 2898626 4195742 RD1_3023 Roseobacter denitrificans OCh 114 hypothetical protein YP_683224.1 2898366 R 375451 CDS YP_683225.1 110680218 4195743 complement(2898685..2899098) 1 NC_008209.1 hypothetical protein 2899098 4195743 RD1_3024 Roseobacter denitrificans OCh 114 hypothetical protein YP_683225.1 2898685 R 375451 CDS YP_683226.1 110680219 4195744 complement(2899127..2899537) 1 NC_008209.1 hypothetical protein 2899537 4195744 RD1_3025 Roseobacter denitrificans OCh 114 hypothetical protein YP_683226.1 2899127 R 375451 CDS YP_683227.1 110680220 4195745 complement(2899534..2899872) 1 NC_008209.1 phage head-tail adaptor 2899872 4195745 RD1_3026 Roseobacter denitrificans OCh 114 phage head-tail adaptor YP_683227.1 2899534 R 375451 CDS YP_683228.1 110680221 4195746 complement(2899869..2900462) 1 NC_008209.1 hypothetical protein 2900462 4195746 RD1_3027 Roseobacter denitrificans OCh 114 hypothetical protein YP_683228.1 2899869 R 375451 CDS YP_683229.1 110680222 4195747 complement(2900621..2901799) 1 NC_008209.1 phage major capsid protein 2901799 4195747 RD1_3028 Roseobacter denitrificans OCh 114 phage major capsid protein YP_683229.1 2900621 R 375451 CDS YP_683230.1 110680223 4195748 complement(2901867..2902424) 1 NC_008209.1 phage prohead protease 2902424 4195748 RD1_3030 Roseobacter denitrificans OCh 114 phage prohead protease YP_683230.1 2901867 R 375451 CDS YP_683231.1 110680224 4195749 complement(2902458..2902703) 1 NC_008209.1 hypothetical protein 2902703 4195749 RD1_3031 Roseobacter denitrificans OCh 114 hypothetical protein YP_683231.1 2902458 R 375451 CDS YP_683232.1 110680225 4195750 complement(2902672..2903850) 1 NC_008209.1 phage portal protein 2903850 4195750 RD1_3033 Roseobacter denitrificans OCh 114 phage portal protein YP_683232.1 2902672 R 375451 CDS YP_683233.1 110680226 4198737 complement(2903999..2905369) 1 NC_008209.1 hypothetical protein 2905369 4198737 RD1_3034 Roseobacter denitrificans OCh 114 hypothetical protein YP_683233.1 2903999 R 375451 CDS YP_683234.1 110680227 4198738 complement(2905890..2907056) 1 NC_008209.1 hypothetical protein 2907056 4198738 RD1_3035 Roseobacter denitrificans OCh 114 hypothetical protein YP_683234.1 2905890 R 375451 CDS YP_683235.1 110680228 4198739 complement(2907056..2908315) 1 NC_008209.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2908315 fabF 4198739 fabF Roseobacter denitrificans OCh 114 3-oxoacyl-ACP synthase YP_683235.1 2907056 R 375451 CDS YP_683236.1 110680229 4198740 complement(2908406..2908939) 1 NC_008209.1 acetyltransferase 2908939 4198740 RD1_3037 Roseobacter denitrificans OCh 114 acetyltransferase YP_683236.1 2908406 R 375451 CDS YP_683237.1 110680230 4198741 complement(2909112..2909345) 1 NC_008209.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2909345 acpP 4198741 acpP Roseobacter denitrificans OCh 114 acyl carrier protein YP_683237.1 2909112 R 375451 CDS YP_683238.1 110680231 4198742 complement(2909595..2910332) 1 NC_008209.1 short chain dehydrogenase/reductase family oxidoreductase 2910332 4198742 RD1_3039 Roseobacter denitrificans OCh 114 short chain dehydrogenase/reductase family oxidoreductase YP_683238.1 2909595 R 375451 CDS YP_683239.1 110680232 4198743 complement(2910347..2911279) 1 NC_008209.1 malonyl CoA-ACP transacylase 2911279 fabD 4198743 fabD Roseobacter denitrificans OCh 114 malonyl CoA-ACP transacylase YP_683239.1 2910347 R 375451 CDS YP_683240.1 110680233 4198744 2911470..2912669 1 NC_008209.1 cytochrome b561 2912669 4198744 RD1_3041 Roseobacter denitrificans OCh 114 cytochrome b561 YP_683240.1 2911470 D 375451 CDS YP_683241.1 110680234 4198745 complement(2912729..2913307) 1 NC_008209.1 hypothetical protein 2913307 4198745 RD1_3042 Roseobacter denitrificans OCh 114 hypothetical protein YP_683241.1 2912729 R 375451 CDS YP_683242.1 110680235 4198746 2913641..2913994 1 NC_008209.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2913994 rpsF 4198746 rpsF Roseobacter denitrificans OCh 114 30S ribosomal protein S6 YP_683242.1 2913641 D 375451 CDS YP_683243.1 110680236 4198747 2914021..2914248 1 NC_008209.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2914248 rpsR 4198747 rpsR Roseobacter denitrificans OCh 114 30S ribosomal protein S18 YP_683243.1 2914021 D 375451 CDS YP_683244.1 110680237 4198748 2914259..2914894 1 NC_008209.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2914894 rplI 4198748 rplI Roseobacter denitrificans OCh 114 50S ribosomal protein L9 YP_683244.1 2914259 D 375451 CDS YP_683245.1 110680238 4198749 complement(2915060..2915233) 1 NC_008209.1 hypothetical protein 2915233 4198749 RD1_3046 Roseobacter denitrificans OCh 114 hypothetical protein YP_683245.1 2915060 R 375451 CDS YP_683246.1 110680239 4198750 2915228..2915869 1 NC_008209.1 alternative oxidase 2915869 aox 4198750 aox Roseobacter denitrificans OCh 114 alternative oxidase YP_683246.1 2915228 D 375451 CDS YP_683247.1 110680240 4198751 complement(2915924..2916613) 1 NC_008209.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 2916613 apqZ 4198751 apqZ Roseobacter denitrificans OCh 114 aquaporin Z YP_683247.1 2915924 R 375451 CDS YP_683248.1 110680241 4198752 complement(2916749..2918080) 1 NC_008209.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2918080 tig 4198752 tig Roseobacter denitrificans OCh 114 trigger factor YP_683248.1 2916749 R 375451 CDS YP_683249.1 110680242 4198753 complement(2918316..2921336) 1 NC_008209.1 ABC transporter permease 2921336 4198753 RD1_3050 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683249.1 2918316 R 375451 CDS YP_683250.1 110680243 4198754 complement(2921995..2922567) 1 NC_008209.1 hypothetical protein 2922567 4198754 RD1_3051 Roseobacter denitrificans OCh 114 hypothetical protein YP_683250.1 2921995 R 375451 CDS YP_683251.1 110680244 4198755 complement(2922661..2923383) 1 NC_008209.1 ribosomal RNA large subunit methyltransferase 2923383 rrmJ 4198755 rrmJ Roseobacter denitrificans OCh 114 ribosomal RNA large subunit methyltransferase YP_683251.1 2922661 R 375451 CDS YP_683252.1 110680245 4198756 complement(2923383..2924498) 1 NC_008209.1 Ppx/GppA phosphatase 2924498 4198756 RD1_3053 Roseobacter denitrificans OCh 114 Ppx/GppA phosphatase YP_683252.1 2923383 R 375451 CDS YP_683253.1 110680246 4198719 2924772..2925068 1 NC_008209.1 hypothetical protein 2925068 4198719 RD1_3054 Roseobacter denitrificans OCh 114 hypothetical protein YP_683253.1 2924772 D 375451 CDS YP_683254.1 110680247 4198720 2925059..2926042 1 NC_008209.1 5,10-methylenetetrahydrofolate reductase 2926042 metF 4198720 metF Roseobacter denitrificans OCh 114 5,10-methylenetetrahydrofolate reductase YP_683254.1 2925059 D 375451 CDS YP_683255.1 110680248 4198721 2926061..2927143 1 NC_008209.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 2927143 metH 4198721 metH Roseobacter denitrificans OCh 114 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase YP_683255.1 2926061 D 375451 CDS YP_683256.1 110680249 4198722 2927654..2928019 1 NC_008209.1 chemotaxis protein CheY 2928019 cheY 4198722 cheY Roseobacter denitrificans OCh 114 chemotaxis protein CheY YP_683256.1 2927654 D 375451 CDS YP_683257.1 110680250 4198723 2928050..2930272 1 NC_008209.1 chemotaxis protein CheA 2930272 cheA 4198723 cheA Roseobacter denitrificans OCh 114 chemotaxis protein CheA YP_683257.1 2928050 D 375451 CDS YP_683258.1 110680251 4198724 2930269..2930727 1 NC_008209.1 chemotaxis protein CheW 2930727 cheW 4198724 cheW Roseobacter denitrificans OCh 114 chemotaxis protein CheW YP_683258.1 2930269 D 375451 CDS YP_683259.1 110680252 4198725 2930727..2931611 1 NC_008209.1 chemotaxis protein methyltransferase 2931611 cheR 4198725 cheR Roseobacter denitrificans OCh 114 chemotaxis protein methyltransferase YP_683259.1 2930727 D 375451 CDS YP_683260.1 110680253 4198726 2931602..2931988 1 NC_008209.1 chemotaxis response regulator CheY 2931988 cheY 4198726 cheY Roseobacter denitrificans OCh 114 chemotaxis response regulator CheY YP_683260.1 2931602 D 375451 CDS YP_683261.2 162139373 4198727 2932629..2933438 1 NC_008209.1 integrase catalytic subunit 2933438 4198727 RD1_3063 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_683261.2 2932629 D 375451 CDS YP_683262.1 110680255 4198728 complement(2933452..2933622) 1 NC_008209.1 integrase catalytic subunit 2933622 4198728 RD1_3064 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_683262.1 2933452 R 375451 CDS YP_683263.1 110680256 4198729 complement(2934019..2934192) 1 NC_008209.1 hypothetical protein 2934192 4198729 RD1_3065 Roseobacter denitrificans OCh 114 hypothetical protein YP_683263.1 2934019 R 375451 CDS YP_683264.1 110680257 4198730 complement(2934307..2942307) 1 NC_008209.1 iron-regulated protein frpC 2942307 frpC 4198730 frpC Roseobacter denitrificans OCh 114 iron-regulated protein frpC YP_683264.1 2934307 R 375451 CDS YP_683265.1 110680258 4198731 complement(2942628..2942756) 1 NC_008209.1 hypothetical protein 2942756 4198731 RD1_3067 Roseobacter denitrificans OCh 114 hypothetical protein YP_683265.1 2942628 R 375451 CDS YP_683266.1 110680259 4198733 2943198..2944772 1 NC_008209.1 phage integrase family site specific recombinase 2944772 4198733 RD1_3069 Roseobacter denitrificans OCh 114 phage integrase family site specific recombinase YP_683266.1 2943198 D 375451 CDS YP_683267.1 110680260 4198734 complement(2944769..2945035) 1 NC_008209.1 DNA-binding protein 2945035 4198734 RD1_3070 Roseobacter denitrificans OCh 114 DNA-binding protein YP_683267.1 2944769 R 375451 CDS YP_683268.1 110680261 4198735 2945130..2945597 1 NC_008209.1 hypothetical protein 2945597 4198735 RD1_3071 Roseobacter denitrificans OCh 114 hypothetical protein YP_683268.1 2945130 D 375451 CDS YP_683269.1 110680262 4198736 2945607..2945969 1 NC_008209.1 hypothetical protein 2945969 4198736 RD1_3072 Roseobacter denitrificans OCh 114 hypothetical protein YP_683269.1 2945607 D 375451 CDS YP_683270.1 110680263 4198699 complement(2946828..2946956) 1 NC_008209.1 hypothetical protein 2946956 4198699 RD1_3073 Roseobacter denitrificans OCh 114 hypothetical protein YP_683270.1 2946828 R 375451 CDS YP_683271.1 110680264 4198700 complement(2946937..2947032) 1 NC_008209.1 hypothetical protein 2947032 4198700 RD1_3074 Roseobacter denitrificans OCh 114 hypothetical protein YP_683271.1 2946937 R 375451 CDS YP_683272.1 110680265 4198701 complement(2947011..2948381) 1 NC_008209.1 carbohydrate kinases 2948381 4198701 RD1_3075 Roseobacter denitrificans OCh 114 carbohydrate kinases YP_683272.1 2947011 R 375451 CDS YP_683273.1 110680266 4198702 complement(2948378..2948695) 1 NC_008209.1 hypothetical protein 2948695 4198702 RD1_3076 Roseobacter denitrificans OCh 114 hypothetical protein YP_683273.1 2948378 R 375451 CDS YP_683274.1 110680267 4198703 complement(2948692..2949693) 1 NC_008209.1 sugar ABC transporter permease 2949693 4198703 RD1_3077 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683274.1 2948692 R 375451 CDS YP_683275.1 110680268 4198704 complement(2949690..2950652) 1 NC_008209.1 ribose ABC transporter permease 2950652 rbsC 4198704 rbsC Roseobacter denitrificans OCh 114 ribose ABC transporter permease YP_683275.1 2949690 R 375451 CDS YP_683276.1 110680269 4198705 complement(2950667..2952202) 1 NC_008209.1 ribose transport ATP-binding protein 2952202 rbsA 4198705 rbsA Roseobacter denitrificans OCh 114 ribose transport ATP-binding protein YP_683276.1 2950667 R 375451 CDS YP_683277.1 110680270 4198706 complement(2952252..2953244) 1 NC_008209.1 sugar ABC transporter ATP binding protein 2953244 4198706 RD1_3080 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP binding protein YP_683277.1 2952252 R 375451 CDS YP_683278.1 110680271 4198707 complement(2953269..2954081) 1 NC_008209.1 DeoR family transcriptional regulator 2954081 4198707 RD1_3082 Roseobacter denitrificans OCh 114 DeoR family transcriptional regulator YP_683278.1 2953269 R 375451 CDS YP_683279.1 110680272 4198708 2954268..2956370 1 NC_008209.1 short chain dehydrogenase 2956370 4198708 RD1_3083 Roseobacter denitrificans OCh 114 short chain dehydrogenase YP_683279.1 2954268 D 375451 CDS YP_683280.1 110680273 4198709 2956384..2957658 1 NC_008209.1 hypothetical protein 2957658 4198709 RD1_3084 Roseobacter denitrificans OCh 114 hypothetical protein YP_683280.1 2956384 D 375451 CDS YP_683281.1 110680274 4198710 2957784..2960129 1 NC_008209.1 sensor protein FixL 2960129 fixL 4198710 fixL Roseobacter denitrificans OCh 114 sensor protein FixL YP_683281.1 2957784 D 375451 CDS YP_683282.1 110680275 4198711 2960113..2960754 1 NC_008209.1 transcriptional regulatory protein FixJ 2960754 fixJ 4198711 fixJ Roseobacter denitrificans OCh 114 transcriptional regulatory protein FixJ YP_683282.1 2960113 D 375451 CDS YP_683283.1 110680276 4198712 complement(2961152..2962264) 1 NC_008209.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2962264 aroB 4198712 aroB Roseobacter denitrificans OCh 114 3-dehydroquinate synthase YP_683283.1 2961152 R 375451 CDS YP_683284.1 110680277 4198713 complement(2962257..2962850) 1 NC_008209.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2962850 aroK 4198713 aroK Roseobacter denitrificans OCh 114 shikimate kinase YP_683284.1 2962257 R 375451 CDS YP_683285.1 110680278 4198714 2962927..2963076 1 NC_008209.1 hypothetical protein 2963076 4198714 RD1_3089 Roseobacter denitrificans OCh 114 hypothetical protein YP_683285.1 2962927 D 375451 CDS YP_683286.1 110680279 4198715 2963066..2964604 1 NC_008209.1 hypothetical protein 2964604 4198715 RD1_3090 Roseobacter denitrificans OCh 114 hypothetical protein YP_683286.1 2963066 D 375451 CDS YP_683287.1 110680280 4198716 2964604..2965575 1 NC_008209.1 tyrosine recombinase XerD 2965575 xerD 4198716 xerD Roseobacter denitrificans OCh 114 tyrosine recombinase XerD YP_683287.1 2964604 D 375451 CDS YP_683288.1 110680281 4198717 2965734..2967041 1 NC_008209.1 hypothetical protein 2967041 4198717 RD1_3092 Roseobacter denitrificans OCh 114 hypothetical protein YP_683288.1 2965734 D 375451 CDS YP_683289.1 110680282 4198718 complement(2967089..2969512) 1 NC_008209.1 dimethylglycine dehydrogenase 2969512 4198718 RD1_3093 Roseobacter denitrificans OCh 114 dimethylglycine dehydrogenase YP_683289.1 2967089 R 375451 CDS YP_683290.1 110680283 4198680 complement(2969618..2970883) 1 NC_008209.1 hypothetical protein 2970883 4198680 RD1_3094 Roseobacter denitrificans OCh 114 hypothetical protein YP_683290.1 2969618 R 375451 CDS YP_683291.1 110680284 4198681 complement(2970956..2972467) 1 NC_008209.1 hypothetical protein 2972467 4198681 RD1_3095 Roseobacter denitrificans OCh 114 hypothetical protein YP_683291.1 2970956 R 375451 CDS YP_683292.1 110680285 4198682 complement(2972800..2973789) 1 NC_008209.1 ABC transporter substrate-binding protein 2973789 4198682 RD1_3096 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_683292.1 2972800 R 375451 CDS YP_683293.1 110680286 4198683 complement(2973836..2974675) 1 NC_008209.1 ABC transporter permease 2974675 4198683 RD1_3097 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683293.1 2973836 R 375451 CDS YP_683294.1 110680287 4198684 complement(2974675..2975583) 1 NC_008209.1 ABC transporter permease 2975583 4198684 RD1_3098 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683294.1 2974675 R 375451 CDS YP_683295.1 110680288 4198685 complement(2975597..2976379) 1 NC_008209.1 ABC transporter ATP-binding protein 2976379 4198685 RD1_3099 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_683295.1 2975597 R 375451 CDS YP_683296.1 110680289 4198686 complement(2976403..2977857) 1 NC_008209.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2977857 hydA 4198686 hydA Roseobacter denitrificans OCh 114 phenylhydantoinase YP_683296.1 2976403 R 375451 CDS YP_683297.1 110680290 4198687 complement(2977883..2979133) 1 NC_008209.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2979133 4198687 RD1_3101 Roseobacter denitrificans OCh 114 allantoate amidohydrolase YP_683297.1 2977883 R 375451 CDS YP_683298.1 110680291 4198688 2979322..2979930 1 NC_008209.1 TetR family transcriptional regulator 2979930 4198688 RD1_3102 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_683298.1 2979322 D 375451 CDS YP_683299.1 110680292 4198689 complement(2979988..2981292) 1 NC_008209.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2981292 4198689 RD1_3103 Roseobacter denitrificans OCh 114 dihydropyrimidine dehydrogenase YP_683299.1 2979988 R 375451 CDS YP_683300.1 110680293 4198690 complement(2981292..2982626) 1 NC_008209.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 2982626 gltD 4198690 gltD Roseobacter denitrificans OCh 114 glutamate synthase subunit beta YP_683300.1 2981292 R 375451 CDS YP_683301.1 110680294 4198691 complement(2982670..2982765) 1 NC_008209.1 hypothetical protein 2982765 4198691 RD1_3106 Roseobacter denitrificans OCh 114 hypothetical protein YP_683301.1 2982670 R 375451 CDS YP_683302.1 110680295 4198692 complement(2983032..2986286) 1 NC_008209.1 regulatory protein 2986286 4198692 RD1_3107 Roseobacter denitrificans OCh 114 regulatory protein YP_683302.1 2983032 R 375451 CDS YP_683303.1 110680296 4198693 2986532..2987203 1 NC_008209.1 hypothetical protein 2987203 4198693 RD1_3108 Roseobacter denitrificans OCh 114 hypothetical protein YP_683303.1 2986532 D 375451 CDS YP_683304.1 110680297 4198694 2987282..2988250 1 NC_008209.1 aldose 1-epimerase 2988250 galM 4198694 galM Roseobacter denitrificans OCh 114 aldose 1-epimerase YP_683304.1 2987282 D 375451 CDS YP_683305.1 110680298 4198695 2988482..2988832 1 NC_008209.1 hypothetical protein 2988832 4198695 RD1_3110 Roseobacter denitrificans OCh 114 hypothetical protein YP_683305.1 2988482 D 375451 CDS YP_683306.1 110680299 4198696 complement(2988860..2989282) 1 NC_008209.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2989282 ndk 4198696 ndk Roseobacter denitrificans OCh 114 nucleoside diphosphate kinase YP_683306.1 2988860 R 375451 CDS YP_683307.1 110680300 4198697 2989423..2991285 1 NC_008209.1 ABC transporter ATP-binding protein 2991285 yheS 4198697 yheS Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_683307.1 2989423 D 375451 CDS YP_683308.1 110680301 4198698 complement(2991282..2991923) 1 NC_008209.1 bacteriochlorophyll 4-vinyl reductase 2991923 bchJ 4198698 bchJ Roseobacter denitrificans OCh 114 bacteriochlorophyll 4-vinyl reductase YP_683308.1 2991282 R 375451 CDS YP_683309.1 110680302 4198660 2992158..2992790 1 NC_008209.1 MarC family integral membrane protein 2992790 4198660 RD1_3115 Roseobacter denitrificans OCh 114 MarC family integral membrane protein YP_683309.1 2992158 D 375451 CDS YP_683310.1 110680303 4198661 2992842..2993423 1 NC_008209.1 hypothetical protein 2993423 4198661 RD1_3116 Roseobacter denitrificans OCh 114 hypothetical protein YP_683310.1 2992842 D 375451 CDS YP_683311.1 110680304 4198662 complement(2993420..2993887) 1 NC_008209.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 2993887 4198662 RD1_3117 Roseobacter denitrificans OCh 114 DNA polymerase III subunit chi YP_683311.1 2993420 R 375451 CDS YP_683312.1 110680305 4198663 complement(2993893..2995398) 1 NC_008209.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 2995398 pepA 4198663 pepA Roseobacter denitrificans OCh 114 leucyl aminopeptidase YP_683312.1 2993893 R 375451 CDS YP_683313.1 110680306 4198664 2995504..2996631 1 NC_008209.1 hypothetical protein 2996631 4198664 RD1_3119 Roseobacter denitrificans OCh 114 hypothetical protein YP_683313.1 2995504 D 375451 CDS YP_683314.1 110680307 4198665 2996628..2997725 1 NC_008209.1 YjgP/YjgQ family permease 2997725 4198665 RD1_3120 Roseobacter denitrificans OCh 114 YjgP/YjgQ family permease YP_683314.1 2996628 D 375451 CDS YP_683315.1 110680308 4198666 2997722..2999845 1 NC_008209.1 organic solvent tolerance protein 2999845 ost 4198666 ost Roseobacter denitrificans OCh 114 organic solvent tolerance protein YP_683315.1 2997722 D 375451 CDS YP_683316.1 110680309 4198667 2999853..3001073 1 NC_008209.1 peptidyl-prolyl cis-trans isomerase SurA 3001073 surA 4198667 surA Roseobacter denitrificans OCh 114 peptidyl-prolyl cis-trans isomerase SurA YP_683316.1 2999853 D 375451 CDS YP_683317.1 110680310 4198668 3001070..3002050 1 NC_008209.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3002050 pdxA 4198668 pdxA Roseobacter denitrificans OCh 114 4-hydroxythreonine-4-phosphate dehydrogenase YP_683317.1 3001070 D 375451 CDS YP_683318.1 110680311 4198669 3002078..3002920 1 NC_008209.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3002920 ksgA 4198669 ksgA Roseobacter denitrificans OCh 114 dimethyladenosine transferase YP_683318.1 3002078 D 375451 CDS YP_683319.1 110680312 4198670 complement(3002949..3003512) 1 NC_008209.1 hypothetical protein 3003512 4198670 RD1_3125 Roseobacter denitrificans OCh 114 hypothetical protein YP_683319.1 3002949 R 375451 CDS YP_683320.1 110680313 4198671 complement(3003736..3004551) 1 NC_008209.1 HemK family modification methylase 3004551 hemK 4198671 hemK Roseobacter denitrificans OCh 114 HemK family modification methylase YP_683320.1 3003736 R 375451 CDS YP_683321.1 110680314 4198672 complement(3004566..3005621) 1 NC_008209.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3005621 prfA 4198672 prfA Roseobacter denitrificans OCh 114 peptide chain release factor 1 YP_683321.1 3004566 R 375451 CDS YP_683322.1 110680315 4198673 3005684..3005971 1 NC_008209.1 hypothetical protein 3005971 4198673 RD1_3128 Roseobacter denitrificans OCh 114 hypothetical protein YP_683322.1 3005684 D 375451 CDS YP_683323.1 110680316 4198674 complement(3005915..3006316) 1 NC_008209.1 hypothetical protein 3006316 4198674 RD1_3129 Roseobacter denitrificans OCh 114 hypothetical protein YP_683323.1 3005915 R 375451 CDS YP_683324.1 110680317 4198675 complement(3006356..3007306) 1 NC_008209.1 agmatinase 3007306 4198675 RD1_3130 Roseobacter denitrificans OCh 114 agmatinase YP_683324.1 3006356 R 375451 CDS YP_683325.1 110680318 4198676 complement(3007306..3008274) 1 NC_008209.1 catalyzes the formation of putrescine from agmatine; agmatinase 3008274 4198676 RD1_3131 Roseobacter denitrificans OCh 114 agmatinase YP_683325.1 3007306 R 375451 CDS YP_683326.1 110680319 4198677 complement(3008278..3009447) 1 NC_008209.1 amidohydrolase 3009447 4198677 RD1_3132 Roseobacter denitrificans OCh 114 amidohydrolase YP_683326.1 3008278 R 375451 CDS YP_683327.1 110680320 4198678 3009511..3010326 1 NC_008209.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 3010326 mazG 4198678 mazG Roseobacter denitrificans OCh 114 nucleoside triphosphate pyrophosphohydrolase YP_683327.1 3009511 D 375451 CDS YP_683328.1 110680321 4198679 3010505..3011446 1 NC_008209.1 inosine-uridine preferring nucleoside hydrolase 3011446 4198679 RD1_3134 Roseobacter denitrificans OCh 114 inosine-uridine preferring nucleoside hydrolase YP_683328.1 3010505 D 375451 CDS YP_683329.1 110680322 4198641 3011443..3011892 1 NC_008209.1 acetyltransferase 3011892 4198641 RD1_3135 Roseobacter denitrificans OCh 114 acetyltransferase YP_683329.1 3011443 D 375451 CDS YP_683330.1 110680323 4198642 3011937..3013349 1 NC_008209.1 hypothetical protein 3013349 4198642 RD1_3136 Roseobacter denitrificans OCh 114 hypothetical protein YP_683330.1 3011937 D 375451 CDS YP_683331.1 110680324 4198643 complement(3013346..3014233) 1 NC_008209.1 hypothetical protein 3014233 4198643 RD1_3137 Roseobacter denitrificans OCh 114 hypothetical protein YP_683331.1 3013346 R 375451 CDS YP_683332.1 110680325 4198644 complement(3014297..3015598) 1 NC_008209.1 ATP-dependent RNA helicase 3015598 rhlE2 4198644 rhlE2 Roseobacter denitrificans OCh 114 ATP-dependent RNA helicase YP_683332.1 3014297 R 375451 CDS YP_683333.1 110680326 4198645 3015841..3015939 1 NC_008209.1 hypothetical protein 3015939 4198645 RD1_3139 Roseobacter denitrificans OCh 114 hypothetical protein YP_683333.1 3015841 D 375451 CDS YP_683334.1 110680327 4198646 3015936..3016349 1 NC_008209.1 ferric uptake regulation protein 3016349 fur 4198646 fur Roseobacter denitrificans OCh 114 ferric uptake regulation protein YP_683334.1 3015936 D 375451 CDS YP_683335.1 110680328 4198647 3016425..3017297 1 NC_008209.1 hypothetical protein 3017297 4198647 RD1_3141 Roseobacter denitrificans OCh 114 hypothetical protein YP_683335.1 3016425 D 375451 CDS YP_683336.1 110680329 4198648 3017362..3018636 1 NC_008209.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3018636 eno 4198648 eno Roseobacter denitrificans OCh 114 phosphopyruvate hydratase YP_683336.1 3017362 D 375451 CDS YP_683337.1 110680330 4198649 3018633..3019148 1 NC_008209.1 acetyltransferase 3019148 4198649 RD1_3143 Roseobacter denitrificans OCh 114 acetyltransferase YP_683337.1 3018633 D 375451 CDS YP_683338.1 110680331 4198650 complement(3019138..3020214) 1 NC_008209.1 fructosyl-amino acid oxidase 3020214 4198650 RD1_3144 Roseobacter denitrificans OCh 114 fructosyl-amino acid oxidase YP_683338.1 3019138 R 375451 CDS YP_683339.1 110680332 4198651 complement(3020322..3021455) 1 NC_008209.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3021455 anmK 4198651 anmK Roseobacter denitrificans OCh 114 anhydro-N-acetylmuramic acid kinase YP_683339.1 3020322 R 375451 CDS YP_683340.1 110680333 4198652 3021520..3022770 1 NC_008209.1 tyrosyl-tRNA synthetase 3022770 tyrS 4198652 tyrS Roseobacter denitrificans OCh 114 tyrosyl-tRNA synthetase YP_683340.1 3021520 D 375451 CDS YP_683341.1 110680334 4198653 3022790..3023545 1 NC_008209.1 3-hydroxyacyl-CoA dehydrogenase 3023545 hadH 4198653 hadH Roseobacter denitrificans OCh 114 3-hydroxyacyl-CoA dehydrogenase YP_683341.1 3022790 D 375451 CDS YP_683342.1 110680335 4198654 3023545..3024144 1 NC_008209.1 hypothetical protein 3024144 4198654 RD1_3148 Roseobacter denitrificans OCh 114 hypothetical protein YP_683342.1 3023545 D 375451 CDS YP_683343.1 110680336 4198655 complement(3024141..3025949) 1 NC_008209.1 ABC transporter ATP-binding protein 3025949 4198655 RD1_3149 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_683343.1 3024141 R 375451 CDS YP_683344.1 110680337 4198656 complement(3026016..3026741) 1 NC_008209.1 hypothetical protein 3026741 4198656 RD1_3150 Roseobacter denitrificans OCh 114 hypothetical protein YP_683344.1 3026016 R 375451 CDS YP_683345.1 110680338 4198657 complement(3026764..3027240) 1 NC_008209.1 lipoprotein 3027240 4198657 RD1_3151 Roseobacter denitrificans OCh 114 lipoprotein YP_683345.1 3026764 R 375451 CDS YP_683346.1 110680339 4198658 complement(3027306..3027440) 1 NC_008209.1 hypothetical protein 3027440 4198658 RD1_3152 Roseobacter denitrificans OCh 114 hypothetical protein YP_683346.1 3027306 R 375451 CDS YP_683347.1 110680340 4198659 3027328..3027873 1 NC_008209.1 hypothetical protein 3027873 4198659 RD1_3153 Roseobacter denitrificans OCh 114 hypothetical protein YP_683347.1 3027328 D 375451 CDS YP_683348.1 110680341 4198622 3028104..3028310 1 NC_008209.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3028310 rpmF 4198622 rpmF Roseobacter denitrificans OCh 114 50S ribosomal protein L32 YP_683348.1 3028104 D 375451 CDS YP_683349.1 110680342 4198623 3028360..3029433 1 NC_008209.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3029433 plsX 4198623 plsX Roseobacter denitrificans OCh 114 glycerol-3-phosphate acyltransferase PlsX YP_683349.1 3028360 D 375451 CDS YP_683350.1 110680343 4198624 3029430..3030401 1 NC_008209.1 3-oxoacyl-ACP synthase 3030401 fabH 4198624 fabH Roseobacter denitrificans OCh 114 3-oxoacyl-ACP synthase YP_683350.1 3029430 D 375451 CDS YP_683351.1 110680344 4198625 3030463..3030801 1 NC_008209.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3030801 ihfA 4198625 ihfA Roseobacter denitrificans OCh 114 integration host factor subunit alpha YP_683351.1 3030463 D 375451 CDS YP_683352.1 110680345 4198626 3030806..3032023 1 NC_008209.1 hypothetical protein 3032023 4198626 RD1_3158 Roseobacter denitrificans OCh 114 hypothetical protein YP_683352.1 3030806 D 375451 CDS YP_683353.1 110680346 4198628 3032224..3033300 1 NC_008209.1 Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 3033300 4198628 RD1_3160 Roseobacter denitrificans OCh 114 2'-deoxycytidine 5'-triphosphate deaminase YP_683353.1 3032224 D 375451 CDS YP_683354.1 110680347 4198629 complement(3033352..3033957) 1 NC_008209.1 hypothetical protein 3033957 4198629 RD1_3161 Roseobacter denitrificans OCh 114 hypothetical protein YP_683354.1 3033352 R 375451 CDS YP_683355.1 110680348 4198630 complement(3034020..3034811) 1 NC_008209.1 hypothetical protein 3034811 4198630 RD1_3162 Roseobacter denitrificans OCh 114 hypothetical protein YP_683355.1 3034020 R 375451 CDS YP_683356.1 110680349 4198631 complement(3034827..3035825) 1 NC_008209.1 beta-hexosaminidase 3035825 nagZ 4198631 nagZ Roseobacter denitrificans OCh 114 beta-hexosaminidase YP_683356.1 3034827 R 375451 CDS YP_683357.1 110680350 4198632 complement(3035829..3036797) 1 NC_008209.1 hypothetical protein 3036797 4198632 RD1_3164 Roseobacter denitrificans OCh 114 hypothetical protein YP_683357.1 3035829 R 375451 CDS YP_683358.1 110680351 4198633 complement(3036879..3038621) 1 NC_008209.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3038621 argS 4198633 argS Roseobacter denitrificans OCh 114 arginyl-tRNA synthetase YP_683358.1 3036879 R 375451 CDS YP_683359.1 110680352 4198634 complement(3038716..3038850) 1 NC_008209.1 hypothetical protein 3038850 4198634 RD1_3166 Roseobacter denitrificans OCh 114 hypothetical protein YP_683359.1 3038716 R 375451 CDS YP_683360.1 110680353 4198635 complement(3038914..3040077) 1 NC_008209.1 deoxyguanosinetriphosphate triphosphohydrolase 3040077 4198635 RD1_3167 Roseobacter denitrificans OCh 114 deoxyguanosinetriphosphate triphosphohydrolase YP_683360.1 3038914 R 375451 CDS YP_683361.1 110680354 4198636 3040159..3040482 1 NC_008209.1 FeS cluster assembly HesB family protein 3040482 4198636 RD1_3168 Roseobacter denitrificans OCh 114 FeS cluster assembly HesB family protein YP_683361.1 3040159 D 375451 CDS YP_683362.1 110680355 4198637 complement(3040519..3041568) 1 NC_008209.1 hypothetical protein 3041568 4198637 RD1_3169 Roseobacter denitrificans OCh 114 hypothetical protein YP_683362.1 3040519 R 375451 CDS YP_683363.1 110680356 4198638 complement(3041645..3041971) 1 NC_008209.1 hypothetical protein 3041971 4198638 RD1_3170 Roseobacter denitrificans OCh 114 hypothetical protein YP_683363.1 3041645 R 375451 CDS YP_683364.1 110680357 4198639 3042283..3043065 1 NC_008209.1 exodeoxyribonuclease III 3043065 xth 4198639 xth Roseobacter denitrificans OCh 114 exodeoxyribonuclease III YP_683364.1 3042283 D 375451 CDS YP_683365.1 110680358 4198640 complement(3043066..3043698) 1 NC_008209.1 hypothetical protein 3043698 4198640 RD1_3172 Roseobacter denitrificans OCh 114 hypothetical protein YP_683365.1 3043066 R 375451 CDS YP_683366.1 110680359 4198603 complement(3043929..3044513) 1 NC_008209.1 HNH endonuclease family protein 3044513 4198603 RD1_3173 Roseobacter denitrificans OCh 114 HNH endonuclease family protein YP_683366.1 3043929 R 375451 CDS YP_683367.1 110680360 4198604 3044777..3045121 1 NC_008209.1 hypothetical protein 3045121 4198604 RD1_3174 Roseobacter denitrificans OCh 114 hypothetical protein YP_683367.1 3044777 D 375451 CDS YP_683368.1 110680361 4198605 complement(3045122..3045787) 1 NC_008209.1 phospholipase/carboxylesterase family protein 3045787 4198605 RD1_3175 Roseobacter denitrificans OCh 114 phospholipase/carboxylesterase family protein YP_683368.1 3045122 R 375451 CDS YP_683369.1 110680362 4198606 complement(3045784..3046413) 1 NC_008209.1 DNA-3-methyladenine glycosylase II 3046413 4198606 RD1_3176 Roseobacter denitrificans OCh 114 DNA-3-methyladenine glycosylase II YP_683369.1 3045784 R 375451 CDS YP_683370.1 110680363 4198607 complement(3046410..3047156) 1 NC_008209.1 precorrin-6A reductase 3047156 cobK 4198607 cobK Roseobacter denitrificans OCh 114 precorrin-6A reductase YP_683370.1 3046410 R 375451 CDS YP_683371.1 110680364 4198608 3047233..3048444 1 NC_008209.1 MSF transporter protein, permease component 3048444 4198608 RD1_3179 Roseobacter denitrificans OCh 114 MSF transporter protein, permease component YP_683371.1 3047233 D 375451 CDS YP_683372.1 110680365 4198609 complement(3048462..3049241) 1 NC_008209.1 hypothetical protein 3049241 4198609 RD1_3180 Roseobacter denitrificans OCh 114 hypothetical protein YP_683372.1 3048462 R 375451 CDS YP_683373.1 110680366 4198610 complement(3049238..3049396) 1 NC_008209.1 hypothetical protein 3049396 4198610 RD1_3181 Roseobacter denitrificans OCh 114 hypothetical protein YP_683373.1 3049238 R 375451 CDS YP_683374.1 110680367 4198611 complement(3049393..3051012) 1 NC_008209.1 alpha-isopropylmalate synthase 3051012 4198611 RD1_3182 Roseobacter denitrificans OCh 114 alpha-isopropylmalate synthase YP_683374.1 3049393 R 375451 CDS YP_683375.1 110680368 4198612 complement(3051275..3052696) 1 NC_008209.1 cysteinyl-tRNA synthetase 3052696 cysS 4198612 cysS Roseobacter denitrificans OCh 114 cysteinyl-tRNA synthetase YP_683375.1 3051275 R 375451 CDS YP_683376.1 110680369 4198613 3052708..3052866 1 NC_008209.1 hypothetical protein 3052866 4198613 RD1_3184 Roseobacter denitrificans OCh 114 hypothetical protein YP_683376.1 3052708 D 375451 CDS YP_683377.1 110680370 4198614 3052918..3054108 1 NC_008209.1 aspartate aminotransferase 3054108 aspC 4198614 aspC Roseobacter denitrificans OCh 114 aspartate aminotransferase YP_683377.1 3052918 D 375451 CDS YP_683378.1 110680371 4198615 complement(3054148..3054396) 1 NC_008209.1 hypothetical protein 3054396 4198615 RD1_3187 Roseobacter denitrificans OCh 114 hypothetical protein YP_683378.1 3054148 R 375451 CDS YP_683379.1 110680372 4198616 3054433..3055971 1 NC_008209.1 trimethylamine methyltransferase family protein 3055971 4198616 RD1_3188 Roseobacter denitrificans OCh 114 trimethylamine methyltransferase family protein YP_683379.1 3054433 D 375451 CDS YP_683380.1 110680373 4198617 3056046..3056177 1 NC_008209.1 hypothetical protein 3056177 4198617 RD1_3189 Roseobacter denitrificans OCh 114 hypothetical protein YP_683380.1 3056046 D 375451 CDS YP_683381.1 110680374 4198618 complement(3056248..3056481) 1 NC_008209.1 hypothetical protein 3056481 4198618 RD1_3190 Roseobacter denitrificans OCh 114 hypothetical protein YP_683381.1 3056248 R 375451 CDS YP_683382.1 110680375 4198619 complement(3056552..3056746) 1 NC_008209.1 hypothetical protein 3056746 4198619 RD1_3191 Roseobacter denitrificans OCh 114 hypothetical protein YP_683382.1 3056552 R 375451 CDS YP_683383.1 110680376 4198620 complement(3056743..3057201) 1 NC_008209.1 acetyltransferase 3057201 4198620 RD1_3192 Roseobacter denitrificans OCh 114 acetyltransferase YP_683383.1 3056743 R 375451 CDS YP_683384.1 110680377 4198621 complement(3057624..3061268) 1 NC_008209.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3061268 nrdJ 4198621 nrdJ Roseobacter denitrificans OCh 114 ribonucleotide-diphosphate reductase subunit alpha YP_683384.1 3057624 R 375451 CDS YP_683385.1 110680378 4198584 complement(3061615..3061797) 1 NC_008209.1 hypothetical protein 3061797 4198584 RD1_3194 Roseobacter denitrificans OCh 114 hypothetical protein YP_683385.1 3061615 R 375451 CDS YP_683386.1 110680379 4198586 complement(3062134..3062625) 1 NC_008209.1 hypothetical protein 3062625 4198586 RD1_3196 Roseobacter denitrificans OCh 114 hypothetical protein YP_683386.1 3062134 R 375451 CDS YP_683387.1 110680380 4198587 complement(3062592..3063128) 1 NC_008209.1 cold shock protein 3063128 4198587 RD1_3197 Roseobacter denitrificans OCh 114 cold shock protein YP_683387.1 3062592 R 375451 CDS YP_683388.1 110680381 4198588 complement(3063410..3064015) 1 NC_008209.1 pyridoxamine 5'-phosphate oxidase 3064015 pdxH 4198588 pdxH Roseobacter denitrificans OCh 114 pyridoxamine 5'-phosphate oxidase YP_683388.1 3063410 R 375451 CDS YP_683389.1 110680382 4198589 3064112..3064987 1 NC_008209.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 3064987 fabI-2 4198589 fabI-2 Roseobacter denitrificans OCh 114 enoyl-ACP reductase YP_683389.1 3064112 D 375451 CDS YP_683390.1 110680383 4198590 3064992..3065606 1 NC_008209.1 threonine efflux protein 3065606 4198590 RD1_3200 Roseobacter denitrificans OCh 114 threonine efflux protein YP_683390.1 3064992 D 375451 CDS YP_683391.1 110680384 4198591 3065612..3066142 1 NC_008209.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3066142 gpt 4198591 gpt Roseobacter denitrificans OCh 114 xanthine-guanine phosphoribosyltransferase YP_683391.1 3065612 D 375451 CDS YP_683392.1 110680385 4198592 3066161..3067336 1 NC_008209.1 hypothetical protein 3067336 aspC 4198592 aspC Roseobacter denitrificans OCh 114 hypothetical protein YP_683392.1 3066161 D 375451 CDS YP_683393.1 110680386 4198593 3067420..3069258 1 NC_008209.1 peptidyl-prolyl cis-trans isomerse D 3069258 4198593 RD1_3203 Roseobacter denitrificans OCh 114 peptidyl-prolyl cis-trans isomerse D YP_683393.1 3067420 D 375451 CDS YP_683394.1 110680387 4198594 3069265..3070776 1 NC_008209.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3070776 trpE 4198594 trpE Roseobacter denitrificans OCh 114 anthranilate synthase component I YP_683394.1 3069265 D 375451 CDS YP_683395.1 110680388 4198595 3070780..3071817 1 NC_008209.1 hypothetical protein 3071817 4198595 RD1_3206 Roseobacter denitrificans OCh 114 hypothetical protein YP_683395.1 3070780 D 375451 CDS YP_683396.1 110680389 4198596 3072052..3074097 1 NC_008209.1 diguanylate cyclase 3074097 4198596 RD1_3207 Roseobacter denitrificans OCh 114 diguanylate cyclase YP_683396.1 3072052 D 375451 CDS YP_683397.1 110680390 4198597 complement(3074113..3076059) 1 NC_008209.1 hypothetical protein 3076059 4198597 RD1_3208 Roseobacter denitrificans OCh 114 hypothetical protein YP_683397.1 3074113 R 375451 CDS YP_683398.1 110680391 4198598 3076194..3076775 1 NC_008209.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 3076775 trpG 4198598 trpG Roseobacter denitrificans OCh 114 anthranilate synthase component II YP_683398.1 3076194 D 375451 CDS YP_683399.1 110680392 4198599 3076784..3077791 1 NC_008209.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3077791 trpD 4198599 trpD Roseobacter denitrificans OCh 114 anthranilate phosphoribosyltransferase YP_683399.1 3076784 D 375451 CDS YP_683400.1 110680393 4198600 3077794..3078450 1 NC_008209.1 uracil-DNA glycosylase 3078450 ung 4198600 ung Roseobacter denitrificans OCh 114 uracil-DNA glycosylase YP_683400.1 3077794 D 375451 CDS YP_683401.1 110680394 4198601 3078447..3079259 1 NC_008209.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 3079259 trpC 4198601 trpC Roseobacter denitrificans OCh 114 indole-3-glycerol phosphate synthase YP_683401.1 3078447 D 375451 CDS YP_683402.1 110680395 4198602 3079261..3079740 1 NC_008209.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 3079740 moaC 4198602 moaC Roseobacter denitrificans OCh 114 molybdenum cofactor biosynthesis protein MoaC YP_683402.1 3079261 D 375451 CDS YP_683403.1 110680396 4198565 3079737..3080909 1 NC_008209.1 molybdenum cofactor biosynthesis protein A 3080909 moaA 4198565 moaA Roseobacter denitrificans OCh 114 molybdenum cofactor biosynthesis protein A YP_683403.1 3079737 D 375451 CDS YP_683404.1 110680397 4198566 3080979..3081680 1 NC_008209.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3081680 lexA 4198566 lexA Roseobacter denitrificans OCh 114 LexA repressor YP_683404.1 3080979 D 375451 CDS YP_683405.1 110680398 4198567 complement(3081674..3083785) 1 NC_008209.1 competence protein 3083785 com 4198567 com Roseobacter denitrificans OCh 114 competence protein YP_683405.1 3081674 R 375451 CDS YP_683406.1 110680399 4198568 3083810..3085210 1 NC_008209.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3085210 gltX 4198568 gltX Roseobacter denitrificans OCh 114 glutamyl-tRNA synthetase YP_683406.1 3083810 D 375451 CDS YP_683407.1 110680400 4198569 3085317..3086612 1 NC_008209.1 citrate synthase 3086612 gltA 4198569 gltA Roseobacter denitrificans OCh 114 citrate synthase YP_683407.1 3085317 D 375451 CDS YP_683408.1 110680401 4198570 3086849..3087217 1 NC_008209.1 hypothetical protein 3087217 4198570 RD1_3220 Roseobacter denitrificans OCh 114 hypothetical protein YP_683408.1 3086849 D 375451 CDS YP_683409.1 110680402 4198571 complement(3087223..3087999) 1 NC_008209.1 enoyl-CoA hydratase/isomerase family protein 3087999 paaB 4198571 paaB Roseobacter denitrificans OCh 114 enoyl-CoA hydratase/isomerase family protein YP_683409.1 3087223 R 375451 CDS YP_683410.1 110680403 4198572 complement(3088070..3088525) 1 NC_008209.1 cytochrome c-type biogenesis protein 3088525 cycL 4198572 cycL Roseobacter denitrificans OCh 114 cytochrome c-type biogenesis protein YP_683410.1 3088070 R 375451 CDS YP_683411.1 110680404 4198573 complement(3088522..3090495) 1 NC_008209.1 cytochrome c-type biogenesis protein 3090495 cycK 4198573 cycK Roseobacter denitrificans OCh 114 cytochrome c-type biogenesis protein YP_683411.1 3088522 R 375451 CDS YP_683412.1 110680405 4198574 complement(3090554..3091144) 1 NC_008209.1 hypothetical protein 3091144 4198574 RD1_3224 Roseobacter denitrificans OCh 114 hypothetical protein YP_683412.1 3090554 R 375451 CDS YP_683413.1 110680406 4198575 complement(3091135..3091689) 1 NC_008209.1 hypothetical protein 3091689 4198575 RD1_3225 Roseobacter denitrificans OCh 114 hypothetical protein YP_683413.1 3091135 R 375451 CDS YP_683414.1 110680407 4198576 complement(3091826..3092269) 1 NC_008209.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3092269 cycJ 4198576 cycJ Roseobacter denitrificans OCh 114 cytochrome c-type biogenesis protein CcmE YP_683414.1 3091826 R 375451 CDS YP_683415.1 110680408 4198577 complement(3092277..3093305) 1 NC_008209.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 3093305 argC 4198577 argC Roseobacter denitrificans OCh 114 N-acetyl-gamma-glutamyl-phosphate reductase YP_683415.1 3092277 R 375451 CDS YP_683416.1 110680409 4198578 complement(3093336..3094145) 1 NC_008209.1 glutamate racemase 3094145 murI 4198578 murI Roseobacter denitrificans OCh 114 glutamate racemase YP_683416.1 3093336 R 375451 CDS YP_683417.1 110680410 4198579 complement(3094170..3095054) 1 NC_008209.1 acyltransferase domain-containing protein 3095054 4198579 RD1_3229 Roseobacter denitrificans OCh 114 acyltransferase domain-containing protein YP_683417.1 3094170 R 375451 CDS YP_683418.1 110680411 4198580 complement(3095127..3098525) 1 NC_008209.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3098525 4198580 RD1_3230 Roseobacter denitrificans OCh 114 indolepyruvate ferredoxin oxidoreductase YP_683418.1 3095127 R 375451 CDS YP_683419.1 110680412 4198581 3098694..3099599 1 NC_008209.1 LysR family transcriptional regulator 3099599 4198581 RD1_3231 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_683419.1 3098694 D 375451 CDS YP_683420.1 110680413 4198582 3099884..3102043 1 NC_008209.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 3102043 purL 4198582 purL Roseobacter denitrificans OCh 114 phosphoribosylformylglycinamidine synthase II YP_683420.1 3099884 D 375451 CDS YP_683421.1 110680414 4198583 complement(3102127..3103392) 1 NC_008209.1 von Willebrand factor A 3103392 4198583 RD1_3233 Roseobacter denitrificans OCh 114 von Willebrand factor A YP_683421.1 3102127 R 375451 CDS YP_683422.1 110680415 4198545 complement(3103441..3104349) 1 NC_008209.1 hypothetical protein 3104349 4198545 RD1_3234 Roseobacter denitrificans OCh 114 hypothetical protein YP_683422.1 3103441 R 375451 CDS YP_683423.1 110680416 4198546 3104588..3105622 1 NC_008209.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3105622 pyrC 4198546 pyrC Roseobacter denitrificans OCh 114 dihydroorotase YP_683423.1 3104588 D 375451 CDS YP_683424.1 110680417 4198547 3105675..3106352 1 NC_008209.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3106352 pyrE 4198547 pyrE Roseobacter denitrificans OCh 114 orotate phosphoribosyltransferase YP_683424.1 3105675 D 375451 CDS YP_683425.1 110680418 4198548 3106588..3108081 1 NC_008209.1 unwinds double stranded DNA; replicative DNA helicase 3108081 dnaB 4198548 dnaB Roseobacter denitrificans OCh 114 replicative DNA helicase YP_683425.1 3106588 D 375451 CDS YP_683426.1 110680419 4198549 3108363..3108932 1 NC_008209.1 hypothetical protein 3108932 4198549 RD1_3238 Roseobacter denitrificans OCh 114 hypothetical protein YP_683426.1 3108363 D 375451 CDS YP_683427.1 110680420 4198550 3109038..3109136 1 NC_008209.1 hypothetical protein 3109136 4198550 RD1_3239 Roseobacter denitrificans OCh 114 hypothetical protein YP_683427.1 3109038 D 375451 CDS YP_683428.1 110680421 4198551 3109167..3110201 1 NC_008209.1 alanine racemase 3110201 alr 4198551 alr Roseobacter denitrificans OCh 114 alanine racemase YP_683428.1 3109167 D 375451 CDS YP_683429.1 110680422 4198552 3110198..3110971 1 NC_008209.1 hypothetical protein 3110971 4198552 RD1_3241 Roseobacter denitrificans OCh 114 hypothetical protein YP_683429.1 3110198 D 375451 CDS YP_683430.1 110680423 4198553 3110968..3111714 1 NC_008209.1 ABC transporter ATP-binding protein 3111714 4198553 RD1_3243 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_683430.1 3110968 D 375451 CDS YP_683431.1 110680424 4198554 3111895..3112548 1 NC_008209.1 hypothetical protein 3112548 4198554 RD1_3244 Roseobacter denitrificans OCh 114 hypothetical protein YP_683431.1 3111895 D 375451 CDS YP_683432.1 110680425 4198555 3112701..3114062 1 NC_008209.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3114062 radA 4198555 radA Roseobacter denitrificans OCh 114 DNA repair protein RadA YP_683432.1 3112701 D 375451 CDS YP_683433.1 110680426 4198556 3114090..3114644 1 NC_008209.1 CvpA family protein 3114644 4198556 RD1_3246 Roseobacter denitrificans OCh 114 CvpA family protein YP_683433.1 3114090 D 375451 CDS YP_683434.1 110680427 4198557 3114831..3116315 1 NC_008209.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3116315 4198557 RD1_3247 Roseobacter denitrificans OCh 114 amidophosphoribosyltransferase YP_683434.1 3114831 D 375451 CDS YP_683435.1 110680428 4198558 3116425..3117060 1 NC_008209.1 oxidoreductase 3117060 4198558 RD1_3248 Roseobacter denitrificans OCh 114 oxidoreductase YP_683435.1 3116425 D 375451 CDS YP_683436.1 110680429 4198559 3117149..3117934 1 NC_008209.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3117934 surE 4198559 surE Roseobacter denitrificans OCh 114 stationary phase survival protein SurE YP_683436.1 3117149 D 375451 CDS YP_683437.1 110680430 4198560 3117943..3118584 1 NC_008209.1 protein-L-isoaspartate O-methyltransferase 3118584 pcm 4198560 pcm Roseobacter denitrificans OCh 114 protein-L-isoaspartate O-methyltransferase YP_683437.1 3117943 D 375451 CDS YP_683438.1 110680431 4198561 3118658..3119860 1 NC_008209.1 LysM domain-containing protein 3119860 lysM 4198561 lysM Roseobacter denitrificans OCh 114 LysM domain-containing protein YP_683438.1 3118658 D 375451 CDS YP_683439.1 110680432 4198562 complement(3119938..3120783) 1 NC_008209.1 hypothetical protein 3120783 4198562 RD1_3252 Roseobacter denitrificans OCh 114 hypothetical protein YP_683439.1 3119938 R 375451 CDS YP_683440.1 110680433 4198563 complement(3120780..3121628) 1 NC_008209.1 Sec-independent protein translocase TatC 3121628 tatC 4198563 tatC Roseobacter denitrificans OCh 114 Sec-independent protein translocase TatC YP_683440.1 3120780 R 375451 CDS YP_683441.1 110680434 4198564 complement(3121625..3122080) 1 NC_008209.1 Sec-independent protein translocase tatB-like protein 3122080 tatB 4198564 tatB Roseobacter denitrificans OCh 114 Sec-independent protein translocase tatB-like protein YP_683441.1 3121625 R 375451 CDS YP_683442.1 110680435 4198526 complement(3122084..3122296) 1 NC_008209.1 twin arginine-targeting protein translocase 3122296 4198526 RD1_3255 Roseobacter denitrificans OCh 114 twin arginine-targeting protein translocase YP_683442.1 3122084 R 375451 CDS YP_683443.1 110680436 4198527 3122515..3122844 1 NC_008209.1 hypothetical protein 3122844 4198527 RD1_3256 Roseobacter denitrificans OCh 114 hypothetical protein YP_683443.1 3122515 D 375451 CDS YP_683444.1 110680437 4198528 3122831..3123496 1 NC_008209.1 transcriptional regulator 3123496 4198528 RD1_3257 Roseobacter denitrificans OCh 114 transcriptional regulator YP_683444.1 3122831 D 375451 CDS YP_683445.1 110680438 4198529 complement(3123550..3123909) 1 NC_008209.1 hypothetical protein 3123909 4198529 RD1_3258 Roseobacter denitrificans OCh 114 hypothetical protein YP_683445.1 3123550 R 375451 CDS YP_683446.1 110680439 4198530 complement(3123902..3124252) 1 NC_008209.1 hypothetical protein 3124252 4198530 RD1_3259 Roseobacter denitrificans OCh 114 hypothetical protein YP_683446.1 3123902 R 375451 CDS YP_683447.1 110680440 4198531 complement(3124252..3125358) 1 NC_008209.1 iron ABC transporter ATP-binding protein 3125358 4198531 RD1_3260 Roseobacter denitrificans OCh 114 iron ABC transporter ATP-binding protein YP_683447.1 3124252 R 375451 CDS YP_683448.1 110680441 4198532 complement(3125489..3126268) 1 NC_008209.1 oxidoreductase 3126268 4198532 RD1_3261 Roseobacter denitrificans OCh 114 oxidoreductase YP_683448.1 3125489 R 375451 CDS YP_683449.1 110680442 4198533 3126388..3127995 1 NC_008209.1 peptide chain release factor 3 3127995 prfC 4198533 prfC Roseobacter denitrificans OCh 114 peptide chain release factor 3 YP_683449.1 3126388 D 375451 CDS YP_683450.1 110680443 4198534 3128176..3129693 1 NC_008209.1 ATP-dependent RNA helicase 3129693 rhlE 4198534 rhlE Roseobacter denitrificans OCh 114 ATP-dependent RNA helicase YP_683450.1 3128176 D 375451 CDS YP_683451.1 110680444 4198535 complement(3129716..3129835) 1 NC_008209.1 hypothetical protein 3129835 4198535 RD1_3264 Roseobacter denitrificans OCh 114 hypothetical protein YP_683451.1 3129716 R 375451 CDS YP_683452.1 110680445 4198536 complement(3129856..3131523) 1 NC_008209.1 metallo-beta-lactamase family protein 3131523 4198536 RD1_3265 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_683452.1 3129856 R 375451 CDS YP_683453.1 110680446 4198537 complement(3131528..3132301) 1 NC_008209.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 3132301 4198537 RD1_3266 Roseobacter denitrificans OCh 114 pantothenate kinase YP_683453.1 3131528 R 375451 CDS YP_683454.1 110680447 4198538 complement(3132320..3133081) 1 NC_008209.1 biotin--acetyl-CoA-carboxylase ligase 3133081 4198538 RD1_3267 Roseobacter denitrificans OCh 114 biotin--acetyl-CoA-carboxylase ligase YP_683454.1 3132320 R 375451 CDS YP_683455.1 110680448 4198539 complement(3133115..3134557) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 3134557 nuoN 4198539 nuoN Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit N YP_683455.1 3133115 R 375451 CDS YP_683456.1 110680449 4198540 complement(3134570..3136111) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 3136111 nuoM 4198540 nuoM Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit M YP_683456.1 3134570 R 375451 CDS YP_683457.1 110680450 4198541 complement(3136111..3138216) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 3138216 nuoL 4198541 nuoL Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit L YP_683457.1 3136111 R 375451 CDS YP_683458.1 110680451 4198542 complement(3138348..3138653) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 3138653 nuoK 4198542 nuoK Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit K YP_683458.1 3138348 R 375451 CDS YP_683459.1 110680452 4198543 complement(3138700..3139275) 1 NC_008209.1 hypothetical protein 3139275 4198543 RD1_3272 Roseobacter denitrificans OCh 114 hypothetical protein YP_683459.1 3138700 R 375451 CDS YP_683460.1 110680453 4198544 complement(3139291..3139893) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 3139893 nuoJ 4198544 nuoJ Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit J YP_683460.1 3139291 R 375451 CDS YP_683461.1 110680454 4195228 complement(3139894..3140310) 1 NC_008209.1 carboxymuconolactone decarboxylase 3140310 4195228 RD1_3274 Roseobacter denitrificans OCh 114 carboxymuconolactone decarboxylase YP_683461.1 3139894 R 375451 CDS YP_683462.1 110680455 4195229 complement(3140307..3140801) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 3140801 nuoI 4195229 nuoI Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit I YP_683462.1 3140307 R 375451 CDS YP_683463.1 110680456 4195230 complement(3140803..3141840) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 3141840 nuoH 4195230 nuoH Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit H YP_683463.1 3140803 R 375451 CDS YP_683464.1 110680457 4195231 complement(3141847..3142188) 1 NC_008209.1 lipoprotein 3142188 4195231 RD1_3277 Roseobacter denitrificans OCh 114 lipoprotein YP_683464.1 3141847 R 375451 CDS YP_683465.1 110680458 4195232 complement(3142185..3144200) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 3144200 nuoG 4195232 nuoG Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit G YP_683465.1 3142185 R 375451 CDS YP_683466.1 110680459 4195233 complement(3144242..3144736) 1 NC_008209.1 hypothetical protein 3144736 4195233 RD1_3279 Roseobacter denitrificans OCh 114 hypothetical protein YP_683466.1 3144242 R 375451 CDS YP_683467.1 110680460 4195234 complement(3144765..3145139) 1 NC_008209.1 hypothetical protein 3145139 4195234 RD1_3280 Roseobacter denitrificans OCh 114 hypothetical protein YP_683467.1 3144765 R 375451 CDS YP_683468.1 110680461 4195235 complement(3145100..3145600) 1 NC_008209.1 hypothetical protein 3145600 4195235 RD1_3281 Roseobacter denitrificans OCh 114 hypothetical protein YP_683468.1 3145100 R 375451 CDS YP_683469.1 110680462 4195236 complement(3145812..3147107) 1 NC_008209.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 3147107 nuoF 4195236 nuoF Roseobacter denitrificans OCh 114 NADH dehydrogenase I subunit F YP_683469.1 3145812 R 375451 CDS YP_683470.1 110680463 4195237 complement(3147120..3147368) 1 NC_008209.1 hypothetical protein 3147368 4195237 RD1_3283 Roseobacter denitrificans OCh 114 hypothetical protein YP_683470.1 3147120 R 375451 CDS YP_683471.1 110680464 4195238 complement(3147396..3148094) 1 NC_008209.1 hypothetical protein 3148094 4195238 RD1_3284 Roseobacter denitrificans OCh 114 hypothetical protein YP_683471.1 3147396 R 375451 CDS YP_683472.1 110680465 4195239 complement(3148124..3149203) 1 NC_008209.1 catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit E 3149203 nuoE 4195239 nuoE Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit E YP_683472.1 3148124 R 375451 CDS YP_683473.1 110680466 4195240 complement(3149216..3149308) 1 NC_008209.1 hypothetical protein 3149308 4195240 RD1_3286 Roseobacter denitrificans OCh 114 hypothetical protein YP_683473.1 3149216 R 375451 CDS YP_683474.1 110680467 4195241 complement(3149305..3150528) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 3150528 nuoD 4195241 nuoD Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit D YP_683474.1 3149305 R 375451 CDS YP_683475.1 110680468 4195242 complement(3150530..3150706) 1 NC_008209.1 hypothetical protein 3150706 4195242 RD1_3288 Roseobacter denitrificans OCh 114 hypothetical protein YP_683475.1 3150530 R 375451 CDS YP_683476.1 110680469 4195243 complement(3150766..3151743) 1 NC_008209.1 hypothetical protein 3151743 4195243 RD1_3289 Roseobacter denitrificans OCh 114 hypothetical protein YP_683476.1 3150766 R 375451 CDS YP_683477.1 110680470 4195244 complement(3151740..3152339) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 3152339 nuoC 4195244 nuoC Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit C YP_683477.1 3151740 R 375451 CDS YP_683478.1 110680471 4195245 complement(3152379..3152912) 1 NC_008209.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 3152912 nuoB 4195245 nuoB Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit B YP_683478.1 3152379 R 375451 CDS YP_683479.1 110680472 4195246 complement(3153231..3153596) 1 NC_008209.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 3153596 nuoA 4195246 nuoA Roseobacter denitrificans OCh 114 NADH dehydrogenase subunit A YP_683479.1 3153231 R 375451 CDS YP_683480.1 110680473 4195247 3153832..3154356 1 NC_008209.1 hypothetical protein 3154356 4195247 RD1_3293 Roseobacter denitrificans OCh 114 hypothetical protein YP_683480.1 3153832 D 375451 CDS YP_683481.1 110680474 4195363 complement(3154429..3155211) 1 NC_008209.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3155211 4195363 RD1_3294 Roseobacter denitrificans OCh 114 enoyl-CoA hydratase YP_683481.1 3154429 R 375451 CDS YP_683482.1 110680475 4195364 complement(3155221..3156093) 1 NC_008209.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 3156093 mvaB 4195364 mvaB Roseobacter denitrificans OCh 114 hydroxymethylglutaryl-CoA lyase YP_683482.1 3155221 R 375451 CDS YP_683483.1 110680476 4195365 complement(3156122..3156787) 1 NC_008209.1 glutathione S-transferase 3156787 gst 4195365 gst Roseobacter denitrificans OCh 114 glutathione S-transferase YP_683483.1 3156122 R 375451 CDS YP_683484.1 110680477 4195366 complement(3156784..3158721) 1 NC_008209.1 methylcrotonyl-CoA carboxylase subunit alpha 3158721 mccA 4195366 mccA Roseobacter denitrificans OCh 114 methylcrotonyl-CoA carboxylase subunit alpha YP_683484.1 3156784 R 375451 CDS YP_683485.1 110680478 4195367 complement(3158799..3160403) 1 NC_008209.1 methylcrotonyl-CoA carboxylase subunit beta 3160403 mccB 4195367 mccB Roseobacter denitrificans OCh 114 methylcrotonyl-CoA carboxylase subunit beta YP_683485.1 3158799 R 375451 CDS YP_683486.1 110680479 4195368 complement(3160450..3160770) 1 NC_008209.1 hypothetical protein 3160770 4195368 RD1_3299 Roseobacter denitrificans OCh 114 hypothetical protein YP_683486.1 3160450 R 375451 CDS YP_683487.1 110680480 4195369 3160893..3161498 1 NC_008209.1 outer membrane protein W 3161498 ompW 4195369 ompW Roseobacter denitrificans OCh 114 outer membrane protein W YP_683487.1 3160893 D 375451 CDS YP_683488.1 110680481 4195370 complement(3161545..3162708) 1 NC_008209.1 isovaleryl-CoA dehydrogenase 3162708 ivd 4195370 ivd Roseobacter denitrificans OCh 114 isovaleryl-CoA dehydrogenase YP_683488.1 3161545 R 375451 CDS YP_683489.1 110680482 4195371 complement(3162897..3164093) 1 NC_008209.1 aminotransferase 3164093 4195371 RD1_3302 Roseobacter denitrificans OCh 114 aminotransferase YP_683489.1 3162897 R 375451 CDS YP_683490.1 110680483 4195372 complement(3164141..3164806) 1 NC_008209.1 phosphoglycolate phosphatase 3164806 gph 4195372 gph Roseobacter denitrificans OCh 114 phosphoglycolate phosphatase YP_683490.1 3164141 R 375451 CDS YP_683491.1 110680484 4195373 3164940..3166292 1 NC_008209.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3166292 glmU 4195373 glmU Roseobacter denitrificans OCh 114 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_683491.1 3164940 D 375451 CDS YP_683492.1 110680485 4195374 3166295..3168115 1 NC_008209.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3168115 glmS 4195374 glmS Roseobacter denitrificans OCh 114 glucosamine--fructose-6-phosphate aminotransferase YP_683492.1 3166295 D 375451 CDS YP_683493.1 110680486 4195375 3168343..3168897 1 NC_008209.1 pyridoxamine 5'-phosphate oxidase family protein 3168897 4195375 RD1_3306 Roseobacter denitrificans OCh 114 pyridoxamine 5'-phosphate oxidase family protein YP_683493.1 3168343 D 375451 CDS YP_683494.1 110680487 4195376 3168991..3169998 1 NC_008209.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 3169998 moaA 4195376 moaA Roseobacter denitrificans OCh 114 molybdenum cofactor biosynthesis protein A YP_683494.1 3168991 D 375451 CDS YP_683495.1 110680488 4195377 3170007..3171302 1 NC_008209.1 3-deoxy-D-manno-octulosonic acid transferase 3171302 kdtA 4195377 kdtA Roseobacter denitrificans OCh 114 3-deoxy-D-manno-octulosonic acid transferase YP_683495.1 3170007 D 375451 CDS YP_683496.1 110680489 4195378 3171302..3172372 1 NC_008209.1 lipopolysaccharide core biosynthesis mannosyltransferase 3172372 lpcC 4195378 lpcC Roseobacter denitrificans OCh 114 lipopolysaccharide core biosynthesis mannosyltransferase YP_683496.1 3171302 D 375451 CDS YP_683497.1 110680490 4195379 complement(3172469..3173632) 1 NC_008209.1 amidohydrolase 3173632 4195379 RD1_3310 Roseobacter denitrificans OCh 114 amidohydrolase YP_683497.1 3172469 R 375451 CDS YP_683498.1 110680491 4195380 complement(3173988..3175151) 1 NC_008209.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 3175151 argE 4195380 argE Roseobacter denitrificans OCh 114 acetylornithine deacetylase YP_683498.1 3173988 R 375451 CDS YP_683499.1 110680492 4195461 3177368..3179098 1 NC_008209.1 peptide ABC transporter substrate-binding protein 3179098 4195461 RD1_3314 Roseobacter denitrificans OCh 114 peptide ABC transporter substrate-binding protein YP_683499.1 3177368 D 375451 CDS YP_683500.1 110680493 4195462 3179220..3180227 1 NC_008209.1 ABC transporter permease 3180227 4195462 RD1_3315 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683500.1 3179220 D 375451 CDS YP_683501.1 110680494 4195463 3180184..3181197 1 NC_008209.1 ABC transporter permease 3181197 4195463 RD1_3316 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683501.1 3180184 D 375451 CDS YP_683502.1 110680495 4195464 complement(3181284..3182576) 1 NC_008209.1 hypothetical protein 3182576 4195464 RD1_3317 Roseobacter denitrificans OCh 114 hypothetical protein YP_683502.1 3181284 R 375451 CDS YP_683503.1 110680496 4195465 complement(3183052..3184548) 1 NC_008209.1 NAD(P) transhydrogenase subunit beta 3184548 pntB 4195465 pntB Roseobacter denitrificans OCh 114 NAD(P) transhydrogenase subunit beta YP_683503.1 3183052 R 375451 CDS YP_683504.1 110680497 4195466 complement(3184562..3186136) 1 NC_008209.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3186136 pntA 4195466 pntA Roseobacter denitrificans OCh 114 NAD(P) transhydrogenase subunit alpha YP_683504.1 3184562 R 375451 CDS YP_683505.1 110680498 4195467 complement(3186262..3186711) 1 NC_008209.1 hypothetical protein 3186711 4195467 RD1_3320 Roseobacter denitrificans OCh 114 hypothetical protein YP_683505.1 3186262 R 375451 CDS YP_683506.1 110680499 4195468 3186971..3187729 1 NC_008209.1 oxidoreductase 3187729 4195468 RD1_3321 Roseobacter denitrificans OCh 114 oxidoreductase YP_683506.1 3186971 D 375451 CDS YP_683507.1 110680500 4195469 complement(3187788..3187901) 1 NC_008209.1 hypothetical protein 3187901 4195469 RD1_3322 Roseobacter denitrificans OCh 114 hypothetical protein YP_683507.1 3187788 R 375451 CDS YP_683508.1 110680501 4195470 complement(3187859..3188635) 1 NC_008209.1 glutamine amidotransferase 3188635 4195470 RD1_3323 Roseobacter denitrificans OCh 114 glutamine amidotransferase YP_683508.1 3187859 R 375451 CDS YP_683509.1 110680502 4195471 3188696..3188794 1 NC_008209.1 hypothetical protein 3188794 4195471 RD1_3324 Roseobacter denitrificans OCh 114 hypothetical protein YP_683509.1 3188696 D 375451 CDS YP_683510.1 110680503 4195472 complement(3188847..3190994) 1 NC_008209.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3190994 glcB 4195472 glcB Roseobacter denitrificans OCh 114 malate synthase G YP_683510.1 3188847 R 375451 CDS YP_683511.1 110680504 4195473 complement(3191238..3191405) 1 NC_008209.1 hypothetical protein 3191405 4195473 RD1_3326 Roseobacter denitrificans OCh 114 hypothetical protein YP_683511.1 3191238 R 375451 CDS YP_683512.1 110680505 4195474 3191509..3194058 1 NC_008209.1 aminopeptidase 3194058 pepN 4195474 pepN Roseobacter denitrificans OCh 114 aminopeptidase YP_683512.1 3191509 D 375451 CDS YP_683513.1 110680506 4195475 3194062..3194802 1 NC_008209.1 short chain dehydrogenase/reductase family oxidoreductase 3194802 4195475 RD1_3328 Roseobacter denitrificans OCh 114 short chain dehydrogenase/reductase family oxidoreductase YP_683513.1 3194062 D 375451 CDS YP_683514.1 110680507 4195476 3194870..3195229 1 NC_008209.1 hypothetical protein 3195229 4195476 RD1_3329 Roseobacter denitrificans OCh 114 hypothetical protein YP_683514.1 3194870 D 375451 CDS YP_683515.1 110680508 4195477 complement(3195242..3195868) 1 NC_008209.1 transglycosylase 3195868 4195477 RD1_3330 Roseobacter denitrificans OCh 114 transglycosylase YP_683515.1 3195242 R 375451 CDS YP_683516.1 110680509 4195478 3196086..3197357 1 NC_008209.1 hypothetical protein 3197357 4195478 RD1_3331 Roseobacter denitrificans OCh 114 hypothetical protein YP_683516.1 3196086 D 375451 CDS YP_683517.1 110680510 4195479 3197371..3197853 1 NC_008209.1 hypothetical protein 3197853 4195479 RD1_3332 Roseobacter denitrificans OCh 114 hypothetical protein YP_683517.1 3197371 D 375451 CDS YP_683518.1 110680511 4195480 3197980..3199491 1 NC_008209.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3199491 gatB 4195480 gatB Roseobacter denitrificans OCh 114 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_683518.1 3197980 D 375451 CDS YP_683519.1 110680512 4195038 3199757..3200560 1 NC_008209.1 hypothetical protein 3200560 4195038 RD1_3334 Roseobacter denitrificans OCh 114 hypothetical protein YP_683519.1 3199757 D 375451 CDS YP_683520.1 110680513 4195039 3200990..3201568 1 NC_008209.1 hypothetical protein 3201568 4195039 RD1_3335 Roseobacter denitrificans OCh 114 hypothetical protein YP_683520.1 3200990 D 375451 CDS YP_683521.1 110680514 4195040 3201688..3202152 1 NC_008209.1 hypothetical protein 3202152 4195040 RD1_3336 Roseobacter denitrificans OCh 114 hypothetical protein YP_683521.1 3201688 D 375451 CDS YP_683522.1 110680515 4195041 complement(3202162..3202419) 1 NC_008209.1 BolA protein 3202419 bolA 4195041 bolA Roseobacter denitrificans OCh 114 BolA protein YP_683522.1 3202162 R 375451 CDS YP_683523.1 110680516 4195042 3202496..3203122 1 NC_008209.1 molecular chaperone DnaJ 3203122 dnaJ 4195042 dnaJ Roseobacter denitrificans OCh 114 molecular chaperone DnaJ YP_683523.1 3202496 D 375451 CDS YP_683524.1 110680517 4195043 3203245..3204231 1 NC_008209.1 aerobic cobaltochelatase CobS subunit 3204231 cobS 4195043 cobS Roseobacter denitrificans OCh 114 aerobic cobaltochelatase CobS subunit YP_683524.1 3203245 D 375451 CDS YP_683525.1 110680518 4195044 3204283..3206160 1 NC_008209.1 aerobic cobaltochelatase CobT subunit 3206160 cobT 4195044 cobT Roseobacter denitrificans OCh 114 aerobic cobaltochelatase CobT subunit YP_683525.1 3204283 D 375451 CDS YP_683526.1 110680519 4195045 3206207..3207997 1 NC_008209.1 M24 family metallopeptidase 3207997 4195045 RD1_3341 Roseobacter denitrificans OCh 114 M24 family metallopeptidase YP_683526.1 3206207 D 375451 CDS YP_683527.1 110680520 4195046 3208073..3208417 1 NC_008209.1 hypothetical protein 3208417 4195046 RD1_3342 Roseobacter denitrificans OCh 114 hypothetical protein YP_683527.1 3208073 D 375451 CDS YP_683528.1 110680521 4195047 complement(3208426..3210111) 1 NC_008209.1 voltage-gated chloride channel protein 3210111 4195047 RD1_3343 Roseobacter denitrificans OCh 114 voltage-gated chloride channel protein YP_683528.1 3208426 R 375451 CDS YP_683529.1 110680522 4195048 complement(3210179..3211906) 1 NC_008209.1 DNA repair protein RecN 3211906 recN 4195048 recN Roseobacter denitrificans OCh 114 DNA repair protein RecN YP_683529.1 3210179 R 375451 CDS YP_683530.1 110680523 4195049 complement(3211863..3212729) 1 NC_008209.1 competence lipoprotein ComL 3212729 comL 4195049 comL Roseobacter denitrificans OCh 114 competence lipoprotein ComL YP_683530.1 3211863 R 375451 CDS YP_683531.1 110680524 4195050 complement(3212907..3213830) 1 NC_008209.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3213830 lpxC 4195050 lpxC Roseobacter denitrificans OCh 114 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_683531.1 3212907 R 375451 CDS YP_683532.2 162139372 4195051 complement(3214034..3215566) 1 NC_008209.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 3215566 ftsZ 4195051 ftsZ Roseobacter denitrificans OCh 114 cell division protein FtsZ YP_683532.2 3214034 R 375451 CDS YP_683533.1 110680526 4195052 complement(3215985..3217319) 1 NC_008209.1 cell division protein FtsA 3217319 ftsA 4195052 ftsA Roseobacter denitrificans OCh 114 cell division protein FtsA YP_683533.1 3215985 R 375451 CDS YP_683534.1 110680527 4195053 complement(3217323..3218132) 1 NC_008209.1 cell division protein FtsQ 3218132 ftsQ 4195053 ftsQ Roseobacter denitrificans OCh 114 cell division protein FtsQ YP_683534.1 3217323 R 375451 CDS YP_683535.1 110680528 4195054 complement(3218192..3219190) 1 NC_008209.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 3219190 ddl 4195054 ddl Roseobacter denitrificans OCh 114 D-alanine--D-alanine ligase YP_683535.1 3218192 R 375451 CDS YP_683536.1 110680529 4195055 complement(3219220..3220149) 1 NC_008209.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 3220149 murB 4195055 murB Roseobacter denitrificans OCh 114 UDP-N-acetylenolpyruvoylglucosamine reductase YP_683536.1 3219220 R 375451 CDS YP_683537.1 110680530 4195056 complement(3220159..3220407) 1 NC_008209.1 hypothetical protein 3220407 4195056 RD1_3354 Roseobacter denitrificans OCh 114 hypothetical protein YP_683537.1 3220159 R 375451 CDS YP_683538.1 110680531 4195114 complement(3220427..3221833) 1 NC_008209.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3221833 murC 4195114 murC Roseobacter denitrificans OCh 114 UDP-N-acetylmuramate--L-alanine ligase YP_683538.1 3220427 R 375451 CDS YP_683539.1 110680532 4195115 complement(3221830..3222915) 1 NC_008209.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3222915 murG 4195115 murG Roseobacter denitrificans OCh 114 UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_683539.1 3221830 R 375451 CDS YP_683540.1 110680533 4195116 complement(3222927..3224096) 1 NC_008209.1 cell division protein FtsW 3224096 ftsW 4195116 ftsW Roseobacter denitrificans OCh 114 cell division protein FtsW YP_683540.1 3222927 R 375451 CDS YP_683541.1 110680534 4195117 3224229..3225401 1 NC_008209.1 hypothetical protein 3225401 4195117 RD1_3359 Roseobacter denitrificans OCh 114 hypothetical protein YP_683541.1 3224229 D 375451 CDS YP_683542.1 110680535 4195118 complement(3225353..3225451) 1 NC_008209.1 hypothetical protein 3225451 4195118 RD1_3360 Roseobacter denitrificans OCh 114 hypothetical protein YP_683542.1 3225353 R 375451 CDS YP_683543.1 110680536 4195119 complement(3225515..3226909) 1 NC_008209.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3226909 murD 4195119 murD Roseobacter denitrificans OCh 114 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_683543.1 3225515 R 375451 CDS YP_683544.1 110680537 4195120 complement(3226962..3228044) 1 NC_008209.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3228044 mraY 4195120 mraY Roseobacter denitrificans OCh 114 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_683544.1 3226962 R 375451 CDS YP_683545.1 110680538 4195121 complement(3228054..3229484) 1 NC_008209.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 3229484 murF 4195121 murF Roseobacter denitrificans OCh 114 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_683545.1 3228054 R 375451 CDS YP_683546.1 110680539 4195122 complement(3229481..3230962) 1 NC_008209.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3230962 murE 4195122 murE Roseobacter denitrificans OCh 114 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_683546.1 3229481 R 375451 CDS YP_683547.1 110680540 4195123 complement(3230981..3232612) 1 NC_008209.1 penicillin-binding protein 3232612 4195123 RD1_3366 Roseobacter denitrificans OCh 114 penicillin-binding protein YP_683547.1 3230981 R 375451 CDS YP_683548.1 110680541 4195124 complement(3232759..3233118) 1 NC_008209.1 hypothetical protein 3233118 4195124 RD1_3367 Roseobacter denitrificans OCh 114 hypothetical protein YP_683548.1 3232759 R 375451 CDS YP_683549.1 110680542 4195125 complement(3233118..3234110) 1 NC_008209.1 S-adenosyl-methyltransferase MraW 3234110 mraW 4195125 mraW Roseobacter denitrificans OCh 114 S-adenosyl-methyltransferase MraW YP_683549.1 3233118 R 375451 CDS YP_683550.1 110680543 4195126 complement(3234114..3234647) 1 NC_008209.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 3234647 4195126 RD1_3370 Roseobacter denitrificans OCh 114 cell division protein MraZ YP_683550.1 3234114 R 375451 CDS YP_683551.1 110680544 4195127 complement(3235299..3236372) 1 NC_008209.1 Mrp/NBP35 family protein 3236372 4195127 RD1_3371 Roseobacter denitrificans OCh 114 Mrp/NBP35 family protein YP_683551.1 3235299 R 375451 CDS YP_683552.1 110680545 4195128 3236591..3236827 1 NC_008209.1 hypothetical protein 3236827 4195128 RD1_3372 Roseobacter denitrificans OCh 114 hypothetical protein YP_683552.1 3236591 D 375451 CDS YP_683553.1 110680546 4195129 complement(3237115..3237792) 1 NC_008209.1 hypothetical protein 3237792 4195129 RD1_3373 Roseobacter denitrificans OCh 114 hypothetical protein YP_683553.1 3237115 R 375451 CDS YP_683554.1 110680547 4195130 complement(3237906..3240338) 1 NC_008209.1 DNA helicase II 3240338 4195130 RD1_3374 Roseobacter denitrificans OCh 114 DNA helicase II YP_683554.1 3237906 R 375451 CDS YP_683555.1 110680548 4195131 3240444..3241601 1 NC_008209.1 L-lactate dehydrogenase 3241601 lldD 4195131 lldD Roseobacter denitrificans OCh 114 L-lactate dehydrogenase YP_683555.1 3240444 D 375451 CDS YP_683556.1 110680549 4195132 3241747..3245187 1 NC_008209.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3245187 pyc 4195132 pyc Roseobacter denitrificans OCh 114 pyruvate carboxylase YP_683556.1 3241747 D 375451 CDS YP_683557.1 110680550 4195133 3245354..3246187 1 NC_008209.1 hypothetical protein 3246187 4195133 RD1_3377 Roseobacter denitrificans OCh 114 hypothetical protein YP_683557.1 3245354 D 375451 CDS YP_683558.1 110680551 4198798 3247052..3247909 1 NC_008209.1 integrase catalytic subunit 3247909 4198798 RD1_3380 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_683558.1 3247052 D 375451 CDS YP_683559.1 110680552 4198799 complement(3247982..3248407) 1 NC_008209.1 transposase 3248407 4198799 RD1_3381 Roseobacter denitrificans OCh 114 transposase YP_683559.1 3247982 R 375451 CDS YP_683560.1 110680553 4198800 complement(3248702..3250681) 1 NC_008209.1 hypothetical protein 3250681 4198800 RD1_3382 Roseobacter denitrificans OCh 114 hypothetical protein YP_683560.1 3248702 R 375451 CDS YP_683561.1 110680554 4198801 complement(3250681..3251865) 1 NC_008209.1 MotA/TolQ/ExbB proton channel family protein 3251865 4198801 RD1_3383 Roseobacter denitrificans OCh 114 MotA/TolQ/ExbB proton channel family protein YP_683561.1 3250681 R 375451 CDS YP_683562.1 110680555 4198802 complement(3251941..3252471) 1 NC_008209.1 cation transport protein 3252471 chaC 4198802 chaC Roseobacter denitrificans OCh 114 cation transport protein YP_683562.1 3251941 R 375451 CDS YP_683563.1 110680556 4198803 3252486..3253541 1 NC_008209.1 hypothetical protein 3253541 4198803 RD1_3385 Roseobacter denitrificans OCh 114 hypothetical protein YP_683563.1 3252486 D 375451 CDS YP_683564.1 110680557 4198804 complement(3253538..3254317) 1 NC_008209.1 hypothetical protein 3254317 4198804 RD1_3386 Roseobacter denitrificans OCh 114 hypothetical protein YP_683564.1 3253538 R 375451 CDS YP_683565.1 110680558 4198805 complement(3254314..3255234) 1 NC_008209.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase 3255234 tyrC 4198805 tyrC Roseobacter denitrificans OCh 114 cyclohexadienyl dehydrogenase YP_683565.1 3254314 R 375451 CDS YP_683566.1 110680559 4198806 complement(3255231..3256310) 1 NC_008209.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3256310 hisC 4198806 hisC Roseobacter denitrificans OCh 114 histidinol-phosphate aminotransferase YP_683566.1 3255231 R 375451 CDS YP_683567.1 110680560 4198807 3256451..3256564 1 NC_008209.1 hypothetical protein 3256564 4198807 RD1_3389 Roseobacter denitrificans OCh 114 hypothetical protein YP_683567.1 3256451 D 375451 CDS YP_683568.1 110680561 4198808 3256597..3258564 1 NC_008209.1 acyltransferase 3258564 4198808 RD1_3390 Roseobacter denitrificans OCh 114 acyltransferase YP_683568.1 3256597 D 375451 CDS YP_683569.1 110680562 4198809 complement(3258629..3259249) 1 NC_008209.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3259249 rpsD 4198809 rpsD Roseobacter denitrificans OCh 114 30S ribosomal protein S4 YP_683569.1 3258629 R 375451 CDS YP_683570.1 110680563 4198810 complement(3259382..3259954) 1 NC_008209.1 DNA-3-methyladenine glycosylase I 3259954 tag 4198810 tag Roseobacter denitrificans OCh 114 DNA-3-methyladenine glycosylase I YP_683570.1 3259382 R 375451 CDS YP_683571.1 110680564 4198811 3260054..3260926 1 NC_008209.1 EAL domain-containing protein 3260926 4198811 RD1_3393 Roseobacter denitrificans OCh 114 EAL domain-containing protein YP_683571.1 3260054 D 375451 CDS YP_683572.1 110680565 4198812 3261042..3262262 1 NC_008209.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3262262 phbA 4198812 phbA Roseobacter denitrificans OCh 114 acetyl-CoA acetyltransferase YP_683572.1 3261042 D 375451 CDS YP_683573.1 110680566 4198813 3262374..3263096 1 NC_008209.1 acetoacetyl-CoA reductase 3263096 phbB 4198813 phbB Roseobacter denitrificans OCh 114 acetoacetyl-CoA reductase YP_683573.1 3262374 D 375451 CDS YP_683574.1 110680567 4196100 complement(3263175..3263294) 1 NC_008209.1 hypothetical protein 3263294 4196100 RD1_3396 Roseobacter denitrificans OCh 114 hypothetical protein YP_683574.1 3263175 R 375451 CDS YP_683575.1 110680568 4196101 3263415..3264347 1 NC_008209.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3264347 4196101 RD1_3397 Roseobacter denitrificans OCh 114 DNA-binding transcriptional activator GcvA YP_683575.1 3263415 D 375451 CDS YP_683576.1 110680569 4196102 complement(3264403..3264567) 1 NC_008209.1 hypothetical protein 3264567 4196102 RD1_3398 Roseobacter denitrificans OCh 114 hypothetical protein YP_683576.1 3264403 R 375451 CDS YP_683577.1 110680570 4196103 complement(3264679..3265419) 1 NC_008209.1 hypothetical protein 3265419 4196103 RD1_3399 Roseobacter denitrificans OCh 114 hypothetical protein YP_683577.1 3264679 R 375451 CDS YP_683578.1 110680571 4196104 complement(3265416..3265631) 1 NC_008209.1 hypothetical protein 3265631 4196104 RD1_3400 Roseobacter denitrificans OCh 114 hypothetical protein YP_683578.1 3265416 R 375451 CDS YP_683579.1 110680572 4196105 3265688..3266689 1 NC_008209.1 octaprenyl-diphosphate synthase 3266689 ispB 4196105 ispB Roseobacter denitrificans OCh 114 octaprenyl-diphosphate synthase YP_683579.1 3265688 D 375451 CDS YP_683580.1 110680573 4196106 complement(3266682..3267581) 1 NC_008209.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3267581 ispE 4196106 ispE Roseobacter denitrificans OCh 114 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_683580.1 3266682 R 375451 CDS YP_683581.1 110680574 4196107 complement(3267588..3269297) 1 NC_008209.1 hypothetical protein 3269297 4196107 RD1_3403 Roseobacter denitrificans OCh 114 hypothetical protein YP_683581.1 3267588 R 375451 CDS YP_683582.1 110680575 4196108 complement(3269443..3271092) 1 NC_008209.1 electron transfer flavoprotein-ubiquinone oxidoreductase 3271092 4196108 RD1_3404 Roseobacter denitrificans OCh 114 electron transfer flavoprotein-ubiquinone oxidoreductase YP_683582.1 3269443 R 375451 CDS YP_683583.1 110680576 4196109 3271168..3272106 1 NC_008209.1 transcription elongation factor GreA 3272106 greA 4196109 greA Roseobacter denitrificans OCh 114 transcription elongation factor GreA YP_683583.1 3271168 D 375451 CDS YP_683584.1 110680577 4196110 3272121..3273167 1 NC_008209.1 hypothetical protein 3273167 4196110 RD1_3406 Roseobacter denitrificans OCh 114 hypothetical protein YP_683584.1 3272121 D 375451 CDS YP_683585.1 110680578 4196111 complement(3273276..3275345) 1 NC_008209.1 molybdopterin biosynthesis protein 3275345 moeA 4196111 moeA Roseobacter denitrificans OCh 114 molybdopterin biosynthesis protein YP_683585.1 3273276 R 375451 CDS YP_683586.1 110680579 4196112 complement(3275342..3275836) 1 NC_008209.1 molybdopterin-guanine dinucleotide biosynthesis protein B 3275836 mobB 4196112 mobB Roseobacter denitrificans OCh 114 molybdopterin-guanine dinucleotide biosynthesis protein B YP_683586.1 3275342 R 375451 CDS YP_683587.1 110680580 4196113 complement(3275833..3276441) 1 NC_008209.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 3276441 mobA 4196113 mobA Roseobacter denitrificans OCh 114 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_683587.1 3275833 R 375451 CDS YP_683588.1 110680581 4196114 complement(3276438..3277325) 1 NC_008209.1 formate dehydrogenase accessory protein FdhD 3277325 fdhD 4196114 fdhD Roseobacter denitrificans OCh 114 formate dehydrogenase accessory protein FdhD YP_683588.1 3276438 R 375451 CDS YP_683589.1 110680582 4196115 3277376..3278107 1 NC_008209.1 AzlC family protein 3278107 4196115 RD1_3411 Roseobacter denitrificans OCh 114 AzlC family protein YP_683589.1 3277376 D 375451 CDS YP_683590.1 110680583 4196116 3278104..3278430 1 NC_008209.1 hypothetical protein 3278430 4196116 RD1_3412 Roseobacter denitrificans OCh 114 hypothetical protein YP_683590.1 3278104 D 375451 CDS YP_683591.1 110680584 4196117 complement(3278437..3278940) 1 NC_008209.1 lipoprotein 3278940 4196117 RD1_3413 Roseobacter denitrificans OCh 114 lipoprotein YP_683591.1 3278437 R 375451 CDS YP_683592.1 110680585 4196118 complement(3279051..3279185) 1 NC_008209.1 hypothetical protein 3279185 4196118 RD1_3414 Roseobacter denitrificans OCh 114 hypothetical protein YP_683592.1 3279051 R 375451 CDS YP_683593.1 110680586 4196119 complement(3279342..3279803) 1 NC_008209.1 hypothetical protein 3279803 4196119 RD1_3415 Roseobacter denitrificans OCh 114 hypothetical protein YP_683593.1 3279342 R 375451 CDS YP_683594.1 110680587 4194979 complement(3279807..3280853) 1 NC_008209.1 metallo-beta-lactamase family protein 3280853 4194979 RD1_3416 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_683594.1 3279807 R 375451 CDS YP_683595.1 110680588 4194980 complement(3280853..3282547) 1 NC_008209.1 acyl-CoA dehydrogenase 3282547 4194980 RD1_3417 Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_683595.1 3280853 R 375451 CDS YP_683596.1 110680589 4194981 3282668..3283612 1 NC_008209.1 Sua5/YciO/YrdC family protein 3283612 4194981 RD1_3418 Roseobacter denitrificans OCh 114 Sua5/YciO/YrdC family protein YP_683596.1 3282668 D 375451 CDS YP_683597.1 110680590 4194982 complement(3283622..3284176) 1 NC_008209.1 hypothetical protein 3284176 4194982 RD1_3419 Roseobacter denitrificans OCh 114 hypothetical protein YP_683597.1 3283622 R 375451 CDS YP_683598.1 110680591 4194983 3284326..3285132 1 NC_008209.1 hypothetical protein 3285132 4194983 RD1_3420 Roseobacter denitrificans OCh 114 hypothetical protein YP_683598.1 3284326 D 375451 CDS YP_683599.1 110680592 4194984 complement(3285129..3288518) 1 NC_008209.1 acriflavine resistance protein 3288518 4194984 RD1_3421 Roseobacter denitrificans OCh 114 acriflavine resistance protein YP_683599.1 3285129 R 375451 CDS YP_683600.1 110680593 4194985 complement(3288522..3289979) 1 NC_008209.1 RND family efflux transporter MFP subunit 3289979 4194985 RD1_3422 Roseobacter denitrificans OCh 114 RND family efflux transporter MFP subunit YP_683600.1 3288522 R 375451 CDS YP_683601.1 110680594 4194986 complement(3290074..3290616) 1 NC_008209.1 molybdenum cofactor biosynthesis protein B 3290616 moaB 4194986 moaB Roseobacter denitrificans OCh 114 molybdenum cofactor biosynthesis protein B YP_683601.1 3290074 R 375451 CDS YP_683602.1 110680595 4194987 complement(3290618..3291229) 1 NC_008209.1 LysE family protein 3291229 4194987 RD1_3424 Roseobacter denitrificans OCh 114 LysE family protein YP_683602.1 3290618 R 375451 CDS YP_683603.1 110680596 4194988 complement(3291222..3292001) 1 NC_008209.1 uracil-DNA glycosylase 3292001 udgA 4194988 udgA Roseobacter denitrificans OCh 114 uracil-DNA glycosylase YP_683603.1 3291222 R 375451 CDS YP_683604.1 110680597 4194989 3292065..3293063 1 NC_008209.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3293063 pyrB 4194989 pyrB Roseobacter denitrificans OCh 114 aspartate carbamoyltransferase YP_683604.1 3292065 D 375451 CDS YP_683605.1 110680598 4194990 3293060..3293626 1 NC_008209.1 hypothetical protein 3293626 4194990 RD1_3428 Roseobacter denitrificans OCh 114 hypothetical protein YP_683605.1 3293060 D 375451 CDS YP_683606.1 110680599 4194991 3293626..3294906 1 NC_008209.1 dihydroorotase, multifunctional complex type 3294906 pyr 4194991 pyr Roseobacter denitrificans OCh 114 dihydroorotase, multifunctional complex type YP_683606.1 3293626 D 375451 CDS YP_683607.1 110680600 4194992 3294912..3295514 1 NC_008209.1 hypothetical protein 3295514 4194992 RD1_3430 Roseobacter denitrificans OCh 114 hypothetical protein YP_683607.1 3294912 D 375451 CDS YP_683608.1 110680601 4194993 complement(3295789..3296175) 1 NC_008209.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 3296175 ectC 4194993 ectC Roseobacter denitrificans OCh 114 L-ectoine synthase YP_683608.1 3295789 R 375451 CDS YP_683609.1 110680602 4194994 3296252..3297193 1 NC_008209.1 oxidoreductase 3297193 4194994 RD1_3432 Roseobacter denitrificans OCh 114 oxidoreductase YP_683609.1 3296252 D 375451 CDS YP_683610.1 110680603 4194995 3297249..3297896 1 NC_008209.1 hypothetical protein 3297896 4194995 RD1_3433 Roseobacter denitrificans OCh 114 hypothetical protein YP_683610.1 3297249 D 375451 CDS YP_683611.1 110680604 4194996 complement(3297893..3300394) 1 NC_008209.1 dimethylglycine dehydrogenase 3300394 4194996 RD1_3434 Roseobacter denitrificans OCh 114 dimethylglycine dehydrogenase YP_683611.1 3297893 R 375451 CDS YP_683612.1 110680605 4194997 complement(3300510..3301904) 1 NC_008209.1 oxidoreductase 3301904 4194997 RD1_3435 Roseobacter denitrificans OCh 114 oxidoreductase YP_683612.1 3300510 R 375451 CDS YP_683613.1 110680606 4198852 complement(3301935..3303713) 1 NC_008209.1 gamma-glutamyltranspeptidase 3303713 ggt 4198852 ggt Roseobacter denitrificans OCh 114 gamma-glutamyltranspeptidase YP_683613.1 3301935 R 375451 CDS YP_683614.1 110680607 4198853 complement(3303743..3304729) 1 NC_008209.1 glyoxylate reductase 3304729 gyaR 4198853 gyaR Roseobacter denitrificans OCh 114 glyoxylate reductase YP_683614.1 3303743 R 375451 CDS YP_683615.1 110680608 4198854 3304825..3305361 1 NC_008209.1 hypothetical protein 3305361 4198854 RD1_3438 Roseobacter denitrificans OCh 114 hypothetical protein YP_683615.1 3304825 D 375451 CDS YP_683616.1 110680609 4198855 3305534..3306526 1 NC_008209.1 oxidoreductase 3306526 4198855 RD1_3439 Roseobacter denitrificans OCh 114 oxidoreductase YP_683616.1 3305534 D 375451 CDS YP_683617.1 110680610 4198857 complement(3306866..3307465) 1 NC_008209.1 hypothetical protein 3307465 4198857 RD1_3441 Roseobacter denitrificans OCh 114 hypothetical protein YP_683617.1 3306866 R 375451 CDS YP_683618.1 110680611 4198858 complement(3307637..3308197) 1 NC_008209.1 hypothetical protein 3308197 4198858 RD1_3442 Roseobacter denitrificans OCh 114 hypothetical protein YP_683618.1 3307637 R 375451 CDS YP_683619.1 110680612 4198859 complement(3308809..3309126) 1 NC_008209.1 hypothetical protein 3309126 4198859 RD1_3443 Roseobacter denitrificans OCh 114 hypothetical protein YP_683619.1 3308809 R 375451 CDS YP_683620.1 110680613 4198860 3309369..3310757 1 NC_008209.1 transposase 3310757 tnpA 4198860 tnpA Roseobacter denitrificans OCh 114 transposase YP_683620.1 3309369 D 375451 CDS YP_683621.1 110680614 4198861 3311518..3311712 1 NC_008209.1 hypothetical protein 3311712 4198861 RD1_3445 Roseobacter denitrificans OCh 114 hypothetical protein YP_683621.1 3311518 D 375451 CDS YP_683622.1 110680615 4198862 3311712..3312782 1 NC_008209.1 DNA-binding protein 3312782 4198862 RD1_3446 Roseobacter denitrificans OCh 114 DNA-binding protein YP_683622.1 3311712 D 375451 CDS YP_683623.1 110680616 4198863 complement(3313087..3314736) 1 NC_008209.1 UvrD/REP helicase 3314736 4198863 RD1_3447 Roseobacter denitrificans OCh 114 UvrD/REP helicase YP_683623.1 3313087 R 375451 CDS YP_683624.1 110680617 4198864 complement(3314733..3315824) 1 NC_008209.1 hypothetical protein 3315824 4198864 RD1_3448 Roseobacter denitrificans OCh 114 hypothetical protein YP_683624.1 3314733 R 375451 CDS YP_683625.2 162139371 4198865 complement(3316002..3316814) 1 NC_008209.1 integrase catalytic subunit 3316814 4198865 RD1_3449 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_683625.2 3316002 R 375451 CDS YP_683626.1 110680619 4198866 complement(3316850..3317116) 1 NC_008209.1 hypothetical protein 3317116 4198866 RD1_3450 Roseobacter denitrificans OCh 114 hypothetical protein YP_683626.1 3316850 R 375451 CDS YP_683627.1 110680620 4198867 complement(3318714..3319478) 1 NC_008209.1 hypothetical protein 3319478 4198867 RD1_3451 Roseobacter denitrificans OCh 114 hypothetical protein YP_683627.1 3318714 R 375451 CDS YP_683628.1 110680621 4198868 3319831..3320646 1 NC_008209.1 transposase 3320646 4198868 RD1_3452 Roseobacter denitrificans OCh 114 transposase YP_683628.1 3319831 D 375451 CDS YP_683629.1 110680622 4198870 3327714..3328010 1 NC_008209.1 hypothetical protein 3328010 4198870 RD1_3456 Roseobacter denitrificans OCh 114 hypothetical protein YP_683629.1 3327714 D 375451 CDS YP_683630.1 110680623 4195637 3328308..3328784 1 NC_008209.1 transposase 3328784 4195637 RD1_3457 Roseobacter denitrificans OCh 114 transposase YP_683630.1 3328308 D 375451 CDS YP_683631.1 110680624 4195638 3328943..3329038 1 NC_008209.1 hypothetical protein 3329038 4195638 RD1_3458 Roseobacter denitrificans OCh 114 hypothetical protein YP_683631.1 3328943 D 375451 CDS YP_683632.1 110680625 4195639 complement(3329975..3331003) 1 NC_008209.1 calcium binding hemolysin protein 3331003 4195639 RD1_3460 Roseobacter denitrificans OCh 114 calcium binding hemolysin protein YP_683632.1 3329975 R 375451 CDS YP_683633.1 110680626 4195640 complement(3331101..3332438) 1 NC_008209.1 two-component hybrid sensor and regulator 3332438 4195640 RD1_3461 Roseobacter denitrificans OCh 114 two-component hybrid sensor and regulator YP_683633.1 3331101 R 375451 CDS YP_683634.1 110680627 4195641 complement(3332435..3333112) 1 NC_008209.1 two-component response regulator 3333112 4195641 RD1_3462 Roseobacter denitrificans OCh 114 two-component response regulator YP_683634.1 3332435 R 375451 CDS YP_683635.1 110680628 4195643 3334460..3335293 1 NC_008209.1 lipoprotein 3335293 4195643 RD1_3464 Roseobacter denitrificans OCh 114 lipoprotein YP_683635.1 3334460 D 375451 CDS YP_683636.1 110680629 4195644 3335314..3336483 1 NC_008209.1 D-alanyl-D-alanine carboxypeptidase 3336483 dacC 4195644 dacC Roseobacter denitrificans OCh 114 D-alanyl-D-alanine carboxypeptidase YP_683636.1 3335314 D 375451 CDS YP_683637.1 110680630 4195645 3336480..3337118 1 NC_008209.1 thymidylate kinase 3337118 tmk 4195645 tmk Roseobacter denitrificans OCh 114 thymidylate kinase YP_683637.1 3336480 D 375451 CDS YP_683638.1 110680631 4195646 3337115..3338221 1 NC_008209.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3338221 4195646 RD1_3467 Roseobacter denitrificans OCh 114 DNA polymerase III subunit delta' YP_683638.1 3337115 D 375451 CDS YP_683639.1 110680632 4195647 3338255..3339061 1 NC_008209.1 hypothetical protein 3339061 4195647 RD1_3468 Roseobacter denitrificans OCh 114 hypothetical protein YP_683639.1 3338255 D 375451 CDS YP_683640.1 110680633 4195648 3339061..3339861 1 NC_008209.1 hypothetical protein 3339861 4195648 RD1_3469 Roseobacter denitrificans OCh 114 hypothetical protein YP_683640.1 3339061 D 375451 CDS YP_683641.1 110680634 4195649 3339922..3340857 1 NC_008209.1 auxin efflux carrier family protein 3340857 4195649 RD1_3470 Roseobacter denitrificans OCh 114 auxin efflux carrier family protein YP_683641.1 3339922 D 375451 CDS YP_683642.1 110680635 4195650 complement(3340810..3341607) 1 NC_008209.1 Asp/Glu/Hydantoin racemase family protein 3341607 4195650 RD1_3471 Roseobacter denitrificans OCh 114 Asp/Glu/Hydantoin racemase family protein YP_683642.1 3340810 R 375451 CDS YP_683643.1 110680636 4195651 complement(3341604..3342470) 1 NC_008209.1 proline dipeptidase 3342470 pepQ 4195651 pepQ Roseobacter denitrificans OCh 114 proline dipeptidase YP_683643.1 3341604 R 375451 CDS YP_683644.1 110680637 4195652 complement(3342758..3343807) 1 NC_008209.1 hypothetical protein 3343807 4195652 RD1_3473 Roseobacter denitrificans OCh 114 hypothetical protein YP_683644.1 3342758 R 375451 CDS YP_683645.1 110680638 4195653 3343925..3345100 1 NC_008209.1 peptidase, M24 family protein 3345100 4195653 RD1_3474 Roseobacter denitrificans OCh 114 peptidase, M24 family protein YP_683645.1 3343925 D 375451 CDS YP_683646.1 110680639 4195654 3345105..3346100 1 NC_008209.1 hypothetical protein 3346100 4195654 RD1_3475 Roseobacter denitrificans OCh 114 hypothetical protein YP_683646.1 3345105 D 375451 CDS YP_683647.1 110680640 4195343 complement(3346104..3346754) 1 NC_008209.1 phosphoglycolate phosphatase 3346754 gph 4195343 gph Roseobacter denitrificans OCh 114 phosphoglycolate phosphatase YP_683647.1 3346104 R 375451 CDS YP_683648.1 110680641 4195344 complement(3346866..3347225) 1 NC_008209.1 hypothetical protein 3347225 4195344 RD1_3477 Roseobacter denitrificans OCh 114 hypothetical protein YP_683648.1 3346866 R 375451 CDS YP_683649.1 110680642 4195345 complement(3347243..3348169) 1 NC_008209.1 hypothetical protein 3348169 4195345 RD1_3478 Roseobacter denitrificans OCh 114 hypothetical protein YP_683649.1 3347243 R 375451 CDS YP_683650.1 110680643 4195346 complement(3348506..3349552) 1 NC_008209.1 hemin ABC transport protein, permease component 3349552 4195346 RD1_3479 Roseobacter denitrificans OCh 114 hemin ABC transport protein, permease component YP_683650.1 3348506 R 375451 CDS YP_683651.1 110680644 4195347 complement(3349558..3350499) 1 NC_008209.1 iron ABC transporter substrate-binding protein 3350499 4195347 RD1_3480 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_683651.1 3349558 R 375451 CDS YP_683652.1 110680645 4195348 complement(3350512..3351294) 1 NC_008209.1 iron ABC transporter ATP-binding protein 3351294 4195348 RD1_3481 Roseobacter denitrificans OCh 114 iron ABC transporter ATP-binding protein YP_683652.1 3350512 R 375451 CDS YP_683653.1 110680646 4195349 complement(3351291..3351734) 1 NC_008209.1 hypothetical protein 3351734 4195349 RD1_3482 Roseobacter denitrificans OCh 114 hypothetical protein YP_683653.1 3351291 R 375451 CDS YP_683654.1 110680647 4195350 3352157..3352585 1 NC_008209.1 hypothetical protein 3352585 4195350 RD1_3483 Roseobacter denitrificans OCh 114 hypothetical protein YP_683654.1 3352157 D 375451 CDS YP_683655.1 110680648 4195351 3352578..3353813 1 NC_008209.1 multidrug resistance efflux pump 3353813 4195351 RD1_3484 Roseobacter denitrificans OCh 114 multidrug resistance efflux pump YP_683655.1 3352578 D 375451 CDS YP_683656.1 110680649 4195352 complement(3354002..3355054) 1 NC_008209.1 permease 3355054 4195352 RD1_3485 Roseobacter denitrificans OCh 114 permease YP_683656.1 3354002 R 375451 CDS YP_683657.1 110680650 4195353 complement(3355104..3355418) 1 NC_008209.1 ArsR family transcriptional regulator 3355418 arsR 4195353 arsR Roseobacter denitrificans OCh 114 ArsR family transcriptional regulator YP_683657.1 3355104 R 375451 CDS YP_683658.1 110680651 4195354 complement(3355554..3355928) 1 NC_008209.1 hypothetical protein 3355928 4195354 RD1_3488 Roseobacter denitrificans OCh 114 hypothetical protein YP_683658.1 3355554 R 375451 CDS YP_683659.1 110680652 4195355 3355998..3356759 1 NC_008209.1 hydrolase 3356759 4195355 RD1_3489 Roseobacter denitrificans OCh 114 hydrolase YP_683659.1 3355998 D 375451 CDS YP_683660.1 110680653 4195356 3356857..3360216 1 NC_008209.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3360216 carB 4195356 carB Roseobacter denitrificans OCh 114 carbamoyl phosphate synthase large subunit YP_683660.1 3356857 D 375451 CDS YP_683661.1 110680654 4195357 3360369..3360671 1 NC_008209.1 hypothetical protein 3360671 4195357 RD1_3491 Roseobacter denitrificans OCh 114 hypothetical protein YP_683661.1 3360369 D 375451 CDS YP_683662.1 110680655 4195358 3360770..3361894 1 NC_008209.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3361894 fabH 4195358 fabH Roseobacter denitrificans OCh 114 3-oxoacyl-ACP synthase YP_683662.1 3360770 D 375451 CDS YP_683663.1 110680656 4195359 complement(3361913..3362377) 1 NC_008209.1 hypothetical protein 3362377 4195359 RD1_3493 Roseobacter denitrificans OCh 114 hypothetical protein YP_683663.1 3361913 R 375451 CDS YP_683664.1 110680657 4195360 3362618..3363241 1 NC_008209.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3363241 tdk 4195360 tdk Roseobacter denitrificans OCh 114 thymidine kinase YP_683664.1 3362618 D 375451 CDS YP_683665.1 110680658 4195361 complement(3363238..3364191) 1 NC_008209.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein 3364191 4195361 RD1_3495 Roseobacter denitrificans OCh 114 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_683665.1 3363238 R 375451 CDS YP_683666.1 110680659 4195362 complement(3364188..3364526) 1 NC_008209.1 chaperonin CsaA 3364526 csaA 4195362 csaA Roseobacter denitrificans OCh 114 chaperonin CsaA YP_683666.1 3364188 R 375451 CDS YP_683667.1 110680660 4195848 complement(3364519..3365334) 1 NC_008209.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3365334 proC 4195848 proC Roseobacter denitrificans OCh 114 pyrroline-5-carboxylate reductase YP_683667.1 3364519 R 375451 CDS YP_683668.1 110680661 4195849 complement(3365375..3365875) 1 NC_008209.1 hypothetical protein 3365875 4195849 RD1_3499 Roseobacter denitrificans OCh 114 hypothetical protein YP_683668.1 3365375 R 375451 CDS YP_683669.1 110680662 4195850 complement(3366206..3366448) 1 NC_008209.1 hypothetical protein 3366448 4195850 RD1_3500 Roseobacter denitrificans OCh 114 hypothetical protein YP_683669.1 3366206 R 375451 CDS YP_683670.1 110680663 4195851 3366541..3367425 1 NC_008209.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3367425 lgt 4195851 lgt Roseobacter denitrificans OCh 114 prolipoprotein diacylglyceryl transferase YP_683670.1 3366541 D 375451 CDS YP_683671.1 110680664 4195852 3367422..3368480 1 NC_008209.1 hypothetical protein 3368480 4195852 RD1_3502 Roseobacter denitrificans OCh 114 hypothetical protein YP_683671.1 3367422 D 375451 CDS YP_683672.1 110680665 4195853 3368477..3369232 1 NC_008209.1 hypothetical protein 3369232 4195853 RD1_3503 Roseobacter denitrificans OCh 114 hypothetical protein YP_683672.1 3368477 D 375451 CDS YP_683673.1 110680666 4195854 complement(3369367..3369864) 1 NC_008209.1 AsnC family transcriptional regulator 3369864 4195854 RD1_3504 Roseobacter denitrificans OCh 114 AsnC family transcriptional regulator YP_683673.1 3369367 R 375451 CDS YP_683674.1 110680667 4195855 3370054..3371031 1 NC_008209.1 thioredoxin-disulfide reductase 3371031 trxB 4195855 trxB Roseobacter denitrificans OCh 114 thioredoxin-disulfide reductase YP_683674.1 3370054 D 375451 CDS YP_683675.1 110680668 4195856 3371132..3372487 1 NC_008209.1 cytochrome P450 family protein 3372487 4195856 RD1_3506 Roseobacter denitrificans OCh 114 cytochrome P450 family protein YP_683675.1 3371132 D 375451 CDS YP_683676.1 110680669 4195857 complement(3372550..3372774) 1 NC_008209.1 hypothetical protein 3372774 4195857 RD1_3507 Roseobacter denitrificans OCh 114 hypothetical protein YP_683676.1 3372550 R 375451 CDS YP_683677.1 110680670 4195858 complement(3372779..3373192) 1 NC_008209.1 HSP20 family protein 3373192 hspH 4195858 hspH Roseobacter denitrificans OCh 114 HSP20 family protein YP_683677.1 3372779 R 375451 CDS YP_683678.1 110680671 4195859 3373658..3374146 1 NC_008209.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 3374146 purE 4195859 purE Roseobacter denitrificans OCh 114 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_683678.1 3373658 D 375451 CDS YP_683679.1 110680672 4195860 3374139..3375206 1 NC_008209.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3375206 purK 4195860 purK Roseobacter denitrificans OCh 114 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_683679.1 3374139 D 375451 CDS YP_683680.1 110680673 4195861 complement(3375211..3376275) 1 NC_008209.1 phosphonate metabolism domain-containing protein 3376275 4195861 RD1_3512 Roseobacter denitrificans OCh 114 phosphonate metabolism domain-containing protein YP_683680.1 3375211 R 375451 CDS YP_683681.1 110680674 4195862 complement(3376343..3377074) 1 NC_008209.1 lipase 3377074 4195862 RD1_3513 Roseobacter denitrificans OCh 114 lipase YP_683681.1 3376343 R 375451 CDS YP_683682.1 110680675 4195863 3377213..3377668 1 NC_008209.1 hydrolase 3377668 4195863 RD1_3514 Roseobacter denitrificans OCh 114 hydrolase YP_683682.1 3377213 D 375451 CDS YP_683683.1 110680676 4195864 complement(3377634..3378482) 1 NC_008209.1 hypothetical protein 3378482 4195864 RD1_3515 Roseobacter denitrificans OCh 114 hypothetical protein YP_683683.1 3377634 R 375451 CDS YP_683684.1 110680677 4195865 complement(3378695..3380338) 1 NC_008209.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 3380338 groEL 4195865 groEL Roseobacter denitrificans OCh 114 molecular chaperone GroEL YP_683684.1 3378695 R 375451 CDS YP_683685.1 110680678 4195866 complement(3380394..3380705) 1 NC_008209.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3380705 groES 4195866 groES Roseobacter denitrificans OCh 114 co-chaperonin GroES YP_683685.1 3380394 R 375451 CDS YP_683686.1 110680679 4195887 complement(3380887..3381555) 1 NC_008209.1 hypothetical protein 3381555 4195887 RD1_3518 Roseobacter denitrificans OCh 114 hypothetical protein YP_683686.1 3380887 R 375451 CDS YP_683687.1 110680680 4195888 3381824..3382537 1 NC_008209.1 hypothetical protein 3382537 4195888 RD1_3519 Roseobacter denitrificans OCh 114 hypothetical protein YP_683687.1 3381824 D 375451 CDS YP_683688.1 110680681 4195889 3382700..3383620 1 NC_008209.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 3383620 ppaC 4195889 ppaC Roseobacter denitrificans OCh 114 manganese-dependent inorganic pyrophosphatase YP_683688.1 3382700 D 375451 CDS YP_683689.1 110680682 4195890 3383709..3384581 1 NC_008209.1 hypothetical protein 3384581 4195890 RD1_3521 Roseobacter denitrificans OCh 114 hypothetical protein YP_683689.1 3383709 D 375451 CDS YP_683690.1 110680683 4195891 3384671..3385114 1 NC_008209.1 MaoC-like protein 3385114 4195891 RD1_3522 Roseobacter denitrificans OCh 114 MaoC-like protein YP_683690.1 3384671 D 375451 CDS YP_683691.1 110680684 4195892 3385175..3386107 1 NC_008209.1 riboflavin biosynthesis protein RibF 3386107 ribF 4195892 ribF Roseobacter denitrificans OCh 114 riboflavin biosynthesis protein RibF YP_683691.1 3385175 D 375451 CDS YP_683692.1 110680685 4195893 3386104..3386574 1 NC_008209.1 hypothetical protein 3386574 4195893 RD1_3524 Roseobacter denitrificans OCh 114 hypothetical protein YP_683692.1 3386104 D 375451 CDS YP_683693.1 110680686 4195894 3386574..3387611 1 NC_008209.1 low-specificity L-threonine aldolase 3387611 ltaE 4195894 ltaE Roseobacter denitrificans OCh 114 low-specificity L-threonine aldolase YP_683693.1 3386574 D 375451 CDS YP_683694.1 110680687 4195895 complement(3387597..3388379) 1 NC_008209.1 alpha/beta hydrolase 3388379 4195895 RD1_3526 Roseobacter denitrificans OCh 114 alpha/beta hydrolase YP_683694.1 3387597 R 375451 CDS YP_683695.1 110680688 4195896 complement(3388376..3388975) 1 NC_008209.1 hypothetical protein 3388975 4195896 RD1_3527 Roseobacter denitrificans OCh 114 hypothetical protein YP_683695.1 3388376 R 375451 CDS YP_683696.1 110680689 4195897 3389090..3390109 1 NC_008209.1 ribose-phosphate pyrophosphokinase 3390109 4195897 RD1_3528 Roseobacter denitrificans OCh 114 ribose-phosphate pyrophosphokinase YP_683696.1 3389090 D 375451 CDS YP_683697.1 110680690 4195898 complement(3390131..3390706) 1 NC_008209.1 lipoprotein 3390706 4195898 RD1_3529 Roseobacter denitrificans OCh 114 lipoprotein YP_683697.1 3390131 R 375451 CDS YP_683698.1 110680691 4195899 complement(3391589..3394030) 1 NC_008209.1 chemotaxis protein 3394030 4195899 RD1_3530 Roseobacter denitrificans OCh 114 chemotaxis protein YP_683698.1 3391589 R 375451 CDS YP_683699.1 110680692 4195900 complement(3394440..3394856) 1 NC_008209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 3394856 atpC 4195900 atpC Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit epsilon YP_683699.1 3394440 R 375451 CDS YP_683700.1 110680693 4195901 complement(3394869..3396293) 1 NC_008209.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 3396293 atpD 4195901 atpD Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit beta YP_683700.1 3394869 R 375451 CDS YP_683701.1 110680694 4195902 complement(3396313..3397188) 1 NC_008209.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 3397188 atpG 4195902 atpG Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit gamma YP_683701.1 3396313 R 375451 CDS YP_683702.1 110680695 4195903 complement(3397204..3398742) 1 NC_008209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 3398742 atpA 4195903 atpA Roseobacter denitrificans OCh 114 ATP synthase F0F1 subunit alpha YP_683702.1 3397204 R 375451 CDS YP_683703.1 110680696 4195904 complement(3398743..3399303) 1 NC_008209.1 ATP synthase F1 subunit delta 3399303 atpH 4195904 atpH Roseobacter denitrificans OCh 114 ATP synthase F1 subunit delta YP_683703.1 3398743 R 375451 CDS YP_683704.1 110680697 4195905 complement(3399476..3399580) 1 NC_008209.1 hypothetical protein 3399580 4195905 RD1_3537 Roseobacter denitrificans OCh 114 hypothetical protein YP_683704.1 3399476 R 375451 CDS YP_683705.1 110680698 4195906 complement(3399603..3400337) 1 NC_008209.1 hypothetical protein 3400337 4195906 RD1_3538 Roseobacter denitrificans OCh 114 hypothetical protein YP_683705.1 3399603 R 375451 CDS YP_683706.1 110680699 4196229 3400401..3401168 1 NC_008209.1 hydroxyacylglutathione hydrolase 3401168 gloB 4196229 gloB Roseobacter denitrificans OCh 114 hydroxyacylglutathione hydrolase YP_683706.1 3400401 D 375451 CDS YP_683707.1 110680700 4196230 3401344..3403665 1 NC_008209.1 ATP-dependent Clp protease, ATP-binding subunit ClpA 3403665 clpA 4196230 clpA Roseobacter denitrificans OCh 114 ATP-dependent Clp protease, ATP-binding subunit ClpA YP_683707.1 3401344 D 375451 CDS YP_683708.1 110680701 4196231 complement(3404531..3404686) 1 NC_008209.1 hypothetical protein 3404686 4196231 RD1_3541 Roseobacter denitrificans OCh 114 hypothetical protein YP_683708.1 3404531 R 375451 CDS YP_683709.1 110680702 4196232 3405175..3410487 1 NC_008209.1 ATP-dependent DNA helicase 3410487 4196232 RD1_3542 Roseobacter denitrificans OCh 114 ATP-dependent DNA helicase YP_683709.1 3405175 D 375451 CDS YP_683710.1 110680703 4196233 3410974..3411129 1 NC_008209.1 light-harvesting protein B-800/850 subunit beta 3411129 pucB 4196233 pucB Roseobacter denitrificans OCh 114 light-harvesting protein B-800/850 subunit beta YP_683710.1 3410974 D 375451 CDS YP_683711.1 110680704 4196234 3411142..3411498 1 NC_008209.1 light-harvesting protein B-800/850 subunit alpha 3411498 pucA 4196234 pucA Roseobacter denitrificans OCh 114 light-harvesting protein B-800/850 subunit alpha YP_683711.1 3411142 D 375451 CDS YP_683712.1 110680705 4196235 3411599..3413056 1 NC_008209.1 PucC protein 3413056 pucC 4196235 pucC Roseobacter denitrificans OCh 114 PucC protein YP_683712.1 3411599 D 375451 CDS YP_683713.1 110680706 4196236 3413053..3414102 1 NC_008209.1 hypothetical protein 3414102 4196236 RD1_3546 Roseobacter denitrificans OCh 114 hypothetical protein YP_683713.1 3413053 D 375451 CDS YP_683714.1 110680707 4196237 complement(3414211..3414600) 1 NC_008209.1 potassium efflux system protein 3414600 4196237 RD1_3547 Roseobacter denitrificans OCh 114 potassium efflux system protein YP_683714.1 3414211 R 375451 CDS YP_683715.1 110680708 4196238 complement(3414597..3414884) 1 NC_008209.1 pH adaptation potassium efflux system protein 3414884 phaF 4196238 phaF Roseobacter denitrificans OCh 114 pH adaptation potassium efflux system protein YP_683715.1 3414597 R 375451 CDS YP_683716.1 110680709 4196239 complement(3414881..3415381) 1 NC_008209.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 3415381 phaE 4196239 phaE Roseobacter denitrificans OCh 114 monovalent cation/H+ antiporter subunit E YP_683716.1 3414881 R 375451 CDS YP_683717.1 110680710 4196240 complement(3415383..3416924) 1 NC_008209.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 3416924 phaD 4196240 phaD Roseobacter denitrificans OCh 114 monovalent cation/H+ antiporter subunit D YP_683717.1 3415383 R 375451 CDS YP_683718.1 110680711 4196241 complement(3416921..3417283) 1 NC_008209.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 3417283 phaC 4196241 phaC Roseobacter denitrificans OCh 114 monovalent cation/H+ antiporter subunit C YP_683718.1 3416921 R 375451 CDS YP_683719.1 110680712 4196242 complement(3417285..3420158) 1 NC_008209.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 3420158 phaA 4196242 phaA Roseobacter denitrificans OCh 114 monovalent cation/H+ antiporter subunit A YP_683719.1 3417285 R 375451 CDS YP_683720.1 110680713 4196243 3420368..3420853 1 NC_008209.1 hypothetical protein 3420853 4196243 RD1_3554 Roseobacter denitrificans OCh 114 hypothetical protein YP_683720.1 3420368 D 375451 CDS YP_683721.1 110680714 4196244 complement(3420371..3420712) 1 NC_008209.1 hypothetical protein 3420712 4196244 RD1_3553 Roseobacter denitrificans OCh 114 hypothetical protein YP_683721.1 3420371 R 375451 CDS YP_683722.1 110680715 4196245 complement(3420709..3420948) 1 NC_008209.1 hypothetical protein 3420948 4196245 RD1_3555 Roseobacter denitrificans OCh 114 hypothetical protein YP_683722.1 3420709 R 375451 CDS YP_683723.1 110680716 4196246 3421094..3421681 1 NC_008209.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3421681 hisB 4196246 hisB Roseobacter denitrificans OCh 114 imidazoleglycerol-phosphate dehydratase YP_683723.1 3421094 D 375451 CDS YP_683724.1 110680717 4196247 3421684..3422322 1 NC_008209.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3422322 hisH 4196247 hisH Roseobacter denitrificans OCh 114 imidazole glycerol phosphate synthase subunit HisH YP_683724.1 3421684 D 375451 CDS YP_683725.1 110680718 4195789 complement(3422345..3423136) 1 NC_008209.1 hypothetical protein 3423136 4195789 RD1_3558 Roseobacter denitrificans OCh 114 hypothetical protein YP_683725.1 3422345 R 375451 CDS YP_683726.1 110680719 4195790 complement(3423224..3423613) 1 NC_008209.1 hypothetical protein 3423613 4195790 RD1_3559 Roseobacter denitrificans OCh 114 hypothetical protein YP_683726.1 3423224 R 375451 CDS YP_683727.1 110680720 4195791 3423770..3424489 1 NC_008209.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3424489 hisA 4195791 hisA Roseobacter denitrificans OCh 114 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_683727.1 3423770 D 375451 CDS YP_683728.1 110680721 4195792 3424566..3425327 1 NC_008209.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3425327 hisF 4195792 hisF Roseobacter denitrificans OCh 114 imidazole glycerol phosphate synthase subunit HisF YP_683728.1 3424566 D 375451 CDS YP_683729.1 110680722 4195793 3425324..3425641 1 NC_008209.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 3425641 hisE 4195793 hisE Roseobacter denitrificans OCh 114 phosphoribosyl-ATP pyrophosphatase YP_683729.1 3425324 D 375451 CDS YP_683730.1 110680723 4195794 complement(3425651..3426121) 1 NC_008209.1 CoA-binding domain-containing protein 3426121 4195794 RD1_3563 Roseobacter denitrificans OCh 114 CoA-binding domain-containing protein YP_683730.1 3425651 R 375451 CDS YP_683731.1 110680724 4195795 complement(3426331..3426645) 1 NC_008209.1 hypothetical protein 3426645 4195795 RD1_3564 Roseobacter denitrificans OCh 114 hypothetical protein YP_683731.1 3426331 R 375451 CDS YP_683732.1 110680725 4195796 complement(3426673..3427446) 1 NC_008209.1 RNA methyltransferase 3427446 4195796 RD1_3565 Roseobacter denitrificans OCh 114 RNA methyltransferase YP_683732.1 3426673 R 375451 CDS YP_683733.1 110680726 4195798 complement(3427711..3429366) 1 NC_008209.1 Na+/Pi-cotransporter 3429366 4195798 RD1_3567 Roseobacter denitrificans OCh 114 Na+/Pi-cotransporter YP_683733.1 3427711 R 375451 CDS YP_683734.1 110680727 4195799 complement(3429382..3430185) 1 NC_008209.1 Ser/Thr protein phosphatase family protein 3430185 4195799 RD1_3568 Roseobacter denitrificans OCh 114 Ser/Thr protein phosphatase family protein YP_683734.1 3429382 R 375451 CDS YP_683735.1 110680728 4195800 complement(3430182..3430991) 1 NC_008209.1 inner membrane component of binding-protein-dependent transport system 3430991 4195800 RD1_3569 Roseobacter denitrificans OCh 114 inner membrane component of binding-protein-dependent transport system YP_683735.1 3430182 R 375451 CDS YP_683736.1 110680729 4195801 complement(3430988..3431881) 1 NC_008209.1 glycerol-3-phosphate ABC transporter permease 3431881 4195801 RD1_3570 Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter permease YP_683736.1 3430988 R 375451 CDS YP_683737.1 110680730 4195802 complement(3431946..3433214) 1 NC_008209.1 glycerol-3-phosphate ABC transporter substrate-binding protein 3433214 4195802 RD1_3571 Roseobacter denitrificans OCh 114 glycerol-3-phosphate ABC transporter substrate-binding protein YP_683737.1 3431946 R 375451 CDS YP_683738.1 110680731 4195803 complement(3433262..3434281) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3434281 4195803 RD1_3572 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_683738.1 3433262 R 375451 CDS YP_683739.1 110680732 4195804 complement(3434278..3435057) 1 NC_008209.1 DeoR family transcriptional regulator 3435057 deoR 4195804 deoR Roseobacter denitrificans OCh 114 DeoR family transcriptional regulator YP_683739.1 3434278 R 375451 CDS YP_683740.1 110680733 4195805 complement(3435219..3435539) 1 NC_008209.1 ABC transporter substrate-binding protein 3435539 4195805 RD1_3574 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_683740.1 3435219 R 375451 CDS YP_683741.1 110680734 4195806 complement(3435619..3435897) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3435897 4195806 RD1_3575 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_683741.1 3435619 R 375451 CDS YP_683742.1 110680735 4195807 complement(3435912..3436172) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3436172 4195807 RD1_3576 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_683742.1 3435912 R 375451 CDS YP_683743.1 110680736 4195153 complement(3436733..3439117) 1 NC_008209.1 sensory box histidine kinase/response regulator 3439117 4195153 RD1_3577 Roseobacter denitrificans OCh 114 sensory box histidine kinase/response regulator YP_683743.1 3436733 R 375451 CDS YP_683744.1 110680737 4195154 complement(3439235..3439729) 1 NC_008209.1 hypothetical protein 3439729 4195154 RD1_3578 Roseobacter denitrificans OCh 114 hypothetical protein YP_683744.1 3439235 R 375451 CDS YP_683745.1 110680738 4195155 3439994..3440608 1 NC_008209.1 LuxR family DNA-binding response regulator 3440608 4195155 RD1_3579 Roseobacter denitrificans OCh 114 LuxR family DNA-binding response regulator YP_683745.1 3439994 D 375451 CDS YP_683746.1 110680739 4195156 3440772..3441335 1 NC_008209.1 hypothetical protein 3441335 4195156 RD1_3580 Roseobacter denitrificans OCh 114 hypothetical protein YP_683746.1 3440772 D 375451 CDS YP_683747.1 110680740 4195157 3441840..3444134 1 NC_008209.1 methyl-accepting chemotaxis protein McpA 3444134 mcpA 4195157 mcpA Roseobacter denitrificans OCh 114 methyl-accepting chemotaxis protein McpA YP_683747.1 3441840 D 375451 CDS YP_683748.1 110680741 4195158 3444591..3445553 1 NC_008209.1 AraC family transcriptional regulator 3445553 4195158 RD1_3583 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_683748.1 3444591 D 375451 CDS YP_683749.1 110680742 4195159 3445641..3447668 1 NC_008209.1 hydantoin utilization protein A 3447668 hyuA 4195159 hyuA Roseobacter denitrificans OCh 114 hydantoin utilization protein A YP_683749.1 3445641 D 375451 CDS YP_683750.1 110680743 4195160 3447673..3449628 1 NC_008209.1 hydantoin utilization protein B 3449628 4195160 RD1_3585 Roseobacter denitrificans OCh 114 hydantoin utilization protein B YP_683750.1 3447673 D 375451 CDS YP_683751.1 110680744 4195161 complement(3449631..3449741) 1 NC_008209.1 hypothetical protein 3449741 4195161 RD1_3586 Roseobacter denitrificans OCh 114 hypothetical protein YP_683751.1 3449631 R 375451 CDS YP_683752.1 110680745 4195162 3449735..3450463 1 NC_008209.1 branched-chain amino acid ABC transporter ATP-binding protein 3450463 4195162 RD1_3587 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter ATP-binding protein YP_683752.1 3449735 D 375451 CDS YP_683753.1 110680746 4195163 3450463..3451197 1 NC_008209.1 branched chain amino acid ABC transporter ATP-binding protein 3451197 4195163 RD1_3588 Roseobacter denitrificans OCh 114 branched chain amino acid ABC transporter ATP-binding protein YP_683753.1 3450463 D 375451 CDS YP_683754.1 110680747 4195164 3451194..3452108 1 NC_008209.1 branched-chain amino acid ABC transporter permease 3452108 4195164 RD1_3589 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_683754.1 3451194 D 375451 CDS YP_683755.1 110680748 4195165 3452112..3453140 1 NC_008209.1 branched-chain amino acid ABC transporter permease 3453140 4195165 RD1_3590 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_683755.1 3452112 D 375451 CDS YP_683756.1 110680749 4195166 3453181..3454350 1 NC_008209.1 branched-chain amino acid ABC transporter substrate-binding protein 3454350 4195166 RD1_3591 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter substrate-binding protein YP_683756.1 3453181 D 375451 CDS YP_683757.1 110680750 4195167 complement(3454820..3455929) 1 NC_008209.1 hypothetical protein 3455929 4195167 RD1_3592 Roseobacter denitrificans OCh 114 hypothetical protein YP_683757.1 3454820 R 375451 CDS YP_683758.1 110680751 4195168 complement(3455875..3456951) 1 NC_008209.1 multidrug resistance efflux pump 3456951 4195168 RD1_3593 Roseobacter denitrificans OCh 114 multidrug resistance efflux pump YP_683758.1 3455875 R 375451 CDS YP_683759.1 110680752 4195169 complement(3457518..3458432) 1 NC_008209.1 two-component response regulator 3458432 4195169 RD1_3594 Roseobacter denitrificans OCh 114 two-component response regulator YP_683759.1 3457518 R 375451 CDS YP_683760.1 110680753 4195170 complement(3458416..3461763) 1 NC_008209.1 two-component hybrid sensor and regulator 3461763 4195170 RD1_3595 Roseobacter denitrificans OCh 114 two-component hybrid sensor and regulator YP_683760.1 3458416 R 375451 CDS YP_683761.1 110680754 4195171 3461997..3463268 1 NC_008209.1 ABC transporter substrate-binding protein 3463268 4195171 RD1_3596 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_683761.1 3461997 D 375451 CDS YP_683762.1 110680755 4195075 3463340..3464266 1 NC_008209.1 branched-chain amino acid transport system permease component 3464266 4195075 RD1_3598 Roseobacter denitrificans OCh 114 branched-chain amino acid transport system permease component YP_683762.1 3463340 D 375451 CDS YP_683763.1 110680756 4195076 3464279..3465412 1 NC_008209.1 branched-chain amino acid ABC transporter permease 3465412 4195076 RD1_3599 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transporter permease YP_683763.1 3464279 D 375451 CDS YP_683764.1 110680757 4195077 3465424..3466179 1 NC_008209.1 branched-chain amino acid ABC transport, ATP-binding protein 3466179 4195077 RD1_3600 Roseobacter denitrificans OCh 114 branched-chain amino acid ABC transport, ATP-binding protein YP_683764.1 3465424 D 375451 CDS YP_683765.1 110680758 4195078 3466191..3466880 1 NC_008209.1 ABC transporter ATP-binding protein 3466880 4195078 RD1_3601 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_683765.1 3466191 D 375451 CDS YP_683766.1 110680759 4195079 3466905..3468134 1 NC_008209.1 amidase 3468134 fmdA 4195079 fmdA Roseobacter denitrificans OCh 114 amidase YP_683766.1 3466905 D 375451 CDS YP_683767.1 110680760 4195080 3468200..3468529 1 NC_008209.1 hypothetical protein 3468529 4195080 RD1_3603 Roseobacter denitrificans OCh 114 hypothetical protein YP_683767.1 3468200 D 375451 CDS YP_683768.1 110680761 4195081 complement(3468607..3468795) 1 NC_008209.1 hypothetical protein 3468795 4195081 RD1_3604 Roseobacter denitrificans OCh 114 hypothetical protein YP_683768.1 3468607 R 375451 CDS YP_683769.1 110680762 4195082 3469096..3469686 1 NC_008209.1 hypothetical protein 3469686 4195082 RD1_3605 Roseobacter denitrificans OCh 114 hypothetical protein YP_683769.1 3469096 D 375451 CDS YP_683770.1 110680763 4195083 3469686..3470480 1 NC_008209.1 hypothetical protein 3470480 4195083 RD1_3606 Roseobacter denitrificans OCh 114 hypothetical protein YP_683770.1 3469686 D 375451 CDS YP_683771.1 110680764 4195084 complement(3470580..3471884) 1 NC_008209.1 C4-dicarboxylate transport system, permease 3471884 4195084 RD1_3607 Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, permease YP_683771.1 3470580 R 375451 CDS YP_683772.1 110680765 4195085 complement(3471871..3472365) 1 NC_008209.1 TRAP transporter DctQ-like membrane protein 3472365 4195085 RD1_3608 Roseobacter denitrificans OCh 114 TRAP transporter DctQ-like membrane protein YP_683772.1 3471871 R 375451 CDS YP_683773.1 110680766 4195086 complement(3472433..3473407) 1 NC_008209.1 C4-dicarboxylate transport system, substrate-binding protein 3473407 4195086 RD1_3609 Roseobacter denitrificans OCh 114 C4-dicarboxylate transport system, substrate-binding protein YP_683773.1 3472433 R 375451 CDS YP_683774.1 110680767 4195087 3473809..3474582 1 NC_008209.1 hydroxyethylthiazole kinase 3474582 thiM 4195087 thiM Roseobacter denitrificans OCh 114 hydroxyethylthiazole kinase YP_683774.1 3473809 D 375451 CDS YP_683775.1 110680768 4195088 3474579..3475223 1 NC_008209.1 bifunctional ThiED protein 3475223 thiDE 4195088 thiDE Roseobacter denitrificans OCh 114 bifunctional ThiED protein YP_683775.1 3474579 D 375451 CDS YP_683776.1 110680769 4195089 3475220..3476029 1 NC_008209.1 phosphomethylpyrimidine kinase 3476029 thiD 4195089 thiD Roseobacter denitrificans OCh 114 phosphomethylpyrimidine kinase YP_683776.1 3475220 D 375451 CDS YP_683777.1 110680770 4195090 3476083..3476769 1 NC_008209.1 transcriptional regulator 3476769 tenA 4195090 tenA Roseobacter denitrificans OCh 114 transcriptional regulator YP_683777.1 3476083 D 375451 CDS YP_683778.1 110680771 4195091 complement(3476844..3477809) 1 NC_008209.1 glycerone kinase 3477809 4195091 RD1_3614 Roseobacter denitrificans OCh 114 glycerone kinase YP_683778.1 3476844 R 375451 CDS YP_683779.1 110680772 4195092 3477980..3479311 1 NC_008209.1 hypothetical protein 3479311 4195092 RD1_3615 Roseobacter denitrificans OCh 114 hypothetical protein YP_683779.1 3477980 D 375451 CDS YP_683780.1 110680773 4195093 3479333..3480058 1 NC_008209.1 short chain dehydrogenase/reductase family oxidoreductase 3480058 4195093 RD1_3616 Roseobacter denitrificans OCh 114 short chain dehydrogenase/reductase family oxidoreductase YP_683780.1 3479333 D 375451 CDS YP_683781.1 110680774 4195094 3480139..3481680 1 NC_008209.1 xylulose kinase 3481680 xylB 4195094 xylB Roseobacter denitrificans OCh 114 xylulose kinase YP_683781.1 3480139 D 375451 CDS YP_683782.1 110680775 4198891 3481677..3482582 1 NC_008209.1 hydrolase 3482582 4198891 RD1_3618 Roseobacter denitrificans OCh 114 hydrolase YP_683782.1 3481677 D 375451 CDS YP_683783.1 110680776 4198892 3482918..3483841 1 NC_008209.1 ABC transporter permease 3483841 4198892 RD1_3619 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683783.1 3482918 D 375451 CDS YP_683784.1 110680777 4198893 3483838..3484731 1 NC_008209.1 sugar ABC transporter permease 3484731 4198893 RD1_3620 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683784.1 3483838 D 375451 CDS YP_683785.1 110680778 4198894 3484894..3486315 1 NC_008209.1 ABC transporter substrate-binding protein 3486315 4198894 RD1_3621 Roseobacter denitrificans OCh 114 ABC transporter substrate-binding protein YP_683785.1 3484894 D 375451 CDS YP_683786.1 110680779 4198895 3486425..3487504 1 NC_008209.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein 3487504 4198895 RD1_3622 Roseobacter denitrificans OCh 114 sn-glycerol-3-phosphate ABC transporter ATP-binding protein YP_683786.1 3486425 D 375451 CDS YP_683787.1 110680780 4198896 3487525..3488559 1 NC_008209.1 D-xylulose reductase 3488559 xdh 4198896 xdh Roseobacter denitrificans OCh 114 D-xylulose reductase YP_683787.1 3487525 D 375451 CDS YP_683788.1 110680781 4198897 complement(3488673..3489128) 1 NC_008209.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 3489128 rpiB 4198897 rpiB Roseobacter denitrificans OCh 114 ribose-5-phosphate isomerase B YP_683788.1 3488673 R 375451 CDS YP_683789.1 110680782 4198898 complement(3489125..3489901) 1 NC_008209.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3489901 tpiA 4198898 tpiA Roseobacter denitrificans OCh 114 triosephosphate isomerase YP_683789.1 3489125 R 375451 CDS YP_683790.1 110680783 4198899 complement(3489935..3490867) 1 NC_008209.1 hypothetical protein 3490867 4198899 RD1_3626 Roseobacter denitrificans OCh 114 hypothetical protein YP_683790.1 3489935 R 375451 CDS YP_683791.1 110680784 4198900 complement(3490867..3491697) 1 NC_008209.1 hydrolase 3491697 4198900 RD1_3628 Roseobacter denitrificans OCh 114 hydrolase YP_683791.1 3490867 R 375451 CDS YP_683792.1 110680785 4198901 complement(3491694..3492932) 1 NC_008209.1 xylulose kinase 3492932 xylB 4198901 xylB Roseobacter denitrificans OCh 114 xylulose kinase YP_683792.1 3491694 R 375451 CDS YP_683793.1 110680786 4198902 complement(3492925..3493902) 1 NC_008209.1 hypothetical protein 3493902 4198902 RD1_3630 Roseobacter denitrificans OCh 114 hypothetical protein YP_683793.1 3492925 R 375451 CDS YP_683794.1 110680787 4198903 complement(3493899..3495398) 1 NC_008209.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3495398 glpD 4198903 glpD Roseobacter denitrificans OCh 114 glycerol-3-phosphate dehydrogenase YP_683794.1 3493899 R 375451 CDS YP_683795.1 110680788 4198904 complement(3495395..3496048) 1 NC_008209.1 L-fuculose phosphate aldolase 3496048 fucA 4198904 fucA Roseobacter denitrificans OCh 114 L-fuculose phosphate aldolase YP_683795.1 3495395 R 375451 CDS YP_683796.1 110680789 4198905 complement(3496053..3497093) 1 NC_008209.1 D-3-phosphoglycerate dehydrogenase 3497093 serA 4198905 serA Roseobacter denitrificans OCh 114 D-3-phosphoglycerate dehydrogenase YP_683796.1 3496053 R 375451 CDS YP_683797.1 110680790 4198906 complement(3497086..3498654) 1 NC_008209.1 FGGY family of carbohydrate kinases 3498654 4198906 RD1_3634 Roseobacter denitrificans OCh 114 FGGY family of carbohydrate kinases YP_683797.1 3497086 R 375451 CDS YP_683798.1 110680791 4198907 complement(3498651..3499775) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3499775 4198907 RD1_3635 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_683798.1 3498651 R 375451 CDS YP_683799.1 110680792 4198908 complement(3499772..3500881) 1 NC_008209.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein 3500881 ugpC 4198908 ugpC Roseobacter denitrificans OCh 114 sn-glycerol-3-phosphate ABC transporter ATP-binding protein YP_683799.1 3499772 R 375451 CDS YP_683800.1 110680793 4198909 complement(3500885..3501742) 1 NC_008209.1 sugar ABC transporter permease 3501742 4198909 RD1_3638 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683800.1 3500885 R 375451 CDS YP_683801.1 110680794 4195481 complement(3501753..3502676) 1 NC_008209.1 ABC transporter permease 3502676 4195481 RD1_3639 Roseobacter denitrificans OCh 114 ABC transporter permease YP_683801.1 3501753 R 375451 CDS YP_683802.1 110680795 4195482 complement(3502793..3504238) 1 NC_008209.1 sugar ABC transporter substrate-binding 3504238 4195482 RD1_3640 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding YP_683802.1 3502793 R 375451 CDS YP_683803.1 110680796 4195483 complement(3504269..3505225) 1 NC_008209.1 ery operon repressor 3505225 eryD 4195483 eryD Roseobacter denitrificans OCh 114 ery operon repressor YP_683803.1 3504269 R 375451 CDS YP_683804.1 110680797 4195484 3505560..3506342 1 NC_008209.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 3506342 4195484 RD1_3642 Roseobacter denitrificans OCh 114 L-aspartate dehydrogenase YP_683804.1 3505560 D 375451 CDS YP_683805.1 110680798 4195485 complement(3506535..3507743) 1 NC_008209.1 kynureninase 3507743 kynU 4195485 kynU Roseobacter denitrificans OCh 114 kynureninase YP_683805.1 3506535 R 375451 CDS YP_683806.1 110680799 4195486 complement(3507993..3509618) 1 NC_008209.1 sulfatase family protein 3509618 4195486 RD1_3645 Roseobacter denitrificans OCh 114 sulfatase family protein YP_683806.1 3507993 R 375451 CDS YP_683807.1 110680800 4195487 complement(3509692..3510723) 1 NC_008209.1 TRAP-type transporter periplasmic component 3510723 4195487 RD1_3647 Roseobacter denitrificans OCh 114 TRAP-type transporter periplasmic component YP_683807.1 3509692 R 375451 CDS YP_683808.1 110680801 4195488 complement(3510744..3512603) 1 NC_008209.1 hypothetical protein 3512603 4195488 RD1_3648 Roseobacter denitrificans OCh 114 hypothetical protein YP_683808.1 3510744 R 375451 CDS YP_683809.1 110680802 4195489 3512727..3513515 1 NC_008209.1 transcriptional regulator 3513515 4195489 RD1_3649 Roseobacter denitrificans OCh 114 transcriptional regulator YP_683809.1 3512727 D 375451 CDS YP_683810.1 110680803 4195490 complement(3513688..3514236) 1 NC_008209.1 MarR family transcriptional regulator 3514236 4195490 RD1_3650 Roseobacter denitrificans OCh 114 MarR family transcriptional regulator YP_683810.1 3513688 R 375451 CDS YP_683811.1 110680804 4195491 3514405..3515754 1 NC_008209.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 3515754 hmgA 4195491 hmgA Roseobacter denitrificans OCh 114 homogentisate 1,2-dioxygenase YP_683811.1 3514405 D 375451 CDS YP_683812.1 110680805 4195492 3515760..3516395 1 NC_008209.1 maleylacetoacetate isomerase 3516395 maiA 4195492 maiA Roseobacter denitrificans OCh 114 maleylacetoacetate isomerase YP_683812.1 3515760 D 375451 CDS YP_683813.1 110680806 4195493 3516406..3517656 1 NC_008209.1 fumarylacetoacetase 3517656 fahA 4195493 fahA Roseobacter denitrificans OCh 114 fumarylacetoacetase YP_683813.1 3516406 D 375451 CDS YP_683814.1 110680807 4195494 3518094..3518633 1 NC_008209.1 cytochrome b561 3518633 cybB 4195494 cybB Roseobacter denitrificans OCh 114 cytochrome b561 YP_683814.1 3518094 D 375451 CDS YP_683815.1 110680808 4195495 complement(3518695..3518817) 1 NC_008209.1 hypothetical protein 3518817 4195495 RD1_3655 Roseobacter denitrificans OCh 114 hypothetical protein YP_683815.1 3518695 R 375451 CDS YP_683816.1 110680809 4195496 complement(3518732..3518842) 1 NC_008209.1 hypothetical protein 3518842 4195496 RD1_3656 Roseobacter denitrificans OCh 114 hypothetical protein YP_683816.1 3518732 R 375451 CDS YP_683817.1 110680810 4195497 complement(3518832..3519932) 1 NC_008209.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 3519932 pabB 4195497 pabB Roseobacter denitrificans OCh 114 aminodeoxychorismate synthase YP_683817.1 3518832 R 375451 CDS YP_683818.1 110680811 4195498 complement(3519962..3520255) 1 NC_008209.1 hypothetical protein 3520255 4195498 RD1_3658 Roseobacter denitrificans OCh 114 hypothetical protein YP_683818.1 3519962 R 375451 CDS YP_683819.1 110680812 4195499 complement(3520620..3523334) 1 NC_008209.1 methionine synthase 3523334 metH 4195499 metH Roseobacter denitrificans OCh 114 methionine synthase YP_683819.1 3520620 R 375451 CDS YP_683820.1 110680813 4195500 complement(3523331..3524374) 1 NC_008209.1 methionine synthase 3524374 metH 4195500 metH Roseobacter denitrificans OCh 114 methionine synthase YP_683820.1 3523331 R 375451 CDS YP_683821.1 110680814 4194941 complement(3524487..3524660) 1 NC_008209.1 hypothetical protein 3524660 4194941 RD1_3661 Roseobacter denitrificans OCh 114 hypothetical protein YP_683821.1 3524487 R 375451 CDS YP_683822.1 110680815 4194942 3524828..3525718 1 NC_008209.1 hypothetical protein 3525718 4194942 RD1_3662 Roseobacter denitrificans OCh 114 hypothetical protein YP_683822.1 3524828 D 375451 CDS YP_683823.1 110680816 4194943 complement(3525817..3526131) 1 NC_008209.1 hypothetical protein 3526131 4194943 RD1_3663 Roseobacter denitrificans OCh 114 hypothetical protein YP_683823.1 3525817 R 375451 CDS YP_683824.1 110680817 4194944 complement(3526289..3528961) 1 NC_008209.1 dimethyl sulfoxide reductase 3528961 dmsA 4194944 dmsA Roseobacter denitrificans OCh 114 dimethyl sulfoxide reductase YP_683824.1 3526289 R 375451 CDS YP_683825.1 110680818 4194945 3529076..3529780 1 NC_008209.1 response regulator TorR 3529780 torR 4194945 torR Roseobacter denitrificans OCh 114 response regulator TorR YP_683825.1 3529076 D 375451 CDS YP_683826.1 110680819 4194946 complement(3529753..3531921) 1 NC_008209.1 sensor protein TorS 3531921 torS 4194946 torS Roseobacter denitrificans OCh 114 sensor protein TorS YP_683826.1 3529753 R 375451 CDS YP_683827.1 110680820 4194947 3532511..3533521 1 NC_008209.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3533521 torT 4194947 torT Roseobacter denitrificans OCh 114 TMAO reductase system periplasmic protein TorT YP_683827.1 3532511 D 375451 CDS YP_683828.1 110680821 4194948 complement(3533558..3534523) 1 NC_008209.1 hypothetical protein 3534523 4194948 RD1_3669 Roseobacter denitrificans OCh 114 hypothetical protein YP_683828.1 3533558 R 375451 CDS YP_683829.1 110680822 4194949 complement(3534539..3535996) 1 NC_008209.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3535996 4194949 RD1_3670 Roseobacter denitrificans OCh 114 dihydrolipoamide dehydrogenase YP_683829.1 3534539 R 375451 CDS YP_683830.1 110680823 4194950 complement(3536028..3536300) 1 NC_008209.1 glutaredoxin 3 3536300 grxC 4194950 grxC Roseobacter denitrificans OCh 114 glutaredoxin 3 YP_683830.1 3536028 R 375451 CDS YP_683831.1 110680824 4194951 complement(3536352..3536852) 1 NC_008209.1 hypothetical protein 3536852 4194951 RD1_3672 Roseobacter denitrificans OCh 114 hypothetical protein YP_683831.1 3536352 R 375451 CDS YP_683832.1 110680825 4194952 3536990..3537586 1 NC_008209.1 TetR family transcriptional regulator 3537586 4194952 RD1_3673 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_683832.1 3536990 D 375451 CDS YP_683833.1 110680826 4194953 3537846..3538889 1 NC_008209.1 pyridoxal-phosphate dependent protein 3538889 4194953 RD1_3674 Roseobacter denitrificans OCh 114 pyridoxal-phosphate dependent protein YP_683833.1 3537846 D 375451 CDS YP_683834.1 110680827 4194954 complement(3538900..3541917) 1 NC_008209.1 hypothetical protein 3541917 4194954 RD1_3675 Roseobacter denitrificans OCh 114 hypothetical protein YP_683834.1 3538900 R 375451 CDS YP_683835.1 110680828 4194955 complement(3542059..3543423) 1 NC_008209.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 3543423 hutF 4194955 hutF Roseobacter denitrificans OCh 114 N-formimino-L-glutamate deiminase YP_683835.1 3542059 R 375451 CDS YP_683836.1 110680829 4194956 3543499..3544692 1 NC_008209.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 3544692 hutI 4194956 hutI Roseobacter denitrificans OCh 114 imidazolonepropionase YP_683836.1 3543499 D 375451 CDS YP_683837.1 110680830 4194957 3544689..3546230 1 NC_008209.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 3546230 hutH 4194957 hutH Roseobacter denitrificans OCh 114 histidine ammonia-lyase YP_683837.1 3544689 D 375451 CDS YP_683838.1 110680831 4194958 3546227..3547021 1 NC_008209.1 N-formylglutamate amidohydrolase 3547021 hutG 4194958 hutG Roseobacter denitrificans OCh 114 N-formylglutamate amidohydrolase YP_683838.1 3546227 D 375451 CDS YP_683839.1 110680832 4194959 3547018..3548184 1 NC_008209.1 CAIB/BAIF family protein 3548184 4194959 RD1_3680 Roseobacter denitrificans OCh 114 CAIB/BAIF family protein YP_683839.1 3547018 D 375451 CDS YP_683840.1 110680833 4195303 3548181..3549326 1 NC_008209.1 acyl-CoA dehydrogenase 3549326 acdA 4195303 acdA Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_683840.1 3548181 D 375451 CDS YP_683841.1 110680834 4195304 3549338..3551008 1 NC_008209.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 3551008 hutU 4195304 hutU Roseobacter denitrificans OCh 114 urocanate hydratase YP_683841.1 3549338 D 375451 CDS YP_683842.1 110680835 4195305 3551026..3552066 1 NC_008209.1 vanillate O-demethylase oxygenase 3552066 van 4195305 van Roseobacter denitrificans OCh 114 vanillate O-demethylase oxygenase YP_683842.1 3551026 D 375451 CDS YP_683843.1 110680836 4195306 3552104..3552907 1 NC_008209.1 phytanoyl-CoA dioxygenase 3552907 4195306 RD1_3684 Roseobacter denitrificans OCh 114 phytanoyl-CoA dioxygenase YP_683843.1 3552104 D 375451 CDS YP_683844.1 110680837 4195307 complement(3553001..3553129) 1 NC_008209.1 hypothetical protein 3553129 4195307 RD1_3685 Roseobacter denitrificans OCh 114 hypothetical protein YP_683844.1 3553001 R 375451 CDS YP_683845.1 110680838 4195308 3553028..3553141 1 NC_008209.1 hypothetical protein 3553141 4195308 RD1_3686 Roseobacter denitrificans OCh 114 hypothetical protein YP_683845.1 3553028 D 375451 CDS YP_683846.1 110680839 4195309 complement(3553203..3553790) 1 NC_008209.1 cytochrome c family protein 3553790 4195309 RD1_3687 Roseobacter denitrificans OCh 114 cytochrome c family protein YP_683846.1 3553203 R 375451 CDS YP_683847.1 110680840 4195310 complement(3553787..3554956) 1 NC_008209.1 L-sorbosone dehydrogenase 3554956 sndH 4195310 sndH Roseobacter denitrificans OCh 114 L-sorbosone dehydrogenase YP_683847.1 3553787 R 375451 CDS YP_683848.1 110680841 4195311 complement(3555342..3556247) 1 NC_008209.1 DNA repair protein RadC 3556247 radC 4195311 radC Roseobacter denitrificans OCh 114 DNA repair protein RadC YP_683848.1 3555342 R 375451 CDS YP_683849.1 110680842 4195312 3556240..3556341 1 NC_008209.1 hypothetical protein 3556341 4195312 RD1_3691 Roseobacter denitrificans OCh 114 hypothetical protein YP_683849.1 3556240 D 375451 CDS YP_683850.1 110680843 4195313 complement(3556349..3556492) 1 NC_008209.1 hypothetical protein 3556492 4195313 RD1_3692 Roseobacter denitrificans OCh 114 hypothetical protein YP_683850.1 3556349 R 375451 CDS YP_683851.1 110680844 4195314 3556550..3558283 1 NC_008209.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3558283 ilvD 4195314 ilvD Roseobacter denitrificans OCh 114 dihydroxy-acid dehydratase YP_683851.1 3556550 D 375451 CDS YP_683852.1 110680845 4195315 3558346..3558651 1 NC_008209.1 hypothetical protein 3558651 4195315 RD1_3694 Roseobacter denitrificans OCh 114 hypothetical protein YP_683852.1 3558346 D 375451 CDS YP_683853.1 110680846 4195316 3558723..3560123 1 NC_008209.1 hypothetical protein 3560123 4195316 RD1_3695 Roseobacter denitrificans OCh 114 hypothetical protein YP_683853.1 3558723 D 375451 CDS YP_683854.1 110680847 4195317 3560335..3562200 1 NC_008209.1 molecular chaperone; heat shock protein 90 3562200 htpG 4195317 htpG Roseobacter denitrificans OCh 114 heat shock protein 90 YP_683854.1 3560335 D 375451 CDS YP_683855.1 110680848 4195318 3562295..3562792 1 NC_008209.1 hypothetical protein 3562792 4195318 RD1_3697 Roseobacter denitrificans OCh 114 hypothetical protein YP_683855.1 3562295 D 375451 CDS YP_683856.1 110680849 4195319 3563000..3565516 1 NC_008209.1 sodium/hydrogen exchanger family protein 3565516 4195319 RD1_3698 Roseobacter denitrificans OCh 114 sodium/hydrogen exchanger family protein YP_683856.1 3563000 D 375451 CDS YP_683857.1 110680850 4195320 3565691..3566935 1 NC_008209.1 hypothetical protein 3566935 4195320 RD1_3699 Roseobacter denitrificans OCh 114 hypothetical protein YP_683857.1 3565691 D 375451 CDS YP_683858.1 110680851 4195321 complement(3567559..3570063) 1 NC_008209.1 diguanylate cyclase 3570063 4195321 RD1_3700 Roseobacter denitrificans OCh 114 diguanylate cyclase YP_683858.1 3567559 R 375451 CDS YP_683859.1 110680852 4195322 3570142..3570522 1 NC_008209.1 hypothetical protein 3570522 4195322 RD1_3701 Roseobacter denitrificans OCh 114 hypothetical protein YP_683859.1 3570142 D 375451 CDS YP_683860.1 110680853 4196120 3570519..3572144 1 NC_008209.1 dihydroxyacetone kinase 3572144 4196120 RD1_3702 Roseobacter denitrificans OCh 114 dihydroxyacetone kinase YP_683860.1 3570519 D 375451 CDS YP_683861.1 110680854 4196121 3572461..3573588 1 NC_008209.1 oxidoreductase 3573588 4196121 RD1_3703 Roseobacter denitrificans OCh 114 oxidoreductase YP_683861.1 3572461 D 375451 CDS YP_683862.1 110680855 4196122 3573593..3575029 1 NC_008209.1 xylulose kinase 3575029 xylB 4196122 xylB Roseobacter denitrificans OCh 114 xylulose kinase YP_683862.1 3573593 D 375451 CDS YP_683863.1 110680856 4196123 3575033..3576334 1 NC_008209.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3576334 xylA 4196123 xylA Roseobacter denitrificans OCh 114 xylose isomerase YP_683863.1 3575033 D 375451 CDS YP_683864.1 110680857 4196124 complement(3576454..3578253) 1 NC_008209.1 monooxygenase 3578253 4196124 RD1_3706 Roseobacter denitrificans OCh 114 monooxygenase YP_683864.1 3576454 R 375451 CDS YP_683865.1 110680858 4196125 complement(3578399..3578566) 1 NC_008209.1 hypothetical protein 3578566 4196125 RD1_3707 Roseobacter denitrificans OCh 114 hypothetical protein YP_683865.1 3578399 R 375451 CDS YP_683866.1 110680859 4196126 complement(3578656..3579810) 1 NC_008209.1 hypothetical protein 3579810 4196126 RD1_3708 Roseobacter denitrificans OCh 114 hypothetical protein YP_683866.1 3578656 R 375451 CDS YP_683867.1 110680860 4196127 complement(3579846..3581825) 1 NC_008209.1 hypothetical protein 3581825 4196127 RD1_3709 Roseobacter denitrificans OCh 114 hypothetical protein YP_683867.1 3579846 R 375451 CDS YP_683868.1 110680861 4196128 3582184..3582714 1 NC_008209.1 hypothetical protein 3582714 4196128 RD1_3710 Roseobacter denitrificans OCh 114 hypothetical protein YP_683868.1 3582184 D 375451 CDS YP_683869.1 110680862 4196129 3582711..3582866 1 NC_008209.1 hypothetical protein 3582866 4196129 RD1_3711 Roseobacter denitrificans OCh 114 hypothetical protein YP_683869.1 3582711 D 375451 CDS YP_683870.1 110680863 4196130 complement(3582786..3582887) 1 NC_008209.1 hypothetical protein 3582887 4196130 RD1_3712 Roseobacter denitrificans OCh 114 hypothetical protein YP_683870.1 3582786 R 375451 CDS YP_683871.1 110680864 4196131 3582882..3583664 1 NC_008209.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 3583664 mpgP 4196131 mpgP Roseobacter denitrificans OCh 114 mannosyl-3-phosphoglycerate phosphatase YP_683871.1 3582882 D 375451 CDS YP_683872.1 110680865 4196132 3583836..3584900 1 NC_008209.1 hypothetical protein 3584900 4196132 RD1_3714 Roseobacter denitrificans OCh 114 hypothetical protein YP_683872.1 3583836 D 375451 CDS YP_683873.1 110680866 4196133 complement(3584915..3586642) 1 NC_008209.1 sucrose phosphorylase 3586642 gtfA 4196133 gtfA Roseobacter denitrificans OCh 114 sucrose phosphorylase YP_683873.1 3584915 R 375451 CDS YP_683874.1 110680867 4196134 complement(3586847..3587779) 1 NC_008209.1 gluconolactonase 3587779 gnl 4196134 gnl Roseobacter denitrificans OCh 114 gluconolactonase YP_683874.1 3586847 R 375451 CDS YP_683875.1 110680868 4196135 complement(3587739..3588503) 1 NC_008209.1 hypothetical protein 3588503 4196135 RD1_3717 Roseobacter denitrificans OCh 114 hypothetical protein YP_683875.1 3587739 R 375451 CDS YP_683876.1 110680869 4196136 complement(3588500..3589435) 1 NC_008209.1 sugar ABC transporter permease 3589435 4196136 RD1_3718 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683876.1 3588500 R 375451 CDS YP_683877.1 110680870 4196137 complement(3589435..3590349) 1 NC_008209.1 sugar ABC transporter permease 3590349 4196137 RD1_3719 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683877.1 3589435 R 375451 CDS YP_683878.1 110680871 4196138 complement(3590426..3591754) 1 NC_008209.1 sugar ABC transporter substrate-binding protein 3591754 4196138 RD1_3720 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding protein YP_683878.1 3590426 R 375451 CDS YP_683879.1 110680872 4195828 complement(3591784..3592872) 1 NC_008209.1 alginate ABC transporter ATP-binding protein 3592872 algS 4195828 algS Roseobacter denitrificans OCh 114 alginate ABC transporter ATP-binding protein YP_683879.1 3591784 R 375451 CDS YP_683880.1 110680873 4195829 complement(3592970..3594010) 1 NC_008209.1 LacI family transcriptional regulator 3594010 4195829 RD1_3722 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_683880.1 3592970 R 375451 CDS YP_683881.1 110680874 4195830 complement(3594623..3594763) 1 NC_008209.1 hypothetical protein 3594763 4195830 RD1_3723 Roseobacter denitrificans OCh 114 hypothetical protein YP_683881.1 3594623 R 375451 CDS YP_683882.1 110680875 4195831 complement(3595018..3597630) 1 NC_008209.1 hypothetical protein 3597630 4195831 RD1_3724 Roseobacter denitrificans OCh 114 hypothetical protein YP_683882.1 3595018 R 375451 CDS YP_683883.1 110680876 4195832 3597762..3599489 1 NC_008209.1 toxin secretion ABC transporter ATP binding protein 3599489 4195832 RD1_3725 Roseobacter denitrificans OCh 114 toxin secretion ABC transporter ATP binding protein YP_683883.1 3597762 D 375451 CDS YP_683884.1 110680877 4195833 3599489..3601579 1 NC_008209.1 toxin secretion ABC transporter ATP binding component 3601579 4195833 RD1_3726 Roseobacter denitrificans OCh 114 toxin secretion ABC transporter ATP binding component YP_683884.1 3599489 D 375451 CDS YP_683885.1 110680878 4195834 3601710..3602897 1 NC_008209.1 leukotoxin secretion protein D 3602897 lktD 4195834 lktD Roseobacter denitrificans OCh 114 leukotoxin secretion protein D YP_683885.1 3601710 D 375451 CDS YP_683886.1 110680879 4195835 3603081..3604406 1 NC_008209.1 ABC1 family protein 3604406 4195835 RD1_3730 Roseobacter denitrificans OCh 114 ABC1 family protein YP_683886.1 3603081 D 375451 CDS YP_683887.1 110680880 4195836 3604574..3605338 1 NC_008209.1 hypothetical protein 3605338 4195836 RD1_3731 Roseobacter denitrificans OCh 114 hypothetical protein YP_683887.1 3604574 D 375451 CDS YP_683888.1 110680881 4195837 3605323..3605457 1 NC_008209.1 hypothetical protein 3605457 4195837 RD1_3732 Roseobacter denitrificans OCh 114 hypothetical protein YP_683888.1 3605323 D 375451 CDS YP_683889.1 110680882 4195838 3605495..3607777 1 NC_008209.1 mechanosensitive ion channel protein 3607777 4195838 RD1_3733 Roseobacter denitrificans OCh 114 mechanosensitive ion channel protein YP_683889.1 3605495 D 375451 CDS YP_683890.1 110680883 4195839 complement(3607914..3611009) 1 NC_008209.1 hypothetical protein 3611009 4195839 RD1_3734 Roseobacter denitrificans OCh 114 hypothetical protein YP_683890.1 3607914 R 375451 CDS YP_683891.1 110680884 4195840 complement(3611015..3615001) 1 NC_008209.1 hypothetical protein 3615001 4195840 RD1_3735 Roseobacter denitrificans OCh 114 hypothetical protein YP_683891.1 3611015 R 375451 CDS YP_683892.1 110680885 4195841 complement(3615005..3622378) 1 NC_008209.1 hypothetical protein 3622378 4195841 RD1_3736 Roseobacter denitrificans OCh 114 hypothetical protein YP_683892.1 3615005 R 375451 CDS YP_683893.1 110680886 4195842 complement(3622757..3623659) 1 NC_008209.1 ribokinase 3623659 rbsK 4195842 rbsK Roseobacter denitrificans OCh 114 ribokinase YP_683893.1 3622757 R 375451 CDS YP_683894.1 110680887 4195843 complement(3623660..3624106) 1 NC_008209.1 fucose operon FucU protein 3624106 fucU 4195843 fucU Roseobacter denitrificans OCh 114 fucose operon FucU protein YP_683894.1 3623660 R 375451 CDS YP_683895.1 110680888 4195844 complement(3624192..3625229) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3625229 4195844 RD1_3739 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_683895.1 3624192 R 375451 CDS YP_683896.1 110680889 4195845 3625447..3627078 1 NC_008209.1 solute-binding protein 3627078 4195845 RD1_3740 Roseobacter denitrificans OCh 114 solute-binding protein YP_683896.1 3625447 D 375451 CDS YP_683897.1 110680890 4195846 3627490..3627969 1 NC_008209.1 hypothetical protein 3627969 4195846 RD1_3741 Roseobacter denitrificans OCh 114 hypothetical protein YP_683897.1 3627490 D 375451 CDS YP_683898.1 110680891 4195847 3628484..3629461 1 NC_008209.1 sugar ABC transporter permease 3629461 4195847 RD1_3742 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683898.1 3628484 D 375451 CDS YP_683899.1 110680892 4196248 3629497..3630372 1 NC_008209.1 sugar ABC transporter permease 3630372 4196248 RD1_3743 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_683899.1 3629497 D 375451 CDS YP_683900.1 110680893 4196249 complement(3630601..3632718) 1 NC_008209.1 sulfatase 3632718 4196249 RD1_3744 Roseobacter denitrificans OCh 114 sulfatase YP_683900.1 3630601 R 375451 CDS YP_683901.1 110680894 4196250 complement(3632699..3632995) 1 NC_008209.1 hypothetical protein 3632995 4196250 RD1_3746 Roseobacter denitrificans OCh 114 hypothetical protein YP_683901.1 3632699 R 375451 CDS YP_683902.1 110680895 4196251 complement(3633011..3633139) 1 NC_008209.1 hypothetical protein 3633139 4196251 RD1_3747 Roseobacter denitrificans OCh 114 hypothetical protein YP_683902.1 3633011 R 375451 CDS YP_683903.1 110680896 4196252 complement(3633182..3633964) 1 NC_008209.1 hypothetical protein 3633964 4196252 RD1_3748 Roseobacter denitrificans OCh 114 hypothetical protein YP_683903.1 3633182 R 375451 CDS YP_683904.1 110680897 4196253 complement(3634009..3635463) 1 NC_008209.1 hypothetical protein 3635463 4196253 RD1_3749 Roseobacter denitrificans OCh 114 hypothetical protein YP_683904.1 3634009 R 375451 CDS YP_683905.1 110680898 4196254 complement(3635617..3636390) 1 NC_008209.1 hypothetical protein 3636390 4196254 RD1_3750 Roseobacter denitrificans OCh 114 hypothetical protein YP_683905.1 3635617 R 375451 CDS YP_683906.1 110680899 4196255 3636637..3637242 1 NC_008209.1 transcriptional regulator 3637242 4196255 RD1_3751 Roseobacter denitrificans OCh 114 transcriptional regulator YP_683906.1 3636637 D 375451 CDS YP_683907.1 110680900 4196256 complement(3637400..3637498) 1 NC_008209.1 hypothetical protein 3637498 4196256 RD1_3752 Roseobacter denitrificans OCh 114 hypothetical protein YP_683907.1 3637400 R 375451 CDS YP_683908.1 110680901 4196257 complement(3637550..3638467) 1 NC_008209.1 homocysteine S-methyltransferase 3638467 4196257 RD1_3753 Roseobacter denitrificans OCh 114 homocysteine S-methyltransferase YP_683908.1 3637550 R 375451 CDS YP_683909.1 110680902 4196258 3638589..3638768 1 NC_008209.1 hypothetical protein 3638768 4196258 RD1_3754 Roseobacter denitrificans OCh 114 hypothetical protein YP_683909.1 3638589 D 375451 CDS YP_683910.1 110680903 4196259 complement(3638814..3639818) 1 NC_008209.1 oxidoreductase 3639818 4196259 RD1_3755 Roseobacter denitrificans OCh 114 oxidoreductase YP_683910.1 3638814 R 375451 CDS YP_683911.1 110680904 4196260 complement(3639887..3640690) 1 NC_008209.1 short chain dehydrogenase 3640690 4196260 RD1_3756 Roseobacter denitrificans OCh 114 short chain dehydrogenase YP_683911.1 3639887 R 375451 CDS YP_683912.1 110680905 4196261 complement(3640782..3641192) 1 NC_008209.1 hypothetical protein 3641192 4196261 RD1_3758 Roseobacter denitrificans OCh 114 hypothetical protein YP_683912.1 3640782 R 375451 CDS YP_683913.1 110680906 4196262 3641269..3642165 1 NC_008209.1 LysR family transcriptional regulator 3642165 4196262 RD1_3759 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_683913.1 3641269 D 375451 CDS YP_683914.1 110680907 4196263 complement(3642301..3643788) 1 NC_008209.1 xylulose kinase 3643788 xylB 4196263 xylB Roseobacter denitrificans OCh 114 xylulose kinase YP_683914.1 3642301 R 375451 CDS YP_683915.1 110680908 4196264 complement(3643824..3644015) 1 NC_008209.1 hypothetical protein 3644015 4196264 RD1_3761 Roseobacter denitrificans OCh 114 hypothetical protein YP_683915.1 3643824 R 375451 CDS YP_683916.1 110680909 4196265 3644056..3645084 1 NC_008209.1 oxidoreductase 3645084 4196265 RD1_3762 Roseobacter denitrificans OCh 114 oxidoreductase YP_683916.1 3644056 D 375451 CDS YP_683917.1 110680910 4196266 3645092..3645934 1 NC_008209.1 hypothetical protein 3645934 4196266 RD1_3763 Roseobacter denitrificans OCh 114 hypothetical protein YP_683917.1 3645092 D 375451 CDS YP_683918.1 110680911 4195617 complement(3645919..3646758) 1 NC_008209.1 ribokinase 3646758 rbsK 4195617 rbsK Roseobacter denitrificans OCh 114 ribokinase YP_683918.1 3645919 R 375451 CDS YP_683919.1 110680912 4195618 complement(3646755..3647741) 1 NC_008209.1 xylose isomerase 3647741 xylA 4195618 xylA Roseobacter denitrificans OCh 114 xylose isomerase YP_683919.1 3646755 R 375451 CDS YP_683920.1 110680913 4195619 complement(3647845..3648195) 1 NC_008209.1 hypothetical protein 3648195 4195619 RD1_3766 Roseobacter denitrificans OCh 114 hypothetical protein YP_683920.1 3647845 R 375451 CDS YP_683921.1 110680914 4195620 complement(3648192..3649466) 1 NC_008209.1 hypothetical protein 3649466 4195620 RD1_3767 Roseobacter denitrificans OCh 114 hypothetical protein YP_683921.1 3648192 R 375451 CDS YP_683922.1 110680915 4195621 complement(3649632..3650603) 1 NC_008209.1 hypothetical protein 3650603 4195621 RD1_3768 Roseobacter denitrificans OCh 114 hypothetical protein YP_683922.1 3649632 R 375451 CDS YP_683923.1 110680916 4195622 complement(3650820..3651236) 1 NC_008209.1 universal stress family protein 3651236 4195622 RD1_3769 Roseobacter denitrificans OCh 114 universal stress family protein YP_683923.1 3650820 R 375451 CDS YP_683924.1 110680917 4195623 3651609..3652709 1 NC_008209.1 solute-binding family 7 protein 3652709 4195623 RD1_3770 Roseobacter denitrificans OCh 114 solute-binding family 7 protein YP_683924.1 3651609 D 375451 CDS YP_683925.1 110680918 4195624 3653410..3654111 1 NC_008209.1 TRAP transporter DctQ-like membrane protein 3654111 4195624 RD1_3771 Roseobacter denitrificans OCh 114 TRAP transporter DctQ-like membrane protein YP_683925.1 3653410 D 375451 CDS YP_683926.1 110680919 4195625 3654115..3655470 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 3655470 4195625 RD1_3772 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_683926.1 3654115 D 375451 CDS YP_683927.1 110680920 4195626 3655601..3655984 1 NC_008209.1 4-carboxymuconolactone decarboxylase 3655984 pcaC 4195626 pcaC Roseobacter denitrificans OCh 114 4-carboxymuconolactone decarboxylase YP_683927.1 3655601 D 375451 CDS YP_683928.1 110680921 4195627 3655981..3656703 1 NC_008209.1 protocatechuate 3,4-dioxygenase subunit beta 3656703 pcaH 4195627 pcaH Roseobacter denitrificans OCh 114 protocatechuate 3,4-dioxygenase subunit beta YP_683928.1 3655981 D 375451 CDS YP_683929.1 110680922 4195628 3656706..3657293 1 NC_008209.1 protocatechuate 3,4-dioxygenase subunit alpha 3657293 pcaG 4195628 pcaG Roseobacter denitrificans OCh 114 protocatechuate 3,4-dioxygenase subunit alpha YP_683929.1 3656706 D 375451 CDS YP_683930.1 110680923 4195629 complement(3657297..3658244) 1 NC_008209.1 glucokinase 3658244 glk 4195629 glk Roseobacter denitrificans OCh 114 glucokinase YP_683930.1 3657297 R 375451 CDS YP_683931.1 110680924 4195630 complement(3658388..3659005) 1 NC_008209.1 hypothetical protein 3659005 4195630 RD1_3777 Roseobacter denitrificans OCh 114 hypothetical protein YP_683931.1 3658388 R 375451 CDS YP_683932.1 110680925 4195631 complement(3659061..3660284) 1 NC_008209.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 3660284 hemA 4195631 hemA Roseobacter denitrificans OCh 114 5-aminolevulinate synthase YP_683932.1 3659061 R 375451 CDS YP_683933.1 110680926 4195632 complement(3660242..3660358) 1 NC_008209.1 hypothetical protein 3660358 4195632 RD1_3779 Roseobacter denitrificans OCh 114 hypothetical protein YP_683933.1 3660242 R 375451 CDS YP_683934.1 110680927 4195633 complement(3660516..3660914) 1 NC_008209.1 hypothetical protein 3660914 4195633 RD1_3780 Roseobacter denitrificans OCh 114 hypothetical protein YP_683934.1 3660516 R 375451 CDS YP_683935.1 110680928 4195634 complement(3660914..3662176) 1 NC_008209.1 hypothetical protein 3662176 4195634 RD1_3781 Roseobacter denitrificans OCh 114 hypothetical protein YP_683935.1 3660914 R 375451 CDS YP_683936.1 110680929 4195635 complement(3662207..3663214) 1 NC_008209.1 AraC family transcriptional regulator 3663214 4195635 RD1_3782 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_683936.1 3662207 R 375451 CDS YP_683937.1 110680930 4195636 complement(3663360..3664127) 1 NC_008209.1 hypothetical protein 3664127 4195636 RD1_3783 Roseobacter denitrificans OCh 114 hypothetical protein YP_683937.1 3663360 R 375451 CDS YP_683938.1 110680931 4198833 complement(3664124..3664774) 1 NC_008209.1 aldolase 3664774 4198833 RD1_3784 Roseobacter denitrificans OCh 114 aldolase YP_683938.1 3664124 R 375451 CDS YP_683939.1 110680932 4198834 complement(3664771..3666039) 1 NC_008209.1 hypothetical protein 3666039 4198834 RD1_3785 Roseobacter denitrificans OCh 114 hypothetical protein YP_683939.1 3664771 R 375451 CDS YP_683940.1 110680933 4198835 complement(3666063..3666965) 1 NC_008209.1 3-hydroxyisobutyrate dehydrogenase 3666965 mmsB 4198835 mmsB Roseobacter denitrificans OCh 114 3-hydroxyisobutyrate dehydrogenase YP_683940.1 3666063 R 375451 CDS YP_683941.1 110680934 4198836 complement(3667048..3667743) 1 NC_008209.1 GntR family transcriptional regulator 3667743 gntR 4198836 gntR Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_683941.1 3667048 R 375451 CDS YP_683942.1 110680935 4198837 complement(3667716..3668735) 1 NC_008209.1 NADH-dependent dyhydrogenase 3668735 4198837 RD1_3788 Roseobacter denitrificans OCh 114 NADH-dependent dyhydrogenase YP_683942.1 3667716 R 375451 CDS YP_683943.1 110680936 4198838 complement(3668732..3669820) 1 NC_008209.1 3-isopropylmalate dehydrogenase 3669820 leuB 4198838 leuB Roseobacter denitrificans OCh 114 3-isopropylmalate dehydrogenase YP_683943.1 3668732 R 375451 CDS YP_683944.1 110680937 4198839 3669957..3670247 1 NC_008209.1 hypothetical protein 3670247 4198839 RD1_3790 Roseobacter denitrificans OCh 114 hypothetical protein YP_683944.1 3669957 D 375451 CDS YP_683945.1 110680938 4198840 3670244..3671041 1 NC_008209.1 metallo-beta-lactamase family protein 3671041 4198840 RD1_3791 Roseobacter denitrificans OCh 114 metallo-beta-lactamase family protein YP_683945.1 3670244 D 375451 CDS YP_683946.1 110680939 4198841 3671168..3671989 1 NC_008209.1 urease accessory protein UreD 3671989 ureD 4198841 ureD Roseobacter denitrificans OCh 114 urease accessory protein UreD YP_683946.1 3671168 D 375451 CDS YP_683947.1 110680940 4198842 3671993..3672295 1 NC_008209.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3672295 ureA 4198842 ureA Roseobacter denitrificans OCh 114 urease subunit gamma YP_683947.1 3671993 D 375451 CDS YP_683948.1 110680941 4198843 3672305..3672610 1 NC_008209.1 urease subunit beta 3672610 ureB 4198843 ureB Roseobacter denitrificans OCh 114 urease subunit beta YP_683948.1 3672305 D 375451 CDS YP_683949.1 110680942 4198844 3672643..3673464 1 NC_008209.1 cyclase 3673464 4198844 RD1_3797 Roseobacter denitrificans OCh 114 cyclase YP_683949.1 3672643 D 375451 CDS YP_683950.1 110680943 4198845 3673464..3673859 1 NC_008209.1 hypothetical protein 3673859 4198845 RD1_3798 Roseobacter denitrificans OCh 114 hypothetical protein YP_683950.1 3673464 D 375451 CDS YP_683951.1 110680944 4198846 3674337..3676046 1 NC_008209.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3676046 ureC 4198846 ureC Roseobacter denitrificans OCh 114 urease subunit alpha YP_683951.1 3674337 D 375451 CDS YP_683952.1 110680945 4198847 3676043..3676585 1 NC_008209.1 hypothetical protein 3676585 4198847 RD1_3801 Roseobacter denitrificans OCh 114 hypothetical protein YP_683952.1 3676043 D 375451 CDS YP_683953.1 110680946 4198848 3676713..3677204 1 NC_008209.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3677204 ureE 4198848 ureE Roseobacter denitrificans OCh 114 urease accessory protein UreE YP_683953.1 3676713 D 375451 CDS YP_683954.1 110680947 4198849 3677167..3677835 1 NC_008209.1 urease accessory protein UreF 3677835 ureF 4198849 ureF Roseobacter denitrificans OCh 114 urease accessory protein UreF YP_683954.1 3677167 D 375451 CDS YP_683955.1 110680948 4198850 3677832..3678500 1 NC_008209.1 urease accessory protein UreG 3678500 ureG 4198850 ureG Roseobacter denitrificans OCh 114 urease accessory protein UreG YP_683955.1 3677832 D 375451 CDS YP_683956.1 110680949 4198851 complement(3678510..3679622) 1 NC_008209.1 glutathione-dependent formaldehyde dehydrogenase 3679622 flhA 4198851 flhA Roseobacter denitrificans OCh 114 glutathione-dependent formaldehyde dehydrogenase YP_683956.1 3678510 R 375451 CDS YP_683957.1 110680950 4194998 complement(3679675..3680697) 1 NC_008209.1 LacI family transcriptional regulator 3680697 4194998 RD1_3807 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_683957.1 3679675 R 375451 CDS YP_683958.1 110680951 4194999 3680861..3682168 1 NC_008209.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3682168 hisD 4194999 hisD Roseobacter denitrificans OCh 114 histidinol dehydrogenase YP_683958.1 3680861 D 375451 CDS YP_683959.1 110680952 4195000 3682174..3682926 1 NC_008209.1 gluconate 5-dehydrogenase 3682926 gno 4195000 gno Roseobacter denitrificans OCh 114 gluconate 5-dehydrogenase YP_683959.1 3682174 D 375451 CDS YP_683960.1 110680953 4195001 3682923..3683930 1 NC_008209.1 sorbitol dehydrogenase 3683930 gutB 4195001 gutB Roseobacter denitrificans OCh 114 sorbitol dehydrogenase YP_683960.1 3682923 D 375451 CDS YP_683961.1 110680954 4195002 3683962..3684366 1 NC_008209.1 universal stress family protein 3684366 4195002 RD1_3811 Roseobacter denitrificans OCh 114 universal stress family protein YP_683961.1 3683962 D 375451 CDS YP_683962.1 110680955 4195003 3684432..3684938 1 NC_008209.1 decarboxylase 3684938 4195003 RD1_3812 Roseobacter denitrificans OCh 114 decarboxylase YP_683962.1 3684432 D 375451 CDS YP_683963.1 110680956 4195004 3684935..3685489 1 NC_008209.1 3-phosphonopyruvate decarboxylase 3685489 bcpC 4195004 bcpC Roseobacter denitrificans OCh 114 3-phosphonopyruvate decarboxylase YP_683963.1 3684935 D 375451 CDS YP_683964.1 110680957 4195005 3685494..3686597 1 NC_008209.1 L-lactate dehydrogenase (cytochrome) 3686597 lldD 4195005 lldD Roseobacter denitrificans OCh 114 L-lactate dehydrogenase (cytochrome) YP_683964.1 3685494 D 375451 CDS YP_683965.1 110680958 4195006 complement(3686752..3687375) 1 NC_008209.1 cobalamin biosynthesis protein BluB 3687375 bluB 4195006 bluB Roseobacter denitrificans OCh 114 cobalamin biosynthesis protein BluB YP_683965.1 3686752 R 375451 CDS YP_683966.1 110680959 4195007 complement(3687436..3688179) 1 NC_008209.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 3688179 cobF 4195007 cobF Roseobacter denitrificans OCh 114 precorrin 6A synthase YP_683966.1 3687436 R 375451 CDS YP_683967.1 110680960 4195008 complement(3688188..3688907) 1 NC_008209.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 3688907 cobA 4195008 cobA Roseobacter denitrificans OCh 114 uroporphyrin-III C-methyltransferase YP_683967.1 3688188 R 375451 CDS YP_683968.1 110680961 4195009 complement(3688904..3690220) 1 NC_008209.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 3690220 cobB 4195009 cobB Roseobacter denitrificans OCh 114 cobyrinic acid a,c-diamide synthase YP_683968.1 3688904 R 375451 CDS YP_683969.1 110680962 4195010 complement(3690213..3691007) 1 NC_008209.1 precorrin-4 C(11)-methyltransferase 3691007 cobM 4195010 cobM Roseobacter denitrificans OCh 114 precorrin-4 C(11)-methyltransferase YP_683969.1 3690213 R 375451 CDS YP_683970.1 110680963 4195011 complement(3691004..3691372) 1 NC_008209.1 hypothetical protein 3691372 4195011 RD1_3820 Roseobacter denitrificans OCh 114 hypothetical protein YP_683970.1 3691004 R 375451 CDS YP_683971.1 110680964 4195012 complement(3691369..3692568) 1 NC_008209.1 precorrin-6Y C(5,15)-methyltransferase 3692568 cobl 4195012 cobl Roseobacter denitrificans OCh 114 precorrin-6Y C(5,15)-methyltransferase YP_683971.1 3691369 R 375451 CDS YP_683972.1 110680965 4195013 3692567..3693322 1 NC_008209.1 precorrin-6A reductase 3693322 cobK 4195013 cobK Roseobacter denitrificans OCh 114 precorrin-6A reductase YP_683972.1 3692567 D 375451 CDS YP_683973.1 110680966 4195014 complement(3693298..3694047) 1 NC_008209.1 precorrin-3B C(17)-methyltransferase 3694047 cobJ 4195014 cobJ Roseobacter denitrificans OCh 114 precorrin-3B C(17)-methyltransferase YP_683973.1 3693298 R 375451 CDS YP_683974.1 110680967 4195015 complement(3694044..3694769) 1 NC_008209.1 precorrin-2 C(20)-methyltransferase 3694769 cobI 4195015 cobI Roseobacter denitrificans OCh 114 precorrin-2 C(20)-methyltransferase YP_683974.1 3694044 R 375451 CDS YP_683975.1 110680968 4195016 complement(3694766..3695395) 1 NC_008209.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 3695395 cobH 4195016 cobH Roseobacter denitrificans OCh 114 precorrin-8X methylmutase YP_683975.1 3694766 R 375451 CDS YP_683976.1 110680969 4195017 complement(3695398..3696537) 1 NC_008209.1 precorrin-3B synthase 3696537 cobG 4195017 cobG Roseobacter denitrificans OCh 114 precorrin-3B synthase YP_683976.1 3695398 R 375451 CDS YP_683977.1 110680970 4198929 complement(3696534..3699800) 1 NC_008209.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 3699800 cobN 4198929 cobN Roseobacter denitrificans OCh 114 cobaltochelatase subunit CobN YP_683977.1 3696534 R 375451 CDS YP_683978.1 110680971 4198930 complement(3699807..3700862) 1 NC_008209.1 cobalamin biosynthesis protein CobW 3700862 cobW 4198930 cobW Roseobacter denitrificans OCh 114 cobalamin biosynthesis protein CobW YP_683978.1 3699807 R 375451 CDS YP_683979.1 110680972 4198931 complement(3700855..3701232) 1 NC_008209.1 hypothetical protein 3701232 4198931 RD1_3829 Roseobacter denitrificans OCh 114 hypothetical protein YP_683979.1 3700855 R 375451 CDS YP_683980.1 110680973 4198932 3701817..3702968 1 NC_008209.1 acetate kinase 3702968 ackA 4198932 ackA Roseobacter denitrificans OCh 114 acetate kinase YP_683980.1 3701817 D 375451 CDS YP_683981.1 110680974 4198933 complement(3702994..3704424) 1 NC_008209.1 cardiolipin synthase 3704424 4198933 RD1_3832 Roseobacter denitrificans OCh 114 cardiolipin synthase YP_683981.1 3702994 R 375451 CDS YP_683982.1 110680975 4198934 complement(3704421..3705104) 1 NC_008209.1 hypothetical protein 3705104 4198934 RD1_3833 Roseobacter denitrificans OCh 114 hypothetical protein YP_683982.1 3704421 R 375451 CDS YP_683983.1 110680976 4198935 3705395..3705589 1 NC_008209.1 hypothetical protein 3705589 4198935 RD1_3834 Roseobacter denitrificans OCh 114 hypothetical protein YP_683983.1 3705395 D 375451 CDS YP_683984.1 110680977 4198936 complement(3705678..3707747) 1 NC_008209.1 chain length determinant domain-containing protein 3707747 4198936 RD1_3835 Roseobacter denitrificans OCh 114 chain length determinant domain-containing protein YP_683984.1 3705678 R 375451 CDS YP_683985.1 110680978 4198937 complement(3707753..3707875) 1 NC_008209.1 hypothetical protein 3707875 4198937 RD1_3836 Roseobacter denitrificans OCh 114 hypothetical protein YP_683985.1 3707753 R 375451 CDS YP_683986.1 110680979 4198938 3708053..3708892 1 NC_008209.1 N-deacetylase/N-sulfotransferase 3708892 4198938 RD1_3837 Roseobacter denitrificans OCh 114 N-deacetylase/N-sulfotransferase YP_683986.1 3708053 D 375451 CDS YP_683987.1 110680980 4198939 3708889..3710160 1 NC_008209.1 hypothetical protein 3710160 4198939 RD1_3838 Roseobacter denitrificans OCh 114 hypothetical protein YP_683987.1 3708889 D 375451 CDS YP_683988.1 110680981 4198940 3710189..3711496 1 NC_008209.1 polysaccharide biosynthesis associate 3711496 4198940 RD1_3839 Roseobacter denitrificans OCh 114 polysaccharide biosynthesis associate YP_683988.1 3710189 D 375451 CDS YP_683989.1 110680982 4198941 complement(3711500..3712546) 1 NC_008209.1 hypothetical protein 3712546 4198941 RD1_3840 Roseobacter denitrificans OCh 114 hypothetical protein YP_683989.1 3711500 R 375451 CDS YP_683990.1 110680983 4198942 3712802..3714031 1 NC_008209.1 polysaccharide biosynthesis/export protein 3714031 4198942 RD1_3841 Roseobacter denitrificans OCh 114 polysaccharide biosynthesis/export protein YP_683990.1 3712802 D 375451 CDS YP_683991.1 110680984 4198943 complement(3714050..3715282) 1 NC_008209.1 hypothetical protein 3715282 4198943 RD1_3842 Roseobacter denitrificans OCh 114 hypothetical protein YP_683991.1 3714050 R 375451 CDS YP_683992.1 110680985 4198944 3715550..3716749 1 NC_008209.1 hypothetical protein 3716749 4198944 RD1_3844 Roseobacter denitrificans OCh 114 hypothetical protein YP_683992.1 3715550 D 375451 CDS YP_683993.1 110680986 4198945 3716829..3717974 1 NC_008209.1 glycoside hydrolase family protein 3717974 4198945 RD1_3845 Roseobacter denitrificans OCh 114 glycoside hydrolase family protein YP_683993.1 3716829 D 375451 CDS YP_683994.1 110680987 4198946 3718046..3718156 1 NC_008209.1 hypothetical protein 3718156 4198946 RD1_3846 Roseobacter denitrificans OCh 114 hypothetical protein YP_683994.1 3718046 D 375451 CDS YP_683995.1 110680988 4198947 complement(3718182..3718445) 1 NC_008209.1 hypothetical protein 3718445 4198947 RD1_3847 Roseobacter denitrificans OCh 114 hypothetical protein YP_683995.1 3718182 R 375451 CDS YP_683996.1 110680989 4195421 complement(3718751..3719683) 1 NC_008209.1 hypothetical protein 3719683 4195421 RD1_3848 Roseobacter denitrificans OCh 114 hypothetical protein YP_683996.1 3718751 R 375451 CDS YP_683997.1 110680990 4195422 complement(3719683..3721383) 1 NC_008209.1 asparagine synthetase 3721383 asnO 4195422 asnO Roseobacter denitrificans OCh 114 asparagine synthetase YP_683997.1 3719683 R 375451 CDS YP_683998.1 110680991 4195423 complement(3721569..3722000) 1 NC_008209.1 hypothetical protein 3722000 4195423 RD1_3850 Roseobacter denitrificans OCh 114 hypothetical protein YP_683998.1 3721569 R 375451 CDS YP_683999.1 110680992 4195424 complement(3722004..3722291) 1 NC_008209.1 hypothetical protein 3722291 4195424 RD1_3851 Roseobacter denitrificans OCh 114 hypothetical protein YP_683999.1 3722004 R 375451 CDS YP_684000.1 110680993 4195425 complement(3722770..3724593) 1 NC_008209.1 subtilin transport ATP-binding protein 3724593 spaT 4195425 spaT Roseobacter denitrificans OCh 114 subtilin transport ATP-binding protein YP_684000.1 3722770 R 375451 CDS YP_684001.1 110680994 4195426 complement(3724712..3725389) 1 NC_008209.1 sugar transferase 3725389 4195426 RD1_3853 Roseobacter denitrificans OCh 114 sugar transferase YP_684001.1 3724712 R 375451 CDS YP_684002.1 110680995 4195427 3725887..3726576 1 NC_008209.1 DNA-binding protein 3726576 4195427 RD1_3854 Roseobacter denitrificans OCh 114 DNA-binding protein YP_684002.1 3725887 D 375451 CDS YP_684003.1 110680996 4195428 complement(3726656..3727102) 1 NC_008209.1 hypothetical protein 3727102 4195428 RD1_3855 Roseobacter denitrificans OCh 114 hypothetical protein YP_684003.1 3726656 R 375451 CDS YP_684004.1 110680997 4195429 complement(3727104..3727490) 1 NC_008209.1 hypothetical protein 3727490 4195429 RD1_3856 Roseobacter denitrificans OCh 114 hypothetical protein YP_684004.1 3727104 R 375451 CDS YP_684005.1 110680998 4195430 3727512..3727625 1 NC_008209.1 hypothetical protein 3727625 4195430 RD1_3857 Roseobacter denitrificans OCh 114 hypothetical protein YP_684005.1 3727512 D 375451 CDS YP_684006.1 110680999 4195431 complement(3727592..3729964) 1 NC_008209.1 glycine cleavage T-protein (aminomethyl transferase) family protein 3729964 4195431 RD1_3858 Roseobacter denitrificans OCh 114 glycine cleavage T-protein (aminomethyl transferase) family protein YP_684006.1 3727592 R 375451 CDS YP_684007.1 110681000 4195432 complement(3730052..3730201) 1 NC_008209.1 hypothetical protein 3730201 4195432 RD1_3859 Roseobacter denitrificans OCh 114 hypothetical protein YP_684007.1 3730052 R 375451 CDS YP_684008.1 110681001 4195433 complement(3730253..3731353) 1 NC_008209.1 racemase 3731353 4195433 RD1_3860 Roseobacter denitrificans OCh 114 racemase YP_684008.1 3730253 R 375451 CDS YP_684009.1 110681002 4195434 complement(3731365..3732981) 1 NC_008209.1 GMC family oxidoreductase 3732981 4195434 RD1_3861 Roseobacter denitrificans OCh 114 GMC family oxidoreductase YP_684009.1 3731365 R 375451 CDS YP_684010.1 110681003 4195435 complement(3732983..3733861) 1 NC_008209.1 ABC transporter permease 3733861 4195435 RD1_3862 Roseobacter denitrificans OCh 114 ABC transporter permease YP_684010.1 3732983 R 375451 CDS YP_684011.1 110681004 4195436 complement(3733807..3734700) 1 NC_008209.1 ABC transporter permease 3734700 4195436 RD1_3863 Roseobacter denitrificans OCh 114 ABC transporter permease YP_684011.1 3733807 R 375451 CDS YP_684012.1 110681005 4195437 complement(3734693..3735760) 1 NC_008209.1 spermidine/putrescine ABC transporter ATP-binding protein 3735760 4195437 RD1_3864 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter ATP-binding protein YP_684012.1 3734693 R 375451 CDS YP_684013.1 110681006 4195438 complement(3735828..3736868) 1 NC_008209.1 polyamine ABC transporter periplasmic binding protein 3736868 4195438 RD1_3865 Roseobacter denitrificans OCh 114 polyamine ABC transporter periplasmic binding protein YP_684013.1 3735828 R 375451 CDS YP_684014.1 110681007 4195439 complement(3736936..3738258) 1 NC_008209.1 oxidoreductase 3738258 4195439 RD1_3866 Roseobacter denitrificans OCh 114 oxidoreductase YP_684014.1 3736936 R 375451 CDS YP_684015.1 110681008 4195440 3738224..3739321 1 NC_008209.1 LysR family transcriptional regulator 3739321 lysR 4195440 lysR Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684015.1 3738224 D 375451 CDS YP_684016.1 110681009 4198757 3739372..3739926 1 NC_008209.1 hypothetical protein 3739926 4198757 RD1_3868 Roseobacter denitrificans OCh 114 hypothetical protein YP_684016.1 3739372 D 375451 CDS YP_684017.1 110681010 4198758 complement(3739968..3740999) 1 NC_008209.1 AraC family transcriptional regulator 3740999 4198758 RD1_3869 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_684017.1 3739968 R 375451 CDS YP_684018.1 110681011 4198759 3741118..3742131 1 NC_008209.1 hypothetical protein 3742131 4198759 RD1_3870 Roseobacter denitrificans OCh 114 hypothetical protein YP_684018.1 3741118 D 375451 CDS YP_684019.1 110681012 4198760 3742367..3743557 1 NC_008209.1 monooxygenase 3743557 4198760 RD1_3871 Roseobacter denitrificans OCh 114 monooxygenase YP_684019.1 3742367 D 375451 CDS YP_684020.1 110681013 4198761 complement(3743696..3744436) 1 NC_008209.1 oxidoreductase 3744436 4198761 RD1_3872 Roseobacter denitrificans OCh 114 oxidoreductase YP_684020.1 3743696 R 375451 CDS YP_684021.1 110681014 4198762 complement(3744433..3745281) 1 NC_008209.1 hypothetical protein 3745281 4198762 RD1_3873 Roseobacter denitrificans OCh 114 hypothetical protein YP_684021.1 3744433 R 375451 CDS YP_684022.1 110681015 4198763 3745442..3746485 1 NC_008209.1 hypothetical protein 3746485 4198763 RD1_3874 Roseobacter denitrificans OCh 114 hypothetical protein YP_684022.1 3745442 D 375451 CDS YP_684023.1 110681016 4198764 3746496..3747632 1 NC_008209.1 oxidoreductase 3747632 4198764 RD1_3876 Roseobacter denitrificans OCh 114 oxidoreductase YP_684023.1 3746496 D 375451 CDS YP_684024.1 110681017 4198765 3747583..3748293 1 NC_008209.1 hypothetical protein 3748293 4198765 RD1_3877 Roseobacter denitrificans OCh 114 hypothetical protein YP_684024.1 3747583 D 375451 CDS YP_684025.1 110681018 4198766 complement(3748315..3749259) 1 NC_008209.1 sugar kinase 3749259 4198766 RD1_3878 Roseobacter denitrificans OCh 114 sugar kinase YP_684025.1 3748315 R 375451 CDS YP_684026.1 110681019 4198767 complement(3749256..3749543) 1 NC_008209.1 hypothetical protein 3749543 4198767 RD1_3879 Roseobacter denitrificans OCh 114 hypothetical protein YP_684026.1 3749256 R 375451 CDS YP_684027.1 110681020 4198768 complement(3749540..3750634) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3750634 4198768 RD1_3880 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_684027.1 3749540 R 375451 CDS YP_684028.1 110681021 4198769 complement(3750631..3751500) 1 NC_008209.1 sugar ABC transporter permease 3751500 4198769 RD1_3881 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684028.1 3750631 R 375451 CDS YP_684029.1 110681022 4198770 complement(3751500..3752417) 1 NC_008209.1 ABC transporter permease 3752417 y4oQ 4198770 y4oQ Roseobacter denitrificans OCh 114 ABC transporter permease YP_684029.1 3751500 R 375451 CDS YP_684030.1 110681023 4198771 complement(3752490..3753950) 1 NC_008209.1 ABC transporter periplasmic substrate-binding protein 3753950 4198771 RD1_3883 Roseobacter denitrificans OCh 114 ABC transporter periplasmic substrate-binding protein YP_684030.1 3752490 R 375451 CDS YP_684031.1 110681024 4198772 complement(3754016..3755137) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3755137 4198772 RD1_3884 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_684031.1 3754016 R 375451 CDS YP_684032.1 110681025 4198773 complement(3755165..3756223) 1 NC_008209.1 endonuclease 3756223 4198773 RD1_3886 Roseobacter denitrificans OCh 114 endonuclease YP_684032.1 3755165 R 375451 CDS YP_684033.1 110681026 4198774 complement(3756253..3757275) 1 NC_008209.1 transcriptional regulator protein 3757275 4198774 RD1_3887 Roseobacter denitrificans OCh 114 transcriptional regulator protein YP_684033.1 3756253 R 375451 CDS YP_684034.1 110681027 4198775 3757369..3757803 1 NC_008209.1 hypothetical protein 3757803 4198775 RD1_3888 Roseobacter denitrificans OCh 114 hypothetical protein YP_684034.1 3757369 D 375451 CDS YP_684035.1 110681028 4198776 complement(3757822..3759579) 1 NC_008209.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 3759579 4198776 RD1_3889 Roseobacter denitrificans OCh 114 dihydroxyacetone kinase YP_684035.1 3757822 R 375451 CDS YP_684036.1 110681029 4198777 complement(3759735..3760001) 1 NC_008209.1 hypothetical protein 3760001 4198777 RD1_3890 Roseobacter denitrificans OCh 114 hypothetical protein YP_684036.1 3759735 R 375451 CDS YP_684037.1 110681030 4198778 complement(3759985..3760392) 1 NC_008209.1 helix-turn-helix domain-containing protein 3760392 4198778 RD1_3891 Roseobacter denitrificans OCh 114 helix-turn-helix domain-containing protein YP_684037.1 3759985 R 375451 CDS YP_684038.1 110681031 4198779 3760476..3761678 1 NC_008209.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 3761678 aatA 4198779 aatA Roseobacter denitrificans OCh 114 aspartate aminotransferase YP_684038.1 3760476 D 375451 CDS YP_684039.1 110681032 4198780 complement(3761790..3762887) 1 NC_008209.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3762887 ychF 4198780 ychF Roseobacter denitrificans OCh 114 GTP-dependent nucleic acid-binding protein EngD YP_684039.1 3761790 R 375451 CDS YP_684040.1 110681033 4198781 complement(3762954..3763271) 1 NC_008209.1 hypothetical protein 3763271 4198781 RD1_3894 Roseobacter denitrificans OCh 114 hypothetical protein YP_684040.1 3762954 R 375451 CDS YP_684041.1 110681034 4198782 3763301..3764092 1 NC_008209.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3764092 trpA 4198782 trpA Roseobacter denitrificans OCh 114 tryptophan synthase subunit alpha YP_684041.1 3763301 D 375451 CDS YP_684042.1 110681035 4198783 3764341..3765510 1 NC_008209.1 L-lactate dehydrogenase 3765510 4198783 RD1_3896 Roseobacter denitrificans OCh 114 L-lactate dehydrogenase YP_684042.1 3764341 D 375451 CDS YP_684043.1 110681036 4198784 complement(3765535..3766722) 1 NC_008209.1 integral membrane transport protein 3766722 4198784 RD1_3897 Roseobacter denitrificans OCh 114 integral membrane transport protein YP_684043.1 3765535 R 375451 CDS YP_684044.1 110681037 4198785 3766855..3767493 1 NC_008209.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 3767493 4198785 RD1_3898 Roseobacter denitrificans OCh 114 50S ribosomal protein L25 YP_684044.1 3766855 D 375451 CDS YP_684045.1 110681038 4198786 3767598..3768299 1 NC_008209.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3768299 pth 4198786 pth Roseobacter denitrificans OCh 114 peptidyl-tRNA hydrolase YP_684045.1 3767598 D 375451 CDS YP_684046.1 110681039 4198787 3768296..3769336 1 NC_008209.1 hypothetical protein 3769336 4198787 RD1_3901 Roseobacter denitrificans OCh 114 hypothetical protein YP_684046.1 3768296 D 375451 CDS YP_684047.1 110681040 4198788 3769336..3770523 1 NC_008209.1 6-aminohexanoate-dimer hydrolase 3770523 nylB 4198788 nylB Roseobacter denitrificans OCh 114 6-aminohexanoate-dimer hydrolase YP_684047.1 3769336 D 375451 CDS YP_684048.1 110681041 4198789 3770510..3770734 1 NC_008209.1 hypothetical protein 3770734 4198789 RD1_3904 Roseobacter denitrificans OCh 114 hypothetical protein YP_684048.1 3770510 D 375451 CDS YP_684049.1 110681042 4198790 3770951..3771589 1 NC_008209.1 hypothetical protein 3771589 4198790 RD1_3905 Roseobacter denitrificans OCh 114 hypothetical protein YP_684049.1 3770951 D 375451 CDS YP_684050.1 110681043 4198791 complement(3771597..3772829) 1 NC_008209.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3772829 trpB 4198791 trpB Roseobacter denitrificans OCh 114 tryptophan synthase subunit beta YP_684050.1 3771597 R 375451 CDS YP_684051.1 110681044 4198792 complement(3773314..3773982) 1 NC_008209.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 3773982 trpF 4198792 trpF Roseobacter denitrificans OCh 114 N-(5'-phosphoribosyl)anthranilate isomerase YP_684051.1 3773314 R 375451 CDS YP_684052.1 110681045 4198793 complement(3774023..3774373) 1 NC_008209.1 hypothetical protein 3774373 4198793 RD1_3908 Roseobacter denitrificans OCh 114 hypothetical protein YP_684052.1 3774023 R 375451 CDS YP_684053.1 110681046 4198794 complement(3774373..3774657) 1 NC_008209.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 3774657 ihfB 4198794 ihfB Roseobacter denitrificans OCh 114 integration host factor subunit beta YP_684053.1 3774373 R 375451 CDS YP_684054.1 110681047 4198795 complement(3775061..3776740) 1 NC_008209.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 3776740 rpsA 4198795 rpsA Roseobacter denitrificans OCh 114 30S ribosomal protein S1 YP_684054.1 3775061 R 375451 CDS YP_684055.1 110681048 4195134 complement(3777019..3777612) 1 NC_008209.1 hypothetical protein 3777612 4195134 RD1_3912 Roseobacter denitrificans OCh 114 hypothetical protein YP_684055.1 3777019 R 375451 CDS YP_684056.1 110681049 4195135 complement(3777679..3778296) 1 NC_008209.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 3778296 cmk 4195135 cmk Roseobacter denitrificans OCh 114 cytidylate kinase YP_684056.1 3777679 R 375451 CDS YP_684057.1 110681050 4195136 complement(3778304..3779656) 1 NC_008209.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 3779656 aroA 4195136 aroA Roseobacter denitrificans OCh 114 3-phosphoshikimate 1-carboxyvinyltransferase YP_684057.1 3778304 R 375451 CDS YP_684058.1 110681051 4195137 complement(3779740..3780441) 1 NC_008209.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3780441 trmB 4195137 trmB Roseobacter denitrificans OCh 114 tRNA (guanine-N(7)-)-methyltransferase YP_684058.1 3779740 R 375451 CDS YP_684059.1 110681052 4195138 complement(3780556..3781737) 1 NC_008209.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3781737 metK 4195138 metK Roseobacter denitrificans OCh 114 S-adenosylmethionine synthetase YP_684059.1 3780556 R 375451 CDS YP_684060.1 110681053 4195139 complement(3781822..3783312) 1 NC_008209.1 apolipoprotein N-acyltransferase 3783312 cutE 4195139 cutE Roseobacter denitrificans OCh 114 apolipoprotein N-acyltransferase YP_684060.1 3781822 R 375451 CDS YP_684061.1 110681054 4195140 complement(3783348..3784244) 1 NC_008209.1 hemolysin-like protein 3784244 4195140 RD1_3918 Roseobacter denitrificans OCh 114 hemolysin-like protein YP_684061.1 3783348 R 375451 CDS YP_684062.1 110681055 4195141 complement(3784283..3784783) 1 NC_008209.1 hypothetical protein 3784783 4195141 RD1_3919 Roseobacter denitrificans OCh 114 hypothetical protein YP_684062.1 3784283 R 375451 CDS YP_684063.1 110681056 4195142 complement(3784820..3785839) 1 NC_008209.1 phosphate starvation inducible protein 3785839 phoH 4195142 phoH Roseobacter denitrificans OCh 114 phosphate starvation inducible protein YP_684063.1 3784820 R 375451 CDS YP_684064.1 110681057 4195143 complement(3785952..3787277) 1 NC_008209.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3787277 miaB 4195143 miaB Roseobacter denitrificans OCh 114 (dimethylallyl)adenosine tRNA methylthiotransferase YP_684064.1 3785952 R 375451 CDS YP_684065.1 110681058 4195144 complement(3787422..3787841) 1 NC_008209.1 FUR family transcriptional regulator 3787841 4195144 RD1_3922 Roseobacter denitrificans OCh 114 FUR family transcriptional regulator YP_684065.1 3787422 R 375451 CDS YP_684066.2 162139370 4195145 3788036..3788545 1 NC_008209.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3788545 fabA 4195145 fabA Roseobacter denitrificans OCh 114 3-hydroxydecanoyl-ACP dehydratase YP_684066.2 3788036 D 375451 CDS YP_684067.1 110681060 4195146 3788577..3789806 1 NC_008209.1 3-oxoacyl-ACP synthase 3789806 fabB 4195146 fabB Roseobacter denitrificans OCh 114 3-oxoacyl-ACP synthase YP_684067.1 3788577 D 375451 CDS YP_684068.1 110681061 4195147 3789816..3790607 1 NC_008209.1 enoyl-ACP reductase 3790607 fabI 4195147 fabI Roseobacter denitrificans OCh 114 enoyl-ACP reductase YP_684068.1 3789816 D 375451 CDS YP_684069.1 110681062 4195148 3790806..3790919 1 NC_008209.1 hypothetical protein 3790919 4195148 RD1_3926 Roseobacter denitrificans OCh 114 hypothetical protein YP_684069.1 3790806 D 375451 CDS YP_684070.1 110681063 4195149 complement(3790832..3791266) 1 NC_008209.1 hypothetical protein 3791266 4195149 RD1_3927 Roseobacter denitrificans OCh 114 hypothetical protein YP_684070.1 3790832 R 375451 CDS YP_684071.1 110681064 4195150 complement(3791401..3791835) 1 NC_008209.1 FKBP-type peptidyl-prolyl cis-trans isomerase 3791835 slyD 4195150 slyD Roseobacter denitrificans OCh 114 FKBP-type peptidyl-prolyl cis-trans isomerase YP_684071.1 3791401 R 375451 CDS YP_684072.1 110681065 4195151 3792019..3792705 1 NC_008209.1 (S)-2-haloacid dehalogenase 3792705 deh 4195151 deh Roseobacter denitrificans OCh 114 (S)-2-haloacid dehalogenase YP_684072.1 3792019 D 375451 CDS YP_684073.1 110681066 4195152 3792705..3793529 1 NC_008209.1 hydrolase 3793529 4195152 RD1_3930 Roseobacter denitrificans OCh 114 hydrolase YP_684073.1 3792705 D 375451 CDS YP_684074.1 110681067 4195966 3793526..3794509 1 NC_008209.1 threonine dehydratase 3794509 4195966 RD1_3931 Roseobacter denitrificans OCh 114 threonine dehydratase YP_684074.1 3793526 D 375451 CDS YP_684075.1 110681068 4195967 3794550..3795353 1 NC_008209.1 3-oxoadipate enol-lactonase 3795353 pcaD 4195967 pcaD Roseobacter denitrificans OCh 114 3-oxoadipate enol-lactonase YP_684075.1 3794550 D 375451 CDS YP_684076.1 110681069 4195968 3795346..3796056 1 NC_008209.1 esterase EstC 3796056 estC 4195968 estC Roseobacter denitrificans OCh 114 esterase EstC YP_684076.1 3795346 D 375451 CDS YP_684077.1 110681070 4195969 3796060..3797391 1 NC_008209.1 3-carboxy-cis,cis-muconate cycloisomerase 3797391 pcaB 4195969 pcaB Roseobacter denitrificans OCh 114 3-carboxy-cis,cis-muconate cycloisomerase YP_684077.1 3796060 D 375451 CDS YP_684078.1 110681071 4195970 3797388..3798593 1 NC_008209.1 tetracycline resistance protein 3798593 tetA 4195970 tetA Roseobacter denitrificans OCh 114 tetracycline resistance protein YP_684078.1 3797388 D 375451 CDS YP_684079.1 110681072 4195971 3798695..3799786 1 NC_008209.1 dehydrogenase 3799786 4195971 RD1_3937 Roseobacter denitrificans OCh 114 dehydrogenase YP_684079.1 3798695 D 375451 CDS YP_684080.1 110681073 4195972 3799812..3801053 1 NC_008209.1 racemase 3801053 4195972 RD1_3939 Roseobacter denitrificans OCh 114 racemase YP_684080.1 3799812 D 375451 CDS YP_684081.1 110681074 4195973 complement(3801062..3801757) 1 NC_008209.1 hypothetical protein 3801757 4195973 RD1_3940 Roseobacter denitrificans OCh 114 hypothetical protein YP_684081.1 3801062 R 375451 CDS YP_684082.1 110681075 4195974 complement(3801757..3802881) 1 NC_008209.1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3802881 metE 4195974 metE Roseobacter denitrificans OCh 114 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_684082.1 3801757 R 375451 CDS YP_684083.1 110681076 4195975 complement(3802927..3803901) 1 NC_008209.1 cupin domain-containing protein 3803901 4195975 RD1_3942 Roseobacter denitrificans OCh 114 cupin domain-containing protein YP_684083.1 3802927 R 375451 CDS YP_684084.1 110681077 4195976 complement(3803938..3804906) 1 NC_008209.1 hypothetical protein 3804906 4195976 RD1_3943 Roseobacter denitrificans OCh 114 hypothetical protein YP_684084.1 3803938 R 375451 CDS YP_684085.1 110681078 4195977 complement(3804903..3805919) 1 NC_008209.1 LacI family transcriptional regulator 3805919 4195977 RD1_3944 Roseobacter denitrificans OCh 114 LacI family transcriptional regulator YP_684085.1 3804903 R 375451 CDS YP_684086.1 110681079 4195978 complement(3805936..3806697) 1 NC_008209.1 dehydrogenase 3806697 4195978 RD1_3945 Roseobacter denitrificans OCh 114 dehydrogenase YP_684086.1 3805936 R 375451 CDS YP_684087.1 110681080 4195979 complement(3806694..3807743) 1 NC_008209.1 hypothetical protein 3807743 4195979 RD1_3946 Roseobacter denitrificans OCh 114 hypothetical protein YP_684087.1 3806694 R 375451 CDS YP_684088.1 110681081 4195980 complement(3807757..3807894) 1 NC_008209.1 hypothetical protein 3807894 4195980 RD1_3947 Roseobacter denitrificans OCh 114 hypothetical protein YP_684088.1 3807757 R 375451 CDS YP_684089.1 110681082 4195981 complement(3807901..3809229) 1 NC_008209.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3809229 hisD 4195981 hisD Roseobacter denitrificans OCh 114 histidinol dehydrogenase YP_684089.1 3807901 R 375451 CDS YP_684090.1 110681083 4195982 complement(3809242..3809772) 1 NC_008209.1 hypothetical protein 3809772 4195982 RD1_3949 Roseobacter denitrificans OCh 114 hypothetical protein YP_684090.1 3809242 R 375451 CDS YP_684091.1 110681084 4195983 complement(3809801..3810958) 1 NC_008209.1 sugar ABC transporter permease 3810958 4195983 RD1_3950 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684091.1 3809801 R 375451 CDS YP_684092.1 110681085 4195984 complement(3810958..3811983) 1 NC_008209.1 sugar-ABC transporter permease 3811983 4195984 RD1_3951 Roseobacter denitrificans OCh 114 sugar-ABC transporter permease YP_684092.1 3810958 R 375451 CDS YP_684093.1 110681086 4195985 complement(3812108..3813328) 1 NC_008209.1 sugar ABC transporter substrate-binding domain 3813328 4195985 RD1_3953 Roseobacter denitrificans OCh 114 sugar ABC transporter substrate-binding domain YP_684093.1 3812108 R 375451 CDS YP_684094.1 110681087 4195770 complement(3813413..3814468) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3814468 4195770 RD1_3954 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_684094.1 3813413 R 375451 CDS YP_684095.1 110681088 4195771 3814551..3814670 1 NC_008209.1 hypothetical protein 3814670 4195771 RD1_3955 Roseobacter denitrificans OCh 114 hypothetical protein YP_684095.1 3814551 D 375451 CDS YP_684096.1 110681089 4195772 complement(3814767..3815990) 1 NC_008209.1 glutaryl-CoA dehydrogenase 3815990 gcdH 4195772 gcdH Roseobacter denitrificans OCh 114 glutaryl-CoA dehydrogenase YP_684096.1 3814767 R 375451 CDS YP_684097.1 110681090 4195773 3816098..3816985 1 NC_008209.1 LysR family transcriptional regulator 3816985 4195773 RD1_3957 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684097.1 3816098 D 375451 CDS YP_684098.1 110681091 4195774 complement(3817240..3817905) 1 NC_008209.1 hypothetical protein 3817905 4195774 RD1_3958 Roseobacter denitrificans OCh 114 hypothetical protein YP_684098.1 3817240 R 375451 CDS YP_684099.1 110681092 4195775 complement(3818009..3819565) 1 NC_008209.1 5'-nucleotidase 3819565 4195775 RD1_3959 Roseobacter denitrificans OCh 114 5'-nucleotidase YP_684099.1 3818009 R 375451 CDS YP_684100.1 110681093 4195776 3819690..3820040 1 NC_008209.1 hypothetical protein 3820040 4195776 RD1_3960 Roseobacter denitrificans OCh 114 hypothetical protein YP_684100.1 3819690 D 375451 CDS YP_684101.1 110681094 4195777 3820037..3821089 1 NC_008209.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 3821089 4195777 RD1_3961 Roseobacter denitrificans OCh 114 dihydroorotate dehydrogenase 2 YP_684101.1 3820037 D 375451 CDS YP_684102.1 110681095 4195778 complement(3821086..3822426) 1 NC_008209.1 DNA-damage-inducible protein 3822426 dinF 4195778 dinF Roseobacter denitrificans OCh 114 DNA-damage-inducible protein YP_684102.1 3821086 R 375451 CDS YP_684103.1 110681096 4195779 complement(3822416..3822934) 1 NC_008209.1 hypothetical protein 3822934 4195779 RD1_3963 Roseobacter denitrificans OCh 114 hypothetical protein YP_684103.1 3822416 R 375451 CDS YP_684104.1 110681097 4195780 complement(3822931..3823353) 1 NC_008209.1 thioesterase family protein 3823353 4195780 RD1_3964 Roseobacter denitrificans OCh 114 thioesterase family protein YP_684104.1 3822931 R 375451 CDS YP_684105.1 110681098 4195781 3823483..3823854 1 NC_008209.1 transcriptional regulator 3823854 4195781 RD1_3965 Roseobacter denitrificans OCh 114 transcriptional regulator YP_684105.1 3823483 D 375451 CDS YP_684106.1 110681099 4195782 complement(3823851..3824096) 1 NC_008209.1 hypothetical protein 3824096 4195782 RD1_3966 Roseobacter denitrificans OCh 114 hypothetical protein YP_684106.1 3823851 R 375451 CDS YP_684107.1 110681100 4195783 complement(3824172..3824918) 1 NC_008209.1 LuxR family transcriptional regulator 3824918 luxR 4195783 luxR Roseobacter denitrificans OCh 114 LuxR family transcriptional regulator YP_684107.1 3824172 R 375451 CDS YP_684108.1 110681101 4195784 3825126..3825539 1 NC_008209.1 MerR family transcriptional regulator 3825539 4195784 RD1_3968 Roseobacter denitrificans OCh 114 MerR family transcriptional regulator YP_684108.1 3825126 D 375451 CDS YP_684109.1 110681102 4195785 3825580..3827361 1 NC_008209.1 acyl-CoA dehydrogenase 3827361 4195785 RD1_3969 Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_684109.1 3825580 D 375451 CDS YP_684110.1 110681103 4195786 3827487..3828635 1 NC_008209.1 acyl-CoA dehydrogenase 3828635 fadE 4195786 fadE Roseobacter denitrificans OCh 114 acyl-CoA dehydrogenase YP_684110.1 3827487 D 375451 CDS YP_684111.1 110681104 4195787 3828677..3829315 1 NC_008209.1 glutathione S-transferase 3829315 gst 4195787 gst Roseobacter denitrificans OCh 114 glutathione S-transferase YP_684111.1 3828677 D 375451 CDS YP_684112.1 110681105 4195788 3829356..3830567 1 NC_008209.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3830567 fadA 4195788 fadA Roseobacter denitrificans OCh 114 acetyl-CoA acetyltransferase YP_684112.1 3829356 D 375451 CDS YP_684113.1 110681106 4195441 3830600..3832798 1 NC_008209.1 fatty acid oxidation complex alpha subunit 3832798 fadJ 4195441 fadJ Roseobacter denitrificans OCh 114 fatty acid oxidation complex alpha subunit YP_684113.1 3830600 D 375451 CDS YP_684114.1 110681107 4195442 3833041..3834663 1 NC_008209.1 AMP-binding protein 3834663 4195442 RD1_3974 Roseobacter denitrificans OCh 114 AMP-binding protein YP_684114.1 3833041 D 375451 CDS YP_684115.1 110681108 4195443 3834717..3835784 1 NC_008209.1 hypothetical protein 3835784 4195443 RD1_3975 Roseobacter denitrificans OCh 114 hypothetical protein YP_684115.1 3834717 D 375451 CDS YP_684116.1 110681109 4195444 complement(3835792..3836424) 1 NC_008209.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 3836424 upp 4195444 upp Roseobacter denitrificans OCh 114 uracil phosphoribosyltransferase YP_684116.1 3835792 R 375451 CDS YP_684117.1 110681110 4195445 complement(3836449..3837672) 1 NC_008209.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 3837672 deoB 4195445 deoB Roseobacter denitrificans OCh 114 phosphopentomutase YP_684117.1 3836449 R 375451 CDS YP_684118.1 110681111 4195446 complement(3837672..3838982) 1 NC_008209.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 3838982 deoA 4195446 deoA Roseobacter denitrificans OCh 114 thymidine phosphorylase YP_684118.1 3837672 R 375451 CDS YP_684119.1 110681112 4195447 complement(3838984..3839373) 1 NC_008209.1 cytidine deaminase 3839373 cdd 4195447 cdd Roseobacter denitrificans OCh 114 cytidine deaminase YP_684119.1 3838984 R 375451 CDS YP_684120.1 110681113 4195448 complement(3839452..3840543) 1 NC_008209.1 cupin domain-containing protein 3840543 4195448 RD1_3981 Roseobacter denitrificans OCh 114 cupin domain-containing protein YP_684120.1 3839452 R 375451 CDS YP_684121.1 110681114 4195449 complement(3840540..3841253) 1 NC_008209.1 hypothetical protein 3841253 4195449 RD1_3982 Roseobacter denitrificans OCh 114 hypothetical protein YP_684121.1 3840540 R 375451 CDS YP_684122.1 110681115 4195451 complement(3843724..3844371) 1 NC_008209.1 hypothetical protein 3844371 4195451 RD1_3985 Roseobacter denitrificans OCh 114 hypothetical protein YP_684122.1 3843724 R 375451 CDS YP_684123.1 110681116 4195452 3844445..3846337 1 NC_008209.1 propionate--CoA ligase 3846337 prpE 4195452 prpE Roseobacter denitrificans OCh 114 propionate--CoA ligase YP_684123.1 3844445 D 375451 CDS YP_684124.1 110681117 4195453 complement(3846508..3846717) 1 NC_008209.1 stress response protein CsbD 3846717 csbD 4195453 csbD Roseobacter denitrificans OCh 114 stress response protein CsbD YP_684124.1 3846508 R 375451 CDS YP_684125.1 110681118 4195454 complement(3846932..3848140) 1 NC_008209.1 coenzyme F420 hydrogenase, beta subunit 3848140 4195454 RD1_3988 Roseobacter denitrificans OCh 114 coenzyme F420 hydrogenase, beta subunit YP_684125.1 3846932 R 375451 CDS YP_684126.1 110681119 4195455 complement(3848140..3848901) 1 NC_008209.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3848901 ppnK 4195455 ppnK Roseobacter denitrificans OCh 114 inorganic polyphosphate/ATP-NAD kinase YP_684126.1 3848140 R 375451 CDS YP_684127.1 110681120 4195456 3849125..3850420 1 NC_008209.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3850420 glyA 4195456 glyA Roseobacter denitrificans OCh 114 serine hydroxymethyltransferase YP_684127.1 3849125 D 375451 CDS YP_684128.1 110681121 4195457 complement(3850464..3851747) 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 3851747 dctM 4195457 dctM Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_684128.1 3850464 R 375451 CDS YP_684129.1 110681122 4195458 complement(3851757..3852284) 1 NC_008209.1 C4-dicarboxylate ABC transporter permease 3852284 4195458 RD1_3993 Roseobacter denitrificans OCh 114 C4-dicarboxylate ABC transporter permease YP_684129.1 3851757 R 375451 CDS YP_684130.1 110681123 4195459 complement(3852362..3853342) 1 NC_008209.1 TRAP dicarboxylate ABC transporter substrate-binding protein 3853342 dctP 4195459 dctP Roseobacter denitrificans OCh 114 TRAP dicarboxylate ABC transporter substrate-binding protein YP_684130.1 3852362 R 375451 CDS YP_684131.1 110681124 4195460 complement(3853616..3853927) 1 NC_008209.1 pectin degradation protein 3853927 kdgF 4195460 kdgF Roseobacter denitrificans OCh 114 pectin degradation protein YP_684131.1 3853616 R 375451 CDS YP_684132.1 110681125 4195986 complement(3853948..3854691) 1 NC_008209.1 oxidoreductase 3854691 4195986 RD1_3996 Roseobacter denitrificans OCh 114 oxidoreductase YP_684132.1 3853948 R 375451 CDS YP_684133.1 110681126 4195987 3854873..3855559 1 NC_008209.1 GntR family transcriptional regulator 3855559 4195987 RD1_3997 Roseobacter denitrificans OCh 114 GntR family transcriptional regulator YP_684133.1 3854873 D 375451 CDS YP_684134.1 110681127 4195988 3855818..3857464 1 NC_008209.1 iron-regulated protein frpC 3857464 frpC 4195988 frpC Roseobacter denitrificans OCh 114 iron-regulated protein frpC YP_684134.1 3855818 D 375451 CDS YP_684135.1 110681128 4195989 3857703..3858239 1 NC_008209.1 RNA polymerase ECF-type sigma factor 3858239 4195989 RD1_3999 Roseobacter denitrificans OCh 114 RNA polymerase ECF-type sigma factor YP_684135.1 3857703 D 375451 CDS YP_684136.1 110681129 4195990 complement(3858277..3858843) 1 NC_008209.1 hypothetical protein 3858843 4195990 RD1_4000 Roseobacter denitrificans OCh 114 hypothetical protein YP_684136.1 3858277 R 375451 CDS YP_684137.1 110681130 4195991 3859192..3860187 1 NC_008209.1 subtilisin carlsberg 3860187 apr 4195991 apr Roseobacter denitrificans OCh 114 subtilisin carlsberg YP_684137.1 3859192 D 375451 CDS YP_684138.1 110681131 4195992 complement(3860198..3861295) 1 NC_008209.1 zinc ABC transporter periplasmic zinc-binding protein 3861295 znuA 4195992 znuA Roseobacter denitrificans OCh 114 zinc ABC transporter periplasmic zinc-binding protein YP_684138.1 3860198 R 375451 CDS YP_684139.1 110681132 4195993 3861289..3861804 1 NC_008209.1 zinc uptake regulation protein 3861804 zur 4195993 zur Roseobacter denitrificans OCh 114 zinc uptake regulation protein YP_684139.1 3861289 D 375451 CDS YP_684140.1 110681133 4195994 3861801..3862568 1 NC_008209.1 zinc ABC transporter ATP-binding protein 3862568 znuC 4195994 znuC Roseobacter denitrificans OCh 114 zinc ABC transporter ATP-binding protein YP_684140.1 3861801 D 375451 CDS YP_684141.1 110681134 4195995 3862568..3863362 1 NC_008209.1 zinc ABC transporter permease 3863362 znuB 4195995 znuB Roseobacter denitrificans OCh 114 zinc ABC transporter permease YP_684141.1 3862568 D 375451 CDS YP_684142.1 110681135 4195996 3863570..3864370 1 NC_008209.1 hypothetical protein 3864370 4195996 RD1_4008 Roseobacter denitrificans OCh 114 hypothetical protein YP_684142.1 3863570 D 375451 CDS YP_684143.1 110681136 4195997 3864490..3865224 1 NC_008209.1 proteasome-type protease 3865224 4195997 RD1_4009 Roseobacter denitrificans OCh 114 proteasome-type protease YP_684143.1 3864490 D 375451 CDS YP_684144.1 110681137 4195999 complement(3865451..3866026) 1 NC_008209.1 hypothetical protein 3866026 4195999 RD1_4011 Roseobacter denitrificans OCh 114 hypothetical protein YP_684144.1 3865451 R 375451 CDS YP_684145.1 110681138 4196000 complement(3866170..3867345) 1 NC_008209.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3867345 tuf 4196000 tuf Roseobacter denitrificans OCh 114 elongation factor Tu YP_684145.1 3866170 R 375451 CDS YP_684146.1 110681139 4196001 complement(3867423..3869540) 1 NC_008209.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3869540 fusA 4196001 fusA Roseobacter denitrificans OCh 114 elongation factor G YP_684146.1 3867423 R 375451 CDS YP_684147.1 110681140 4196002 complement(3869606..3870076) 1 NC_008209.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3870076 rpsG 4196002 rpsG Roseobacter denitrificans OCh 114 30S ribosomal protein S7 YP_684147.1 3869606 R 375451 CDS YP_684148.1 110681141 4196003 complement(3870089..3870460) 1 NC_008209.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3870460 rpsL 4196003 rpsL Roseobacter denitrificans OCh 114 30S ribosomal protein S12 YP_684148.1 3870089 R 375451 CDS YP_684149.1 110681142 4195401 complement(3870822..3871691) 1 NC_008209.1 hypothetical protein 3871691 4195401 RD1_4016 Roseobacter denitrificans OCh 114 hypothetical protein YP_684149.1 3870822 R 375451 CDS YP_684150.1 110681143 4195402 3871835..3871927 1 NC_008209.1 hypothetical protein 3871927 4195402 RD1_4017 Roseobacter denitrificans OCh 114 hypothetical protein YP_684150.1 3871835 D 375451 CDS YP_684151.1 110681144 4195403 complement(3871950..3876194) 1 NC_008209.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3876194 rpoC 4195403 rpoC Roseobacter denitrificans OCh 114 DNA-directed RNA polymerase subunit beta' YP_684151.1 3871950 R 375451 CDS YP_684152.1 110681145 4195404 complement(3876495..3880631) 1 NC_008209.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3880631 rpoB 4195404 rpoB Roseobacter denitrificans OCh 114 DNA-directed RNA polymerase subunit beta YP_684152.1 3876495 R 375451 CDS YP_684153.1 110681146 4195405 complement(3880888..3881259) 1 NC_008209.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3881259 rplL 4195405 rplL Roseobacter denitrificans OCh 114 50S ribosomal protein L7/L12 YP_684153.1 3880888 R 375451 CDS YP_684154.1 110681147 4195406 complement(3881334..3881849) 1 NC_008209.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3881849 rplJ 4195406 rplJ Roseobacter denitrificans OCh 114 50S ribosomal protein L10 YP_684154.1 3881334 R 375451 CDS YP_684155.1 110681148 4195407 complement(3882089..3882787) 1 NC_008209.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3882787 rplA 4195407 rplA Roseobacter denitrificans OCh 114 50S ribosomal protein L1 YP_684155.1 3882089 R 375451 CDS YP_684156.1 110681149 4195408 complement(3882789..3883214) 1 NC_008209.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3883214 rplK 4195408 rplK Roseobacter denitrificans OCh 114 50S ribosomal protein L11 YP_684156.1 3882789 R 375451 CDS YP_684157.1 110681150 4195409 complement(3883318..3883893) 1 NC_008209.1 transcription antitermination protein NusG 3883893 nusG 4195409 nusG Roseobacter denitrificans OCh 114 transcription antitermination protein NusG YP_684157.1 3883318 R 375451 CDS YP_684158.1 110681151 4195410 complement(3884057..3884254) 1 NC_008209.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3884254 secE 4195410 secE Roseobacter denitrificans OCh 114 preprotein translocase subunit SecE YP_684158.1 3884057 R 375451 CDS YP_684159.1 110681152 4195411 3884199..3884291 1 NC_008209.1 hypothetical protein 3884291 4195411 RD1_4026 Roseobacter denitrificans OCh 114 hypothetical protein YP_684159.1 3884199 D 375451 CDS YP_684160.1 110681153 4195412 complement(3884927..3887284) 1 NC_008209.1 hypothetical protein 3887284 4195412 RD1_4027 Roseobacter denitrificans OCh 114 hypothetical protein YP_684160.1 3884927 R 375451 CDS YP_684161.1 110681154 4195413 3887541..3887636 1 NC_008209.1 hypothetical protein 3887636 4195413 RD1_4028 Roseobacter denitrificans OCh 114 hypothetical protein YP_684161.1 3887541 D 375451 CDS YP_684162.1 110681155 4195414 complement(3887586..3888536) 1 NC_008209.1 hypothetical protein 3888536 4195414 RD1_4029 Roseobacter denitrificans OCh 114 hypothetical protein YP_684162.1 3887586 R 375451 CDS YP_684163.1 110681156 4195415 complement(3888545..3890200) 1 NC_008209.1 Fe-ABC transporter permease 3890200 4195415 RD1_4030 Roseobacter denitrificans OCh 114 Fe-ABC transporter permease YP_684163.1 3888545 R 375451 CDS YP_684164.1 110681157 4195416 complement(3890197..3891279) 1 NC_008209.1 ABC transporter ATP-binding protein 3891279 4195416 RD1_4031 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_684164.1 3890197 R 375451 CDS YP_684165.1 110681158 4195417 complement(3891339..3892322) 1 NC_008209.1 iron ABC transporter substrate-binding protein 3892322 4195417 RD1_4033 Roseobacter denitrificans OCh 114 iron ABC transporter substrate-binding protein YP_684165.1 3891339 R 375451 CDS YP_684166.1 110681159 4195418 complement(3892916..3893842) 1 NC_008209.1 type I secretion protein 3893842 4195418 RD1_4034 Roseobacter denitrificans OCh 114 type I secretion protein YP_684166.1 3892916 R 375451 CDS YP_684167.1 110681160 4195419 complement(3894117..3894725) 1 NC_008209.1 hypothetical protein 3894725 4195419 RD1_4036 Roseobacter denitrificans OCh 114 hypothetical protein YP_684167.1 3894117 R 375451 CDS YP_684168.1 110681161 4195420 3894856..3895332 1 NC_008209.1 ECF subfamily RNA polymerase sigma factor 3895332 rpoE3 4195420 rpoE3 Roseobacter denitrificans OCh 114 ECF subfamily RNA polymerase sigma factor YP_684168.1 3894856 D 375451 CDS YP_684169.1 110681162 4198910 3895329..3896093 1 NC_008209.1 hypothetical protein 3896093 4198910 RD1_4038 Roseobacter denitrificans OCh 114 hypothetical protein YP_684169.1 3895329 D 375451 CDS YP_684170.1 110681163 4198911 complement(3896759..3898600) 1 NC_008209.1 hypothetical protein 3898600 4198911 RD1_4039 Roseobacter denitrificans OCh 114 hypothetical protein YP_684170.1 3896759 R 375451 CDS YP_684171.1 110681164 4198912 complement(3898626..3898961) 1 NC_008209.1 transposition protein 3898961 4198912 RD1_4040 Roseobacter denitrificans OCh 114 transposition protein YP_684171.1 3898626 R 375451 CDS YP_684172.1 110681165 4198913 complement(3899046..3899468) 1 NC_008209.1 transposition protein 3899468 4198913 RD1_4041 Roseobacter denitrificans OCh 114 transposition protein YP_684172.1 3899046 R 375451 CDS YP_684173.1 110681166 4198914 complement(3899577..3901361) 1 NC_008209.1 transposase 3901361 4198914 RD1_4042 Roseobacter denitrificans OCh 114 transposase YP_684173.1 3899577 R 375451 CDS YP_684174.1 110681167 4198915 complement(3901762..3902439) 1 NC_008209.1 hypothetical protein 3902439 4198915 RD1_4043 Roseobacter denitrificans OCh 114 hypothetical protein YP_684174.1 3901762 R 375451 CDS YP_684175.1 110681168 4198916 3902841..3903158 1 NC_008209.1 hypothetical protein 3903158 4198916 RD1_4044 Roseobacter denitrificans OCh 114 hypothetical protein YP_684175.1 3902841 D 375451 CDS YP_684176.1 110681169 4198917 3904066..3904254 1 NC_008209.1 hypothetical protein 3904254 4198917 RD1_4045 Roseobacter denitrificans OCh 114 hypothetical protein YP_684176.1 3904066 D 375451 CDS YP_684177.1 110681170 4198918 complement(3905208..3906758) 1 NC_008209.1 hypothetical protein 3906758 4198918 RD1_4046 Roseobacter denitrificans OCh 114 hypothetical protein YP_684177.1 3905208 R 375451 CDS YP_684178.1 110681171 4198919 complement(3906758..3907726) 1 NC_008209.1 transposition protein 3907726 4198919 RD1_4047 Roseobacter denitrificans OCh 114 transposition protein YP_684178.1 3906758 R 375451 CDS YP_684179.1 110681172 4198920 complement(3907729..3909936) 1 NC_008209.1 transposase 3909936 4198920 RD1_4048 Roseobacter denitrificans OCh 114 transposase YP_684179.1 3907729 R 375451 CDS YP_684180.1 110681173 4198921 complement(3910030..3910191) 1 NC_008209.1 hypothetical protein 3910191 4198921 RD1_4050 Roseobacter denitrificans OCh 114 hypothetical protein YP_684180.1 3910030 R 375451 CDS YP_684181.1 110681174 4198922 complement(3910318..3911124) 1 NC_008209.1 hypothetical protein 3911124 4198922 RD1_4051 Roseobacter denitrificans OCh 114 hypothetical protein YP_684181.1 3910318 R 375451 CDS YP_684182.1 110681175 4198923 3911106..3911207 1 NC_008209.1 hypothetical protein 3911207 4198923 RD1_4052 Roseobacter denitrificans OCh 114 hypothetical protein YP_684182.1 3911106 D 375451 CDS YP_684183.1 110681176 4198924 3912658..3914691 1 NC_008209.1 type I restriction-modification system DNA methylase 3914691 hsdM 4198924 hsdM Roseobacter denitrificans OCh 114 type I restriction-modification system DNA methylase YP_684183.1 3912658 D 375451 CDS YP_684184.1 110681177 4198925 3914688..3915932 1 NC_008209.1 type I restriction-mod 3915932 4198925 RD1_4054 Roseobacter denitrificans OCh 114 type I restriction-mod YP_684184.1 3914688 D 375451 CDS YP_684185.1 110681178 4198926 3915929..3919132 1 NC_008209.1 type I restriction-modification system endonuclease 3919132 hsdR 4198926 hsdR Roseobacter denitrificans OCh 114 type I restriction-modification system endonuclease YP_684185.1 3915929 D 375451 CDS YP_684186.1 110681179 4198927 3919394..3919495 1 NC_008209.1 hypothetical protein 3919495 4198927 RD1_4056 Roseobacter denitrificans OCh 114 hypothetical protein YP_684186.1 3919394 D 375451 CDS YP_684187.1 110681180 4198928 complement(3919942..3920343) 1 NC_008209.1 hypothetical protein 3920343 4198928 RD1_4057 Roseobacter denitrificans OCh 114 hypothetical protein YP_684187.1 3919942 R 375451 CDS YP_684188.1 110681181 4195323 complement(3920355..3921455) 1 NC_008209.1 hypothetical protein 3921455 4195323 RD1_4058 Roseobacter denitrificans OCh 114 hypothetical protein YP_684188.1 3920355 R 375451 CDS YP_684189.1 110681182 4195324 complement(3922652..3923752) 1 NC_008209.1 Lon protease 3923752 lon 4195324 lon Roseobacter denitrificans OCh 114 Lon protease YP_684189.1 3922652 R 375451 CDS YP_684190.1 110681183 4195325 3923730..3923822 1 NC_008209.1 hypothetical protein 3923822 4195325 RD1_4060 Roseobacter denitrificans OCh 114 hypothetical protein YP_684190.1 3923730 D 375451 CDS YP_684191.1 110681184 4195326 complement(3924082..3926580) 1 NC_008209.1 ribonucleotide reductase 3926580 4195326 RD1_4061 Roseobacter denitrificans OCh 114 ribonucleotide reductase YP_684191.1 3924082 R 375451 CDS YP_684192.1 110681185 4195327 3926866..3927285 1 NC_008209.1 hypothetical protein 3927285 4195327 RD1_4062 Roseobacter denitrificans OCh 114 hypothetical protein YP_684192.1 3926866 D 375451 CDS YP_684193.1 110681186 4195328 complement(3927292..3927984) 1 NC_008209.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 3927984 hisG 4195328 hisG Roseobacter denitrificans OCh 114 ATP phosphoribosyltransferase YP_684193.1 3927292 R 375451 CDS YP_684194.1 110681187 4195329 complement(3927981..3929063) 1 NC_008209.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 3929063 hisZ 4195329 hisZ Roseobacter denitrificans OCh 114 ATP phosphoribosyltransferase YP_684194.1 3927981 R 375451 CDS YP_684195.1 110681188 4195330 complement(3929060..3930619) 1 NC_008209.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3930619 hisS 4195330 hisS Roseobacter denitrificans OCh 114 histidyl-tRNA synthetase YP_684195.1 3929060 R 375451 CDS YP_684196.1 110681189 4195331 3930734..3930928 1 NC_008209.1 hypothetical protein 3930928 4195331 RD1_4066 Roseobacter denitrificans OCh 114 hypothetical protein YP_684196.1 3930734 D 375451 CDS YP_684197.1 110681190 4195332 complement(3930970..3934521) 1 NC_008209.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3934521 dnaE 4195332 dnaE Roseobacter denitrificans OCh 114 DNA polymerase III subunit alpha YP_684197.1 3930970 R 375451 CDS YP_684198.1 110681191 4195333 3934745..3936118 1 NC_008209.1 xanthine dehydrogenase, A subunit 3936118 xdhA 4195333 xdhA Roseobacter denitrificans OCh 114 xanthine dehydrogenase, A subunit YP_684198.1 3934745 D 375451 CDS YP_684199.1 110681192 4195334 3936115..3938412 1 NC_008209.1 xanthine dehydrogenase subunit B 3938412 xdhB 4195334 xdhB Roseobacter denitrificans OCh 114 xanthine dehydrogenase subunit B YP_684199.1 3936115 D 375451 CDS YP_684200.1 110681193 4195335 3938412..3939344 1 NC_008209.1 xanthine dehydrogenase accessory factor 3939344 xdhC 4195335 xdhC Roseobacter denitrificans OCh 114 xanthine dehydrogenase accessory factor YP_684200.1 3938412 D 375451 CDS YP_684201.1 110681194 4195336 3939341..3940855 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3940855 4195336 RD1_4071 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_684201.1 3939341 D 375451 CDS YP_684202.1 110681195 4195337 3940897..3941979 1 NC_008209.1 sugar ABC transporter permease 3941979 4195337 RD1_4072 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684202.1 3940897 D 375451 CDS YP_684203.1 110681196 4195338 3941979..3942899 1 NC_008209.1 sugar ABC transporter permease 3942899 4195338 RD1_4073 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684203.1 3941979 D 375451 CDS YP_684204.1 110681197 4195339 3942953..3944029 1 NC_008209.1 basic membrane protein 3944029 4195339 RD1_4074 Roseobacter denitrificans OCh 114 basic membrane protein YP_684204.1 3942953 D 375451 CDS YP_684205.1 110681198 4195340 3944038..3944145 1 NC_008209.1 hypothetical protein 3944145 4195340 RD1_4075 Roseobacter denitrificans OCh 114 hypothetical protein YP_684205.1 3944038 D 375451 CDS YP_684206.1 110681199 4195341 3944210..3944620 1 NC_008209.1 universal stress family protein 3944620 4195341 RD1_4076 Roseobacter denitrificans OCh 114 universal stress family protein YP_684206.1 3944210 D 375451 CDS YP_684207.1 110681200 4195342 complement(3944975..3946345) 1 NC_008209.1 glutamate-cysteine ligase 3946345 gsh 4195342 gsh Roseobacter denitrificans OCh 114 glutamate-cysteine ligase YP_684207.1 3944975 R 375451 CDS YP_684208.1 110681201 4198814 complement(3946411..3946932) 1 NC_008209.1 hypothetical protein 3946932 4198814 RD1_4078 Roseobacter denitrificans OCh 114 hypothetical protein YP_684208.1 3946411 R 375451 CDS YP_684209.1 110681202 4198815 3947062..3947685 1 NC_008209.1 hypothetical protein 3947685 4198815 RD1_4079 Roseobacter denitrificans OCh 114 hypothetical protein YP_684209.1 3947062 D 375451 CDS YP_684210.1 110681203 4198816 3947707..3948669 1 NC_008209.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 3948669 ubiA 4198816 ubiA Roseobacter denitrificans OCh 114 4-hydroxybenzoate polyprenyltransferase YP_684210.1 3947707 D 375451 CDS YP_684211.1 110681204 4198817 3948730..3950607 1 NC_008209.1 OmpA domain-containing protein 3950607 4198817 RD1_4081 Roseobacter denitrificans OCh 114 OmpA domain-containing protein YP_684211.1 3948730 D 375451 CDS YP_684212.1 110681205 4198818 3950642..3950971 1 NC_008209.1 hypothetical protein 3950971 4198818 RD1_4082 Roseobacter denitrificans OCh 114 hypothetical protein YP_684212.1 3950642 D 375451 CDS YP_684213.1 110681206 4198819 complement(3950984..3951433) 1 NC_008209.1 universal stress family protein 3951433 4198819 RD1_4083 Roseobacter denitrificans OCh 114 universal stress family protein YP_684213.1 3950984 R 375451 CDS YP_684214.1 110681207 4198820 complement(3951523..3951966) 1 NC_008209.1 molybdopterin converting factor subunit 2 3951966 moaE 4198820 moaE Roseobacter denitrificans OCh 114 molybdopterin converting factor subunit 2 YP_684214.1 3951523 R 375451 CDS YP_684215.1 110681208 4198821 complement(3951970..3952215) 1 NC_008209.1 molybdopterin converting factor subunit 1 3952215 moaD 4198821 moaD Roseobacter denitrificans OCh 114 molybdopterin converting factor subunit 1 YP_684215.1 3951970 R 375451 CDS YP_684216.1 110681209 4198822 complement(3952212..3952880) 1 NC_008209.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3952880 pgsA 4198822 pgsA Roseobacter denitrificans OCh 114 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_684216.1 3952212 R 375451 CDS YP_684217.1 110681210 4198824 complement(3955150..3955929) 1 NC_008209.1 short chain dehydrogenase 3955929 4198824 RD1_4089 Roseobacter denitrificans OCh 114 short chain dehydrogenase YP_684217.1 3955150 R 375451 CDS YP_684218.1 110681211 4198825 complement(3955952..3956899) 1 NC_008209.1 sodium/calcium exchanger protein 3956899 4198825 RD1_4090 Roseobacter denitrificans OCh 114 sodium/calcium exchanger protein YP_684218.1 3955952 R 375451 CDS YP_684219.1 110681212 4198826 complement(3957074..3957871) 1 NC_008209.1 S49 family peptidase 3957871 4198826 RD1_4091 Roseobacter denitrificans OCh 114 S49 family peptidase YP_684219.1 3957074 R 375451 CDS YP_684220.1 110681213 4198827 complement(3957940..3958701) 1 NC_008209.1 ABC transporter permease 3958701 4198827 RD1_4092 Roseobacter denitrificans OCh 114 ABC transporter permease YP_684220.1 3957940 R 375451 CDS YP_684221.1 110681214 4198828 complement(3958698..3959636) 1 NC_008209.1 ABC transporter ATP-binding protein 3959636 4198828 RD1_4093 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_684221.1 3958698 R 375451 CDS YP_684222.1 110681215 4198829 3959788..3960765 1 NC_008209.1 hypothetical protein 3960765 4198829 RD1_4094 Roseobacter denitrificans OCh 114 hypothetical protein YP_684222.1 3959788 D 375451 CDS YP_684223.1 110681216 4198830 complement(3960752..3961114) 1 NC_008209.1 hypothetical protein 3961114 4198830 RD1_4095 Roseobacter denitrificans OCh 114 hypothetical protein YP_684223.1 3960752 R 375451 CDS YP_684224.1 110681217 4198831 complement(3961125..3962087) 1 NC_008209.1 oxidoreductase 3962087 4198831 RD1_4096 Roseobacter denitrificans OCh 114 oxidoreductase YP_684224.1 3961125 R 375451 CDS YP_684225.1 110681218 4198832 3962239..3962922 1 NC_008209.1 hypothetical protein 3962922 4198832 RD1_4097 Roseobacter denitrificans OCh 114 hypothetical protein YP_684225.1 3962239 D 375451 CDS YP_684226.1 110681219 4196151 complement(3962978..3966190) 1 NC_008209.1 oxidoreductase 3966190 4196151 RD1_4098 Roseobacter denitrificans OCh 114 oxidoreductase YP_684226.1 3962978 R 375451 CDS YP_684227.1 110681220 4196152 complement(3966316..3967911) 1 NC_008209.1 GMC family oxidoreductase 3967911 4196152 RD1_4099 Roseobacter denitrificans OCh 114 GMC family oxidoreductase YP_684227.1 3966316 R 375451 CDS YP_684228.1 110681221 4196153 3968020..3969252 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctP 3969252 4196153 RD1_4100 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctP YP_684228.1 3968020 D 375451 CDS YP_684229.1 110681222 4196154 3969369..3970037 1 NC_008209.1 TRAP dicarboxylate transporter DctQ subunit 3970037 4196154 RD1_4101 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter DctQ subunit YP_684229.1 3969369 D 375451 CDS YP_684230.1 110681223 4196155 3970037..3971398 1 NC_008209.1 TRAP dicarboxylate transporter subunit DctM 3971398 4196155 RD1_4102 Roseobacter denitrificans OCh 114 TRAP dicarboxylate transporter subunit DctM YP_684230.1 3970037 D 375451 CDS YP_684231.1 110681224 4196156 3971416..3972195 1 NC_008209.1 acetate operon repressor 3972195 iclR 4196156 iclR Roseobacter denitrificans OCh 114 acetate operon repressor YP_684231.1 3971416 D 375451 CDS YP_684232.1 110681225 4196157 complement(3972246..3973043) 1 NC_008209.1 transglutaminase-like superfamily protein 3973043 4196157 RD1_4104 Roseobacter denitrificans OCh 114 transglutaminase-like superfamily protein YP_684232.1 3972246 R 375451 CDS YP_684233.1 110681226 4196158 complement(3973043..3973984) 1 NC_008209.1 hypothetical protein 3973984 4196158 RD1_4105 Roseobacter denitrificans OCh 114 hypothetical protein YP_684233.1 3973043 R 375451 CDS YP_684234.1 110681227 4196159 complement(3973986..3975431) 1 NC_008209.1 hypothetical protein 3975431 4196159 RD1_4106 Roseobacter denitrificans OCh 114 hypothetical protein YP_684234.1 3973986 R 375451 CDS YP_684235.1 110681228 4196160 complement(3975543..3976013) 1 NC_008209.1 hypothetical protein 3976013 4196160 RD1_4107 Roseobacter denitrificans OCh 114 hypothetical protein YP_684235.1 3975543 R 375451 CDS YP_684236.1 110681229 4196161 complement(3976111..3976557) 1 NC_008209.1 hypothetical protein 3976557 4196161 RD1_4108 Roseobacter denitrificans OCh 114 hypothetical protein YP_684236.1 3976111 R 375451 CDS YP_684237.1 110681230 4196162 complement(3976677..3977105) 1 NC_008209.1 universal stress family protein 3977105 4196162 RD1_4109 Roseobacter denitrificans OCh 114 universal stress family protein YP_684237.1 3976677 R 375451 CDS YP_684238.1 110681231 4196163 complement(3977102..3979702) 1 NC_008209.1 TRAP transporter 4TM/12TM fusion protein 3979702 4196163 RD1_4110 Roseobacter denitrificans OCh 114 TRAP transporter 4TM/12TM fusion protein YP_684238.1 3977102 R 375451 CDS YP_684239.1 110681232 4196164 complement(3979798..3980766) 1 NC_008209.1 hypothetical protein 3980766 4196164 RD1_4111 Roseobacter denitrificans OCh 114 hypothetical protein YP_684239.1 3979798 R 375451 CDS YP_684240.1 110681233 4196165 3981204..3983594 1 NC_008209.1 sarcosine dehydrogenase 3983594 4196165 RD1_4112 Roseobacter denitrificans OCh 114 sarcosine dehydrogenase YP_684240.1 3981204 D 375451 CDS YP_684241.1 110681234 4196166 3983698..3985038 1 NC_008209.1 hypothetical protein 3985038 4196166 RD1_4113 Roseobacter denitrificans OCh 114 hypothetical protein YP_684241.1 3983698 D 375451 CDS YP_684242.1 110681235 4196167 complement(3985056..3986195) 1 NC_008209.1 BlaR1 peptidase M56 domain-containing protein 3986195 4196167 RD1_4114 Roseobacter denitrificans OCh 114 BlaR1 peptidase M56 domain-containing protein YP_684242.1 3985056 R 375451 CDS YP_684243.1 110681236 4196168 complement(3986179..3986577) 1 NC_008209.1 transcriptional regulator 3986577 4196168 RD1_4115 Roseobacter denitrificans OCh 114 transcriptional regulator YP_684243.1 3986179 R 375451 CDS YP_684244.1 110681237 4196169 complement(3986658..3987056) 1 NC_008209.1 hypothetical protein 3987056 4196169 RD1_4116 Roseobacter denitrificans OCh 114 hypothetical protein YP_684244.1 3986658 R 375451 CDS YP_684245.1 110681238 4196170 complement(3987056..3987853) 1 NC_008209.1 sugar ABC transporter permease 3987853 4196170 RD1_4117 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684245.1 3987056 R 375451 CDS YP_684246.1 110681239 4196004 complement(3987850..3988713) 1 NC_008209.1 sugar ABC transporter permease 3988713 4196004 RD1_4118 Roseobacter denitrificans OCh 114 sugar ABC transporter permease YP_684246.1 3987850 R 375451 CDS YP_684247.1 110681240 4196005 complement(3988710..3989783) 1 NC_008209.1 sugar ABC transporter ATP-binding protein 3989783 4196005 RD1_4119 Roseobacter denitrificans OCh 114 sugar ABC transporter ATP-binding protein YP_684247.1 3988710 R 375451 CDS YP_684248.1 110681241 4196006 complement(3989783..3990847) 1 NC_008209.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein 3990847 ugpC 4196006 ugpC Roseobacter denitrificans OCh 114 sn-glycerol-3-phosphate ABC transporter ATP-binding protein YP_684248.1 3989783 R 375451 CDS YP_684249.1 110681242 4196007 complement(3990945..3992678) 1 NC_008209.1 sugar ABC transporter periplasmic sugar-binding protein 3992678 4196007 RD1_4122 Roseobacter denitrificans OCh 114 sugar ABC transporter periplasmic sugar-binding protein YP_684249.1 3990945 R 375451 CDS YP_684250.1 110681243 4196008 complement(3992779..3992925) 1 NC_008209.1 hypothetical protein 3992925 4196008 RD1_4123 Roseobacter denitrificans OCh 114 hypothetical protein YP_684250.1 3992779 R 375451 CDS YP_684251.1 110681244 4196009 3993146..3993241 1 NC_008209.1 hypothetical protein 3993241 4196009 RD1_4124 Roseobacter denitrificans OCh 114 hypothetical protein YP_684251.1 3993146 D 375451 CDS YP_684252.1 110681245 4196010 3993369..3997274 1 NC_008209.1 VBCS repeat-containing protein 3997274 4196010 RD1_4125 Roseobacter denitrificans OCh 114 VBCS repeat-containing protein YP_684252.1 3993369 D 375451 CDS YP_684253.1 110681246 4196011 3997286..3997435 1 NC_008209.1 hypothetical protein 3997435 4196011 RD1_4127 Roseobacter denitrificans OCh 114 hypothetical protein YP_684253.1 3997286 D 375451 CDS YP_684254.1 110681247 4196012 complement(3997419..3998447) 1 NC_008209.1 spermidine/putrescine ABC transporter substrate-binding protein 3998447 potD 4196012 potD Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter substrate-binding protein YP_684254.1 3997419 R 375451 CDS YP_684255.1 110681248 4196013 3998476..3998592 1 NC_008209.1 hypothetical protein 3998592 4196013 RD1_4129 Roseobacter denitrificans OCh 114 hypothetical protein YP_684255.1 3998476 D 375451 CDS YP_684256.1 110681249 4196014 complement(3998494..3998679) 1 NC_008209.1 hypothetical protein 3998679 4196014 RD1_4130 Roseobacter denitrificans OCh 114 hypothetical protein YP_684256.1 3998494 R 375451 CDS YP_684257.1 110681250 4196015 3998798..3999889 1 NC_008209.1 polyamine ABC transporter ATP-binding component 3999889 4196015 RD1_4131 Roseobacter denitrificans OCh 114 polyamine ABC transporter ATP-binding component YP_684257.1 3998798 D 375451 CDS YP_684258.1 110681251 4196016 3999889..4000815 1 NC_008209.1 spermidine/putrescine ABC transporter permease 4000815 potB 4196016 potB Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter permease YP_684258.1 3999889 D 375451 CDS YP_684259.1 110681252 4196017 4000819..4001628 1 NC_008209.1 putrescine transport system, permease 4001628 potI 4196017 potI Roseobacter denitrificans OCh 114 putrescine transport system, permease YP_684259.1 4000819 D 375451 CDS YP_684260.1 110681253 4196018 4001646..4002680 1 NC_008209.1 spermidine/putrescine ABC transporter substrate-binding protein 4002680 4196018 RD1_4134 Roseobacter denitrificans OCh 114 spermidine/putrescine ABC transporter substrate-binding protein YP_684260.1 4001646 D 375451 CDS YP_684261.1 110681254 4196019 4002747..4003784 1 NC_008209.1 acetylpolyamine aminohydrolase 4003784 aphA 4196019 aphA Roseobacter denitrificans OCh 114 acetylpolyamine aminohydrolase YP_684261.1 4002747 D 375451 CDS YP_684262.1 110681255 4196020 complement(4003830..4005125) 1 NC_008209.1 monooxygenase 4005125 4196020 RD1_4136 Roseobacter denitrificans OCh 114 monooxygenase YP_684262.1 4003830 R 375451 CDS YP_684263.1 110681256 4196021 4005284..4005400 1 NC_008209.1 hypothetical protein 4005400 4196021 RD1_4137 Roseobacter denitrificans OCh 114 hypothetical protein YP_684263.1 4005284 D 375451 CDS YP_684264.1 110681257 4196022 4005403..4005819 1 NC_008209.1 endoribonuclease L-PSP family protein 4005819 4196022 RD1_4138 Roseobacter denitrificans OCh 114 endoribonuclease L-PSP family protein YP_684264.1 4005403 D 375451 CDS YP_684265.1 110681258 4195867 4005816..4006490 1 NC_008209.1 hypothetical protein 4006490 4195867 RD1_4139 Roseobacter denitrificans OCh 114 hypothetical protein YP_684265.1 4005816 D 375451 CDS YP_684266.1 110681259 4195868 4006689..4007624 1 NC_008209.1 LysR family transcriptional regulator 4007624 4195868 RD1_4140 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684266.1 4006689 D 375451 CDS YP_684267.1 110681260 4195869 4007731..4009137 1 NC_008209.1 trimethylamine dehydrogenase 4009137 tmd 4195869 tmd Roseobacter denitrificans OCh 114 trimethylamine dehydrogenase YP_684267.1 4007731 D 375451 CDS YP_684268.1 110681261 4195870 4009218..4009799 1 NC_008209.1 trimethylamine dehydrogenase 4009799 tmd 4195870 tmd Roseobacter denitrificans OCh 114 trimethylamine dehydrogenase YP_684268.1 4009218 D 375451 CDS YP_684269.1 110681262 4195871 4009812..4010960 1 NC_008209.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 4010960 argE 4195871 argE Roseobacter denitrificans OCh 114 acetylornithine deacetylase YP_684269.1 4009812 D 375451 CDS YP_684270.1 110681263 4195872 complement(4011028..4013430) 1 NC_008209.1 hypothetical protein 4013430 4195872 RD1_4144 Roseobacter denitrificans OCh 114 hypothetical protein YP_684270.1 4011028 R 375451 CDS YP_684271.1 110681264 4195873 complement(4013452..4015011) 1 NC_008209.1 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase 4015011 nuo 4195873 nuo Roseobacter denitrificans OCh 114 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase YP_684271.1 4013452 R 375451 CDS YP_684272.1 110681265 4195874 4015120..4015998 1 NC_008209.1 LysR family transcriptional regulator 4015998 4195874 RD1_4146 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684272.1 4015120 D 375451 CDS YP_684273.1 110681266 4195875 complement(4016067..4017125) 1 NC_008209.1 N-acetyl-anhydromuramyl-L-alanine amidase 4017125 ampD 4195875 ampD Roseobacter denitrificans OCh 114 N-acetyl-anhydromuramyl-L-alanine amidase YP_684273.1 4016067 R 375451 CDS YP_684274.1 110681267 4195876 complement(4017247..4018479) 1 NC_008209.1 hypothetical protein 4018479 4195876 RD1_4148 Roseobacter denitrificans OCh 114 hypothetical protein YP_684274.1 4017247 R 375451 CDS YP_684275.1 110681268 4195877 4018580..4019509 1 NC_008209.1 LysR family transcriptional regulator 4019509 4195877 RD1_4149 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684275.1 4018580 D 375451 CDS YP_684276.1 110681269 4195878 complement(4019564..4019917) 1 NC_008209.1 hypothetical protein 4019917 4195878 RD1_4150 Roseobacter denitrificans OCh 114 hypothetical protein YP_684276.1 4019564 R 375451 CDS YP_684277.1 110681270 4195879 4020059..4021477 1 NC_008209.1 hypothetical protein 4021477 4195879 RD1_4151 Roseobacter denitrificans OCh 114 hypothetical protein YP_684277.1 4020059 D 375451 CDS YP_684278.1 110681271 4195880 4021474..4021965 1 NC_008209.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4021965 allA 4195880 allA Roseobacter denitrificans OCh 114 ureidoglycolate hydrolase YP_684278.1 4021474 D 375451 CDS YP_684279.1 110681272 4195881 4022011..4023429 1 NC_008209.1 xanthine/uracil permease 4023429 4195881 RD1_4153 Roseobacter denitrificans OCh 114 xanthine/uracil permease YP_684279.1 4022011 D 375451 CDS YP_684280.1 110681273 4195882 complement(4023866..4024699) 1 NC_008209.1 hypothetical protein 4024699 4195882 RD1_4154 Roseobacter denitrificans OCh 114 hypothetical protein YP_684280.1 4023866 R 375451 CDS YP_684281.1 110681274 4195883 complement(4024944..4025171) 1 NC_008209.1 hypothetical protein 4025171 4195883 RD1_4155 Roseobacter denitrificans OCh 114 hypothetical protein YP_684281.1 4024944 R 375451 CDS YP_684282.1 110681275 4195884 complement(4025178..4025603) 1 NC_008209.1 hypothetical protein 4025603 4195884 RD1_4156 Roseobacter denitrificans OCh 114 hypothetical protein YP_684282.1 4025178 R 375451 CDS YP_684283.1 110681276 4195885 4025708..4026301 1 NC_008209.1 TetR family transcriptional regulator 4026301 4195885 RD1_4157 Roseobacter denitrificans OCh 114 TetR family transcriptional regulator YP_684283.1 4025708 D 375451 CDS YP_684284.1 110681277 4195886 complement(4026554..4027498) 1 NC_008209.1 hypothetical protein 4027498 4195886 RD1_4158 Roseobacter denitrificans OCh 114 hypothetical protein YP_684284.1 4026554 R 375451 CDS YP_684285.1 110681278 4195694 complement(4027512..4028321) 1 NC_008209.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4028321 fabG 4195694 fabG Roseobacter denitrificans OCh 114 3-ketoacyl-ACP reductase YP_684285.1 4027512 R 375451 CDS YP_684286.1 110681279 4195695 complement(4028895..4029890) 1 NC_008209.1 Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 4029890 4195695 RD1_4160 Roseobacter denitrificans OCh 114 3-hydroxyacyl-CoA dehydrogenase YP_684286.1 4028895 R 375451 CDS YP_684287.1 110681280 4195696 complement(4030442..4031038) 1 NC_008209.1 hypothetical protein 4031038 4195696 RD1_4161 Roseobacter denitrificans OCh 114 hypothetical protein YP_684287.1 4030442 R 375451 CDS YP_684288.1 110681281 4195697 complement(4031598..4032080) 1 NC_008209.1 acetyltransferase 4032080 4195697 RD1_4162 Roseobacter denitrificans OCh 114 acetyltransferase YP_684288.1 4031598 R 375451 CDS YP_684289.1 110681282 4195698 complement(4032729..4034126) 1 NC_008209.1 siroheme synthase 4034126 cysG 4195698 cysG Roseobacter denitrificans OCh 114 siroheme synthase YP_684289.1 4032729 R 375451 CDS YP_684290.1 110681283 4195699 complement(4034123..4034416) 1 NC_008209.1 hypothetical protein 4034416 4195699 RD1_4165 Roseobacter denitrificans OCh 114 hypothetical protein YP_684290.1 4034123 R 375451 CDS YP_684291.1 110681284 4195700 complement(4034413..4036989) 1 NC_008209.1 nitrate reductase 4036989 nasA 4195700 nasA Roseobacter denitrificans OCh 114 nitrate reductase YP_684291.1 4034413 R 375451 CDS YP_684292.1 110681285 4195701 complement(4036986..4037321) 1 NC_008209.1 assimilatory nitrite reductase, small subunit 4037321 nirD 4195701 nirD Roseobacter denitrificans OCh 114 assimilatory nitrite reductase, small subunit YP_684292.1 4036986 R 375451 CDS YP_684293.1 110681286 4195702 complement(4037318..4039744) 1 NC_008209.1 assimilatory nitrite reductase, large subunit 4039744 nirB 4195702 nirB Roseobacter denitrificans OCh 114 assimilatory nitrite reductase, large subunit YP_684293.1 4037318 R 375451 CDS YP_684294.1 110681287 4195703 complement(4039750..4041408) 1 NC_008209.1 nitrate ABC transporter protein, ATP binding component 4041408 nasD 4195703 nasD Roseobacter denitrificans OCh 114 nitrate ABC transporter protein, ATP binding component YP_684294.1 4039750 R 375451 CDS YP_684295.1 110681288 4195704 complement(4041414..4042487) 1 NC_008209.1 nitrate ABC transporter permease 4042487 nasE 4195704 nasE Roseobacter denitrificans OCh 114 nitrate ABC transporter permease YP_684295.1 4041414 R 375451 CDS YP_684296.1 110681289 4195705 complement(4042564..4043934) 1 NC_008209.1 nitrate transporter substrate-binding 4043934 nasF 4195705 nasF Roseobacter denitrificans OCh 114 nitrate transporter substrate-binding YP_684296.1 4042564 R 375451 CDS YP_684297.1 110681290 4195706 complement(4044192..4045325) 1 NC_008209.1 nitrate transport ATP-binding protein 4045325 nasS 4195706 nasS Roseobacter denitrificans OCh 114 nitrate transport ATP-binding protein YP_684297.1 4044192 R 375451 CDS YP_684298.1 110681291 4195707 complement(4045322..4045906) 1 NC_008209.1 response regulator NasT 4045906 nasT 4195707 nasT Roseobacter denitrificans OCh 114 response regulator NasT YP_684298.1 4045322 R 375451 CDS YP_684299.1 110681292 4195708 complement(4046303..4046794) 1 NC_008209.1 hypothetical protein 4046794 4195708 RD1_4175 Roseobacter denitrificans OCh 114 hypothetical protein YP_684299.1 4046303 R 375451 CDS YP_684300.1 110681293 4195709 complement(4046852..4047367) 1 NC_008209.1 hypothetical protein 4047367 4195709 RD1_4176 Roseobacter denitrificans OCh 114 hypothetical protein YP_684300.1 4046852 R 375451 CDS YP_684301.1 110681294 4195710 complement(4047436..4048050) 1 NC_008209.1 hypothetical protein 4048050 4195710 RD1_4177 Roseobacter denitrificans OCh 114 hypothetical protein YP_684301.1 4047436 R 375451 CDS YP_684302.1 110681295 4195711 complement(4048119..4048571) 1 NC_008209.1 hypothetical protein 4048571 4195711 RD1_4178 Roseobacter denitrificans OCh 114 hypothetical protein YP_684302.1 4048119 R 375451 CDS YP_684303.1 110681296 4195712 complement(4048568..4049251) 1 NC_008209.1 hypothetical protein 4049251 4195712 RD1_4179 Roseobacter denitrificans OCh 114 hypothetical protein YP_684303.1 4048568 R 375451 CDS YP_684304.1 110681297 4195674 complement(4049271..4049936) 1 NC_008209.1 methyltransferase 4049936 4195674 RD1_4180 Roseobacter denitrificans OCh 114 methyltransferase YP_684304.1 4049271 R 375451 CDS YP_684305.1 110681298 4195675 4050040..4050954 1 NC_008209.1 LysR family transcriptional regulator 4050954 4195675 RD1_4181 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_684305.1 4050040 D 375451 CDS YP_684306.1 110681299 4195676 complement(4051021..4051131) 1 NC_008209.1 hypothetical protein 4051131 4195676 RD1_4182 Roseobacter denitrificans OCh 114 hypothetical protein YP_684306.1 4051021 R 375451 CDS YP_684307.1 110681300 4195677 4051105..4051521 1 NC_008209.1 hypothetical protein 4051521 4195677 RD1_4183 Roseobacter denitrificans OCh 114 hypothetical protein YP_684307.1 4051105 D 375451 CDS YP_684308.1 110681301 4195678 4051518..4051982 1 NC_008209.1 hypothetical protein 4051982 4195678 RD1_4184 Roseobacter denitrificans OCh 114 hypothetical protein YP_684308.1 4051518 D 375451 CDS YP_684309.1 110681302 4195679 4051942..4052400 1 NC_008209.1 hypothetical protein 4052400 4195679 RD1_4185 Roseobacter denitrificans OCh 114 hypothetical protein YP_684309.1 4051942 D 375451 CDS YP_684310.1 110681303 4195680 4052718..4054634 1 NC_008209.1 sodium/solute symporter 4054634 4195680 RD1_4186 Roseobacter denitrificans OCh 114 sodium/solute symporter YP_684310.1 4052718 D 375451 CDS YP_684311.1 110681304 4195681 4054621..4054788 1 NC_008209.1 hypothetical protein 4054788 4195681 RD1_4187 Roseobacter denitrificans OCh 114 hypothetical protein YP_684311.1 4054621 D 375451 CDS YP_684312.1 110681305 4195682 4055047..4056102 1 NC_008209.1 hemin transport protein 4056102 hmuS 4195682 hmuS Roseobacter denitrificans OCh 114 hemin transport protein YP_684312.1 4055047 D 375451 CDS YP_684313.1 110681306 4195683 4056099..4056959 1 NC_008209.1 hemin ABC transporter periplasmic hemin-binding protein 4056959 hmuT 4195683 hmuT Roseobacter denitrificans OCh 114 hemin ABC transporter periplasmic hemin-binding protein YP_684313.1 4056099 D 375451 CDS YP_684314.1 110681307 4195684 4056880..4058031 1 NC_008209.1 hemin ABC transporter permease 4058031 4195684 RD1_4190 Roseobacter denitrificans OCh 114 hemin ABC transporter permease YP_684314.1 4056880 D 375451 CDS YP_684315.1 110681308 4195685 4058033..4058818 1 NC_008209.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4058818 hmuV 4195685 hmuV Roseobacter denitrificans OCh 114 hemin importer ATP-binding subunit YP_684315.1 4058033 D 375451 CDS YP_684316.1 110681309 4195686 4059065..4059376 1 NC_008209.1 hypothetical protein 4059376 4195686 RD1_4192 Roseobacter denitrificans OCh 114 hypothetical protein YP_684316.1 4059065 D 375451 CDS YP_684317.1 110681310 4195687 4059564..4061681 1 NC_008209.1 heme transport protein 4061681 hugA 4195687 hugA Roseobacter denitrificans OCh 114 heme transport protein YP_684317.1 4059564 D 375451 CDS YP_684318.1 110681311 4195688 4061785..4063710 1 NC_008209.1 aminopeptidase 4063710 pepN 4195688 pepN Roseobacter denitrificans OCh 114 aminopeptidase YP_684318.1 4061785 D 375451 CDS YP_684319.1 110681312 4195689 4063946..4064347 1 NC_008209.1 hypothetical protein 4064347 4195689 RD1_4195 Roseobacter denitrificans OCh 114 hypothetical protein YP_684319.1 4063946 D 375451 CDS YP_684320.1 110681313 4195690 4064344..4065018 1 NC_008209.1 MotA/TolQ/ExbB proton channel family protein 4065018 4195690 RD1_4196 Roseobacter denitrificans OCh 114 MotA/TolQ/ExbB proton channel family protein YP_684320.1 4064344 D 375451 CDS YP_684321.1 110681314 4195691 4065011..4065367 1 NC_008209.1 hypothetical protein 4065367 4195691 RD1_4197 Roseobacter denitrificans OCh 114 hypothetical protein YP_684321.1 4065011 D 375451 CDS YP_684322.1 110681315 4195692 4065364..4065738 1 NC_008209.1 hypothetical protein 4065738 4195692 RD1_4198 Roseobacter denitrificans OCh 114 hypothetical protein YP_684322.1 4065364 D 375451 CDS YP_684323.1 110681316 4195693 4065735..4066670 1 NC_008209.1 hypothetical protein 4066670 4195693 RD1_4199 Roseobacter denitrificans OCh 114 hypothetical protein YP_684323.1 4065735 D 375451 CDS YP_684324.1 110681317 4195655 complement(4066711..4067547) 1 NC_008209.1 sensory transduction protein LytT 4067547 lytT 4195655 lytT Roseobacter denitrificans OCh 114 sensory transduction protein LytT YP_684324.1 4066711 R 375451 CDS YP_684325.1 110681318 4195656 4067598..4068491 1 NC_008209.1 ABC transporter ATP-binding protein 4068491 4195656 RD1_4201 Roseobacter denitrificans OCh 114 ABC transporter ATP-binding protein YP_684325.1 4067598 D 375451 CDS YP_684326.1 110681319 4195657 4068488..4069207 1 NC_008209.1 ABC transporter permease 4069207 4195657 RD1_4202 Roseobacter denitrificans OCh 114 ABC transporter permease YP_684326.1 4068488 D 375451 CDS YP_684327.1 110681320 4195658 complement(4069247..4070260) 1 NC_008209.1 UDP-glucose 4-epimerase 4070260 galE 4195658 galE Roseobacter denitrificans OCh 114 UDP-glucose 4-epimerase YP_684327.1 4069247 R 375451 CDS YP_684328.1 110681321 4195659 4070381..4072048 1 NC_008209.1 hypothetical protein 4072048 4195659 RD1_4204 Roseobacter denitrificans OCh 114 hypothetical protein YP_684328.1 4070381 D 375451 CDS YP_684329.1 110681322 4195660 4072100..4073122 1 NC_008209.1 NeuB family protein 4073122 4195660 RD1_4205 Roseobacter denitrificans OCh 114 NeuB family protein YP_684329.1 4072100 D 375451 CDS YP_684330.1 110681323 4195661 4073119..4074135 1 NC_008209.1 hypothetical protein 4074135 4195661 RD1_4206 Roseobacter denitrificans OCh 114 hypothetical protein YP_684330.1 4073119 D 375451 CDS YP_684331.1 110681324 4195662 4074268..4075878 1 NC_008209.1 cytidine 5monophosphate N-acetylneuraminic acid synthetase 4075878 4195662 RD1_4207 Roseobacter denitrificans OCh 114 cytidine 5monophosphate N-acetylneuraminic acid synthetase YP_684331.1 4074268 D 375451 CDS YP_684332.1 110681325 4195663 complement(4076021..4076143) 1 NC_008209.1 hypothetical protein 4076143 4195663 RD1_4208 Roseobacter denitrificans OCh 114 hypothetical protein YP_684332.1 4076021 R 375451 CDS YP_684333.1 110681326 4195664 4076920..4078983 1 NC_008209.1 EAL/GGDEF/PAS domain-containing protein 4078983 4195664 RD1_4210 Roseobacter denitrificans OCh 114 EAL/GGDEF/PAS domain-containing protein YP_684333.1 4076920 D 375451 CDS YP_684334.1 110681327 4195665 complement(4079150..4079830) 1 NC_008209.1 hypothetical protein 4079830 4195665 RD1_4211 Roseobacter denitrificans OCh 114 hypothetical protein YP_684334.1 4079150 R 375451 CDS YP_684335.1 110681328 4195666 complement(4079874..4079993) 1 NC_008209.1 hypothetical protein 4079993 4195666 RD1_4212 Roseobacter denitrificans OCh 114 hypothetical protein YP_684335.1 4079874 R 375451 CDS YP_684336.1 110681329 4195667 4080197..4081492 1 NC_008209.1 hypothetical protein 4081492 4195667 RD1_4213 Roseobacter denitrificans OCh 114 hypothetical protein YP_684336.1 4080197 D 375451 CDS YP_684337.1 110681330 4195668 4081489..4082298 1 NC_008209.1 hypothetical protein 4082298 4195668 RD1_4214 Roseobacter denitrificans OCh 114 hypothetical protein YP_684337.1 4081489 D 375451 CDS YP_684338.1 110681331 4195669 4082802..4083293 1 NC_008209.1 hypothetical protein 4083293 4195669 RD1_4215 Roseobacter denitrificans OCh 114 hypothetical protein YP_684338.1 4082802 D 375451 CDS YP_684339.1 110681332 4195670 4083293..4084030 1 NC_008209.1 hypothetical protein 4084030 4195670 RD1_4216 Roseobacter denitrificans OCh 114 hypothetical protein YP_684339.1 4083293 D 375451 CDS YP_684340.1 110681333 4195671 4084046..4086433 1 NC_008209.1 hypothetical protein 4086433 4195671 RD1_4217 Roseobacter denitrificans OCh 114 hypothetical protein YP_684340.1 4084046 D 375451 CDS YP_684341.1 110681334 4195672 4086459..4086917 1 NC_008209.1 hypothetical protein 4086917 4195672 RD1_4218 Roseobacter denitrificans OCh 114 hypothetical protein YP_684341.1 4086459 D 375451 CDS YP_684342.1 110681335 4195673 4086923..4087378 1 NC_008209.1 hypothetical protein 4087378 4195673 RD1_4219 Roseobacter denitrificans OCh 114 hypothetical protein YP_684342.1 4086923 D 375451 CDS YP_684343.1 110681336 4195539 4087378..4087551 1 NC_008209.1 hypothetical protein 4087551 4195539 RD1_4220 Roseobacter denitrificans OCh 114 hypothetical protein YP_684343.1 4087378 D 375451 CDS YP_684344.1 110681337 4195540 4087555..4088241 1 NC_008209.1 hypothetical protein 4088241 4195540 RD1_4221 Roseobacter denitrificans OCh 114 hypothetical protein YP_684344.1 4087555 D 375451 CDS YP_684345.1 110681338 4195541 4088249..4090015 1 NC_008209.1 hypothetical protein 4090015 4195541 RD1_4222 Roseobacter denitrificans OCh 114 hypothetical protein YP_684345.1 4088249 D 375451 CDS YP_684346.1 110681339 4195542 4090042..4090332 1 NC_008209.1 hypothetical protein 4090332 4195542 RD1_4223 Roseobacter denitrificans OCh 114 hypothetical protein YP_684346.1 4090042 D 375451 CDS YP_684347.1 110681340 4195543 4090334..4090771 1 NC_008209.1 hypothetical protein 4090771 4195543 RD1_4224 Roseobacter denitrificans OCh 114 hypothetical protein YP_684347.1 4090334 D 375451 CDS YP_684348.1 110681341 4195544 4090775..4091722 1 NC_008209.1 hypothetical protein 4091722 4195544 RD1_4225 Roseobacter denitrificans OCh 114 hypothetical protein YP_684348.1 4090775 D 375451 CDS YP_684349.1 110681342 4195545 4091715..4095827 1 NC_008209.1 hypothetical protein 4095827 4195545 RD1_4226 Roseobacter denitrificans OCh 114 hypothetical protein YP_684349.1 4091715 D 375451 CDS YP_684350.1 110681343 4195546 4095824..4096684 1 NC_008209.1 hypothetical protein 4096684 4195546 RD1_4227 Roseobacter denitrificans OCh 114 hypothetical protein YP_684350.1 4095824 D 375451 CDS YP_684351.1 110681344 4195547 4096681..4098939 1 NC_008209.1 hypothetical protein 4098939 4195547 RD1_4228 Roseobacter denitrificans OCh 114 hypothetical protein YP_684351.1 4096681 D 375451 CDS YP_684352.1 110681345 4195548 4098939..4102016 1 NC_008209.1 hypothetical protein 4102016 4195548 RD1_4230 Roseobacter denitrificans OCh 114 hypothetical protein YP_684352.1 4098939 D 375451 CDS YP_684353.1 110681346 4195549 4102009..4103352 1 NC_008209.1 ATPase 4103352 4195549 RD1_4231 Roseobacter denitrificans OCh 114 ATPase YP_684353.1 4102009 D 375451 CDS YP_684354.1 110681347 4195550 4103349..4106678 1 NC_008209.1 hypothetical protein 4106678 4195550 RD1_4232 Roseobacter denitrificans OCh 114 hypothetical protein YP_684354.1 4103349 D 375451 CDS YP_684355.1 110681348 4195551 4107162..4108844 1 NC_008209.1 formate dehydrogenase subunit beta 4108844 fdhB 4195551 fdhB Roseobacter denitrificans OCh 114 formate dehydrogenase subunit beta YP_684355.1 4107162 D 375451 CDS YP_684356.1 110681349 4195552 4108848..4111625 1 NC_008209.1 formate dehydrogenase subunit alpha 4111625 fdhA 4195552 fdhA Roseobacter denitrificans OCh 114 formate dehydrogenase subunit alpha YP_684356.1 4108848 D 375451 CDS YP_684357.1 110681350 4195553 4111653..4113329 1 NC_008209.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 4113329 fhs 4195553 fhs Roseobacter denitrificans OCh 114 formate--tetrahydrofolate ligase YP_684357.1 4111653 D 375451 CDS YP_684358.1 110681351 4195554 4113443..4114345 1 NC_008209.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 4114345 folD 4195554 folD Roseobacter denitrificans OCh 114 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_684358.1 4113443 D 375451 CDS YP_684359.1 110681352 4195555 4114345..4115217 1 NC_008209.1 FolD bifunctional protein 4115217 folD 4195555 folD Roseobacter denitrificans OCh 114 FolD bifunctional protein YP_684359.1 4114345 D 375451 CDS YP_684360.1 110681353 4195556 complement(4115318..4116163) 1 NC_008209.1 hypothetical protein 4116163 4195556 RD1_4238 Roseobacter denitrificans OCh 114 hypothetical protein YP_684360.1 4115318 R 375451 CDS YP_684361.1 110681354 4195557 4116341..4116799 1 NC_008209.1 globin-like protein 4116799 4195557 RD1_4240 Roseobacter denitrificans OCh 114 globin-like protein YP_684361.1 4116341 D 375451 CDS YP_684362.1 110681355 4195558 complement(4116806..4118083) 1 NC_008209.1 hydroxypyruvate reductase 4118083 4195558 RD1_4241 Roseobacter denitrificans OCh 114 hydroxypyruvate reductase YP_684362.1 4116806 R 375451 CDS YP_684363.1 110681356 4196139 complement(4118070..4119047) 1 NC_008209.1 malyl-CoA lyase 4119047 mclA 4196139 mclA Roseobacter denitrificans OCh 114 malyl-CoA lyase YP_684363.1 4118070 R 375451 CDS YP_684364.1 110681357 4196140 complement(4119156..4119788) 1 NC_008209.1 nitrate/nitrite response regulator protein 4119788 narP 4196140 narP Roseobacter denitrificans OCh 114 nitrate/nitrite response regulator protein YP_684364.1 4119156 R 375451 CDS YP_684365.1 110681358 4196141 4119999..4121240 1 NC_008209.1 aminotransferase 4121240 4196141 RD1_4244 Roseobacter denitrificans OCh 114 aminotransferase YP_684365.1 4119999 D 375451 CDS YP_684366.1 110681359 4196142 4121281..4122480 1 NC_008209.1 catalyzes the formation of malyl-CoA from malate and CoA; malate--CoA ligase subunit beta 4122480 sucC 4196142 sucC Roseobacter denitrificans OCh 114 malate--CoA ligase subunit beta YP_684366.1 4121281 D 375451 CDS YP_684367.1 110681360 4196143 4122477..4123370 1 NC_008209.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4123370 mtkB 4196143 mtkB Roseobacter denitrificans OCh 114 succinyl-CoA synthetase subunit alpha YP_684367.1 4122477 D 375451 CDS YP_684368.1 110681361 4196144 4123370..4124362 1 NC_008209.1 glyoxylate reductase 4124362 gyaR 4196144 gyaR Roseobacter denitrificans OCh 114 glyoxylate reductase YP_684368.1 4123370 D 375451 CDS YP_684369.1 110681362 4196145 4124362..4126977 1 NC_008209.1 phosphoenolpyruvate carboxylase 4126977 ppc 4196145 ppc Roseobacter denitrificans OCh 114 phosphoenolpyruvate carboxylase YP_684369.1 4124362 D 375451 CDS YP_684370.1 110681363 4196146 4127012..4128307 1 NC_008209.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4128307 glyA 4196146 glyA Roseobacter denitrificans OCh 114 serine hydroxymethyltransferase YP_684370.1 4127012 D 375451 CDS YP_684371.1 110681364 4196147 complement(4128395..4129750) 1 NC_008209.1 glutamine synthetase 4129750 glnT 4196147 glnT Roseobacter denitrificans OCh 114 glutamine synthetase YP_684371.1 4128395 R 375451 CDS YP_684372.1 110681365 4196148 complement(4129856..4131196) 1 NC_008209.1 glutamate synthase family protein 4131196 4196148 RD1_4251 Roseobacter denitrificans OCh 114 glutamate synthase family protein YP_684372.1 4129856 R 375451 CDS YP_684373.1 110681366 4196149 complement(4131207..4131890) 1 NC_008209.1 FwdC/FmdC family protein 4131890 4196149 RD1_4252 Roseobacter denitrificans OCh 114 FwdC/FmdC family protein YP_684373.1 4131207 R 375451 CDS YP_684374.1 110681367 4196150 complement(4131890..4132819) 1 NC_008209.1 glutamine amidotransferase 4132819 4196150 RD1_4253 Roseobacter denitrificans OCh 114 glutamine amidotransferase YP_684374.1 4131890 R 375451 CDS YP_771713.1 115345531 4312008 799..2088 1 NC_008386.1 hypothetical protein 2088 4312008 RD1_A0001 Roseobacter denitrificans OCh 114 hypothetical protein YP_771713.1 799 D 375451 CDS YP_771714.1 115345532 4312009 complement(2096..3301) 1 NC_008386.1 sodium/glutamate symporter 3301 gltS 4312009 gltS Roseobacter denitrificans OCh 114 sodium/glutamate symporter YP_771714.1 2096 R 375451 CDS YP_771715.1 115345533 4312010 complement(3317..3451) 1 NC_008386.1 hypothetical protein 3451 4312010 RD1_A0003 Roseobacter denitrificans OCh 114 hypothetical protein YP_771715.1 3317 R 375451 CDS YP_771716.1 115345534 4312011 complement(3438..4949) 1 NC_008386.1 glycine betaine transporter 4949 opuD 4312011 opuD Roseobacter denitrificans OCh 114 glycine betaine transporter YP_771716.1 3438 R 375451 CDS YP_771717.1 115345535 4312012 complement(5140..6174) 1 NC_008386.1 integrase catalytic subunit 6174 4312012 RD1_A0005 Roseobacter denitrificans OCh 114 integrase catalytic subunit YP_771717.1 5140 R 375451 CDS YP_771718.1 115345536 4312013 complement(6349..7359) 1 NC_008386.1 hypothetical protein 7359 4312013 RD1_A0006 Roseobacter denitrificans OCh 114 hypothetical protein YP_771718.1 6349 R 375451 CDS YP_771719.1 115345537 4312014 complement(7740..8723) 1 NC_008386.1 type IV secretory pathway, VirB11 component, putative 8723 virB11 4312014 virB11 Roseobacter denitrificans OCh 114 type IV secretory pathway, VirB11 component, putative YP_771719.1 7740 R 375451 CDS YP_771720.1 115345538 4312015 complement(8720..10051) 1 NC_008386.1 putative VirB10 protein 10051 4312015 RD1_A0008 Roseobacter denitrificans OCh 114 putative VirB10 protein YP_771720.1 8720 R 375451 CDS YP_771721.1 115345539 4311950 complement(10051..10806) 1 NC_008386.1 putative VirB9 protein 10806 4311950 RD1_A0009 Roseobacter denitrificans OCh 114 putative VirB9 protein YP_771721.1 10051 R 375451 CDS YP_771722.1 115345540 4311951 complement(10806..11480) 1 NC_008386.1 VirB8 protein 11480 4311951 RD1_A0010 Roseobacter denitrificans OCh 114 VirB8 protein YP_771722.1 10806 R 375451 CDS YP_771723.1 115345541 4311952 complement(11544..12716) 1 NC_008386.1 putative conjugal transfer protein 12716 4311952 RD1_A0011 Roseobacter denitrificans OCh 114 putative conjugal transfer protein YP_771723.1 11544 R 375451 CDS YP_771724.1 115345542 4311953 complement(12720..13175) 1 NC_008386.1 hypothetical protein 13175 4311953 RD1_A0012 Roseobacter denitrificans OCh 114 hypothetical protein YP_771724.1 12720 R 375451 CDS YP_771725.1 115345543 4311954 complement(13178..13888) 1 NC_008386.1 RC163, putative 13888 4311954 RD1_A0013 Roseobacter denitrificans OCh 114 RC163, putative YP_771725.1 13178 R 375451 CDS YP_771726.1 115345544 4311955 complement(14019..16379) 1 NC_008386.1 VirB4 protein, putative 16379 virB4 4311955 virB4 Roseobacter denitrificans OCh 114 VirB4 protein, putative YP_771726.1 14019 R 375451 CDS YP_771727.1 115345545 4311956 complement(16372..16647) 1 NC_008386.1 type IV secretion system protein, putative 16647 4311956 RD1_A0015 Roseobacter denitrificans OCh 114 type IV secretion system protein, putative YP_771727.1 16372 R 375451 CDS YP_771728.1 115345546 4311957 complement(16650..16931) 1 NC_008386.1 hypothetical protein 16931 4311957 RD1_A0016 Roseobacter denitrificans OCh 114 hypothetical protein YP_771728.1 16650 R 375451 CDS YP_771729.1 115345547 4311958 complement(16919..17629) 1 NC_008386.1 transglycosylase, putative 17629 4311958 RD1_A0017 Roseobacter denitrificans OCh 114 transglycosylase, putative YP_771729.1 16919 R 375451 CDS YP_771730.1 115345548 4311959 complement(17608..18087) 1 NC_008386.1 hypothetical protein 18087 4311959 RD1_A0018 Roseobacter denitrificans OCh 114 hypothetical protein YP_771730.1 17608 R 375451 CDS YP_771731.1 115345549 4311960 complement(19212..19340) 1 NC_008386.1 hypothetical protein 19340 4311960 RD1_A0019 Roseobacter denitrificans OCh 114 hypothetical protein YP_771731.1 19212 R 375451 CDS YP_771732.1 115345550 4311961 19963..21318 1 NC_008386.1 RC102 21318 4311961 RD1_A0021 Roseobacter denitrificans OCh 114 RC102 YP_771732.1 19963 D 375451 CDS YP_771733.1 115345551 4311962 21315..22337 1 NC_008386.1 RC101 22337 4311962 RD1_A0023 Roseobacter denitrificans OCh 114 RC101 YP_771733.1 21315 D 375451 CDS YP_771734.1 115345552 4311963 22578..23891 1 NC_008386.1 replication protein C 23891 4311963 RD1_A0024 Roseobacter denitrificans OCh 114 replication protein C YP_771734.1 22578 D 375451 CDS YP_771735.1 115345553 4311964 23967..24197 1 NC_008386.1 virulence associated protein, putative 24197 vagC 4311964 vagC Roseobacter denitrificans OCh 114 virulence associated protein, putative YP_771735.1 23967 D 375451 CDS YP_771736.1 115345554 4311965 24194..24616 1 NC_008386.1 hypothetical protein 24616 4311965 RD1_A0026 Roseobacter denitrificans OCh 114 hypothetical protein YP_771736.1 24194 D 375451 CDS YP_771737.1 115345555 4311966 complement(24822..25127) 1 NC_008386.1 hypothetical protein 25127 4311966 RD1_A0027 Roseobacter denitrificans OCh 114 hypothetical protein YP_771737.1 24822 R 375451 CDS YP_771738.1 115345556 4311967 24837..25184 1 NC_008386.1 hypothetical protein 25184 4311967 RD1_A0028 Roseobacter denitrificans OCh 114 hypothetical protein YP_771738.1 24837 D 375451 CDS YP_771739.1 115345557 4311968 complement(25181..26395) 1 NC_008386.1 integrase, putative 26395 4311968 RD1_A0030 Roseobacter denitrificans OCh 114 integrase, putative YP_771739.1 25181 R 375451 CDS YP_771740.1 115345558 4311969 26520..27482 1 NC_008386.1 hypothetical protein 27482 4311969 RD1_A0031 Roseobacter denitrificans OCh 114 hypothetical protein YP_771740.1 26520 D 375451 CDS YP_771741.1 115345559 4311931 27479..28108 1 NC_008386.1 transcriptional regulator (Ypuh-like), putative 28108 4311931 RD1_A0032 Roseobacter denitrificans OCh 114 transcriptional regulator (Ypuh-like), putative YP_771741.1 27479 D 375451 CDS YP_771742.1 115345560 4311932 28518..28910 1 NC_008386.1 hypothetical protein 28910 4311932 RD1_A0033 Roseobacter denitrificans OCh 114 hypothetical protein YP_771742.1 28518 D 375451 CDS YP_771743.1 115345561 4311933 28917..29300 1 NC_008386.1 hypothetical protein 29300 4311933 RD1_A0034 Roseobacter denitrificans OCh 114 hypothetical protein YP_771743.1 28917 D 375451 CDS YP_771744.1 115345562 4311934 29455..32001 1 NC_008386.1 hypothetical protein 32001 4311934 RD1_A0035 Roseobacter denitrificans OCh 114 hypothetical protein YP_771744.1 29455 D 375451 CDS YP_771745.1 115345563 4311935 31979..33286 1 NC_008386.1 hypothetical protein 33286 4311935 RD1_A0036 Roseobacter denitrificans OCh 114 hypothetical protein YP_771745.1 31979 D 375451 CDS YP_771746.1 115345564 4311936 33289..35469 1 NC_008386.1 ATP-dependent helicase, putative 35469 4311936 RD1_A0037 Roseobacter denitrificans OCh 114 ATP-dependent helicase, putative YP_771746.1 33289 D 375451 CDS YP_771747.1 115345565 4311937 complement(35608..36084) 1 NC_008386.1 hypothetical protein 36084 4311937 RD1_A0038 Roseobacter denitrificans OCh 114 hypothetical protein YP_771747.1 35608 R 375451 CDS YP_771748.1 115345566 4311938 complement(36152..37270) 1 NC_008386.1 2-methylthioadenine synthetase 37270 4311938 RD1_A0039 Roseobacter denitrificans OCh 114 2-methylthioadenine synthetase YP_771748.1 36152 R 375451 CDS YP_771749.1 115345567 4311939 complement(37272..37760) 1 NC_008386.1 hypothetical protein 37760 4311939 RD1_A0040 Roseobacter denitrificans OCh 114 hypothetical protein YP_771749.1 37272 R 375451 CDS YP_771750.1 115345568 4311940 complement(37738..39483) 1 NC_008386.1 hypothetical protein 39483 4311940 RD1_A0041 Roseobacter denitrificans OCh 114 hypothetical protein YP_771750.1 37738 R 375451 CDS YP_771751.1 115345569 4311941 complement(39480..40715) 1 NC_008386.1 RC169 40715 4311941 RD1_A0043 Roseobacter denitrificans OCh 114 RC169 YP_771751.1 39480 R 375451 CDS YP_771752.1 115345570 4311942 complement(40781..41059) 1 NC_008386.1 hypothetical protein 41059 4311942 RD1_A0044 Roseobacter denitrificans OCh 114 hypothetical protein YP_771752.1 40781 R 375451 CDS YP_771753.1 115345571 4311943 complement(41001..41819) 1 NC_008386.1 from OMNI|NT01MC3169; hypothetical protein 41819 4311943 RD1_A0045 Roseobacter denitrificans OCh 114 hypothetical protein YP_771753.1 41001 R 375451 CDS YP_771754.1 115345572 4311944 41892..43037 1 NC_008386.1 exonuclease SbcD, putative 43037 4311944 RD1_A0046 Roseobacter denitrificans OCh 114 exonuclease SbcD, putative YP_771754.1 41892 D 375451 CDS YP_771755.1 115345573 4311945 43034..46093 1 NC_008386.1 exonuclease SbcC, putative 46093 4311945 RD1_A0047 Roseobacter denitrificans OCh 114 exonuclease SbcC, putative YP_771755.1 43034 D 375451 CDS YP_771756.1 115345574 4311946 46109..46399 1 NC_008386.1 hypothetical protein 46399 4311946 RD1_A0048 Roseobacter denitrificans OCh 114 hypothetical protein YP_771756.1 46109 D 375451 CDS YP_771757.1 115345575 4311947 complement(46690..47658) 1 NC_008386.1 hypothetical protein 47658 4311947 RD1_A0049 Roseobacter denitrificans OCh 114 hypothetical protein YP_771757.1 46690 R 375451 CDS YP_771758.1 115345576 4311948 complement(47573..48919) 1 NC_008386.1 hypothetical protein 48919 4311948 RD1_A0050 Roseobacter denitrificans OCh 114 hypothetical protein YP_771758.1 47573 R 375451 CDS YP_771759.1 115345577 4311949 complement(49284..50192) 1 NC_008386.1 tyrosine recombinase 50192 xerD 4311949 xerD Roseobacter denitrificans OCh 114 tyrosine recombinase YP_771759.1 49284 R 375451 CDS YP_771760.1 115345578 4311970 complement(50313..50930) 1 NC_008386.1 hypothetical protein 50930 4311970 RD1_A0052 Roseobacter denitrificans OCh 114 hypothetical protein YP_771760.1 50313 R 375451 CDS YP_771761.1 115345579 4311971 51026..51199 1 NC_008386.1 hypothetical protein 51199 4311971 RD1_A0053 Roseobacter denitrificans OCh 114 hypothetical protein YP_771761.1 51026 D 375451 CDS YP_771762.1 115345580 4311972 52602..60155 1 NC_008386.1 iron-regulated protein frpC, putative 60155 frpC 4311972 frpC Roseobacter denitrificans OCh 114 iron-regulated protein frpC, putative YP_771762.1 52602 D 375451 CDS YP_771763.1 115345581 4311973 60127..60360 1 NC_008386.1 hypothetical protein 60360 4311973 RD1_A0055 Roseobacter denitrificans OCh 114 hypothetical protein YP_771763.1 60127 D 375451 CDS YP_771764.1 115345582 4311974 60546..60863 1 NC_008386.1 hypothetical protein 60863 4311974 RD1_A0056 Roseobacter denitrificans OCh 114 hypothetical protein YP_771764.1 60546 D 375451 CDS YP_771765.1 115345583 4311975 60980..61171 1 NC_008386.1 RC227 61171 4311975 RD1_A0057 Roseobacter denitrificans OCh 114 RC227 YP_771765.1 60980 D 375451 CDS YP_771766.1 115345584 4311976 complement(61210..61914) 1 NC_008386.1 transposase, putative 61914 4311976 RD1_A0058 Roseobacter denitrificans OCh 114 transposase, putative YP_771766.1 61210 R 375451 CDS YP_771767.1 115345585 4311977 61916..62677 1 NC_008386.1 putative transposase, ATP-binding component 62677 4311977 RD1_A0059 Roseobacter denitrificans OCh 114 putative transposase, ATP-binding component YP_771767.1 61916 D 375451 CDS YP_771768.1 115345586 4311978 complement(63041..63454) 1 NC_008386.1 thermonuclease, putative 63454 4311978 RD1_A0060 Roseobacter denitrificans OCh 114 thermonuclease, putative YP_771768.1 63041 R 375451 CDS YP_771769.1 115345587 4311979 complement(63552..64160) 1 NC_008386.1 ardC-like protein 64160 4311979 RD1_A0061 Roseobacter denitrificans OCh 114 ardC-like protein YP_771769.1 63552 R 375451 CDS YP_771770.1 115345588 4311980 complement(64309..66237) 1 NC_008386.1 hypothetical protein 66237 4311980 RD1_A0062 Roseobacter denitrificans OCh 114 hypothetical protein YP_771770.1 64309 R 375451 CDS YP_771771.1 115345589 4311981 66481..67182 1 NC_008386.1 succinoglycan biosynthesis protein ExoI 67182 exoI 4311981 exoI Roseobacter denitrificans OCh 114 succinoglycan biosynthesis protein ExoI YP_771771.1 66481 D 375451 CDS YP_771772.1 115345590 4311983 67601..67930 1 NC_008386.1 hypothetical protein 67930 4311983 RD1_A0065 Roseobacter denitrificans OCh 114 hypothetical protein YP_771772.1 67601 D 375451 CDS YP_771773.1 115345591 4311984 68408..68989 1 NC_008386.1 transposon resolvase 68989 tnp 4311984 tnp Roseobacter denitrificans OCh 114 transposon resolvase YP_771773.1 68408 D 375451 CDS YP_771774.1 115345592 4311985 69705..70049 1 NC_008386.1 hypothetical protein 70049 4311985 RD1_A0067 Roseobacter denitrificans OCh 114 hypothetical protein YP_771774.1 69705 D 375451 CDS YP_771775.1 115345593 4311986 complement(69819..70151) 1 NC_008386.1 hypothetical protein 70151 4311986 RD1_A0068 Roseobacter denitrificans OCh 114 hypothetical protein YP_771775.1 69819 R 375451 CDS YP_771776.1 115345594 4311987 complement(70063..70485) 1 NC_008386.1 succinoglycan biosynthesis protein Ex 70485 4311987 RD1_A0069 Roseobacter denitrificans OCh 114 succinoglycan biosynthesis protein Ex YP_771776.1 70063 R 375451 CDS YP_771777.1 115345595 4311988 complement(70616..71179) 1 NC_008386.1 hypothetical protein 71179 4311988 RD1_A0070 Roseobacter denitrificans OCh 114 hypothetical protein YP_771777.1 70616 R 375451 CDS YP_771778.1 115345596 4311989 71829..72164 1 NC_008386.1 hypothetical protein 72164 4311989 RD1_A0071 Roseobacter denitrificans OCh 114 hypothetical protein YP_771778.1 71829 D 375451 CDS YP_771779.1 115345597 4311990 72419..74314 1 NC_008386.1 plasmid stabilization protein, putative 74314 4311990 RD1_A0072 Roseobacter denitrificans OCh 114 plasmid stabilization protein, putative YP_771779.1 72419 D 375451 CDS YP_771780.1 115345598 4311991 74414..74755 1 NC_008386.1 hypothetical protein 74755 4311991 RD1_A0073 Roseobacter denitrificans OCh 114 hypothetical protein YP_771780.1 74414 D 375451 CDS YP_771781.1 115345599 4311992 74755..75591 1 NC_008386.1 hypothetical protein 75591 4311992 RD1_A0074 Roseobacter denitrificans OCh 114 hypothetical protein YP_771781.1 74755 D 375451 CDS YP_771782.1 115345600 4311993 complement(75564..75863) 1 NC_008386.1 hypothetical protein 75863 4311993 RD1_A0075 Roseobacter denitrificans OCh 114 hypothetical protein YP_771782.1 75564 R 375451 CDS YP_771783.1 115345601 4311994 complement(75736..76257) 1 NC_008386.1 hypothetical protein 76257 4311994 RD1_A0076 Roseobacter denitrificans OCh 114 hypothetical protein YP_771783.1 75736 R 375451 CDS YP_771784.1 115345602 4311995 75934..76443 1 NC_008386.1 hypothetical protein 76443 4311995 RD1_A0077 Roseobacter denitrificans OCh 114 hypothetical protein YP_771784.1 75934 D 375451 CDS YP_771785.1 115345603 4311996 76587..76832 1 NC_008386.1 30S ribosomal protein S3, putative 76832 rpsC 4311996 rpsC Roseobacter denitrificans OCh 114 30S ribosomal protein S3, putative YP_771785.1 76587 D 375451 CDS YP_771786.1 115345604 4311997 76832..77248 1 NC_008386.1 hypothetical protein 77248 4311997 RD1_A0079 Roseobacter denitrificans OCh 114 hypothetical protein YP_771786.1 76832 D 375451 CDS YP_771787.1 115345605 4311998 77368..77481 1 NC_008386.1 hypothetical protein 77481 4311998 RD1_A0080 Roseobacter denitrificans OCh 114 hypothetical protein YP_771787.1 77368 D 375451 CDS YP_771788.1 115345606 4311999 complement(77633..77725) 1 NC_008386.1 hypothetical protein 77725 4311999 RD1_A0081 Roseobacter denitrificans OCh 114 hypothetical protein YP_771788.1 77633 R 375451 CDS YP_771789.1 115345607 4312000 complement(77799..78023) 1 NC_008386.1 hypothetical protein 78023 4312000 RD1_A0082 Roseobacter denitrificans OCh 114 hypothetical protein YP_771789.1 77799 R 375451 CDS YP_771790.1 115345608 4312001 78076..78573 1 NC_008386.1 RC183 78573 4312001 RD1_A0083 Roseobacter denitrificans OCh 114 RC183 YP_771790.1 78076 D 375451 CDS YP_771791.1 115345609 4312002 79343..80545 1 NC_008386.1 drug resistance transporter Bcr 80545 4312002 RD1_A0084 Roseobacter denitrificans OCh 114 drug resistance transporter Bcr YP_771791.1 79343 D 375451 CDS YP_771792.1 115345610 4312003 complement(81274..82236) 1 NC_008386.1 pirin protein, putative 82236 4312003 RD1_A0085 Roseobacter denitrificans OCh 114 pirin protein, putative YP_771792.1 81274 R 375451 CDS YP_771793.1 115345611 4312004 complement(82315..82956) 1 NC_008386.1 phosphoglycerate mutase domain-containing protein 82956 4312004 RD1_A0086 Roseobacter denitrificans OCh 114 phosphoglycerate mutase domain-containing protein YP_771793.1 82315 R 375451 CDS YP_771794.1 115345612 4312005 complement(83021..85210) 1 NC_008386.1 isoquinoline 1-oxidoreductase 85210 4312005 RD1_A0087 Roseobacter denitrificans OCh 114 isoquinoline 1-oxidoreductase YP_771794.1 83021 R 375451 CDS YP_771795.1 115345613 4312006 complement(85212..85664) 1 NC_008386.1 isoquinoline 1-oxidoreductase 85664 iorA 4312006 iorA Roseobacter denitrificans OCh 114 isoquinoline 1-oxidoreductase YP_771795.1 85212 R 375451 CDS YP_771796.1 115345614 4312007 complement(85749..87347) 1 NC_008386.1 major facilitator superfamily protein 87347 4312007 RD1_A0089 Roseobacter denitrificans OCh 114 major facilitator superfamily protein YP_771796.1 85749 R 375451 CDS YP_771797.1 115345615 4312016 complement(87331..87630) 1 NC_008386.1 hypothetical protein 87630 4312016 RD1_A0090 Roseobacter denitrificans OCh 114 hypothetical protein YP_771797.1 87331 R 375451 CDS YP_771798.1 115345616 4312017 complement(87690..88193) 1 NC_008386.1 DNA protection during starvation protein, putative 88193 dps 4312017 dps Roseobacter denitrificans OCh 114 DNA protection during starvation protein, putative YP_771798.1 87690 R 375451 CDS YP_771799.1 115345617 4312018 complement(88309..88755) 1 NC_008386.1 RC145 88755 4312018 RD1_A0092 Roseobacter denitrificans OCh 114 RC145 YP_771799.1 88309 R 375451 CDS YP_771800.1 115345618 4312019 complement(88721..90025) 1 NC_008386.1 hypothetical protein 90025 4312019 RD1_A0093 Roseobacter denitrificans OCh 114 hypothetical protein YP_771800.1 88721 R 375451 CDS YP_771801.1 115345619 4312020 complement(90092..90799) 1 NC_008386.1 putative hydrolase 90799 4312020 RD1_A0094 Roseobacter denitrificans OCh 114 putative hydrolase YP_771801.1 90092 R 375451 CDS YP_771802.1 115345620 4312022 complement(90824..91069) 1 NC_008386.1 hypothetical protein 91069 4312022 RD1_A0096 Roseobacter denitrificans OCh 114 hypothetical protein YP_771802.1 90824 R 375451 CDS YP_771803.1 115345621 4312023 complement(91168..91794) 1 NC_008386.1 RC150 91794 4312023 RD1_A0097 Roseobacter denitrificans OCh 114 RC150 YP_771803.1 91168 R 375451 CDS YP_771804.1 115345622 4312024 complement(91806..92816) 1 NC_008386.1 putative dioxygenase 92816 4312024 RD1_A0098 Roseobacter denitrificans OCh 114 putative dioxygenase YP_771804.1 91806 R 375451 CDS YP_771805.1 115345623 4312025 92846..93760 1 NC_008386.1 LysR family transcriptional regulator 93760 4312025 RD1_A0099 Roseobacter denitrificans OCh 114 LysR family transcriptional regulator YP_771805.1 92846 D 375451 CDS YP_771806.1 115345624 4312026 complement(93840..94742) 1 NC_008386.1 AraC family transcription regulator 94742 4312026 RD1_A0100 Roseobacter denitrificans OCh 114 AraC family transcription regulator YP_771806.1 93840 R 375451 CDS YP_771807.1 115345625 4312027 96004..96573 1 NC_008386.1 AraC family transcriptional regulator 96573 4312027 RD1_A0101 Roseobacter denitrificans OCh 114 AraC family transcriptional regulator YP_771807.1 96004 D 375451 CDS YP_771808.1 115345626 4312028 96937..97056 1 NC_008386.1 hypothetical protein 97056 4312028 RD1_A0104 Roseobacter denitrificans OCh 114 hypothetical protein YP_771808.1 96937 D 375451 CDS YP_771809.1 115345627 4312029 97386..98282 1 NC_008386.1 ArdC protein 98282 4312029 RD1_A0105 Roseobacter denitrificans OCh 114 ArdC protein YP_771809.1 97386 D 375451 CDS YP_771810.1 115345628 4312030 98282..98869 1 NC_008386.1 RC187 98869 4312030 RD1_A0106 Roseobacter denitrificans OCh 114 RC187 YP_771810.1 98282 D 375451 CDS YP_771811.1 115345629 4312031 98961..99095 1 NC_008386.1 hypothetical protein 99095 4312031 RD1_A0107 Roseobacter denitrificans OCh 114 hypothetical protein YP_771811.1 98961 D 375451 CDS YP_771812.1 115345630 4312032 complement(99308..99955) 1 NC_008386.1 hypothetical protein 99955 4312032 RD1_A0108 Roseobacter denitrificans OCh 114 hypothetical protein YP_771812.1 99308 R 375451 CDS YP_771813.1 115345631 4312033 complement(99942..100655) 1 NC_008386.1 putative crown gall tumor protein VirC1 100655 virC1 4312033 virC1 Roseobacter denitrificans OCh 114 putative crown gall tumor protein VirC1 YP_771813.1 99942 R 375451 CDS YP_771814.1 115345632 4312034 100818..100955 1 NC_008386.1 hypothetical protein 100955 4312034 RD1_A0110 Roseobacter denitrificans OCh 114 hypothetical protein YP_771814.1 100818 D 375451 CDS YP_771815.1 115345633 4312035 101221..101655 1 NC_008386.1 type IV secretion system T-DNA border endonuclease VirD1 101655 virD1 4312035 virD1 Roseobacter denitrificans OCh 114 type IV secretion system T-DNA border endonuclease VirD1 YP_771815.1 101221 D 375451 CDS YP_771816.1 115345634 4312036 101856..104000 1 NC_008386.1 VirD2 protein 104000 virD2 4312036 virD2 Roseobacter denitrificans OCh 114 VirD2 protein YP_771816.1 101856 D 375451 CDS YP_771817.1 115345635 4311930 104010..106175 1 NC_008386.1 coupling protein TraG/VirD4 family; type IV secretion system protein VirD4 106175 4311930 RD1_A0114 Roseobacter denitrificans OCh 114 type IV secretion system protein VirD4 YP_771817.1 104010 D 375451 CDS YP_771818.1 115345637 4312037 780..1076 1 NC_008387.1 hypothetical protein 1076 4312037 RD1_B0001 Roseobacter denitrificans OCh 114 hypothetical protein YP_771818.1 780 D 375451 CDS YP_771819.1 115345638 4312038 1073..1288 1 NC_008387.1 hypothetical protein 1288 4312038 RD1_B0002 Roseobacter denitrificans OCh 114 hypothetical protein YP_771819.1 1073 D 375451 CDS YP_771820.1 115345639 4312039 1298..3151 1 NC_008387.1 hypothetical protein 3151 4312039 RD1_B0003 Roseobacter denitrificans OCh 114 hypothetical protein YP_771820.1 1298 D 375451 CDS YP_771821.1 115345640 4312040 3412..4581 1 NC_008387.1 oxidoreductase, putative 4581 4312040 RD1_B0004 Roseobacter denitrificans OCh 114 oxidoreductase, putative YP_771821.1 3412 D 375451 CDS YP_771822.1 115345641 4312041 4578..5579 1 NC_008387.1 hypothetical protein 5579 4312041 RD1_B0005 Roseobacter denitrificans OCh 114 hypothetical protein YP_771822.1 4578 D 375451 CDS YP_771823.1 115345642 4312042 5579..6835 1 NC_008387.1 glycosyl transferase, putative 6835 4312042 RD1_B0006 Roseobacter denitrificans OCh 114 glycosyl transferase, putative YP_771823.1 5579 D 375451 CDS YP_771824.1 115345643 4312043 complement(6830..7768) 1 NC_008387.1 glycosyl transferase, putative 7768 4312043 RD1_B0007 Roseobacter denitrificans OCh 114 glycosyl transferase, putative YP_771824.1 6830 R 375451 CDS YP_771825.1 115345644 4312044 complement(7855..9468) 1 NC_008387.1 hypothetical protein 9468 4312044 RD1_B0008 Roseobacter denitrificans OCh 114 hypothetical protein YP_771825.1 7855 R 375451 CDS YP_771826.1 115345645 4312045 9616..10605 1 NC_008387.1 glycosyl transferase, putative 10605 4312045 RD1_B0009 Roseobacter denitrificans OCh 114 glycosyl transferase, putative YP_771826.1 9616 D 375451 CDS YP_771827.1 115345646 4312046 10606..11451 1 NC_008387.1 sulfotransferase, putative 11451 4312046 RD1_B0010 Roseobacter denitrificans OCh 114 sulfotransferase, putative YP_771827.1 10606 D 375451 CDS YP_771828.1 115345647 4312047 11444..12412 1 NC_008387.1 glycosyl transferase, putative 12412 4312047 RD1_B0011 Roseobacter denitrificans OCh 114 glycosyl transferase, putative YP_771828.1 11444 D 375451 CDS YP_771829.1 115345648 4312048 12409..13782 1 NC_008387.1 polysaccharide biosynthesis protein, putative 13782 4312048 RD1_B0012 Roseobacter denitrificans OCh 114 polysaccharide biosynthesis protein, putative YP_771829.1 12409 D 375451 CDS YP_771830.1 115345649 4312049 13951..15846 1 NC_008387.1 ABC transporter, putative 15846 4312049 RD1_B0013 Roseobacter denitrificans OCh 114 ABC transporter, putative YP_771830.1 13951 D 375451 CDS YP_771831.1 115345650 4312050 15843..17156 1 NC_008387.1 HlyD family secretion protein 17156 4312050 RD1_B0014 Roseobacter denitrificans OCh 114 HlyD family secretion protein YP_771831.1 15843 D 375451 CDS YP_771832.1 115345651 4312051 17418..18104 1 NC_008387.1 PAP2 superfamily protein, putative 18104 4312051 RD1_B0015 Roseobacter denitrificans OCh 114 PAP2 superfamily protein, putative YP_771832.1 17418 D 375451 CDS YP_771833.1 115345652 4312052 complement(18171..19541) 1 NC_008387.1 phosphomannomutase 19541 noeK 4312052 noeK Roseobacter denitrificans OCh 114 phosphomannomutase YP_771833.1 18171 R 375451 CDS YP_771834.1 115345653 4312053 complement(19553..20431) 1 NC_008387.1 glucose-1-phosphate thymidylyltransferase 20431 rfbA 4312053 rfbA Roseobacter denitrificans OCh 114 glucose-1-phosphate thymidylyltransferase YP_771834.1 19553 R 375451 CDS YP_771835.1 115345654 4312054 complement(20444..21367) 1 NC_008387.1 dTDP-4-dehydrorhamnose reductase 21367 rfbD 4312054 rfbD Roseobacter denitrificans OCh 114 dTDP-4-dehydrorhamnose reductase YP_771835.1 20444 R 375451 CDS YP_771836.1 115345655 4312055 complement(21286..22362) 1 NC_008387.1 dTDP-glucose 4,6-dehydratase 22362 rfbB 4312055 rfbB Roseobacter denitrificans OCh 114 dTDP-glucose 4,6-dehydratase YP_771836.1 21286 R 375451 CDS YP_771837.1 115345656 4312056 complement(22359..22955) 1 NC_008387.1 dTDP-4-dehydrorhamnose 3,5-epimerase 22955 rfbC 4312056 rfbC Roseobacter denitrificans OCh 114 dTDP-4-dehydrorhamnose 3,5-epimerase YP_771837.1 22359 R 375451 CDS YP_771838.1 115345657 4312057 complement(23106..23927) 1 NC_008387.1 exopolysaccharide biosynthesis 23927 4312057 RD1_B0021 Roseobacter denitrificans OCh 114 exopolysaccharide biosynthesis YP_771838.1 23106 R 375451 CDS YP_771839.1 115345658 4312058 complement(23948..25495) 1 NC_008387.1 putative polysaccharide chain length determinant protein 25495 4312058 RD1_B0022 Roseobacter denitrificans OCh 114 putative polysaccharide chain length determinant protein YP_771839.1 23948 R 375451 CDS YP_771840.1 115345659 4312059 complement(25492..26373) 1 NC_008387.1 general secretion pathway protein A 26373 exeA 4312059 exeA Roseobacter denitrificans OCh 114 general secretion pathway protein A YP_771840.1 25492 R 375451 CDS YP_771841.1 115345660 4312060 26834..27535 1 NC_008387.1 sugar transferase 27535 4312060 RD1_B0024 Roseobacter denitrificans OCh 114 sugar transferase YP_771841.1 26834 D 375451 CDS YP_771842.1 115345661 4312061 27786..30185 1 NC_008387.1 TPR repeat-containing protein 30185 4312061 RD1_B0025 Roseobacter denitrificans OCh 114 TPR repeat-containing protein YP_771842.1 27786 D 375451 CDS YP_771843.1 115345662 4312062 30373..30978 1 NC_008387.1 polysaccharide biosynthesis protein 30978 4312062 RD1_B0026 Roseobacter denitrificans OCh 114 polysaccharide biosynthesis protein YP_771843.1 30373 D 375451 CDS YP_771844.1 115345663 4312063 30941..32383 1 NC_008387.1 hypothetical protein 32383 4312063 RD1_B0027 Roseobacter denitrificans OCh 114 hypothetical protein YP_771844.1 30941 D 375451 CDS YP_771845.1 115345664 4312064 32417..33115 1 NC_008387.1 rhomboid family protein, putative 33115 4312064 RD1_B0028 Roseobacter denitrificans OCh 114 rhomboid family protein, putative YP_771845.1 32417 D 375451 CDS YP_771846.1 115345665 4312065 complement(33190..35100) 1 NC_008387.1 hypothetical protein 35100 4312065 RD1_B0029 Roseobacter denitrificans OCh 114 hypothetical protein YP_771846.1 33190 R 375451 CDS YP_771847.1 115345666 4312066 complement(35183..36895) 1 NC_008387.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 36895 sat 4312066 sat Roseobacter denitrificans OCh 114 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein YP_771847.1 35183 R 375451 CDS YP_771848.1 115345667 4312067 37360..38409 1 NC_008387.1 von Willebrand factor type A domain-containing protein 38409 4312067 RD1_B0031 Roseobacter denitrificans OCh 114 von Willebrand factor type A domain-containing protein YP_771848.1 37360 D 375451 CDS YP_771849.1 115345668 4312068 38523..39299 1 NC_008387.1 TPR domain-containing protein 39299 4312068 RD1_B0032 Roseobacter denitrificans OCh 114 TPR domain-containing protein YP_771849.1 38523 D 375451 CDS YP_771850.1 115345669 4312069 38935..40548 1 NC_008387.1 TPR domain-containing protein 40548 4312069 RD1_B0033 Roseobacter denitrificans OCh 114 TPR domain-containing protein YP_771850.1 38935 D 375451 CDS YP_771851.1 115345670 4312070 complement(40696..41337) 1 NC_008387.1 hypothetical protein 41337 4312070 RD1_B0034 Roseobacter denitrificans OCh 114 hypothetical protein YP_771851.1 40696 R 375451 CDS YP_771852.1 115345671 4312071 complement(41786..42463) 1 NC_008387.1 hypothetical protein 42463 4312071 RD1_B0035 Roseobacter denitrificans OCh 114 hypothetical protein YP_771852.1 41786 R 375451 CDS YP_771853.1 115345672 4312072 complement(42760..44181) 1 NC_008387.1 mannose-1-phosphate guanylyltransferase 44181 xanB 4312072 xanB Roseobacter denitrificans OCh 114 mannose-1-phosphate guanylyltransferase YP_771853.1 42760 R 375451 CDS YP_771854.1 115345673 4312073 44427..46031 1 NC_008387.1 hypothetical protein 46031 4312073 RD1_B0037 Roseobacter denitrificans OCh 114 hypothetical protein YP_771854.1 44427 D 375451 CDS YP_771855.1 115345674 4312074 46730..47722 1 NC_008387.1 acyltransferase, putative 47722 4312074 RD1_B0038 Roseobacter denitrificans OCh 114 acyltransferase, putative YP_771855.1 46730 D 375451 CDS YP_771856.1 115345675 4312075 complement(47874..48629) 1 NC_008387.1 hypothetical protein 48629 4312075 RD1_B0039 Roseobacter denitrificans OCh 114 hypothetical protein YP_771856.1 47874 R 375451 CDS YP_771857.1 115345676 4312076 complement(48634..49662) 1 NC_008387.1 UDP-glucose 4-epimerase 49662 galE 4312076 galE Roseobacter denitrificans OCh 114 UDP-glucose 4-epimerase YP_771857.1 48634 R 375451 CDS YP_771858.1 115345677 4312077 49793..50500 1 NC_008387.1 hypothetical protein 50500 4312077 RD1_B0041 Roseobacter denitrificans OCh 114 hypothetical protein YP_771858.1 49793 D 375451 CDS YP_771859.1 115345678 4312078 50466..50867 1 NC_008387.1 hypothetical protein 50867 4312078 RD1_B0042 Roseobacter denitrificans OCh 114 hypothetical protein YP_771859.1 50466 D 375451 CDS YP_771860.1 115345679 4312079 50950..51939 1 NC_008387.1 UDP-glucuronate 5'-epimerase 51939 4312079 RD1_B0043 Roseobacter denitrificans OCh 114 UDP-glucuronate 5'-epimerase YP_771860.1 50950 D 375451 CDS YP_771861.1 115345680 4312080 complement(52178..52312) 1 NC_008387.1 hypothetical protein 52312 4312080 RD1_B0044 Roseobacter denitrificans OCh 114 hypothetical protein YP_771861.1 52178 R 375451 CDS YP_771862.1 115345681 4312081 52412..53578 1 NC_008387.1 hypothetical protein 53578 4312081 RD1_B0046 Roseobacter denitrificans OCh 114 hypothetical protein YP_771862.1 52412 D 375451 CDS YP_771863.1 115345682 4312082 complement(53605..54585) 1 NC_008387.1 chromosome partitioning protein, putative 54585 4312082 RD1_B0047 Roseobacter denitrificans OCh 114 chromosome partitioning protein, putative YP_771863.1 53605 R 375451 CDS YP_771864.1 115345683 4312083 complement(54712..56103) 1 NC_008387.1 putative replication protein 56103 rep 4312083 rep Roseobacter denitrificans OCh 114 putative replication protein YP_771864.1 54712 R 375451 CDS YP_771865.1 115345684 4312084 56583..57590 1 NC_008387.1 hypothetical protein 57590 repA 4312084 repA Roseobacter denitrificans OCh 114 hypothetical protein YP_771865.1 56583 D 375451 CDS YP_771866.1 115345685 4312085 57733..58776 1 NC_008387.1 glycosyl transferase group 2 family protein 58776 4312085 RD1_B0050 Roseobacter denitrificans OCh 114 glycosyl transferase group 2 family protein YP_771866.1 57733 D 375451 CDS YP_771867.1 115345686 4312086 complement(58832..60127) 1 NC_008387.1 hypothetical protein 60127 4312086 RD1_B0051 Roseobacter denitrificans OCh 114 hypothetical protein YP_771867.1 58832 R 375451 CDS YP_771868.1 115345687 4312087 60752..62851 1 NC_008387.1 hypothetical protein 62851 4312087 RD1_B0052 Roseobacter denitrificans OCh 114 hypothetical protein YP_771868.1 60752 D 375451 CDS YP_771869.1 115345688 4312088 62817..64121 1 NC_008387.1 rhizobiocin 64121 4312088 RD1_B0053 Roseobacter denitrificans OCh 114 rhizobiocin YP_771869.1 62817 D 375451 CDS YP_771870.1 115345689 4312089 64484..64819 1 NC_008387.1 hypothetical protein 64819 4312089 RD1_B0054 Roseobacter denitrificans OCh 114 hypothetical protein YP_771870.1 64484 D 375451 CDS YP_771871.1 115345690 4312090 65438..67375 1 NC_008387.1 acyltransferase family protein 67375 4312090 RD1_B0055 Roseobacter denitrificans OCh 114 acyltransferase family protein YP_771871.1 65438 D 375451 CDS YP_771872.1 115345691 4312091 67499..68419 1 NC_008387.1 hypothetical protein 68419 4312091 RD1_B0056 Roseobacter denitrificans OCh 114 hypothetical protein YP_771872.1 67499 D 375451 CDS YP_771873.1 115345692 4312092 complement(68519..69211) 1 NC_008387.1 UDP-glucose 6-dehydrogenase 69211 ugd 4312092 ugd Roseobacter denitrificans OCh 114 UDP-glucose 6-dehydrogenase YP_771873.1 68519 R 375451 CDS YP_771874.1 115345695 4312093 complement(617..1168) 1 NC_008388.1 hypothetical protein 1168 4312093 RD1_C0001 Roseobacter denitrificans OCh 114 hypothetical protein YP_771874.1 617 R 375451 CDS YP_771875.1 115345696 4312094 complement(1189..2598) 1 NC_008388.1 virD4 protein, putative 2598 virD 4312094 virD Roseobacter denitrificans OCh 114 virD4 protein, putative YP_771875.1 1189 R 375451 CDS YP_771876.1 115345697 4312095 2434..3084 1 NC_008388.1 hypothetical protein 3084 4312095 RD1_C0003 Roseobacter denitrificans OCh 114 hypothetical protein YP_771876.1 2434 D 375451 CDS YP_771877.1 115345698 4312096 complement(2841..3137) 1 NC_008388.1 mobilization protein 3137 4312096 RD1_C0004 Roseobacter denitrificans OCh 114 mobilization protein YP_771877.1 2841 R 375451 CDS YP_771878.1 115345699 4312097 complement(3415..3702) 1 NC_008388.1 myosin I heavy chain kinase 3702 4312097 RD1_C0005 Roseobacter denitrificans OCh 114 myosin I heavy chain kinase YP_771878.1 3415 R 375451 CDS YP_771879.1 115345700 4312098 3761..5044 1 NC_008388.1 mobilization protein 5044 mobL 4312098 mobL Roseobacter denitrificans OCh 114 mobilization protein YP_771879.1 3761 D 375451 CDS YP_771880.1 115345701 4312099 complement(5038..5385) 1 NC_008388.1 hypothetical protein 5385 4312099 RD1_C0007 Roseobacter denitrificans OCh 114 hypothetical protein YP_771880.1 5038 R 375451 CDS YP_771881.1 115345702 4312100 5623..7875 1 NC_008388.1 hypothetical protein 7875 4312100 RD1_C0008 Roseobacter denitrificans OCh 114 hypothetical protein YP_771881.1 5623 D 375451 CDS YP_771882.1 115345703 4312101 7844..8755 1 NC_008388.1 hypothetical protein 8755 4312101 RD1_C0009 Roseobacter denitrificans OCh 114 hypothetical protein YP_771882.1 7844 D 375451 CDS YP_771883.1 115345704 4312102 9762..10301 1 NC_008388.1 site-specific recombinase 10301 4312102 RD1_C0010 Roseobacter denitrificans OCh 114 site-specific recombinase YP_771883.1 9762 D 375451 CDS YP_771884.1 115345705 4312103 10386..11681 1 NC_008388.1 hypothetical protein 11681 4312103 RD1_C0011 Roseobacter denitrificans OCh 114 hypothetical protein YP_771884.1 10386 D 375451 CDS YP_771885.1 115345706 4312104 11666..12763 1 NC_008388.1 hypothetical protein 12763 4312104 RD1_C0012 Roseobacter denitrificans OCh 114 hypothetical protein YP_771885.1 11666 D 375451 CDS YP_771886.1 115345707 4312105 complement(12770..13630) 1 NC_008388.1 hypothetical protein 13630 4312105 RD1_C0013 Roseobacter denitrificans OCh 114 hypothetical protein YP_771886.1 12770 R 375451 CDS YP_771887.1 115345708 4312106 complement(13627..14811) 1 NC_008388.1 DNA-cytosine methyltransferase, putative 14811 4312106 RD1_C0014 Roseobacter denitrificans OCh 114 DNA-cytosine methyltransferase, putative YP_771887.1 13627 R 375451 CDS YP_771888.1 115345709 4312107 complement(14890..15168) 1 NC_008388.1 partition protein ParB 15168 4312107 RD1_C0015 Roseobacter denitrificans OCh 114 partition protein ParB YP_771888.1 14890 R 375451 CDS YP_771889.1 115345710 4312108 complement(15152..15820) 1 NC_008388.1 partition protein ParA 15820 parA 4312108 parA Roseobacter denitrificans OCh 114 partition protein ParA YP_771889.1 15152 R 375451 CDS YP_771890.1 115345713 4312109 complement(838..936) 1 NC_008389.1 hypothetical protein 936 4312109 RD1_D0001 Roseobacter denitrificans OCh 114 hypothetical protein YP_771890.1 838 R 375451 CDS YP_771891.1 115345714 4312110 983..1570 1 NC_008389.1 oxidoreductase, putative 1570 4312110 RD1_D0002 Roseobacter denitrificans OCh 114 oxidoreductase, putative YP_771891.1 983 D 375451 CDS YP_771892.1 115345715 4312111 1855..2859 1 NC_008389.1 hypothetical protein 2859 4312111 RD1_D0003 Roseobacter denitrificans OCh 114 hypothetical protein YP_771892.1 1855 D 375451 CDS YP_771893.1 115345716 4312112 2663..3529 1 NC_008389.1 hypothetical protein 3529 4312112 RD1_D0004 Roseobacter denitrificans OCh 114 hypothetical protein YP_771893.1 2663 D 375451 CDS YP_771894.1 115345717 4312113 complement(4109..4621) 1 NC_008389.1 hypothetical protein 4621 4312113 RD1_D0005 Roseobacter denitrificans OCh 114 hypothetical protein YP_771894.1 4109 R 375451 CDS YP_771895.1 115345718 4312021 4784..5047 1 NC_008389.1 hypothetical protein 5047 4312021 RD1_D0006 Roseobacter denitrificans OCh 114 hypothetical protein YP_771895.1 4784 D 375451 CDS