-- dump date 20140620_023157 -- class Genbank::CDS -- table cds_note -- id note YP_002973576.1 KEGG: rso:RSp0654 two component sensor histidine kinase transcription regulator protein; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_002973577.1 KEGG: rso:RSp0655 two component response regulator transcription regulator protein; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_002973578.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: rso:RSp0656 copper resistance transmembrane protein YP_002973579.1 PFAM: copper resistance B precursor; KEGG: rme:Rmet_6113 copper resistance B precursor YP_002973580.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_002973581.1 PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 copper resistance D transmembrane protein YP_002973582.1 PFAM: protein of unknown function DUF411; KEGG: bte:BTH_II0365 RC180 YP_002973583.1 KEGG: rme:Rmet_6120 hypothetical protein YP_002973584.1 PFAM: blue (type 1) copper domain protein; KEGG: rme:Rmet_6116 blue (type 1) copper domain YP_002973586.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_B0394 LysR family transcriptional regulator YP_002973587.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mag:amb1294 cystathionine beta-lyase/cystathionine gamma-synthase YP_002973588.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bte:BTH_I1225 glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein YP_002973589.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cti:RALTA_A0429 glutamate/aspartate transport protein; ABC superfamily, membrane component YP_002973590.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4545 polar amino acid ABC transporter, inner membrane subunit YP_002973591.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0484 putative glutamate/aspartate transport ATP-binding ABC transporter protein YP_002973593.1 PFAM: porin Gram-negative type; KEGG: dac:Daci_0724 porin YP_002973594.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_002973596.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_6210 heavy metal efflux pump CzcA YP_002973597.1 KEGG: pna:Pnap_4763 hypothetical protein YP_002973598.1 PFAM: PemK family protein; KEGG: acr:Acry_3598 transcriptional modulator of MazE/toxin, MazF YP_002973599.1 KEGG: btr:Btr_0446 PemI protein YP_002973600.1 PFAM: Resolvase domain; KEGG: xcb:XC_2601 invertase/recombinase protein YP_002973603.1 KEGG: nha:Nham_4380 copper-translocating P-type ATPase YP_002973605.1 KEGG: azo:azo1681 hypothetical protein YP_002973607.1 PFAM: zinc/iron permease; KEGG: gme:Gmet_0228 hypothetical protein YP_002973609.1 PFAM: outer membrane efflux protein; KEGG: rme:Rmet_6208 outer membrane efflux protein YP_002973610.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_6209 membrane fusion protein cluster 2 YP_002973611.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_6210 heavy metal efflux pump CzcA YP_002973612.1 KEGG: pol:Bpro_2506 hypothetical protein YP_002973613.1 KEGG: pol:Bpro_2507 hypothetical protein YP_002973614.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2492 major facilitator superfamily MFS_1 YP_002973615.1 KEGG: ajs:Ajs_1327 hypothetical protein YP_002973616.1 KEGG: bid:Bind_3015 integral membrane sensor hybrid histidine kinase YP_002973618.1 KEGG: pol:Bpro_2486 transposase Tn3 YP_002973619.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3 YP_002973620.1 PFAM: outer membrane efflux protein; KEGG: rme:Rmet_6208 outer membrane efflux protein YP_002973621.1 PFAM: protein of unknown function DUF156; KEGG: bxe:Bxe_B0049 hypothetical protein YP_002973622.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bam:Bamb_5056 cation diffusion facilitator family transporter YP_002973624.1 KEGG: cti:pRALTA_0657 putative cointegrate resolution protein T YP_002973625.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: rso:RSc2364 hypothetical protein YP_002973626.1 PFAM: integrase family protein; KEGG: cti:pRALTA_0147 integrase/recombinase YP_002973627.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: cti:RALTA_B0237 histone-like nucleoid-structuring protein H-NS YP_002973630.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein YP_002973631.1 KEGG: sbm:Shew185_3893 hypothetical protein YP_002973632.1 KEGG: rpt:Rpal_3157 hypothetical protein YP_002973633.1 KEGG: pna:Pnap_4761 mucin-associated surface protein YP_002973634.1 KEGG: mmr:Mmar10_3077 GumN family protein YP_002973636.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: cti:pRALTA_0149 putative histone-like DNA-binding protein YP_002973639.1 KEGG: atc:AGR_pTi_214 hypothetical protein YP_002973640.1 PFAM: restriction endonuclease; KEGG: bcj:BCAS0716 putative restriction endonuclease YP_002973643.1 KEGG: vvy:VVA0688 hypothetical protein YP_002973644.1 PFAM: integrase family protein; KEGG: rme:Rmet_6086 phage integrase YP_002973645.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bcm:Bcenmc03_6670 cobyrinic acid ac-diamide synthase YP_002973646.1 KEGG: bam:Bamb_6001 ParB-like partition proteins; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002973647.1 KEGG: bmj:BMULJ_05368 replication protein YP_002973648.1 PFAM: UvrD/REP helicase; KEGG: cti:pRALTA_0230 putative ATP-dependent DNA helicase YP_002973649.1 KEGG: bmu:Bmul_5587 hypothetical protein YP_002973650.1 PFAM: flagellar transcriptional activator; KEGG: rso:RSp1413 transcriptional activator FlhD YP_002973651.1 KEGG: rme:Rmet_6313 hypothetical protein YP_002973652.1 KEGG: cti:pRALTA_0228 hypothetical protein YP_002973653.1 KEGG: bac:BamMC406_6799 hypothetical protein YP_002973654.1 KEGG: cti:pRALTA_0226 hypothetical protein YP_002973655.1 KEGG: rme:Rmet_6309 hypothetical protein YP_002973656.1 KEGG: cti:pRALTA_0224 type IV secretory pathway, putative conjugative relaxase YP_002973657.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: cti:pRALTA_0223 type IV secretory pathway, conjugal transfert protein, putative permease YP_002973658.1 KEGG: cti:pRALTA_0222 type IV secretory pathway, entry exclusion protein A (putative protein precursor) YP_002973659.1 PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA0906 ISMca2, transposase, OrfA YP_002973660.1 PFAM: Integrase catalytic region; KEGG: mca:MCA0907 ISMca2, transposase, OrfB YP_002973661.1 PFAM: type II secretion system protein E; KEGG: cti:pRALTA_0218 type IV secretory pathway, conjugal transfert protein; putative chaperonin YP_002973662.1 KEGG: cti:pRALTA_0217 type IV secretory pathway, conjugal transfert protein (putative precursor) YP_002973663.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rme:Rmet_6300 conjugal transfer protein TrbG/VirB9/CagX YP_002973664.1 PFAM: conjugation TrbI family protein; KEGG: cti:pRALTA_0215 type IV secretion system, conjugation efficiency factor YP_002973665.1 KEGG: cti:pRALTA_0214 type IV secretory pathway, putative lytic transglycosylase; putative exported protein YP_002973666.1 KEGG: cti:pRALTA_0213 conserved hypothetical protein; putative PilL-like protein; putative exported protein YP_002973667.1 PFAM: Lytic transglycosylase catalytic; KEGG: cti:pRALTA_0212 putative lytic transglycosylase, invasion protein (PilT homolog) YP_002973668.1 KEGG: cti:pRALTA_0210 conserved hypothetical protein; putative pilus-related protein (BfpG homolog); putative membrane protein YP_002973669.1 KEGG: cti:pRALTA_0209 type IV secretion pathway, outer membrane lipoprotein, putative precursor (PilN homolog) YP_002973670.1 KEGG: reh:PHG350 hypothetical protein YP_002973671.1 KEGG: cti:pRALTA_0206 putative type IV pilus biosynthesis protein; putative PilO homolog; putative precursor YP_002973672.1 PFAM: type II secretion system protein E; KEGG: reh:PHG348 putative traffic warden ATPase YP_002973673.1 PFAM: type II secretion system protein; KEGG: cti:pRALTA_0204 putative type IV secretion apparatus component (PilR homolog) YP_002973674.1 KEGG: cti:pRALTA_0202 putative prepilin type IV pili (PilS homolog) YP_002973675.1 KEGG: cti:pRALTA_0201 conserved hypothetical protein; putative exported protein YP_002973676.1 KEGG: reh:PHG343 putative adhesin precursor YP_002973677.1 KEGG: bac:BamMC406_6557 hypothetical protein YP_002973678.1 PFAM: SCP-like extracellular; KEGG: bvi:Bcep1808_7071 allergen V5/TPX-1-like protein YP_002973679.1 KEGG: bac:BamMC406_6554 hypothetical protein YP_002973681.1 KEGG: cti:pRALTA_0193 hypothetical protein YP_002973682.1 KEGG: rme:Rmet_6283 hypothetical protein YP_002973683.1 KEGG: rme:Rmet_6281 hypothetical protein YP_002973684.1 KEGG: rme:Rmet_6280 hypothetical protein YP_002973685.1 KEGG: reh:PHG336 hypothetical protein YP_002973686.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002973687.1 PFAM: P4 alpha zinc-binding domain protein; SMART: P4 alpha zinc-binding domain protein; KEGG: cti:pRALTA_0187 putative DNA primase YP_002973688.1 KEGG: cti:pRALTA_0186 hypothetical protein YP_002973690.1 KEGG: reh:PHG331 hypothetical protein YP_002973691.1 KEGG: reh:PHG330 hypothetical protein YP_002973692.1 PFAM: helix-turn-helix Fis-type; KEGG: rme:Rmet_6273 helix-turn-helix, fis-type YP_002973693.1 KEGG: bpy:Bphyt_7376 hypothetical protein YP_002973695.1 PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: rme:Rmet_6268 DNA/RNA non-specific endonuclease YP_002973696.1 KEGG: cti:pRALTA_0174 hypothetical protein YP_002973697.1 KEGG: rme:Rmet_6266 hypothetical protein YP_002973698.1 KEGG: rso:RSc1656 hypothetical protein YP_002973702.1 KEGG: amr:AM1_F0154 hypothetical protein YP_002973703.1 KEGG: reh:PHG322 hypothetical protein YP_002973704.1 KEGG: reh:PHG321 putative helicase superfamily I YP_002973705.1 KEGG: cti:pRALTA_0165 hypothetical protein YP_002973706.1 KEGG: rme:Rmet_6246 hypothetical protein YP_002973707.1 KEGG: reh:PHG316 hypothetical protein YP_002973708.1 KEGG: rme:Rmet_6243 hypothetical protein YP_002973709.1 KEGG: rme:Rmet_6241 ParB family protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002973710.1 KEGG: rme:Rmet_6240 hypothetical protein YP_002973711.1 KEGG: bvi:Bcep1808_7095 hypothetical protein YP_002973712.1 KEGG: reh:PHG309 hypothetical protein YP_002973713.1 KEGG: rme:Rmet_6237 hypothetical protein YP_002973714.1 KEGG: reh:PHG307 hypothetical protein YP_002973717.1 PFAM: band 7 protein; KEGG: fps:FP0707 hypothetical protein YP_002973723.1 KEGG: rme:Rmet_6233 putative outer membrane lipoprotein transmembrane YP_002973725.1 KEGG: bvi:Bcep1808_6920 hypothetical protein YP_002973726.1 KEGG: rme:Rmet_6232 hypothetical protein YP_002973727.1 KEGG: reh:PHG302 hypothetical protein YP_002973729.1 KEGG: bch:Bcen2424_6938 hypothetical protein YP_002973730.1 KEGG: reh:PHG301 hypothetical protein YP_002973731.1 KEGG: rme:Rmet_6228 hypothetical protein YP_002973732.1 SMART: AAA ATPase; KEGG: bac:BamMC406_6512 ATPase YP_002973733.1 KEGG: bac:BamMC406_6511 hypothetical protein YP_002973734.1 KEGG: bac:BamMC406_6510 hypothetical protein YP_002973735.1 KEGG: reu:Reut_B3485 hypothetical protein YP_002973738.1 KEGG: bpy:Bphyt_7370 hypothetical protein YP_002973739.1 KEGG: bvi:Bcep1808_6926 hypothetical protein YP_002973741.1 PFAM: protein of unknown function DUF583; KEGG: bac:BamMC406_6794 hypothetical protein YP_002973742.1 KEGG:. YP_002973743.1 KEGG: rme:Rmet_6223 hypothetical protein YP_002973744.1 KEGG: rme:Rmet_6222 hypothetical protein YP_002973745.1 KEGG: reh:PHG292 hypothetical protein YP_002973746.1 KEGG: rme:Rmet_6220 DNA repair exonuclease-like protein YP_002973747.1 KEGG: reh:PHG290 hypothetical protein YP_002973748.1 KEGG: reh:PHG289 hypothetical protein YP_002973749.1 KEGG: cti:pRALTA_0151 hypothetical protein YP_002973750.1 PFAM: transposase Tn3 family protein; KEGG: cti:pRALTA_0655 transposase, Tn3 family YP_002973751.1 PFAM: integrase family protein; KEGG: cti:pRALTA_0656 putative cointegrate resolution protein S / recombinase YP_002973752.1 PFAM: iron permease FTR1; cytochrome c class I; KEGG: rme:Rmet_5945 iron permease FTR1 YP_002973753.1 KEGG: grail3.3073000201; .; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_002973754.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_1242 heavy metal translocating P-type ATPase YP_002973755.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: shn:Shewana3_4320 signal peptidase II YP_002973756.1 KEGG: rso:RS05404 putative signal peptide protein YP_002973757.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS05405 cation efflux system transmembrane protein YP_002973758.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reh:H16_A2186 cobalt-zinc-cadmium resistance membrane-fusion protein YP_002973759.1 KEGG: rme:Rmet_6134 outer membrane efflux protein YP_002973760.1 KEGG: rso:RS05408 hypothetical protein YP_002973761.1 KEGG: reh:H16_B1270 hypothetical membrane associated protein YP_002973762.1 KEGG: bvi:Bcep1808_7265 hypothetical protein YP_002973763.1 KEGG: reu:Reut_C6196 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein YP_002973765.1 KEGG: bvi:Bcep1808_7285 YHS domain-containing protein YP_002973766.1 KEGG: reh:H16_A1977 hypothetical protein YP_002973767.1 KEGG: reh:H16_A1978 hypothetical protein YP_002973768.1 KEGG: ajs:Ajs_1470 hypothetical protein YP_002973769.1 KEGG: dar:Daro_2269 hypothetical protein YP_002973770.1 KEGG: smd:Smed_0214 hypothetical protein YP_002973771.1 KEGG: vpa:VPA0557 hypothetical protein YP_002973772.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2375 ABC-type transport system, ATPase component YP_002973773.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_2373 ABC-type transport system, permease component YP_002973774.1 KEGG: vpa:VPA0561 hypothetical protein YP_002973775.1 PFAM: ABC-1 domain protein; KEGG: bvi:Bcep1808_7271 2-octaprenylphenol hydroxylase YP_002973776.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_002973777.1 PFAM: LemA family protein; KEGG: reu:Reut_C6198 hypothetical protein YP_002973778.1 PFAM: protein of unknown function DUF477; KEGG: reh:H16_A2010 beta-propeller domains of methanol dehydrogenase-type (homolog) YP_002973779.1 PFAM: protein of unknown function DUF477; KEGG: reu:Reut_C6200 hypothetical protein YP_002973780.1 KEGG: ajs:Ajs_1493 hypothetical protein YP_002973781.1 KEGG: rme:Rmet_0477 hypothetical protein YP_002973782.1 PFAM: protein of unknown function DUF344; KEGG: ajs:Ajs_2697 hypothetical protein YP_002973783.1 KEGG: ajs:Ajs_2687 hypothetical protein YP_002973784.1 KEGG: reu:Reut_C6194 FtsH-2 peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002973785.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_6074 integrase, catalytic region YP_002973786.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6073 transposase IS3/IS911 YP_002973787.1 KEGG: lch:Lcho_0146 hypothetical protein YP_002973788.1 PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein YP_002973789.1 KEGG: bph:Bphy_6005 hypothetical protein YP_002973790.1 KEGG: pzu:PHZ_p0147 protein-S-isoprenylcysteine methyltransferase YP_002973791.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein YP_002973792.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_002973793.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_002973795.1 PFAM: Integrase catalytic region; KEGG: mca:MCA0907 ISMca2, transposase, OrfB YP_002973796.1 PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA0906 ISMca2, transposase, OrfA YP_002973797.1 KEGG: pna:Pnap_4542 hypothetical protein YP_002973798.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rpt:Rpal_1042 copper-translocating P-type ATPase YP_002973799.1 PFAM: major facilitator superfamily MFS_1; KEGG: xau:Xaut_4848 major facilitator transporter YP_002973801.1 PFAM: copper resistance protein CopC; KEGG: reh:H16_B2183 copper resistance protein C YP_002973802.1 KEGG: rso:RSp0654 two component sensor histidine kinase transcription regulator protein; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_002973803.1 KEGG: rso:RSp0655 two component response regulator transcription regulator protein; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_002973804.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: rso:RSp0656 copper resistance transmembrane protein YP_002973805.1 PFAM: copper resistance B precursor; KEGG: rso:RSp0657 copper resistance protein B YP_002973806.1 PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC YP_002973807.1 PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 copper resistance D transmembrane protein YP_002973808.1 PFAM: protein of unknown function DUF411; KEGG: bps:BPSS2003 periplasmic protein YP_002973809.1 KEGG: rme:Rmet_6120 hypothetical protein YP_002973810.1 KEGG: cti:pRALTA_0656 putative cointegrate resolution protein S / recombinase YP_002973811.1 SMART: regulatory protein ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein YP_002973812.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A2179 lactoylglutathione lyase YP_002973813.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: cti:pRALTA_0651 putative arsenate reductase (arsenical pump modifier)(low molecular weight phosphotyrosine protein phosphatase) YP_002973814.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: rso:RSp1128 putative arsenate reductase (arsenical PUMP modifier) protein YP_002973815.1 PFAM: major intrinsic protein; KEGG: rso:RS05492 transmembrane ABC transporter protein YP_002973816.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ade:Adeh_1022 tyrosine phosphatase YP_002973817.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: reu:Reut_C6190 major facilitator transporter YP_002973818.1 PFAM: iron permease FTR1; cytochrome c class I; KEGG: rme:Rmet_5945 iron permease FTR1 YP_002973819.1 KEGG: grail3.3073000201; .; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_002973820.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase YP_002973821.1 KEGG: shn:Shewana3_4320 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_002973822.1 KEGG: rso:RS05404 putative signal peptide protein YP_002973823.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS05405 cation efflux system transmembrane protein YP_002973824.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS05406 putative cation efflux system transmembrane protein YP_002973825.1 PFAM: outer membrane efflux protein; KEGG: reh:H16_A2185 cobalt-zinc-cadmium resistance outer membrane porin YP_002973826.1 KEGG: reh:H16_A2184 hypothetical membrane protein YP_002973827.1 KEGG: mpo:Mpop_2538 transcriptional regulator, MerR family; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_002973828.1 KEGG: rme:Rmet_6119 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein YP_002973829.1 KEGG: azo:azo3114 hypothetical secreted protein YP_002973830.1 KEGG: bpt:Bpet4577 hypothetical protein YP_002973831.1 KEGG: bpt:Bpet4578 hypothetical protein YP_002973832.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: nha:Nham_4413 hypothetical protein YP_002973833.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_3498 nitrogen regulatory protein P-II YP_002973834.1 PFAM: Thioredoxin domain; KEGG: reh:H16_A3455 thiol:disulfide interchange protein YP_002973835.1 PFAM: cytochrome c class I; KEGG: pol:Bpro_3501 cytochrome c, class I YP_002973836.1 PFAM: Secreted repeat of unknown function; KEGG: bac:BamMC406_0743 hypothetical protein YP_002973838.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_6131 methyltransferase type 11 YP_002973839.1 PFAM: GtrA family protein; KEGG: rme:Rmet_6129 GtrA-like protein YP_002973842.1 KEGG: rme:Rmet_5976 hypothetical protein YP_002973843.1 PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 copper resistance protein B YP_002973845.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bac:BamMC406_3390 heavy metal translocating P-type ATPase YP_002973846.1 KEGG: bid:Bind_3435 hypothetical protein YP_002973847.1 PFAM: FMN-binding domain protein; KEGG: reu:Reut_A1179 FMN-binding YP_002973848.1 PFAM: ApbE family lipoprotein; KEGG: reu:Reut_A1180 ApbE-like lipoprotein YP_002973849.1 KEGG: rso:RSc0612 hypothetical protein YP_002973850.1 KEGG: rme:Rmet_6121 hypothetical protein YP_002973851.1 PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein YP_002978417.1 KEGG: xac:XAC2421 hypothetical protein YP_002978419.1 KEGG: bpy:Bphyt_7294 hypothetical protein YP_002978420.1 KEGG: bac:BamMC406_6355 hypothetical protein YP_002978421.1 KEGG: sgl:SG0619 hypothetical protein YP_002978422.1 KEGG: swi:Swit_5119 hypothetical protein YP_002978423.1 PFAM: initiator RepB protein; KEGG: ppd:Ppro_3857 initiator RepB protein YP_002978425.1 KEGG: bch:Bcen2424_0451 hypothetical protein YP_002978426.1 KEGG: kpe:KPK_1773 type IV conjugative transfer system coupling protein TraD YP_002978428.1 KEGG: bte:BTH_I2729 hypothetical protein YP_002978430.1 KEGG: ajs:Ajs_4207 hypothetical protein YP_002978431.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: aav:Aave_0680 ParB domain protein nuclease YP_002978432.1 PFAM: protein of unknown function DUF932; KEGG: ajs:Ajs_4210 hypothetical protein YP_002978435.1 KEGG: mpt:Mpe_A2348 hypothetical protein YP_002978436.1 KEGG: ngk:NGK_p0010 protein A YP_002978438.1 KEGG: bph:Bphy_7555 hypothetical protein YP_002978439.1 KEGG: afe:Lferr_1736 phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthase and related enzyme YP_002978442.1 PFAM: TraB family protein; KEGG: nha:Nham_4542 hypothetical protein YP_002978443.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_6299 conjugation TrbI-like protein YP_002978444.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pol:Bpro_5236 conjugal transfer protein TrbG/VirB9/CagX YP_002978445.1 KEGG: rfr:Rfer_4254 type IV secretory pathway component VirB8-like YP_002978446.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pol:Bpro_5231 TrbL/VirB6 plasmid conjugal transfer protein YP_002978448.1 KEGG: tbd:Tbd_1819 hypothetical protein YP_002978449.1 KEGG: rme:Rmet_6305 type IV secretory pathway VirB4 components-like protein YP_002978450.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: rfr:Rfer_4261 hypothetical protein YP_002978452.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E YP_002978453.1 PFAM: Lytic transglycosylase catalytic; KEGG: bvi:Bcep1808_1339 lytic transglycosylase, catalytic YP_002978455.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rso:RSc0422 single-strand DNA-binding protein YP_002978458.1 PFAM: SCP-like extracellular; KEGG: bac:BamMC406_6555 SCP-like extracellular YP_002978460.1 KEGG: cti:pRALTA_0198 hypothetical protein YP_002978461.1 KEGG: reh:PHG343 putative adhesin precursor YP_002978462.1 KEGG: reh:PHG344 hypothetical protein YP_002978463.1 KEGG: cti:pRALTA_0202 putative prepilin type IV pili (PilS homolog) YP_002978464.1 PFAM: type II secretion system protein; KEGG: reh:PHG347 putative component of type II secretion apparatus YP_002978465.1 PFAM: type II secretion system protein E; KEGG: cti:pRALTA_0205 putative type IV secretion apparatus, ATPase component (PilQ homolog) YP_002978466.1 KEGG: reh:PHG349 putative component of type II secretion apparatus YP_002978467.1 TIGRFAM: type IV pilus biogenesis protein PilP; KEGG: cti:pRALTA_0207 conserved hypothetical protein; putative exported protein YP_002978468.1 KEGG: cti:pRALTA_0209 type IV secretion pathway, outer membrane lipoprotein, putative precursor (PilN homolog) YP_002978469.1 KEGG: cti:pRALTA_0210 conserved hypothetical protein; putative pilus-related protein (BfpG homolog); putative membrane protein YP_002978470.1 PFAM: Lytic transglycosylase catalytic; KEGG: reh:PHG353 putative transglycosylase YP_002978471.1 KEGG: reh:PHG354 putative PilL-like protein YP_002978472.1 KEGG: bph:Bphy_7127 hypothetical protein YP_002978473.1 KEGG: psp:PSPPH_1393 repressor protein C2, putative YP_002978474.1 KEGG: reu:Reut_A2380 peptidase S24, S26A and S26B YP_002978477.1 KEGG: cti:RALTA_B1560 putative toxin of a toxin/antitoxin system, PemK-like YP_002978478.1 KEGG: cti:RALTA_B1559 putative antitoxin protein of the toxin/antitoxin system YP_002978479.1 PFAM: integrase family protein; KEGG: bcj:pBCA090 putative integrase YP_002979561.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: pol:Bpro_5501 ATPase associated with various cellular activities, AAA_5 YP_002979563.1 KEGG: pol:Bpro_5081 hypothetical protein YP_002979564.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: kpe:KPK_5229 single-stranded DNA-binding protein YP_002979566.1 KEGG: rso:RSc2805 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein YP_002979567.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002979568.1 KEGG: rme:Rmet_5461 hypothetical protein YP_002979569.1 KEGG: mms:mma_1737 hypothetical protein YP_002979570.1 SMART: helix-turn-helix domain protein; KEGG: hsm:HSM_0248 DNA-binding protein YP_002979571.1 PFAM: protein of unknown function DUF955; KEGG: par:Psyc_0986 neutral zinc metallopeptidase YP_002979574.1 KEGG: net:Neut_1485 SppA protein YP_002979577.1 KEGG: nha:Nham_4354 transposase IS3/IS911 YP_002979578.1 PFAM: Integrase catalytic region; KEGG: gvi:gll2675 putative transposase YP_002979579.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rme:Rmet_3364 IstB-like ATP-binding protein YP_002979580.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_3365 integrase, catalytic region YP_002979581.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein YP_002979582.1 KEGG: pol:Bpro_3832 lipid-transfer protein YP_002979583.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_3816 AMP-dependent synthetase and ligase YP_002979584.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppw:PputW619_3351 AraC family transcriptional regulator YP_002979585.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bpy:Bphyt_1443 biopolymer transport protein ExbD/TolR YP_002979586.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bxe:Bxe_A2998 biopolymer transport protein ExbD/TolR YP_002979587.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: bxe:Bxe_A2999 biopolymer transport transmembrane protein, ExbB/TolQ YP_002979588.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bxe:Bxe_A3000 TonB protein YP_002979589.1 KEGG: bpl:BURPS1106A_0312 hypothetical protein YP_002979590.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bcm:Bcenmc03_1726 TonB-dependent receptor YP_002979591.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_2074 amine oxidase YP_002979593.1 PFAM: Chloride channel core; KEGG: rso:RS01992 putative voltage-gated ClC-type chloride channel ClcB YP_002979594.1 KEGG: bbr:BB3138 hypothetical protein YP_002979595.1 PFAM: Aldehyde Dehydrogenase; KEGG: bbr:BB0040 putative aldehyde dehydrogenase YP_002979596.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: atc:AGR_pTi_129 dehydrogenase YP_002979597.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: rme:Rmet_0776 major facilitator superfamily MFS_1 YP_002979599.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_3436 transcriptional regulator, LysR family YP_002979600.1 KEGG: cbc:CbuK_1445 hypothetical protein YP_002979601.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hau:Haur_1319 amine oxidase YP_002979602.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002979603.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: rso:RSp0347 flagellar basal-body rod protein FlgG YP_002979604.1 the hook connects flagellar basal body to the flagellar filament YP_002979605.1 PFAM: flagellin domain protein; KEGG: rso:RSp0382 flagellin protein YP_002979606.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hau:Haur_1319 amine oxidase YP_002979607.1 KEGG: bac:BamMC406_6773 hemolysin-type calcium binding domain-containing protein YP_002979608.1 PFAM: protein of unknown function DUF159; KEGG: bvi:Bcep1808_1205 hypothetical protein YP_002979609.1 KEGG: bpt:Bpet1136 hypothetical protein YP_002979610.1 KEGG: abc:ACICU_00694 hypothetical protein YP_002979611.1 PFAM: Integrase catalytic region; KEGG: abc:ACICU_00693 transposase YP_002979612.1 SMART: AAA ATPase; KEGG: mms:mma_0806 hypothetical protein YP_002979613.1 KEGG: abc:ACICU_00691 hypothetical protein YP_002979614.1 KEGG: shw:Sputw3181_3990 hypothetical protein YP_002979615.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mms:mma_3463 hypothetical protein YP_002979617.1 KEGG: eba:ebA5936 hypothetical protein YP_002979619.1 KEGG: rpd:RPD_2231 hypothetical protein YP_002979620.1 KEGG: pol:Bpro_2508 hypothetical protein YP_002979621.1 KEGG: bph:Bphy_3305 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_002979622.1 KEGG: dvl:Dvul_2612 hypothetical protein YP_002979623.1 PFAM: von Willebrand factor type A; KEGG: pol:Bpro_5495 von Willebrand factor, type A YP_002979624.1 PFAM: P4 alpha zinc-binding domain protein; SMART: P4 alpha zinc-binding domain protein; KEGG: dar:Daro_2291 hypothetical protein YP_002979625.1 KEGG: pmr:PMI2437 plasmid-related protein YP_002979627.1 PFAM: flagellar transcriptional activator FlhC; KEGG: ent:Ent638_2469 transcriptional activator FlhC YP_002979629.1 PFAM: Relaxase; KEGG: pol:Bpro_5472 hypothetical protein YP_002979630.1 KEGG: pol:Bpro_5224 hypothetical protein YP_002979631.1 KEGG: bac:BamMC406_6800 hypothetical protein YP_002979632.1 KEGG: pol:Bpro_5469 hypothetical protein YP_002979633.1 PFAM: type II secretion system protein E; KEGG: pol:Bpro_5226 type II secretion system protein E YP_002979634.1 PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_5223 conjugal transfer protein TrbC YP_002979635.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: rfr:Rfer_4261 hypothetical protein YP_002979636.1 KEGG: rfr:Rfer_4260 type IV secretory pathway VirB4 components-like YP_002979637.1 KEGG: pol:Bpro_5230 hypothetical protein YP_002979638.1 KEGG: pol:Bpro_5464 hypothetical protein YP_002979639.1 KEGG: pol:Bpro_5231 TrbL/VirB6 plasmid conjugal transfer protein YP_002979642.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_5232 AAA ATPase, central region YP_002979643.1 KEGG: pol:Bpro_5235 type IV secretory pathway component VirB8-like YP_002979644.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pol:Bpro_5236 conjugal transfer protein TrbG/VirB9/CagX YP_002979645.1 PFAM: conjugation TrbI family protein; KEGG: pol:Bpro_5237 conjugation TrbI-like protein YP_002979646.1 KEGG: pol:Bpro_5238 hypothetical protein YP_002979647.1 KEGG: rme:Rmet_6295 hypothetical protein YP_002979648.1 KEGG: bpy:Bphyt_7243 hypothetical protein YP_002979649.1 KEGG: rme:Rmet_6293 hypothetical protein YP_002979650.1 KEGG: rme:Rmet_6292 hypothetical protein YP_002979651.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6291 type II secretion system protein E YP_002979652.1 KEGG: bpy:Bphyt_7247 type II secretory pathway component PulF-like protein YP_002979653.1 KEGG: rme:Rmet_6289 hypothetical protein YP_002979654.1 KEGG: bpy:Bphyt_7249 hypothetical protein YP_002979655.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2896 hypothetical protein YP_002979657.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer YP_002979658.1 KEGG: pol:Bpro_4960 hypothetical protein YP_002979659.1 KEGG: dar:Daro_2218 hypothetical protein YP_002979661.1 KEGG: dps:DP1991 hypothetical protein YP_002979663.1 KEGG: rfr:Rfer_4473 hypothetical protein YP_002979666.1 KEGG: amr:AM1_C0038 hypothetical protein YP_002979668.1 KEGG: vei:Veis_5042 hypothetical protein YP_002979669.1 KEGG: mfa:Mfla_0465 hypothetical protein YP_002979681.1 KEGG: bvi:Bcep1808_7442 hypothetical protein YP_002979687.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ajs:Ajs_4217 exonuclease, RNase T and DNA polymerase III YP_002979689.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpt:Bpet2255 hypothetical protein YP_002979690.1 SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet2254 transcriptional regulator YP_002979693.1 PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_B0288 hypothetical protein YP_002979694.1 KEGG: vei:Veis_5042 hypothetical protein YP_002979702.1 KEGG: rme:Rmet_6025 hypothetical protein YP_002979707.1 KEGG: asa:ASA_P4G153 hypothetical protein YP_002979708.1 KEGG: bvi:Bcep1808_7513 hypothetical protein YP_002979710.1 KEGG: bac:BamMC406_6738 hypothetical protein YP_002979719.1 KEGG: mgi:Mflv_5483 hypothetical protein YP_002979723.1 KEGG: rme:Rmet_6046 hypothetical protein YP_002979727.1 KEGG: maq:Maqu_4222 hypothetical protein YP_002979728.1 KEGG: pol:Bpro_5378 hypothetical protein YP_002979730.1 KEGG: bvi:Bcep1808_6855 hypothetical protein YP_002979731.1 KEGG: bac:BamMC406_6705 hypothetical protein YP_002979732.1 KEGG: eta:ETA_pET350160 hypothetical protein YP_002979735.1 KEGG: bpy:Bphyt_6520 hypothetical protein YP_002979737.1 KEGG: sty:HCM1.197c hypothetical protein YP_002979740.1 KEGG: hypothetical protein LOC100021983 YP_002979741.1 KEGG: GG12928 gene product from transcript GG12928-RA YP_002979742.1 KEGG: rle:pRL120089 hypothetical protein YP_002979743.1 KEGG: alpha/beta hydrolase fold-1 domain-containing protein YP_002979745.1 KEGG: bvi:Bcep1808_7333 hypothetical protein YP_002979746.1 KEGG: asa:ASA_P4G035 hypothetical protein YP_002979749.1 KEGG: bvi:Bcep1808_7312 hypothetical protein YP_002979757.1 KEGG: rfr:Rfer_4442 hypothetical protein YP_002979758.1 KEGG: cti:RALTA_B2256 hypothetical protein YP_002979759.1 KEGG: psp:PSPPH_0985 hypothetical protein YP_002979762.1 KEGG: bvi:Bcep1808_6902 hypothetical protein YP_002979763.1 KEGG: spe:Spro_4935 hypothetical protein YP_002979764.1 KEGG: xcv:XCVd0061 hypothetical protein YP_002979765.1 KEGG: mpt:Mpe_B0098 hypothetical protein YP_002979774.1 KEGG:. YP_002979778.1 KEGG: bvi:Bcep1808_7008 hypothetical protein YP_002979779.1 KEGG: rme:Rmet_6164 hypothetical protein YP_002979780.1 KEGG: bpy:Bphyt_7284 hypothetical protein YP_002979781.1 KEGG: bvi:Bcep1808_7401 hypothetical protein YP_002979783.1 KEGG: pol:Bpro_5371 hypothetical protein YP_002979785.1 KEGG: bvi:Bcep1808_7344 hypothetical protein YP_002979786.1 KEGG: bpy:Bphyt_7330 hypothetical protein YP_002979789.1 PFAM: protein of unknown function DUF159; KEGG: bpy:Bphyt_0216 putative uncharacterized conserved protein YP_002979791.1 KEGG: rpc:RPC_3657 periplasmic protein-like YP_002979792.1 KEGG: kpe:KPK_4141 putative phage head morphogenesis protein YP_002979794.1 KEGG: syx:SynWH7803_1906 predicted membrane-associated Zn-dependent protease YP_002979802.1 KEGG: bch:Bcen2424_6887 hypothetical protein YP_002979805.1 KEGG: sbn:Sbal195_3747 nodulation protein L YP_002979806.1 KEGG: amr:AM1_0115 hypothetical protein YP_002979807.1 KEGG: bvi:Bcep1808_7648 hypothetical protein YP_002979808.1 KEGG: mes:Meso_3813 hypothetical protein YP_002979809.1 KEGG: swi:Swit_4944 hypothetical protein YP_002979810.1 KEGG: rme:Rmet_6043 hypothetical protein YP_002979812.1 KEGG: dsh:Dshi_1909 hypothetical protein YP_002979813.1 KEGG: bvi:Bcep1808_7249 hypothetical protein YP_002979814.1 KEGG: eba:p1B216 hypothetical protein YP_002979816.1 KEGG: amr:AM1_A0326 hypothetical protein YP_002979820.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002979822.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS02604 putative HNS-like transcription regulator protein YP_002979825.1 KEGG: bpm:BURPS1710b_A1045 hypothetical protein YP_002979830.1 PFAM: protein of unknown function DUF1294; KEGG: maq:Maqu_2966 hypothetical protein YP_002979836.1 KEGG: amr:AM1_F0154 hypothetical protein YP_002979841.1 KEGG: mpt:Mpe_B0331 hypothetical protein YP_002979842.1 KEGG: bpy:Bphyt_7324 integrase family protein YP_002979843.1 KEGG: reh:PHG054 hypothetical protein YP_002979844.1 KEGG: bph:Bphy_7605 hypothetical protein YP_002979845.1 KEGG: reh:PHG052 hypothetical protein YP_002979846.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bmj:BMULJ_03712 phthalate dioxygenase oxygenase YP_002979847.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bmj:BMULJ_03711 cis-phthalate dihydrodiol dehydrogenase YP_002979848.1 KEGG: bmu:Bmul_4808 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_002979849.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_03708 MarR family transcriptional regulator YP_002979850.1 PFAM: porin Gram-negative type; KEGG: bmj:BMULJ_03732 outer membrane porin YP_002979851.1 KEGG: bmj:BMULJ_03707 4,5-dihydroxyphthalate decarboxylase YP_002979852.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_4267 D-galactonate transporter YP_002979853.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: bmj:BMULJ_03705 FAD/NAD(P)-binding oxidoreductase YP_002979854.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_A3521 hypothetical protein YP_002979855.1 KEGG: bac:BamMC406_6697 hypothetical protein YP_002979856.1 KEGG: bsu:BSU20890 hypothetical protein YP_002979858.1 KEGG: bch:Bcen2424_0206 ATP-dependent OLD family endonuclease YP_002979859.1 KEGG: gbe:GbCGDNIH1_1179 DNA helicase II YP_002979860.1 KEGG: mpt:Mpe_B0331 hypothetical protein YP_002979861.1 KEGG: mpt:Mpe_B0341 hypothetical protein YP_002979864.1 KEGG: mpt:Mpe_B0225 hypothetical protein YP_002979865.1 KEGG: ajs:Ajs_4203 hypothetical protein YP_002979866.1 KEGG: bvi:Bcep1808_6947 hypothetical protein YP_002979867.1 KEGG: xcv:XCVd0146 hypothetical protein YP_002979868.1 KEGG: bac:BamMC406_6782 hypothetical protein YP_002979869.1 KEGG: dar:Daro_2290 ATP-binding region, ATPase-like YP_002979870.1 KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme YP_002979872.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cti:pRALTA_0172 putative DNA methyltransferase, modification methylase YP_002979873.1 KEGG: bpy:Bphyt_5894 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; MHYT domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002979875.1 KEGG: reh:PHG321 putative helicase superfamily I YP_002979876.1 PFAM: Gp37Gp68 family protein; KEGG: oca:OCAR_5537 phage Gp37Gp68 YP_002979878.1 KEGG: bpy:Bphyt_7275 hypothetical protein YP_002979879.1 PFAM: protein of unknown function DUF1643; KEGG: npu:Npun_R6263 hypothetical protein YP_002979881.1 KEGG: swd:Swoo_1011 methyl-accepting chemotaxis sensory transducer YP_002979882.1 KEGG: bvi:Bcep1808_6883 hypothetical protein YP_002979883.1 KEGG: eba:p1B250 hypothetical protein YP_002979884.1 KEGG: rme:Rmet_6080 hypothetical protein YP_002979887.1 KEGG: pmy:Pmen_1440 17 kDa surface antigen YP_002979889.1 KEGG: rfr:Rfer_4424 hypothetical protein YP_002979891.1 PFAM: conserved hypothetical protein; KEGG: bac:BamMC406_6789 hypothetical protein YP_002979892.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mpt:Mpe_B0336 hypothetical protein YP_002979893.1 KEGG: maq:Maqu_4315 hypothetical protein YP_002979899.1 KEGG: reh:PHG313 hypothetical protein YP_002979900.1 PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: reh:PHG314 putative helicase superfamily II YP_002979901.1 KEGG: cti:pRALTA_0159 hypothetical protein YP_002979902.1 KEGG: cti:pRALTA_0159 hypothetical protein YP_002979907.1 PFAM: peptidase A24A prepilin type IV; KEGG: pau:PA14_58770 type 4 prepilin peptidase PilD YP_002979908.1 KEGG: reh:PHG312 putative partitioning protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002979909.1 KEGG: ajs:Ajs_1592 hypothetical protein YP_002979910.1 KEGG: reh:PHG310 hypothetical protein YP_002979912.1 KEGG: eba:p1B75 hypothetical protein YP_002979913.1 KEGG: eba:p1B74 hypothetical protein YP_002979914.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bac:BamMC406_6523 UBA/ThiF-type NAD/FAD binding protein YP_002979916.1 KEGG: dac:Daci_1708 hypothetical protein YP_002979917.1 KEGG: vei:Veis_4124 hypothetical protein YP_002979918.1 PFAM: protein of unknown function DUF1173; KEGG: pol:Bpro_5361 hypothetical protein YP_002979920.1 KEGG: rme:Rmet_6003 hypothetical protein YP_002979923.1 KEGG: pol:Bpro_5355 hypothetical protein YP_002979925.1 KEGG: asa:ASA_P4G124 NgrC YP_002979927.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: sse:Ssed_0600 histone family protein DNA-binding protein YP_002979928.1 KEGG: pfl:PFL_4660 hypothetical protein YP_002979929.1 KEGG: bvi:Bcep1808_5494 phage integrase family protein YP_002979930.1 KEGG: xau:Xaut_3691 XRE family transcriptional regulator YP_002979931.1 KEGG: reh:PHG105 putative KfrA protein YP_002979932.1 KEGG: gvi:gll4023 unknown protein YP_002979933.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: smd:Smed_6450 transcriptional regulator, CopG family YP_002979934.1 PFAM: plasmid stabilization system; KEGG: sfl:CP0218 hypothetical protein YP_002979935.1 KEGG: kpn:KPN_pKPN3p05907 hypothetical protein YP_002979936.1 PFAM: integrase family protein; KEGG: bmu:Bmul_5789 integrase family protein YP_002979937.1 KEGG: bvi:Bcep1808_7205 TnpC YP_002979938.1 PFAM: transposase Tn3 family protein; KEGG: bvi:Bcep1808_7171 transposase Tn3 family protein YP_002979939.1 KEGG: pna:Pnap_4981 mucin-associated surface protein YP_002979940.1 PFAM: protein of unknown function DUF746; KEGG: rso:RSc0889 hypothetical protein YP_002979942.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RS04811 signal peptide protein YP_002979943.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: rso:RSc3182 activation/secretion signal peptide protein YP_002979944.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: rso:RS04813 hemagglutinin-like signal peptide protein YP_002979946.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; protein of unknown function DUF637 hemagglutinin putative; KEGG: rso:RSc3188 putative hemagglutinin-related protein YP_002979947.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; KEGG: bpy:Bphyt_4754 integral membrane sensor hybrid histidine kinase YP_002979950.1 KEGG: xfa:XF1918 hypothetical protein YP_002979952.1 KEGG: cti:pRALTA_0666 hypothetical protein YP_002979953.1 KEGG: reu:Reut_C6073 hypothetical protein YP_002979954.1 KEGG: mxa:MXAN_7420 response regulator YP_002979955.1 KEGG: asa:ASA_P4G069 hypothetical protein YP_002979956.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: cti:pRALTA_0149 putative histone-like DNA-binding protein YP_002979959.1 PFAM: PAAR repeat-containing protein; KEGG: cti:RALTA_A2676 hypothetical protein YP_002979960.1 KEGG: cti:RALTA_A2675 hypothetical protein YP_002979961.1 KEGG: cti:RALTA_A2674 hypothetical protein YP_002979962.1 KEGG: cti:RALTA_A2673 hypothetical protein YP_002979963.1 KEGG: bte:BTH_II2326 hypothetical protein YP_002979964.1 PFAM: integrase family protein; KEGG: bvi:Bcep1808_7050 phage integrase family protein YP_002979965.1 PFAM: plasmid encoded RepA protein; KEGG: rso:RSp0001 RepA replicase protein YP_002979967.1 KEGG: rme:Rmet_6245 hypothetical protein YP_002979969.1 TIGRFAM: parB-like partition protein; KEGG: bvi:Bcep1808_7053 ParB-like partition protein YP_002979970.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bvi:Bcep1808_7052 cobyrinic acid a,c-diamide synthase YP_002979972.1 PFAM: initiator RepB protein; KEGG: bac:BamMC406_5756 hypothetical protein YP_002979974.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: vei:Veis_3688 protein of unknown function DUF882 YP_002979975.1 KEGG: pol:Bpro_5046 hypothetical protein YP_002979978.1 KEGG: pol:Bpro_5360 hypothetical protein YP_002979979.1 KEGG: bxe:Bxe_A1062 ribonuclease E YP_002979980.1 KEGG: rfr:Rfer_4315 hypothetical protein YP_002979981.1 PFAM: TraB family protein; KEGG: pol:Bpro_5052 hypothetical protein YP_002979984.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_5077 UvrD/REP helicase YP_002979985.1 KEGG: ajs:Ajs_1561 hypothetical protein YP_002979986.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002979987.1 binds the polymerase to DNA and acts as a sliding clamp YP_002979988.1 negatively supercoils closed circular double-stranded DNA YP_002979989.1 KEGG: hip:CGSHiEE_08925 hypothetical protein YP_002979990.1 KEGG: ecp:ECP_1910 hypothetical protein YP_002979991.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002979993.1 KEGG: rso:RSc3434 hypothetical protein YP_002979994.1 PFAM: fimbrial protein; KEGG: pae:PA5284 hypothetical protein YP_002979995.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RSc2102 transcription regulator protein YP_002979996.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc2103 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002979997.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2104 amino-acid transmembrane ABC transporter protein YP_002979998.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2105 amino-acid transmembrane ABC transporter protein YP_002979999.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2106 amino-acid ATP-binding ABC transporter protein YP_002980000.1 PFAM: protein of unknown function UPF0187; KEGG: rso:RSc3414 hypothetical protein YP_002980001.1 KEGG: reu:Reut_B4310 hypothetical protein YP_002980002.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: reh:H16_B1147 cNMP regulatory protein YP_002980003.1 activates fatty acids by binding to coenzyme A YP_002980004.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rso:RSc0127 hemagglutinin-related protein YP_002980005.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_II0494 acetyltransferase YP_002980006.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein YP_002980007.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 ECF subfamily RNA polymerase sigma factor YP_002980008.1 KEGG: bvi:Bcep1808_3441 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver YP_002980009.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0129 hypothetical protein YP_002980010.1 PFAM: HPP family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rso:RSc0130 hypothetical protein YP_002980011.1 KEGG: rso:RSc0131 lipoprotein; TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_002980012.1 PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0132 transcription regulator protein YP_002980013.1 PFAM: GYD family protein; KEGG: rso:RSc0133 hypothetical protein YP_002980014.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002980015.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002980016.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002980017.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002980018.1 PFAM: protein of unknown function DUF344; KEGG: rso:RSc0138 hypothetical protein YP_002980019.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002980020.1 KEGG: rso:RSc0140 exodeoxyribonuclease III protein; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase YP_002980021.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_002980022.1 PFAM: band 7 protein; KEGG: rso:RSc0145 transmembrane protein YP_002980023.1 PFAM: protein of unknown function DUF218; KEGG: rso:RSc0146 lipoprotein transmembrane YP_002980024.1 KEGG: rso:RSc0148 hypothetical protein YP_002980025.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc0149 transcription regulator protein YP_002980026.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0151 transmembrane protein YP_002980027.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0153 signal peptide protein YP_002980028.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0154 muropeptide transporter YP_002980029.1 PFAM: protein of unknown function DUF185; KEGG: rso:RSc0155 hypothetical protein YP_002980030.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0156 short chain dehydrogenase YP_002980031.1 PFAM: dihydroneopterin aldolase; KEGG: rso:RSc0157 hypothetical protein YP_002980032.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: rso:RSc0158 arginase YP_002980033.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: rso:RSc0159 acetylornithine aminotransferase protein YP_002980034.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0160 transcription regulator protein YP_002980035.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0162 transcription regulator protein YP_002980036.1 PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0163 lipoprotein YP_002980037.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0164 ABC transporter ATP-binding protein YP_002980038.1 PFAM: ABC transporter; KEGG: rso:RSc0165 hypothetical protein YP_002980039.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0166 outer membrane channel lipoprotein YP_002980040.1 PFAM: PAAR repeat-containing protein; KEGG: bam:Bamb_0211 PaaR repeat-containing protein YP_002980041.1 KEGG: reh:H16_B0856 hypothetical protein YP_002980042.1 KEGG: reh:H16_B0855 hypothetical protein YP_002980043.1 KEGG: reh:H16_B0854 hypothetical protein YP_002980044.1 KEGG: reh:H16_B0855 hypothetical protein YP_002980045.1 KEGG: reh:H16_B0854 hypothetical protein YP_002980046.1 KEGG: reh:H16_B0855 hypothetical protein YP_002980047.1 KEGG: reh:H16_A0029 hypothetical membrane anchored protein YP_002980048.1 KEGG: reh:H16_A0028 hypothetical protein YP_002980049.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: reh:H16_A0626 VgrG protein, uncharacterized protein conserved in bacteria YP_002980050.1 KEGG: rso:RSc0166 outer membrane channel lipoprotein YP_002980051.1 KEGG: rso:RSc0174 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_002980052.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_002980053.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rso:RSc0177 UDP-N-acetylglucosamine pyrophosphorylase protein YP_002980054.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002980056.1 PFAM: Patatin; KEGG: rso:RSc0221 hypothetical protein YP_002980057.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bte:BTH_II1160 alcohol dehydrogenase, zinc-containing YP_002980058.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bte:BTH_II1158 LysR family transcriptional regulator YP_002980059.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: bcm:Bcenmc03_6147 thiamine pyrophosphate binding domain-containing protein YP_002980060.1 PFAM: hemerythrin HHE cation-binding protein; KEGG: azo:azo0331 hypothetical protein YP_002980061.1 PFAM: PRC-barrel domain protein; KEGG: bac:BamMC406_6353 PRC-barrel domain-containing protein YP_002980062.1 KEGG: bxe:Bxe_B1328 hypothetical protein YP_002980063.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01667 hypothetical protein YP_002980064.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0229 amino transferase protein YP_002980065.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_0841 transcriptional regulator, AraC family YP_002980066.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein YP_002980067.1 KEGG: mes:Meso_0629 hypothetical protein YP_002980068.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_6200 major facilitator superfamily MFS_1 YP_002980069.1 PFAM: Glutathione S-transferase domain; KEGG: bbr:BB2888 glutathione transferase YP_002980070.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0231 (homoserine/homoserine lactone) efflux transmembrane protein YP_002980071.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002980072.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0233 integral membrane transmembrane protein YP_002980073.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0234 transcription regulator protein YP_002980074.1 PFAM: protein of unknown function DUF427; KEGG: rso:RSc0235 hypothetical protein YP_002980075.1 PFAM: Rh family protein/ammonium transporter; KEGG: rme:Rmet_4750 Rh-like protein/ammonium transporter YP_002980076.1 KEGG: rso:RSc0236 hypothetical protein YP_002980077.1 KEGG: rso:RSc0237 methylmalonyl-CoA mutase protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein YP_002980078.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_002980079.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rso:RSc0253 hypothetical protein YP_002980080.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpl:BURPS1106A_3175 acetyltransferase YP_002980081.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bph:Bphy_4180 XRE family transcriptional regulator YP_002980082.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_B0171 LysR family transcriptional regulator YP_002980083.1 KEGG: bur:Bcep18194_B0172 hypothetical protein YP_002980084.1 PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: rso:RSc0254 hypothetical protein YP_002980085.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RSc0255 hypothetical protein YP_002980086.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bxe:Bxe_B1164 peptidase C56, PfpI YP_002980087.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0256 haloacetate dehalogenase H-1 protein YP_002980088.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase alpha subunit; KEGG: bpm:BURPS1710b_A0200 hydroxylase YP_002980089.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bxe:Bxe_B0793 hypothetical protein YP_002980090.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor YP_002980091.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002980092.1 PFAM: protein of unknown function DUF1446; KEGG: cti:RALTA_B0801 conserved hypothetical protein; DUF1446 YP_002980093.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal YP_002980094.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3507 short-chain dehydrogenase/reductase SDR YP_002980095.1 PFAM: carboxyl transferase; KEGG: bps:BPSS2031 acetyl-CoA carboxylase carboxyltransferase YP_002980096.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1896 acyl-CoA dehydrogenase domain protein YP_002980097.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L YP_002980098.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase YP_002980099.1 PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2924 TetR family transcriptional regulator YP_002980100.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc0258 beta lactamase protein YP_002980101.1 PFAM: protein of unknown function DUF1289; KEGG: rso:RSc0259 hypothetical protein YP_002980102.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc0260 hypothetical protein YP_002980103.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_002980104.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc0262 2-hydroxyacid dehydrogenase oxidoreductase protein YP_002980105.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: rso:RSc0265 acyl-CoA carboxylase subunit alpha YP_002980106.1 KEGG:. YP_002980107.1 KEGG: rso:RSc0266 biotin synthase protein; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002980108.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002980109.1 KEGG: rso:RSc0268 signal peptide protein YP_002980110.1 PFAM: carboxyl transferase; KEGG: rso:RSc0269 propionyl-CoA carboxylase (beta subunit) protein YP_002980111.1 KEGG: rso:RSc0270 hypothetical protein YP_002980112.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc0271 hypothetical protein YP_002980113.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0273 2-hydroxychromene-2-carboxylate isomerase protein YP_002980114.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0274 acyl CoA dehydrogenase oxidoreductase protein YP_002980115.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc0275 short chain dehydrogenase YP_002980116.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002980117.1 PFAM: carbonic anhydrase; KEGG: rso:RSc0277 carbonic anhydrase protein YP_002980118.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_002980119.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cti:RALTA_A0110 acyl-CoA dehydrogenase oxidoreductase YP_002980120.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rso:RSc0280 transcription regulator protein YP_002980121.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc0281 hypothetical protein YP_002980122.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: rso:RSc0282 hypothetical protein YP_002980123.1 KEGG: rso:RSc0283 hypothetical protein YP_002980124.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0284 short chain dehydrogenase YP_002980125.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0285 thiol:disulfide interchange signal peptide protein YP_002980126.1 PFAM: sporulation protein; KEGG: rso:RSc0286 hypothetical protein YP_002980127.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002980128.1 PFAM: Domain of unknown function DUF1840; KEGG: rso:RSc0288 hypothetical protein YP_002980129.1 PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: cti:RALTA_A1787 bacterioferritin YP_002980130.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: reu:Reut_A0125 hypothetical protein YP_002980131.1 PFAM: protein of unknown function DUF1328; KEGG: cak:Caul_4145 hypothetical protein YP_002980132.1 PFAM: CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc0289 transmembrane sensor kinase VsrA transcription regulator protein YP_002980133.1 PFAM: entericidin EcnAB; KEGG: rso:RSc0290 entericidin precursor lipoprotein YP_002980134.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc0291 transcription regulator protein YP_002980135.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rso:RSc0292 response regulator transcription regulator protein YP_002980136.1 KEGG: rso:RSc0293 signal peptide protein YP_002980137.1 KEGG: rso:RSc0294 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region YP_002980138.1 PFAM: homocysteine S-methyltransferase; KEGG: rso:RSc0295 5-methyltetrahydrofolate--homocysteine methyltransferase YP_002980139.1 PFAM: rhodanese; SMART: rhodanese; KEGG: rso:RSc0296 hypothetical protein YP_002980140.1 KEGG: rso:RSc0297 hypothetical protein YP_002980141.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0298 B-ketoadipate enol-lactone hydrolase protein YP_002980142.1 KEGG: rso:RSc0299 prolin-rich signal peptide protein YP_002980143.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rso:RSc0300 transcription regulator protein YP_002980144.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0301 hypothetical protein YP_002980145.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rso:RSc0302 transcription regulator protein YP_002980146.1 PFAM: Luciferase-like monooxygenase; KEGG: sso:SSO1532 hypothetical protein YP_002980147.1 PFAM: extracellular ligand-binding receptor; KEGG: bxe:Bxe_A4234 branched chain amino acid ABC transporter periplasmic ligand-binding protein YP_002980148.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002980149.1 KEGG: rso:RSc0305 hypothetical protein YP_002980150.1 PFAM: Patatin; KEGG: rso:RSc0306 hypothetical protein YP_002980151.1 PFAM: glutathione peroxidase; KEGG: rso:RSc0307 glutathione peroxidase transmembrane protein YP_002980152.1 KEGG: rso:RSc0308 hypothetical protein YP_002980153.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: rso:RSc0309 transferase protein YP_002980154.1 PFAM: sporulation protein; KEGG: rso:RSc0310 signal peptide protein YP_002980155.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002980156.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002980157.1 PFAM: protein of unknown function DUF140; KEGG: rso:RSc0313 hypothetical protein YP_002980158.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0314 ABC transporter ATP-binding protein YP_002980159.1 PFAM: mammalian cell entry related domain protein; KEGG: rso:RSc0315 signal peptide protein YP_002980160.1 PFAM: protein of unknown function DUF330; KEGG: rso:RSc0316 lipoprotein YP_002980161.1 PFAM: VanZ family protein; KEGG: rso:RSc0317 hypothetical protein YP_002980162.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B3681 major facilitator transporter YP_002980163.1 PFAM: IucA/IucC family protein; KEGG: bbt:BBta_0635 siderophore biosynthesis protein YP_002980164.1 KEGG: rso:RSc0319 non-hemolytic phospholipase C signal peptide protein; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_002980165.1 KEGG: rso:RSc0320 hypothetical protein YP_002980166.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002980167.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_002980168.1 KEGG: rso:RSc0324 hypothetical protein YP_002980169.1 glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_002980170.1 PFAM: protein of unknown function DUF493; KEGG: rso:RSc0326 hypothetical protein YP_002980171.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; Penicillin-binding protein 5 domain protein; KEGG: rso:RSc0327 penicillin-binding transmembrane protein YP_002980172.1 KEGG: rso:RSc0328 hypothetical protein YP_002980173.1 KEGG: rso:RSc0329 ferredoxin 2Fe-2S protein YP_002980174.1 involved in the transport of C4-dicarboxylates across the membrane YP_002980175.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc0331 C4-dicarboxylate transport sensor kinase transcription regulator protein YP_002980176.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: rso:RSc0332 C4-dicarboxylate transport response regulator transcription regulator protein YP_002980177.1 KEGG: bph:Bphy_5207 hypothetical protein YP_002980178.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rso:RSc0333 transmembrane protein YP_002980179.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: rso:RSc0334 hypothetical protein YP_002980180.1 KEGG: rso:RSc0335 transmembrane protein YP_002980181.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_A0287 lysine exporter protein LysE/YggA YP_002980182.1 PFAM: TnsA endonuclease; KEGG: afe:Lferr_2137 TnsA endonuclease YP_002980183.1 PFAM: integrase catalytic region; KEGG: pst:PSPTO_0058 transposase YP_002980184.1 PFAM: TniB family protein; KEGG: msu:MS2015 hypothetical protein YP_002980185.1 KEGG: afe:Lferr_2128 hypothetical protein YP_002980186.1 KEGG: afe:Lferr_2127 hypothetical protein YP_002980187.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: dvu:DVU1746 C-5 cytosine-specific DNA methylase family protein YP_002980188.1 PFAM: UvrD/REP helicase; KEGG: paa:Paes_2313 UvrD/REP helicase YP_002980189.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: gdj:Gdia_2656 DNA mismatch endonuclease Vsr YP_002980190.1 KEGG: dac:Daci_4706 hypothetical protein YP_002980191.1 KEGG: bxe:Bxe_A1802 hypothetical protein YP_002980192.1 KEGG: btk:BT9727_0843 ATPase YP_002980193.1 KEGG: rme:Rmet_2844 hypothetical protein YP_002980194.1 KEGG: rso:RSc0339 hypothetical protein YP_002980195.1 PFAM: protein of unknown function DUF526; KEGG: rso:RSc0340 hypothetical protein YP_002980196.1 KEGG: rso:RSc0341 signal peptide protein YP_002980197.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RSc0342 nitrogen regulatory P-II transcription regulator protein YP_002980198.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: reu:Reut_A0292 ammonium transporter YP_002980199.1 TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: rso:RSc0344 hypothetical protein YP_002980200.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002980201.1 PFAM: PTS system fructose subfamily IIA component; KEGG: rso:RSc0346 hypothetical protein YP_002980202.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: rso:RSc0347 phosphohistidinoprotein-hexose phosphotransferase YP_002980203.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: rso:RSc0348 phosphoenolpyruvate-protein phosphotransferase transmembrane YP_002980204.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSc0349 bacterioferritin-associated ferredoxin protein YP_002980205.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: rso:RSc0350 bacterioferritin YP_002980206.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rso:RSc0351 molybdopterin biosynthesis protein MoeB YP_002980207.1 KEGG: rso:RSc0352 carboxy-terminal processing protease transmembrane protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_002980208.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002980209.1 PFAM: rhodanese; SMART: rhodanese; KEGG: rso:RSc0354 hypothetical protein YP_002980210.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rso:RSc0355 glutaredoxin 3 (GRX3) protein YP_002980211.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_002980212.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002980213.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc0358 tRNA/rRNA methyltransferase protein YP_002980214.1 KEGG: rso:RSc0359 competence protein F-related protein YP_002980215.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0360 biotin synthesis protein (methyltransferase) YP_002980216.1 KEGG: rso:RSc0361 hypothetical protein YP_002980217.1 TIGRFAM: cytochrome C oxidase, subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C class I; KEGG: rso:RSc0362 cytochrome C oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein YP_002980218.1 KEGG: rso:RSc0363 cytochrome C oxidase polypeptide I; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I YP_002980219.1 KEGG: rso:RSc0364 hypothetical protein YP_002980220.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_002980221.1 KEGG: rso:RSc0366 hypothetical protein YP_002980222.1 PFAM: cytochrome C oxidase subunit III; KEGG: rso:RSc0367 cytochrome C oxidase subunit III transmembrane protein YP_002980223.1 KEGG: rso:RSc0368 hypothetical protein YP_002980224.1 KEGG: rso:RSc0369 transmembrane cytochrome Oxidase complex biogenesis factor transmembrane protein YP_002980225.1 KEGG: rso:RSc0370 hypothetical protein YP_002980226.1 PFAM: cytochrome Oxidase assembly; KEGG: rso:RSc0371 heme O oxygenase (cytochrome aa3-controlling) transmembrane protein YP_002980227.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002980228.1 PFAM: electron transport protein SCO1/SenC; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rso:RSc0373 lipoprotein YP_002980229.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_002980230.1 KEGG: rso:RSc0375 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_002980231.1 PFAM: OsmC family protein; KEGG: rso:RSc0376 hypothetical protein YP_002980232.1 PFAM: pirin; KEGG: rso:RSc0377 pirin-like protein YP_002980233.1 PFAM: glycosyl transferase, family 3-like; KEGG: rso:RSc0378 hypothetical protein YP_002980234.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002980235.1 KEGG: rso:RSc0379 nitrate ATP-binding ABC transporter protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter; SMART: AAA ATPase YP_002980236.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0380 nitrate transmembrane ABC transporter protein YP_002980237.1 KEGG: rso:RSc0381 nitrate transporter protein YP_002980238.1 PFAM: ANTAR domain protein; KEGG: rso:RSc0382 response regulator transcription regulator protein YP_002980239.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0383 hypothetical protein YP_002980240.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0384 maleylacetoacetate isomerase (glutathione transferase zeta 1) protein YP_002980241.1 KEGG: sml:Smlt0450 hypothetical protein YP_002980243.1 KEGG: reh:H16_A0021 hypothetical protein YP_002980244.1 KEGG: reh:H16_A0022 hypothetical protein YP_002980245.1 KEGG: reh:H16_A0023 hypothetical protein YP_002980246.1 KEGG: reh:H16_B0505 hypothetical protein YP_002980247.1 KEGG: rso:RSc0386 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002980248.1 PFAM: peptidase M16 domain protein; KEGG: rso:RSc0387 zinc protease protein YP_002980249.1 PFAM: peptidase M16 domain protein; KEGG: rso:RSc0388 zinc protease-like signal peptide protein YP_002980250.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: rso:RSc0389 hypothetical protein YP_002980251.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002980252.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc0391 ferredoxin protein YP_002980253.1 KEGG: rso:RSc0392 prolin-rich transmembrane protein YP_002980254.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002980255.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002980256.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002980257.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002980258.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_002980259.1 SMART: Tetratricopeptide domain protein; KEGG: rso:RSc0398 hypothetical protein YP_002980260.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002980261.1 KEGG: rso:RSc0400 hypothetical protein YP_002980262.1 KEGG: rso:RSc0401 A/G-specific adenine glycosylase protein; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; NUDIX hydrolase; SMART: HhH-GPD family protein YP_002980263.1 PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: rso:RSc0402 hypothetical protein YP_002980264.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc0403 hypothetical protein YP_002980265.1 PFAM: PsiF repeat protein; KEGG: rso:RSc0404 signal peptide protein YP_002980266.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002980267.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rso:RSc0406 nitrogen regulatory IIA (enzyme IIA-Ntr) (phosphotransferase enzyme II, A component) transcription regulator protein YP_002980268.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rso:RSc0407 sigma-54 modulation protein YP_002980269.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002980270.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0409 ABC transporter ATP-binding protein YP_002980271.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: rso:RSc0410 signal peptide protein YP_002980272.1 PFAM: protein of unknown function DUF1239; KEGG: rso:RSc0411 hypothetical protein YP_002980273.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rso:RSc0412 hypothetical protein YP_002980274.1 KEGG: rso:RSc0413 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein YP_002980275.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: rso:RSc0414 glutathione-regulated potassium-efflux system K+/H+ antiporter transmembrane protein YP_002980276.1 KEGG: rso:RSc0415 hypothetical protein YP_002980277.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rso:RSc0416 hypothetical protein YP_002980278.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002980279.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0418 transport transmembrane protein YP_002980280.1 PFAM: protein of unknown function DUF355; KEGG: rso:RSc0419 hypothetical protein YP_002980281.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; KEGG: rso:RSc0420 excinuclease ABC subunit A YP_002980282.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0421 multidrug-efflux transporter transmembrane protein YP_002980283.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002980284.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0544 periplasmic sensor signal transduction histidine kinase YP_002980285.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pol:Bpro_0543 two component transcriptional regulator, winged helix family YP_002980286.1 KEGG: dac:Daci_3135 thiosulfate reductase cytochrome b subunit (membrane anchoring protein) YP_002980287.1 PFAM: oxidoreductase molybdopterin binding; KEGG: dac:Daci_3134 oxidoreductase molybdopterin binding YP_002980288.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: dac:Daci_3133 pentapeptide MXKDX repeat-containing protein YP_002980289.1 PFAM: cytochrome C biogenesis protein transmembrane region; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_0539 cytochrome C biogenesis protein, transmembrane region YP_002980290.1 KEGG: rso:RSc0424 signal peptide protein YP_002980291.1 KEGG: rso:RSc0425 hypothetical protein YP_002980292.1 KEGG: bur:Bcep18194_A6097 hypothetical protein YP_002980293.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002980294.1 PFAM: polysaccharide deacetylase; KEGG: bac:BamMC406_2684 polysaccharide deacetylase YP_002980295.1 PFAM: MMPL domain protein; KEGG: bch:Bcen2424_2764 exporter-like protein YP_002980296.1 KEGG: bac:BamMC406_2682 hypothetical protein YP_002980297.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: rso:RSc0431 hypothetical protein YP_002980298.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RSc0432 hypothetical protein YP_002980299.1 KEGG: rso:RSc0433 hypothetical protein YP_002980300.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_002980301.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc0436 hypothetical protein YP_002980302.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C6808 TetR family transcriptional regulator YP_002980303.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bam:Bamb_5148 Sel1 domain-containing protein YP_002980304.1 KEGG: bcj:BCAS0626 lipoprotein YP_002980305.1 PFAM: cytochrome C class I; KEGG: rme:Rmet_5347 cytochrome C, class I YP_002980306.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0437 hypothetical protein YP_002980307.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0438 hypothetical protein YP_002980308.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc0439 lipase/esterase protein YP_002980309.1 KEGG: rso:RSc0440 signal peptide protein YP_002980310.1 KEGG: rso:RSc0441 thermoresistant gluconokinase (gluconate kinase 2) protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_002980311.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc0442 acyl-CoA synthetase YP_002980312.1 KEGG: rso:RSc0443 glycin-rich signal peptide protein YP_002980313.1 KEGG: rso:RSc0444 signal peptide protein YP_002980314.1 PFAM: peptidase C39 bacteriocin processing; KEGG: rso:RSc0445 signal peptide protein YP_002980315.1 KEGG: rso:RSc0446 lipoprotein YP_002980316.1 KEGG: rso:RSc0447 hypothetical protein YP_002980317.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_002980318.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_002980319.1 PFAM: K channel inward rectifier conserved region 2 domain protein; Ion transport 2 domain protein; KEGG: rso:RSc0450 ATP-sensitive inward rectifier potassium channel related transmembrane protein YP_002980320.1 PFAM: nucleoside recognition domain protein; KEGG: rso:RSc0452 transmembrane protein YP_002980321.1 KEGG: rso:RSc0453 hypothetical protein YP_002980322.1 PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc0454 oxidoreductase protein YP_002980323.1 PFAM: histidine triad (HIT) protein; KEGG: rso:RSc0455 hypothetical protein YP_002980324.1 PFAM: ABC transporter; ABC transporter; SbmABacA family protein; SMART: AAA ATPase; KEGG: rso:RSc0456 ATP-binding transport ABC transporter protein YP_002980325.1 PFAM: protein of unknown function DUF971; KEGG: rso:RSc0457 hypothetical protein YP_002980326.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002980327.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: rso:RSc0459 hypothetical protein YP_002980328.1 PFAM: Sterol-binding domain protein; KEGG: rso:RSc0460 hypothetical protein YP_002980329.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_002980330.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 12; KEGG: rso:RSc0462 hypothetical protein YP_002980331.1 PFAM: Na+/solute symporter; KEGG: rso:RSc0463 sodium/solute symporter transmembrane protein YP_002980332.1 TIGRFAM: regulatory protein, FmdB family; KEGG: rso:RSc0464 hypothetical protein YP_002980333.1 PFAM: protein of unknown function DUF502; KEGG: rso:RSc0465 hypothetical protein YP_002980334.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002980335.1 KEGG: rso:RSc0467 hypothetical protein YP_002980336.1 converts dATP to dAMP and pyrophosphate YP_002980337.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rso:RSc0469 hypothetical protein YP_002980338.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: rso:RSc0470 hypothetical protein YP_002980339.1 PFAM: coenzyme A transferase; KEGG: rso:RSc0471 transferase protein YP_002980340.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0472 transcription regulator protein YP_002980341.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc0473 acyl-CoA dehydrogenase oxidoreductase protein YP_002980342.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: rso:RSc0474 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein YP_002980343.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002980344.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: reu:Reut_A0449 hypothetical protein YP_002980345.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002980346.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc0477 hypothetical protein YP_002980347.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc0478 ABC transporter ATP-binding protein YP_002980348.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0479 transcription regulator protein YP_002980349.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rso:RSc0480 glutamate dehydrogenase (NAD(P)+) oxidoreductase protein YP_002980350.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc0481 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002980351.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0482 glutamate/aspartate transmembrane ABC transporter protein YP_002980352.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0483 glutamate/aspartate transmembrane ABC transporter protein YP_002980353.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0484 glutamate/aspartate transport ATP-binding ABC transporter protein YP_002980354.1 PFAM: glutamine amidotransferase class-II; KEGG: rso:RSc0485 hypothetical protein YP_002980355.1 PFAM: MOFRL domain protein; KEGG: rso:RSc0486 hydroxypyruvate reductase oxidoreductase protein YP_002980356.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002980357.1 KEGG: rso:RSc0488 transmembrane protein YP_002980358.1 PFAM: OsmC family protein; KEGG: rso:RSc0489 hypothetical protein YP_002980359.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002980360.1 forms a direct contact with the tRNA during translation YP_002980361.1 KEGG: rso:RSc0492 hypothetical protein YP_002980362.1 PFAM: protein of unknown function DUF583; KEGG: rso:RSc0493 hypothetical protein YP_002980363.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_002980364.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002980365.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002980366.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002980367.1 PFAM: phosphoglycerate mutase; KEGG: rso:RSc0499 phosphoglycerate mutase 2 protein YP_002980368.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: cti:RALTA_A0450 membrane lipoprotein, DUF165 YP_002980369.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002980370.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002980371.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rso:RSc0502 glycerophosphoryl diester phosphodiesterase, periplasmic precursor protein YP_002980372.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002980373.1 involved in de novo purine biosynthesis YP_002980374.1 PFAM: helix-turn-helix Fis-type; KEGG: rso:RSc0505 DNA-binding protein fis YP_002980375.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc0506 NifR3-like protein YP_002980376.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 amino acid dehydrogenase transmembrane protein YP_002980377.1 TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rso:RSc0508 hypothetical protein YP_002980378.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rso:RSc0509 Xaa-Pro aminopeptidase YP_002980379.1 KEGG: rso:RSc0510 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; MHYT domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002980380.1 PFAM: Nucleotidyl transferase; KEGG: rso:RSc0511 mannose-1-phosphate guanyltransferase-related protein YP_002980381.1 PFAM: branched-chain amino acid transport; KEGG: rso:RSc0512 hypothetical protein YP_002980382.1 PFAM: AzlC family protein; KEGG: rso:RSc0513 hypothetical protein YP_002980383.1 PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc0514 hypothetical protein YP_002980384.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: rso:RSc0515 organic solvent tolerance transmembrane protein YP_002980385.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc0516 peptidyl-prolyl cis-trans isomerase YP_002980386.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002980387.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002980388.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0519 hypothetical protein YP_002980389.1 KEGG: rso:RSc0520 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002980390.1 PFAM: protein of unknown function DUF45; KEGG: rso:RSc0521 hypothetical protein YP_002980391.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0522 acyltransferase transmembrane protein YP_002980392.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_002980393.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002980394.1 KEGG: rso:RSc0525 signal peptide protein YP_002980395.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002980396.1 Transfers the fatty acyl group on membrane lipoproteins YP_002980397.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: rso:RSc0528 hypothetical protein YP_002980398.1 KEGG: hypothetical protein LOC769970 YP_002980399.1 contains unknown N-terminal domain/ metalloprotease C-terminal domain YP_002980400.1 PFAM: PhoH family protein; KEGG: rme:Rmet_0452 PhoH-like protein YP_002980401.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002980402.1 KEGG: rso:RSc0532 hypothetical protein YP_002980403.1 KEGG: rso:RSc0533 transmembrane protein YP_002980404.1 PFAM: OmpW family protein; KEGG: bpd:BURPS668_3797 OmpW family protein YP_002980405.1 KEGG: rso:RSc0534 lipoprotein transmembrane YP_002980406.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bph:Bphy_1704 AMP-dependent synthetase and ligase YP_002980407.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002980408.1 PFAM: MaoC domain protein dehydratase; KEGG: pfl:PFL_2941 MaoC-like domain-containing protein YP_002980409.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002980410.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_002980411.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0538 transcription regulator protein YP_002980412.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: rso:RSc0539 ATP-dependent RNA helicase protein YP_002980413.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_002980414.1 PFAM: pirin; KEGG: rso:RSc0541 pirin-like protein YP_002980415.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc0542 transcription regulator protein YP_002980416.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc0543 response regulator transcription regulator protein YP_002980417.1 PFAM: cupin; KEGG: spe:Spro_2546 cupin 2 domain-containing protein YP_002980418.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RSc0545 oxidoreductase protein YP_002980419.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcj:BCAS0107 LysR family regulatory protein YP_002980420.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bur:Bcep18194_C7600 major facilitator transporter YP_002980421.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: bur:Bcep18194_C7599 succinylglutamate desuccinylase/aspartoacylase YP_002980422.1 PFAM: regulatory protein TetR; KEGG: bte:BTH_II0405 TetR family transcriptional regulator YP_002980423.1 PFAM: FAD dependent oxidoreductase; KEGG: bpd:BURPS668_A2821 arylesterase/monoxygenase YP_002980424.1 PFAM: alpha/beta hydrolase fold; KEGG: bte:BTH_II0402 alpha/beta fold family hydrolase YP_002980425.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rso:RSc0547 sugar transporter transmembrane protein YP_002980426.1 PFAM: protein of unknown function DUF485; KEGG: bur:Bcep18194_B1981 hypothetical protein YP_002980427.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bur:Bcep18194_B1980 Na+/solute symporter YP_002980428.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; cyclic nucleotide-binding; SMART: CBS domain containing protein; KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein YP_002980429.1 3'-5' exonuclease of DNA polymerase III YP_002980430.1 KEGG: rso:RSc0548 hypothetical protein YP_002980431.1 PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc0549 transmembrane sensor histidine kinase transcription regulator protein YP_002980432.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc0550 response regulator transcription regulator protein YP_002980433.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002980434.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002980435.1 KEGG: rso:RSc0553 hypothetical protein YP_002980436.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002980437.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002980438.1 PFAM: integral membrane protein TerC; KEGG: rso:RSc0556 hypothetical protein YP_002980439.1 KEGG: eba:ebB136 fimbrial protein precursor PilE (MS11 antigen) YP_002980441.1 KEGG: rso:RSc0558 type 4 fimbrial pilin signal peptide protein YP_002980442.1 PFAM: O-antigen polymerase; KEGG: rso:RSc0559 hypothetical protein YP_002980444.1 PFAM: O-antigen polymerase; KEGG: rso:RSc0559 hypothetical protein YP_002980445.1 KEGG: rso:RSc0558 type 4 fimbrial pilin signal peptide protein YP_002980446.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002980447.1 PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc0561 signal peptide protein YP_002980448.1 KEGG: rso:RSc0562 hypothetical protein YP_002980449.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0563 hypothetical protein YP_002980450.1 KEGG: rso:RSc0564 hypothetical protein YP_002980451.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0565 ADP-heptose--lipopolysaccharide heptosyltransferase II protein YP_002980452.1 KEGG: rso:RSc0566 hypothetical protein YP_002980453.1 PFAM: AzlC family protein; KEGG: rso:RSc0568 hypothetical protein YP_002980454.1 PFAM: branched-chain amino acid transport; KEGG: rso:RSc0569 hypothetical protein YP_002980455.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0570 hypothetical protein YP_002980456.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002980457.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002980458.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_002980459.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002980460.1 KEGG: rso:RSc0575 phosphoribosylaminoimidazole carboxylase catalytic subunit protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002980461.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002980462.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: rso:RSc0577 hypothetical protein YP_002980463.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rso:RSc0580 lipase / esterase protein YP_002980464.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rso:RSc0583 molybdopterin-guanine dinucleotide biosynthesis protein B YP_002980465.1 KEGG: rso:RSc0584 D-alanyl-D-alanine carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_002980466.1 TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit; KEGG: psb:Psyr_3245 ATP-dependent DNA ligase YP_002980467.1 KEGG: bph:Bphy_0980 Ku protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein YP_002980468.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0585 transport transmembrane protein YP_002980469.1 KEGG: rso:RSc0586 hypothetical protein YP_002980470.1 KEGG: rso:RSc0587 hypothetical protein YP_002980471.1 PFAM: protein of unknown function DUF1045; KEGG: reh:H16_B1290 hypothetical protein YP_002980472.1 PFAM: amidohydrolase; amidohydrolase; KEGG: reu:Reut_B4184 amidohydrolase:amidohydrolase-like YP_002980473.1 KEGG: rso:RSc0588 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein YP_002980474.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: bph:Bphy_1275 methyl-accepting chemotaxis sensory transducer YP_002980475.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1 YP_002980476.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002980477.1 KEGG: rme:Rmet_1928 hypothetical protein YP_002980478.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rme:Rmet_1929 transcriptional regulator, GntR family YP_002980479.1 PFAM: monooxygenase FAD-binding; KEGG: cti:RALTA_A0534 salicylate 1-monooxygenase YP_002980480.1 PFAM: extracellular ligand-binding receptor; KEGG: reh:H16_A0577 ABC-type transporter, periplasmic component: HAAT family YP_002980481.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc0590 transcription regulator protein YP_002980482.1 KEGG: rso:RSc0591 hypothetical protein YP_002980483.1 KEGG: rso:RSc0592 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002980485.1 KEGG: rso:RSc0593 hypothetical protein YP_002980486.1 KEGG: rso:RSc0594 hypothetical protein YP_002980487.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 outer membrane receptor signal peptide protein YP_002980488.1 KEGG: bpy:Bphyt_4932 hypothetical protein YP_002980489.1 KEGG: bcn:Bcen_1390 hypothetical protein YP_002980490.1 KEGG: rso:RSc0596 hypothetical protein YP_002980491.1 KEGG: rso:RSc0597 hypothetical protein YP_002980492.1 KEGG: rso:RSc0598 hypothetical protein YP_002980493.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rso:RSc0599 transcription regulator protein YP_002980494.1 PFAM: protein of unknown function DUF330; KEGG: rso:RSc0600 hypothetical protein YP_002980495.1 PFAM: mammalian cell entry related domain protein; KEGG: rso:RSc0601 hypothetical protein YP_002980496.1 PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0602 hypothetical protein YP_002980497.1 PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0603 hypothetical protein YP_002980498.1 KEGG: mgi:Mflv_5091 triple helix repeat-containing collagen YP_002980499.1 KEGG: rso:RSc0604 hydrolase oxidoreductase protein; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase YP_002980500.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rso:RSp0069 bifunctional: glutathione-dependent formaldehyde dehydrogenase/alcohol dehydrogenase class III YP_002980501.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSc0606 methyl-accepting chemotaxis transmembrane protein YP_002980502.1 PFAM: Glutathione S-transferase domain; KEGG: bac:BamMC406_3382 glutathione S-transferase domain-containing protein YP_002980503.1 KEGG: bxe:Bxe_B2626 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002980504.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bac:BamMC406_5978 antibiotic biosynthesis monooxygenase YP_002980505.1 PFAM: saccharopine dehydrogenase; KEGG: bur:Bcep18194_C7476 saccharopine dehydrogenase YP_002980506.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_002980507.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6665 major facilitator superfamily metabolite/H(+) symporter YP_002980508.1 KEGG: bcm:Bcenmc03_6262 extracellular solute-binding protein YP_002980509.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bam:Bamb_5626 LysR family transcriptional regulator YP_002980510.1 KEGG: bph:Bphy_5179 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002980511.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002980512.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002980513.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: rso:RSc0643 hypothetical protein YP_002980514.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0644 transmembrane protein YP_002980515.1 PFAM: GtrA family protein; KEGG: rme:Rmet_0658 GtrA-like protein YP_002980516.1 PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0656 glycosyl transferase, family 2 YP_002980517.1 KEGG: rme:Rmet_0654 hypothetical protein YP_002980518.1 KEGG: rso:RSc0648 transmembrane protein YP_002980519.1 PFAM: TadE family protein; KEGG: rso:RSc0649 transmembrane protein YP_002980520.1 PFAM: type II secretion system protein; KEGG: rso:RSc0650 tight adherence TadC-related transmembrane protein YP_002980521.1 PFAM: type II secretion system protein; KEGG: rso:RSc0651 tight adherence TadB-related transmembrane protein YP_002980522.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: rso:RSc0652 secretion ATPase protein YP_002980523.1 KEGG: rso:RSc0653 pilus assembly protein YP_002980524.1 KEGG: rso:RSc0654 lipoprotein YP_002980525.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: rso:RSc0655 outer membrane channel protein YP_002980526.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rso:RSc0656 pilus assembly transmembrane protein YP_002980527.1 PFAM: peptidase A24A prepilin type IV; KEGG: rso:RSc0657 prepilin peptidase transmembrane protein YP_002980528.1 PFAM: Flp/Fap pilin component; KEGG: rso:RSc0660 pilin transmembrane protein YP_002980530.1 PFAM: protein of unknown function DUF477; KEGG: rso:RSc0662 hypothetical protein YP_002980531.1 PFAM: protein of unknown function DUF477; KEGG: rso:RSc0663 glycine rich transmembrane protein YP_002980532.1 PFAM: LemA family protein; KEGG: rso:RSc0664 lipoprotein YP_002980534.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: rso:RSc0665 dihydrodipicolinate synthase-like transmembrane protein YP_002980535.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002980536.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rso:RSc0667 rubredoxin protein YP_002980537.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc0668 twitching motility two-component response regulator transcription regulator protein YP_002980538.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc0669 twitching motility two-component response regulator transcription regulator protein YP_002980539.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rso:RSc0670 twitching motility protein YP_002980540.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: rso:RSc0671 twitching motility transmembrane protein YP_002980541.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: rso:RSc0672 composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein YP_002980542.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: cti:RALTA_A2399 deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding YP_002980543.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: rso:RSc0674 ribosomal small subunit pseudouridine synthase A protein YP_002980544.1 PFAM: protein of unknown function DUF179; KEGG: rso:RSc0675 hypothetical protein YP_002980545.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002980546.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002980547.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002980548.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002980549.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein YP_002980550.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_002980551.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: reu:Reut_A0712 dTDP-glucose 4,6-dehydratase YP_002980552.1 KEGG: cti:RALTA_A2389 TDP-rhamnose synthetase, NAD(P)-binding; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase YP_002980553.1 KEGG: rso:RSc0685 dTDP-4-dehydrorhamnose 3,5-epimerase protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002980554.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: cvi:CV_4115 polysaccharide biosynthesis protein YP_002980555.1 KEGG: reu:Reut_A2565 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002980556.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: hya:HY04AAS1_1611 NAD-dependent epimerase/dehydratase YP_002980557.1 PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: pde:Pden_3558 polysaccharide biosynthesis protein CapD YP_002980558.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bpt:Bpet2303 sugar aminotransferase YP_002980559.1 PFAM: aldo/keto reductase; KEGG: lbf:LBF_1982 aryl-alcohol dehydrogenase-related oxidoreductase YP_002980560.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cak:Caul_2891 acylneuraminate cytidylyltransferase YP_002980561.1 PFAM: aminotransferase class-III; KEGG: swo:Swol_0203 aminotransferase, class III pyridoxal-phosphate dependent YP_002980562.1 PFAM: glycosyltransferase 28 domain; KEGG: har:HEAR1124 polysaccharide biosynthesis protein YP_002980563.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_3836 flagellin modification protein FlmH YP_002980564.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: har:HEAR1126 N-acetylneuraminate synthase YP_002980567.1 KEGG: amr:AM1_3974 hypothetical protein YP_002980568.1 KEGG: mex:Mext_4583 polysaccharide biosynthesis protein YP_002980569.1 KEGG: lbf:LBF_1966 acetyltransferase (isoleucine patch superfamily) YP_002980571.1 PFAM: glycosyl transferase group 1; KEGG: mes:Meso_0492 glycosyl transferase, group 1 YP_002980572.1 KEGG: cvi:CV_4122 hypothetical protein YP_002980573.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein YP_002980574.1 PFAM: sugar transferase; KEGG: bav:BAV0093 sugar transferase YP_002980575.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sye:Syncc9902_0043 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_002980576.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rme:Rmet_2722 lipopolysaccharide biosynthesis YP_002980577.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: rso:RSc0691 phosphomannomutase or phosphoglucomutase protein YP_002980578.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0692 lipopolysaccharide heptosyltransferase protein YP_002980579.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_002980580.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: rso:RSc0694 hypothetical protein YP_002980581.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0695 porin (omp) ABC transporter protein YP_002980582.1 SMART: rhodanese; KEGG: rso:RSc0696 hypothetical protein YP_002980583.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; methyltransferase small; KEGG: rso:RSc0697 protein-L-isoaspartate O-methyltransferase YP_002980584.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0698 transcription regulator protein YP_002980585.1 PFAM: protein of unknown function UPF0153; KEGG: azo:azo0713 hypothetical protein YP_002980586.1 KEGG: rso:RSc0700 hypothetical protein YP_002980587.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002980588.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc0702 NADH-dependent flavin oxidoreductase oxidoreductase protein YP_002980589.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002980590.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A2328 LysR family transcriptional regulator YP_002980591.1 KEGG: bmj:BMULJ_00932 trypsin-like serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002980592.1 PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_3419 M48 family peptidase YP_002980593.1 KEGG: bmj:BMULJ_00934 hypothetical protein YP_002980594.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: bbt:BBta_7792 glutathione-regulated potassium-efflux system protein KefC (K(+)/H(+) antiporter) YP_002980595.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bmj:BMULJ_00936 thioredoxin 2 YP_002980596.1 KEGG: bmu:Bmul_2303 hypothetical protein YP_002980597.1 KEGG: mfa:Mfla_1163 hypothetical protein YP_002980598.1 KEGG: oan:Oant_4474 hypothetical protein YP_002980599.1 KEGG: oan:Oant_4473 hypothetical protein YP_002980600.1 PFAM: heat shock protein Hsp20; KEGG: bmu:Bmul_2294 hypothetical protein YP_002980601.1 KEGG: mfa:Mfla_1168 FtsH-2 peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: ATPase AAA; peptidase M41; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002980602.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: mfa:Mfla_1169 cardiolipin synthetase 2 YP_002980603.1 PFAM: transposase IS3/IS911 family protein; KEGG: mca:MCA0906 ISMca2, transposase, OrfA YP_002980604.1 PFAM: integrase catalytic region; KEGG: mca:MCA0907 ISMca2, transposase, OrfB YP_002980605.1 PFAM: heat shock protein Hsp20; KEGG: mfa:Mfla_1171 heat shock protein HSP20 YP_002980606.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: bmu:Bmul_2286 DNA binding domain-containing protein YP_002980607.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A2330 LysR family transcriptional regulator YP_002980608.1 KEGG: mpt:Mpe_A2331 hypothetical protein YP_002980609.1 PFAM: Prophage CP4-57 regulatory; KEGG: mpt:Mpe_A2332 phage transcriptional regulator, AlpA YP_002980610.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: mpt:Mpe_A2333 chromosome partitioning protein YP_002980611.1 KEGG: bpt:Bpet1441 hypothetical protein YP_002980612.1 KEGG: mpt:Mpe_A2334 hypothetical protein YP_002980613.1 KEGG: mpt:Mpe_A2335 hypothetical protein YP_002980614.1 KEGG: eba:ebA2465 hypothetical protein YP_002980615.1 PFAM: Domain of unknown function DUF1845; KEGG: eba:ebA2462 hypothetical protein YP_002980616.1 KEGG: ajs:Ajs_2235 hypothetical protein YP_002980617.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002980618.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3 YP_002980619.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bmj:BMULJ_00927 NADPH-dependent FMN reductase YP_002980620.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: har:HEAR1960 arsenate reductase (glutaredoxin) YP_002980621.1 PFAM: major facilitator superfamily MFS_1; KEGG: har:HEAR1961 major facilitator superfamily transporter transmembrane protein YP_002980622.1 TIGRFAM: arsenical-resistance protein; PFAM: bile acid:sodium symporter; KEGG: bmj:BMULJ_00925 ACR3 family arsenite transporter YP_002980623.1 KEGG: psa:PST_0237 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase YP_002980624.1 PFAM: arsenic resistance operon trans-acting repressor ArsD; KEGG: psa:PST_0238 arsenic operon regulator YP_002980625.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: dac:Daci_0489 protein tyrosine phosphatase YP_002980626.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase YP_002980627.1 SMART: regulatory protein ArsR; KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator YP_002980628.1 KEGG: aav:Aave_0554 hypothetical protein YP_002980629.1 KEGG: mpt:Mpe_A2349 hypothetical protein YP_002980630.1 KEGG: bpt:Bpet1047 hypothetical protein YP_002980631.1 KEGG: ajs:Ajs_2229 hypothetical protein YP_002980632.1 KEGG: ajs:Ajs_2228 hypothetical protein YP_002980633.1 KEGG: ajs:Ajs_2227 hypothetical protein YP_002980634.1 KEGG: bpt:Bpet1466 hypothetical protein YP_002980635.1 KEGG: mpt:Mpe_A2362 hypothetical protein YP_002980636.1 KEGG: eba:ebA2436 hypothetical protein YP_002980637.1 PFAM: protein of unknown function DUF932; KEGG: bpt:Bpet1317 hypothetical protein YP_002980638.1 KEGG: eba:ebA2434 hypothetical protein YP_002980639.1 KEGG: mpt:Mpe_A2366 hypothetical protein YP_002980640.1 SMART: DEAD-like helicases; KEGG: mpt:Mpe_A2368 plasmid-related protein YP_002980641.1 KEGG: mpt:Mpe_A2375 hypothetical protein YP_002980642.1 KEGG: mpt:Mpe_A2376 hypothetical protein YP_002980643.1 KEGG: ajs:Ajs_2211 secreted protein YP_002980644.1 PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein YP_002980645.1 KEGG: eba:ebA2423 hypothetical protein YP_002980646.1 KEGG: mpt:Mpe_A2380 hypothetical protein YP_002980647.1 KEGG: mpt:Mpe_A2381 hypothetical protein YP_002980648.1 KEGG: ajs:Ajs_2194 hypothetical protein YP_002980649.1 KEGG: mpt:Mpe_A2387 hypothetical protein YP_002980650.1 KEGG: eba:ebB70 hypothetical protein YP_002980651.1 KEGG: eba:ebB69 hypothetical protein YP_002980652.1 KEGG: mpt:Mpe_A2390 hypothetical protein YP_002980653.1 KEGG: eba:ebA2409 hypothetical protein YP_002980654.1 KEGG: eba:ebA2408 hypothetical protein YP_002980655.1 KEGG: eba:ebA2407 hypothetical protein YP_002980656.1 KEGG: ajs:Ajs_2186 hypothetical protein YP_002980657.1 PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A2395 hypothetical protein YP_002980658.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: ajs:Ajs_2184 DNA repair protein RadC YP_002980659.1 PFAM: protein of unknown function DUF1525; KEGG: ajs:Ajs_2183 hypothetical protein YP_002980660.1 PFAM: protein of unknown function DUF1527; KEGG: eba:ebA2511 hypothetical protein YP_002980661.1 KEGG: eba:ebA2397 hypothetical protein YP_002980662.1 KEGG: eba:ebA2396 hypothetical protein YP_002980663.1 KEGG: eba:ebA2395 hypothetical protein YP_002980664.1 KEGG: eba:ebB78 hypothetical protein YP_002980665.1 KEGG: pla:Plav_3433 hypothetical protein YP_002980666.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: pla:Plav_3434 AbrB family transcriptional regulator YP_002980667.1 PFAM: Relaxase; protein of unknown function DUF1528; KEGG: mpt:Mpe_A2405 hypothetical protein YP_002980668.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mpt:Mpe_A2406 hypothetical protein YP_002980669.1 PFAM: LysR substrate-binding; KEGG: eba:ebA2490 transcriptional regulator YP_002980670.1 PFAM: integrase family protein; KEGG: ajs:Ajs_1977 phage integrase family protein YP_002980671.1 KEGG: rso:RSc0707 hypothetical protein YP_002980672.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_002980673.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde Dehydrogenase; KEGG: mms:mma_2905 succinate-semialdehyde dehydrogenase (NADP+) YP_002980674.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: rso:RSc0708 hypothetical protein YP_002980675.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0709 hypothetical protein YP_002980676.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0710 aminotransferase YP_002980677.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002980678.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002980679.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_002980680.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002980681.1 KEGG: rso:RSc0715 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_002980682.1 KEGG: rso:RSc0716 type 4 fimbrial pilin related transmembrane protein YP_002980683.1 KEGG: rso:RSc0717 type-4 frimbrial pilin-related signal peptide protein YP_002980684.1 KEGG: rso:RSc0719 signal peptide protein YP_002980685.1 KEGG: rso:RSc0720 hypothetical protein YP_002980686.1 KEGG: xfm:Xfasm12_1769 fimbrial protein FimT YP_002980687.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: cvi:CV_0479 type-4 fimbrial biogenesis protein YP_002980688.1 KEGG: noc:Noc_2272 type IV pilus assembly protein PilW YP_002980689.1 KEGG: pca:Pcar_2156 Tfp pilus assembly protein PilX YP_002980690.1 KEGG: noc:Noc_2274 fimbrial assembly protein YP_002980692.1 KEGG: xoo:XOO3195 type IV pilin YP_002980693.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002980694.1 PFAM: ATP-cone domain protein; KEGG: rso:RSc0728 transcriptional regulator NrdR YP_002980695.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002980696.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rso:RSc0730 oxidoreductase protein YP_002980697.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rso:RSc0731 thioesterase protein YP_002980698.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc0732 TolQ-like transport transmembrane protein YP_002980699.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc0733 TolR-related transport transmembrane protein YP_002980700.1 TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA; KEGG: rso:RSc0734 TolA-like transport transmembrane protein YP_002980701.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002980702.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0736 peptidoglycan-associated lipoprotein precursor YP_002980703.1 TIGRFAM: tol-pal system protein YbgF; KEGG: rso:RSc0737 hypothetical protein YP_002980704.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rso:RSc0738 signal peptide protein YP_002980705.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0739 hypothetical protein YP_002980706.1 KEGG: bvi:Bcep1808_2268 hypothetical protein YP_002980709.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: ajs:Ajs_2101 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_002980710.1 KEGG: bvi:Bcep1808_2268 hypothetical protein YP_002980712.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6068 transposase IS3/IS911 YP_002980713.1 PFAM: integrase catalytic region; KEGG: fgenesh4_pg.C_scaffold_13109000001. YP_002980715.1 KEGG: bph:Bphy_1899 metallophosphoesterase YP_002980716.1 KEGG: mba:Mbar_A2778 H(+)-transporting ATPase YP_002980718.1 KEGG: bvi:Bcep1808_2268 hypothetical protein YP_002980722.1 KEGG: hypothetical protein YP_002980723.1 KEGG: bvi:Bcep1808_7562 hypothetical protein YP_002980725.1 PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; KEGG: bvi:Bcep1808_2031 peptidase C14, caspase catalytic subunit P20 YP_002980727.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rde:RD1_3999 RNA polymerase ECF-type sigma factor YP_002980728.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmj:BMULJ_01717 hypothetical protein YP_002980729.1 PFAM: PfkB domain protein; KEGG: bur:Bcep18194_A5029 ribokinase family sugar kinase YP_002980730.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bmj:BMULJ_01715 permease of the major facilitator superfamily YP_002980731.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bmj:BMULJ_01714 gluconate 2-dehydrogenase YP_002980732.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bch:Bcen2424_1729 LacI family transcription regulator YP_002980733.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rso:RSc0745 hypothetical protein YP_002980734.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: bpl:BURPS1106A_A0453 acyl-CoA dehydrogenase domain-containing protein YP_002980735.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: rso:RSc0746 alpha-ketoglutarate-dependent taurine dioxygenase oxidoreductase protein YP_002980736.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0747 hypothetical protein YP_002980737.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc0748 hypothetical protein YP_002980738.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0749 ABC transporter ATP-binding protein YP_002980739.1 KEGG: rso:RSc0750 hypothetical protein YP_002980740.1 KEGG: rso:RSc0751 hypothetical protein YP_002980741.1 KEGG: rso:RSc0752 hypothetical protein YP_002980742.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: rso:RSc0753 hypothetical protein YP_002980743.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc0754 antioxidant oxidoreductase protein YP_002980744.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rso:RSc0755 hypothetical protein YP_002980745.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0756 glutaryl-CoA dehydrogenase oxidoreductase YP_002980746.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: rso:RSc0757 transcription regulator protein YP_002980747.1 TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: rso:RSc0758 oxygenase oxidoreductase protein YP_002980748.1 TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: rso:RSc0759 hydrolase protein YP_002980749.1 TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: rso:RSc0760 hypothetical protein YP_002980750.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0761 transcription regulator protein YP_002980751.1 KEGG: rso:RSc0762 hypothetical protein YP_002980752.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rso:RSc0763 monooxygenase oxidoreductase protein YP_002980753.1 PFAM: transcriptional regulator TrmB; KEGG: cyt:cce_5301 hypothetical protein YP_002980754.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: mms:mma_2529 hypothetical protein YP_002980755.1 PFAM: mobilisation protein; KEGG: mms:mma_2528 hypothetical protein YP_002980756.1 PFAM: integrase family protein; KEGG: bvi:Bcep1808_2666 phage integrase family protein YP_002980757.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002980758.1 PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein YP_002980759.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0766 cyclopropane-fatty-acyl-phospholipid synthase protein YP_002980760.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_002980761.1 KEGG: rso:RSc0770 transmembrane dehydrogenase (small subunit) oxidoreductase protein YP_002980762.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc0771 transmembrane dehydrogenase (large subunit) oxidoreductase protein YP_002980763.1 PFAM: cytochrome C class I; KEGG: rso:RSc0772 oxidoreductase dehydrogenase (cytochrome C subunit) signal peptide protein YP_002980764.1 PFAM: AsmA family protein; KEGG: rso:RSc0773 hypothetical protein YP_002980765.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rso:RSc0774 hypothetical protein YP_002980766.1 PFAM: Thioredoxin domain; KEGG: bvi:Bcep1808_2659 thioredoxin YP_002980767.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation-binding protein; KEGG: rso:RSc0777 hypothetical protein YP_002980768.1 PFAM: DSBA oxidoreductase; KEGG: rso:RSc0778 hypothetical protein YP_002980769.1 KEGG: rso:RSc0779 thioredoxin protein; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_002980770.1 activates fatty acids by binding to coenzyme A YP_002980771.1 KEGG: rso:RSc0781 aankyrin repeat-containing protein YP_002980772.1 PFAM: ChaC family protein; KEGG: rso:RSc0782 hypothetical protein YP_002980773.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc0784 FKBP-type peptidyl-prolyl cis-trans isomerase YP_002980774.1 PFAM: YaeQ family protein; KEGG: rso:RSc0785 hypothetical protein YP_002980775.1 KEGG: rso:RSc0786 hypothetical protein YP_002980776.1 KEGG: rso:RSc0787 hypothetical protein YP_002980777.1 KEGG: rso:RSc0788 hypothetical protein YP_002980778.1 KEGG: rso:RSc0789 hypothetical protein YP_002980779.1 PFAM: YceI family protein; KEGG: rso:RSc0790 signal peptide protein YP_002980780.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002980781.1 PFAM: lipase chaperone; KEGG: rme:Rmet_3795 lipase chaperone YP_002980782.1 PFAM: alpha/beta hydrolase fold; protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: bte:BTH_II0639 lipase YP_002980783.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rso:RSc0793 hypothetical protein YP_002980784.1 PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 hypothetical protein YP_002980785.1 KEGG: rso:RSc0795 hypothetical protein YP_002980786.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc0796 transmembrane protein YP_002980787.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002980788.1 PFAM: purine nucleoside permease; KEGG: rso:RSc0798 purine nucleoside permease protein YP_002980789.1 PFAM: purine nucleoside permease; KEGG: rso:RSc0799 purine nucleoside permease protein YP_002980790.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0800 ferrisiderophore receptor signal peptide protein YP_002980791.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: rso:RSc0802 stomatin-like transmembrane protein YP_002980792.1 PFAM: protein of unknown function DUF107; KEGG: rso:RSc0803 hypothetical protein YP_002980793.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc0804 transcription regulator protein YP_002980794.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rso:RSc0805 hypothetical protein YP_002980795.1 PFAM: class II aldolase/adducin family protein; KEGG: rso:RSc0806 hypothetical protein YP_002980796.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002980797.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: rso:RSc0808 low specificity L-threonine aldolase protein YP_002980798.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0809 hypothetical protein YP_002980799.1 PFAM: SirA family protein; KEGG: rso:RSc0810 hypothetical protein YP_002980800.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0814 hypothetical protein YP_002980801.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rme:Rmet_4989 endonuclease/exonuclease/phosphatase YP_002980802.1 KEGG: bcj:BCAM2757 two-component regulatory system, sensor kinase protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; histidine kinase A domain protein YP_002980803.1 PFAM: fimbrial protein; KEGG: pfl:PFL_3922 type I pilus biogenesis protein YP_002980804.1 PFAM: Pilus assembly chaperone protein; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl01_3043 pili assembly chaperone YP_002980805.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl01_3044 fimbrial biogenesis outer membrane usher protein YP_002980806.1 PFAM: transposase IS66; KEGG: bcm:Bcenmc03_6939 transposase IS66 YP_002980807.1 PFAM: IS66 Orf2 family protein; KEGG: ajs:Ajs_2917 IS66 Orf2 family protein YP_002980808.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_B1867 hypothetical protein YP_002980809.1 PFAM: fimbrial protein; KEGG: pfo:Pfl01_3037 fimbrial protein YP_002980810.1 PFAM: protein of unknown function DUF748; KEGG: rso:RSc0896 transmembrane protein YP_002980811.1 KEGG: rso:RSc0897 hydrolase protein; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_002980812.1 Involved in ubiquinone biosynthesis YP_002980813.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc0899 outer membrane lipoprotein transmembrane YP_002980814.1 PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0900 signal peptide protein YP_002980815.1 negatively supercoils closed circular double-stranded DNA YP_002980816.1 KEGG: rso:RSc0902 signal peptide protein YP_002980817.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002980818.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: rso:RSc0904 bifunctional chorismate mutase/prephenate dehydratase YP_002980819.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002980820.1 PFAM: prephenate dehydrogenase; KEGG: rso:RSc0906 prephenate dehydrogenase oxidoreductase protein YP_002980821.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002980822.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002980823.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002980824.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002980825.1 KEGG: rso:RSc0911 hypothetical protein YP_002980826.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rso:RSc0912 hypothetical protein YP_002980827.1 KEGG: rso:RSc0913 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; Ketopantoate reductase ApbA/PanE domain protein YP_002980828.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: rso:RSc0914 ADP-heptose synthase protein YP_002980829.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rso:RSc0915 ADP-L-glycero-D-manno-heptose-6-epimerase protein YP_002980830.1 KEGG: rso:RSc0916 ComEA-related signal peptide protein YP_002980831.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_002980832.1 TIGRFAM: lytic murein transglycosylase B; KEGG: rso:RSc0918 membrane-bound lytic murein transglycosylase B protein YP_002980833.1 PFAM: histone deacetylase superfamily; KEGG: rso:RSc0919 hypothetical protein YP_002980834.1 part of the metNIQ transport system for methionine YP_002980835.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0921 transmembrane ABC transporter protein YP_002980836.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc0922 signal peptide protein YP_002980837.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: rso:RSc0923 electron transfer flavoprotein subunit beta YP_002980838.1 PFAM: electron transfer flavoprotein alpha subunit ; electron transfer flavoprotein alpha/beta-subunit; KEGG: rso:RSc0924 electron transfer flavoprotein subunit alpha YP_002980839.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0925 acyl-CoA dehydrogenase oxidoreductase protein YP_002980840.1 catalyzes the oxidative deamination of D-amino acids YP_002980841.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0927 leucine-responsive regulatory DNA-binding transcription regulator protein YP_002980842.1 KEGG: vei:Veis_2978 alkaline phosphatase YP_002980843.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rso:RSc0928 hypothetical protein YP_002980844.1 KEGG: rso:RSc0929 hypothetical protein YP_002980845.1 KEGG: rso:RSc0930 hypothetical protein YP_002980846.1 KEGG: rso:RSc0931 signal peptide protein YP_002980847.1 KEGG: rso:RSc0932 membrane-bound dehydrogenase oxidoreductase protein YP_002980848.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002980849.1 Essential for efficient processing of 16S rRNA YP_002980850.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002980851.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002980852.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc0937 hypothetical protein YP_002980853.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: rso:RSc0938 adenosylcobinamide-phosphate synthase YP_002980854.1 KEGG: rso:RSc0939 hypothetical protein YP_002980855.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002980856.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0941 integral membrane protease transmembrane protein YP_002980857.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_002980858.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_002980859.1 PFAM: protein of unknown function DUF615; KEGG: rso:RSc0944 hypothetical protein YP_002980860.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rso:RSc0945 PmbA protein (TldE protein) YP_002980861.1 PFAM: dihydrofolate reductase region; KEGG: rso:RSc0946 dihydrofolate reductase oxidoreductase protein YP_002980862.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002980863.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rso:RSc0948 hypothetical protein YP_002980864.1 PFAM: integral membrane protein TerC; KEGG: rso:RSc0949 hypothetical protein YP_002980865.1 TIGRFAM: methyltransferase; KEGG: rso:RSc0950 hypothetical protein YP_002980866.1 PFAM: protein of unknown function DUF323; KEGG: rso:RSc0951 hypothetical protein YP_002980867.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: rso:RSc0952 ATP-dependent RNA helicase protein YP_002980868.1 KEGG: rso:RSc0953 hypothetical protein YP_002980869.1 KEGG: rso:RSc0971 hypothetical protein YP_002980870.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc0973 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002980871.1 KEGG: rso:RSc0974 hypothetical protein YP_002980872.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc0975 ABC transporter ATP-binding protein YP_002980873.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002980874.1 PFAM: Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: rso:RSc0977 transglycosylase signal peptide protein YP_002980875.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002980876.1 PFAM: chromate transporter; KEGG: rso:RSc0979 hypothetical protein YP_002980877.1 PFAM: chromate transporter; KEGG: rso:RSc0980 hypothetical protein YP_002980878.1 PFAM: amino acid permease-associated region; KEGG: rme:Rmet_5046 amino acid permease-associated region YP_002980879.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: cti:RALTA_A0653 histidine permease YP_002980880.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: reh:H16_A2666 ABC-type transporter, ATPase and permease components: LipidE family YP_002980881.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: rso:RSc0981 L-lactate permease transmembrane protein YP_002980882.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bcj:BCAL1674 multidrug efflux system AmrA protein YP_002980883.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pae:PA2018 multidrug efflux protein YP_002980884.1 KEGG: bps:BPSS0716 hypothetical protein YP_002980885.1 PFAM: MASE1 domain protein; PAS fold-3 domain protein; KEGG: rso:RSc0982 hypothetical protein YP_002980886.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0984 gst-related protein YP_002980887.1 PFAM: aminotransferase class I and II; KEGG: rso:RSc0985 aminotransferase protein YP_002980888.1 PFAM: endoribonuclease L-PSP; KEGG: rso:RSc0986 hypothetical protein YP_002980889.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0987 hypothetical protein YP_002980890.1 PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: rso:RSc0988 hypothetical protein YP_002980891.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rso:RSc0989 transcription regulator protein YP_002980892.1 molecular chaperone YP_002980893.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: reh:H16_A2653 G:T/U mismatch-specific DNA glycosylase YP_002980894.1 KEGG: reh:H16_A2651 methyl-accepting chemotaxis protein YP_002980895.1 KEGG: rso:RS02104 hypothetical protein YP_002980896.1 PFAM: Tetratricopeptide TPR_4; KEGG: rso:RSc0994 hypothetical protein YP_002980897.1 KEGG: rso:RSc0995 hypothetical protein YP_002980898.1 KEGG: reu:Reut_A2665 hypothetical protein YP_002980899.1 KEGG: rso:RSc0996 hypothetical protein YP_002980900.1 KEGG: rso:RSc0997 hypothetical protein YP_002980901.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0998 hypothetical protein YP_002980902.1 PFAM: cytochrome C class I; KEGG: rso:RSc0999 periplasmic cytochrome type-c oxidoreductase signal peptide protein YP_002980903.1 KEGG: rso:RSc1000 periplasmic cytochrome type-c oxidoreductase signal peptide protein YP_002980904.1 PFAM: Domain of unknown function DUF1841; KEGG: rso:RSc1001 hypothetical protein YP_002980905.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: rso:RSc1002 hypothetical protein YP_002980906.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: bcm:Bcenmc03_0813 peptidase S10 serine carboxypeptidase YP_002980907.1 PFAM: nitroreductase; KEGG: rso:RSc1004 hypothetical protein YP_002980908.1 KEGG: rso:RSc1005 endonuclease III protein; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein YP_002980909.1 Involved in the electron transport chain YP_002980910.1 PFAM: regulatory protein TetR; KEGG: rso:RSc1007 transcription regulator protein YP_002980911.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rso:RSc1008 poly[D(-)-3-hydroxybutyrate] depolymerase protein YP_002980912.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_002980913.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002980914.1 KEGG: rso:RSc1012 site-specific recombinase transmembrane protein YP_002980915.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: rso:RSc1013 ribokinase protein YP_002980916.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rso:RSc1014 transcriptional regulatory DNA-binding repressor transcription regulator protein YP_002980917.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1015 transmembrane ABC transporter protein YP_002980918.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1016 ABC transporter ATP-binding protein YP_002980919.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1017 sugar-binding periplasmic (PBP) ABC transporter protein YP_002980920.1 TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc1018 hypothetical protein YP_002980921.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1019 pyridoxal-phosphate-dependent aminotransferase (NifS protein) YP_002980922.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rso:RSc1020 scaffold protein YP_002980923.1 TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc1021 hypothetical protein YP_002980924.1 KEGG: rso:RSc1022 hypothetical protein YP_002980925.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_002980926.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_002980927.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: rso:RSc1025 ferredoxin [2Fe-2S] protein YP_002980928.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: rso:RSc1026 hypothetical protein YP_002980929.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 hypothetical protein YP_002980930.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002980931.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc1029 short chain dehydrogenase YP_002980932.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_002980933.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_002980934.1 PFAM: protein of unknown function DUF162; KEGG: rso:RSc1032 transmembrane protein YP_002980935.1 KEGG: rso:RSc1033 hypothetical protein YP_002980936.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rso:RSc1034 2-hydroxyacid dehydrogenase YP_002980937.1 PFAM: protein of unknown function DUF195; KEGG: rso:RSc1035 hypothetical protein YP_002980938.1 KEGG: rso:RSc1036 hypothetical protein YP_002980939.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: rso:RSc1037 molybdopterin biosynthesis MoeA protein YP_002980940.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_002980941.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002980942.1 KEGG: rso:RSc1040 ribonuclease E protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_002980943.1 KEGG: rso:RSc1041 ribosomal large subunit pseudouridine synthase C protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002980944.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc1042 phosphoglycolate phosphatase protein YP_002980945.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rso:RSc1043 hypothetical protein YP_002980946.1 PFAM: peptidase S49; KEGG: rso:RSc1044 protease transmembrane protein YP_002980947.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc1045 hypothetical protein YP_002980948.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002980949.1 PFAM: protein of unknown function DUF177; KEGG: rso:RSc1047 hypothetical protein YP_002980950.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002980951.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002980952.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002980953.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rso:RSc1051 acyl-carrier-protein S-malonyltransferase YP_002980954.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002980955.1 carries the fatty acid chain in fatty acid biosynthesis YP_002980956.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002980957.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_002980958.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: rso:RSc1056 transmembrane sigma-E factor negative regulatory transcription regulator protein YP_002980959.1 KEGG: rso:RSc1057 sigma-E factor regulatory (negative regulator) transcription regulator protein YP_002980960.1 KEGG: rso:RSc1058 periplasmic protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002980961.1 PFAM: glutaredoxin 2; KEGG: rso:RSc1059 hypothetical protein YP_002980962.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002980963.1 KEGG: rso:RSc1061 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002980964.1 KEGG: rso:RSc1062 hypothetical protein YP_002980965.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002980966.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002980967.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002980968.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002980969.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002980970.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_002980971.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002980972.1 KEGG: rso:RSc1070 hypothetical protein YP_002980973.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002980974.1 KEGG: rso:RSc1072 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_002980975.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc1073 two-component system response regulator transcription regulator protein YP_002980976.1 PFAM: peptidoglycan-binding LysM; FecR protein; SMART: peptidoglycan-binding LysM; KEGG: rso:RSc1074 signal peptide protein YP_002980977.1 PFAM: CHASE2 domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc1075 two-component system sensor histidine kinase transcription regulator protein YP_002980979.1 PFAM: transcriptional regulator domain protein; KEGG: rso:RSc1076 two-component system response regulator transcription regulator protein YP_002980980.1 KEGG: rso:RSc1077 hypothetical protein YP_002980981.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RSc1078 transcriptional regulatory DNA-binding transcription regulator protein YP_002980982.1 KEGG: rso:RSc1079 glucarate dehydratase protein; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein YP_002980983.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1080 hexuronate transporter transmembrane protein YP_002980984.1 PFAM: glycoside hydrolase family 31; KEGG: rso:RSc1081 glucosidase protein YP_002980985.1 PFAM: porin Gram-negative type; KEGG: rso:RSc1082 porin transmembrane protein YP_002980986.1 PFAM: aldose 1-epimerase; KEGG: rso:RSc1083 hypothetical protein YP_002980987.1 PFAM: integrase family protein; KEGG: eba:ebA1360 hypothetical protein YP_002980988.1 KEGG: bxe:Bxe_A2408 hypothetical protein YP_002980989.1 KEGG: bch:Bcen2424_0199 hypothetical protein YP_002980990.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bte:BTH_I0107 XRE family transcriptional regulator YP_002980991.1 KEGG: aau:AAur_1713 cell division protein FtsZ YP_002980992.1 KEGG: bxe:Bxe_A2401 hypothetical protein YP_002980993.1 KEGG: oan:Oant_1303 hypothetical protein YP_002980996.1 PFAM: integrase catalytic region; KEGG: mex:Mext_3531 integrase catalytic region YP_002980997.1 PFAM: protein of unknown function DUF924; KEGG: bur:Bcep18194_A4367 hypothetical protein YP_002980998.1 KEGG: pap:PSPA7_2235 hypothetical protein YP_002980999.1 PFAM: aldehyde Dehydrogenase; KEGG: lsp:Bsph_1280 aldehyde dehydrogenase YP_002981000.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I2817 short chain dehydrogenase YP_002981001.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pau:PA14_26880 LysR family transcriptional regulator YP_002981002.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: bja:blr5195 transposase YP_002981003.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmj:BMULJ_03358 LysR family transcriptional regulator YP_002981004.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: xfa:XF1743 esterase YP_002981005.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc1879 amino acids-binding transmembrane protein YP_002981006.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rme:Rmet_3364 IstB-like ATP-binding protein YP_002981007.1 PFAM: integrase catalytic region; KEGG: rme:Rmet_3365 integrase, catalytic region YP_002981009.1 PFAM: UvrD/REP helicase; KEGG: saq:Sare_4120 UvrD/REP helicase YP_002981012.1 KEGG: glo:Glov_1426 hypothetical protein YP_002981013.1 KEGG: dps:DP1078 hypothetical protein YP_002981014.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1110 transcriptional regulatory DNA-binding transcription regulator protein YP_002981015.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1111 hypothetical protein YP_002981016.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rso:RSc1113 hypothetical protein YP_002981017.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc1114 ferredoxin protein YP_002981018.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rso:RSc1115 single-stranded-DNA-specific exonuclease protein YP_002981019.1 KEGG: rso:RSc1116 signal peptide protein YP_002981020.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rso:RSc1117 lipoprotein releasing system transmembrane YP_002981021.1 KEGG: rso:RSc1118 lipoprotein releasing system ATP-binding ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase YP_002981022.1 PFAM: TatD-related deoxyribonuclease; KEGG: rso:RSc1119 deoxyribonuclease protein YP_002981023.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: rso:RSc1120 transporter DNA uptake transmembrane protein YP_002981024.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rso:RSc1121 hypothetical protein YP_002981025.1 PFAM: protein of unknown function DUF403; KEGG: rso:RSc1122 hypothetical protein YP_002981026.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: rso:RSc1123 hypothetical protein YP_002981027.1 KEGG: rso:RSc1124 hypothetical protein YP_002981028.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1125 hydrolase protein YP_002981029.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002981030.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002981031.1 PFAM: protein of unknown function DUF1330; KEGG: rso:RSc1128 hypothetical protein YP_002981032.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002981033.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_002981034.1 KEGG: rso:RSc1131 hypothetical protein YP_002981035.1 PFAM: Hsp33 protein; KEGG: rso:RSc1132 redox regulated molecular chaperone heat-shock-like protein YP_002981036.1 KEGG: rso:RSc1133 hypothetical protein YP_002981037.1 PFAM: protein of unknown function DUF455; KEGG: rso:RSc1134 hypothetical protein YP_002981038.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1135 hydrolase protein YP_002981039.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: rso:RSc1136 hypothetical protein YP_002981040.1 KEGG: rso:RSc1137 hypothetical protein YP_002981041.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc1139 thioredoxin reductase oxidoreductase protein YP_002981042.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rso:RSc1140 hypothetical protein YP_002981043.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: rso:RSc1141 hypothetical protein YP_002981044.1 PFAM: peptidase M50; KEGG: reu:Reut_A1102 peptidase M50 YP_002981045.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002981046.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: rso:RSc1144 hypothetical protein YP_002981047.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002981048.1 PFAM: NlpBDapX family lipoprotein; KEGG: rso:RSc1146 hypothetical protein YP_002981049.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc1147 hypothetical protein YP_002981050.1 PFAM: cupin; SMART: transcription factor jumonji jmjC domain protein; KEGG: rso:RSc1148 hypothetical protein YP_002981051.1 KEGG: rso:RSc1149 fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein YP_002981052.1 KEGG: rso:RSc1150 hypothetical protein YP_002981053.1 This protein performs the mismatch recognition step during the DNA repair process YP_002981054.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1152 transcription regulator protein YP_002981055.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: rso:RSc1155 methyl-accepting chemotaxis transducer transmembrane protein YP_002981056.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSc1156 methyl-accepting chemotaxis transducer transmembrane protein YP_002981057.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: rso:RSc1157 hypothetical protein YP_002981058.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002981059.1 PFAM: inositol monophosphatase; KEGG: rso:RSc1160 inositol monophosphatase YP_002981060.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc1161 tRNA/rRNA methyltransferase protein YP_002981061.1 TIGRFAM: serine O-acetyltransferase; KEGG: rso:RSc1162 O-acetylserine synthase YP_002981062.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_002981063.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rso:RSc1164 peptidyl-prolyl cis-trans isomerase B YP_002981064.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rso:RSc1165 peptidyl-prolyl cis-trans isomerase A YP_002981065.1 SMART: Tetratricopeptide domain protein; KEGG: rso:RSc1166 signal peptide protein YP_002981066.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002981067.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: rso:RSc1168 hypothetical protein YP_002981068.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002981069.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; protein of unkown function DUF1946 PP-loop ATpase; KEGG: rso:RSc1170 cell cycle protein YP_002981070.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002981071.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002981072.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1173 substrate-binding periplasmic (PBP) ABC transporter protein YP_002981073.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1174 transmembrane ABC transporter protein YP_002981074.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1175 transmembrane ABC transporter protein YP_002981075.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1176 ABC transporter ATP-binding protein YP_002981076.1 PFAM: NLP/P60 protein; KEGG: rso:RSc1177 transmembrane protein YP_002981077.1 PFAM: Patatin; KEGG: rso:RSc1178 lipoprotein transmembrane YP_002981078.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002981079.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSc1180 inner membrane transmembrane protein YP_002981080.1 KEGG: rso:RSc1181 inner membrane transmembrane protein YP_002981081.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002981082.1 KEGG: rso:RSc1183 signal peptide protein YP_002981083.1 PFAM: protein of unknown function DUF980; KEGG: rso:RSc1184 hypothetical protein YP_002981084.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RSc1185 transcription regulator protein YP_002981086.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rso:RSc1186 sigma-54 interacting transcription regulator protein YP_002981087.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002981088.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rso:RSc1188 thioredoxin 1 (redox factor) protein YP_002981089.1 KEGG: rso:RSc1189 hypothetical protein YP_002981090.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc1190 hypothetical protein YP_002981091.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002981092.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1192 hypothetical protein YP_002981093.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: kra:Krad_2675 antibiotic biosynthesis monooxygenase YP_002981094.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002981095.1 PFAM: carbohydrate-selective porin OprB; KEGG: rso:RSc1195 hypothetical protein YP_002981096.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1196 DNA-binding transcriptional regulatory transcription regulator protein YP_002981097.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc1197 hypothetical protein YP_002981098.1 PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc1198 signal peptide protein YP_002981099.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1199 ABC transporter ATP-binding protein YP_002981100.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1200 transmembrane permease ABC transporter protein YP_002981101.1 PFAM: regulatory protein TetR; KEGG: rso:RSc1201 transcription regulator protein YP_002981102.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 flavoprotein NADH-dependent oxidoreductase YP_002981103.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc1203 oxidoreductase protein YP_002981104.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002981105.1 KEGG: rso:RSc1205 hypothetical protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002981106.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: rso:RSc1206 lipoprotein NlpD/LppB-like protein YP_002981107.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_002981108.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein YP_002981109.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_002981110.1 PFAM: protein of unknown function UPF0005; KEGG: rso:RSc1210 hypothetical protein YP_002981111.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002981112.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rso:RSc1212 hypothetical protein YP_002981113.1 KEGG: rso:RSc1213 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_002981114.1 SMART: helix-turn-helix domain protein; KEGG: rso:RSc1214 hypothetical protein YP_002981115.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002981116.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002981117.1 KEGG: rso:RSc1217 hypothetical protein YP_002981118.1 KEGG: rso:RSc1218 lipoprotein transmembrane; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone YP_002981119.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002981120.1 Stimulates the elongation of poly(A) tails YP_002981121.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: rso:RSc1221 hypothetical protein YP_002981122.1 KEGG: rso:RSc1222 hypothetical protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein YP_002981123.1 KEGG: rso:RSc1223 serine protease transmembrane protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein YP_002981124.1 KEGG: rso:RSc1224 hypothetical protein YP_002981125.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002981126.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002981127.1 PFAM: phosphoribosyltransferase; KEGG: rso:RSc1227 nucleotide phosphoribosyltransferase protein YP_002981128.1 KEGG: rso:RSc1228 exoribonuclease RNase R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Cold shock protein YP_002981129.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: rso:RSc1229 tRNA/rRNA methyltransferase protein YP_002981130.1 PFAM: Silent information regulator protein Sir2; KEGG: rso:RSc1230 hypothetical protein YP_002981131.1 KEGG: rso:RSc1231 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase YP_002981132.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002981133.1 PFAM: Fe(II) trafficking protein YggX; KEGG: rso:RSc1235 hypothetical protein YP_002981134.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_002981135.1 KEGG: rso:RSc1251 ATP-dependent RNA helicase protein; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; AAA ATPase YP_002981136.1 PFAM: cytochrome d1 heme region; KEGG: rso:RSc1252 signal peptide protein YP_002981137.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSc1253 lipoprotein signal peptide YP_002981138.1 PFAM: fatty acid hydroxylase; KEGG: rso:RSc1254 hypothetical protein YP_002981139.1 KEGG: rso:RSc1255 hypothetical protein YP_002981140.1 PFAM: molybdopterin binding domain; KEGG: rso:RSc1256 hypothetical protein YP_002981141.1 SMART: rhodanese; KEGG: rso:RSc1257 hypothetical protein YP_002981143.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: cti:RALTA_A1880 glutamine synthetase YP_002981144.1 KEGG: rso:RSc1259 signal peptide protein YP_002981145.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: rso:RSc1260 nitrogen regulation(sensor protein kinase transcription regulator YP_002981146.1 KEGG: rso:RSc1261 nitrogen assimilation regulatory response regulator transcription regulator protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_002981147.1 KEGG: rso:RSc1262 hypothetical protein YP_002981148.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; KEGG: rso:RSc1263 hypothetical protein YP_002981149.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1264 glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide YP_002981150.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1265 sn-glycerol-3-phosphate transmembrane ABC transporter protein YP_002981151.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1266 sn-glycerol-3-phosphate transmembrane ABC transporter protein YP_002981152.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_002981153.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_002981154.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002981155.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002981156.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002981157.1 PFAM: AFG1-family ATPase; KEGG: rso:RSc1272 hypothetical protein YP_002981158.1 KEGG: rso:RSc1273 lipoprotein YP_002981159.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc1274 cation-transporting ATPase lipoprotein transmembrane YP_002981160.1 TIGRFAM: cytochrome Oxidase maturation protein, cbb3-type; PFAM: cytochrome Oxidase maturation protein cbb3-type; KEGG: rso:RSc1275 signal peptide protein YP_002981161.1 CcoN; FixN YP_002981162.1 CcoO; FixO YP_002981163.1 KEGG: rso:RSc1278 signal peptide protein YP_002981164.1 TIGRFAM: cytochrome C oxidase, cbb3-type, subunit III; PFAM: cytochrome C class I; KEGG: rso:RSc1279 cytochrome C oxidase subunit III YP_002981165.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: rso:RSc1280 iron-sulfur 4Fe-4S ferredoxin transmembrane protein YP_002981166.1 KEGG: rso:RSc1281 lipoprotein transmembrane YP_002981167.1 KEGG: rso:RSc1282 hypothetical protein YP_002981168.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: rso:RSc1283 fumarate and nitrate reduction regulatory transcription regulator protein YP_002981169.1 KEGG: rso:RSc1284 hypothetical protein YP_002981170.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rso:RSc1285 hypothetical protein YP_002981171.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: rso:RSc1286 hypothetical protein YP_002981172.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002981173.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002981174.1 protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002981175.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002981176.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002981177.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1292 multidrug resistance B (translocase) transmembrane protein YP_002981178.1 PFAM: secretion protein HlyD family protein; KEGG: rso:RSc1293 multidrug resistance A (translocase) transmembrane protein YP_002981179.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc1294 outer membrane channel lipoprotein YP_002981180.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc1295 transcription regulator protein YP_002981181.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: rso:RSc1296 GTP-binding elongation factor protein YP_002981182.1 SMART: rhodanese; KEGG: pol:Bpro_2041 rhodanese-like YP_002981183.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB1539 LysR family transcriptional regulator YP_002981184.1 PFAM: fatty acid hydroxylase; KEGG: reh:H16_A2293 C-5 sterol desaturase YP_002981185.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002981186.1 KEGG: bvi:Bcep1808_7770 hypothetical protein YP_002981188.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2696 hydrolase YP_002981189.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bxe:Bxe_C1390 LysR family transcriptional regulator YP_002981190.1 KEGG: rso:RS00827 hypothetical protein YP_002981191.1 PFAM: protein of unknown function DUF159; KEGG: mpt:Mpe_A1934 hypothetical protein YP_002981193.1 KEGG: pst:PSPTO_1346 sensory box protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002981194.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: bav:BAV0352 signaling protein YP_002981195.1 KEGG: bbt:BBta_3455 integrase/recombinase YP_002981196.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc1299 tRNA-dihydrouridine synthase A YP_002981197.1 KEGG: rso:RSc1301 hypothetical protein YP_002981198.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RSc1302 hypothetical protein YP_002981199.1 PFAM: cupin; KEGG: bxe:Bxe_C0481 hypothetical protein YP_002981200.1 KEGG: rso:RSc1303 hypothetical protein YP_002981201.1 Represses a number of genes involved in the response to DNA damage YP_002981202.1 PFAM: oxidoreductase FAD-binding protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rso:RSc1305 ferredoxin--NADP reductase YP_002981203.1 PFAM: Asparaginase/glutaminase; KEGG: rso:RSc1306 L-asparaginase II precursor signal peptide protein YP_002981204.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002981205.1 KEGG: rso:RSc1308 hypothetical protein YP_002981206.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002981207.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002981208.1 unwinds double stranded DNA YP_002981209.1 PFAM: protein of unknown function DUF47; KEGG: rso:RSc1312 hypothetical protein YP_002981210.1 PFAM: phosphate transporter; KEGG: rso:RSc1313 inorganic phosphate transporter YP_002981211.1 PFAM: NLP/P60 protein; KEGG: rso:RSc1314 lipoprotein transmembrane YP_002981212.1 KEGG: rso:RSc1315 signal peptide protein YP_002981213.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: rso:RSc1316 hypothetical protein YP_002981214.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1317 bacterioferritin comigratory oxidoreductase protein YP_002981215.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSc1318 hypothetical protein YP_002981216.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc1319 hypothetical protein YP_002981217.1 PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 hypothetical protein YP_002981218.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc1321 polymixin resistance glycosyltransferase transmembrane protein YP_002981219.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1322 aminotransferase protein YP_002981220.1 KEGG: rso:RSc1323 small multidrug resistance transmembrane protein YP_002981221.1 PFAM: glycosyl transferase family 39; KEGG: rso:RSc1324 hypothetical protein YP_002981222.1 PFAM: protein of unknown function DUF498; KEGG: rso:RSc1325 hypothetical protein YP_002981223.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002981224.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002981225.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002981226.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: rso:RSc1329 hypothetical protein YP_002981227.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: rso:RSc1330 molybdopterin biosynthesis MoeA protein YP_002981228.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rso:RSc1331 molybdopterin MPT converting factor subunit 1 YP_002981229.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rso:RSc1332 molybdopterin MPT converting factor subunit 2 YP_002981230.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002981231.1 KEGG: rso:RSc1334 D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_002981232.1 KEGG: rso:RSc1335 ATP-dependent protease; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_002981233.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002981234.1 K02885 large subunit ribosomal protein L19; KEGG: 60S ribosomal protein L19 ; K02885 large subunit ribosomal protein L19e YP_002981235.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1336 sulfate-binding precursor signal peptide protein YP_002981236.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: rso:RSc1337 NADPH-dependent FMN reductase oxidoreductase protein YP_002981237.1 KEGG: cti:RALTA_A1784 alkanesulfonate transport protein; ABC superfamily, substrate binding unit; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_002981238.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc1338 alkanesulfonates binding precursor signal peptide protein YP_002981239.1 catalyzes the release of sulfite from alkanesulfonates YP_002981240.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1340 aliphatic sulfonate ABC transporter transmembrane protein YP_002981241.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1341 aliphatic sulfonate ABC transporter ATP-binding protein YP_002981242.1 PFAM: TOBE domain protein; KEGG: rso:RSc1342 molybdopterin-binding protein YP_002981243.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: rso:RSc1343 hypothetical protein YP_002981244.1 PFAM: protein of unknown function DUF1234; KEGG: rso:RSc1344 hypothetical protein YP_002981245.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1345 sulfate transport ABC transporter protein YP_002981246.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1346 sulfate transport ABC transporter protein YP_002981247.1 KEGG: rso:RSc1347 sulfate transport ATP-binding ABC transporter protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase YP_002981248.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1348 transcriptional regulator CysB-like protein YP_002981249.1 KEGG: rso:RSc1350 hypothetical protein YP_002981250.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc1351 transmembrane sensor histidine kinase transcription regulator protein YP_002981251.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc1352 two-component response regulator transcription regulator protein YP_002981252.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1353 acetolactate synthase 2 catalytic subunit YP_002981253.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002981254.1 PFAM: AIG2 family protein; KEGG: rso:RSc1355 hypothetical protein YP_002981255.1 KEGG: rso:RSc3434 hypothetical protein YP_002981256.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: rso:RSc1358 isocitrate lyase YP_002981257.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reh:H16_B2484 transcriptional regulator, GntR-family YP_002981258.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: reh:H16_B2482 hydantoin racemase YP_002981259.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: vei:Veis_3810 permease for cytosine/purines, uracil, thiamine, allantoin YP_002981260.1 PFAM: UspA domain protein; KEGG: rso:RSc1359 hypothetical protein YP_002981261.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1360 transcription regulator protein YP_002981262.1 KEGG: rso:RSc1362 2-haloalkanoic acid dehalogenase protein; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_002981263.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002981264.1 PFAM: Domain of unknown function DUF1857; KEGG: rso:RSc1364 hypothetical protein YP_002981265.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1365 multidrug resistance-like efflux transmembrane protein YP_002981266.1 PFAM: acyl-coA-binding protein ACBP; KEGG: rso:RSc1366 acyl-CoA-binding protein YP_002981267.1 PFAM: peptidase M22 glycoprotease; KEGG: rso:RSc1367 transmembrane protein YP_002981268.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc1368 acyltransferase protein YP_002981269.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: rso:RSc1369 DNA polymerase-related protein, bacteriophage-type YP_002981270.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1370 hypothetical protein YP_002981271.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002981272.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002981273.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_002981274.1 PFAM: protein of unknown function DUF523; KEGG: rso:RSc1374 hypothetical protein YP_002981275.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc1375 racemase transmembrane protein YP_002981276.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1376 ABC transporter ATP-binding protein YP_002981277.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: rso:RSc1377 hypothetical protein YP_002981278.1 PFAM: peptidase T2 asparaginase 2; KEGG: rso:RSc1378 L-asparaginase precursor protein YP_002981279.1 KEGG: rso:RSc1379 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase YP_002981280.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1380 substrate-binding periplasmic (PBP) ABC transporter protein YP_002981281.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1381 transmembrane ABC transporter protein YP_002981282.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1382 transmembrane ABC transporter protein YP_002981283.1 PFAM: peptidase S58 DmpA; KEGG: rso:RSc1383 D-aminopeptidase protein YP_002981284.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: rso:RSc1384 hypothetical protein YP_002981285.1 KEGG: rso:RSc1385 lipoprotein transmembrane YP_002981286.1 involved in methylation of ribosomal protein L3 YP_002981287.1 PFAM: adenylate cyclase; KEGG: rso:RSc1389 hypothetical protein YP_002981288.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002981289.1 PFAM: arsenate reductase and related; KEGG: rso:RSc1391 hypothetical protein YP_002981290.1 KEGG: rso:RSc1392 transmembrane protein YP_002981291.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002981292.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_002981293.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1395 hypothetical protein YP_002981294.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1396 transmembrane protein YP_002981295.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: reu:Reut_A1888 chromosome segregation protein SMC YP_002981296.1 SMART: ZipA FtsZ-binding region; KEGG: rso:RSc1397 hypothetical protein YP_002981297.1 KEGG: rso:RSc1398 DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1 YP_002981298.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002981299.1 KEGG: rso:RSc1400 transmembrane protein YP_002981300.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: rso:RSc1401 hypothetical protein YP_002981301.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002981302.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002981303.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002981304.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002981305.1 Catalyzes the phosphorylation of UMP to UDP YP_002981306.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002981307.1 KEGG: rso:RSc1408 undecaprenyl pyrophosphate synthetase protein; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002981308.1 PFAM: phosphatidate cytidylyltransferase; KEGG: rso:RSc1409 phosphatidate cytidylyltransferase transmembrane protein YP_002981309.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002981310.1 KEGG: rso:RSc1411 hypothetical protein; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_002981311.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rso:RSc1412 outer membrane signal peptide protein YP_002981312.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: rso:RSc1413 hypothetical protein YP_002981313.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002981314.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002981315.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002981316.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_002981317.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002981318.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc1419 tRNA/rRNA methyltransferase protein YP_002981319.1 KEGG: bcj:BCAM2201 hypothetical protein YP_002981320.1 PFAM: short-chain dehydrogenase/reductase SDR; alpha/beta hydrolase fold; KR domain protein; KEGG: bur:Bcep18194_B0709 short chain dehydrogenase YP_002981321.1 KEGG: bch:Bcen2424_4970 metal-dependent hydrolase YP_002981322.1 PFAM: protein of unknown function DUF299; KEGG: rso:RSc1420 hypothetical protein YP_002981323.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002981324.1 PFAM: protein of unknown function DUF107; KEGG: rso:RSc1422 hypothetical protein YP_002981325.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: rso:RSc1423 transmembrane protein YP_002981326.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002981327.1 PFAM: cyclase/dehydrase; KEGG: rso:RSc1425 hypothetical protein YP_002981328.1 PFAM: protein of unknown function UPF0125; KEGG: rso:RSc1426 hypothetical protein YP_002981329.1 KEGG: rso:RSc1427 hypothetical protein YP_002981330.1 KEGG: rso:RSc1428 hypothetical protein YP_002981331.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002981332.1 KEGG: rso:RSc1430 hypothetical protein YP_002981333.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002981334.1 KEGG: rso:RSc2704 hypothetical protein YP_002981335.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: reh:H16_B1929 cold shock protein, DNA-binding YP_002981336.1 KEGG: reu:Reut_A3203 hypothetical protein YP_002981337.1 KEGG: bpy:Bphyt_4115 hypothetical protein YP_002981338.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bac:BamMC406_1895 protein of unknown function DUF899 thioredoxin family protein YP_002981339.1 KEGG: reh:H16_B0829 hypothetical protein YP_002981340.1 PFAM: sodium:dicarboxylate symporter; KEGG: eca:ECA2410 sodium:dicarboxylate symporter YP_002981341.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1440 transcriptional regulatory DNA-binding transcription regulator protein YP_002981342.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: rso:RSc1441 protocatechuate 3,4-dioxygenase subunit beta oxidoreductase protein YP_002981343.1 KEGG: rso:RSc1442 protocatechuate 3,4-dioxygenase alpha chain oxidoreductase protein; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase YP_002981344.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: rso:RSc1443 ligase protein YP_002981345.1 KEGG: rso:RSc1444 hypothetical protein YP_002981346.1 PFAM: beta-lactamase domain protein; KEGG: psb:Psyr_2218 beta-lactamase-like YP_002981347.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: yen:YE3335 LysR family transcriptional regulator YP_002981348.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1445 hypothetical protein YP_002981349.1 KEGG: rso:RSc1448 hypothetical protein YP_002981350.1 PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0744 2-hydroxychromene-2-carboxylate isomerase family protein YP_002981351.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A0745 LysR family transcriptional regulator YP_002981352.1 PFAM: major facilitator superfamily MFS_1; KEGG: bmj:BMULJ_02164 permease of the major facilitator superfamily YP_002981354.1 KEGG: rso:RSc1449 hypothetical protein YP_002981355.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rso:RSc1450 6-pyruvoyl tetrahydrobiopterin synthase protein YP_002981356.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rso:RSc1451 hydrolase protein YP_002981357.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_002981358.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1453 ABC transporter ATP-binding protein YP_002981359.1 KEGG: met:M446_1268 hypothetical protein YP_002981360.1 KEGG: reu:Reut_A1290 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_002981361.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_1795 transcriptional regulator, LysR family YP_002981362.1 KEGG: rso:RSc1455 hypothetical protein YP_002981363.1 PFAM: aldehyde Dehydrogenase; KEGG: rso:RSc1456 betaine aldehyde dehydrogenase (BADH) oxidoreductase protein YP_002981364.1 PFAM: protein of unknown function DUF1289; KEGG: rso:RSc1457 hypothetical protein YP_002981365.1 PFAM: glycoside hydrolase 15-related; KEGG: rso:RSc1458 hypothetical protein YP_002981366.1 KEGG: rso:RSc1459 hypothetical protein YP_002981367.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002981368.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSc1460 methyl-accepting chemotaxis transducer transmembrane protein YP_002981369.1 KEGG: reu:Reut_B5305 hypothetical protein YP_002981370.1 PFAM: MgtC/SapB transporter; KEGG: rso:RSc1461 transporter transmembrane protein YP_002981371.1 PFAM: Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: rso:RSc1462 signal peptide protein YP_002981372.1 PFAM: protein of unknown function DUF182; KEGG: rso:RSc1463 hypothetical protein YP_002981373.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rso:RSc1464 hypothetical protein YP_002981374.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: rso:RSc1465 hypothetical protein YP_002981375.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc1466 hypothetical protein YP_002981376.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: rso:RSc1467 oxidoreductase protein YP_002981377.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: rso:RSc1468 oxidoreductase protein YP_002981378.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: rso:RSc1469 dehydrogenase oxidoreductase protein YP_002981379.1 KEGG: rso:RSc1470 hypothetical protein YP_002981380.1 PFAM: CreA family protein; KEGG: rso:RSc1471 CreA signal peptide protein YP_002981381.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1472 transcription regulator protein YP_002981382.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1473 multidrug resistance-like transmembrane protein YP_002981383.1 PFAM: glycosyl transferase family 51; KEGG: rso:RSc1476 hypothetical protein YP_002981384.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bvi:Bcep1808_4117 LysR family transcriptional regulator YP_002981385.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bmj:BMULJ_03554 muconate cycloisomerase YP_002981386.1 KEGG: bam:Bamb_6586 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase YP_002981387.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bmj:BMULJ_05288 catechol 1,2-dioxygenase YP_002981388.1 PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bur:Bcep18194_C7046 ring hydroxylating dioxygenase, alpha subunit YP_002981389.1 KEGG: bch:Bcen2424_6525 2-chlorobenzoate 1,2-dioxygenase; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit YP_002981390.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding protein; ferredoxin; FAD-binding 9 siderophore-interacting domain protein; KEGG: bmj:BMULJ_05285 benzoate 1,2-dioxygenase electron transfer component YP_002981391.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_002981392.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: reh:H16_B1919 MFS transporter, AAHS family YP_002981394.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002981395.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_002981396.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002981397.1 KEGG: rso:RSc1480 lipoprotein transmembrane YP_002981398.1 KEGG: rso:RSc1481 hypothetical protein YP_002981399.1 PFAM: protein of unknown function DUF1653; KEGG: rso:RSc1482 hypothetical protein YP_002981400.1 KEGG: rso:RSc1483 hypothetical protein YP_002981401.1 PFAM: pyruvate carboxyltransferase; KEGG: aav:Aave_1652 hydroxymethylglutaryl-CoA lyase YP_002981402.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_5234 LysR family transcriptional regulator YP_002981403.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A1234 predicted acyl-CoA transferase/carnitine dehydratase YP_002981404.1 KEGG: ppf:Pput_5022 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_002981405.1 KEGG: cti:RALTA_A0673 3-isopropylmalate isomerase, subunit with LeuC; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_002981406.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: met:M446_5703 major facilitator transporter YP_002981407.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2563 major facilitator transporter YP_002981408.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bac:BamMC406_3471 AraC family transcriptional regulator YP_002981409.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_4505 transcriptional regulator, LysR family YP_002981410.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rme:Rmet_4506 major facilitator superfamily MFS_1 YP_002981411.1 KEGG: rme:Rmet_4507 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002981412.1 PFAM: amidase; KEGG: pap:PSPA7_4912 amidase YP_002981413.1 PFAM: LysR substrate-binding; KEGG: mex:Mext_1680 LysR substrate-binding YP_002981414.1 PFAM: metallophosphoesterase; KEGG: rso:RSc1795 hypothetical protein YP_002981415.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rso:RSc1794 ABC transporter ATP-binding protein YP_002981416.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1793 ABC transporter permease YP_002981417.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1792 transport system permease transmembrane ABC transporter protein YP_002981418.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1791 solute-binding periplasmic (PBP) ABC transporter protein YP_002981419.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rso:RSc1790 transcription regulator protein YP_002981420.1 PFAM: protein of unknown function DUF323; KEGG: rso:RSc1789 hypothetical protein YP_002981421.1 SMART: ankyrin; KEGG: rso:RSc1788 aankyrin repeat-containing protein YP_002981422.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rso:RSc1787 hypothetical protein YP_002981423.1 PFAM: type IV pilus assembly PilZ; KEGG: rso:RSc1786 type 4 fimbrial biogenesis protein YP_002981424.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002981425.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002981426.1 PFAM: aminodeoxychorismate lyase; KEGG: rso:RSc1783 hypothetical protein YP_002981427.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rso:RSc1782 hypothetical protein YP_002981428.1 KEGG: rso:RSc1781 hypothetical protein YP_002981429.1 PFAM: protein of unknown function DUF833; KEGG: rso:RSc1780 signal peptide protein YP_002981430.1 PFAM: fatty acid hydroxylase; KEGG: reu:Reut_A2772 sterol desaturase YP_002981431.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_A2771 LysR family transcriptional regulator YP_002981432.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc1774 hypothetical protein YP_002981433.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc1773 thioesterase protein YP_002981434.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc1772 esterase/lipase protein YP_002981435.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rso:RSc1771 NAD-dependent 4-hydroxybutyrate dehydrogenase oxidoreductase protein YP_002981436.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1770 hydrolase protein YP_002981437.1 probable dehydrogenase YP_002981438.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc1768 glutathione S-transferase-related protein YP_002981439.1 PFAM: class II aldolase/adducin family protein; KEGG: rme:Rmet_1848 hypothetical protein YP_002981440.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSc1766 NADP-dependent oxidoreductase oxidoreductase protein YP_002981441.1 PFAM: beta-lactamase; KEGG: rso:RSc1765 6-aminohexanoate-dimer hydrolase lipoprotein YP_002981442.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc1764 hypothetical protein YP_002981443.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002981444.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc1762 acyl-CoA dehydrogenase oxidoreductase protein YP_002981445.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002981446.1 PFAM: isochorismatase hydrolase; KEGG: rso:RSc1760 bifunctional pyrazinamidase/nicotinamidase hydrolase YP_002981447.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: rso:RSc1759 trifunctonal enoyl-CoA hydratase/delta3-cis-delta2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase YP_002981448.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1758 lysine-specific permease transmembrane protein YP_002981449.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1757 lysine-specific permease transmembrane protein YP_002981450.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1754 amino-acid ATP-binding ABC transporter protein YP_002981451.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1753 amino-acid ATP-binding ABC transporter protein YP_002981452.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1752 amino acid ABC transporter permease YP_002981453.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1751 amino acid transmembrane transmembrane protein YP_002981454.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc1750 Leu/Ile/Val-binding precursor signal peptide protein YP_002981455.1 activates fatty acids by binding to coenzyme A YP_002981456.1 PFAM: protein of unknown function UPF0061; KEGG: rso:RSc1748 hypothetical protein YP_002981457.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_002981458.1 Involved in cell division; probably involved in intracellular septation YP_002981459.1 PFAM: BolA family protein; KEGG: rso:RSc1745 hypothetical protein YP_002981460.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc1744 isomerase rotamase signal peptide protein YP_002981461.1 PFAM: protein of unknown function DUF534; KEGG: rso:RSc1740 signal peptide protein YP_002981462.1 PFAM: inner-membrane translocator; KEGG: rso:RSc1739 transmembrane ABC transporter protein YP_002981463.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1738 ABC transporter ATP-binding protein YP_002981464.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: reh:H16_A2226 two domain protein VgrG YP_002981465.1 PFAM: YiaAB two helix domain protein; KEGG: rso:RSc0141 hypothetical protein YP_002981466.1 KEGG: reh:H16_B1133 hypothetical protein YP_002981467.1 KEGG: reh:H16_A2223 hypothetical protein YP_002981468.1 KEGG: reh:H16_A2223 hypothetical protein YP_002981469.1 KEGG: reh:H16_A2223 hypothetical protein YP_002981470.1 KEGG: reh:H16_A2223 hypothetical protein YP_002981471.1 KEGG: reh:H16_B1136 hypothetical protein YP_002981472.1 PFAM: PAAR repeat-containing protein; KEGG: bam:Bamb_3483 PaaR repeat-containing protein YP_002981473.1 TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: bph:Bphy_7017 DotU family type IV/VI secretion system protein YP_002981474.1 PFAM: heat shock protein DnaJ domain protein; KEGG: bur:Bcep18194_B3003 hypothetical protein YP_002981475.1 PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc1735 two-component transmembrane sensor kinase transcription regulator protein YP_002981476.1 KEGG: rso:RSc1734 ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase YP_002981477.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1733 lipoprotein signal peptide YP_002981478.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1732 transport system permease transmembrane protein YP_002981479.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1731 transmembrane ABC transporter protein YP_002981480.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc1730 dehydrogenase/reductase oxidoreductase protein YP_002981481.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1729 transcription regulator protein YP_002981482.1 PFAM: beta-lactamase; KEGG: azc:AZC_0974 beta-lactamase class C YP_002981483.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002981484.1 KEGG: rso:RSc1721 hypothetical protein YP_002981485.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: rso:RSc1720 hypothetical protein YP_002981486.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002981487.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc1718 ABC transporter ATP-binding protein YP_002981488.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rso:RSc1717 esterase signal peptide protein YP_002981489.1 KEGG: rso:RSc1716 signal peptidase I (SPase I) protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002981490.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc1715 peptidyl-prolyl cis-trans isomerase transmembrane protein YP_002981491.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: rso:RSc1714 DNA-binding protein HU-beta YP_002981492.1 KEGG: rso:RSc1713 ATP-dependent protease La protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase YP_002981493.1 binds and unfolds substrates as part of the ClpXP protease YP_002981494.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002981495.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002981496.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_002981497.1 KEGG: rso:RSc1708 hypothetical protein YP_002981498.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: pap:PSPA7_1545 MFS family transporter YP_002981499.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A3005 L-carnitine dehydratase/bile acid-inducible protein F YP_002981500.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_A3006 acyl-CoA dehydrogenase YP_002981501.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bxe:Bxe_A3007 LysR family transcriptional regulator YP_002981502.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2792 acetyltransferase YP_002981503.1 TIGRFAM: cytochrome O ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: rme:Rmet_5611 cytochrome C oxidase subunit IV YP_002981504.1 TIGRFAM: cytochrome O ubiquinol oxidase, subunit III; PFAM: cytochrome C oxidase subunit III; KEGG: rme:Rmet_5610 cytochrome C oxidase, subunit III YP_002981505.1 KEGG: rme:Rmet_5609 cytochrome C oxidase, subunit I; TIGRFAM: cytochrome O ubiquinol oxidase, subunit I; PFAM: cytochrome C oxidase subunit I YP_002981506.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome C oxidase subunit II; KEGG: rme:Rmet_5608 ubiquinol oxidase, subunit II YP_002981507.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_5607 major facilitator superfamily MFS_1 YP_002981508.1 PFAM: CsbD family protein; KEGG: bph:Bphy_5331 CsbD family protein YP_002981509.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: har:HEAR1463 maleate cis-trans isomerase protein YP_002981510.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: hya:HY04AAS1_1460 major facilitator superfamily MFS_1 YP_002981511.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_A1233 transcriptional regulator, LysR-family YP_002981513.1 KEGG: rso:RS01728 hypothetical protein YP_002981514.1 PFAM: ApbE family lipoprotein; KEGG: bbt:BBta_2627 thiamine biosynthesis lipoprotein ApbE transmembrane YP_002981515.1 PFAM: FMN-binding domain protein; KEGG: rso:RS01729 signal peptide protein YP_002981516.1 PFAM: phosphate-selective porin O and P; KEGG: rso:RS01730 signal peptide protein YP_002981517.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: rso:RS01731 lipoprotein YP_002981519.1 PFAM: acriflavin resistance protein; KEGG: rso:RSc1654 transmembrane drug efflux protein YP_002981520.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc1653 transport/efflux transmembrane protein YP_002981521.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: rso:RSc1652 phytoene synthase protein YP_002981522.1 PFAM: protein of unknown function DUF1501; KEGG: rso:RSc1651 hypothetical protein YP_002981523.1 PFAM: protein of unknown function DUF1800; KEGG: rso:RSc1650 signal peptide protein YP_002981524.1 KEGG: rso:RSc1649 transmembrane protein YP_002981525.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_002981526.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rso:RSc1647 oxidative stress resistance two-component transmembrane sensor histidine kinase transcription regulator protein YP_002981527.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1646 alkyl hydroperoxide reductase (subunit C) oxidoreductase protein YP_002981528.1 PFAM: carboxymuconolactone decarboxylase; KEGG: rme:Rmet_1951 alkylhydroperoxidase AhpD core YP_002981529.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002981530.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002981531.1 KEGG: rso:RSc1642 transcription-repair coupling factor protein; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; TRCF domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases ; helicase domain protein YP_002981532.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002981533.1 KEGG: rso:RSc1640 phosphoserine phosphatase protein; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3 YP_002981534.1 PFAM: protein of unknown function DUF1016; KEGG: vei:Veis_1183 protein of unknown function DUF1016 YP_002981535.1 catalyzes the formation of L-homocysteine from cystathionine YP_002981536.1 KEGG: rso:RSc1638 signal peptide protein YP_002981537.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_002981538.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_002981539.1 PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc1635 hypothetical protein YP_002981540.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: rso:RSc1634 hypothetical protein YP_002981541.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_002981543.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002981544.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rso:RSc1631 poly-beta-hydroxybutyrate polymerase transmembrane protein YP_002981545.1 KEGG: rso:RSc1630 hypothetical protein YP_002981546.1 PFAM: protein of unknown function DUF152; KEGG: rso:RSc1629 hypothetical protein YP_002981547.1 KEGG: rso:RSc1628 ribosomal large subunit pseudouridine synthase D protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002981548.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: rso:RSc1627 hypothetical protein YP_002981549.1 SMART: helicase c2; KEGG: rso:RSc1626 ATP-dependent DNA helicase-related protein YP_002981550.1 KEGG: rso:RSc1625 hypothetical protein YP_002981551.1 KEGG: rso:RSc1624 hypothetical protein YP_002981552.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: rso:RSc1623 transcription accessory protein YP_002981553.1 KEGG: rso:RSc1622 hypothetical protein YP_002981554.1 PFAM: potassium transporter; KEGG: rso:RSc1621 potassium uptake transmembrane protein YP_002981555.1 KEGG: rso:RSc1620 hypothetical protein YP_002981556.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002981557.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc1618 hypothetical protein YP_002981558.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_002981559.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_002981560.1 PFAM: TM2 domain containing protein; KEGG: rso:RSc1614 hypothetical protein YP_002981561.1 KEGG: rso:RSc1613 hypothetical protein YP_002981562.1 PFAM: protein of unknown function DUF162; KEGG: rso:RSc1612 iron-sulfur binding protein YP_002981563.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc1611 hypothetical protein YP_002981564.1 PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: rso:RSc1610 transcription regulator protein YP_002981565.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rso:RSc1609 D-alanyl-D-alanine-endopeptidase (penicillin-binding protein) YP_002981566.1 PFAM: nitroreductase; KEGG: rso:RSc1608 oxidoreductase protein YP_002981567.1 PFAM: thioesterase superfamily protein; KEGG: bvi:Bcep1808_1377 thioesterase superfamily protein YP_002981568.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: rso:RSc1607 hypothetical protein YP_002981569.1 PFAM: histone deacetylase superfamily; KEGG: rso:RSc1606 hypothetical protein YP_002981570.1 TIGRFAM: phasin family protein; KEGG: rso:RSc1605 hypothetical protein YP_002981571.1 KEGG: rso:RSc1604 hypothetical protein YP_002981572.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; KEGG: rso:RSc1603 dihydrolipoamide dehydrogenase YP_002981573.1 PFAM: 20S proteasome A and B subunits; KEGG: rso:RSc1602 hypothetical protein YP_002981574.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: rso:RSc1601 dihydrolipoamide acetyltransferase YP_002981575.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_002981576.1 KEGG: rso:RSc1598 two-component transmembrane sensor histidine kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein YP_002981577.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rso:RSc1597 response regulator transcription regulator protein YP_002981578.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002981579.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: rso:RSc1595 oligopeptidase A YP_002981580.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1593 exodeoxyribonuclease III protein YP_002981581.1 KEGG: rso:RSc1592 transcription regulator protein; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_002981582.1 KEGG: rso:RSc1591 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase oxidoreductase protein; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_002981583.1 KEGG: bur:Bcep18194_B1778 4-oxalocrotonate decarboxylase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_002981584.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bur:Bcep18194_B1779 5-carboxymethyl-2-hydroxymuconate isomerase YP_002981585.1 KEGG: bcm:Bcenmc03_3283 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B YP_002981586.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde Dehydrogenase; KEGG: bur:Bcep18194_B1781 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002981587.1 KEGG: bur:Bcep18194_B1782 5-carboxymethyl-2-hydroxymuconate delta-isomerase; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase YP_002981588.1 KEGG: bpd:BURPS668_A1023 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase YP_002981589.1 PFAM: protein of unknown function DUF1488; KEGG: rso:RSc1590 hypothetical protein YP_002981590.1 PFAM: amino acid permease-associated region; KEGG: rso:RSc1588 amino-acid transporter transmembrane protein YP_002981591.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002981592.1 KEGG: rso:RSc1586 lipoprotein YP_002981593.1 PFAM: aldose 1-epimerase; KEGG: rso:RSc1585 hypothetical protein YP_002981594.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: smt:Smal_1372 alkylhydroperoxidase like protein, AhpD family YP_002981595.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_5450 transcriptional regulator, AraC family YP_002981596.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rso:RSc1584 transcription regulator protein YP_002981597.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002981598.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002981599.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002981600.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002981601.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: rso:RSc1579 50S ribosomal protein L35 YP_002981602.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002981603.1 KEGG: rso:RSc1576 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein YP_002981604.1 PFAM: endoribonuclease L-PSP; KEGG: rso:RSc1575 hypothetical protein YP_002981605.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1574 hydrolase protein YP_002981606.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_002981607.1 KEGG: dac:Daci_4265 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_002981608.1 KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_002981609.1 KEGG: rso:RSc1569 transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: regulatory protein LuxR; PAS domain containing protein YP_002981610.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rso:RSc1568 short chain dehydrogenase YP_002981611.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc1567 electron transfer flavoprotein-ubiquinone oxidoreductase YP_002981612.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002981613.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc1565 FKBP-type peptidyl-prolyl cis-trans isomerase signal peptide protein YP_002981614.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: rso:RSc1564 hypothetical protein YP_002981615.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rso:RSc1563 hypothetical protein YP_002981616.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_002981617.1 PFAM: alpha/beta hydrolase fold; Thioesterase; KEGG: rso:RSc1561 hydrolase protein YP_002981618.1 KEGG: rso:RSc1560 transmembrane protein YP_002981619.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: rso:RSc1559 ribonuclease BN transmembrane protein YP_002981620.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: rso:RSc1558 TRP repressor binding protein YP_002981621.1 KEGG: rso:RSc1557 hypothetical protein YP_002981622.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc1556 oxidoreductase protein YP_002981623.1 KEGG: rso:RSc1555 hypothetical protein YP_002981624.1 KEGG: hypothetical protein YP_002981625.1 KEGG: dps:DP2557 hypothetical protein YP_002981626.1 KEGG: pfl:PFL_5241 hypothetical protein YP_002981627.1 PFAM: OmpA/MotB domain protein; KEGG: bma:BMAA1914 hypothetical protein YP_002981628.1 TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: cti:RALTA_A0621 replication related protein YP_002981629.1 TIGRFAM: type VI secretion system OmpA/MotB family protein; type IV / VI secretion system protein, DotU family; PFAM: OmpA/MotB domain protein; KEGG: reh:H16_A0662 outer membrane protein YP_002981630.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: reh:H16_A0661 bacterial protein of unknown function YP_002981631.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: reh:H16_A0660 hypothetical protein YP_002981632.1 PFAM: PAAR repeat-containing protein; KEGG: bph:Bphy_7018 PaaR repeat-containing protein YP_002981633.1 KEGG: bpt:Bpet2500 hypothetical protein YP_002981634.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: cti:RALTA_A0611 replication/virulence associated protein; Vgr-related YP_002981635.1 KEGG: dar:Daro_0088 hypothetical protein YP_002981636.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: reh:H16_A0654 hemolysin-coregulated protein YP_002981637.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: cti:RALTA_A0609 replication/virulence associated protein; DUF877 YP_002981638.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: cti:RALTA_A0608 replication/virulence associated protein; DUF770 YP_002981639.1 KEGG: reh:H16_A0651 ATP-dependent protease Clp, ATPase subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_002981640.1 KEGG: reh:H16_A0650 hypothetical protein YP_002981641.1 PFAM: virulence protein SciE type; KEGG: reh:H16_A0649 ImpE family protein YP_002981642.1 KEGG: cti:RALTA_A0612 conserved hypothetical protein; type V secretory pathway, adhesin AidA; ribonucleases G and E YP_002981643.1 KEGG: reh:H16_A0659 hypothetical protein YP_002981644.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: reh:H16_A0648 hypothetical protein YP_002981645.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: cti:RALTA_A0604 replication/virulence associated protein; DUF879 YP_002981646.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: reh:H16_A0646 hypothetical protein YP_002981647.1 TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: reh:H16_A0645 uncharacterized protein conserved in bacteria,ImpA-related YP_002981648.1 KEGG: bvi:Bcep1808_6345 diguanylate cyclase YP_002981649.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: bmj:BMULJ_01148 Lrp/AsnC family transcriptional regulator YP_002981650.1 PFAM: aminotransferase class V; protein of unknown function DUF442; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bam:Bamb_5203 aminotransferase, class V YP_002981651.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RS05577 transcription regulator protein YP_002981652.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_002981653.1 KEGG: cti:RALTA_A2660 lipoprotein YP_002981654.1 PFAM: aldo/keto reductase; KEGG: reu:Reut_A2881 aldo/keto reductase YP_002981655.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rme:Rmet_4091 NADH:flavin oxidoreductase/NADH oxidase YP_002981656.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rso:RS02983 transcription regulator protein YP_002981657.1 KEGG: reh:H16_B2022 hypothetical protein YP_002981658.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein LysE/YggA YP_002981659.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_002981660.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc1544 hypothetical protein YP_002981661.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rso:RSc1543 transcription regulator protein YP_002981662.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc1541 hypothetical protein YP_002981663.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: phosphoglycerate mutase; KEGG: rso:RSc1539 hydrolase protein YP_002981664.1 KEGG: rso:RSc1538 hypothetical protein YP_002981665.1 PFAM: Ppx/GppA phosphatase; KEGG: rso:RSc1537 exopolyphosphatase protein YP_002981666.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002981667.1 KEGG: rso:RSc1535 phosphate regulon two-component sensor kinase transcription regulator protein; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002981668.1 KEGG: rso:RSc1534 phosphate regulon two-component response regulator transcription regulator protein; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_002981669.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rso:RSc1533 phosphate transporter PhoU YP_002981670.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002981671.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002981672.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002981673.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc1529 phosphate ABC transporter phosphate-binding protein YP_002981674.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002981675.1 KEGG: rso:RSc1527 7,8-dihydropteroate synthase protein; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002981676.1 KEGG: rso:RSc1526 ATP-dependent zinc metallopeptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002981677.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rso:RSc1525 ribosomal RNA large subunit methyltransferase J YP_002981678.1 PFAM: protein of unknown function UPF0044; KEGG: rso:RSc1524 hypothetical protein YP_002981679.1 KEGG: rso:RSc1523 hypothetical protein YP_002981680.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002981681.1 four carb-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; carb is responsible for the amidotransferase activity YP_002981682.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc1520 leucine export protein LeuE YP_002981683.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002981684.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent YP_002981685.1 PFAM: MLTD_N domain protein; peptidoglycan-binding LysM; Lytic transglycosylase catalytic; SMART: peptidoglycan-binding LysM; KEGG: rso:RSc1516 membrane-bound lytic murein transglycosylase-like lipoprotein YP_002981686.1 KEGG: rso:RSc1515 hydroxyacylglutathione hydrolase protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_002981687.1 PFAM: Methyltransferase type 11; KEGG: rso:RSc1514 hypothetical protein YP_002981688.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002981689.1 KEGG: cvi:CV_1202 ribonuclease precursor YP_002981690.1 PFAM: glycoside hydrolase family 24; KEGG: bac:BamMC406_4784 lysozyme YP_002981691.1 KEGG: bac:BamMC406_4783 hypothetical protein YP_002981692.1 KEGG: bac:BamMC406_4782 hypothetical protein YP_002981693.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bac:BamMC406_4781 LuxR family transcriptional regulator YP_002981694.1 PFAM: protein of unknown function DUF1488; KEGG: rso:RSc1512 hypothetical protein YP_002981695.1 PFAM: SpoVR family protein; KEGG: rme:Rmet_3906 hypothetical protein YP_002981696.1 PFAM: protein of unknown function DUF444; KEGG: reu:Reut_B3554 hypothetical protein YP_002981697.1 PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: cti:RALTA_B0548 conserved hypothetical protein, PrkA serine protein kinase domain YP_002981698.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_A1704 transcriptional regulator, LysR-family YP_002981699.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; carbon monoxide dehydrogenase subunit G; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; Activator of Hsp90 ATPase 1 family protein; KEGG: reu:Reut_C5890 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_002981700.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: reh:H16_A1702 FAD binding domain in molybdopterin dehydrogenase YP_002981701.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: reh:H16_A1701 aerobic-type carbon monoxide dehydrogenase homolog, 2Fe-2S iron-sulfur subunit YP_002981702.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_C5887 AMP-dependent synthetase and ligase YP_002981703.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_C5886 enoyl-CoA hydratase/isomerase YP_002981705.1 3'-5' exonuclease of DNA polymerase III YP_002981706.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002981707.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc1874 hypothetical protein YP_002981708.1 KEGG: rso:RSc1875 hypothetical protein YP_002981709.1 KEGG: rso:RSc1876 hypothetical protein YP_002981710.1 PFAM: aspartyl/Asparaginyl beta-hydroxylase; KEGG: rso:RSc1877 aspartyl/asparaginyl beta-hydroxylase transmembrane protein YP_002981711.1 KEGG: rso:RSc1878 lipoprotein YP_002981712.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc1880 transcription regulator protein YP_002981713.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc1881 transmembrane oxidoreductase protein YP_002981714.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1882 peptide ABC transporter transmembrane protein YP_002981715.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1883 peptide ABC transporter transmembrane protein YP_002981716.1 KEGG: rso:RSc1884 oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase YP_002981717.1 KEGG: rso:RSc1885 oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase YP_002981718.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc1886 periplasmic dipeptide transport protein precursor YP_002981719.1 PFAM: BAAT/Acyl-CoA thioester hydrolase; acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 acyl coenzyme A thioester hydrolase protein YP_002981720.1 TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rso:RSc1888 hypothetical protein YP_002981721.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cti:RALTA_B0461 transmembrane isoquinoline 1-oxidoreductase (beta subunit) oxidoreductase protein YP_002981722.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: rso:RSc1890 isoquinoline 1-oxidoreductase alpha subunit YP_002981723.1 KEGG: rso:RSc1891 hypothetical protein YP_002981724.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: rha:RHA1_ro04896 hypothetical protein YP_002981725.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bpy:Bphyt_0409 methyl-accepting chemotaxis sensory transducer YP_002981726.1 KEGG: bac:BamMC406_4780 hypothetical protein YP_002981727.1 KEGG: cti:RALTA_A2224 hypothetical protein YP_002981728.1 PFAM: Na+/solute symporter; KEGG: rso:RSc1951 solute:Na+ symporter permease transmembrane protein YP_002981729.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002981730.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1953 hypothetical protein YP_002981731.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc1954 hypothetical protein YP_002981732.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: rso:RSc1955 fumarate hydratase protein YP_002981733.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002981734.1 PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSc1957 glutamate symport transmembrane protein YP_002981735.1 KEGG: rso:RSc1958 hypothetical protein YP_002981736.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002981737.1 KEGG: rso:RS02295 hypothetical protein YP_002981738.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rso:RSp0965 ribonucleotide reductase activating transmembrane protein YP_002981739.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rso:RS02297 transcription regulator protein YP_002981740.1 PFAM: DGC domain protein; KEGG: rso:RS02298 lipoprotein YP_002981741.1 KEGG: rso:RS02299 hypothetical protein YP_002981742.1 PFAM: peptidase U32; KEGG: rso:RS02300 hypothetical protein YP_002981743.1 PFAM: peptidase U32; KEGG: rso:RS02301 protease protein YP_002981744.1 KEGG: rso:RS02303 hypothetical protein YP_002981745.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc1961 ATPase protein YP_002981746.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rso:RSc1963 TonB transmembrane protein YP_002981747.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc1964 biopolymer transport transmembrane protein YP_002981748.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc1965 biopolymer transport transmembrane protein YP_002981749.1 KEGG: rso:RSc1966 hemin uptake protein YP_002981750.1 PFAM: protein of unknown function DUF336; KEGG: rso:RSc1967 GlcG protein YP_002981751.1 KEGG: reh:H16_A2537 hypothetical membrane associated protein YP_002981753.1 KEGG: rso:RSc1969 hypothetical protein YP_002981754.1 KEGG: rso:RSc1970 hypothetical protein YP_002981755.1 TIGRFAM: phasin family protein; KEGG: rso:RSc1972 phasin protein YP_002981756.1 PFAM: PRC-barrel domain protein; KEGG: dac:Daci_4398 PRC-barrel domain-containing protein YP_002981757.1 KEGG: rso:RSc1973 osmotically inducible lipoprotein B1 transmembrane YP_002981758.1 involved in the export of lipooligosaccharides during nodulation YP_002981759.1 TIGRFAM: ABC transporter, NodJ family; PFAM: ABC transporter; KEGG: rso:RSc1975 transmembrane permease ABC transporter protein YP_002981760.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002981761.1 PFAM: Colicin V production protein; KEGG: rso:RSc1977 colicin V production transmembrane protein YP_002981762.1 PFAM: sporulation protein; KEGG: rso:RSc1978 hypothetical protein YP_002981763.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: rso:RSc1979 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_002981764.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002981765.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002981766.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rso:RSc1982 DNA-methyltransferase (DNA-modification methylase) protein YP_002981767.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002981768.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002981769.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002981770.1 KEGG: rso:RSc1986 hypothetical protein YP_002981771.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002981773.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002981774.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002981775.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002981776.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_002981777.1 PFAM: protein of unknown function DUF339; KEGG: rso:RSc1992 hypothetical protein YP_002981778.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002981779.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002981780.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: rso:RSc1995 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein YP_002981781.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1996 transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein YP_002981782.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RSc1997 transcription regulator protein YP_002981783.1 catalyzes the oxidation of malate to oxaloacetate YP_002981784.1 PFAM: HpcH/HpaI aldolase; KEGG: rso:RSc1999 lyase protein YP_002981785.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_002981786.1 KEGG: rso:RSc2001 signal peptide protein YP_002981787.1 catalyzes the conversion of citrate to isocitrate YP_002981788.1 KEGG: rso:RSc2004 signal peptide protein YP_002981789.1 KEGG: rso:RSc2005 hypothetical protein YP_002981790.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc2006 transport binding transmembrane protein YP_002981791.1 KEGG: rso:RSc2007 lipoprotein transmembrane YP_002981792.1 PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: rso:RSc2008 hypothetical protein YP_002981793.1 PFAM: protein of unknown function DUF328; KEGG: rso:RSc2009 hypothetical protein YP_002981794.1 SMART: nucleotide binding protein PINc; KEGG: rso:RSc2010 hypothetical protein YP_002981795.1 catalyzes the transfer of an amino moiety YP_002981796.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2012 gst-related protein YP_002981797.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation YP_002981798.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002981799.1 PFAM: phosphoglycerate mutase; KEGG: rso:RSc2015 phosphoglycerate mutase protein YP_002981800.1 PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc2016 hypothetical protein YP_002981801.1 KEGG: rso:RSc2017 hypothetical protein YP_002981802.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV_2810 oxidoreductase YP_002981803.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbm:Shew185_0453 LysR family transcriptional regulator YP_002981804.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bmj:BMULJ_00330 MIT family metal ion transporter YP_002981805.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2018 transcription regulator protein YP_002981806.1 PFAM: thioesterase superfamily protein; KEGG: rso:RSc2019 signal peptide protein YP_002981807.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc2020 acyl-CoA dehydrogenase oxidoreductase protein YP_002981808.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2021 GST-related protein YP_002981809.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rso:RSc2022 hypothetical protein YP_002981811.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: rso:RSc2029 urease accessory protein YP_002981812.1 PFAM: urease accessory protein UreF; KEGG: rso:RSc2030 urease accessory protein UreF YP_002981813.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_002981814.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002981815.1 KEGG: rso:RSc2033 urease subunit beta protein; TIGRFAM: urease, beta subunit; PFAM: urease beta subunit YP_002981816.1 PFAM: HupE/UreJ protein; KEGG: rso:RSc2034 urease accessory UreJ transmembrane protein YP_002981817.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_002981818.1 PFAM: urease accessory protein UreD; KEGG: rso:RSc2036 urease accessory protein UreD YP_002981819.1 KEGG: rso:RSc2037 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter; SMART: AAA ATPase YP_002981820.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter; KEGG: rso:RSc2038 ABC transporter ATP-binding protein YP_002981821.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: rso:RSc2039 ABC transporter permease YP_002981822.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: rso:RSc2040 ABC transporter permease YP_002981823.1 TIGRFAM: urea ABC transporter, urea binding protein; PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc2041 UreA/short-chain amide-binding signal peptide protein YP_002981824.1 PFAM: MaoC domain protein dehydratase; KEGG: rso:RSc2042 hypothetical protein YP_002981825.1 PFAM: MaoC domain protein dehydratase; KEGG: rso:RSc2043 hypothetical protein YP_002981826.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc2044 acyl-CoA dehydrogenase oxidoreductase protein YP_002981827.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc2045 acyl-CoA dehydrogenase oxidoreductase protein YP_002981828.1 PFAM: protein of unknown function DUF1178; KEGG: rso:RSc2046 hypothetical protein YP_002981829.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2047 hypothetical protein YP_002981830.1 KEGG: rso:RSc2048 hypothetical protein YP_002981831.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981832.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981833.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002981834.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981835.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981836.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981837.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981838.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002981839.1 KEGG: rso:RSc2057 NADH dehydrogenase I chain F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_002981840.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981841.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981842.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981843.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002981844.1 Catalyzes the transfer of electrons from NADH to quinone YP_002981845.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rso:RSc2063 preprotein translocase subunit SecG YP_002981846.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002981847.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2065 NADPH quinone oxidoreductase oxidoreductase protein YP_002981848.1 KEGG: rso:RSc2066 hypothetical protein YP_002981849.1 KEGG: rso:RSc2067 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_002981850.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002981851.1 KEGG: rso:RSc2070 transporter signal peptide protein YP_002981852.1 KEGG: rso:RSc2071 hypothetical protein YP_002981853.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002981854.1 KEGG: rso:RSc2073 CDP-diacylglycerol--serine O-phosphatidyltransferase protein; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_002981855.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002981856.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002981857.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002981858.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_002981859.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002981860.1 KEGG: rso:RSc2079 hypothetical protein YP_002981861.1 KEGG: rso:RSc2080 hypothetical protein YP_002981862.1 PFAM: RDD domain containing protein; KEGG: rso:RSc2081 hypothetical protein YP_002981863.1 PFAM: PGAP1 family protein; KEGG: rso:RSc2082 lipase transmembrane protein YP_002981864.1 PFAM: metallophosphoesterase; KEGG: rso:RSc2083 hypothetical protein YP_002981865.1 PFAM: glycosyl transferase group 1; KEGG: rso:RSc2084 hypothetical protein YP_002981866.1 PFAM: diacylglycerol kinase; KEGG: rso:RSc2085 diacylglycerol kinase transmembrane protein YP_002981867.1 PFAM: regulatory protein TetR; KEGG: rso:RSc2086 transcription regulator protein YP_002981868.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2087 hypothetical protein YP_002981869.1 PFAM: protein of unknown function DUF924; KEGG: rso:RSc2089 transmembrane protein YP_002981870.1 PFAM: globin; KEGG: rso:RSc2090 oxygen-binding protein (globin) YP_002981871.1 PFAM: protein of unknown function DUF214; KEGG: rso:RSc2091 hypothetical protein YP_002981872.1 PFAM: regulatory protein LysR; KEGG: rso:RSc2092 hypothetical protein YP_002981873.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2093 signal peptide protein YP_002981874.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2094 transcription regulator protein YP_002981875.1 TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; ferredoxin; KEGG: rso:RSc2095 xanthine dehydrogenase (subunit A) oxidoreductase protein YP_002981876.1 KEGG: rso:RSc2096 xanthine dehydrogenase subunit B; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead YP_002981877.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: rso:RSc2097 xanthine dehydrogenase protein YP_002981878.1 catalyzes the formation of inosine from adenosine YP_002981879.1 Catalyzes the deamination of guanine YP_002981880.1 PFAM: protein of unknown function UPF0016; KEGG: rso:RSc2100 hypothetical protein YP_002981881.1 KEGG: reh:H16_A0659 hypothetical protein YP_002981882.1 KEGG: cti:RALTA_A0612 conserved hypothetical protein; type V secretory pathway, adhesin AidA; ribonucleases G and E YP_002981883.1 TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: reh:H16_A0656 hypothetical protein YP_002981885.1 PFAM: protein of unknown function DUF989; KEGG: rso:RSc2115 hypothetical protein YP_002981886.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: rso:RSc2116 transthyretin-like protein precursor YP_002981887.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RSc2117 transcription regulator protein YP_002981888.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rso:RSc2118 xanthine permease transmembrane protein YP_002981889.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_002981890.1 KEGG: rso:RSc2120 hypothetical protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase YP_002981891.1 TIGRFAM: OHCU decarboxylase; KEGG: rso:RSc2121 hypothetical protein YP_002981892.1 PFAM: porin Gram-negative type; KEGG: rso:RS00714 porin precursor transmembrane protein YP_002981893.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_002981894.1 KEGG: rso:RSc2124 lipoprotein transmembrane YP_002981895.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rso:RSc2125 aminopeptidase N YP_002981896.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002981897.1 PFAM: peptidoglycan-binding LysM; transport-associated; SMART: peptidoglycan-binding LysM; KEGG: rso:RSc2148 hypothetical protein YP_002981898.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: rso:RSc2149 hypothetical protein YP_002981899.1 KEGG: rso:RSc2150 hypothetical protein YP_002981900.1 KEGG: rso:RSc2151 signal peptide protein YP_002981901.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_4415 LysR family transcriptional regulator YP_002981902.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mms:mma_0404 transporter of the DMT superfamily YP_002981903.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002981904.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_002981905.1 KEGG: rso:RSc2153 bifunctional (P)ppGpp synthetase II/guanosine-3',5'-bisdiphosphate 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002981907.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002981908.1 Essential for recycling GMP and indirectly, cGMP YP_002981909.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: rso:RSc2156 hypothetical protein YP_002981910.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: rso:RSc2157 protein kinase YP_002981911.1 PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rso:RSc2158 hypothetical protein YP_002981912.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002981913.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002981914.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002981916.1 KEGG: reh:H16_B0962 ligand binding (PAS) regulator with LuxR-type HTH-motif; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-3 domain protein; regulatory protein LuxR; PAS fold-4 domain protein; SMART: PAS domain containing protein; regulatory protein LuxR YP_002981918.1 KEGG: rso:RSc2164 signal peptide protein YP_002981919.1 KEGG: rde:RD1_2267 ribonuclease E YP_002981920.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002981921.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rso:RSc2166 signal peptide protein YP_002981922.1 PFAM: protein of unknown function DUF979; KEGG: rso:RSc2167 hypothetical protein YP_002981923.1 PFAM: protein of unknown function DUF969; KEGG: rso:RSc2168 hypothetical protein YP_002981924.1 PFAM: LamB/YcsF family protein; KEGG: rso:RSc2169 hypothetical protein YP_002981925.1 KEGG: rso:RSc2170 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: allophanate hydrolase subunit 2; SMART: allophanate hydrolase subunit 2 YP_002981926.1 PFAM: allophanate hydrolase subunit 1; SMART: allophanate hydrolase subunit 1; KEGG: rso:RSc2171 hypothetical protein YP_002981927.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2172 drug transport transmembrane protein YP_002981928.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2173 sugar ATP binding ABC transporter protein YP_002981929.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2174 transmembrane ABC transporter protein YP_002981930.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2175 transmembrane ABC transporter protein YP_002981931.1 PFAM: basic membrane lipoprotein; KEGG: rso:RSc2177 lipoprotein YP_002981932.1 PFAM: protein of unknown function DUF1232; KEGG: rso:RSc2183 hypothetical protein YP_002981933.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2184 NADPH:quinone reductase, zeta-crystallin homolog oxidoreductase protein YP_002981934.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002981935.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2186 dehydrogenase/reductase oxidoreductase protein YP_002981936.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: rso:RSc2187 hypothetical protein YP_002981937.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: amc:MADE_00768 cytosine/purines, uracil, thiamine, allantoin transporter YP_002981938.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002981939.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: rso:RSc2189 hypothetical protein YP_002981940.1 PFAM: protein of unknown function DUF28; KEGG: rso:RSc2190 hypothetical protein YP_002981941.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002981942.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002981943.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_002981944.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rso:RSc2194 hypothetical protein YP_002981945.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002981946.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002981947.1 KEGG: rso:RSc2197 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_002981948.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bcm:Bcenmc03_2604 major facilitator transporter YP_002981949.1 KEGG: bte:BTH_I0707 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_002981950.1 PFAM: aldehyde Dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein YP_002981951.1 catalyzes the formation of benzaldehyde from benzoylformate YP_002981952.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcj:BCAL2797 LysR family regulatory protein YP_002981953.1 TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rso:RSc2199 hypothetical protein YP_002981954.1 KEGG: rso:RSc2200 ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase YP_002981955.1 PFAM: glycosyl transferase family 25; KEGG: cti:RALTA_A0814 glycosyl transferase YP_002981956.1 PFAM: glycosyl transferase family 2; KEGG: pna:Pnap_2051 glycosyl transferase, family 2 YP_002981957.1 PFAM: glycosyl transferase family 2; KEGG: pna:Pnap_2052 glycosyl transferase, family 2 YP_002981958.1 PFAM: O-antigen polymerase; KEGG: cti:RALTA_A2359 lipopolysaccharide O-antigen ligase transmembrane protein YP_002981959.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A3289 LPS biosynthesis-related protein YP_002981960.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002981961.1 PFAM: rhodanese; SMART: rhodanese; KEGG: rso:RSc2206 hypothetical protein YP_002981963.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: rso:RSc2207 TRP repressor binding protein YP_002981964.1 PFAM: pirin; KEGG: rso:RSc2208 pirin-like protein YP_002981965.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2209 transcriptional regulator transcription regulator protein YP_002981966.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_002981967.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: rso:RSc2211 ATP-dependent RNA helicase protein YP_002981968.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2212 hypothetical protein YP_002981969.1 PFAM: regulatory protein TetR; KEGG: rso:RSc2213 transcription regulator transcription regulator protein YP_002981971.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: reh:H16_A3290 biotin carboxylase YP_002981972.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2214 hypothetical protein YP_002981973.1 KEGG: bch:Bcen2424_5102 hypothetical protein YP_002981974.1 PFAM: OmpW family protein; KEGG: bmv:BMASAVP1_A0901 OmpW family outer membrane protein YP_002981975.1 KEGG: bpd:BURPS668_3132 lipoprotein YP_002981976.1 KEGG: bur:Bcep18194_B0544 hypothetical protein YP_002981978.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002981979.1 synthesizes RNA primers at the replication forks YP_002981980.1 KEGG: rso:RSc2217 hypothetical protein YP_002981981.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2218 transmembrane protein YP_002981982.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002981983.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_002981984.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002981985.1 PFAM: Polyprenyl synthetase; KEGG: rso:RSc2222 geranyltranstransferase YP_002981986.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002981987.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rso:RSc2224 dioxygenase alpha subunit YP_002981988.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2225 hypothetical protein YP_002981989.1 PFAM: rhodanese; SMART: rhodanese; KEGG: rso:RSc2226 thiosulfate sulfurtransferase protein YP_002981990.1 PFAM: zinc/iron permease; KEGG: rso:RSc2227 hypothetical protein YP_002981991.1 PFAM: dienelactone hydrolase; KEGG: rso:RSc2228 carboxymethylenebutenolidase (dienelactone hydrolase) protein YP_002981992.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc2229 NADH dehydrogenase, membrane flavoprotein FAD NAD ubiquinone electron transport oxidoreductase YP_002981993.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002981994.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2231 hypothetical protein YP_002981995.1 KEGG: rso:RSc2232 transmembrane protein YP_002981996.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_002981997.1 KEGG: rso:RSc2234 hypothetical protein YP_002981998.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc2235 DNA helicase II protein YP_002981999.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002982000.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 UTP--glucose-1-phosphate uridylyltransferase protein YP_002982001.1 KEGG: rso:RSc2238 hypothetical protein YP_002982002.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002982003.1 KEGG: rso:RSc2240 hypothetical protein YP_002982004.1 PFAM: TM1410 hypothetical-related protein; KEGG: rso:RSc2241 hypothetical protein YP_002982005.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_002982006.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2243 transcription regulator protein YP_002982007.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc2244 substrate-binding periplasmic ABC transporter protein YP_002982008.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2245 ABC transporter ATP-binding protein YP_002982009.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2246 ABC transporter ATP-binding protein YP_002982010.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2247 transmembrane ABC transporter protein YP_002982011.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2248 transmembrane ABC transporter protein YP_002982012.1 KEGG: rso:RSc2249 4-carboxymuconolactone decarboxylase protein; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase YP_002982013.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc2250 B-ketoadipate enol-lactone hydrolase transmembrane protein YP_002982014.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_002982015.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_002982016.1 KEGG: rso:RSc2253 3-oxoadipate CoA-transferase subunit B protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_002982017.1 KEGG: rso:RSc2254 3-oxoadipate CoA-transferase subunit A protein; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_002982018.1 KEGG: rso:RSc2255 transcription regulator protein; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_002982019.1 KEGG: rso:RSc2256 signal peptide protein YP_002982020.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc2257 amino-acid-binding periplasmic ABC transporter protein YP_002982021.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2258 amino acid ABC transporter transmembrane protein YP_002982022.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2259 amino acid ABC transporter transmembrane protein YP_002982023.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2260 amino-acid ATP-binding ABC transporter protein YP_002982024.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc2261 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002982025.1 catalyzes the oxidative deamination of D-amino acids YP_002982026.1 KEGG: rso:RSc2270 hypothetical protein YP_002982027.1 PFAM: glycosyl transferase group 1; KEGG: rso:RSc2271 hypothetical protein YP_002982028.1 KEGG: rso:RSc2272 hypothetical protein YP_002982029.1 KEGG: rso:RSc2274 lipoprotein YP_002982030.1 PFAM: Tetratricopeptide TPR_4; KEGG: rso:RSc2275 signal peptide protein YP_002982031.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: rso:RSc2277 hypothetical protein YP_002982032.1 PFAM: carboxymuconolactone decarboxylase; KEGG: kpe:KPK_5444 carboxymuconolactone decarboxylase family protein YP_002982033.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rfr:Rfer_4023 MerR family transcriptional regulator YP_002982034.1 KEGG: rso:RSc2279 signal peptide protein YP_002982035.1 KEGG: rso:RSc2280 signal peptide protein YP_002982036.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: fal:FRAAL4174 signal peptide YP_002982037.1 PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 transmembrane protein YP_002982038.1 KEGG: bxe:Bxe_B1529 hypothetical protein YP_002982039.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B1057 ABC-type transporter, periplasmic component YP_002982040.1 KEGG: cti:RALTA_B0676 cytochrome C550 protein; ethanol oxydation system YP_002982041.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family YP_002982042.1 PFAM: alpha/beta hydrolase fold; KEGG: reh:H16_B1053 prolyl aminopeptidase YP_002982043.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_002982044.1 possibly involved in transport of pyrroloquinoline quinone transport YP_002982045.1 Required in the synthesis of PPQ, but its exact function is unknown YP_002982046.1 PFAM: coenzyme PQQ synthesis D; KEGG: reh:H16_B1050 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein D YP_002982047.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: cti:RALTA_B0668 quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family YP_002982048.1 PFAM: cytochrome C class I; KEGG: reh:H16_B1048 cytochrome C551/c552 YP_002982049.1 KEGG: reh:H16_B1047 quinate dehydrogenase (PQQ); TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone YP_002982050.1 PFAM: cytochrome B561; KEGG: bxe:Bxe_B2465 cytochrome b561 YP_002982051.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: reu:Reut_B5421 WD-40 repeat-containing protein YP_002982052.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvi:Bcep1808_6560 TonB-dependent receptor YP_002982053.1 PFAM: aldehyde Dehydrogenase; KEGG: rme:Rmet_5128 aldehyde dehydrogenase YP_002982054.1 KEGG: reh:H16_B1045 hypothetical membrane associated protein YP_002982055.1 PFAM: beta-lactamase domain protein; KEGG: cti:RALTA_B0665 metal dependent hydrolase YP_002982056.1 PFAM: beta-lactamase domain protein; KEGG: cti:RALTA_B0674 conserved hypothetical protein; metal dependent hydrolase YP_002982057.1 KEGG: mpt:Mpe_A1592 outer membrane protein (porin) YP_002982058.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rso:RS02093 hypothetical protein YP_002982059.1 KEGG: bcj:BCAL2491 hypothetical protein YP_002982060.1 PFAM: protein of unknown function DUF347; KEGG: rme:Rmet_4981 protein of unknown function DUF347 YP_002982061.1 KEGG: bvi:Bcep1808_7222 signal peptide protein YP_002982062.1 PFAM: protein of unknown function DUF347; KEGG: rme:Rmet_4979 protein of unknown function DUF347 YP_002982063.1 KEGG: rme:Rmet_4978 two component transcriptional regulator, winged helix family YP_002982064.1 KEGG: aav:Aave_2651 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_002982065.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo1226 lactoylglutathione lyase YP_002982066.1 involved in siderophore biosynthesis; KEGG: vei:Veis_2704 hypothetical protein YP_002982067.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: mpt:Mpe_A0945 2-keto-gluconate dehydrogenase YP_002982068.1 KEGG: vei:Veis_2706 hypothetical protein YP_002982069.1 PFAM: cytochrome C class I; KEGG: rme:Rmet_3424 cytochrome C, class I YP_002982070.1 KEGG: similar to C6orf205 protein YP_002982071.1 PFAM: cytochrome C oxidase subunit I; KEGG: rso:RS02325 cytochrome C oxidase subunit transmembrane protein YP_002982072.1 PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: rso:RS02324 signal peptide protein YP_002982073.1 PFAM: cytochrome C class I; KEGG: rso:RS02321 hypothetical protein YP_002982074.1 KEGG: rso:RS02320 hypothetical protein YP_002982075.1 KEGG: rso:RS02319 hypothetical protein YP_002982076.1 KEGG: gur:Gura_0809 hypothetical protein YP_002982077.1 KEGG: rha:RHA1_ro00764 hypothetical protein YP_002982078.1 KEGG: rme:Rmet_4495 hypothetical protein YP_002982079.1 KEGG: bps:BPSL3352 hypothetical protein YP_002982082.1 KEGG: LOC764463; hypothetical protein LOC764463 YP_002982084.1 KEGG: rme:Rmet_4492 hypothetical protein YP_002982085.1 KEGG: har:HEAR1528 hypothetical protein YP_002982086.1 PFAM: zonular occludens toxin; KEGG: har:HEAR1530 IKe filamentous prophage; protein involved in phage assembly YP_002982088.1 KEGG: rme:Rmet_4488 hypothetical protein YP_002982090.1 PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 site-specific recombinases, DNA invertase Pin YP_002982091.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002982092.1 PFAM: ATPase AAA; magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: rso:RSc2338 recombination factor protein RarA YP_002982093.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bch:Bcen2424_5285 major facilitator transporter YP_002982094.1 TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: bte:BTH_II0784 agmatinase YP_002982095.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_1040 transcriptional regulator, LysR family YP_002982096.1 KEGG: rso:RSc2339 lipoprotein transmembrane YP_002982097.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_002982098.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: rso:RSc2341 cell division FtsK transmembrane protein YP_002982099.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2342 thioredoxin reductase oxidoreductase protein YP_002982100.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: rso:RSc2343 hypothetical protein YP_002982101.1 PFAM: protein of unknown function UPF0126; KEGG: rso:RSc2344 hypothetical protein YP_002982102.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RSc2345 nitrogen regulatory P-II transcription regulator protein YP_002982103.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc2346 methyltransferase protein YP_002982104.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002982105.1 PFAM: protein of unknown function DUF482; KEGG: rso:RSc2348 hypothetical protein YP_002982106.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002982107.1 PFAM: aldehyde Dehydrogenase; KEGG: rso:RSc2350 aldehyde dehydrogenase YP_002982108.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002982109.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2352 permease transmembrane protein YP_002982110.1 PFAM: HemY domain protein; KEGG: rso:RSc2355 protein porphyrin biosynthesis YP_002982111.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_002982112.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002982113.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002982114.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_4076 major facilitator transporter YP_002982115.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bam:Bamb_3487 LysR family transcriptional regulator YP_002982116.1 KEGG: rso:RSc2360 hypothetical protein YP_002982117.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RSc2361 RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein YP_002982118.1 KEGG: rso:RSc2362 hypothetical protein YP_002982119.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002982120.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rso:RSc2365 biodegradative arginine decarboxylase protein YP_002982121.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002982122.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: rso:RSc2367 FdhD protein YP_002982123.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: rso:RSc2368 superoxide dismutase Cu-Zn precursor protein YP_002982124.1 KEGG: rso:RSc2369 signal peptide protein YP_002982125.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: rso:RSc2370 hypothetical protein YP_002982126.1 KEGG: rso:RSc2371 lipoprotein YP_002982127.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc2372 formate dehydrogenase iron-sulfur subunit YP_002982128.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: rso:RSc2373 formate dehydrogenase large subunit YP_002982129.1 TIGRFAM: formate dehydrogenase region TAT target; KEGG: rso:RSc2374 transmembrane protein YP_002982130.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: rso:RSc2375 hypothetical protein YP_002982131.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc2376 ferredoxin protein YP_002982132.1 KEGG: rso:RSc2377 proline rich protein YP_002982133.1 KEGG: rso:RSc2378 hypothetical protein YP_002982134.1 PFAM: protein of unknown function DUF59; KEGG: rso:RSc2379 MRP family ATP-binding protein YP_002982135.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: rso:RSc2380 hypothetical protein YP_002982136.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002982137.1 KEGG: rso:RSc2382 lipoprotein YP_002982138.1 PFAM: protein of unknown function DUF490; KEGG: rso:RSc2383 signal peptide protein YP_002982139.1 PFAM: surface antigen (D15); KEGG: rso:RSc2384 lipoprotein YP_002982140.1 KEGG: rso:RSc2385 hypothetical protein YP_002982141.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rso:RSc2386 hypothetical protein YP_002982142.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002982143.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: rso:RSc2389 partition-related protein YP_002982144.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002982145.1 PFAM: cobalbumin biosynthesis protein; KEGG: rso:RSc2391 cobalamin biosynthesis bifunctional protein: cobinamide kinase and cobinamide phosphate guanylyltransferase YP_002982146.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002982147.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_002982148.1 PFAM: periplasmic binding protein; KEGG: rso:RSc2394 substrate-binding periplasmic (PBP) ABC transporter protein YP_002982149.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: phosphoglycerate mutase; KEGG: rso:RSc2395 hypothetical protein YP_002982150.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002982151.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002982152.1 KEGG: cti:RALTA_A2443 cob(I)alamin and cobinamide ATP-dependent adenolsyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_002982153.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2398 ABC transporter ATP-binding protein YP_002982154.1 PFAM: transport system permease protein; KEGG: rso:RSc2399 transmembrane ABC transporter protein YP_002982155.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc2400 outer membrane receptor protein YP_002982156.1 KEGG: rso:RSc2401 hypothetical protein YP_002982157.1 PFAM: protein of unknown function DUF710; KEGG: rso:RSc2402 hypothetical protein YP_002982158.1 PFAM: protein of unknown function DUF55; KEGG: rso:RSc2403 hypothetical protein YP_002982159.1 PFAM: protein of unknown function DUF541; KEGG: reu:Reut_A0649 hypothetical protein YP_002982160.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002982161.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2411 transcription regulator protein YP_002982162.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002982163.1 KEGG: rso:RSc2413 hypothetical protein YP_002982164.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_002982165.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002982166.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rso:RSc2416 hypothetical protein YP_002982167.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rso:RSc2417 hypothetical protein YP_002982168.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rso:RSc2418 hypothetical protein YP_002982169.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: rso:RSc2419 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein YP_002982170.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_002982171.1 KEGG: rso:RSc2421 sulfate adenylyltransferase subunit 1 protein; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_002982172.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002982173.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_002982174.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2424 hypothetical protein YP_002982175.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rso:RSc2425 sulfite reductase oxidoreductase protein YP_002982176.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc2426 hypothetical protein YP_002982177.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2427 transcriptional regulator CysB-like protein YP_002982178.1 KEGG: rso:RSc2428 amino acid-binding periplasmic (PBP) ABC transporter protein YP_002982179.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rso:RSc2429 oxidoreductase protein YP_002982180.1 PFAM: integrase family protein; KEGG: bmj:BMULJ_01444 bacteriophage integrase / tyrosine recombinase YP_002982181.1 KEGG: aav:Aave_1637 hypothetical protein YP_002982182.1 KEGG: ace:Acel_0587 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_002982183.1 KEGG: bvi:Bcep1808_4567 hypothetical protein YP_002982184.1 PFAM: glycoside hydrolase family 19; KEGG: pst:PSPTO_4037 lysozyme YP_002982185.1 KEGG: abm:ABSDF1052 bacteriophage protein YP_002982186.1 PFAM: acyltransferase 3; KEGG: bcj:BCAM1009 acyltransferase YP_002982187.1 KEGG: bam:Bamb_2404 hypothetical protein YP_002982188.1 PFAM: lipolytic protein G-D-S-L family; KEGG: hypothetical protein YP_002982189.1 KEGG: bbt:BBta_6579 hypothetical protein YP_002982190.1 KEGG: bvi:Bcep1808_4559 bacteriophage protein YP_002982191.1 KEGG: reu:Reut_A2410 bacteriophage protein YP_002982192.1 KEGG: reu:Reut_A2409 hypothetical protein YP_002982193.1 KEGG: bcj:BCAL2970 hypothetical protein YP_002982194.1 KEGG: reu:Reut_A2406 hypothetical protein YP_002982195.1 KEGG: bcj:BCAM1080 hypothetical protein YP_002982196.1 KEGG: bmj:BMULJ_01428 bacteriophage protein YP_002982197.1 KEGG: sty:STY1061 bacteriophage protein YP_002982198.1 KEGG: bcj:BCAM1077 hypothetical protein YP_002982199.1 KEGG: reu:Reut_A2402 bacteriophage protein YP_002982200.1 KEGG: bcj:BCAM1075 hypothetical protein YP_002982201.1 KEGG: bcj:BCAM1074 exported phage protein YP_002982202.1 KEGG: bmj:BMULJ_01423 bacteriophage protein YP_002982203.1 KEGG: bcj:BCAM1072 hypothetical protein YP_002982204.1 KEGG: sgl:SG1813 hypothetical protein YP_002982205.1 KEGG: bmj:BMULJ_01420 bacteriophage protein YP_002982206.1 KEGG: bmj:BMULJ_01419 truncated bacteriophage protein YP_002982207.1 KEGG: reu:Reut_A2394 bacteriophage protein YP_002982208.1 KEGG: reu:Reut_A2393 bacteriophage protein YP_002982209.1 KEGG: reu:Reut_A2392 bacteriophage protein YP_002982210.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: reu:Reut_A2390 phage head morphogenesis protein, SPP1 gp7 YP_002982211.1 TIGRFAM: phage-associated protein, HI1409 family; KEGG: reu:Reut_A2389 hypothetical protein YP_002982212.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; KEGG: reu:Reut_A2388 phage uncharacterized protein, C-terminal YP_002982213.1 KEGG: pmr:PMI0496 phage protein YP_002982214.1 KEGG: bmu:Bmul_1830 hypothetical protein YP_002982216.1 KEGG: bph:Bphy_1852 hypothetical protein YP_002982217.1 KEGG: bmj:BMULJ_01410 bacteriophage protein YP_002982218.1 KEGG: aha:AHA_2040 hypothetical protein YP_002982219.1 KEGG: bpt:Bpet0967 hypothetical protein YP_002982220.1 KEGG: dac:Daci_4127 hypothetical protein YP_002982221.1 KEGG: rso:RSc3236 bacteriophage-related protein YP_002982223.1 KEGG: bbr:BB2205 hypothetical protein YP_002982224.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: bvi:Bcep1808_1163 DnaB domain-containing protein YP_002982225.1 KEGG: eugene3.06770005. YP_002982227.1 KEGG: xfm:Xfasm12_1163 hypothetical protein YP_002982228.1 KEGG: dac:Daci_1620 XRE family transcriptional regulator YP_002982229.1 PFAM: peptidase S24 and S26 domain protein; KEGG: bmj:BMULJ_01401 bacteriophage repressor protein CI YP_002982234.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_002982239.1 KEGG: yps:YPTB1787 hypothetical protein YP_002982240.1 KEGG: abn:AB57_2736 hypothetical protein YP_002982241.1 KEGG: yps:YPTB1783 hypothetical protein YP_002982243.1 KEGG: bpd:BURPS668_A2385 hypothetical protein YP_002982245.1 KEGG: bpt:Bpet0944 hypothetical protein YP_002982248.1 KEGG: bvi:Bcep1808_4502 hypothetical protein YP_002982250.1 KEGG: bmj:BMULJ_01382 hypothetical protein YP_002982251.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002982252.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid YP_002982253.1 PFAM: major facilitator superfamily MFS_1; KEGG: bac:BamMC406_1146 major facilitator transporter YP_002982254.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc2430 transcription regulator protein YP_002982255.1 PFAM: Chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rso:RSc2431 hypothetical protein YP_002982256.1 KEGG: rso:RSc2432 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002982257.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rso:RSc2433 oxidoreductase protein YP_002982258.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_002982259.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002982260.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc2436 hypothetical protein YP_002982261.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2437 amino acid ABC transporter ATP-binding protein YP_002982262.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2438 amino acid ABC transporter ATP-binding protein YP_002982263.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2439 amino-acid transmembrane ABC transporter protein YP_002982264.1 PFAM: inner-membrane translocator; KEGG: rso:RSc2440 amino-acid transmembrane ABC transporter protein YP_002982265.1 PFAM: extracellular ligand-binding receptor; KEGG: rme:Rmet_2867 extracellular ligand-binding receptor YP_002982266.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002982267.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc2443 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase protein YP_002982268.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002982269.1 required for 70S ribosome assembly YP_002982270.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002982271.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002982272.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002982273.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002982274.1 PFAM: fatty acid desaturase; KEGG: rso:RSc2450 stearoyl-CoA desaturase oxidoreductase protein YP_002982276.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2451 hypothetical protein YP_002982277.1 KEGG: rso:RSc2452 endonuclease protein YP_002982278.1 PFAM: Fmu (Sun) domain protein; KEGG: rso:RSc2453 hypothetical protein YP_002982279.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002982280.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc2455 response regulator VSRC transcription regulator protein YP_002982281.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rso:RSc2456 composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein YP_002982282.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002982283.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002982284.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002982285.1 PFAM: protein of unknown function DUF218; KEGG: rso:RSc2460 transmembrane protein YP_002982286.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002982287.1 PFAM: Luciferase-like monooxygenase; KEGG: rso:RSc2462 hypothetical protein YP_002982288.1 catalyzes the formation of dUMP from dUTP YP_002982289.1 KEGG: rso:RSc2464 ATP-dependent protease ATP-binding specificity subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_002982290.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_002982291.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rso:RSc2466 cold shock-like transcription regulator protein YP_002982292.1 KEGG: rso:RSc2467 hypothetical protein YP_002982294.1 Converts isocitrate to alpha ketoglutarate YP_002982296.1 KEGG: rso:RSc2491 signal peptide protein YP_002982297.1 PFAM: metallophosphoesterase; KEGG: rso:RSc2492 hypothetical protein YP_002982298.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: rso:RSc2493 signal peptide protein YP_002982299.1 PFAM: protein of unknown function DUF192; KEGG: rso:RSc2494 signal peptide protein YP_002982300.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc2495 hydrolase protein YP_002982301.1 KEGG: rso:RSc2496 signal peptide protein YP_002982302.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2497 transcription regulator protein YP_002982303.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2498 transcription regulator protein YP_002982304.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc2499 multidrug resistance protein YP_002982305.1 PFAM: DoxX family protein; KEGG: rso:RSc2500 hypothetical protein YP_002982306.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_A2268 transcriptional regulator, LysR family YP_002982307.1 PFAM: gamma-glutamyltranspeptidase; KEGG: rso:RSc2501 gamma-glutamyltranspeptidase protein YP_002982308.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bpy:Bphyt_3314 major facilitator superfamily MFS_1 YP_002982309.1 KEGG: bpy:Bphyt_5964 hypothetical protein YP_002982310.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bxe:Bxe_B0029 dihydrodipicolinate synthase YP_002982311.1 KEGG: rso:RSc2502 hypothetical protein YP_002982312.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: rso:RSc2503 hypothetical protein YP_002982313.1 Converts glucose to D-glucono-1,5 lactone YP_002982314.1 PFAM: AlkA domain protein; Ada metal-binding domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: rso:RSc2505 transcription regulator protein YP_002982315.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: rso:RSc2506 methylated-DNA--protein-cysteine methyltransferase YP_002982316.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2507 hypothetical protein YP_002982317.1 PFAM: HipA domain protein; KEGG: rso:RSc2508 hypothetical protein YP_002982318.1 KEGG: rso:RSc2509 hypothetical protein YP_002982319.1 KEGG: ccr:CC_2809 M20/M25/M40 family peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002982320.1 KEGG: rso:RSc2512 cyclohexadienyl dehydratase precursor signal peptide protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_002982321.1 KEGG: rso:RSc2513 hypothetical protein YP_002982322.1 KEGG: rso:RSc2514 signal peptide protein YP_002982323.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rso:RSc2515 hypothetical protein YP_002982324.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2516 lipoprotein transmembrane YP_002982325.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc2517 hypothetical protein YP_002982327.1 PFAM: citrate transporter; KEGG: rso:RSc2518 hypothetical protein YP_002982328.1 KEGG: rso:RSc2519 hypothetical protein YP_002982329.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: cti:RALTA_A3008 proline/glycine betaine transporter, major facilitator superfamily YP_002982330.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rso:RSc2520 hypothetical protein YP_002982331.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: rso:RSc2521 DNA-binding protein HU-beta YP_002982332.1 PFAM: protein of unknown function DUF886; KEGG: rso:RSc2522 hypothetical protein YP_002982333.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002982334.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: reh:H16_A0045 ABC-type transporter, ATPase component: PAAT family YP_002982335.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A0046 ABC-type transporter, permease component: PAAT family YP_002982336.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: reh:H16_A0047 ABC-type transporter, periplasmic component: PAAT family YP_002982337.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_A0014 transcriptional regulator, IclR family YP_002982338.1 KEGG: cti:RALTA_A1610 hypothetical protein YP_002982339.1 PFAM: protein of unknown function DUF1486; KEGG: bpy:Bphyt_1261 protein of unknown function DUF1486 YP_002982340.1 PFAM: peptidase M50; KEGG: rso:RSc2524 hypothetical protein YP_002982341.1 PFAM: manganese and iron superoxide dismutase; KEGG: rso:RSc2526 superoxide dismutase [Fe] protein YP_002982342.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002982343.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc2528 biopolymer transport ExbB-like transmembrane protein YP_002982344.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc2529 biopolymer transport ExbD-like transmembrane protein YP_002982345.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_002982346.1 PFAM: protein of unknown function DUF343; KEGG: rso:RSc2531 hypothetical protein YP_002982347.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002982348.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002982349.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2534 3-hydroxyacyl-CoA dehydrogenase type II oxidoreductase protein YP_002982350.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2537 transcription regulator transcription regulator protein YP_002982351.1 PFAM: bile acid:sodium symporter; KEGG: rso:RSc2538 lipoprotein transmembrane YP_002982352.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_0720 GCN5-related N-acetyltransferase YP_002982353.1 KEGG: rso:RSc2539 N-acetylmuramoyl-L-alanine amidase AmiC precursor protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_002982354.1 PFAM: protein of unknown function UPF0079; KEGG: rso:RSc2540 hypothetical protein YP_002982355.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: rso:RSc2541 iron-sulfur 4Fe-4S ferredoxin protein YP_002982356.1 KEGG: rso:RSc2542 lipoprotein transmembrane YP_002982357.1 PFAM: conserved hypothetical protein; KEGG: reu:Reut_A0579 hypothetical protein YP_002982358.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2543 methylated-DNA--protein-cysteine methyltransferase YP_002982359.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002982360.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc2545 hypothetical protein YP_002982361.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002982362.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cvi:CV_2101 AraC family transcriptional regulator YP_002982363.1 PFAM: peptidase S45 penicillin amidase; KEGG: rso:RSc2547 aculeacin A acylase transmembrane protein YP_002982364.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002982365.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002982366.1 PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein YP_002982367.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_002982368.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002982369.1 KEGG: rso:RSc2555 hypothetical protein YP_002982370.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002982371.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: rso:RSc2557 MVIN_ECOLI homolog transmembrane protein YP_002982372.1 KEGG: rso:RSc2558 hypothetical protein YP_002982373.1 PFAM: SNARE associated Golgi protein; KEGG: rso:RSc2559 DedA DSG-1 protein transmembrane YP_002982374.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002982375.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002982376.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc2565 acetyltransferase protein YP_002982377.1 KEGG: rso:RSc2567 hypothetical protein YP_002982378.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 alkylated DNA repair protein YP_002982379.1 KEGG: rso:RSc2569 DNA-3-methyladenine glycosylase protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein YP_002982380.1 TIGRFAM: periplasmic nitrate reductase, NapE protein; PFAM: periplasmic nitrate reductase NapE; KEGG: cti:RALTA_B0653 periplasmic nitrate reductase accessory protein YP_002982381.1 PFAM: NapD family protein; KEGG: reh:PHG210 periplasmic nitrate reductase accessory protein YP_002982382.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_002982383.1 PFAM: nitrate reductase cytochrome C-type subunit (NapB); KEGG: reu:Reut_B4764 periplasmic nitrate reductase subunit NapB YP_002982384.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome C domain protein; KEGG: cti:RALTA_B0649 nitrate reductase, cytochrome C-type protein YP_002982385.1 KEGG: reh:PHG214 ABC heme export system atp-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; SMART: AAA ATPase YP_002982386.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C-type biogenesis protein CcmB; KEGG: reu:Reut_B4767 cytochrome C-type biogenesis protein CcmB YP_002982387.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: cti:RALTA_B0646 ABC transporter, heme transfer protein, cytochrome C-type biogenesis YP_002982389.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane YP_002982390.1 TIGRFAM: cytochrome C-type biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: reh:PHG218 cytochrome C-type biogenesis protein YP_002982391.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: reh:PHG219 cytochrome C-type biogenesis protein YP_002982392.1 PFAM: cytochrome C biogenesis protein; KEGG: reh:PHG220 cytochrome C-type biogenesis protein YP_002982393.1 KEGG: cti:RALTA_B0640 cytochrome C-type biogenesis protein; TIGRFAM: cytochrome C-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_002982394.1 KEGG: rso:RSc2570 bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type YP_002982395.1 KEGG: rso:RSc2572 lipoprotein YP_002982396.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002982397.1 PFAM: protein of unknown function UPF0118; KEGG: rso:RSc2624 ABC transporter permease YP_002982398.1 TIGRFAM: DnaA regulatory inactivator Hda; KEGG: rso:RSc2625 hypothetical protein YP_002982399.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: rso:RSc2626 hydrolase protein YP_002982400.1 KEGG: rso:RSc2627 polynucleotide adenylyltransferase protein; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_002982401.1 KEGG: rso:RSc2628 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_002982402.1 PFAM: deoxynucleoside kinase; KEGG: rso:RSc2629 deoxyguanosine kinase (dGuo kinase) (DGK) protein YP_002982403.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002982404.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2631 transmembrane ABC transporter protein YP_002982405.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2632 ABC transporter ATP-binding protein YP_002982406.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; KEGG: rso:RSc2633 para-aminobenzoate synthetase component I protein YP_002982407.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002982408.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002982409.1 PFAM: phospholipase A1; KEGG: reh:H16_A1139 outer membrane phospholipase A YP_002982410.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rso:RSc2636 regulator of nucleoside diphosphate kinase transcription regulator protein YP_002982411.1 KEGG: rso:RSc2638 thioredoxin protein YP_002982412.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002982413.1 KEGG: rso:RSc2641 transmembrane protein YP_002982414.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: rso:RSc2642 heat shock protein 15 YP_002982415.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002982416.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002982417.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002982418.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002982419.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002982420.1 KEGG: rso:RSc2648 histidine utilization repressor transcription regulator protein; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_002982421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A4207 ABC taurine transporter, inner membrane subunit YP_002982422.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bur:Bcep18194_A6226 ABC taurine transporter, ATPase subunit YP_002982423.1 KEGG: bcm:Bcenmc03_2896 taurine ABC transporter, periplasmic binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_002982424.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002982425.1 catalyzes the phosphorylation of NAD to NADP YP_002982426.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rso:RSc2651 DNA repair protein YP_002982427.1 KEGG: rso:RSc2652 lipoprotein YP_002982428.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rso:RSc2653 extracellular protease signal peptide protein YP_002982429.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rso:RSc2654 serine protease protein YP_002982430.1 KEGG: rso:RSc2655 hypothetical protein YP_002982431.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002982432.1 KEGG: rso:RSc2657 hypothetical protein YP_002982433.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc2658 nitrilase protein YP_002982434.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rso:RSc2659 TldD protein YP_002982435.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002982436.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 hypothetical protein YP_002982437.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rso:RSc2663 hypothetical protein YP_002982438.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2664 D-lactate dehydrogenase (cytochrome) oxidoreductase protein YP_002982439.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2665 transcription regulator protein YP_002982440.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2666 glycolate oxidase FAD-linked subunit oxidoreductase YP_002982441.1 PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc2667 glycolate oxidase FAD binding subunit YP_002982442.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc2668 glycolate oxidase iron-sulfur subunit YP_002982443.1 PFAM: LrgA family protein; KEGG: rso:RSc2669 hypothetical protein YP_002982444.1 PFAM: LrgB family protein; KEGG: rso:RSc2670 hypothetical protein YP_002982445.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc2671 hypothetical protein YP_002982446.1 PFAM: cupin; KEGG: rso:RSc2672 hypothetical protein YP_002982447.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: rso:RSc2673 repressor transcription regulator protein YP_002982448.1 PFAM: glutathione peroxidase; KEGG: rso:RSc2674 glutathione peroxidase protein YP_002982449.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: rso:RSc2681 twitching motility protein YP_002982450.1 KEGG: rso:RSc2682 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_002982451.1 PFAM: alanine racemase domain protein; KEGG: rso:RSc2683 hypothetical protein YP_002982452.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002982453.1 catalyzes the conversion of 4-hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_002982454.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: aav:Aave_3132 catalase/peroxidase HPI YP_002982455.1 PFAM: Ferritin Dps family protein; KEGG: rso:RSc2687 DNA protection during starvation or oxydative stress transcription regulator protein YP_002982456.1 KEGG: rso:RSc2688 hypothetical protein YP_002982457.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bcm:Bcenmc03_5051 ATPase central domain-containing protein YP_002982459.1 KEGG: bmj:BMULJ_03788 hypothetical protein YP_002982460.1 PFAM: Gp37Gp68 family protein; KEGG: pst:PSPTO_0049 hypothetical protein YP_002982461.1 PFAM: peptidase S24 and S26 domain protein; KEGG: mfa:Mfla_1781 prophage repressor YP_002982462.1 KEGG: rfr:Rfer_1071 hypothetical protein YP_002982463.1 KEGG: pna:Pnap_2236 hypothetical protein YP_002982464.1 KEGG: xac:XAC2421 hypothetical protein YP_002982465.1 KEGG: pca:Pcar_0116 hypothetical protein YP_002982466.1 KEGG: tcx:Tcr_1645 hypothetical protein YP_002982467.1 PFAM: TniB family protein; KEGG: asa:ASA_1044 TniB YP_002982468.1 KEGG: asa:ASA_1043 TniA transposase YP_002982469.1 PFAM: TnsA endonuclease; KEGG: rfr:Rfer_3933 hypothetical protein YP_002982470.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein YP_002982471.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rme:Rmet_5322 periplasmic sensor signal transduction histidine kinase YP_002982472.1 PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rme:Rmet_5323 two component transcriptional regulator, LuxR family YP_002982473.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5319 heavy metal efflux pump CzcA YP_002982474.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5320 secretion protein HlyD YP_002982475.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5321 RND efflux system, outer membrane lipoprotein, NodT YP_002982476.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_002982478.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 manganese transport transmembrane protein YP_002982479.1 KEGG: rso:RS02001 hypothetical protein YP_002982480.1 PFAM: carbohydrate-selective porin OprB; KEGG: rso:RSc1195 hypothetical protein YP_002982481.1 PFAM: protein of unknown function DUF156; KEGG: bte:BTH_II0391 hypothetical protein YP_002982482.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bam:Bamb_5056 cation diffusion facilitator family transporter YP_002982483.1 KEGG: nha:Nham_4399 hypothetical protein YP_002982484.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cvi:CV_2442 cation antiporter YP_002982485.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2690 hydrogen peroxide-inducible genes activator transcription regulator protein YP_002982486.1 PFAM: metallophosphoesterase; KEGG: dar:Daro_3826 metallophosphoesterase YP_002982487.1 KEGG: bac:BamMC406_1290 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_002982488.1 catalyzes branch migration in Holliday junction intermediates YP_002982489.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002982490.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002982491.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002982492.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002982493.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002982494.1 PFAM: YceI family protein; KEGG: rso:RSc2717 signal peptide protein YP_002982495.1 PFAM: YceI family protein; KEGG: rso:RSc2718 signal peptide protein YP_002982496.1 PFAM: cytochrome B561; KEGG: rso:RSc2719 cytochrome b-561 transmembrane protein YP_002982497.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002982498.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2721 glutathione S-transferase protein YP_002982499.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: rso:RSc2722 signal peptide protein YP_002982500.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002982501.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2724 hypothetical protein YP_002982502.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rso:RSc2730 NAD(P) transhydrogenase alpha subunit YP_002982503.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002982504.1 KEGG: rso:RSc2732 transmembrane NAD(P) transhydrogenase alpha subunit YP_002982505.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: rso:RSc2733 transmembrane NADP transhydrogenase subunit beta oxidoreductase protein YP_002982506.1 PFAM: response regulator receiver; KEGG: rso:RSc2734 response regulator transcription regulator protein YP_002982507.1 KEGG: rso:RSc2735 regulatory protein YP_002982508.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc2736 transmembrane sensor histidine kinase transcription regulator protein YP_002982509.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: rso:RSc2737 two component response regulator transcription regulator protein YP_002982510.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc2738 response regulator transcription regulator protein YP_002982511.1 PFAM: RNA methylase; THUMP domain protein; KEGG: rso:RSc2739 hypothetical protein YP_002982512.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2740 hypothetical protein YP_002982513.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002982514.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002982515.1 PFAM: Rare lipoprotein B; KEGG: rso:RSc2743 lipoprotein B precursor transmembrane YP_002982516.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002982517.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002982518.1 PFAM: SmpA/OmlA domain protein; KEGG: rso:RSc2746 lipoprotein transmembrane YP_002982519.1 PFAM: ferric-uptake regulator; KEGG: rso:RSc2747 ferric uptake transcriptional repressor transcription regulator protein YP_002982520.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc2748 transcription regulator protein YP_002982521.1 KEGG: reu:Reut_A2840 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002982522.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002982523.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rso:RSc2751 galactonate dehydratase protein YP_002982524.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_002982525.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2753 short chain dehydrogenase YP_002982526.1 PFAM: aldose 1-epimerase; KEGG: rso:RSc2754 hypothetical protein YP_002982527.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: rso:RSc2755 hypothetical protein YP_002982528.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002982529.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002982530.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2758 L-arabinose ABC transporter periplasmic-binding protein YP_002982531.1 KEGG: rso:RSc2759 2-dehydro-3-deoxygalactonokinase protein YP_002982532.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2760 porin signal peptide protein YP_002982533.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc2761 transcription regulator protein YP_002982534.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc2762 hypothetical protein YP_002982535.1 PFAM: protein of unknown function DUF558; KEGG: rso:RSc2763 hypothetical protein YP_002982536.1 PFAM: protein of unknown function DUF937; KEGG: rso:RSc2764 hypothetical protein YP_002982537.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6715 LysR family transcriptional regulator YP_002982538.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002982539.1 PFAM: dihydrodipicolinate synthetase; KEGG: bte:BTH_II1630 dihydrodipicolinate synthase YP_002982540.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bph:Bphy_4216 galactose 1-dehydrogenase YP_002982541.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bpy:Bphyt_3960 monosaccharide-transporting ATPase YP_002982542.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002982543.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002982544.1 PFAM: Barstar (barnase inhibitor); KEGG: rso:RSc2765 hypothetical protein YP_002982545.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rso:RSc2766 guanyl-specific ribonuclease precursor signal peptide protein YP_002982546.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002982547.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_002982548.1 PFAM: phosphatidylglycerophosphatase A; KEGG: rso:RSc2769 phosphatidyl-glycerophosphatase hydrolase transmembrane protein YP_002982549.1 PFAM: CinA domain protein; KEGG: rso:RSc2770 hypothetical protein YP_002982550.1 KEGG: rso:RSc2772 metal transport transmembrane protein YP_002982551.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002982552.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: rso:RSc2774 magnesium/cobalt transporter CorA YP_002982553.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_002982554.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002982555.1 TIGRFAM: TonB family protein; KEGG: rso:RSc2778 hypothetical protein YP_002982556.1 PFAM: ribonuclease II; KEGG: rso:RSc2779 hypothetical protein YP_002982557.1 PFAM: Chorismate lyase; KEGG: rso:RSc2780 hypothetical protein YP_002982558.1 PFAM: protein of unknown function UPF0227; KEGG: rso:RSc2781 hypothetical protein YP_002982559.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rso:RSc2782 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein YP_002982560.1 KEGG: rso:RSc2783 hypothetical protein YP_002982561.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rso:RSc2784 thioredoxin-related transmembrane protein YP_002982563.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002982564.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002982565.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002982566.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002982567.1 KEGG: rso:RSc2789 hypothetical protein YP_002982568.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002982569.1 PFAM: PfkB domain protein; KEGG: rso:RSc2791 sugar kinase transferase protein YP_002982570.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc2792 outer membrane lipoprotein transmembrane YP_002982571.1 KEGG: rso:RSc2793 histone H1 protein YP_002982572.1 KEGG: rso:RSc2796 hemagglutinin-related transmembrane protein YP_002982573.1 KEGG: rso:RSc2797 hemagglutinin-related transmembrane protein YP_002982574.1 KEGG: rso:RSc2798 signal peptide protein YP_002982575.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: rso:RSc2799 methyl-accepting chemotaxis transmembrane protein YP_002982576.1 KEGG: rso:RSc2800 hypothetical protein YP_002982577.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc2802 hypothetical protein YP_002982578.1 KEGG: rso:RSc2803 hypothetical protein YP_002982579.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002982580.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002982581.1 KEGG: reu:Reut_B4286 hypothetical protein YP_002982582.1 KEGG: reh:H16_B1167 hypothetical protein YP_002982583.1 KEGG: reh:H16_B1166 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_002982584.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rso:RSc2806 N-acetyl-anhydromuranmyl-L-alanine amidase YP_002982585.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: rso:RSc2807 response regulator transcription regulator protein YP_002982586.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: rso:RSc2808 transmembrane sensor histidine kinase transcription regulator protein YP_002982587.1 KEGG: rso:RSc2809 hypothetical protein YP_002982588.1 PFAM: cytochrome C assembly protein; KEGG: rso:RSc2810 hypothetical protein YP_002982589.1 KEGG: rso:RSc2811 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002982590.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_002982591.1 PFAM: multiple antibiotic resistance (MarC)-related protein; integral membrane protein TerC; KEGG: rso:RSc2813 hypothetical protein YP_002982592.1 KEGG: rso:RSc2814 hypothetical protein; PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase alpha subunit YP_002982593.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2815 signal peptide protein YP_002982594.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002982595.1 hydrolyzes diadenosine polyphosphate YP_002982596.1 PFAM: protein of unknown function CNP1-like; KEGG: rso:RSc2818 lipoprotein YP_002982597.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002982598.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002982599.1 involved in the peptidyltransferase reaction during translation YP_002982600.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: rso:RSc2822 50S ribosomal protein L21 YP_002982601.1 PFAM: Polyprenyl synthetase; KEGG: rso:RSc2823 octaprenyl-diphosphate synthase YP_002982602.1 PFAM: integrase family protein; KEGG: bpd:BURPS668_3493 integrase YP_002982603.1 PFAM: protein of unknown function DUF262; KEGG: LOC100068152; similar to RAI14 YP_002982604.1 KEGG: reh:H16_A0824 hypothetical protein YP_002982606.1 KEGG: eba:ebA89 hypothetical protein YP_002982607.1 KEGG: bte:BTH_I3243 hypothetical protein YP_002982608.1 PFAM: UvrD/REP helicase; KEGG: mms:mma_1029 ATP-dependent DNA helicase YP_002982609.1 KEGG: mms:mma_1028 hypothetical protein YP_002982610.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_B1867 hypothetical protein YP_002982611.1 PFAM: IS66 Orf2 family protein; KEGG: ajs:Ajs_2917 IS66 Orf2 family protein YP_002982612.1 PFAM: transposase IS66; KEGG: bcm:Bcenmc03_6939 transposase IS66 YP_002982613.1 KEGG: mgm:Mmc1_2017 type II DNA modification enzyme YP_002982614.1 PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: mgm:Mmc1_2016 helicase domain protein YP_002982615.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: hch:HCH_03804 helicase family protein YP_002982617.1 KEGG: bps:BPSL0949 hypothetical protein YP_002982618.1 KEGG: abb:ABBFA_000724 hypothetical protein YP_002982619.1 KEGG: esa:ESA_03895 hypothetical protein YP_002982620.1 PFAM: protein of unknown function DUF1311; KEGG: atc:AGR_C_4360 hypothetical protein YP_002982623.1 KEGG: bac:BamMC406_5360 hypothetical protein YP_002982624.1 KEGG: vei:Veis_0261 hypothetical protein YP_002982625.1 KEGG: ecv:APECO1_3013 hypothetical protein YP_002982628.1 KEGG: eta:ETA_03340 GTP-binding protein YP_002982631.1 KEGG: bpa:BPP1301 DNA-binding protein YP_002982634.1 KEGG: bma:BMA1027 outer membrane protein YP_002982636.1 KEGG: bps:BPSL0552 hypothetical protein YP_002982637.1 KEGG: pna:Pnap_4940 filamentation induced by cAMP protein Fic YP_002982638.1 KEGG: Os02g0235900; hypothetical protein YP_002982639.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bte:BTH_I2733 helix-turn-helix domain-containing protein YP_002982641.1 KEGG: reu:Reut_C5923 hypothetical protein YP_002982642.1 KEGG: reh:H16_A0824 hypothetical protein YP_002982646.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: xau:Xaut_2867 transcriptional regulator YP_002982647.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: rso:RSc2824 hypothetical protein YP_002982648.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: rso:RSc2825 type IV pilus assembly protein YP_002982649.1 PFAM: type II secretion system protein; KEGG: rso:RSc2826 fimbrial assembly transmembrane protein YP_002982650.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: rso:RSc2827 type 4 prepilin peptidase bifunctionnal: leader peptidase and N-methyltransferase transmembrane protein YP_002982651.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002982652.1 PFAM: protein of unknown function DUF1342; KEGG: rso:RSc2829 hypothetical protein YP_002982653.1 PFAM: protein of unknown function DUF329; KEGG: rso:RSc2830 hypothetical protein YP_002982654.1 PFAM: NUDIX hydrolase; KEGG: rso:RSc2831 7,8-dihydro-8-oxoguanine-triphosphatase YP_002982655.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: rso:RSc2832 hypothetical protein YP_002982656.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002982657.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002982658.1 PFAM: peptidase M23; KEGG: rso:RSc2835 transmembrane protein YP_002982659.1 PFAM: protein of unknown function DUF721; KEGG: rso:RSc2836 hypothetical protein YP_002982660.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002982661.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rso:RSc2838 type 2 peroxiredoxin protein YP_002982662.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002982663.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: rso:RSc2840 cell division protein FtsA YP_002982664.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: rso:RSc2841 cell division transmembrane protein YP_002982665.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002982666.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002982667.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002982668.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rso:RSc2845 cell division FtsW transmembrane protein YP_002982669.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002982670.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002982671.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: rso:RSc2848 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase protein YP_002982672.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002982673.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rso:RSc2850 penicillin-binding 3 precursor PBP-3 transmembrane protein YP_002982674.1 TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: rso:RSc2851 cell division FtsL transmembrane protein YP_002982675.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rso:RSc2852 S-adenosyl-methyltransferase MraW YP_002982676.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002982677.1 KEGG: rso:RSc2854 hypothetical protein YP_002982678.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2855 outer membrane porin signal peptide protein YP_002982679.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc2856 metabolite transport protein YP_002982680.1 PFAM: Class I peptide chain release factor; KEGG: sml:Smlt0221 peptidyl-tRNA hydrolase YP_002982681.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: reu:Reut_B5210 HylII YP_002982682.1 activates fatty acids by binding to coenzyme A YP_002982683.1 KEGG: rso:RSc2858 zinc protease protein YP_002982684.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: rso:RSc2859 oxidoreductase protein YP_002982685.1 KEGG: rso:RSc2860 transcription regulation repressor transcription regulator protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_002982686.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoryl transfer system HPr; KEGG: rso:RSc2861 multiphosphoryl transfer protein YP_002982687.1 KEGG: rso:RSc2862 1-phosphofructokinase protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_002982688.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; phosphotransferase system EIIC; KEGG: rso:RSc2863 PTS system, fructose-specific IIBC component (EIIBC-fru) (fructose-permease IIBC component) transmembrane protein YP_002982689.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc2864 Leu/Ile/Val-binding signal peptide protein YP_002982690.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_2527 Acetylornithine deacetylase / acetylornithine deacetylase ArgE. Metallo peptidase. MEROPS family M20A YP_002982691.1 KEGG: rso:RSc2871 hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002982692.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002982693.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002982694.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rso:RSc2874 phenylacetic acid degradation protein YP_002982695.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: rso:RSc2875 phenylacetyl-CoA-ligase protein YP_002982696.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rso:RSc2876 membrane-bound lytic murein transglycosylase A transmembrane protein YP_002982697.1 KEGG: rso:RSc2877 hypothetical protein YP_002982698.1 protein associated with Co2+ and Mg2+ efflux YP_002982699.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002982700.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc2880 phosphoglycolate phosphatase YP_002982701.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002982702.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002982703.1 KEGG: rso:RSc2883 signal peptide protein YP_002982704.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002982705.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002982706.1 PFAM: adenylate cyclase; KEGG: rso:RSc2886 hypothetical protein YP_002982707.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002982708.1 PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: rso:RSc2889 hypothetical protein YP_002982709.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: rso:RSc2890 hypothetical protein YP_002982710.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc2891 oxidoreductase protein YP_002982711.1 KEGG: rso:RSc2892 thiol:disulfide interchange protein YP_002982712.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rso:RSc2893 hypothetical protein YP_002982713.1 KEGG: rso:RSc2894 hypothetical protein YP_002982714.1 KEGG: rso:RSc2895 signal peptide protein YP_002982715.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2896 hypothetical protein YP_002982716.1 PFAM: flagellar export chaperone; KEGG: rso:RSc2897 hypothetical protein YP_002982717.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002982718.1 KEGG: bpy:Bphyt_7324 integrase family protein YP_002982719.1 KEGG: reh:PHG054 hypothetical protein YP_002982720.1 KEGG: bph:Bphy_7605 hypothetical protein YP_002982721.1 KEGG: reh:PHG052 hypothetical protein YP_002982722.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bmj:BMULJ_03712 phthalate dioxygenase oxygenase YP_002982723.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bmu:Bmul_4806 oxidoreductase domain-containing protein YP_002982724.1 KEGG: bmu:Bmul_4808 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_002982725.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmu:Bmul_4809 MarR family transcriptional regulator YP_002982726.1 PFAM: porin Gram-negative type; KEGG: bmj:BMULJ_03732 outer membrane porin YP_002982727.1 KEGG: bmj:BMULJ_03707 4,5-dihydroxyphthalate decarboxylase YP_002982728.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_4267 D-galactonate transporter YP_002982729.1 PFAM: ferredoxin; oxidoreductase FAD-binding protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: bmj:BMULJ_03705 FAD/NAD(P)-binding oxidoreductase YP_002982730.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation-binding protein; KEGG: bxe:Bxe_A3521 hypothetical protein YP_002982731.1 KEGG: bac:BamMC406_6697 hypothetical protein YP_002982732.1 KEGG: bsu:BSU20890 hypothetical protein YP_002982734.1 KEGG: bch:Bcen2424_0206 ATP-dependent OLD family endonuclease YP_002982735.1 KEGG: gbe:GbCGDNIH1_1179 DNA helicase II YP_002982736.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: bpy:Bphyt_1284 multi-sensor signal transduction histidine kinase YP_002982737.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ppw:PputW619_1795 response regulator receiver protein YP_002982738.1 KEGG: bph:Bphy_0992 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein YP_002982739.1 KEGG: rso:RSc2899 hypothetical protein YP_002982740.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002982741.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002982742.1 KEGG: rso:RSc2902 lipoprotein YP_002982743.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: rso:RSc2903 methyltransferase protein YP_002982744.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rso:RSc2904 hypothetical protein YP_002982745.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_002982746.1 KEGG: rso:RSc2906 hypothetical protein YP_002982747.1 KEGG: rso:RSc2907 signal peptide protein YP_002982748.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_002982749.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_002982750.1 KEGG: rso:RSc2910 signal peptide protein YP_002982751.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc2911 hypothetical protein YP_002982752.1 SMART: zinc finger CDGSH-type domain protein; KEGG: rso:RSc2912 hypothetical protein YP_002982753.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002982754.1 TIGRFAM: cytochrome O ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: rso:RSc2914 transmembrane cytochrome O ubiquinol oxidase subunit IV YP_002982755.1 TIGRFAM: cytochrome O ubiquinol oxidase, subunit III; PFAM: cytochrome C oxidase subunit III; KEGG: rso:RSc2915 transmembrane cytochrome O ubiquinol oxidase (subunit III) oxidoreductase protein YP_002982756.1 KEGG: rso:RSc2916 transmembrane cytochrome O ubiquinol oxidase subunit I; TIGRFAM: cytochrome O ubiquinol oxidase, subunit I; PFAM: cytochrome C oxidase subunit I YP_002982757.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome C oxidase subunit II; KEGG: rso:RSc2917 transmembrane cytochrome O ubiquinol oxidase subunit II YP_002982759.1 PFAM: natural resistance-associated macrophage protein; KEGG: rso:RSp0027 manganese transport transmembrane protein YP_002982760.1 KEGG: rso:RS02001 hypothetical protein YP_002982761.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_002982762.1 PFAM: integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit YP_002982763.1 KEGG: bur:Bcep18194_A4496 hypothetical protein YP_002982767.1 KEGG: pfo:Pfl01_2418 hypothetical protein YP_002982770.1 PFAM: protein of unknown function DUF159; KEGG: mpt:Mpe_A1934 hypothetical protein YP_002982773.1 KEGG: bcm:Bcenmc03_6925 hypothetical protein YP_002982775.1 KEGG: pol:Bpro_2508 hypothetical protein YP_002982782.1 KEGG: bpm:BURPS1710b_2784 hypothetical protein YP_002982783.1 KEGG: bur:Bcep18194_C6533 hypothetical protein YP_002982785.1 KEGG: proteophosphoglycan ppg4 YP_002982787.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: rle:pRL80138 conjugal transfer protein TrbJ YP_002982792.1 KEGG: bav:BAV0381 plasmid-related protein YP_002982793.1 KEGG: abo:ABO_2067 hypothetical protein YP_002982796.1 PFAM: integrase family protein; KEGG: bch:Bcen2424_0446 phage integrase family protein YP_002982797.1 PFAM: Stringent starvation protein B; KEGG: rso:RSc2925 ClpXP protease specificity-enhancing factor YP_002982798.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2926 transcription modulator protein YP_002982799.1 PFAM: cytochrome C1; KEGG: rso:RSc2927 cytochrome C1 precursor transmembrane protein YP_002982800.1 PFAM: cytochrome b/b6 domain; KEGG: rso:RSc2928 cytochrome b subunit transmembrane protein YP_002982801.1 KEGG: rso:RSc2929 transmembrane ubiquinol-cytochrome C reductase (iron-sulfur subunit) oxidoreductase protein; TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_002982802.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002982803.1 PFAM: protein of unknown function DUF34; KEGG: rso:RSc2931 hypothetical protein YP_002982804.1 KEGG: rso:RSc2932 HtrA-like serine protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002982805.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2933 porin signal peptide protein YP_002982806.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2934 hypothetical protein YP_002982807.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc2935 response regulator transcription regulator protein YP_002982808.1 PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc2936 transmembrane sensor kinase transcription regulator protein YP_002982809.1 PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc2937 periplasmic iron-binding signal peptide protein YP_002982810.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2938 transmembrane ABC transporter protein YP_002982811.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2939 ABC transporter ATP-binding protein YP_002982812.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rso:RSc2940 sec-independent translocase protein TatC transmembrane YP_002982813.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rso:RSc2941 sec-independent translocase YP_002982814.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002982815.1 KEGG: rso:RSc2943 hypothetical protein YP_002982816.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002982817.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002982818.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002982819.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002982820.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002982821.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rso:RSc2949 hypothetical protein YP_002982822.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002982823.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002982824.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002982825.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002982826.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002982827.1 PFAM: BolA family protein; KEGG: rso:RSc2954 hypothetical protein YP_002982828.1 PFAM: ABC transporter; KEGG: rso:RSc2955 hypothetical protein YP_002982829.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2956 ABC transporter ATP-binding protein YP_002982830.1 KEGG: rso:RSc2957 signal peptide protein YP_002982831.1 PFAM: toluene tolerance family protein; KEGG: rso:RSc2958 signal peptide protein YP_002982832.1 PFAM: VacJ family lipoprotein; KEGG: rso:RSc2959 lipoprotein precursor (VacJ) transmembrane YP_002982833.1 PFAM: mammalian cell entry related domain protein; KEGG: rso:RSc2960 signal peptide protein YP_002982834.1 PFAM: protein of unknown function DUF140; KEGG: rso:RSc2961 hypothetical protein YP_002982835.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc2962 ABC transporter ATP-binding protein YP_002982836.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc2963 hypothetical protein YP_002982837.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002982838.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: rso:RSc2965 glutamate synthase (large subunit) oxidoreductase protein YP_002982839.1 PFAM: protein of unknown function DUF1568; KEGG: rso:RSc2966 hypothetical protein YP_002982840.1 PFAM: OmpW family protein; KEGG: rso:RSc2967 outer membrane signal peptide protein YP_002982841.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002982842.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002982843.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002982844.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: rso:RSc2971 fimbrial type-4 assembly signal peptide protein YP_002982845.1 PFAM: pilus assembly protein PilP; KEGG: rso:RSc2972 fimbrial type-4 assembly lipoprotein YP_002982846.1 PFAM: pilus assembly protein PilO; KEGG: rso:RSc2973 fimbrial type-4 assembly membrane transmembrane protein YP_002982847.1 PFAM: fimbrial assembly family protein; KEGG: rso:RSc2974 fimbrial type-4 assembly membrane transmembrane protein YP_002982848.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: rso:RSc2975 fimbrial type-4 assembly protein YP_002982849.1 KEGG: rso:RSc2976 penicillin-binding 1 transmembrane protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_002982850.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_002982851.1 KEGG: rso:RSc2978 proline-rich transmembrane protein YP_002982852.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rso:RSc2979 diaminopimelate decarboxylase protein YP_002982853.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_002982854.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002982855.1 KEGG: rso:RSc2982 hypothetical protein YP_002982856.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rso:RSc2983 RNA polymerase sigma-E factor (sigma-24) transcription regulator protein YP_002982857.1 PFAM: Secreted repeat of unknown function; KEGG: rso:RSc2984 hypothetical protein YP_002982858.1 TIGRFAM: cytochrome C-type biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: rso:RSc2985 transmembrane cytochrome C-type biogenesis transmembrane protein YP_002982859.1 PFAM: ResB family protein; KEGG: rso:RSc2986 cytochrome C-type biogenesis transmembrane protein YP_002982860.1 PFAM: cytochrome C class I; KEGG: rso:RSc2987 oxidoreductase cytochrome C-type signal peptide protein YP_002982861.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002982862.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002982863.1 PFAM: cytochrome C biogenesis protein transmembrane region; Thioredoxin domain; KEGG: rso:RSc2990 thiol:disulfide interchange transmembrane protein YP_002982864.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: rso:RSc2991 periplasmic divalent cation tolerance protein YP_002982865.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002982866.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002982867.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002982868.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002982869.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002982870.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002982871.1 TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: bpy:Bphyt_3623 translation initiation factor IF-1 YP_002982872.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002982873.1 late assembly protein YP_002982874.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002982875.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002982876.1 binds 5S rRNA along with protein L5 and L25 YP_002982877.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002982878.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002982879.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002982880.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002982881.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002982882.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002982883.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002982884.1 one of the stabilizing components for the large ribosomal subunit YP_002982885.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002982886.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002982887.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002982888.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002982889.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002982890.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002982891.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002982892.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002982893.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002982894.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002982895.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002982896.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002982897.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002982898.1 PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_0871 major facilitator transporter YP_002982899.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cps:CPS_3497 LysR family transcriptional regulator YP_002982900.1 KEGG: rso:RSc3025 ATP-dependent DNA helicase protein; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; SMART: DEAD-like helicases ; helicase domain protein; HRDC domain protein YP_002982901.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: rso:RSc3026 hypothetical protein YP_002982902.1 KEGG: rso:RSc3027 signal peptide protein YP_002982903.1 KEGG: rso:RSc3028 signal peptide protein YP_002982904.1 KEGG: rso:RSc3029 signal peptide protein YP_002982905.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin; KEGG: rso:RSc3030 signal peptide protein YP_002982906.1 PFAM: protein of unknown function DUF1175; KEGG: rso:RSc3031 hypothetical protein YP_002982907.1 KEGG: rso:RSc3032 hypothetical protein YP_002982908.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002982909.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002982910.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002982911.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002982912.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002982913.1 binds directly to 23S ribosomal RNA YP_002982914.1 Modulates Rho-dependent transcription termination YP_002982915.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002982916.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002982917.1 PFAM: transposase IS66; KEGG: bcm:Bcenmc03_6939 transposase IS66 YP_002982918.1 PFAM: IS66 Orf2 family protein; KEGG: ajs:Ajs_2917 IS66 Orf2 family protein YP_002982919.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_B1867 hypothetical protein YP_002982920.1 PFAM: CHAD domain containing protein; KEGG: rso:RSc3043 hypothetical protein YP_002982921.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: rso:RSc3044 glycerol-3-phosphate regulon repressor transcription regulator protein YP_002982922.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_002982923.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rso:RSc3046 sugar-phosphate ATP-binding ABC transporter protein YP_002982924.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rso:RSc3047 ABC transporter ATP-binding protein YP_002982925.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3048 sugar-phosphate transmembrane ABC transporter protein YP_002982926.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3049 transmembrane ABC transporter protein YP_002982927.1 KEGG: rso:RSc3050 hypothetical protein YP_002982928.1 KEGG: rso:RSc3051 signal peptide protein YP_002982929.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rso:RSc3052 ATP:glycerol 3-phosphotransferase protein YP_002982930.1 KEGG: rso:RSc3053 signal peptide protein YP_002982931.1 PFAM: protein of unknown function DUF1415; KEGG: rso:RSc3054 hypothetical protein YP_002982932.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_002982933.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: rso:RSc3058 mannose-6-phosphate isomerase protein YP_002982934.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc3059 sugar transporter transmembrane protein YP_002982935.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc3061 substrate-binding periplasmic (PBP) ABC transporter protein YP_002982936.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc3062 transcription regulator protein YP_002982937.1 KEGG: bvi:Bcep1808_4988 alpha/beta hydrolase-like protein YP_002982938.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_4760 transcriptional regulator, XRE family YP_002982939.1 PFAM: PepSY-associated TM helix domain protein; KEGG: rso:RSc3067 hypothetical protein YP_002982940.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0662 transcriptional regulator, RpiR family YP_002982941.1 PFAM: porin Gram-negative type; KEGG: cti:RALTA_A0042 outer membrane porin YP_002982942.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc3068 hypothetical protein YP_002982943.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc3069 transporter transmembrane protein YP_002982944.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc3070 glutathione S-transferase protein YP_002982945.1 KEGG: rso:RSc3071 hypothetical protein YP_002982946.1 KEGG: rso:RSc3072 hypothetical protein YP_002982947.1 KEGG: rso:RSc3073 hypothetical protein YP_002982948.1 KEGG: rso:RSc3074 hypothetical protein YP_002982949.1 KEGG: bcj:BCAM1223 hypothetical protein YP_002982950.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rso:RSc3077 hypothetical protein YP_002982951.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc3078 response regulator transcription regulator protein YP_002982952.1 KEGG: rso:RSc3079 composite two component sensor histidine kinase and response regulator hybrid transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; extracellular solute-binding protein family 3; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; extracellular solute-binding protein family 3; PAC repeat-containing protein; PAS domain containing protein YP_002982953.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cti:RALTA_A3198 cyclohexanone monooxygenase, flavin-containing monooxygenase (FMO) YP_002982954.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A3741 short chain dehydrogenase YP_002982955.1 PFAM: alpha/beta hydrolase fold; KEGG: cti:RALTA_A3200 enzyme, alpha/beta hydrolase fold YP_002982956.1 KEGG: rme:Rmet_3601 FF domain protein YP_002982957.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rso:RSc3080 transcription regulator protein YP_002982958.1 PFAM: protein of unknown function DUF811; KEGG: rso:RSc3082 hypothetical protein YP_002982959.1 PFAM: protein of unknown function DUF811; KEGG: bxe:Bxe_A1322 exported lipoprotein YP_002982960.1 KEGG: rso:RSc3083 signal peptide protein YP_002982961.1 PFAM: cytochrome C class I; KEGG: rso:RSc3084 hypothetical protein YP_002982962.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002982963.1 PFAM: high potential iron-sulfur protein; KEGG: rso:RSc3086 high iron-sulfur signal peptide protein YP_002982964.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc3087 response regulator transcription regulator protein YP_002982965.1 PFAM: conserved hypothetical protein; KEGG: rso:RSc3088 signal peptide protein YP_002982966.1 PFAM: porin Gram-negative type; KEGG: rso:RSc3091 outer membrane porin signal peptide protein YP_002982967.1 KEGG: rso:RSc3092 signal peptide protein YP_002982968.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bph:Bphy_4727 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_002982969.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: cti:RALTA_B0901 xanthine dehydrogenase , with FAD-binding domain YP_002982970.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bxe:Bxe_B2224 2Fe-2S ferredoxin YP_002982971.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_002982972.1 PFAM: Domain of unknown function DUF1835; KEGG: rso:RSc3094 hypothetical protein YP_002982973.1 transport system that facilitates potassium-efflux YP_002982974.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rso:RSc3097 NAD(P)H oxidoreductase (NAD(P)H dehydrogenase (quinone)) oxidoreductase protein YP_002982975.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3098 hypothetical protein YP_002982976.1 KEGG: rso:RSc3099 signal peptide protein YP_002982977.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: aav:Aave_0037 peptidoglycan-binding LysM YP_002982978.1 KEGG: bac:BamMC406_2265 hypothetical protein YP_002982979.1 KEGG: bur:Bcep18194_A5513 hypothetical protein YP_002982981.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RSc3102 transcription regulator protein YP_002982982.1 KEGG: rso:RSc3103 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002982983.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 calcium binding signal peptide protein YP_002982984.1 KEGG: rso:RSc3105 general secretion pathway related transmembrane protein YP_002982985.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RSc3106 general secretion pathway G transmembrane protein YP_002982986.1 TIGRFAM: general secretion pathway protein H; KEGG: rso:RSc3107 general secretory pathway H transmembrane protein YP_002982987.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rso:RSc3108 general secretory pathway I transmembrane protein YP_002982988.1 KEGG: rso:RSc3109 general secretory pathway J transmembrane protein YP_002982989.1 PFAM: general secretion pathway protein K; KEGG: rso:RSc3110 general secretory pathway K transmembrane protein YP_002982990.1 PFAM: general secretion pathway L; KEGG: rso:RSc3111 general secretory pathway L transmembrane protein YP_002982991.1 PFAM: general secretion pathway M protein; KEGG: rso:RSc3112 general secretory pathway M transmembrane protein YP_002982992.1 KEGG: rso:RSc3113 general secretory pathway N transmembrane protein YP_002982993.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rso:RSc3114 general secretory pathway D transmembrane protein YP_002982994.1 KEGG: rso:RSc3115 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_002982995.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rso:RSc3116 general secretory pathway F transmembrane protein YP_002982996.1 PFAM: integrase catalytic region; KEGG: rme:Rmet_6282 integrase, catalytic region YP_002982997.1 KEGG: bte:BTH_II1692 hypothetical protein YP_002982998.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_002982999.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_002983000.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rso:RSc3131 D-lactate dehydrogenase YP_002983001.1 KEGG: reh:H16_A3548 predicted HD phosphohydrolase YP_002983002.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: reu:Reut_A0894 cyclic nucleotide-binding YP_002983003.1 KEGG: rso:RSc3135 hypothetical protein YP_002983004.1 PFAM: porin Gram-negative type; KEGG: rso:RSc2933 porin signal peptide protein YP_002983005.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bpy:Bphyt_6866 two component transcriptional regulator, LuxR family YP_002983006.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSc3136 methyl-accepting chemotaxis transmembrane protein YP_002983007.1 KEGG: rso:RSc3137 hypothetical protein YP_002983009.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3138 oxidoreductase protein YP_002983010.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RSc3139 transcription regulator protein YP_002983011.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bam:Bamb_2835 two component LuxR family transcriptional regulator YP_002983012.1 KEGG: rso:RSc3140 serine protease protein YP_002983013.1 KEGG: rso:RSc3141 lipoprotein transmembrane YP_002983014.1 PFAM: regulatory protein TetR; KEGG: bbr:BB2329 TetR family transcriptional regulator YP_002983015.1 PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2330 membrane efflux protein YP_002983016.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: rso:RSc3142 transport transmembrane protein YP_002983017.1 KEGG: bvi:Bcep1808_1534 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002983019.1 PFAM: amino acid permease-associated region; KEGG: reu:Reut_B4004 amino acid permease-associated region YP_002983020.1 KEGG: bam:Bamb_6391 hypothetical protein YP_002983021.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_002983022.1 PFAM: chaperonin Cpn10; KEGG: bmj:BMULJ_03266 chaperonin GroES YP_002983023.1 KEGG: bmj:BMULJ_03265 dihydroxyacid dehydratase/phosphogluconate dehydratase YP_002983024.1 PFAM: heat shock protein Hsp20; KEGG: bmv:BMASAVP1_A0343 HSP20 family protein YP_002983025.1 PFAM: heat shock protein Hsp20; KEGG: bpd:BURPS668_3388 HSP20 family protein YP_002983026.1 KEGG: bpl:BURPS1106A_3421 hypothetical protein YP_002983027.1 KEGG: bte:BTH_I0935 hypothetical protein YP_002983028.1 KEGG: bpy:Bphyt_2961 hypothetical protein YP_002983029.1 PFAM: peptidase C39 bacteriocin processing; KEGG: bxe:Bxe_A1024 peptidase YP_002983030.1 KEGG: bpy:Bphyt_2959 hypothetical protein YP_002983031.1 KEGG: bpy:Bphyt_2958 conserved hypothetical signal peptide protein YP_002983032.1 KEGG: bte:BTH_I0930 hypothetical protein YP_002983033.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: afe:Lferr_0114 alpha/beta hydrolase fold-3 domain protein YP_002983034.1 PFAM: ethyl tert-butyl ether degradation EthD; KEGG: reu:Reut_B5694 ethyl tert-butyl ether degradation EthD YP_002983037.1 PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: rso:RS02614 transcription regulator protein YP_002983038.1 PFAM: OsmC family protein; KEGG: rso:RSp1107 organic hydroperoxide resistance protein YP_002983039.1 KEGG: rso:RSc0639 heat shock protein YP_002983040.1 KEGG: bph:Bphy_7370 hypothetical protein YP_002983041.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RS03915 thiol:disulfide interchange protein YP_002983042.1 KEGG: rso:RS03914 lipoprotein YP_002983043.1 KEGG: rso:RS03913 signal peptide protein YP_002983044.1 KEGG: rso:RSc3434 hypothetical protein YP_002983045.1 KEGG: ava:Ava_4685 hypothetical protein YP_002983046.1 KEGG: tye:THEYE_A0519 hypothetical protein YP_002983048.1 KEGG: fal:FRAAL1724 hypothetical protein YP_002983049.1 KEGG: fal:FRAAL1725 hypothetical protein YP_002983050.1 KEGG: pde:Pden_3325 hypothetical protein YP_002983052.1 KEGG: sty:STY2069 hypothetical protein YP_002983053.1 KEGG: reu:Reut_A2198 hypothetical protein YP_002983054.1 PFAM: protein of unknown function DUF1484; KEGG: reu:Reut_A2197 hypothetical protein YP_002983055.1 KEGG: rso:RSc0965 hypothetical protein YP_002983056.1 PFAM: transcriptional activator Ogr/delta; KEGG: reu:Reut_A2195 phage transcriptional activator, Ogr/delta YP_002983058.1 KEGG: rso:RSc0963 hypothetical protein YP_002983059.1 PFAM: Prophage CP4-57 regulatory; KEGG: reu:Reut_A2193 prophage CP4-57 regulatory YP_002983060.1 KEGG: reu:Reut_A2192 hypothetical protein YP_002983061.1 PFAM: integrase family protein; KEGG: rso:RSc1871 integrase prophage protein YP_002983062.1 PFAM: 5'-nucleotidase; KEGG: rso:RSc3253 sulfur oxidation signal peptide protein YP_002983063.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc3254 hypothetical protein YP_002983064.1 KEGG: rso:RSc3255 hypothetical protein YP_002983065.1 KEGG: rso:RSc3256 hypothetical protein YP_002983066.1 PFAM: Domain of unknown function DUF1791; KEGG: rso:RSc3257 signal peptide protein YP_002983067.1 PFAM: sulfur oxidation protein SoxZ; KEGG: rso:RSc3258 hypothetical protein YP_002983068.1 KEGG: rso:RSc3259 hypothetical protein YP_002983069.1 PFAM: cytochrome C class I; KEGG: rso:RSc3260 cytochrome C transmembrane protein YP_002983070.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc3261 hypothetical protein YP_002983071.1 PFAM: Flavocytochrome C sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc3262 sulfide dehydrogenase flavocytochrome C oxidoreductase protein YP_002983072.1 KEGG: rso:RSc3263 signal peptide protein YP_002983073.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: rso:RSc3264 signal peptide protein YP_002983074.1 PFAM: protein of unknown function UPF0102; KEGG: rso:RSc3265 hypothetical protein YP_002983075.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc3266 hypothetical protein YP_002983076.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rso:RSc3267 lipoprotein YP_002983077.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc3268 hypothetical protein YP_002983078.1 KEGG: rso:RSc3269 hypothetical protein YP_002983079.1 KEGG: rso:RSc3270 hypothetical protein YP_002983080.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: rso:RSc3271 arsenate reductase oxidoreductase protein YP_002983081.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002983082.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RSc3273 hypothetical protein YP_002983083.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_002983084.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_002983085.1 involved in the transport of C4-dicarboxylates across the membrane YP_002983086.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RSc3276 transcription regulator protein YP_002983087.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: rso:RSc3277 hypothetical protein YP_002983088.1 KEGG: bcm:Bcenmc03_5196 hypothetical protein YP_002983089.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc3280 transcription regulator protein YP_002983090.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_002983091.1 KEGG: rso:RSc3282 hydroxypyruvate isomerase protein; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel YP_002983092.1 KEGG: rso:RSc3283 transmembrane 2-hydroxy-3-oxopropionate reductase oxidoreductase protein; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent YP_002983093.1 PFAM: MOFRL domain protein; KEGG: reh:H16_A3601 hydroxypyruvate reductase YP_002983094.1 KEGG: cti:RALTA_A3056 pyruvate kinase; tartrate degradation; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_002983095.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002983096.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc3285 Leu/Ile/Val-binding signal peptide protein YP_002983097.1 PFAM: UvrD/REP helicase; KEGG: rso:RSc3289 ATP-dependent DNA helicase REP protein YP_002983098.1 KEGG: rso:RSc3291 hypothetical protein YP_002983099.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002983100.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002983101.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002983102.1 KEGG: bte:BTH_I3252 hypothetical protein YP_002983103.1 KEGG: rso:RSc3296 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002983104.1 PFAM: integrase catalytic region; KEGG: rme:Rmet_6282 integrase, catalytic region YP_002983105.1 TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: rso:RSc3297 hypothetical protein YP_002983106.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppw:PputW619_4638 GCN5-related N-acetyltransferase YP_002983107.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_002983108.1 PFAM: sodium/hydrogen exchanger; KEGG: rso:RSc3299 hypothetical protein YP_002983109.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc3300 amino-acid transport signal peptide protein YP_002983110.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_002983111.1 PFAM: transposase mutator type; KEGG: rso:RSp0478 ISRSO7-transposase protein YP_002983112.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002983113.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002983114.1 PFAM: cupin; Cupin domain protein; KEGG: rso:RSc3304 signal peptide protein YP_002983115.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSc3307 methyl-accepting chemotaxis transmembrane protein YP_002983116.1 PFAM: fatty acid hydroxylase; KEGG: cti:RALTA_B2063 hypothetical protein YP_002983117.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc3308 transcription regulator protein YP_002983118.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc3309 glutathione S-transferase protein YP_002983119.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSc3310 phosphate ABC transporter phosphate-binding protein YP_002983120.1 KEGG: rso:RSc3311 hypothetical protein YP_002983121.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc3312 lipase protein YP_002983122.1 PFAM: CoA-binding domain protein; KEGG: rso:RSc3313 hypothetical protein YP_002983123.1 KEGG: rso:RSc3314 hypothetical protein YP_002983124.1 KEGG: rso:RSc3315 prolin-rich transmembrane protein YP_002983125.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002983126.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002983127.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002983128.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002983129.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002983130.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002983131.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002983132.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002983133.1 PFAM: ATP synthase I chain; KEGG: rso:RSc3324 hypothetical protein YP_002983134.1 KEGG: rso:RSc3325 chromosome partitioning protein ParB; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002983135.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: rso:RSc3326 chromosome partitioning protein ParA YP_002983136.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002983137.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002983138.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc3329 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002983139.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3331 short chain dehydrogenase YP_002983140.1 KEGG: rso:RSc3333 hypothetical protein YP_002983141.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc3334 transcription regulator protein YP_002983142.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: rso:RSc3335 hypothetical protein YP_002983143.1 TIGRFAM: phosphonate degradation operons associated HDIG domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: bma:BMAA0861 hypothetical protein YP_002983144.1 PFAM: cupin; KEGG: bps:BPSS1690 hypothetical protein YP_002983145.1 PFAM: protein of unknown function DUF81; KEGG: rso:RSc3337 hypothetical protein YP_002983146.1 KEGG: rso:RSc3338 hypothetical protein YP_002983147.1 KEGG: rso:RSc3339 hypothetical protein YP_002983148.1 PFAM: inner-membrane translocator; KEGG: rso:RSc3340 transmembrane ABC transporter protein YP_002983149.1 PFAM: inner-membrane translocator; KEGG: rso:RSc3341 transmembrane ABC transporter protein YP_002983150.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc3342 substrate-binding periplasmic (PBP) ABC transporter protein YP_002983151.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc3343 ABC transporter ATP-binding protein YP_002983152.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc3344 ABC transporter ATP-binding protein YP_002983153.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc3345 choline dehydrogenase lipoprotein oxidoreductase YP_002983154.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc3346 lysophospholipase protein YP_002983155.1 KEGG: rso:RSc3347 transcription regulator protein; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_002983156.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc3348 cation-transporting ATPase transmembrane protein YP_002983157.1 PFAM: heavy metal transport/detoxification protein; KEGG: rso:RSc3349 hypothetical protein YP_002983158.1 KEGG: pol:Bpro_1225 ISPsy11, transposase OrfA YP_002983159.1 PFAM: OmpW family protein; KEGG: rso:RSc3350 outer membrane W signal peptide protein YP_002983160.1 catalyzes the formation of L-proline from L-ornithine YP_002983161.1 PFAM: YhhN family protein; KEGG: rso:RSc3353 hypothetical protein YP_002983162.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RSc3354 transcription regulator protein YP_002983163.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_002983164.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_002983165.1 KEGG: rso:RSc3357 hypothetical protein YP_002983166.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cti:RALTA_A3136 response regulator, CheY family YP_002983167.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cti:RALTA_A3138 sensor hybrid histidine kinase YP_002983168.1 PFAM: nuclear protein SET; SMART: nuclear protein SET; KEGG: rso:RSc3358 hypothetical protein YP_002983169.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: rso:RSc3359 histone-like DNA-binding protein HU-beta (NS1) YP_002983170.1 KEGG: rso:RSc3360 hypothetical protein YP_002983171.1 PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B1223 hypothetical protein YP_002983172.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_002983173.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: rso:RSc3362 hypothetical protein YP_002983174.1 PFAM: 5'-nucleotidase; metallophosphoesterase; KEGG: rso:RSc3363 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor transmembrane protein YP_002983175.1 blocks the formation of polar Z-ring septums YP_002983176.1 TIGRFAM: septum site-determining protein MinD; PFAM: cobyrinic acid ac-diamide synthase; KEGG: rso:RSc3365 septum site-determining protein MinD YP_002983177.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002983178.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: citrate synthase; regulatory protein MerR; KEGG: dac:Daci_4908 citrate synthase YP_002983179.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc3367 hypothetical protein YP_002983180.1 PFAM: protein of unknown function DUF519; KEGG: rso:RSc3368 hypothetical protein YP_002983181.1 PFAM: protein of unknown function DUF344; KEGG: bph:Bphy_3855 hypothetical protein YP_002983182.1 PFAM: phosphate transporter; KEGG: bur:Bcep18194_B0357 phosphate transporter YP_002983183.1 PFAM: acylphosphatase; KEGG: rso:RSc3370 hypothetical protein YP_002983184.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc3371 transmembrane ABC transporter protein YP_002983185.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rso:RSc3372 ABC transporter ATP-binding protein YP_002983186.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export YP_002983187.1 PFAM: dienelactone hydrolase; KEGG: reu:Reut_B5814 hypothetical protein YP_002983188.1 KEGG: rme:Rmet_3866 chromate resistance signal peptide protein YP_002983189.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: chromate transporter; KEGG: reu:Reut_A1521 chromate transporter YP_002983190.1 KEGG: rso:RSc3375 hypothetical protein YP_002983191.1 PFAM: protein of unknown function DUF1311; KEGG: ccr:CC_2991 hypothetical protein YP_002983192.1 SMART: regulatory protein ArsR; KEGG: rso:RSp1129 arsenical resistance operon repressor transcription regulator protein YP_002983193.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: rso:RSp1128 arsenate reductase (arsenical PUMP modifier) protein YP_002983194.1 PFAM: major intrinsic protein; KEGG: rso:RS05492 transmembrane ABC transporter protein YP_002983195.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1760 alpha/beta hydrolase fold YP_002983196.1 KEGG: mlo:mll4534 hypothetical protein YP_002983197.1 KEGG: rso:RSc3434 hypothetical protein YP_002983198.1 KEGG: pfl:PFL_5498 cytoplasmic protein YP_002983199.1 KEGG: bpy:Bphyt_0466 periplasmic protein YP_002983200.1 PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_B2571 amino acid transporter-like YP_002983202.1 PFAM: UspA domain protein; KEGG: rme:Rmet_5647 UspA YP_002983203.1 KEGG: rso:RSc3379 transmembrane protein YP_002983204.1 KEGG: rso:RSc3380 signal peptide protein YP_002983205.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002983206.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002983207.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_002983208.1 PFAM: osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc3385 two-component sensor kinase KdpD transcription regulator protein YP_002983209.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc3386 outermembrane signal peptide protein YP_002983210.1 PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver; KEGG: rso:RSc3387 two-component response regulator transcription regulator protein YP_002983211.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc3388 two-component response regulator transcription regulator protein YP_002983212.1 PFAM: major intrinsic protein; KEGG: reh:H16_A3690 glycerol uptake facilitator or related permease YP_002983213.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0898 ATP-binding protein YP_002983214.1 SMART: helix-turn-helix domain protein; KEGG: bcm:Bcenmc03_4092 XRE family transcriptional regulator YP_002983215.1 PFAM: isochorismatase hydrolase; KEGG: yen:YE2398 hypothetical protein YP_002983216.1 PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1483 hypothetical protein YP_002983217.1 PFAM: porin Gram-negative type; KEGG: rso:RSc3390 porin signal peptide protein YP_002983218.1 KEGG: rso:RSc3391 signal peptide protein YP_002983219.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc3392 response regulator transcription regulator protein YP_002983220.1 KEGG: bxe:Bxe_B0497 histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002983221.1 KEGG: shw:Sputw3181_3921 hypothetical protein YP_002983222.1 KEGG: bpt:Bpet1645 secreted protein YP_002983223.1 KEGG: bac:BamMC406_6385 hypothetical protein YP_002983224.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc3397 hypothetical protein YP_002983225.1 PFAM: oxidoreductase FAD-binding protein; oxidoreductase FAD/NAD(P)-binding domain protein; globin; KEGG: rso:RSc3398 flavohemoprotein (hemoglobin-like) transmembrane YP_002983226.1 PFAM: NnrS family protein; KEGG: rso:RSc3399 hypothetical protein YP_002983227.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: reu:Reut_A1805 GntR family transcriptional regulator YP_002983228.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rme:Rmet_4317 alkylhydroperoxidase AhpD core YP_002983229.1 KEGG: ank:AnaeK_1617 hypothetical protein YP_002983230.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rso:RSc3400 tranporter transmembrane protein YP_002983231.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B4604 LysR family transcriptional regulator YP_002983232.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_002983233.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: bmu:Bmul_3330 hypothetical protein YP_002983234.1 KEGG: rso:RSc0320 hypothetical protein YP_002983235.1 PFAM: protein of unknown function DUF156; KEGG: rso:RS03926 hypothetical protein YP_002983236.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bte:BTH_I0180 hypothetical protein YP_002983237.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc3403 two-component sensor kinase transcription regulator protein YP_002983238.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc3404 response regulator transcription regulator protein YP_002983239.1 KEGG: cti:RALTA_B1132 conserved hypothetical protein; exported protein YP_002983240.1 PFAM: UspA domain protein; KEGG: rme:Rmet_0458 UspA YP_002983241.1 PFAM: thioesterase superfamily protein; KEGG: bid:Bind_3477 thioesterase superfamily protein YP_002983242.1 KEGG: rso:RSc0126 hypothetical protein YP_002983244.1 KEGG: bpy:Bphyt_3016 hypothetical protein YP_002983245.1 KEGG: bps:BPSL0554 hypothetical protein YP_002983246.1 KEGG: rso:RSc3434 hypothetical protein YP_002983247.1 KEGG: dge:Dgeo_1780 hypothetical protein YP_002983248.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mll2505 transcriptional regulator YP_002983249.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc0123 alcohol dehydrogenase oxidoreductase protein YP_002983250.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc0122 substrate-binding periplasmic (PBP) ABC transporter protein YP_002983251.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc0973 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002983252.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0121 oxidoreductase flavoprotein FAD YP_002983253.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RSc0114 hypothetical protein YP_002983254.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002983255.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0112 D-amino acid oxidase flavoprotein oxidoreductase YP_002983256.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_002983257.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002983258.1 PFAM: thiamine monophosphate synthase; KEGG: rso:RSc0108 thiamine-phosphate pyrophosphorylase protein YP_002983259.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc0107 hypothetical protein YP_002983260.1 KEGG: reh:H16_A0657 hypothetical protein YP_002983261.1 KEGG: reh:H16_A0658 hypothetical protein YP_002983262.1 KEGG: reh:H16_A0658 hypothetical protein YP_002983263.1 KEGG: rso:RSc0101 lipoprotein transmembrane YP_002983264.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: rso:RSc0100 bifunctional hydroxy-phosphomethylpyrimidine kinase/hydroxy-methylpyrimidine kinase YP_002983265.1 KEGG: rso:RSc0099 signal peptide protein YP_002983266.1 KEGG: rso:RSc0098 alkaline phosphatase signal peptide protein; PFAM: alkaline phosphatase; SMART: alkaline phosphatase YP_002983267.1 KEGG: rso:RSc0097 alkaline phosphatase lipoprotein transmembrane; PFAM: alkaline phosphatase; SMART: alkaline phosphatase YP_002983268.1 PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_4896 SMC protein-like protein YP_002983269.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002983270.1 PFAM: membrane protein of unknown function; KEGG: rso:RSc0092 hypothetical protein YP_002983271.1 KEGG: rso:RSc0091 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_002983272.1 PFAM: TfoX domain protein; KEGG: rso:RSc0090 hypothetical protein YP_002983273.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pfo:Pfl01_4330 pyridoxamine 5'-phosphate oxidase-like, FMN-binding YP_002983274.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rso:RSc0089 hypothetical protein YP_002983275.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0088 soluble lytic murein transglycosylase precursor transmembrane protein YP_002983276.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rso:RSc0087 NADH-ubiquinone oxidoreductase oxidoreductase protein YP_002983277.1 PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0086 hypothetical protein YP_002983278.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_002983279.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc0084 amino-acid-binding periplasmic (PBP) ABC transporter protein YP_002983280.1 PFAM: protein of unknown function DUF849; KEGG: rso:RSc0083 hypothetical protein YP_002983281.1 PFAM: aminotransferase class-III; KEGG: rso:RSc0082 hypothetical protein YP_002983282.1 PFAM: sugar isomerase (SIS); KEGG: rso:RSc0081 hypothetical protein YP_002983283.1 KEGG: rso:RSc0080 hypothetical protein YP_002983284.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: rso:RSc0078 two component response regulator transcription regulator protein YP_002983285.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rso:RSc0077 two component sensor histidine kinase transcription regulator protein YP_002983286.1 KEGG: rso:RSc0076 proline rich signal peptide protein YP_002983287.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rso:RSc0075 RNA methyltransferase (SUN protein) YP_002983288.1 PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0074 heat shock protein HtpX YP_002983289.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0073 transporter transmembrane protein YP_002983290.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002983291.1 KEGG: rso:RSc0071 hypothetical protein YP_002983292.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002983293.1 PFAM: peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: rso:RSc0069 signal peptide protein YP_002983294.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rso:RSc0068 smf protein YP_002983295.1 PFAM: Thioredoxin domain; KEGG: rso:RSc0067 thioredoxin-like protein YP_002983296.1 decatenates replicating daughter chromosomes YP_002983297.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSc0065 transcription regulator protein YP_002983298.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc0064 long-chain-fatty-acid--CoA ligase protein YP_002983299.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rso:RSc0063 rod shape-determining (RodA protein) transmembrane YP_002983300.1 KEGG: rso:RSc0062 substrate-binding transmembrane protein; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_002983301.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: rso:RSc0061 rod shape-determining MreD transmembrane protein YP_002983302.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002983303.1 functions in MreBCD complex in some organisms YP_002983304.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002983305.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002983306.1 KEGG: rso:RSc0056 lipoprotein YP_002983307.1 PFAM: dienelactone hydrolase; KEGG: rso:RSc0055 signal peptide protein YP_002983308.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002983309.1 PFAM: protein of unknown function DUF484; KEGG: rso:RSc0053 hypothetical protein YP_002983310.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002983311.1 SMART: PUA domain containing protein; KEGG: rso:RSc0051 hypothetical protein YP_002983312.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: bpl:BURPS1106A_A1741 hypothetical protein YP_002983313.1 PFAM: berberine; FAD linked oxidase domain protein; KEGG: rso:RSc0050 hypothetical protein YP_002983314.1 KEGG: rso:RSc0049 hemaggltinin-related protein YP_002983315.1 PFAM: ferric-uptake regulator; KEGG: rso:RSc0048 transcription regulator protein YP_002983316.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0047 hypothetical protein YP_002983317.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: rme:Rmet_0126 transcriptional regulators, TraR/DksA family YP_002983318.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0045 hypothetical protein YP_002983319.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc0044 substrate-binding periplasmic (PBP) ABC transporter protein YP_002983320.1 heat shock protein involved in degradation of misfolded proteins YP_002983321.1 heat shock protein involved in degradation of misfolded proteins YP_002983322.1 KEGG: cti:RALTA_B0381 hypothetical protein YP_002983323.1 PFAM: CsbD family protein; KEGG: reh:H16_B0585 hypothetical protein YP_002983324.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: rso:RSc0040 response regulator transcription regulator protein YP_002983325.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc0039 transmembrane sensor histidine kinase transcription regulator protein YP_002983326.1 PFAM: protein of unknown function DUF461; KEGG: rso:RSc0038 transmembrane protein YP_002983327.1 KEGG: rso:RSc0037 hypothetical protein YP_002983328.1 KEGG: rso:RSc0035 hypothetical protein YP_002983329.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002983330.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002983331.1 TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc0032 hypothetical protein YP_002983332.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_002983333.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rso:RSc0030 transcription regulator protein YP_002983334.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rso:RSc0029 4-aminobutyrate aminotransferase protein YP_002983335.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde Dehydrogenase; KEGG: rso:RSc0028 succinate-semialdehyde dehydrogenase oxidoreductase protein YP_002983336.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_002983337.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: rso:RSc0026 hypothetical protein YP_002983338.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: rso:RSc0024 signal peptide protein YP_002983339.1 PFAM: protein of unknown function DUF466; KEGG: rso:RSc0023 hypothetical protein YP_002983340.1 PFAM: carbon starvation protein CstA; KEGG: rso:RSc0022 carbon starvation A transmembrane protein YP_002983341.1 PFAM: Cache type 2 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RSc0021 transmembrane sensor histidine kinase transcription regulator protein YP_002983342.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bpl:BURPS1106A_A3133 LuxR family DNA-binding response regulator YP_002983343.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rme:Rmet_1840 NAD-dependent epimerase/dehydratase YP_002983344.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reu:Reut_A1428 GntR family transcriptional regulator YP_002983345.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: vei:Veis_3388 6-phosphogluconate dehydrogenase, NAD-binding YP_002983346.1 PFAM: type III effector Hrp-dependent outers; KEGG: bam:Bamb_4551 type III effector Hrp-dependent outers YP_002983347.1 PFAM: class II aldolase/adducin family protein; KEGG: bcj:BCAM2397 L-fuculose phosphate aldolase YP_002983348.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0475 major facilitator transporter YP_002983349.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc0020 hypothetical protein YP_002983350.1 KEGG: rso:RSc0019 hypothetical protein YP_002983351.1 PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSc0018 response regulator transcription regulator protein YP_002983352.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_002983353.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rso:RSc0016 D-3-phosphoglycerate dehydrogenase oxidoreductase protein YP_002983354.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: rso:RSc0015 hypothetical protein YP_002983355.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc0014 glutathione reductase oxidoreductase protein YP_002983356.1 PFAM: Patatin; KEGG: rso:RSc0013 hypothetical protein YP_002983357.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain protein; regulatory protein TetR; KEGG: rso:RSc0012 AcrAB operon repressor transcription regulator protein YP_002983358.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0011 acriflavin resistance lipoprotein A precursor YP_002983359.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSc0010 acriflavin resistance transmembrane protein YP_002983360.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0009 drug efflux lipoprotein YP_002983361.1 KEGG: pmy:Pmen_2775 DNA topoisomerase YP_002983362.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002983363.1 KEGG: bur:Bcep18194_A5683 hypothetical protein YP_002983364.1 SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: rso:RSc0006 hypothetical protein YP_002983365.1 PFAM: NUDIX hydrolase; KEGG: stp:Strop_1988 NUDIX hydrolase YP_002983367.1 KEGG: cvi:CV_0017 hypothetical protein YP_002983369.1 KEGG: xcb:XC_0128 hypothetical protein YP_002983373.1 KEGG: rso:RSc3250 signal peptide protein YP_002983374.1 KEGG: rso:RSc3249 signal peptide protein YP_002983375.1 KEGG: bcm:Bcenmc03_5690 hypothetical protein YP_002983376.1 KEGG: bvi:Bcep1808_3440 hypothetical protein YP_002983379.1 KEGG: bam:Bamb_0905 hypothetical protein YP_002983380.1 KEGG: bam:Bamb_0904 hypothetical protein YP_002983381.1 KEGG: bam:Bamb_0903 hypothetical protein YP_002983383.1 KEGG: lpp:lpp2117 hypothetical protein YP_002983384.1 KEGG: tbd:Tbd_2069 hypothetical protein YP_002983385.1 KEGG: hypothetical protein YP_002983386.1 KEGG: xcv:XCV2220 hypothetical protein YP_002983387.1 PFAM: Prophage CP4-57 regulatory; KEGG: bam:Bamb_0909 phage transcriptional regulator, AlpA YP_002983388.1 KEGG: bcj:BCAL2599 hypothetical protein YP_002983391.1 PFAM: integrase family protein; KEGG: bpm:BURPS1710b_0308 integrase or site-specific recombinase YP_002983392.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002983393.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002983394.1 PFAM: protein of unknown function DUF37; KEGG: rso:RSc0003 hypothetical protein YP_002983395.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rso:RSc0002 ribonuclease P protein component YP_002983396.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002983397.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_002983398.1 KEGG: rso:RS01759 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate hydrolase YP_002983399.1 PFAM: negative transcriptional regulator; KEGG: rso:RS01760 hypothetical protein YP_002983400.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bac:BamMC406_6182 ABC transporter YP_002983401.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bmj:BMULJ_05602 sulfonate/nitrate/taurine transport system permease YP_002983402.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS01762 acyl-CoA dehydrogenase oxidoreductase protein YP_002983403.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B0091 LysR family transcriptional regulator YP_002983404.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RSp0677 transcriptional activator MetR transcription regulator protein YP_002983405.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002983406.1 PFAM: acriflavin resistance protein; KEGG: rso:RS01779 transporter lipoprotein transmembrane YP_002983407.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rso:RS01779 transporter lipoprotein transmembrane YP_002983408.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS01780 outer membrane channel lipoprotein YP_002983409.1 KEGG: bxe:Bxe_B0444 hypothetical protein YP_002983410.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RS01781 hypothetical protein YP_002983411.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS01782 CynX-related transport transmembrane protein YP_002983412.1 KEGG: rso:RSp0666 DNA-3-methyladenine glycosylase I protein; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_002983413.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rso:RS01784 magnesium/cobalt transporter CorA YP_002983414.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS01785 transcription regulator protein YP_002983415.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS01786 transport transmembrane protein YP_002983416.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002983417.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bac:BamMC406_5978 antibiotic biosynthesis monooxygenase YP_002983418.1 KEGG: reh:H16_B0303 hypothetical protein YP_002983419.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmj:BMULJ_05672 LysR family transcriptional regulator YP_002983420.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002983421.1 KEGG: aav:Aave_4033 hypothetical protein YP_002983422.1 PFAM: acyltransferase 3; KEGG: rso:RS03732 acyltransferase transmembrane protein YP_002983423.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: rme:Rmet_3846 methyltransferase type 11 YP_002983424.1 PFAM: regulatory protein TetR; KEGG: rso:RS03754 transcription regulator protein YP_002983425.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rso:RSp0608 ferredoxin reductase protein YP_002983426.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: rso:RSp0607 phenylacetic acid degradation protein YP_002983427.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rso:RSp0606 phenylacetic acid degradation protein YP_002983428.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_002983429.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_002983430.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2411 transmembrane efflux protein YP_002983431.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSp0601 hypothetical protein YP_002983432.1 KEGG: rso:RS03879 hypothetical protein YP_002983433.1 PFAM: regulatory protein TetR; KEGG: rso:RS03880 transcription regulator protein YP_002983434.1 KEGG: reu:Reut_B4200 transmembrane protein YP_002983435.1 PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: rso:RS03881 response regulator transcription regulator protein YP_002983436.1 KEGG: bmj:BMULJ_03774 hypothetical protein YP_002983437.1 SMART: ATPase AAA; KEGG: bmj:BMULJ_03775 probable ATPase YP_002983438.1 PFAM: Integrase catalytic region; TnsA endonuclease; KEGG: bmu:Bmul_4740 integrase catalytic region YP_002983439.1 KEGG: bmj:BMULJ_03776 hypothetical protein YP_002983440.1 KEGG: rme:Rmet_5461 hypothetical protein YP_002983441.1 KEGG: bph:Bphy_6961 hypothetical protein YP_002983443.1 KEGG: bps:BPSL0566 hypothetical protein YP_002983446.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 hypothetical protein YP_002983447.1 KEGG: bac:BamMC406_4365 hypothetical protein YP_002983449.1 KEGG: mpt:Mpe_A1934 hypothetical protein YP_002983450.1 KEGG: bph:Bphy_6783 hypothetical protein YP_002983451.1 PFAM: protein of unknown function DUF347; KEGG: rme:Rmet_4979 protein of unknown function DUF347 YP_002983452.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3934 major facilitator superfamily MFS_1 YP_002983453.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rfr:Rfer_3389 alkylhydroperoxidase YP_002983454.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: shl:Shal_3552 ECF subfamily RNA polymerase sigma-24 factor YP_002983455.1 KEGG: nar:Saro_3962 hypothetical protein YP_002983456.1 KEGG: eba:ebA6447 hypothetical protein YP_002983457.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: mrd:Mrad2831_2559 cytochrome C biogenesis protein transmembrane region YP_002983458.1 PFAM: thioredoxin domain; KEGG: bbt:BBta_3389 thioredoxin (H-type,TRX-H) YP_002983460.1 KEGG: rce:RC1_1434 hypothetical protein YP_002983461.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rce:RC1_1937 LysR family transcriptional regulator protein YP_002983463.1 PFAM: copper resistance protein CopC; KEGG: bcj:BCAM0449 copper-resistance exported protein YP_002983464.1 PFAM: copper resistance D domain protein; KEGG: bpl:BURPS1106A_A0625 copper resistance protein D YP_002983465.1 KEGG: bvi:Bcep1808_3972 heavy metal translocating P-type ATPase; TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein YP_002983466.1 Involved in disulfide bond formation YP_002983467.1 PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2955 TetR family transcriptional regulator YP_002983468.1 PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: bpy:Bphyt_0426 diguanylate cyclase/phosphodiesterase YP_002983469.1 PFAM: phosphoesterase; KEGG: bpy:Bphyt_5961 phosphoesterase YP_002983470.1 PFAM: phosphoesterase; KEGG: nca:Noca_3200 phosphoesterase YP_002983471.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bxe:Bxe_B0092 chromate transporter YP_002983472.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase YP_002983473.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_002983474.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_002983475.1 KEGG: reu:Reut_B5692 4-oxalocrotonate decarboxylase; TIGRFAM: 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate hydrolase YP_002983476.1 KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase; TIGRFAM: 2-oxopent-4-enoate hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_002983477.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: reu:Reut_B5690 alpha/beta hydrolase fold YP_002983478.1 TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase YP_002983479.1 PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 hypothetical protein YP_002983480.1 TIGRFAM: catechol 2,3 dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase YP_002983481.1 PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin YP_002983482.1 PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: reu:Reut_B5685 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_002983483.1 PFAM: phenol hydroxylase; KEGG: reu:Reut_B5684 phenol hydroxylase region YP_002983484.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS YP_002983485.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM YP_002983486.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase YP_002983487.1 PFAM: phenol hydroxylase; KEGG: reu:Reut_B5680 phenol hydroxylase YP_002983488.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5679 methane/phenol/toluene hydroxylase:YHS YP_002983489.1 PFAM: toluene-4-monooxygenase system B; KEGG: reu:Reut_B5678 toluene-4-monooxygenase system B YP_002983490.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B5677 Rieske (2Fe-2S) region YP_002983491.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5676 monooxygenase component MmoB/DmpM YP_002983492.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5675 methane/phenol/toluene hydroxylase YP_002983493.1 PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: reu:Reut_B5674 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_002983494.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; activator of aromatic catabolism; SMART: ATPase AAA; KEGG: reu:Reut_B5673 helix-turn-helix, fis-type YP_002983495.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: reu:Reut_B5672 aromatic hydrocarbon degradation protein YP_002983496.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; activator of aromatic catabolism; SMART: ATPase AAA; KEGG: reu:Reut_B5671 helix-turn-helix, fis-type YP_002983497.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reu:Reut_B5670 GntR family transcriptional regulator YP_002983498.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: sen:SACE_2432 formate dehydrogenase, subunit alpha YP_002983499.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: swi:Swit_1474 NADH dehydrogenase (quinone) YP_002983500.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002983501.1 KEGG: bte:BTH_II0928 pyruvate dehydrogenase, E1 component, subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_002983502.1 PFAM: transketolase; transketolase domain protein; KEGG: bte:BTH_II0929 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit beta YP_002983503.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bte:BTH_II0930 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_002983504.1 KEGG: bph:Bphy_7032 hypothetical protein YP_002983505.1 KEGG: bpm:BURPS1710b_2475 RedA YP_002983506.1 KEGG: reu:Reut_A1215 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein YP_002983507.1 KEGG: bte:BTH_I2124 sigma 54 modulation protein YP_002983508.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: reh:H16_A1997 chaperonin GroEL (HSP60 family) YP_002983509.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002983510.1 Involved in anaerobic NO protection and iron metabolism YP_002983511.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_002983512.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002983513.1 KEGG: rso:RS02295 hypothetical protein YP_002983514.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM protein; KEGG: rso:RSp0965 ribonucleotide reductase activating transmembrane protein YP_002983515.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rso:RS02297 transcription regulator protein YP_002983516.1 PFAM: DGC domain protein; KEGG: rso:RS02298 lipoprotein YP_002983517.1 KEGG: rso:RS02299 hypothetical protein YP_002983518.1 PFAM: peptidase U32; KEGG: rso:RS02300 hypothetical protein YP_002983519.1 PFAM: peptidase U32; KEGG: rso:RS02301 protease protein YP_002983520.1 KEGG: rso:RS02303 hypothetical protein YP_002983521.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0972 nitrite/nitrate ABC transporter transmembrane protein YP_002983522.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0973 nitrite/nitrate ABC transporter transmembrane protein YP_002983523.1 PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein YP_002983524.1 TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: rso:RSp0974 respiratory nitrate reductase alpha chain oxidoreductase protein YP_002983525.1 TIGRFAM: nitrate reductase subunit beta; KEGG: rso:RSp0975 respiratory nitrate reductase oxidoreductase protein YP_002983526.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: nitrate reductase subunit delta; KEGG: rso:RSp0976 respiratory nitrate reductase oxidoreductase protein YP_002983527.1 KEGG: rso:RSp0977 respiratory nitrate reductase transmembrane protein; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: nitrate reductase subunit gamma YP_002983528.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rso:RSp0978 molybdopterin-guanine dinucleotide biosynthesis protein YP_002983529.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; GAF domain protein; KEGG: rso:RSp0979 transmembrane nitrate/nitrite sensor kinase transcription regulator protein YP_002983530.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rso:RSp0980 nitrate/nitrite response regulator transcription regulator protein YP_002983531.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: rso:RSc3159 hypothetical protein YP_002983532.1 PFAM: HI0933 family protein; KEGG: rso:RSc3158 transmembrane protein YP_002983533.1 KEGG: rso:RSc3157 hypothetical protein YP_002983534.1 KEGG: bpy:Bphyt_4938 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002983535.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rso:RS00411 aminopeptidase transmembrane protein YP_002983536.1 PFAM: nitrogen regulatory protein P-II; KEGG: rso:RS00410 P-II-like protein transcription regulator YP_002983537.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rso:RS00409 cation efflux system transmembrane protein YP_002983538.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rso:RS00408 cation efflux protein YP_002983539.1 PFAM: outer membrane efflux protein; KEGG: rso:RS00407 outer membrane cation efflux system protein YP_002983540.1 KEGG: rso:RS00406 hypothetical protein YP_002983541.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RS00403 transmembrane sensor histidine kinase transcription regulator protein YP_002983542.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RS00402 two component response regulator transcription regulator protein YP_002983543.1 KEGG: rso:RS00398 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002983544.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RS00392 hypothetical protein YP_002983545.1 KEGG: rso:RS05802 transmembrane protein YP_002983546.1 KEGG: rso:RS00391 hypothetical protein YP_002983547.1 KEGG: rso:RS00390 signal peptide protein YP_002983548.1 KEGG: rso:RSp0510 UDP-N-acetylglucosamine 2-epimerase protein; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_002983549.1 KEGG: rso:RS00388 signal peptide protein YP_002983550.1 PFAM: general secretory system II protein E domain protein; KEGG: rso:RSp0508 bacteriophage N4 adsorption protein B YP_002983551.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSp0507 methyl-accepting chemotaxis I YP_002983552.1 PFAM: 17 kDa surface antigen; KEGG: rso:RS00385 glycin-rich transmembrane protein YP_002983553.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase YP_002983554.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RSc1750 Leu/Ile/Val-binding precursor signal peptide protein YP_002983555.1 PFAM: regulatory protein TetR; KEGG: dar:Daro_3251 regulatory protein, TetR YP_002983556.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bpy:Bphyt_3530 major facilitator superfamily MFS_1 YP_002983557.1 KEGG: cti:RALTA_A0217 hypothetical protein YP_002983558.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rso:RS00365 hypothetical protein YP_002983559.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: cti:RALTA_A0216 GntR family transcriptional regulator; C-term aminotransferase motif YP_002983560.1 KEGG: rso:RS00364 hypothetical protein YP_002983561.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: bja:bll7955 enoyl-CoA hydratase/isomerase YP_002983562.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: reu:Reut_B4527 MarR family transcriptional regulator YP_002983563.1 KEGG: bac:BamMC406_4327 alpha/beta hydrolase YP_002983564.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rso:RSc1960 transcriptional regulatory DNA-binding transcription regulator protein YP_002983565.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rso:RSc1959 hypothetical protein YP_002983566.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002983567.1 PFAM: phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase YP_002983568.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6406 short chain dehydrogenase YP_002983569.1 PFAM: beta-lactamase; KEGG: reh:H16_A0853 lactamase B YP_002983570.1 KEGG: rso:RS00884 hypothetical protein YP_002983571.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0412 fosmidomycin resistance antibiotic resistance transmembrane protein YP_002983572.1 KEGG: rso:RS05307 hypothetical protein YP_002983573.1 KEGG: rso:RS00868 hypothetical protein YP_002983574.1 PFAM: protein of unknown function DUF1345; KEGG: rso:RS00867 hypothetical protein YP_002983575.1 KEGG: rso:RS00866 hypothetical protein YP_002983576.1 KEGG: rso:RS00831 signal peptide protein YP_002983577.1 KEGG: rso:RS00829 lipoprotein YP_002983578.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSp0397 phosphinothricin acetyltransferase protein YP_002983579.1 SMART: rhodanese; KEGG: rso:RS00824 hypothetical protein YP_002983580.1 PFAM: flagellar hook-length control protein; KEGG: rso:RSp0395 flagellar hook-length control protein YP_002983581.1 TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: rso:RSp0394 flagellar protein YP_002983582.1 KEGG: rso:RSp0393 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA YP_002983583.1 binds to and inhibits the function of flagella specific ATPase FliI YP_002983584.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002983585.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: rso:RSp0390 flagellar M-ring transmembrane protein YP_002983586.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002983587.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00815 hypothetical protein YP_002983588.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: cti:RALTA_B2136 glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) YP_002983589.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: cti:RALTA_B2137 CDP-glucose 4,6-dehydratase YP_002983590.1 KEGG: dol:Dole_1961 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002983591.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rlt:Rleg2_4213 glutamine--scyllo-inositol transaminase YP_002983592.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: azc:AZC_3474 phytanoil-CoA alpha hydroxylase YP_002983593.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: azc:AZC_3475 hypothetical protein YP_002983594.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_3472 acetyltransferase YP_002983595.1 PFAM: WbqC-like family protein; KEGG: azc:AZC_3473 hypothetical protein YP_002983596.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_3476 glycosyltransferase YP_002983597.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002983598.1 PFAM: OsmC family protein; KEGG: rru:Rru_A0476 OsmC-like protein YP_002983599.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS00814 transcription regulator protein YP_002983600.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00815 hypothetical protein YP_002983601.1 KEGG: rso:RSp0385 flagellar protein FliT YP_002983602.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: rso:RSp0384 flagellar protein FliS YP_002983603.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: rso:RSp0383 flagellar hook-associated protein 2 YP_002983604.1 PFAM: flagellin domain protein; KEGG: rso:RSp0382 flagellin protein YP_002983605.1 PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rso:RS00809 transcription regulator protein YP_002983606.1 KEGG: rso:RS00808 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_002983607.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_002983608.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002983609.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rso:RSp0377 flagellar motor switch protein FliN YP_002983610.1 PFAM: flagellar biosynthesis protein FliO; KEGG: rso:RSp0376 flagellar FliO transmembrane protein YP_002983611.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002983612.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_002983613.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rso:RSp0373 flagellar biosynthetic FliR transmembrane protein YP_002983614.1 KEGG: rso:RS00799 hypothetical protein YP_002983615.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rso:RS00796 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha transmembrane protein YP_002983616.1 KEGG: bph:Bphy_0691 acyl-carrier protein YP_002983617.1 carries the fatty acid chain in fatty acid biosynthesis YP_002983618.1 KEGG: rso:RS00790 hypothetical protein YP_002983619.1 PFAM: AMP-dependent synthetase and ligase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RS00787 hypothetical protein YP_002983620.1 PFAM: glycosyl transferase family 2; KEGG: rso:RS00785 hypothetical protein YP_002983621.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rso:RSp0365 histidine ammonia-lyase protein YP_002983622.1 PFAM: thioesterase superfamily protein; KEGG: rso:RS00778 hypothetical protein YP_002983623.1 KEGG: rso:RS00776 signal peptide protein YP_002983624.1 KEGG: rso:RS00775 lipoprotein transmembrane YP_002983625.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002983626.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RS00772 hypothetical protein YP_002983627.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002983628.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002983629.1 PFAM: beta-ketoacyl synthase; KEGG: rso:RSp0357 3-oxoacyl-[acyl-carrier-protein] synthase I YP_002983630.1 KEGG: rso:RS00762 signal peptide protein YP_002983631.1 KEGG: bph:Bphy_0706 excinuclease, ATPase subunit YP_002983632.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; methyltransferase; KEGG: rso:RS00761 hypothetical protein YP_002983633.1 PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; KEGG: rso:RS00759 oxidoreductase protein YP_002983634.1 PFAM: protein of unknown function DUF1275; KEGG: rso:RS00757 hypothetical protein YP_002983635.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: rso:RSp0352 flagellar hook-associated protein 3 YP_002983636.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002983637.1 KEGG: rso:RSp0350 flagellar protein FlgJ; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_002983638.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_002983639.1 PFAM: flagellar L-ring protein; KEGG: rso:RSp0348 flagellar L-ring protein precursor YP_002983640.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: rso:RSp0347 flagellar basal-body rod protein FlgG YP_002983641.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rso:RSp0346 flagellar basal-body rod protein FlgF YP_002983642.1 the hook connects flagellar basal body to the flagellar filament YP_002983643.1 PFAM: flagellar hook capping protein; KEGG: rso:RSp0344 basal-body rod modification protein FlgD YP_002983644.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: rso:RSp0343 flagellar basal-body rod protein FlgC YP_002983645.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rso:RSp0342 flagellar basal-body rod protein FlgB YP_002983646.1 required for the assembly of the flagellar basal body P-ring YP_002983647.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: rso:RSp0340 negative regulator of flagellin synthesis (anti-sigma-28 factor) protein YP_002983648.1 PFAM: FlgN family protein; KEGG: rso:RSp0339 flagella synthesis protein FlgN YP_002983649.1 PFAM: regulatory protein LuxR; LexA DNA-binding domain protein; SMART: regulatory protein LuxR; KEGG: rso:RSp0338 negative regulator of exopolysaccharide production transcription regulator protein YP_002983650.1 PFAM: porin Gram-negative type; KEGG: rso:RS00714 porin precursor transmembrane protein YP_002983651.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RS00713 transcription regulator protein YP_002983652.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 HNS-like transcription regulator protein YP_002983653.1 KEGG: rso:RS00710 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_002983654.1 KEGG: rso:RSp0333 osmotically inducible lipoprotein B2 transmembrane YP_002983655.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_002983656.1 KEGG: rso:RS05439 hypothetical protein YP_002983657.1 PFAM: OsmC family protein; KEGG: rso:RS05440 organic hydroperoxide resistance protein YP_002983658.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rso:RS05441 dehydrogenase, large chain oxidoreductase protein YP_002983659.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: rso:RS05442 dehydrogenase, small chain oxidoreductase protein YP_002983660.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rso:RSp0322 2-isopropylmalate synthase YP_002983661.1 PFAM: protein of unknown function DUF326; KEGG: rso:RS05446 hypothetical protein YP_002983662.1 KEGG: rso:RS05447 transcription regulator protein; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_002983663.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RS05448 metal-transporting P-type ATPase transmembrane protein YP_002983664.1 PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_0055 protein of unknown function DUF1234 YP_002983665.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: citrate transporter; C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: bpy:Bphyt_4090 citrate/H+ symporter, CitMHS family YP_002983666.1 PFAM: protein of unknown function DUF1446; KEGG: mrd:Mrad2831_4048 hypothetical protein YP_002983667.1 KEGG: met:M446_5609 hypothetical protein YP_002983668.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5879 LysR family transcriptional regulator YP_002983669.1 PFAM: UspA domain protein; KEGG: rso:RS05449 hypothetical protein YP_002983670.1 PFAM: protein of unknown function DUF1486; KEGG: rso:RS05451 hypothetical protein YP_002983671.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RS05452 transmembrane protein YP_002983672.1 PFAM: transcriptional regulator PadR family protein; KEGG: rso:RS05461 hypothetical protein YP_002983673.1 KEGG: azo:azo2559 conserved hypothetical secreted protein YP_002983674.1 PFAM: beta-lactamase; KEGG: rme:Rmet_5786 beta-lactamase YP_002983675.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS05463 transcription regulator protein YP_002983676.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RS05464 oxidoreductase protein YP_002983677.1 PFAM: protein of unknown function DUF1470; KEGG: rso:RS05465 hypothetical protein YP_002983678.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rso:RS05466 dehydrogenase oxidoreductase protein YP_002983679.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_0628 major facilitator superfamily MFS_1 YP_002983680.1 PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A4475 transcriptional regulator YP_002983681.1 PFAM: glutathione S-transferase domain; KEGG: rso:RS04766 hypothetical protein YP_002983682.1 TIGRFAM: methyltransferase; KEGG: bcm:Bcenmc03_5616 methyltransferase YP_002983683.1 KEGG: reu:Reut_A1768 hypothetical protein YP_002983684.1 KEGG: bph:Bphy_7087 transmembrane protein YP_002983685.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bxe:Bxe_B3007 response regulator receiver protein YP_002983686.1 KEGG: bxe:Bxe_B3009 hypothetical protein YP_002983687.1 PFAM: chemotaxis sensory transducer; KEGG: bpy:Bphyt_6985 methyl-accepting chemotaxis sensory transducer YP_002983688.1 PFAM: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAC repeat-containing protein; KEGG: bpy:Bphyt_6986 CheA signal transduction histidine kinase YP_002983689.1 PFAM: Domain of unknown function DUF1801; KEGG: rme:Rmet_1765 hypothetical protein YP_002983690.1 KEGG: bte:BTH_II1151 hypothetical protein YP_002983691.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3133 antibiotic resistance (acetyltransferase) protein YP_002983692.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pol:Bpro_3020 glutamate dehydrogenase (NAD) YP_002983693.1 KEGG: reu:Reut_B5133 hypothetical protein YP_002983694.1 KEGG: rso:RS03675 hypothetical protein YP_002983695.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_002983696.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSp0287 hemin storage signal peptide protein YP_002983697.1 KEGG: rso:RSp0286 hemin-binding outer membrane transmembrane protein YP_002983698.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS03679 transcription regulator protein YP_002983699.1 KEGG: rso:RS03680 hypothetical protein YP_002983700.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4367 L-threonine 3-dehydrogenase YP_002983701.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002983702.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_4806 transcriptional regulator, XRE family YP_002983703.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSp0283 DNA-damage-inducible F transmembrane protein YP_002983704.1 PFAM: amino acid permease-associated region; KEGG: rso:RS03682 amino-acid permease transmembrane protein YP_002983705.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bac:BamMC406_6037 LysR family transcriptional regulator YP_002983706.1 PFAM: aldo/keto reductase; KEGG: bvi:Bcep1808_6440 oxidoreductase YP_002983707.1 PFAM: Albicidin resistance; KEGG: spe:Spro_1357 MerR family transcriptional regulator YP_002983708.1 KEGG: reh:H16_B1253 predicted signal transduction protein containingan EAL and a GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002983709.1 PFAM: coagulation factor 5/8 type domain protein; WD40 domain protein beta Propeller; KEGG: rso:RS03685 signal peptide protein YP_002983711.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_002983712.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: reh:H16_B1400 transcriptional regulator CRP family YP_002983713.1 KEGG: rso:RS02107 hypothetical protein YP_002983714.1 catalyzes the interconversion of chorismate to prephenate YP_002983715.1 KEGG: rso:RS02108 protease signal peptide protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002983716.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RS02109 transmembrane two-component sensor kinase transcription regulator protein YP_002983717.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RS02110 two-component response regulator transcription regulator protein YP_002983718.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: rso:RSp1556 transcription regulation repressor HexR transcription regulator protein YP_002983719.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_002983720.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: rso:RSp1558 6-phosphogluconolactonase oxidoreductase protein YP_002983721.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002983722.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_002983723.1 PFAM: UspA domain protein; KEGG: rso:RS02117 hypothetical protein YP_002983724.1 KEGG: rso:RS02118 hypothetical protein YP_002983725.1 KEGG: rso:RS02119 hypothetical protein YP_002983726.1 PFAM: cytochrome C oxidase subunit II; cytochrome C class I; KEGG: rso:RSp1564 cytochrome C oxidase polypeptide II YP_002983727.1 KEGG: rso:RSp1565 cytochrome C oxidase polypeptide I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_002983728.1 PFAM: cytochrome C oxidase subunit III; KEGG: rso:RSp1566 cytochrome-C oxidase oxidoreductase protein YP_002983729.1 PFAM: cytochrome C oxidase subunit III; KEGG: rso:RSp1567 cytochrome-C oxidase subunit III oxidoreductase protein YP_002983730.1 KEGG: rso:RS02124 hypothetical protein YP_002983731.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rso:RS02139 hypothetical protein YP_002983732.1 PFAM: ABC transporter; response regulator receiver; ATP-binding region ATPase domain protein; ABC transporter transmembrane region; SMART: response regulator receiver; ATPase AAA; KEGG: bpt:Bpet2380 ABC transporter ATP-binding protein YP_002983733.1 KEGG: bpt:Bpet2378 hypothetical protein YP_002983734.1 PFAM: glycosyl transferase group 1; KEGG: reu:Reut_B4390 glycosyl transferase, group 1 YP_002983735.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: cti:RALTA_A0585 short-chain dehydrogenase/reductase YP_002983736.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: reu:Reut_B4387 histidinol-phosphate phosphatase YP_002983737.1 PFAM: glycosyl transferase family 9; KEGG: cti:RALTA_A0587 lipopolysaccharide heptosyltransferase, glycosyl transferase, family 9 YP_002983738.1 PFAM: carbamoyltransferase; KEGG: bph:Bphy_5247 carbamoyltransferase YP_002983739.1 PFAM: glycosyl transferase family 2; KEGG: cti:RALTA_A0589 glycosyl transferase, family 2 YP_002983740.1 PFAM: glycosyl transferase family 9; KEGG: bph:Bphy_5245 glycosyl transferase YP_002983741.1 KEGG: cti:RALTA_A0591 glycosyl transferase, group 1 YP_002983742.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: cti:RALTA_A0582 NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase; UDP-glucuronate decarboxylase 3 YP_002983743.1 PFAM: glycosyl transferase family 2; KEGG: cti:RALTA_A0580 glycosyl transferase, family 2 YP_002983744.1 PFAM: LmbE family protein; KEGG: bph:Bphy_4725 LmbE family protein YP_002983746.1 KEGG: reu:Reut_A1581 natural resistance-associated macrophage protein YP_002983747.1 KEGG: reu:Reut_B4638 hypothetical protein YP_002983748.1 KEGG: bxe:Bxe_A2030 hypothetical protein YP_002983749.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1732 short-chain dehydrogenase family protein YP_002983750.1 PFAM: acriflavin resistance protein; KEGG: rso:RS02154 transport transmembrane protein YP_002983751.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rso:RS02155 transport transmembrane protein YP_002983752.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 outer membrane drug efflux lipoprotein YP_002983753.1 KEGG: rso:RS02157 hypothetical protein YP_002983754.1 PFAM: endoribonuclease L-PSP; KEGG: bph:Bphy_5466 endoribonuclease L-PSP YP_002983755.1 PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_B0799 D-amino-acid dehydrogenase YP_002983756.1 PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: cti:RALTA_B1311 conserved hypothetical protein, DUF1485 YP_002983757.1 KEGG: cti:RALTA_B1312 amidase, hydantoinase/carbamoylase, N-carbamoyl-L-amino-acid hydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20 YP_002983758.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cti:RALTA_B1313 high-affinity branched-chain amino acid transporter (ABC superfamily, atp_bind) YP_002983759.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cti:RALTA_B1314 high-affinity branched-chain amino acid transporter (ABC superfamily, atp_bind) YP_002983760.1 PFAM: inner-membrane translocator; KEGG: cti:RALTA_B1315 branched-chain amino acid inner-membrane translocator YP_002983761.1 PFAM: inner-membrane translocator; KEGG: cti:RALTA_B1316 branched-chain amino acid inner-membrane translocator YP_002983762.1 PFAM: extracellular ligand-binding receptor; KEGG: cti:RALTA_B1317 branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_002983764.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cti:RALTA_B1318 regulatory protein, GntR YP_002983765.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_002983766.1 PFAM: carbohydrate-selective porin OprB; KEGG: rso:RSp1632 porin B precursor outer (glucose porin) transmembrane protein YP_002983767.1 TIGRFAM: D-xylose ABC transporter periplasmic substrate-binding protein; KEGG: rso:RSp1633 D-xylose-binding periplasmic ABC transporter protein YP_002983768.1 with XylFH is part of the high affinity xylose ABC transporter YP_002983769.1 PFAM: inner-membrane translocator; KEGG: rso:RSp1635 xylose transmembrane ABC transporter protein YP_002983770.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: rso:RS02194 oxidoreductase protein YP_002983771.1 KEGG: rme:Rmet_2737 hypothetical protein YP_002983772.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rso:RS02195 transcription regulator transcription regulator protein YP_002983773.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RS02196 hypothetical protein YP_002983774.1 PFAM: helix-turn-helix- domain containing protein AraC type; cupin; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS02197 transcriptional regulator transcription regulator protein YP_002983775.1 KEGG: rme:Rmet_5762 hypothetical protein YP_002983776.1 KEGG: rme:Rmet_5763 hypothetical protein YP_002983777.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS02203 transcription regulator transcription regulator protein YP_002983778.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: rso:RS02204 hypothetical protein YP_002983779.1 KEGG: rso:RS02205 transmembrane protein YP_002983780.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bte:BTH_I0059 AraC family transcription regulator YP_002983781.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: bpl:BURPS1106A_0069 acyl-CoA dehydrogenase YP_002983782.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002983783.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bte:BTH_I0062 fatty oxidation complex, subunit alpha YP_002983784.1 KEGG: reh:H16_A0025 predicted signal transduction protein containing PAS, GGDEF and EAL domains; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_002983785.1 PFAM: protein of unknown function DUF305; KEGG: rme:Rmet_5398 protein of unknown function DUF305 YP_002983786.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bph:Bphy_6260 YVTN beta-propeller repeat-containing protein YP_002983787.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: reh:H16_A1620 DnaJ-class molecular chaperone YP_002983789.1 PFAM: extracellular solute-binding protein family 1; KEGG: bph:Bphy_7218 extracellular solute-binding protein YP_002983790.1 KEGG: bph:Bphy_7217 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_002983791.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pap:PSPA7_0301 MdcR YP_002983792.1 TIGRFAM: malonate decarboxylase, subunit alpha; KEGG: pap:PSPA7_0292 malonate decarboxylase subunit alpha YP_002983793.1 catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA YP_002983794.1 TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase subunit delta; KEGG: pna:Pnap_0948 malonate decarboxylase subunit delta YP_002983795.1 The subunit beta catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_002983796.1 TIGRFAM: malonate decarboxylase, subunit gamma; PFAM: malonate decarboxylase subunit gamma; KEGG: pna:Pnap_0950 malonate decarboxylase subunit gamma YP_002983797.1 TIGRFAM: malonate transporter MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: reu:Reut_A1611 malonate transporter MadL subunit YP_002983798.1 TIGRFAM: malonate transporter MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: bcm:Bcenmc03_1240 malonate transporter MadM subunit YP_002983799.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_002983800.1 TIGRFAM: malonate decarboxylase, subunit epsilon; PFAM: acyl transferase; KEGG: pae:PA0214 acyl transferase YP_002983801.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002983802.1 KEGG: rso:RS02222 hypothetical protein YP_002983803.1 KEGG: pol:Bpro_3432 hypothetical protein YP_002983804.1 PFAM: ribonuclease BN; KEGG: rso:RS02223 ribonuclease RNase BN (RBN) transmembrane protein YP_002983805.1 KEGG: rso:RS02224 hypothetical protein YP_002983806.1 PFAM: protein of unknown function DUF1328; KEGG: rso:RS02225 hypothetical protein YP_002983807.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: rso:RS02226 sigma-54 interacting response regulator transcription regulator protein YP_002983808.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: rso:RS02227 sigma-54 interacting transcription regulator protein YP_002983809.1 KEGG: rso:RS02228 hypothetical protein YP_002983810.1 KEGG: rso:RS02229 signal peptide protein YP_002983811.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002983812.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA6934 glycosyltransferase YP_002983813.1 KEGG: rso:RS02231 hypothetical protein YP_002983814.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: eba:ebA6940 hypothetical protein YP_002983815.1 PFAM: glycosyl transferase group 1; KEGG: lch:Lcho_3607 glycosyl transferase group 1 YP_002983816.1 KEGG: rso:RS02233 hypothetical protein YP_002983817.1 PFAM: protein of unknown function UPF0118; KEGG: aav:Aave_2002 protein of unknown function UPF0118 YP_002983818.1 KEGG: rso:RS02235 composite two-component sensor kinase and response regulator hybrid transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_002983819.1 KEGG: bch:Bcen2424_4033 hypothetical protein YP_002983820.1 KEGG: rso:RS02236 prolin-rich protein YP_002983821.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: rso:RS02237 hypothetical protein YP_002983823.1 PFAM: plasmid encoded RepA protein; KEGG: rso:RSp0001 RepA replicase protein YP_002983824.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rso:RSp0002 cold shock-like transcription regulator protein YP_002983825.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: rso:RSp0003 partition protein YP_002983826.1 KEGG: rso:RSp0004 partitioning protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002983827.1 KEGG: rso:RS01977 hypothetical protein YP_002983828.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: rso:RSp0006 UTP--glucose-1-phosphate uridylyltransferase UDP-glucose pyrophosphorylase protein YP_002983829.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSp0007 alpha-ketoglutarate permease transmembrane protein YP_002983830.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSp0008 C4-dicarboxylate transport sensor kinase transcription regulator protein YP_002983831.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: rso:RSp0009 response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein YP_002983832.1 KEGG: rso:RS01982 lipoprotein transmembrane YP_002983833.1 KEGG: rso:RS01983 signal peptide protein YP_002983834.1 KEGG: rso:RS01984 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein YP_002983835.1 PFAM: extracellular ligand-binding receptor; KEGG: rso:RS01985 amino acid-binding periplasmic (PBP) ABC transporter protein YP_002983836.1 PFAM: inner-membrane translocator; KEGG: rso:RS01986 amino-acid transmembrane lipoprotein ABC transporter YP_002983837.1 PFAM: inner-membrane translocator; KEGG: rso:RS01987 amino-acid transmembrane ABC transporter protein YP_002983838.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RS01988 amino-acid ATP-binding ABC transporter protein YP_002983839.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RS01989 amino-acid ATP-binding ABC transporter protein YP_002983840.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS01990 transcriptional regulator transcription regulator protein YP_002983841.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bac:BamMC406_4513 alcohol dehydrogenase YP_002983842.1 PFAM: YCII-related; KEGG: rso:RS01991 hypothetical protein YP_002983843.1 PFAM: chloride channel core; KEGG: rso:RS01992 voltage-gated ClC-type chloride channel ClcB YP_002983844.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reu:Reut_A2876 TonB-dependent siderophore receptor YP_002983845.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; KEGG: reu:Reut_A2877 hydroxylase YP_002983846.1 KEGG: rso:RS01993 hypothetical protein YP_002983847.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: nmu:Nmul_A1613 pyruvate, water dikinase YP_002983848.1 PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_3801 TetR family transcriptional regulator YP_002983849.1 KEGG: reh:H16_B2515 prolyl aminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_002983850.1 KEGG: bcj:BCAM2757 two-component regulatory system, sensor kinase protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; histidine kinase A domain protein YP_002983851.1 PFAM: fimbrial protein; KEGG: pfl:PFL_3922 type I pilus biogenesis protein YP_002983852.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl01_3043 pili assembly chaperone YP_002983853.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl01_3044 fimbrial biogenesis outer membrane usher protein YP_002983854.1 KEGG: rme:Rmet_4253 fimbrial protein YP_002983855.1 KEGG: pfo:Pfl01_3037 fimbrial protein YP_002983856.1 PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6073 transposase IS3/IS911 YP_002983857.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_6074 integrase, catalytic region YP_002983858.1 PFAM: fimbrial protein; KEGG: rme:Rmet_4253 fimbrial protein YP_002983859.1 PFAM: penicillin-binding protein transpeptidase; KEGG: rso:RS02005 oxacillin hydrolase YP_002983860.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bpt:Bpet1842 ArsR family transcriptional regulator YP_002983861.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5842 major facilitator transporter YP_002983862.1 KEGG: azc:AZC_1023 hypothetical protein YP_002983863.1 PFAM: Na+/solute symporter; KEGG: azc:AZC_1022 monocarboxylic acid permease YP_002983864.1 KEGG: reu:Reut_B5732 hypothetical protein YP_002983865.1 KEGG: rso:RSc2698 hypothetical protein YP_002983866.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6566 GCN5-related N-acetyltransferase YP_002983867.1 TIGRFAM: arsenic resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bmj:BMULJ_05805 ACR3 family arsenite transporter YP_002983868.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: rso:RSp1128 arsenate reductase (arsenical PUMP modifier) protein YP_002983869.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A2179 lactoylglutathione lyase YP_002983870.1 SMART: regulatory protein ArsR; KEGG: rso:RSp1129 arsenical resistance operon repressor transcription regulator protein YP_002983871.1 Required for efficient pilin antigenic variation YP_002983872.1 KEGG: rme:Rmet_4026 periplasmic ligand-binding sensor protein YP_002983873.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_002983874.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rso:RS02008 oxidoreductase protein YP_002983875.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS02009 transcription regulator protein YP_002983876.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002983877.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS02011 acyl-CoA dehydrogenase oxidoreductase protein YP_002983878.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS02012 acetyl-coenzyme A synthetase YP_002983879.1 KEGG: rso:RS02013 4-hydroxybenzoyl-CoA thioesterase protein YP_002983880.1 PFAM: endoribonuclease L-PSP; KEGG: rso:RS02014 hypothetical protein YP_002983881.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_1732 AraC family transcriptional regulator YP_002983882.1 PFAM: carboxymuconolactone decarboxylase; KEGG: reu:Reut_B4714 carboxymuconolactone decarboxylase YP_002983883.1 PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B4715 hypothetical protein YP_002983884.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A3610 dehydrogenase YP_002983885.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4716 major facilitator transporter YP_002983886.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSp0075 alpha-ketoglutarate permease transmembrane protein YP_002983887.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05543 hypothetical protein YP_002983888.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RS05542 DNA-binding transcriptional regulatory transcription regulator protein YP_002983889.1 PFAM: helix-turn-helix HxlR type; KEGG: rso:RS05541 hypothetical protein YP_002983890.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS05540 hypothetical protein YP_002983891.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B2073 glyoxalase/bleomycin resistanceprotein/dioxygenase superfamily protein YP_002983892.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B4146 LysR family transcriptional regulator YP_002983893.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rso:RSp0106 molybdate-binding periplasmic signal peptide protein YP_002983894.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS03015 transport transmembrane protein YP_002983895.1 PFAM: regulatory protein TetR; KEGG: rso:RS03014 transcription regulator protein YP_002983896.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: rso:RS03013 hypothetical protein YP_002983897.1 PFAM: protein of unknown function DUF58; KEGG: rso:RS03012 hypothetical protein YP_002983898.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: rso:RS03011 hypothetical protein YP_002983899.1 KEGG: rso:RS03006 lipoprotein YP_002983900.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: rso:RS03003 hypothetical protein YP_002983901.1 Catalyzes the conversion of citrate to isocitrate YP_002983902.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_002983903.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_002983904.1 KEGG: rso:RSp0123 propionate catabolism operon regulatory transcription regulator protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_002983905.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: reu:Reut_B4062 metal-dependent phosphohydrolase YP_002983906.1 KEGG: rfr:Rfer_0005 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002983907.1 PFAM: isochorismatase hydrolase; KEGG: reu:Reut_B4618 isochorismatase hydrolase YP_002983908.1 PFAM: chloride channel core; KEGG: bur:Bcep18194_A4091 Cl-channel, voltage gated YP_002983909.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: reu:Reut_B4637 3-demethylubiquinone-9 3-methyltransferase YP_002983911.1 KEGG: rso:RS02998 lipoprotein transmembrane YP_002983912.1 PFAM: DNA topoisomerase type IA zn finger domain protein; restriction endonuclease; KEGG: cti:pRALTA_0076 endonuclease, type II restriction enzyme YP_002983913.1 PFAM: DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: ses:SARI_00228 hypothetical protein YP_002983915.1 KEGG: gbm:Gbem_1911 hypothetical protein YP_002983916.1 KEGG: rso:RSc3434 hypothetical protein YP_002983917.1 KEGG: rso:RS02986 hypothetical protein YP_002983918.1 KEGG: dsy:DSY1020 hypothetical protein; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: EAL domain protein; phosphotransferase system EIIC; SMART: EAL domain protein YP_002983919.1 KEGG: hypothetical protein YP_002983920.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bur:Bcep18194_C6931 hypothetical protein YP_002983921.1 KEGG: rso:RS02988 hypothetical protein YP_002983922.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002983923.1 PFAM: alpha/beta hydrolase fold; KEGG: bcm:Bcenmc03_3335 alpha/beta hydrolase fold YP_002983924.1 PFAM: helix-turn-helix HxlR type; KEGG: bcm:Bcenmc03_3334 HxlR family transcriptional regulator YP_002983925.1 KEGG: reu:Reut_A0606 hypothetical protein YP_002983927.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C6950 transcriptional regulator YP_002983928.1 PFAM: ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_C6949 ThiJ/PfpI family protein YP_002983929.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002983930.1 PFAM: protein of unknown function DUF1311; KEGG: eca:ECA0765 hypothetical protein YP_002983931.1 KEGG: rme:Rmet_4636 hypothetical protein YP_002983932.1 PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein YP_002983933.1 KEGG: rso:RSc3150 transmembrane protein YP_002983934.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_002983935.1 PFAM: sodium/calcium exchanger membrane region; KEGG: reu:Reut_B4399 sodium/calcium exchanger membrane region YP_002983936.1 KEGG: rso:RS01997 signal peptide protein YP_002983938.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcm:Bcenmc03_3757 LysR family transcriptional regulator YP_002983939.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: spe:Spro_2460 ribosyldihydronicotinamide dehydrogenase (quinone) YP_002983940.1 PFAM: protein of unknown function DUF81; KEGG: rso:RS04702 hypothetical protein YP_002983941.1 PFAM: carboxymuconolactone decarboxylase; KEGG: bam:Bamb_5410 carboxymuconolactone decarboxylase YP_002983943.1 PFAM: alpha/beta hydrolase fold; KEGG: bpy:Bphyt_4082 alpha/beta hydrolase fold YP_002983944.1 PFAM: thioesterase superfamily protein; KEGG: rso:RS05225 acyl-CoA thioester hydrolase-related protein YP_002983945.1 KEGG: har:HEAR1579 hypothetical protein YP_002983946.1 KEGG: bmj:BMULJ_06269 hypothetical protein YP_002983947.1 PFAM: outer membrane efflux protein; KEGG: bvi:Bcep1808_3978 outer membrane efflux protein YP_002983948.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: bpd:BURPS668_A0714 multicopper oxidase family protein YP_002983949.1 PFAM: blue (type 1) copper domain protein; KEGG: pna:Pnap_1260 blue (type 1) copper domain protein YP_002983950.1 KEGG: bmj:BMULJ_06272 hypothetical protein YP_002983951.1 SMART: lipopolysaccharide-modifying protein; KEGG: ftm:FTM_1578 hypothetical protein YP_002983952.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: rso:RS05217 hydroxylase protein YP_002983953.1 KEGG: rso:RS05216 hypothetical protein YP_002983954.1 KEGG: rso:RS05215 hypothetical protein YP_002983955.1 PFAM: alkane oxygenase; KEGG: rso:RS05214 dioxygenase signal peptide protein YP_002983956.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: dac:Daci_1258 peptidase dimerisation domain-containing protein YP_002983957.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B2078 LysR family transcriptional regulator YP_002983958.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_002983959.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: reh:H16_B2488 ABC-type transporter permease YP_002983960.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: reh:H16_B2489 ABC-type transporter permease YP_002983961.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: reh:H16_B2490 ABC-type transporter periplasmic component: PAAT family YP_002983962.1 KEGG: reu:Reut_B3507 hypothetical protein YP_002983963.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rso:RS05203 two-component transmembrane sensor histidine kinase transcription regulator protein YP_002983964.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: afe:Lferr_0774 methyltransferase type 11 YP_002983965.1 PFAM: amidohydrolase 2; KEGG: rso:RS05190 hydrolase transmembrane protein YP_002983966.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rso:RS05189 metabolite transporter YP_002983967.1 KEGG: rso:RS05188 maltooligosyl trehalose synthase transmembrane protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002983968.1 KEGG: rso:RS05187 4-alpha-glucanotransferase (amylomaltase) protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_002983969.1 KEGG: rso:RS05186 maltooligosyl trehalose trehalohydrolase protein; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_002983970.1 KEGG: rso:RSp0238 glycogen operon protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002983971.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002983972.1 KEGG: rso:RS05183 hypothetical protein; TIGRFAM: trehalose synthase; trehalose synthase-fused maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; SMART: alpha amylase catalytic sub domain YP_002983973.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rso:RS05182 alpha-amylase-related protein YP_002983974.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002983975.1 KEGG: rso:RSp0245 alkyl hydroperoxide reductase subunit C; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin YP_002983976.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSp0246 alkyl hydroperoxide reductase subunit F YP_002983977.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pap:PSPA7_2742 transcriptional regulator YP_002983978.1 PFAM: ferric-uptake regulator; KEGG: rso:RSp0247 ferric uptake transcriptional (FUR)-like transcription regulator protein YP_002983979.1 KEGG: rso:RS03718 hypothetical protein YP_002983980.1 KEGG: rso:RS03717 hypothetical protein YP_002983981.1 KEGG: rso:RS03716 transmembrane protein YP_002983982.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: Ferrous iron transporter B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: rso:RSp0251 ferrous iron transport B transmembrane protein YP_002983983.1 PFAM: FeoA family protein; KEGG: rso:RS03714 hypothetical protein YP_002983984.1 KEGG: rso:RS03712 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; hypothetical protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein YP_002983985.1 KEGG: rso:RS03711 methyl-accepting chemotaxis transducer transmembrane protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; histidine kinase HAMP region domain protein YP_002983986.1 KEGG: rso:RS03710 hypothetical protein YP_002983987.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; oxidoreductase FAD-binding domain protein; Siderophore-interacting protein; KEGG: rso:RS03709 hypothetical protein YP_002983988.1 PFAM: transcriptional regulator PadR family protein; KEGG: rso:RS03708 hypothetical protein YP_002983989.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rme:Rmet_3441 MarR family transcriptional regulator YP_002983990.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: afe:Lferr_1680 alkylhydroperoxidase like protein, AhpD family YP_002983991.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3439 GCN5-related N-acetyltransferase YP_002983992.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: cti:RALTA_B1550 (acyl-carrier protein) phosphodiesterase YP_002983993.1 KEGG: rso:RSp0259 pyrrolidone-carboxylate peptidase protein; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_002983994.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rso:RS03706 transcription regulator protein YP_002983995.1 KEGG: reh:H16_B1494 hypothetical protein YP_002983996.1 PFAM: penicillin-binding protein transpeptidase; KEGG: pla:Plav_3016 beta-lactamase YP_002983998.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_002983999.1 PFAM: beta-lactamase; KEGG: bra:BRADO6186 beta-lactamase YP_002984000.1 PFAM: hypothetical protein; KEGG: rme:Rmet_0706 hypothetical protein YP_002984001.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: rme:Rmet_0705 ABC transporter-related protein YP_002984002.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_002984003.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_002984004.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: cvi:CV_3073 hypothetical protein YP_002984005.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS03701 acetyltransferase protein YP_002984006.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS05569 transcription regulator protein YP_002984007.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS05570 acyl-CoA dehydrogenase oxidoreductase protein YP_002984008.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS05571 acetyl-coenzyme A synthetase YP_002984009.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rso:RSp0650 methylmalonate-semialdehyde dehydrogenase oxidoreductase protein YP_002984010.1 KEGG: rso:RSp0649 3-hydroxyisobutyrate dehydrogenase oxidoreductase protein; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_002984011.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002984012.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: rso:RS05575 enoyl-coenzyme A hydratase protein YP_002984013.1 KEGG: pau:PA14_46540 hypothetical protein YP_002984014.1 activates fatty acids by binding to coenzyme A YP_002984015.1 PFAM: chloride channel core; KEGG: rso:RSc1803 hypothetical protein YP_002984016.1 PFAM: regulatory protein IclR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein IclR; KEGG: bph:Bphy_6026 IclR family transcriptional regulator YP_002984017.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: bch:Bcen2424_5398 dimethylmenaquinone methyltransferase YP_002984018.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bch:Bcen2424_5397 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_002984019.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bph:Bphy_6029 SMP-30/gluconolaconase/LRE domain-containing protein YP_002984020.1 PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_6030 major facilitator transporter YP_002984021.1 PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_6035 major facilitator transporter YP_002984022.1 PFAM: amidohydrolase 2; KEGG: bmj:BMULJ_03819 predicted metal-dependent hydrolase of the TIM-barrel fold YP_002984023.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bcm:Bcenmc03_4466 peptidase S8 and S53 subtilisin kexin sedolisin YP_002984024.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: atc:AGR_L_1441 hypothetical protein YP_002984025.1 KEGG: rso:RS04801 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002984026.1 KEGG: rso:RS04800 hypothetical protein YP_002984027.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: rso:RS04799 hypothetical protein YP_002984028.1 PFAM: virulence factor family protein; KEGG: rso:RS04798 AcvB-like protein YP_002984029.1 PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: rso:RS04796 sulfate transporter transmembrane protein YP_002984030.1 KEGG: rso:RS04795 alanin-rich signal peptide protein YP_002984031.1 PFAM: LysR substrate-binding; regulatory protein LysR; regulatory protein MarR; KEGG: reh:H16_B1766 transcriptional regulator, LysR-family YP_002984032.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_B1767 oxidoreductase YP_002984033.1 PFAM: YheO domain protein; KEGG: rso:RS04794 hypothetical protein YP_002984034.1 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_002984035.1 PFAM: endoribonuclease L-PSP; KEGG: rso:RS04792 hypothetical protein YP_002984036.1 PFAM: type IV pilus assembly PilZ; KEGG: reh:H16_A1321 hypothetical protein YP_002984037.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS04791 transcription regulator protein YP_002984038.1 PFAM: hypothetical protein; KEGG: rso:RS04790 hypothetical protein YP_002984039.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS04789 transcription regulator protein YP_002984040.1 KEGG: rso:RS04788 hypothetical protein YP_002984041.1 KEGG: rme:Rmet_4996 hypothetical protein YP_002984042.1 KEGG: rso:RS03031 hypothetical protein YP_002984043.1 KEGG: rso:RS03032 periplasmic substrate-binding transmembrane protein YP_002984044.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rso:RS03033 transmembranee ABC transporter protein YP_002984045.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RS03034 ABC transporter ATP-binding protein YP_002984046.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rso:RS03035 transcription regulator protein YP_002984047.1 KEGG: rso:RSp1505 nitric oxide reductase subunit B YP_002984048.1 KEGG: rme:Rmet_4922 hypothetical protein YP_002984049.1 KEGG: rso:RS03038 major anaerobically induced outer membrane transmembrane protein; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; multicopper oxidase type 2; cytochrome C class I YP_002984050.1 PFAM: protein of unknown function DUF323; KEGG: rso:RS03039 signal peptide protein YP_002984051.1 PFAM: electron transporter SCO1/SenC; KEGG: rso:RS03040 signal peptide protein YP_002984052.1 PFAM: fumarylacetoacetate hydrolase; KEGG: reh:H16_A0072 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase YP_002984053.1 PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reh:H16_A0071 transcriptional regulator, GntR-family YP_002984054.1 PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_4990 major facilitator transporter YP_002984055.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: reu:Reut_A0046 Asp/Glu racemase YP_002984056.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_002984057.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: rme:Rmet_3885 Asp/Glu racemase YP_002984058.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bra:BRADO5261 transcriptional regulator YP_002984059.1 PFAM: DSBA oxidoreductase; KEGG: bcm:Bcenmc03_4802 DsbA oxidoreductase YP_002984060.1 KEGG: fal:FRAAL3149 acetyl-CoA:acetoacetyl-CoA transferase subunit beta; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_002984061.1 PFAM: coenzyme A transferase; KEGG: cbt:CLH_1917 CoA-transferase, subunit alpha YP_002984062.1 PFAM: sodium/hydrogen exchanger; KEGG: rso:RS03045 cation-efflux system transmembrane protein YP_002984063.1 PFAM: NADPH-dependent FMN reductase; KEGG: rso:RS03046 hypothetical protein YP_002984065.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bav:BAV1624 acetyltransferase YP_002984066.1 KEGG: rso:RS03125 hypothetical protein YP_002984067.1 KEGG: rso:RS03126 hypothetical protein YP_002984068.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sml:Smlt2573 ATP-binding ABC transporter protein YP_002984069.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sml:Smlt2572 transmembrane permease ABC transporter protein YP_002984070.1 PFAM: NMT1/THI5 like domain protein; substrate-binding region of ABC-type glycine betaine transporter; SMART: extracellular solute-binding protein family 3; KEGG: mlo:mll6979 ABC transporter periplasmic substrate-binding protein YP_002984071.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpy:Bphyt_4012 IclR family transcriptional regulator YP_002984072.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpy:Bphyt_4014 L-carnitine dehydratase/bile acid-inducible protein F YP_002984073.1 KEGG: bpy:Bphyt_4013 citrate synthase YP_002984074.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: pol:Bpro_4512 gluconolactonase YP_002984075.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_002984076.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_002984077.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002984078.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002984079.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSp1409 chemotaxis response regulator transcription regulator protein YP_002984080.1 PFAM: CheY binding; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: rso:RSp1408 chemotaxis sensor histidine kinase transcription regulator protein YP_002984081.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rso:RSp1407 chemotaxis protein CheW YP_002984082.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RSp1406 methyl-accepting chemotaxis I YP_002984083.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: cti:RALTA_B0243 MCP: methyl-accepting chemotaxis protein, chemotaxis sensory transducer YP_002984084.1 KEGG: rso:RSp1405 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002984085.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: rso:RS02054 chemotaxis protein YP_002984086.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_002984087.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rso:RSp1402 chemotaxis response regulator transcription regulator protein YP_002984088.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_002984089.1 PFAM: ApbE family lipoprotein; KEGG: rso:RSp1366 thiamine biosynthesis ApbE transmembrane protein YP_002984090.1 PFAM: cytochrome C class I; KEGG: rso:RS02091 lipoprotein YP_002984091.1 reduces nitrous oxide to nitrogen YP_002984092.1 PFAM: FMN-binding domain protein; KEGG: rso:RSp1369 transmembrane regulatory NosR transcription regulator protein YP_002984093.1 PFAM: periplasmic copper-binding; SMART: carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; KEGG: rso:RSp1370 copper-binding periplasmic NosD signal peptide protein YP_002984094.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rme:Rmet_4914 ABC transporter YP_002984095.1 KEGG: rso:RSp1372 NosY transmembrane protein YP_002984096.1 PFAM: NosL family protein; KEGG: rme:Rmet_4912 NosL YP_002984097.1 KEGG: rme:Rmet_4911 hypothetical protein YP_002984098.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: rso:RSp1394 flagellar biosynthetic FlhB transmembrane protein YP_002984099.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rso:RSp1393 flagellar biosynthesis FlhA transmembrane protein YP_002984100.1 positive regulator of class III flagellar genes YP_002984101.1 KEGG: rso:RS02067 hypothetical protein YP_002984102.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_002984103.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: rso:RSc2118 xanthine permease transmembrane protein YP_002984104.1 PFAM: aldose 1-epimerase; KEGG: bxe:Bxe_B2624 aldose 1-epimerase YP_002984105.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2623 AraC family transcriptional regulator YP_002984106.1 KEGG: bxe:Bxe_B2621 ABC xylose transporter periplasmic ligand binding protein; TIGRFAM: D-xylose ABC transporter periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator YP_002984107.1 with XylFH is part of the high affinity xylose ABC transporter YP_002984108.1 PFAM: inner-membrane translocator; KEGG: bmj:BMULJ_04294 simple sugar transporter permease YP_002984109.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C1363 D-xylose dehydrogenase YP_002984110.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: bxe:Bxe_C1362 Xylono-1,4-lactonase YP_002984111.1 PFAM: fumarylacetoacetate hydrolase; KEGG: bpy:Bphyt_5802 hypothetical protein YP_002984112.1 PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet4676 IclR family transcriptional regulator YP_002984113.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bcm:Bcenmc03_6297 LacI family transcription regulator YP_002984114.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002984115.1 KEGG: sml:Smlt4328 hypothetical protein YP_002984116.1 PFAM: isochorismatase hydrolase; KEGG: bpy:Bphyt_3260 isochorismatase hydrolase YP_002984117.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpt:Bpet2223 AraC family transcriptional regulator YP_002984118.1 PFAM: 17 kDa surface antigen; KEGG: rso:RS02072 lipoprotein YP_002984119.1 PFAM: protein of unknown function YGGT; KEGG: rso:RS02073 hypothetical protein YP_002984120.1 PFAM: PEBP family protein; KEGG: spe:Spro_2903 PEBP family protein YP_002984121.1 KEGG: rso:RSp1383 alkanesulfonates binding protein precursor; TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_002984122.1 PFAM: protein of unknown function DUF971; KEGG: pfo:Pfl01_3157 hypothetical protein YP_002984123.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: ppw:PputW619_5008 heat repeat-containing PBS lyase YP_002984124.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bch:Bcen2424_1973 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_002984125.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: reh:H16_B2242 oxidoreductase YP_002984126.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reh:H16_B2241 transcriptional regulator, GntR-family YP_002984127.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator YP_002984128.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bph:Bphy_5517 ABC transporter YP_002984129.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator YP_002984130.1 PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner membrane ABC transporter permease YjfF YP_002984131.1 KEGG: rme:Rmet_5010 hypothetical protein YP_002984132.1 KEGG: syg:sync_0841 hypothetical protein YP_002984133.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rme:Rmet_4484 bifunctional deaminase-reductase-like protein YP_002984134.1 Required for efficient pilin antigenic variation YP_002984135.1 KEGG: rme:Rmet_4176 transcriptional regulator, LysR family YP_002984136.1 KEGG: reu:Reut_B4592 hypothetical protein YP_002984137.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002984138.1 PFAM: alpha/beta hydrolase fold; KEGG: ppg:PputGB1_3299 alpha/beta hydrolase fold YP_002984139.1 PFAM: fatty acid desaturase; KEGG: bch:Bcen2424_0980 alkane 1-monooxygenase YP_002984140.1 PFAM: cupin; KEGG: bpy:Bphyt_7093 hypothetical protein YP_002984141.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bcj:BCAM0168 AraC family regulatory protein YP_002984142.1 PFAM: NmrA family protein; KEGG: bcj:BCAM0169 NmrA-like family protein YP_002984143.1 KEGG: pnu:Pnuc_1326 hypothetical protein YP_002984144.1 KEGG: rso:RS02076 signal peptide protein YP_002984145.1 PFAM: PEBP family protein; KEGG: rso:RS01998 hypothetical protein YP_002984146.1 PFAM: protein of unknown function DUF1304; KEGG: rso:RS04765 hypothetical protein YP_002984147.1 PFAM: dienelactone hydrolase; KEGG: rso:RS04764 transmembrane protein YP_002984148.1 KEGG: rso:RSc3434 hypothetical protein YP_002984149.1 PFAM: amine oxidase; KEGG: rso:RS04763 hypothetical protein YP_002984150.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002984151.1 PFAM: protein of unknown function DUF350; KEGG: rso:RS05342 hypothetical protein YP_002984152.1 KEGG: rso:RS05341 transmembrane protein YP_002984153.1 KEGG: rso:RS05340 hypothetical protein YP_002984154.1 KEGG: rso:RS05339 serin-rich transmembrane protein YP_002984155.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: rso:RS05338 transmembrane protein YP_002984156.1 KEGG: pen:PSEEN2246 diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_002984157.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002984158.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05323 transporter transmembrane protein YP_002984159.1 PFAM: UvrD/REP helicase; KEGG: rso:RS05321 ATP-dependent DNA helicase II protein YP_002984160.1 KEGG: bam:Bamb_5087 hypothetical protein YP_002984161.1 PFAM: protein of unknown function UPF0060; KEGG: bur:Bcep18194_A4425 hypothetical protein YP_002984162.1 PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein YP_002984163.1 KEGG: rso:RS05318 hypothetical protein YP_002984164.1 KEGG: rso:RS05317 hypothetical protein YP_002984165.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS05316 ferrisiderophore receptor protein YP_002984166.1 KEGG: rso:RS05315 signal peptide protein YP_002984167.1 KEGG: rso:RS05314 signal peptide protein YP_002984169.1 PFAM: protein of unknown function DUF81; KEGG: rso:RS05313 integral membrane transmembrane protein YP_002984170.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS05312 transcription regulator protein YP_002984171.1 KEGG: rso:RS05311 hypothetical protein YP_002984172.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS05310 acetyl-coenzyme A synthetase YP_002984173.1 PFAM: protein of unknown function DUF1488; KEGG: rso:RS05307 hypothetical protein YP_002984175.1 KEGG: rso:RS05306 signal peptide protein YP_002984176.1 KEGG: rso:RS05305 lipoprotein transmembrane YP_002984178.1 KEGG: rso:RS05304 hypothetical protein YP_002984179.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rso:RSp1258 [acyl-carrier-protein] phosphodiesterase YP_002984180.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS05302 transcription regulator protein YP_002984181.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05301 integral membrane transmembrane protein YP_002984182.1 KEGG: rso:RS05300 hypothetical protein YP_002984183.1 KEGG: rso:RS03196 signal peptide protein YP_002984184.1 KEGG: rso:RS03194 hypothetical protein YP_002984185.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rso:RS03187 transmembrane cytochrome bd-II oxidase (subunit II) oxidoreductase protein YP_002984186.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rso:RS03186 transmembrane cytochrome bd-II oxidase (subunit I) oxidoreductase protein YP_002984187.1 KEGG: rso:RS03185 hypothetical protein YP_002984188.1 PFAM: transglycosylase; KEGG: bpy:Bphyt_4801 transglycosylase YP_002984189.1 KEGG: rso:RSc2198 hypothetical protein YP_002984190.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS03167 high affinity nitrate transporter transmembrane protein YP_002984191.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rso:RSp1222 nitrite reductase NADPH large subunit YP_002984192.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: rso:RSp1221 nitrite reductase NADPH small subunit YP_002984193.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RS03164 flavoprotein FAD oxidoreductase YP_002984194.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: rso:RSp1219 nitrate reductase large subunit oxidoreductase protein YP_002984195.1 KEGG: rso:RS03158 hypothetical protein YP_002984196.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RS03157 hypothetical protein YP_002984197.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr5045 inner membrane protein YP_002984198.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002984199.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase YP_002984200.1 PFAM: entericidin EcnAB; KEGG: rso:RS03154 lipoprotein transmembrane YP_002984201.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rso:RS03153 methyl-accepting chemotaxis transducer transmembrane protein YP_002984202.1 KEGG: rso:RS03152 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002984203.1 PFAM: type IV pilus assembly PilZ; KEGG: rso:RS03149 hypothetical protein YP_002984204.1 PFAM: GtrA family protein; KEGG: rme:Rmet_5967 GtrA-like protein YP_002984205.1 KEGG: rso:RS03148 hypothetical protein YP_002984206.1 KEGG: rso:RS03147 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002984207.1 KEGG: rso:RS03145 signal peptide protein YP_002984208.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS03144 outer membrane channel lipoprotein transmembrane YP_002984209.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03143 drug efflux transmembrane protein YP_002984210.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03142 drug efflux pump transmembrane protein YP_002984211.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rso:RS03141 resistance transmembrane protein YP_002984212.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RS03140 two component response regulator transcription regulator protein YP_002984213.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rso:RS03139 two component transmembrane sensor kinase transcription regulator protein YP_002984214.1 PFAM: protein of unknown function DUF333; KEGG: rso:RS03138 proline rich transmembrane protein YP_002984215.1 PFAM: glycosyl transferase family 39; KEGG: rso:RS03137 hypothetical protein YP_002984216.1 DHBP synthase; functions during riboflavin biosynthesis YP_002984217.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002984218.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; KEGG: rso:RSp1189 high-affinity gluconate transporter (GNT-III system) transmembrane protein YP_002984219.1 PFAM: endoribonuclease L-PSP; KEGG: rso:RS03132 hypothetical protein YP_002984220.1 PFAM: amidohydrolase; D-aminoacylase domain protein; amidohydrolase; KEGG: rso:RSp1187 N-acyl-D-glutamate deacylase protein YP_002984221.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: rso:RS03130 hypothetical protein YP_002984222.1 PFAM: alanine racemase domain protein; KEGG: rso:RSp1185 D-serine deaminase YP_002984223.1 PFAM: PfkB domain protein; KEGG: rso:RS05074 fructokinase-like protein (sugar kinase) YP_002984224.1 PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_3277 penicillin amidase YP_002984225.1 KEGG: rso:RS05068 composite two-component sensor histidine kinase and response regulator hybrid transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_002984226.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: rso:RS05067 hypothetical protein YP_002984227.1 KEGG: reu:Reut_B4511 hypothetical protein YP_002984228.1 KEGG: rso:RS05066 hypothetical protein YP_002984229.1 PFAM: protein of unknown function DUF1458; KEGG: rso:RS05065 hypothetical protein YP_002984230.1 TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: rso:RSp1174 acid phosphatase protein YP_002984231.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: rso:RS05063 lipoprotein transmembrane YP_002984232.1 PFAM: integral membrane protein TerC; transporter-associated region; CBS domain containing protein; KEGG: rso:RS05062 hypothetical protein YP_002984233.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rme:Rmet_0006 protein of unknown function DUF6, transmembrane YP_002984234.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL3396 AraC family transcriptional regulator YP_002984235.1 KEGG: rso:RS05645 two-component sensor histidine kinase transcription regulator protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_002984236.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RS05646 two-component response regulator transcription regulator protein YP_002984237.1 KEGG: rso:RS05425 lipoprotein signal peptide YP_002984238.1 PFAM: UspA domain protein; KEGG: rso:RS05426 hypothetical protein YP_002984239.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS05428 transcription regulator protein YP_002984240.1 KEGG: rso:RS05430 signal peptide protein YP_002984241.1 KEGG: GK10809 YP_002984242.1 KEGG: rso:RS05432 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_002984243.1 KEGG: rso:RS05433 hypothetical protein YP_002984244.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain protein; regulatory protein LysR; KEGG: rso:RS05434 molybdenum-pterin-binding protein YP_002984245.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone) YP_002984246.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RS05462 ABC transporter ATP-binding protein YP_002984247.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rso:RS05467 hypothetical protein YP_002984248.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05506 outer-membrane drug efflux protein YP_002984249.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp1113 transmembrane multidrug-efflux system lipoprotein transmembrane YP_002984250.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rso:RSp1112 transmembrane multidrug efflux system transmembrane protein YP_002984251.1 PFAM: alpha/beta hydrolase; KEGG: rso:RS02619 lipase protein YP_002984252.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS02618 transcription regulator protein YP_002984253.1 KEGG: rso:RSc0320 hypothetical protein YP_002984254.1 PFAM: protein of unknown function DUF82; KEGG: rso:RS02617 hypothetical protein YP_002984255.1 KEGG: rso:RSp1105 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20 YP_002984256.1 KEGG: rso:RSp1104 trehalose-phosphatase protein; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_002984257.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_II0478 2,4-dienoyl-CoA reductase YP_002984258.1 KEGG: rso:RS02609 hypothetical protein YP_002984259.1 KEGG: rso:RS02608 integrase/recombinase protein YP_002984260.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rso:RSp1101 UDP-glucose 4-epimerase protein YP_002984261.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: rso:RS02606 lipoprotein transmembrane YP_002984262.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: rso:RS02605 methyl-accepting chemotaxis transducer transmembrane protein YP_002984263.1 PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS02604 HNS-like transcription regulator protein YP_002984264.1 KEGG: rso:RS02603 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002984265.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS02602 transcription regulator protein YP_002984266.1 PFAM: polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RS02601 activation/secretion signal peptide protein YP_002984267.1 KEGG: rso:RS02600 hemagglutinin-related transmembrane protein YP_002984268.1 KEGG: rso:RS02599 hemagglutinin-related transmembrane protein YP_002984269.1 PFAM: Flp/Fap pilin component; KEGG: rso:RS02598 pilin protein YP_002984270.1 PFAM: peptidase A24A prepilin type IV; KEGG: rso:RSp1091 prepilin peptidase transmembrane protein YP_002984271.1 PFAM: TadE family protein; KEGG: rso:RS02595 hypothetical protein YP_002984272.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rso:RS02596 signal peptide protein YP_002984273.1 PFAM: type II and III secretion system protein; KEGG: rso:RS02594 outer membrane channel signal peptide protein YP_002984274.1 KEGG: rso:RSp1086 pilus assembly protein YP_002984275.1 PFAM: type II secretion system protein E; KEGG: rso:RSp1085 secretion ATPase protein YP_002984276.1 PFAM: type II secretion system protein; KEGG: rso:RS02591 pilus assembly transmembrane protein YP_002984277.1 PFAM: type II secretion system protein; KEGG: rso:RS02590 tight adherence TadC related transmembrane protein YP_002984278.1 PFAM: hypothetical protein; KEGG: rso:RS02589 lipoprotein transmembrane YP_002984279.1 KEGG: rso:RS02588 signal peptide protein YP_002984280.1 KEGG: rso:RS02587 hypothetical protein YP_002984281.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: rso:RS02586 sigma-54 interacting transcription regulator protein YP_002984282.1 KEGG: rso:RS02585 lipoprotein YP_002984283.1 PFAM: cytochrome P450; FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rme:Rmet_3467 cytochrome P450 YP_002984284.1 KEGG: rso:RS02582 hypothetical protein YP_002984285.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: rso:RS02580 glucose-fructose oxidoreductase oxidoreductase protein YP_002984286.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: reu:Reut_B5114 antibiotic biosynthesis monooxygenase YP_002984287.1 KEGG: reu:Reut_B5115 cytochrome p450 oxidoreductase YP_002984288.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ote:Oter_1308 ArsR family transcriptional regulator YP_002984289.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bmj:BMULJ_00080 diamine N-acetyltransferase YP_002984290.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pap:PSPA7_5127 oxidoreductase YP_002984291.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS02469 ferrisiderophore receptor protein YP_002984292.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: rso:RS02398 oxidoreductase protein YP_002984293.1 PFAM: sodium/hydrogen exchanger; KEGG: reu:Reut_B3954 sodium/hydrogen exchanger YP_002984294.1 PFAM: patatin; KEGG: rso:RS02397 transmembrane protein YP_002984295.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_002984296.1 converts acetoacetate to acetone and carbon dioxide YP_002984297.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rso:RS02394 transcription regulator protein YP_002984298.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_002984299.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rso:RS02392 transmembrane aldehyde dehydrogenase oxidoreductase protein YP_002984300.1 KEGG: rso:RS02391 hypothetical protein YP_002984301.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tbd:Tbd_0855 cold-shock DNA-binding protein family protein YP_002984302.1 PFAM: potassium transporter; KEGG: rso:RSp1052 potassium uptake transmembrane protein YP_002984303.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: rso:RSp1050 formate dehydrogenase associated protein YP_002984304.1 KEGG: rso:RS02386 hypothetical protein YP_002984305.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rso:RS02045 formate dehydrogenase oxidoreductase protein YP_002984306.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS02384 transporter transmembrane protein YP_002984307.1 PFAM: Hpt domain protein; KEGG: rso:RS02382 hypothetical protein YP_002984308.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pnu:Pnuc_1300 CzcA family heavy metal efflux protein YP_002984309.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: pnu:Pnuc_1301 RND family efflux transporter MFP subunit YP_002984310.1 PFAM: outer membrane efflux protein; KEGG: pnu:Pnuc_1302 outer membrane efflux protein YP_002984311.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pfo:Pfl01_0677 MerR family transcriptional regulator YP_002984312.1 KEGG: pfo:Pfl01_0678 hypothetical protein YP_002984313.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: rso:RS02375 lipoprotein transmembrane YP_002984314.1 PFAM: DoxX family protein; KEGG: rso:RS02374 hypothetical protein YP_002984315.1 KEGG: rso:RS02373 hypothetical protein YP_002984316.1 PFAM: protein of unknown function DUF692; KEGG: rso:RS02372 hypothetical protein YP_002984317.1 KEGG: rso:RS02371 signal peptide protein YP_002984318.1 KEGG: bmj:BMULJ_01535 transcription elongation factor YP_002984319.1 KEGG: rso:RS02370 hypothetical protein YP_002984320.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr3911 hypothetical protein YP_002984321.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mll3910 transcriptional regulator YP_002984322.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator YP_002984323.1 KEGG: rso:RSp0274 gamma-glutamyltranspeptidase signal peptide protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_002984324.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpy:Bphyt_6758 4-hydroxyphenylpyruvate dioxygenase YP_002984325.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5897 major facilitator transporter YP_002984326.1 PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; UBA/THIF-type NAD/FAD binding protein; KEGG: bph:Bphy_6410 shikimate dehydrogenase substrate binding subunit YP_002984327.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: bph:Bphy_6411 major facilitator transporter YP_002984328.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reu:Reut_B5034 regulatory protein, IclR YP_002984329.1 PFAM: xylose isomerase; KEGG: reu:Reut_B5035 4-hydroxyphenylpyruvate dioxygenase YP_002984330.1 PFAM: porin Gram-negative type; KEGG: reu:Reut_B5031 porin YP_002984331.1 catalyzes the oxidative deamination of D-amino acids YP_002984332.1 catalyzes the formation of acetaldehyde from ethanolamine YP_002984333.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: reh:H16_B0096 ethanolamine ammonia-lyase heavy chain YP_002984334.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bxe:Bxe_B0092 chromate transporter YP_002984335.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_002984336.1 KEGG: bac:BamMC406_3250 hypothetical protein YP_002984337.1 PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: eba:ebA5073 poly-beta-hydroxyalkanoate synthase YP_002984338.1 KEGG: har:HEAR2590 ABC transporter membrane protein YP_002984339.1 KEGG: eba:ebA5072 hypothetical protein YP_002984340.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: har:HEAR1516 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_002984341.1 KEGG: pla:Plav_3453 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_002984342.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C6772 succinate semialdehyde dehydrogenase YP_002984343.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bur:Bcep18194_C6773 iron-containing alcohol dehydrogenase YP_002984344.1 KEGG: bur:Bcep18194_C6774 flavin-containing monooxygenase FMO YP_002984345.1 PFAM: alpha/beta hydrolase; KEGG: bur:Bcep18194_C6775 esterase/lipase/thioesterase YP_002984346.1 PFAM: endoribonuclease L-PSP; KEGG: bcj:BCAM0117 endoribonuclease YP_002984347.1 PFAM: protein of unknown function DUF1329; KEGG: reu:Reut_C6388 hypothetical protein YP_002984348.1 PFAM: protein of unknown function DUF1302; KEGG: reu:Reut_C6389 hypothetical protein YP_002984349.1 KEGG: reu:Reut_C6390 transporter YP_002984350.1 KEGG: reu:Reut_C6391 BNR repeat-containing glycosyl hydrolase YP_002984351.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: reu:Reut_B5715 phytanoyl-CoA dioxygenase YP_002984352.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_C6386 regulatory protein, TetR YP_002984353.1 PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_C6399 twin-arginine translocation pathway signal YP_002984354.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: bur:Bcep18194_C6790 phytanoyl-CoA dioxygenase YP_002984355.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: reh:H16_A0831 monoamine oxidase (flavin containing) YP_002984356.1 KEGG: bcj:BCAM0113 cytochrome C precursor YP_002984357.1 PFAM: transposase Tn3 family protein; KEGG: bvi:Bcep1808_7171 transposase Tn3 family protein YP_002984358.1 KEGG: bvi:Bcep1808_7205 TnpC YP_002984359.1 PFAM: integrase family protein; KEGG: bmu:Bmul_5789 integrase family protein YP_002984360.1 KEGG: kpn:KPN_pKPN3p05907 hypothetical protein YP_002984361.1 PFAM: plasmid stabilization system; KEGG: sfl:CP0218 hypothetical protein YP_002984362.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: smd:Smed_6450 CopG family transcriptional regulator YP_002984363.1 KEGG: gvi:gll4023 unknown protein YP_002984364.1 KEGG: reh:PHG105 KfrA protein YP_002984365.1 PFAM: cytochrome C class I; KEGG: reu:Reut_C6402 cytochrome C, class I YP_002984366.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: reh:H16_A0845 L-amino-acid oxidase YP_002984367.1 PFAM: cytochrome C class I; KEGG: bch:Bcen2424_5813 cytochrome C, class I YP_002984368.1 KEGG: bur:Bcep18194_C6792 hypothetical protein YP_002984369.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0698 transcription regulator protein YP_002984371.1 activates fatty acids by binding to coenzyme A YP_002984372.1 KEGG: bur:Bcep18194_C6850 hypothetical protein YP_002984373.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_C6848 glucose-methanol-choline oxidoreductase YP_002984374.1 PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C6847 aldehyde dehydrogenase YP_002984375.1 PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C6846 alpha/beta hydrolase YP_002984376.1 KEGG: bur:Bcep18194_C6845 flavin-containing monooxygenase FMO YP_002984378.1 KEGG: mms:mma_1788 hypothetical protein YP_002984380.1 PFAM: replication initiation factor; KEGG: aav:Aave_2390 replication initiation factor YP_002984381.1 KEGG: neu:NE0889 hypothetical protein YP_002984385.1 KEGG: Hypothetical protein CBG08535 YP_002984386.1 KEGG: xcv:XCV2464 filamentous phage phiLf protein VI YP_002984387.1 PFAM: hypothetical protein; KEGG: xcb:XC_2117 Pi protein YP_002984389.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; KEGG: bte:BTH_I3270 hypothetical protein YP_002984390.1 KEGG: swd:Swoo_0396 hypothetical protein YP_002984392.1 PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5340 transposase YP_002984393.1 PFAM: Resolvase domain; KEGG: pap:PSPA7_5339 DNA-invertase YP_002984394.1 KEGG: rme:Rmet_6342 hypothetical protein YP_002984395.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rme:Rmet_6341 addiction module toxin, RelE/StbE YP_002984396.1 KEGG: rme:Rmet_6340 hypothetical protein YP_002984397.1 PFAM: cupin; KEGG: rme:Rmet_6339 cupin 2, conserved barrel YP_002984399.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: npu:Npun_R6592 type I phosphodiesterase/nucleotide pyrophosphatase YP_002984400.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bvi:Bcep1808_5897 MerR family transcriptional regulator YP_002984401.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bmj:BMULJ_05681 short-chain alcohol dehydrogenase YP_002984402.1 KEGG: bmj:BMULJ_05682 hypothetical protein YP_002984403.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1996 transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein YP_002984404.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1995 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein YP_002984405.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002984406.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002984407.1 KEGG: bur:Bcep18194_C6587 hypothetical protein YP_002984408.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bur:Bcep18194_C6588 sigma-24 (FecI-like) YP_002984409.1 PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: aav:Aave_3256 beta-Ig-H3/fasciclin YP_002984410.1 KEGG: pna:Pnap_3162 globin YP_002984412.1 KEGG: reh:H16_A1984 hypothetical protein YP_002984413.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: bph:Bphy_6250 RND family efflux transporter MFP subunit YP_002984414.1 PFAM: protein of unknown function DUF214; KEGG: bte:BTH_II0063 permease domain-containing protein YP_002984415.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bph:Bphy_6252 ABC transporter YP_002984416.1 KEGG: rso:RS00827 hypothetical protein YP_002984417.1 KEGG: rso:RSc0198 hypothetical protein YP_002984418.1 TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_A1234 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase YP_002984419.1 PFAM: cytochrome B561; KEGG: rso:RSc0199 cytochrome b561 cytochrome transmembrane protein YP_002984420.1 KEGG: reu:Reut_B5656 hypothetical protein YP_002984421.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA YP_002984422.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD YP_002984423.1 KEGG: rme:Rmet_5683 hypothetical protein YP_002984424.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_002984425.1 PFAM: protein of unknown function DUF1488; KEGG: rso:RSc0203 hypothetical protein YP_002984426.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_002984427.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: rso:RSc0201 hypothetical protein YP_002984428.1 PFAM: heat shock protein Hsp20; KEGG: rso:RSc0200 small heat shock protein YP_002984429.1 KEGG: bmj:BMULJ_05653 cell wall-associated hydrolase YP_002984430.1 KEGG: bcm:Bcenmc03_6863 hypothetical protein YP_002984431.1 KEGG: reu:Reut_C6194 FtsH-2 peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: ATPase AAA; peptidase M41; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002984432.1 PFAM: erythromycin esterase; KEGG: reu:Reut_B5196 erythromycin esterase YP_002984433.1 KEGG: reu:Reut_B5193 hypothetical protein YP_002984434.1 KEGG: bvi:Bcep1808_6309 6-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_002984435.1 KEGG: bph:Bphy_1093 hypothetical protein YP_002984436.1 KEGG: reu:Reut_A1162 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein YP_002984437.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: sen:SACE_2432 formate dehydrogenase, subunit alpha YP_002984438.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: swi:Swit_1474 NADH dehydrogenase (quinone) YP_002984440.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: bpm:BURPS1710b_1485 two-component hybrid sensor and regulator YP_002984441.1 PFAM: heat shock protein Hsp20; KEGG: bte:BTH_II0924 heat shock protein YP_002984442.1 KEGG: bte:BTH_I2124 sigma 54 modulation protein YP_002984444.1 KEGG: bte:BTH_II1308 hypothetical protein YP_002984446.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: reh:H16_A1997 chaperonin GroEL (HSP60 family) YP_002984449.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_002984450.1 KEGG: rso:RSc0193 hypothetical protein YP_002984451.1 KEGG: reu:Reut_B4032 signal peptide protein YP_002984452.1 PFAM: conserved hypothetical protein; beta-lactamase; KEGG: bte:BTH_II0925 beta-lactamase YP_002984453.1 PFAM: protein of unknown function DUF187; KEGG: bvi:Bcep1808_6307 hypothetical protein YP_002984454.1 PFAM: polysaccharide deacetylase; KEGG: bac:BamMC406_6214 polysaccharide deacetylase YP_002984455.1 PFAM: rhomboid family protein; KEGG: rso:RS02331 hypothetical protein YP_002984456.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: mca:MCA1213 hypothetical protein YP_002984457.1 KEGG: bmv:BMASAVP1_A1952 ribosomal subunit interface protein YP_002984458.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: cti:RALTA_A1758 acetoacetyl-CoA reductase YP_002984459.1 KEGG: reu:Reut_A1232 hypothetical protein YP_002984460.1 PFAM: nitroreductase; KEGG: bma:BMAA2034 hypothetical protein YP_002984461.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: rso:RSc0194 zinc-dependent alcohol dehydrogenase oxidoreductase protein YP_002984462.1 KEGG: rme:Rmet_5125 hypothetical protein YP_002984463.1 KEGG: rso:RSc0193 hypothetical protein YP_002984464.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: reh:H16_A2015 signal-transduction protein YP_002984465.1 KEGG: reu:Reut_A1157 hypothetical protein YP_002984466.1 KEGG: reh:H16_A1999 phosphoribosyl transferase YP_002984467.1 TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; KEGG: bxe:Bxe_B2642 magnesium-translocating P-type ATPase YP_002984468.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_A1225 RND efflux system, outer membrane lipoprotein, NodT YP_002984469.1 PFAM: secretion protein HlyD; KEGG: reu:Reut_A1224 secretion protein HlyD YP_002984470.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: reu:Reut_A1223 ABC transporter YP_002984471.1 PFAM: protein of unknown function DUF214; KEGG: reu:Reut_A1222 hypothetical protein YP_002984472.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rso:RSc0192 response regulator transcription regulator protein YP_002984473.1 KEGG: rso:RSc0191 transmembrane two component system sensor kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; hypothetical protein; ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein YP_002984474.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: rso:RSc0190 transcription regulator protein YP_002984475.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: rso:RSc0189 hypothetical protein YP_002984476.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: rso:RSc1511 hypothetical protein YP_002984477.1 KEGG: rso:RSc0187 hypothetical protein YP_002984478.1 PFAM: transport-associated; SMART: transport-associated and nodulation region; KEGG: rso:RSc0186 hypothetical protein YP_002984479.1 PFAM: UspA domain protein; KEGG: rso:RSc0185 hypothetical protein YP_002984480.1 PFAM: UspA domain protein; KEGG: rso:RSc0184 hypothetical protein YP_002984481.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rso:RSc0183 hypothetical protein YP_002984482.1 KEGG: rso:RSc0182 hypothetical protein YP_002984483.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase GroES domain protein; KEGG: rso:RSc1505 alcohol dehydrogenase-like oxidoreductase protein YP_002984484.1 PFAM: UspA domain protein; KEGG: rso:RSc0179 hypothetical protein YP_002984485.1 KEGG: cti:RALTA_A1535 glutamine amidotransferases class-II (Gn-AT), YafJ-type YP_002984486.1 KEGG: rso:RSp0994 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; SMART: ATPase AAA YP_002984487.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: rso:RSp0383 flagellar hook-associated protein 2 YP_002984489.1 KEGG: bvi:Bcep1808_5441 hypothetical protein YP_002984490.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: rso:RS01655 hypothetical protein YP_002984491.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0834 hexuronate transporter transmembrane protein YP_002984492.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: rso:RS05363 hypothetical protein YP_002984493.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: rso:RS05364 hypothetical protein YP_002984494.1 KEGG: rso:RSp0830 D-galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein YP_002984495.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: rso:RSp0829 glucarate dehydratase protein YP_002984496.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSp0828 glucarate transporter (D-glucarate permease) transmembrane protein YP_002984497.1 PFAM: aldehyde dehydrogenase; KEGG: rso:RS05368 ketoglutarate semialdehyde dehydrogenase protein YP_002984498.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_002984499.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS05372 transcription regulator protein YP_002984500.1 KEGG: cti:RALTA_B2121 conserved hypothetical protein; exported protein YP_002984501.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: cti:RALTA_B0796 alkanesulfonate transporter, ABC superfamily, peri_binding component YP_002984502.1 PFAM: cytochrome C class I; KEGG: cti:RALTA_B1568 conserved hypothetical protein, haem motif YP_002984503.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: reh:H16_B1868 ABC-type sulfonate transporter ATPase component YP_002984504.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rme:Rmet_2220 binding-protein-dependent transport systems inner membrane component YP_002984505.1 PFAM: NMT1/THI5 like domain protein; KEGG: rme:Rmet_2219 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components YP_002984506.1 PFAM: class II aldolase/adducin family protein; KEGG: bmj:BMULJ_04171 aldolase YP_002984507.1 PFAM: Luciferase-like monooxygenase; KEGG: reu:Reut_B5047 alkanesulfonate monooxygenase YP_002984508.1 PFAM: acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_2217 acyl-CoA dehydrogenase YP_002984509.1 KEGG: reu:Reut_B5045 cysteine dioxygenase type I YP_002984510.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: cti:RALTA_B1561 thiosulfate sulfurtransferase rhodanese-like YP_002984511.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RS01886 hypothetical protein YP_002984512.1 KEGG: rso:RS01894 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002984513.1 KEGG: rso:RS01895 transmembrane protein YP_002984514.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS01896 TonB-dependent receptor signal peptide protein YP_002984515.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002984516.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1068 transcriptional regulator, LysR family YP_002984517.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: reh:H16_B1164 phosphoserine phosphatase YP_002984518.1 TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5887 hypothetical protein YP_002984519.1 TIGRFAM: 2-aminoethylphosphonate ABC transporter, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: reu:Reut_B5525 extracellular solute-binding protein YP_002984520.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate YP_002984521.1 TIGRFAM: 2-aminoethylphosphonate ABC transporter, permease; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: reh:H16_B0110 ABC-type transporter duplicated permease domains YP_002984522.1 KEGG: reh:H16_B0109 ABC-type transporter ATPase component; TIGRFAM: 2-aminoethylphosphonate ABC transporter, ATP-binding protein component; PFAM: ABC transporter; SMART: ATPase AAA YP_002984523.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B5518 LysR family transcriptional regulator YP_002984524.1 KEGG: rso:RS01899 hemagglutinin-related transmembrane protein YP_002984525.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002984526.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RS01900 ferredoxin protein YP_002984527.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002984528.1 PFAM: protein of unknown function DUF962; KEGG: rso:RS01901 hypothetical protein YP_002984529.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rso:RS01902 transcription regulator protein YP_002984530.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002984531.1 PFAM: citrate transporter; KEGG: rso:RS01905 hypothetical protein YP_002984532.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rso:RS01906 hypothetical protein YP_002984533.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_002984534.1 KEGG: rso:RS01908 hypothetical protein YP_002984535.1 KEGG: eugene3.168080001. YP_002984536.1 KEGG: rso:RSc0705 hypothetical protein YP_002984537.1 PFAM: fatty acid hydroxylase; KEGG: rso:RS01698 hypothetical protein YP_002984538.1 PFAM: protein of unknown function DUF985; KEGG: rso:RS01699 hypothetical protein YP_002984539.1 KEGG: rso:RS01700 hypothetical protein YP_002984540.1 KEGG: bcm:Bcenmc03_1903 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent YP_002984541.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: reu:Reut_B3580 hypothetical protein YP_002984542.1 PFAM: porin Gram-negative type; KEGG: dac:Daci_4894 porin YP_002984543.1 PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: reu:Reut_B3579 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_002984544.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_B0738 predicted ring-cleavage extradiol dioxygenase YP_002984545.1 PFAM: aldehyde dehydrogenase; KEGG: cti:RALTA_B0573 NAD+ dependent betaine aldehyde dehydrogenase YP_002984546.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_002984547.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: reh:H16_B0735 acetolactate synthase large subunit YP_002984548.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cti:RALTA_B0570 short-chain dehydrogenase/reductase (SDR) YP_002984549.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reu:Reut_B3598 IclR family transcriptional regulator YP_002984550.1 PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_B3568 alpha/beta hydrolase fold YP_002984551.1 PFAM: cupin; KEGG: cti:RALTA_B0568 conserved hypothetical protein, cupin domain, membrane protein YP_002984552.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_002984553.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B3570 Rieske (2Fe-2S) region YP_002984554.1 KEGG: reh:H16_B0729 hypothetical protein YP_002984555.1 PFAM: regulatory protein TetR; KEGG: reh:H16_B1099 transcriptional regulator, TetR/AcrR-family YP_002984556.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bja:bll0256 transcriptional regulatory protein YP_002984557.1 PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein YP_002984558.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet3229 acetyltransferase YP_002984559.1 KEGG: cvi:CV_0580 hypothetical protein YP_002984560.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cvi:CV_0581 LysR family transcriptional regulator YP_002984561.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_1384 alpha/beta hydrolase fold YP_002984562.1 KEGG: rso:RS01733 hypothetical protein YP_002984563.1 KEGG: rso:RS01734 transmembrane protein YP_002984564.1 PFAM: aminotransferase class IV; KEGG: rso:RS01735 D-alanine aminotransferase (D-aspartate aminotransferase) protein YP_002984565.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS01736 hypothetical protein YP_002984566.1 KEGG: rso:RS01741 signal peptide protein YP_002984567.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rso:RS01742 amino-acid composite ATP-binding transmembrane ABC transporter protein YP_002984568.1 PFAM: ABC transporter; inner-membrane translocator; SMART: ATPase AAA; KEGG: rso:RS01743 amino-acid composite ATP-binding transmembrane ABC transporter protein YP_002984569.1 PFAM: inner-membrane translocator; KEGG: rso:RS01744 amino-acid transmembrane ABC transporter protein YP_002984570.1 PFAM: regulatory protein IclR; SMART: regulatory protein IclR; KEGG: rso:RS01745 transcription regulator protein YP_002984571.1 PFAM: beta-lactamase; KEGG: rso:RS01746 hypothetical protein YP_002984572.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RS01747 hypothetical protein YP_002984573.1 KEGG: rso:RS01748 hypothetical protein YP_002984574.1 PFAM: aldo/keto reductase; KEGG: bpy:Bphyt_5452 aldo/keto reductase YP_002984575.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS01757 transcription regulator transcription regulator protein