-- dump date 20140619_234302 -- class Genbank::CDS -- table cds_note -- id note YP_004267655.1 COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR013317: IPR013159: IPR001957: IPR003593; KEGG: plm:Plim_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004267656.1 KEGG: plm:Plim_3594 hypothetical protein; SPTR: uncharacterized protein YP_004267657.1 COGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR012307: IPR001998: IPR013452; KEGG: plm:Plim_1287 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: Xylose isomerase, bacterial type; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase YP_004267658.1 KEGG: mhy:mhp529 hypothetical protein; SPTR: Odorant receptor YP_004267659.1 InterPro IPR006311; KEGG: pat:Patl_0777 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal; PFAM: PhoD-like phosphatase YP_004267660.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006380: IPR006379; KEGG: rba:RB5200 alpha-amylase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; SPTR: alpha-amylase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB YP_004267661.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296: IPR006380: IPR012822: IPR006379: IPR 012821; KEGG: rba:RB5197 sucrose-phosphate synthase 1; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; glycosyl transferase, group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase 1; TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase domain; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like domain; PFAM: Sucrose synthase; glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, , glycosyltransferase domain; sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial; HAD-superfamily hydrolase, subfamily IIB YP_004267662.1 COGs: COG0366 glycosidase; InterPro IPR006047: IPR006589; KEGG: rba:RB5196 alpha-amylase, amylosucrase; PFAM: glycosyl hydrolase, family 13, catalytic domain; PRIAM: Amylosucrase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: alpha-amylase, amylosucrase; PFAM: alpha amylase, catalytic domain YP_004267663.1 KEGG: plm:Plim_2869 hypothetical protein; SPTR: uncharacterized protein YP_004267664.1 KEGG: mgr:MGG_03757 hypothetical protein; SPTR: uncharacterized protein YP_004267665.1 COGs: COG1657 Squalene cyclase; InterPro IPR001330; KEGG: plm:Plim_0903 squalene cyclase-like protein; PFAM: prenyltransferase/squalene oxidase; PRIAM: Squalene--hopene cyclase; SPTR: Probable squalene-hopene cyclase; PFAM: Pectic acid lyase; TIGRFAM: squalene/oxidosqualene cyclases YP_004267666.1 KEGG: plm:Plim_3312 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Probable ferredoxin MJ0251- Fe-S containing oxidoreductase YP_004267667.1 COGs: COG0509 glycine cleavage system protein H (lipoate-binding); InterPro IPR002930; KEGG: psl:Psta_4504 glycine cleavage H-protein; PFAM: glycine cleavage H-protein; SPTR: glycine cleavage system H protein 1; PFAM: glycine cleavage H-protein YP_004267668.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455: IPR000304; KEGG: plm:Plim_2835 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_004267669.1 COGs: COG1643 HrpA-like helicase; InterPro IPR001650: IPR007502: IPR011709: IPR014001: IPR 003593: IPR010222; KEGG: nhl:Nhal_1290 ATP-dependent helicase HrpA; PFAM: Helicase-associated domain; DNA/RNA helicase, C-terminal; Domain of unknown function DUF1605; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent helicase HrpA; TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF3418); Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA YP_004267670.1 KEGG: psl:Psta_0988 hypothetical protein; SPTR: uncharacterized protein YP_004267671.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterPro IPR000085: IPR003583; KEGG: plm:Plim_2446 helix-hairpin-helix motif protein; SPTR: Holliday junction ATP-dependent DNA helicase ruvA YP_004267672.1 COGs: COG0178 excinuclease ATPase; InterPro IPR003439: IPR003593: IPR004602; KEGG: plm:Plim_1595 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Exinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; TIGRFAM: excinuclease ABC subunit A YP_004267673.1 COGs: COG0129 dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: dihydroxy-acid dehydratase; InterPro IPR000581: IPR004404; KEGG: psl:Psta_3292 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: dihydroxy-acid dehydratase; SPTR: dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_004267674.1 COGs: COG1957 inosine-uridine nucleoside N-ribohydrolase; InterPro IPR001910; KEGG: psl:Psta_4314 inosine/uridine-preferring nucleoside hydrolase; PFAM: inosine/uridine-preferring nucleoside hydrolase; SPTR: inosine/uridine-preferring nucleoside hydrolase; PFAM: inosine-uridine preferring nucleoside hydrolase YP_004267675.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: plm:Plim_3326 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase; SPTR: uncharacterized protein; PFAM: aldehyde dehydrogenase family YP_004267676.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626: IPR001367; KEGG: psl:Psta_4677 ABC-3 protein; PFAM: ABC-3; Iron dependent repressor; SMART: Iron dependent repressor; SPTR: ABC transporter; PFAM: ABC 3 transport family; Iron dependent repressor, metal binding and dimerisation domain YP_004267677.1 COGs: COG0854 pyridoxal phosphate biosynthesis protein; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: naz:Aazo_1500 pyridoxal phosphate biosynthetic protein PdxJ; PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: pyridoxine 5'-phosphate synthase; SPTR: pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PFAM: pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase YP_004267678.1 KEGG: plm:Plim_0664 hypothetical protein; SPTR: uncharacterized protein YP_004267679.1 COGs: COG0594 RNase P protein component; HAMAP: ribonuclease P; InterPro IPR000100; KEGG: plm:Plim_1542 ribonuclease P protein component; PFAM: ribonuclease P; SPTR: ribonuclease P protein component; TIGRFAM: ribonuclease P; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_004267680.1 COGs: COG0759 conserved hypothetical protein; HAMAP: protein of unknown function DUF37; InterPro IPR002696; KEGG: rmr:Rmar_0809 protein of unknown function DUF37; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein PM8797T_24471; TIGRFAM: protein of unknown function DUF37; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_004267681.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: plm:Plim_3385 protein of unknown function UPF0027; PFAM: Uncharacterised protein family UPF0027; SPTR: RtcB protein; PFAM: Uncharacterized protein family UPF0027 YP_004267682.1 KEGG: plm:Plim_0885 protein of unknown function DUF1568; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004267683.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: rba:RB5135 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004267684.1 InterPro IPR002541; KEGG: plm:Plim_1297 cytochrome C assembly protein; PFAM: cytochrome C assembly protein; SPTR: cytochrome C assembly protein; PFAM: cytochrome C assembly protein YP_004267685.1 COGs: COG0373 glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR015895: IPR006151: IPR015896: IPR000343; KEGG: plm:Plim_1296 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; SPTR: glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: glutamyl-tRNAGlu reductase, N-terminal domain; shikimate / quinate 5-dehydrogenase; glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase YP_004267686.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: plm:Plim_0631 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase YP_004267687.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402; KEGG: psl:Psta_4600 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004267688.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR013216; KEGG: psl:Psta_1671 protein of unknown function Met10; PFAM: methyltransferase type 11; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004267689.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mrd:Mrad2831_4421 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase YP_004267690.1 COGs: COG2719 conserved hypothetical protein; InterPro IPR007390; KEGG: plm:Plim_2992 SpoVR family protein; PFAM: sporulation stage V, protein R; SPTR: SpoVR; PFAM: SpoVR like protein YP_004267691.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: npu:Npun_F3750 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF820) YP_004267692.1 COGs: COG2718 conserved hypothetical protein; InterPro IPR006698; KEGG: plm:Plim_2990 protein of unknown function DUF444; PFAM: protein of unknown function DUF444; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF444) YP_004267693.1 COGs: COG2766 Ser protein kinase; InterPro IPR013153: IPR010650; KEGG: plm:Plim_2989 PrkA AAA domain protein; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; SPTR: serine protein kinase, PrkA; PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain YP_004267694.1 COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase AroB, subgroup; InterPro IPR002658: IPR016037; KEGG: plm:Plim_0047 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004267695.1 InterPro IPR001611: IPR003590: IPR006553; KEGG: ngr:NAEGRDRAFT_54915 hypothetical protein; PFAM: Leucine-rich repeat; SPTR: regulatory subunit; PFAM: Leucine Rich Repeat YP_004267696.1 KEGG: plm:Plim_0146 hypothetical protein; SPTR: uncharacterized protein YP_004267697.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004267698.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004267699.1 KEGG: lbc:LACBIDRAFT_315993 hypothetical protein; SPTR: uncharacterized protein YP_004267700.1 KEGG: psl:Psta_4332 phospholipase/carboxylesterase; SPTR: phospholipase/carboxylesterase YP_004267701.1 InterPro IPR002502: IPR006619; KEGG: plm:Plim_4129 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; peptidoglycan recognition protein, metazoa/bacteria; SPTR: Probable N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004267702.1 KEGG: psl:Psta_4193 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF87 YP_004267703.1 KEGG: rba:RB2075 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3467) YP_004267704.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: gvi:gll0925 hypothetical protein; PFAM: NUDIX hydrolase domain; SPTR: ADP-ribose pyrophosphatase; PFAM: NUDIX domain YP_004267705.1 KEGG: plm:Plim_3660 hypothetical protein; SPTR: uncharacterized protein YP_004267706.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: rba:RB5766 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: NADH dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004267707.1 COGs: COG0659 sulfate permease and related transporter (MFS superfamily); InterPro IPR011547: IPR002645; KEGG: rba:RB10140 sulfate permease family protein; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate permease family protein; PFAM: sulfate transporter family; STAS domain YP_004267708.1 InterPro IPR011467; KEGG: plm:Plim_2468 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1573) YP_004267709.1 KEGG: plm:Plim_4109 hypothetical protein; SPTR: uncharacterized protein YP_004267710.1 KEGG: plm:Plim_2213 hypothetical protein; SPTR: uncharacterized protein YP_004267711.1 KEGG: mmc:Mmcs_4669 ATPase; SPTR: uncharacterized protein YP_004267712.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845: IPR011268: IPR011270; KEGG: plm:Plim_2216 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; inosine guanosine/xanthosine phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_004267713.1 COGs: COG0062 conserved hypothetical protein; InterPro IPR004443; KEGG: rba:RB9218 hypothetical protein; PFAM: YjeF-related protein, N-terminal; SPTR: uncharacterized protein; TIGRFAM: YjeF-related protein, N-terminal; PFAM: YjeF-related protein N-terminus; TIGRFAM: yjeF N-terminal region YP_004267714.1 KEGG: plm:Plim_4166 hypothetical protein; SPTR: uncharacterized protein YP_004267715.1 COGs: COG1515 deoxyinosine 3'endonuclease (endonuclease V); InterPro IPR014048: IPR007581; KEGG: abi:Aboo_0455 methylated-DNA/protein-cysteine methyltransferase; PFAM: endonuclease V; methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PRIAM: deoxyribonuclease V; SPTR: O6-methylguanine-DNA methyltransferase/endonuclease V; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; endonuclease V YP_004267716.1 KEGG: rba:RB7777 NosR regulatory protein; SPTR: FMN-binding domain protein YP_004267717.1 COGs: COG5361 conserved hypothetical protein; InterPro IPR010679: IPR010621; KEGG: dba:Dbac_1083 protein of unknown function DUF1214; PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1214); protein of unknown function (DUF1254) YP_004267718.1 KEGG: plm:Plim_0155 hypothetical protein; SPTR: uncharacterized protein YP_004267719.1 InterPro IPR011020; KEGG: plm:Plim_0154 HTTM domain protein; SMART: HTTM; SPTR: uncharacterized protein; PFAM: Vitamin K-dependent gamma-carboxylase YP_004267720.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: plm:Plim_3596 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase YP_004267721.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: rba:RB1063 oxidoreductase; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004267722.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284; KEGG: psl:Psta_3005 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004267723.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR019304: IPR006124: IPR004456; KEGG: plm:Plim_0773 phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme; PRIAM: phosphoglycerate mutase; SPTR: Cofactor-independent phosphoglycerate mutase; TIGRFAM: Cofactor-independent phosphoglycerate mutase, archaeal; PFAM: metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form YP_004267724.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR019546: IPR000683: IPR006311; KEGG: plm:Plim_0111 oxidoreductase; PFAM: oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004267725.1 COGs: COG3386 gluconolactonase; InterPro IPR013658; KEGG: rba:RB12740 gluconolactonase [precursor]; PFAM: SMP-30/gluconolaconase/LRE-like region; PRIAM: gluconolactonase; SPTR: gluconolactonase (Precursor); PFAM: SMP-30/gluconolaconase/LRE-like region YP_004267726.1 KEGG: plm:Plim_2256 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004267727.1 KEGG: plm:Plim_3958 hypothetical protein; SPTR: uncharacterized protein YP_004267728.1 InterPro IPR011465; KEGG: plm:Plim_2255 protein of unknown function DUF1571; PFAM: protein of unknown function DUF1571; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1571) YP_004267729.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: plm:Plim_0391 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004267730.1 KEGG: psl:Psta_0701 hypothetical protein; SPTR: uncharacterized protein YP_004267731.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: cpi:Cpin_2743 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004267732.1 COGs: COG0665 glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: psl:Psta_1256 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: D-amino-acid dehydrogenase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004267733.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: chl:Chy400_2009 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: histone deacetylase; SPTR: histone deacetylase superfamily; PFAM: histone deacetylase domain YP_004267735.1 InterPro IPR018958; KEGG: bcx:BCA_3113 SMI1 / KNR4 family; PFAM: cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR: SMI1/KNR4 family protein; PFAM: SMI1 / KNR4 family YP_004267736.1 KEGG: tro:trd_1194 single-stranded-DNA-specific exonuclease RecJ; SPTR: uncharacterized protein YP_004267737.1 KEGG: psl:Psta_3949 transmembrane protein; SPTR: uncharacterized protein YP_004267738.1 COGs: COG2232 ATP-dependent carboligase related to biotin carboxylase; InterPro IPR003806; KEGG: psl:Psta_2471 protein of unknown function DUF201; PFAM: ATP-grasp fold, DUF201-type; SPTR: uncharacterized protein; PFAM: ATP-grasp domain YP_004267739.1 COGs: COG1795 conserved hypothetical protein; InterPro IPR014826; KEGG: plm:Plim_1285 formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme; SPTR: Formaldehyde-activating enzyme; TIGRFAM: Formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); TIGRFAM: formaldehyde-activating enzyme YP_004267740.1 InterPro IPR015259: IPR005097; KEGG: psl:Psta_2659 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: methylene-tetrahydromethanopterin dehydrogenase, N-terminal; saccharopine dehydrogenase / Homospermidine synthase; PRIAM: methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: MtdA bifunctional protein; PFAM: methylene-tetrahydromethanopterin dehydrogenase, N-terminal YP_004267741.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184: IPR016474; KEGG: plm:Plim_2365 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004267742.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638: IPR004393; KEGG: plm:Plim_0194 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004267743.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: psl:Psta_2647 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich domain YP_004267744.1 KEGG: plm:Plim_0130 hypothetical protein; SPTR: uncharacterized protein YP_004267745.1 COGs: COG0188 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) subunit alpha; InterPro IPR002205: IPR006691; KEGG: plm:Plim_0106 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: type II DNA topoisomerase, subunit alpha; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A YP_004267746.1 COGs: COG0187 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) subunit beta; InterPro IPR003594: IPR013506: IPR006171: IPR002288: IPR 001241; KEGG: plm:Plim_0105 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase subunit beta, carboxyl terminus YP_004267747.1 COGs: COG0717 deoxycytidine deaminase; HAMAP: deoxycytidine triphosphate deaminase; InterPro IPR011962; KEGG: plm:Plim_0612 deoxycytidine triphosphate deaminase; SPTR: deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004267748.1 KEGG: plm:Plim_2478 hypothetical protein; SPTR: uncharacterized protein; PFAM: PSP1 C-terminal conserved region YP_004267749.1 KEGG: plm:Plim_2744 hypothetical protein; SPTR: uncharacterized protein YP_004267750.1 InterPro IPR002110; KEGG: pwa:Pecwa_1097 ankyrin; PFAM: ankyrin repeat; SMART: ankyrin repeat; SPTR: ankyrin; PFAM: ankyrin repeat YP_004267751.1 KEGG: ssa:SSA_1274 hypothetical protein; SPTR: uncharacterized protein YP_004267752.1 KEGG: psl:Psta_0711 hypothetical protein; SPTR: uncharacterized protein YP_004267753.1 KEGG: nvi:100123288 serine protease homolog 127; SPTR: uncharacterized protein YP_004267755.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: plm:Plim_1379 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: peptidase S1 and S6 chymotrypsin/Hap; PFAM: Trypsin YP_004267756.1 COGs: COG0657 esterase/lipase; InterPro IPR002018; KEGG: rba:RB3413 lipase/esterase; PFAM: carboxylesterase, type B; SPTR: alpha/beta hydrolase fold-3 domain protein; PFAM: prolyl oligopeptidase family; alpha/beta hydrolase fold YP_004267757.1 KEGG: psl:Psta_3882 hypothetical protein; SPTR: uncharacterized protein YP_004267758.1 InterPro IPR010496: IPR011658; KEGG: rba:RB9439 large multi-functional protein; PFAM: protein of unknown function DUF1080; SMART: PA14; SPTR: large multi-functional protein; PFAM: cytochrome C; PA14 domain; Domain of Unknown Function (DUF1080) YP_004267759.1 InterPro IPR002645; KEGG: plm:Plim_0752 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004267760.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482; KEGG: plm:Plim_0753 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: type II secretion system protein E; PFAM: type II/IV secretion system protein YP_004267761.1 COGs: COG2001 conserved hypothetical protein; InterPro IPR020603; KEGG: plm:Plim_2799 protein of unknown function UPF0040; PFAM: MraZ domain; SPTR: uncharacterized protein; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004267762.1 InterPro IPR011446; KEGG: plm:Plim_3140 protein of unknown function DUF1551; PFAM: protein of unknown function DUF1551; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1551) YP_004267763.1 KEGG: plm:Plim_2976 hypothetical protein; SPTR: uncharacterized protein YP_004267764.1 COGs: COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent); InterPro IPR003726; KEGG: scl:sce0497 homocysteine S-methyltransferase family protein; PFAM: Homocysteine S-methyltransferase; SPTR: homocysteine S-methyltransferase family protein; PFAM: Homocysteine S-methyltransferase YP_004267765.1 COGs: COG0168 Trk-type K+ transporters membrane components; InterPro IPR003445; KEGG: rba:RB7675 trk potassium uptake system protein (TrkH); PFAM: Cation transporter; SPTR: TRK potassium uptake system protein (TrkH); PFAM: Cation transporter; TIGRFAM: potassium uptake protein, TrkH family YP_004267766.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: plm:Plim_2946 beta-lactamase; SPTR: uncharacterized protein; PFAM: metallo-beta-lactamase superfamily YP_004267767.1 COGs: COG1030 membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: plm:Plim_0857 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: YqeZ; PFAM: NfeD-like YP_004267768.1 COGs: COG4864 conserved hypothetical protein; HAMAP: UPF0365 protein; KEGG: plm:Plim_0858 hypothetical protein; SPTR: uncharacterized protein; PFAM: SigmaW regulon antibacterial YP_004267769.1 KEGG: plm:Plim_0859 hypothetical protein; SPTR: uncharacterized protein YP_004267770.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_4196 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004267771.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1741 FOG: WD40 repeat-like protein; PFAM: pyrrolo-quinoline quinone repeat; SPTR: pyrrolo-quinoline quinone YP_004267772.1 InterPro IPR004843; KEGG: zpr:ZPR_0251 secreted protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase YP_004267773.1 COGs: COG2985 permease; InterPro IPR006512: IPR006037; KEGG: rba:RB4869 permease; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004267774.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005835: IPR001451: IPR011831; KEGG: plm:Plim_1974 glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: glucose-1-phosphate adenylyltransferase; SPTR: glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_004267775.1 COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: plm:Plim_0055 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: uncharacterized protein; PFAM: FHA domain YP_004267776.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321; KEGG: plm:Plim_1933 twitching motility protein; PFAM: type II secretion system protein E; SPTR: Twitching motility protein PilT; TIGRFAM: pilus retraction protein PilT; PFAM: type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004267777.1 KEGG: rba:RB138 hypothetical protein; SPTR: uncharacterized protein; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004267778.1 KEGG: plm:Plim_3161 hypothetical protein; SPTR: uncharacterized protein; PFAM: TM2 domain YP_004267779.1 KEGG: plm:Plim_3160 hypothetical protein; SPTR: uncharacterized protein YP_004267780.1 COGs: COG0182 translation initiation factor 2subunit beta eIF-2B alpha/beta/delta family; HAMAP: methylthioribose-1-phosphate isomerase; InterPro IPR000649: IPR005251: IPR011559; KEGG: psl:Psta_1975 translation initiation factor, aIF-2BI family; PFAM: Initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_004267781.1 COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: plm:Plim_1692 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS YP_004267782.1 COGs: COG1345 flagellar capping protein; InterPro IPR003481: IPR010809; KEGG: plm:Plim_1693 flagellar hook-associated 2 domain protein; PFAM: flagellar hook-associated 2, C-terminal; flagellar hook-associated protein 2, N-terminal; SPTR: flagellar hook-associated 2 domain protein; PFAM: flagellar hook-associated protein 2 C-terminus YP_004267783.1 KEGG: sus:acid_2344 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: Macrocin-O-methyltransferase (TylF) YP_004267784.1 KEGG: dsa:Desal_2864 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sulfotransferase family YP_004267785.1 InterPro IPR001440: IPR001173: IPR013216: IPR019734; KEGG: mca:MCA1511 TPR domain-containing protein; PFAM: methyltransferase type 11; glycosyl transferase, family 2; Tetratricopeptide TPR-1; SPTR: TPR domain protein; PFAM: glycosyl transferase family 2; Tetratricopeptide repeat YP_004267786.1 COGs: COG0457 FOG: TPR repeat; InterPro IPR001440: IPR000863: IPR019734; KEGG: bra:BRADO3973 hypothetical protein; PFAM: Sulfotransferase domain; Tetratricopeptide TPR-1; SPTR: TPR repeat protein; PFAM: Sulfotransferase domain; Tetratricopeptide repeat YP_004267787.1 KEGG: psl:Psta_4415 hypothetical protein; SPTR: uncharacterized protein YP_004267788.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: plm:Plim_3668 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase pknA; PFAM: protein kinase domain YP_004267789.1 COGs: COG0503 adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; HAMAP: adenine phosphoribosyl transferase; InterPro IPR000836: IPR005764; KEGG: rba:RB5847 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase YP_004267790.1 KEGG: plm:Plim_3188 amidohydrolase; SPTR: uncharacterized protein YP_004267791.1 KEGG: plm:Plim_2060 hypothetical protein; SPTR: uncharacterized protein YP_004267792.1 InterPro IPR010869: IPR006311; KEGG: plm:Plim_2793 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004267793.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: plm:Plim_3722 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Probable response regulator; PFAM: Response regulator receiver domain YP_004267794.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR007627: IPR007630: IPR014284; KEGG: rba:RB1392 RNA polymerase sigma 70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: Probable RNA polymerase sigma 70; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004267795.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: vsp:VS_II0883 conserved hypothetical protein- fasciclin domain; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: uncharacterized protein; PFAM: Fasciclin domain YP_004267796.1 KEGG: psl:Psta_1633 DNA binding domain protein, excisionase family; SPTR: uncharacterized protein YP_004267797.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sus:acid_7528 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: oxidoreductase; PFAM: protein of unknown function (DUF2867); NmrA-like family YP_004267798.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267799.1 KEGG: psl:Psta_4523 hypothetical protein; SPTR: uncharacterized protein YP_004267800.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR011418; KEGG: plm:Plim_3631 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Probable D-tagatose 3-epimerase; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel YP_004267801.1 InterPro IPR011521; KEGG: plm:Plim_0937 YTV domain protein; PFAM: YTV; SPTR: uncharacterized protein; PFAM: YTV YP_004267802.1 KEGG: pap:PSPA7_2298 acyl-CoA thioesterase I; SPTR: acyl-CoA thioesterase I YP_004267803.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151: IPR004447; KEGG: plm:Plim_0662 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: carboxyl-terminal processing protease; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004267804.1 KEGG: plm:Plim_0945 hypothetical protein; SPTR: uncharacterized protein YP_004267805.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR009042: IPR007627: IPR007624: IPR007630: IPR 014284; KEGG: plm:Plim_0893 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004267806.1 KEGG: dpo:Dpse_GA23761 GA23761 gene product from transcript GA23761-RA; SPTR: origin recognition complex 1 YP_004267807.1 COGs: COG0228 ribosomal protein S16; HAMAP: ribosomal protein S16; InterPro IPR000307; KEGG: rba:RB12824 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; manually curated; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004267808.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR016009: IPR002649; KEGG: plm:Plim_0179 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004267809.1 COGs: COG0335 ribosomal protein L19; HAMAP: ribosomal protein L19; InterPro IPR001857; KEGG: plm:Plim_0178 ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004267810.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: plm:Plim_0460 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein DSM3645_06709; TIGRFAM: Uncharacterised protein family UPF0102; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252 YP_004267811.1 COGs: COG0139 phosphoribosyl-AMP cyclohydrolase; HAMAP: phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: rpb:RPB_2185 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: phosphoribosyl-AMP cyclohydrolase; SPTR: phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase YP_004267812.1 InterPro IPR013427; KEGG: psl:Psta_0896 heme-binding protein; SPTR: Probable L-sorbosone dehydrogenase; TIGRFAM: Haem-binding domain, PFAM: cytochrome C; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type YP_004267813.1 KEGG: plm:Plim_2151 transcription regulator; SPTR: transcription regulator; manually curated YP_004267814.1 KEGG: plm:Plim_2152 hypothetical protein; SPTR: uncharacterized protein YP_004267815.1 KEGG: fnu:FN1246 lipooligosaccharide cholinephosphotransferase; SPTR: alpha-cyclodextrinase YP_004267816.1 KEGG: mdo:100010341 hypothetical protein LOC100010341; SPTR: Envelope glycoprotein YP_004267817.1 KEGG: cff:CFF8240_0173 cobalt ABC transporter CbiQ, permease subunit, SPTR: Monocarboxylate permease-like protein YP_004267818.1 KEGG: ana:all0283 WD-40 repeat-containing protein; SPTR: uncharacterized protein YP_004267819.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transporter; InterPro IPR011659; KEGG: aba:acid345_3484 WD-40-like beta propeller repeat-containing protein; SPTR: protein tolB; PFAM: WD40-like beta Propeller Repeat YP_004267820.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: rba:RB11650 NADH-dependent deydrogenase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent deydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004267821.1 COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153; KEGG: gvi:gll1759 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Gll1759 protein; PFAM: Sodium/hydrogen exchanger family; TC 2.A.36 YP_004267822.1 KEGG: hwa:HQ3482A hypothetical protein; SPTR: oligopeptide/dipeptide ABC transporter permease YP_004267823.1 KEGG: ote:Oter_1763 hypothetical protein; SPTR: uncharacterized protein YP_004267824.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_4602 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Sulfatase; PFAM: Sulfatase YP_004267825.1 KEGG: dka:DKAM_0979 pullulanase, glycoside hydrolase, family 57; SPTR: uncharacterized protein YP_004267826.1 KEGG: vsp:VS_0882 septum site-determining protein MinD; SPTR: septum site-determining protein minD (cell division inhibitor minD) YP_004267827.1 KEGG: plm:Plim_1019 protein of unknown function DUF1559; SPTR: uncharacterized protein YP_004267828.1 KEGG: azc:AZC_3917 hypothetical protein; SPTR: uncharacterized protein YP_004267829.1 KEGG: afr:AFE_1212 hypothetical protein; SPTR: uncharacterized protein YP_004267830.1 COGs: COG1943 transposase and inactivated derivatives; KEGG: plm:Plim_2531 transposase; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004267831.1 InterPro IPR007421; KEGG: mno:Mnod_5398 transcriptional regulator; PFAM: ATPase, AAA-4; SPTR: Gp67; PFAM: Divergent AAA domain YP_004267832.1 COGs: COG0191 fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR006411; KEGG: plm:Plim_2153 fructose-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: fructose-bisphosphate aldolase; SPTR: fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; PFAM: fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YP_004267833.1 KEGG: plm:Plim_0040 hypothetical protein; SPTR: uncharacterized protein YP_004267834.1 KEGG: cbr:CBG06802 C. briggsae CBR-NHL-1 protein; SPTR: integral membrane transporter YP_004267835.1 COGs: COG3253 conserved hypothetical protein; InterPro IPR010644; KEGG: plm:Plim_3790 chlorite dismutase; PFAM: chlorite dismutase; SPTR: chlorite dismutase; PFAM: chlorite dismutase YP_004267836.1 InterPro IPR001387; KEGG: sen:SACE_0069 regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix YP_004267837.1 SPTR: uncharacterized protein YP_004267838.1 KEGG: bpt:Bpet0956 hypothetical protein; SPTR: uncharacterized protein YP_004267839.1 KEGG: xbo:XBJ1_3508 NrgA YP_004267841.1 KEGG: ele:Elen_1727 UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase YP_004267842.1 COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: mms:mma_2224 pentapeptide repeat-containing protein; PFAM: Pentapeptide repeat; SPTR: uncharacterized protein; PFAM: Pentapeptide repeats (8 copies) YP_004267843.1 KEGG: sce:YLR450W Hmg2p; SPTR: chromosome undetermined SCAF15099, whole genome shotgun sequence YP_004267844.1 KEGG: pfs:pQBR0443 RsmA/CsrA family carbon storage translational regulator; SPTR: carbon storage regulator homolog; PFAM: Global regulator protein family YP_004267845.1 KEGG: tro:trd_0726 alanyl-tRNA synthetase; SPTR: uncharacterized protein YP_004267846.1 KEGG: sta:STHERM_c00800 hypothetical protein; SPTR: WD-40 repeat family protein YP_004267847.1 KEGG: hmu:Hmuk_0986 alpha/beta hydrolase fold protein; SPTR: Bromodomain containing protein YP_004267848.1 KEGG: mag:amb0352 hypothetical protein; SPTR: uncharacterized protein YP_004267849.1 KEGG: bmy:Bm1_37415 protein kinase domain containing protein; SPTR: protein kinase domain containing protein YP_004267850.1 InterPro IPR007731; KEGG: mgm:Mmc1_2920 hypothetical protein; PFAM: protein of unknown function DUF669; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF669) YP_004267851.1 COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935: IPR001650: IPR014001; KEGG: mag:amb0356 superfamily II DNA/RNA helicase; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; type III restriction enzyme, res subunit YP_004267852.1 InterPro IPR015330: IPR014820; KEGG: mgm:Mmc1_2915 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 1; SPTR: uncharacterized protein; PFAM: Bifunctional DNA primase/polymerase, N-terminal; Primase C terminal 1 (PriCT-1) YP_004267853.1 KEGG: rpf:Rpic12D_4344 integrase/recombinase protein; SPTR: Integrase/recombinase protein YP_004267854.1 KEGG: ect:ECIAI39_2692 conserved hypothetical protein from phage origin; SPTR: uncharacterized protein YP_004267855.1 KEGG: tpr:Tpau_2008 hypothetical protein; SPTR: uncharacterized protein YP_004267856.1 KEGG: lsp:Bsph_1223 transglycosylase; SPTR: transglycosylase YP_004267857.1 KEGG: aco:Amico_1570 basic membrane lipoprotein; SPTR: Basic membrane lipoprotein YP_004267858.1 KEGG: mar:MAE_03610 hypothetical protein; SPTR: Tetratricopeptide repeat protein YP_004267859.1 KEGG: pmm:PMM0055 hypothetical protein; SPTR: uncharacterized protein YP_004267860.1 KEGG: ava:Ava_4526 hypothetical protein; SPTR: uncharacterized protein YP_004267861.1 KEGG: glo:Glov_0494 hypothetical protein; SPTR: uncharacterized protein YP_004267862.1 KEGG: tmz:Tmz1t_0179 histidine kinase; SPTR: histidine kinase YP_004267863.1 KEGG: nfi:NFIA_015970 actin-interacting protein (Bud6/Aip3), SPTR: Actin-interacting protein (Bud6/Aip3) YP_004267864.1 KEGG: enc:ECL_04451 Contact-dependent inhibitor A; SPTR: Contact-dependent inhibitor A YP_004267865.1 KEGG: caa:Caka_1233 hypothetical protein; SPTR: uncharacterized protein YP_004267866.1 KEGG: gau:GAU_2271 hypothetical protein; SPTR: uncharacterized protein YP_004267867.1 KEGG: msv:Mesil_1196 hypothetical protein; SPTR: uncharacterized protein YP_004267868.1 InterPro IPR006517; KEGG: mlo:mlr8003 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Phage uncharacterised protein, C-terminal; PFAM: terminase-like family; TIGRFAM: phage uncharacterized protein ( large terminase), C-terminal domain YP_004267869.1 KEGG: plm:Plim_3545 portal protein lambda; SPTR: uncharacterized protein; PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family YP_004267870.1 KEGG: bcq:BCQ_PT37 minor head protein; SPTR: Phage head morphogenesis protein, SPP1 gp7; PFAM: Phage Mu protein F like protein YP_004267871.1 KEGG: sat:SYN_00205 phosphate transport regulator; SPTR: phosphate transport regulator YP_004267872.1 KEGG: plm:Plim_3547 hypothetical protein; SPTR: uncharacterized protein YP_004267873.1 KEGG: rba:RB9053 hypothetical protein; SPTR: uncharacterized protein YP_004267874.1 KEGG: plm:Plim_3549 hypothetical protein; SPTR: uncharacterized protein YP_004267875.1 KEGG: mgr:MGG_04988 hypothetical protein; SPTR: uncharacterized protein YP_004267876.1 KEGG: ncr:NCU09428 hypothetical protein; SPTR: uncharacterized protein YP_004267877.1 KEGG: vha:VIBHAR_07066 hypothetical protein; SPTR: uncharacterized protein YP_004267878.1 KEGG: aag:AaeL_AAEL005552 succinyl-coa synthetase beta chain; SPTR: uncharacterized protein YP_004267879.1 KEGG: sat:SYN_02301 Mu-like prophage FluMu G protein; SPTR: Mu-like prophage Flumu G protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis ( tail completion) protein YP_004267880.1 KEGG: mhr:MHR_0514 pyruvate dehydrogenase E3 component dihydrolipoamide dehydrogenase; SPTR: DNA polymerase YP_004267881.1 KEGG: tme:Tmel_1452 hypothetical protein; SPTR: uncharacterized protein YP_004267882.1 KEGG: edi:EDI_221760 endoplasmin precursor; SPTR: uncharacterized protein YP_004267883.1 KEGG: lbz:LbrM20_V2.2080 hypothetical protein; SPTR: Adventurous gliding protein Z YP_004267884.1 KEGG: mgm:Mmc1_1489 multi-sensor signal transduction histidine kinase; SPTR: uncharacterized protein YP_004267885.1 KEGG: rso:RSc0115 hemagglutinin-related protein; SPTR: uncharacterized protein YP_004267886.1 KEGG: azc:AZC_1915 hypothetical protein; SPTR: Thrombospondin N-terminal-like domain protein YP_004267887.1 KEGG: cwo:Cwoe_5320 AMP-dependent synthetase and ligase; SPTR: uncharacterized protein YP_004267888.1 KEGG: ter:Tery_1903 amino acid permease-associated region; SPTR: Amino acid permease-associated region YP_004267889.1 KEGG: tgo:TGME49_041870 glutamyl-tRNA synthetase, SPTR: glutamyl-tRNA synthetase 1, 2 YP_004267890.1 KEGG: plm:Plim_3066 hypothetical protein; SPTR: uncharacterized protein YP_004267891.1 KEGG: mex:Mext_3785 chromosome segregation ATPase-like protein; SPTR: chromosome segregation ATPase-like protein YP_004267892.1 KEGG: hth:HTH_0534 hypothetical protein; SPTR: uncharacterized protein YP_004267893.1 InterPro IPR001387; KEGG: kol:Kole_1307 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SPTR: Sea36; PFAM: Helix-turn-helix YP_004267895.1 KEGG: aha:AHA_0397 msha pilin protein mshd; SPTR: uncharacterized protein YP_004267896.1 KEGG: spc:Sputcn32_3939 DNA methylase N-4/N-6 domain-containing protein; SPTR: Choline dehydrogenase YP_004267897.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: ssm:Spirs_2502 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; SPTR: uncharacterized protein; PFAM: phosphoadenosine phosphosulfate reductase family YP_004267898.1 KEGG: api:100164524 similar to Formyltetrahydrofolate dehydrogenase; SPTR: Streptococcal protective antigen YP_004267899.1 KEGG: ssm:Spirs_2504 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csf3 family YP_004267900.1 KEGG: ssm:Spirs_2505 hypothetical protein; SPTR: uncharacterized protein YP_004267901.1 KEGG: fgr:FG04931.1 hypothetical protein; SPTR: secreted protein YP_004267902.1 KEGG: ssm:Spirs_2507 hypothetical protein; SPTR: uncharacterized protein ENSRNOP00000005775 YP_004267903.1 InterPro IPR002104; KEGG: afw:Anae109_3980 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase family protein; PFAM: Phage integrase family YP_004267904.1 KEGG: pol:Bpro_4932 hypothetical protein; SPTR: GumL protein; PFAM: polysaccharide pyruvyl transferase YP_004267905.1 KEGG: plm:Plim_2506 hypothetical protein; SPTR: uncharacterized protein YP_004267906.1 KEGG: plm:Plim_2507 hypothetical protein; SPTR: uncharacterized protein YP_004267907.1 COGs: COG1201 Lhr-like helicase; InterPro IPR011545: IPR001650: IPR013701: IPR014001: IPR 003593; KEGG: psl:Psta_1597 DEAD/H associated domain protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase-like protein; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase YP_004267908.1 KEGG: kko:Kkor_1166 cell division protein ZipA; SPTR: cell division protein zipA; PFAM: ZipA, C-terminal FtsZ-binding domain YP_004267909.1 KEGG: bcy:Bcer98_1974 hypothetical protein; SPTR: uncharacterized protein YP_004267910.1 KEGG: cbt:CLH_2813 phosphoglycerate kinase; SPTR: uncharacterized protein YP_004267911.1 KEGG: pto:PTO1084 sugar transporter; SPTR: uncharacterized protein YP_004267912.1 KEGG: spl:Spea_3749 hypothetical protein; SPTR: uncharacterized protein YP_004267913.1 KEGG: cbk:CLL_A1621 hypothetical protein; SPTR: uncharacterized protein YP_004267914.1 KEGG: ctp:CTRG_03731 hypothetical protein; SPTR: NADH-ubiquinone oxidoreductase 30.4 kDa subunit YP_004267915.1 InterPro IPR012669; KEGG: psl:Psta_1281 hypothetical protein; PFAM: Pectic acid lyase; SPTR: uncharacterized protein; PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family YP_004267916.1 InterPro IPR011701; KEGG: plm:Plim_2212 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004267917.1 InterPro IPR012902; KEGG: plm:Plim_0162 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267918.1 InterPro IPR012902; KEGG: plm:Plim_0161 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267919.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221: IPR004101: IPR005762; KEGG: plm:Plim_1571 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004267920.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: plm:Plim_2179 methyltransferase small; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004267921.1 KEGG: mau:Micau_5026 hypothetical protein; SPTR: uncharacterized protein YP_004267922.1 KEGG: gvi:gll1433 hypothetical protein; SPTR: Gll1433 protein YP_004267923.1 KEGG: cjk:jk1129 dihydrodipicolinate synthase; SPTR: uncharacterized protein YP_004267924.1 KEGG: syd:Syncc9605_2510 regulatory protein; SPTR: PhcB, RSc2735; regulatory protein; PFAM: lysophospholipase YP_004267925.1 KEGG: llo:LLO_2034 hypothetical protein; SPTR: uncharacterized protein YP_004267926.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267927.1 KEGG: plm:Plim_1453 hypothetical protein; SPTR: uncharacterized protein YP_004267928.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: lch:Lcho_1847 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; PFAM: UPF0126 domain YP_004267929.1 COGs: COG1477 membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: sus:acid_6143 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: membrane-associated lipoprotein involved in thiamine biosynthesis; manually curated; PFAM: ApbE family YP_004267930.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: plm:Plim_0907 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; manually curated; PFAM: Formylglycine-generating sulfatase enzyme YP_004267931.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR019546: IPR000683: IPR006311; KEGG: plm:Plim_0037 oxidoreductase; PFAM: oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004267932.1 InterPro IPR012902; KEGG: plm:Plim_2813 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267933.1 InterPro IPR012902; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267934.1 KEGG: plm:Plim_2646 hypothetical protein; SPTR: uncharacterized protein YP_004267935.1 KEGG: plm:Plim_2645 hypothetical protein; SPTR: uncharacterized protein YP_004267936.1 InterPro IPR001478; KEGG: mmx:MmarC6_1235 SCP-like extracellular; SMART: PDZ/DHR/GLGF; SPTR: uncharacterized protein YP_004267937.1 COGs: COG0475 Kef-type K+ transporters membrane components; InterPro IPR006153: IPR003148; KEGG: ppd:Ppro_0784 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; SPTR: Sodium/hydrogen exchanger; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family YP_004267938.1 InterPro IPR000182; KEGG: plm:Plim_1970 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004267939.1 KEGG: plm:Plim_2771 hypothetical protein; SPTR: uncharacterized protein YP_004267940.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402; KEGG: plm:Plim_1715 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase family hydrolase YP_004267941.1 COGs: COG2943 membrane glycosyltransferase; KEGG: plm:Plim_0891 glycosyl transferase family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004267943.1 COGs: COG3131 Periplasmic glucans biosynthesis protein; InterPro IPR007444; KEGG: plm:Plim_0888 periplasmic glucan biosynthesis protein MdoG; PFAM: glucan biosynthesis, periplasmic, MdoG C-terminal; SPTR: Periplasmic glucan biosynthesis protein MdoG; PFAM: Periplasmic glucan biosynthesis protein, MdoG YP_004267944.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR001789; KEGG: psl:Psta_1412 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: sensory transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004267945.1 InterPro IPR010869: IPR006311; KEGG: rba:RB12102 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004267946.1 InterPro IPR011444; KEGG: rba:RB12097 signal peptide; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004267947.1 COGs: COG0768 cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: plm:Plim_1789 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein, transpeptidase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding protein dimerisation domain YP_004267948.1 KEGG: dar:Daro_3505 cell division protein, FtsL -like; SPTR: cell division protein, FtsL-like YP_004267949.1 InterPro IPR018392: IPR002482; KEGG: plm:Plim_1787 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: peptidoglycan-binding LysM; PFAM: LysM domain YP_004267950.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: plm:Plim_2101 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004267951.1 InterPro IPR010869; KEGG: rba:RB2170 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004267952.1 InterPro IPR011444; KEGG: rba:RB6288 signal peptide; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004267953.1 COGs: COG0441 threonyl-tRNA synthetase; InterPro IPR004095: IPR012947: IPR002314: IPR004154: IPR 002320; KEGG: plm:Plim_4204 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; threonyl/alanyl tRNA synthetase, SAD; TGS; anticodon-binding; SPTR: threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase, class IIa; PFAM: anticodon binding domain; threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_004267954.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); HAMAP: Trigger factor; InterPro IPR008881: IPR008880: IPR005215; KEGG: plm:Plim_3336 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor YP_004267955.1 InterPro IPR001478; KEGG: pca:Pcar_2354 cell division membrane protein; SMART: PDZ/DHR/GLGF; SPTR: uncharacterized protein YP_004267956.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011932: IPR004107: IPR002104; KEGG: plm:Plim_1185 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase XerD; TIGRFAM: Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD YP_004267957.1 COGs: COG0372 citrate synthase; InterPro IPR011278: IPR002020; KEGG: plm:Plim_0895 2-methylcitrate synthase/citrate synthase II; PFAM: citrate synthase-like; PRIAM: citrate (Si)-synthase; SPTR: citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; PFAM: citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II YP_004267958.1 KEGG: plm:Plim_3310 hypothetical protein; SPTR: uncharacterized protein YP_004267959.1 COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: plm:Plim_1030 protein of unknown function DUF55; PFAM: Uncharacterised protein family UPF0310; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF55 YP_004267960.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402: IPR006439: IPR005834; KEGG: plm:Plim_2884 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: haloacid dehalogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004267961.1 COGs: COG0686 alanine dehydrogenase; InterPro IPR008141: IPR007886: IPR007698; KEGG: plm:Plim_3804 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT, C-terminal; alanine dehydrogenase/PNT, N-terminal; PRIAM: alanine dehydrogenase; SPTR: alanine dehydrogenase; TIGRFAM: alanine dehydrogenase/pyridine nucleotide transhydrogenase; PFAM: alanine dehydrogenase/PNT, C-terminal domain; alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase YP_004267962.1 KEGG: oaa:100080799 similar to fat protein; SPTR: Predicted protein YP_004267963.1 COGs: COG2262 GTPase; InterPro IPR016496: IPR002917; KEGG: plm:Plim_1713 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein Hflx; TIGRFAM: GTP-binding protein, HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX YP_004267964.1 COGs: COG0155 Sulfite reductase subunit beta (hemoprotein); InterPro IPR005117: IPR006067; KEGG: plm:Plim_2758 sulfite reductase (NADPH); PFAM: nitrite/sulphite reductase 4Fe-4S domain; nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; PRIAM: Sulfite reductase (ferredoxin); SPTR: Sulfite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S domain; nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: ferredoxin-sulfite reductase YP_004267965.1 InterPro IPR002645; KEGG: plm:Plim_2399 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004267966.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: plm:Plim_2329 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004267967.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR013656: IPR003661: IPR003594: IPR 001789: IPR008207; KEGG: plm:Plim_2762 PAS sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box YP_004267968.1 InterPro IPR013427; KEGG: psl:Psta_3677 heme-binding protein; SPTR: uncharacterized protein; TIGRFAM: Haem-binding domain, PFAM: cytochrome C; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type YP_004267969.1 COGs: COG0044 dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722: IPR006680; KEGG: plm:Plim_0292 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: dihydroorotase; TIGRFAM: dihydroorotase multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_004267970.1 InterPro IPR000914; KEGG: plm:Plim_1700 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004267971.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109; KEGG: ote:Oter_1524 TGF-beta receptor type I/II extracellular region; PFAM: oligopeptide transporter; SPTR: Amino acid/peptide transporter; PFAM: POT family YP_004267972.1 KEGG: psl:Psta_3013 hypothetical protein; SPTR: uncharacterized protein YP_004267973.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004267974.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR011418; KEGG: plm:Plim_3264 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: uncharacterized protein; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel YP_004267975.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterPro IPR001440: IPR011260: IPR019734; KEGG: plm:Plim_0602 RNA polymerase subunit alpha domain protein; PFAM: RNA polymerase, subunit alpha, C-terminal; Tetratricopeptide TPR-1; SPTR: RNA polymerase subunit alpha domain protein; PFAM: Bacterial RNA polymerase, alpha chain C terminal domain YP_004267976.1 COGs: COG0238 ribosomal protein S18; HAMAP: ribosomal protein S18; InterPro IPR001648; KEGG: plm:Plim_0863 ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004267977.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: plm:Plim_0044 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase YP_004267978.1 COGs: COG5379 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; KEGG: plm:Plim_0043 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3419) YP_004267979.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: plm:Plim_4002 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004267980.1 COGs: COG1819 glycosyl transferase related to UDP-glucuronosyltransferase; KEGG: psl:Psta_4683 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein YP_004267981.1 COGs: COG1403 Restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: psl:Psta_3995 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease domain protein; PFAM: HNH endonuclease YP_004267982.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR006286: IPR002818; KEGG: rmr:Rmar_0332 intracellular protease PfpI family; PFAM: ThiJ/PfpI; SPTR: Intracellular protease PfpI family; TIGRFAM: peptidase C56, PfpI; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease PfpI family YP_004267983.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: psl:Psta_3599 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004267984.1 COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: plm:Plim_3978 protein of unknown function DUF374; PFAM: protein of unknown function DUF374; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF374) YP_004267985.1 COGs: COG4401 chorismate mutase; InterPro IPR008243; KEGG: plm:Plim_2024 chorismate mutase; PFAM: chorismate mutase, AroH class; SPTR: chorismate mutase; TIGRFAM: chorismate mutase, AroH class; PFAM: chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1 YP_004267986.1 COGs: COG3961 pyruvate decarboxylase; InterPro IPR012001: IPR012000: IPR011766; KEGG: plm:Plim_0887 thiamine pyrophosphate protein TPP binding domain protein; PFAM: thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: pyruvate decarboxylase; SPTR: indole-3-pyruvate decarboxylase; PFAM: thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, N-terminal TPP binding domain; thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004267987.1 COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR006076; KEGG: bac:BamMC406_3505 alpha/beta hydrolase domain-containing protein; PFAM: FAD dependent oxidoreductase; PRIAM: 4-hydroxyacetophenone monooxygenase; SPTR: alpha/beta hydrolase fold-3 domain protein; PFAM: Flavin-binding monooxygenase-like YP_004267988.1 KEGG: azl:AZL_a02390 methyl-galactoside transporter permease; SPTR: Probable cytochrome C oxidase subunit 1-beta YP_004267989.1 KEGG: cai:Caci_7131 secreted protein; SPTR: Secreted protein YP_004267990.1 COGs: COG1064 Zn-dependent alcohol dehydrogenase; InterPro IPR013154: IPR013149; KEGG: bgl:bglu_2g14520 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; SPTR: alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004267991.1 KEGG: psl:Psta_1289 hypothetical protein; SPTR: uncharacterized protein; PFAM: KOW motif YP_004267992.1 COGs: COG4422 bacteriophage protein gp37; InterPro IPR011101; KEGG: psl:Psta_1290 Gp37Gp68 family protein; PFAM: Phage Gp37Gp68; SPTR: Gp37Gp68 family protein; PFAM: Phage protein Gp37/Gp68 YP_004267993.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004267994.1 InterPro IPR005135; KEGG: amu:Amuc_1226 hypothetical protein; PFAM: endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: endonuclease/exonuclease/phosphatase family YP_004267995.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: psl:Psta_4264 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1; PRIAM: Haloalkane dehalogenase; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold YP_004267996.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: plm:Plim_1470 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004267997.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: plm:Plim_1634 peptidase M24; PFAM: peptidase M24, structural domain; SPTR: peptidase M24; PFAM: metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004267998.1 COGs: COG0492 thioredoxin reductase; InterPro IPR005982: IPR013027; KEGG: plm:Plim_1633 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: thioredoxin-disulfide reductase; SPTR: thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004267999.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268000.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308: IPR015803; KEGG: sru:SRU_1014 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004268001.1 InterPro IPR012902; KEGG: plm:Plim_4221 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268002.1 InterPro IPR012902; KEGG: plm:Plim_3492 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268003.1 KEGG: plm:Plim_2454 hypothetical protein; SPTR: Tetratricopeptide repeat protein YP_004268004.1 InterPro IPR003675; KEGG: noc:Noc_1193 abortive infection protein; PFAM: hypothetical protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family YP_004268005.1 InterPro IPR011444; KEGG: rba:RB7762 xanthan lyase; PFAM: protein of unknown function DUF1549; SPTR: Probable xanthan lyase; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004268006.1 InterPro IPR010869; KEGG: plm:Plim_3817 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004268007.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR001789; KEGG: dac:Daci_4352 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: PAS sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004268008.1 KEGG: ssm:Spirs_0871 hypothetical protein; SPTR: NADH-ubiquinone oxidoreductase chain 4 YP_004268009.1 KEGG: bmn:BMA10247_3070 prophage DLP12 integrase; SPTR: PotC YP_004268010.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR003751: IPR001789; KEGG: rba:RB8820 sensory transduction histidine kinase; PFAM: carbon storage regulator; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Probable sensory transduction histidine kinase; PFAM: Global regulator protein family; Response regulator receiver domain; TIGRFAM: carbon storage regulator (csrA) YP_004268011.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: plm:Plim_1686 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004268012.1 COGs: COG0465 ATP-dependent Zn protease; InterPro IPR005936: IPR003959: IPR000642: IPR003593; KEGG: plm:Plim_1623 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; peptidase M41; PRIAM: microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: cell division protein FtsH; TIGRFAM: peptidase M41, FtsH; PFAM: FtsH extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004268013.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_1622 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004268014.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: rmr:Rmar_2474 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; SPTR: Probable molybdopterin-guanine dinucleotide biosynthesis protein A YP_004268015.1 InterPro IPR000086; KEGG: psl:Psta_2454 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: Mutator MutT protein; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_004268016.1 COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR001537; KEGG: plm:Plim_1472 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: SpoU rRNA methylase family protein; PFAM: SpoU rRNA methylase family; TIGRFAM: rRNA methylase, , group 2 YP_004268017.1 InterPro IPR019734; KEGG: pcu:pc0316 hypothetical protein; SPTR: uncharacterized protein YP_004268018.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583: IPR001962; KEGG: noc:Noc_1975 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; glutamine amidotransferase, class-II; SPTR: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004268019.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: plm:Plim_3494 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Probable molybdopterin-synthase sulfurylase; PFAM: Rhodanese-like domain YP_004268020.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sti:Sthe_3470 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004268021.1 COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR004785: IPR003500; KEGG: rba:RB5998 ribose-5-phosphate isomerase B; PFAM: ribose/galactose isomerase; PRIAM: ribose-5-phosphate isomerase; SPTR: ribose 5-phosphate epimerase (Pentose phosphate); TIGRFAM: ribose/galactose isomerase; ribose 5-phosphate isomerase B; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004268022.1 KEGG: mpd:MCP_0331 hypothetical protein; SPTR: uncharacterized protein YP_004268023.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: amr:AM1_3131 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004268024.1 KEGG: psl:Psta_1458 hypothetical protein; SPTR: uncharacterized protein YP_004268025.1 KEGG: sde:Sde_2439 hypothetical protein; SPTR: uncharacterized protein YP_004268026.1 KEGG: psl:Psta_1382 hypothetical protein; SPTR: uncharacterized protein YP_004268027.1 InterPro IPR000835; KEGG: psl:Psta_1502 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR family transcriptional regulator protein; PFAM: MarR family YP_004268028.1 InterPro IPR002781; KEGG: hch:HCH_03632 permease; PFAM: protein of unknown function DUF81; SPTR: Predicted Permease; PFAM: Sulfite exporter TauE/SafE YP_004268029.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: psl:Psta_1224 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Probable divalent cation resistant determinant protein C; PFAM: Outer membrane efflux protein YP_004268030.1 InterPro IPR003715; KEGG: plm:Plim_2837 polysaccharide export protein; PFAM: polysaccharide export protein; SPTR: polysaccharide export protein; PFAM: polysaccharide biosynthesis/export protein YP_004268031.1 KEGG: plm:Plim_2836 hypothetical protein; SPTR: uncharacterized protein YP_004268032.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR000305: IPR001943: IPR001162; KEGG: plm:Plim_4113 excinuclease ABC C subunit domain protein; PFAM: excinuclease ABC, C subunit, C-terminal; excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; SMART: excinuclease ABC, C subunit, N-terminal; SPTR: excinuclease ABC subunit C; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004268033.1 KEGG: mbr:MONBRDRAFT_31655 hypothetical protein; SPTR: Predicted protein YP_004268034.1 KEGG: min:Minf_1824 hypothetical protein; SPTR: uncharacterized protein YP_004268035.1 KEGG: ckp:ckrop_1061 RNA polymerase sigma factor; SPTR: uncharacterized protein YP_004268036.1 KEGG: plm:Plim_4019 hypothetical protein; SPTR: uncharacterized protein YP_004268037.1 COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: plm:Plim_2320 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_004268038.1 KEGG: psl:Psta_2460 hypothetical protein; SPTR: uncharacterized protein YP_004268039.1 InterPro IPR019759; KEGG: plm:Plim_0434 peptidase S24 and S26 domain protein; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: peptidase S24 and S26 domain protein; PFAM: peptidase S24-like YP_004268040.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR006674; KEGG: spu:579637 hypothetical LOC579637; PFAM: metal-dependent phosphohydrolase, HD subdomain; SPTR: Novel HD domain containing protein; PFAM: HD domain YP_004268041.1 InterPro IPR012495; KEGG: psl:Psta_4516 TadE family protein; PFAM: TadE-like; SPTR: TadE family protein; PFAM: TadE-like protein YP_004268042.1 InterPro IPR018705: IPR002035; KEGG: psl:Psta_4515 von Willebrand factor A; PFAM: von Willebrand factor, type A; protein of unknown function DUF2134, membrane; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor A; PFAM: von Willebrand factor A domain YP_004268043.1 InterPro IPR012495; KEGG: plm:Plim_4120 TadE family protein; PFAM: TadE-like; SPTR: TadE family protein; manually curated; PFAM: TadE-like protein YP_004268044.1 KEGG: swi:Swit_2713 hypothetical protein; SPTR: uncharacterized protein YP_004268045.1 KEGG: ava:Ava_2499 WD-40 repeat-containing protein; SPTR: WD-40 repeat YP_004268046.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: ote:Oter_0338 oxidoreductase domain-containing protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; PRIAM: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: NAD binding oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_004268047.1 KEGG: plm:Plim_2773 hypothetical protein; SPTR: uncharacterized protein YP_004268048.1 InterPro IPR011444; KEGG: plm:Plim_2794 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004268049.1 COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: hoh:Hoch_3635 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein; PFAM: DoxX YP_004268050.1 InterPro IPR013740: IPR001258; KEGG: plm:Plim_4099 hypothetical protein; PFAM: Redoxin; NHL repeat; SPTR: uncharacterized protein; PFAM: NHL repeat; AhpC/TSA family YP_004268051.1 InterPro IPR002218; KEGG: rba:RB7773 NADH-dependant oxidoreductase; PFAM: glucose-inhibited division protein A-related; SPTR: uncharacterized protein; PFAM: glucose inhibited division protein A YP_004268052.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634: IPR004635: IPR002142; KEGG: plm:Plim_1402 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: Periplasmic serine protease; TIGRFAM: peptidase S49, SppA; peptidase S49, protease IV; PFAM: peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type YP_004268053.1 COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010074: IPR000728: IPR010918; KEGG: plm:Plim_1829 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_004268054.1 InterPro IPR008915; KEGG: plm:Plim_2044 peptidase M50; PFAM: peptidase M50; SPTR: uncharacterized protein; PFAM: peptidase family M50 YP_004268055.1 KEGG: cci:CC1G_14998 hypothetical protein; SPTR: UmuD protein YP_004268056.1 KEGG: cyh:Cyan8802_3783 protein of unknown function DUF497; SPTR: uncharacterized protein YP_004268057.1 InterPro IPR013740; KEGG: plm:Plim_3943 redoxin domain protein; PFAM: Redoxin; SPTR: redoxin; PFAM: Redoxin YP_004268058.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: plm:Plim_3689 oligopeptidase A; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: oligopeptidase A; SPTR: oligopeptidase A; PFAM: peptidase family M3 YP_004268059.1 COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: pat:Patl_1742 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein orf7; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453 YP_004268060.1 KEGG: plm:Plim_0851 hypothetical protein; SPTR: uncharacterized protein YP_004268061.1 KEGG: plm:Plim_1305 hypothetical protein; SPTR: uncharacterized protein YP_004268062.1 KEGG: plm:Plim_1304 hypothetical protein; SPTR: uncharacterized protein YP_004268063.1 KEGG: sbl:Sbal_2656 chromosome segregation protein SMC; SPTR: chromosome segregation protein SMC YP_004268064.1 KEGG: pjd:Pjdr2_6167 hypothetical protein; SPTR: uncharacterized protein YP_004268065.1 KEGG: pcr:Pcryo_1143 guanine deaminase; SPTR: thioesterase family protein YP_004268066.1 KEGG: rba:RB13029 hypothetical protein; SPTR: uncharacterized protein YP_004268067.1 InterPro IPR012902; KEGG: plm:Plim_2459 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268068.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: plm:Plim_0568 protein of unknown function DUF1592; PFAM: protein of unknown function DUF1592; protein of unknown function DUF1587; protein of unknown function DUF1595; hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); protein of unknown function (DUF1595); Planctomycete cytochrome C; protein of unknown function (DUF1585) YP_004268069.1 InterPro IPR011447; KEGG: plm:Plim_0569 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004268070.1 KEGG: plm:Plim_0570 hypothetical protein; SPTR: uncharacterized protein YP_004268071.1 COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: mxa:MXAN_3892 maltose O-acetyltransferase; PRIAM: maltose O-acetyltransferase; SPTR: maltose O-acetyltransferase; PFAM: maltose acetyltransferase; Bacterial transferase hexapeptide (three repeats) YP_004268072.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: swd:Swoo_3657 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004268073.1 KEGG: plm:Plim_2790 hypothetical protein; SPTR: uncharacterized protein YP_004268074.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268075.1 KEGG: sus:acid_5706 hypothetical protein; SPTR: uncharacterized protein YP_004268076.1 COGs: COG1891 conserved hypothetical protein; InterPro IPR007565; KEGG: psl:Psta_3306 hypothetical protein; PFAM: protein of unknown function DUF556; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF556) YP_004268077.1 COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR005225: IPR006298: IPR000795: IPR004161: IPR 000640; KEGG: plm:Plim_1239 GTP-binding protein TypA; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; SPTR: uncharacterized protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; translation elongation factor TU YP_004268078.1 COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258: IPR013027: IPR004099; KEGG: tra:Trad_0899 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: dihydrolipoyl dehydrogenase; SPTR: dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004268079.1 COGs: COG0508 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006255: IPR000089: IPR004167: IPR001078; KEGG: hoh:Hoch_4995 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: dihydrolipoyllysine-residue succinyltransferase; SPTR: dihydrolipoamide succinyltransferase; TIGRFAM: dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) YP_004268080.1 KEGG: psl:Psta_4359 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sulfotransferase domain YP_004268081.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_2328 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004268082.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: fjo:Fjoh_0936 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase family protein; PFAM: enoyl-CoA hydratase/isomerase family YP_004268083.1 InterPro IPR000182; KEGG: gau:GAU_1075 diamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: diamine N-acetyltransferase; SPTR: diamine acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004268084.1 KEGG: plm:Plim_2344 hypothetical protein; SPTR: uncharacterized protein YP_004268085.1 KEGG: psl:Psta_4725 hypothetical protein; SPTR: uncharacterized protein YP_004268086.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011931: IPR004107: IPR002104; KEGG: plm:Plim_2346 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase/recombinase; TIGRFAM: Tyrosine recombinase XerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerC YP_004268087.1 KEGG: mxa:MXAN_6478 hypothetical protein; SPTR: uncharacterized protein YP_004268088.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703: IPR003593; KEGG: mxa:MXAN_6477 ATPase AAA; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family; PFAM: ATPase family associated with various cellular activities (AAA) YP_004268089.1 KEGG: psl:Psta_1319 hypothetical protein; SPTR: uncharacterized protein YP_004268090.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: psl:Psta_1320 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transporter; PFAM: ABC transporter YP_004268091.1 KEGG: psl:Psta_1321 hypothetical protein; SPTR: uncharacterized protein YP_004268092.1 COGs: COG1411 Uncharacterized protein related to proFAR isomerase (HisA); InterPro IPR006062; KEGG: mvu:Metvu_1539 HisA/HisF family protein; PFAM: histidine biosynthesis; SPTR: HisA/HisF family protein, ; PFAM: histidine biosynthesis protein; TIGRFAM: hisA/hisF family protein YP_004268093.1 COGs: COG0349 ribonuclease D; InterPro IPR002562: IPR002121; KEGG: plm:Plim_0672 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; PRIAM: ribonuclease D; SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; SPTR: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain; TIGRFAM: ribonuclease D YP_004268094.1 COGs: COG0018 arginyl-tRNA synthetase; HAMAP: arginyl-tRNA synthetase, class Ic; InterPro IPR001278: IPR005148: IPR015945: IPR008909; KEGG: plm:Plim_1338 arginyl-tRNA synthetase; PFAM: arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase, class Ic, N-terminal; DALR anticodon binding; PRIAM: arginine--tRNA ligase; SPTR: arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004268095.1 KEGG: plm:Plim_2329 response regulator receiver; SPTR: Response regulator receiver YP_004268096.1 COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: sli:Slin_1106 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase family YP_004268097.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: psl:Psta_2473 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004268098.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: rba:RB5749 hypothetical protein; PFAM: Iojap-related protein; SPTR: uncharacterized protein; TIGRFAM: Iojap-related protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_004268099.1 COGs: COG1505 serine protease of the peptidase family S9A; InterPro IPR004106; KEGG: cyc:PCC7424_0746 prolyl oligopeptidase; PFAM: peptidase S9A, oligopeptidase, N-terminal beta-propeller; PRIAM: prolyl oligopeptidase; SPTR: prolyl endopeptidase; PFAM: prolyl oligopeptidase, N-terminal beta-propeller domain; prolyl oligopeptidase family YP_004268100.1 COGs: COG0811 biopolymertransporter; InterPro IPR002898; KEGG: plm:Plim_1696 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable TolQ; PFAM: MotA/TolQ/ExbB proton channel family YP_004268101.1 KEGG: plm:Plim_3809 hypothetical protein; SPTR: uncharacterized protein YP_004268102.1 KEGG: plm:Plim_3808 hypothetical protein; SPTR: uncharacterized protein YP_004268103.1 COGs: COG0811 biopolymertransporter; InterPro IPR002898; KEGG: plm:Plim_3807 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable tolQ protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004268104.1 InterPro IPR003400; KEGG: plm:Plim_3806 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1 YP_004268105.1 InterPro IPR003400; KEGG: plm:Plim_3805 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: biopolymertransporter ExbD/TolR; PFAM: Biopolymer transporter ExbD/TolR YP_004268106.1 COGs: COG0512 anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221: IPR000991; KEGG: plm:Plim_0052 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I, C-terminal; PRIAM: anthranilate synthase; SPTR: Para-aminobenzoate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004268107.1 COGs: COG1129 ABC-type sugar transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: rba:RB10181 ribose transport ATP-binding protein RbsA; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ribose transport ATP-binding protein rbsA; PFAM: ABC transporter YP_004268108.1 InterPro IPR004360; KEGG: dal:Dalk_4724 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004268109.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: plm:Plim_2753 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004268110.1 COGs: COG0469 pyruvate kinase; InterPro IPR001697: IPR015793: IPR015794; KEGG: plm:Plim_3274 pyruvate kinase; PFAM: pyruvate kinase, barrel; pyruvate kinase, alpha/beta; PRIAM: pyruvate kinase; SPTR: pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase, barrel domain; pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_004268111.1 InterPro IPR002494; KEGG: rno:100362031 hypothetical protein LOC100362031; PFAM: Keratin, high sulphur B2 protein; SPTR: Novel member of the keratin associated protein 4 (Krtap4) family YP_004268112.1 COGs: COG0861 membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: bbr:BB4257 hypothetical protein; PFAM: integral membrane protein TerC; SPTR: membrane protein; PFAM: integral membrane protein TerC family YP_004268113.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: plm:Plim_0065 peptidase M24; PFAM: peptidase M24, structural domain; Creatinase; SPTR: peptidase; PFAM: metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004268114.1 COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249: IPR000089; KEGG: plm:Plim_0064 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA biotin carboxyl carrier; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004268115.1 COGs: COG4770 acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR004549: IPR005481: IPR005479: IPR005482; KEGG: plm:Plim_0063 acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl phosphate synthetase, large subunit, ATP-binding; carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: pyruvate carboxylase; SPTR: Biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit YP_004268116.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR000023; KEGG: plm:Plim_0062 6-phosphofructokinase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: phosphofructokinase; TIGRFAM: phosphofructokinase YP_004268117.1 KEGG: plm:Plim_3958 hypothetical protein; SPTR: uncharacterized protein YP_004268118.1 COGs: COG0703 shikimate kinase; HAMAP: shikimate kinase; InterPro IPR000623; KEGG: glo:Glov_3097 shikimate kinase; PFAM: shikimate kinase; PRIAM: shikimate kinase; SPTR: shikimate kinase; PFAM: shikimate kinase YP_004268119.1 COGs: COG1960 acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: app:CAP2UW1_1716 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Isovaleryl-CoA dehydrogenase; SPTR: acyl-coa dehydrogenase; PFAM: acyl-CoA dehydrogenase, C-terminal domain; acyl-CoA dehydrogenase, middle domain; acyl-CoA dehydrogenase, N-terminal domain YP_004268120.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005671: IPR000891: IPR013709; KEGG: plm:Plim_0093 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SPTR: 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_004268122.1 KEGG: dat:HRM2_38900 transcriptional regulator (PadR family protein); SPTR: transcriptional regulator (PadR family protein); PFAM: transcriptional regulator PadR-like family YP_004268123.1 KEGG: plm:Plim_1637 hypothetical protein; SPTR: uncharacterized protein YP_004268124.1 KEGG: hau:Haur_3093 response regulator receiver protein; SPTR: Response regulator receiver protein YP_004268125.1 COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: plm:Plim_0721 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; PRIAM: ornithine cyclodeaminase; SPTR: ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin family YP_004268126.1 COGs: COG3386 gluconolactonase; InterPro IPR013658; KEGG: psl:Psta_1774 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/gluconolaconase/LRE-like region; SPTR: SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/gluconolaconase/LRE-like region YP_004268127.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: rba:RB6145 hypothetical protein; PFAM: esterase; SPTR: esterase; PFAM: esterase YP_004268128.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: plm:Plim_3315 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_004268129.1 COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR001509; KEGG: sus:acid_1019 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_004268130.1 COGs: COG0422 thiamine biosynthesis protein ThiC; HAMAP: thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: plm:Plim_1742 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: phosphomethylpyrimidine synthase; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004268131.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR002218; KEGG: psl:Psta_2115 tryptophan halogenase; PFAM: glucose-inhibited division protein A-related; SPTR: Probable alkylhalidase; PFAM: tryptophan halogenase YP_004268132.1 KEGG: lbc:LACBIDRAFT_293033 hypothetical protein; SPTR: Predicted protein YP_004268133.1 COGs: COG1160 GTPase; InterPro IPR005225: IPR016484: IPR002917; KEGG: plm:Plim_2246 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_004268134.1 COGs: COG1932 phosphoserine aminotransferase; HAMAP: phosphoserine aminotransferase; InterPro IPR003248: IPR000192; KEGG: plm:Plim_1744 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: phosphoserine transaminase; SPTR: phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase YP_004268135.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dgr:Dgri_GH21813 GH21813 gene product from transcript GH21813-RA; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004268136.1 COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR006076: IPR002937; KEGG: rba:RB9278 deoxyribodipyrimidine photolyase; PFAM: FAD dependent oxidoreductase; Amine oxidase; SPTR: Amine oxidase flavin-containing; PFAM: Flavin containing amine oxidoreductase YP_004268137.1 InterPro IPR005632; KEGG: plm:Plim_1209 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like) YP_004268138.1 KEGG: rba:RB7824 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: protein of unknown function (DUF2752) YP_004268139.1 KEGG: plm:Plim_1136 hypothetical protein; SPTR: uncharacterized protein YP_004268140.1 KEGG: plm:Plim_1135 hypothetical protein; SPTR: uncharacterized protein YP_004268141.1 InterPro IPR005821; KEGG: pca:Pcar_0515 ion transport protein; PFAM: ion transport; SPTR: ion transporter; PFAM: ion transport protein YP_004268142.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components; KEGG: plm:Plim_2868 NMT1/THI5 like domain protein; SPTR: NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like YP_004268143.1 KEGG: plm:Plim_1539 hypothetical protein; SPTR: uncharacterized protein YP_004268144.1 InterPro IPR000182; KEGG: rba:RB2928 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: acetyltransferase (GNAT) family YP_004268145.1 KEGG: plm:Plim_4224 sulfate transporter/antisigma-factor antagonist STAS; SPTR: uncharacterized protein; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004268146.1 KEGG: plm:Plim_4007 hypothetical protein; SPTR: Probable alcohol dehydrogenase (Acceptor) YP_004268147.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase afsK; PFAM: PQQ enzyme repeat YP_004268148.1 KEGG: psl:Psta_4172 hypothetical protein; SPTR: uncharacterized protein YP_004268149.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: plm:Plim_2874 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004268150.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: plm:Plim_2875 CheC domain protein; SPTR: uncharacterized protein YP_004268151.1 COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: plm:Plim_0563 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SPTR: uncharacterized protein; PFAM: HD domain YP_004268152.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402: IPR006439: IPR005834; KEGG: ttr:Tter_0876 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004268153.1 COGs: COG0297 glycogen synthase; HAMAP: glycogen/starch synthases, ADP-glucose type; InterPro IPR011835: IPR013534: IPR001296; KEGG: plm:Plim_1134 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: glycogen synthase; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_004268154.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR000330: IPR001650: IPR014001; KEGG: plm:Plim_0368 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Swi/snf family helicase_2; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004268155.1 KEGG: plm:Plim_0367 hypothetical protein; SPTR: uncharacterized protein YP_004268156.1 COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: plm:Plim_1303 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate--CoA ligase; PFAM: AMP-binding enzyme YP_004268157.1 KEGG: plm:Plim_3528 hypothetical protein; SPTR: uncharacterized protein YP_004268158.1 COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: plm:Plim_1521 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase YP_004268159.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: rba:RB12526 hypothetical protein; PFAM: peptidase S54, rhomboid; SPTR: Probable membrane protein; PFAM: Rhomboid family YP_004268160.1 COGs: COG0254 ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: cpu:cpfrc_00658 50S ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004268161.1 COGs: COG0216 protein chain release factor A; HAMAP: peptide chain release factor 1; InterPro IPR004373: IPR005139: IPR000352; KEGG: plm:Plim_0922 peptide chain release factor 1; PFAM: class I peptide chain release factor; peptide chain release factor; SPTR: peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004268162.1 COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR004556: IPR019874: IPR007848; KEGG: plm:Plim_3974 modification methylase, HemK family; PFAM: methyltransferase small; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Modification methylase, HemK family; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_004268163.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750: IPR001986; KEGG: plm:Plim_1195 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004268164.1 COGs: COG0173 aspartyl-tRNA synthetase; InterPro IPR004524: IPR004365: IPR004364: IPR004115; KEGG: plm:Plim_3302 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: aspartate--tRNA ligase; SPTR: aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004268165.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: plm:Plim_1499 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004268166.1 COGs: COG0280 phosphotransacetylase; InterPro IPR002505; KEGG: plm:Plim_1498 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: phosphate butyryltransferase; SPTR: phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase YP_004268167.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: alv:Alvin_0086 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: histidine triad (HIT) protein; PFAM: HIT domain YP_004268168.1 KEGG: sde:Sde_0567 glucan 1,4-alpha-glucosidase; SPTR: thiol-disulfide interchange protein-like protein YP_004268169.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004268170.1 KEGG: pan:PODANSg4484 hypothetical protein; SPTR: Predicted CDS Pa_1_19860 YP_004268171.1 InterPro IPR008915; KEGG: plm:Plim_1523 peptidase M50; PFAM: peptidase M50; SPTR: uncharacterized protein; PFAM: peptidase family M50 YP_004268172.1 COGs: COG0294 dihydropteroate synthase; InterPro IPR006390: IPR000489; KEGG: plm:Plim_1925 dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; PRIAM: dihydropteroate synthase; SPTR: uncharacterized protein; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004268173.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: plm:Plim_0551 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004268174.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR006311: IPR010869; KEGG: plm:Plim_3720 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004268175.1 InterPro IPR011444; KEGG: plm:Plim_3719 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: Probable vegetatible incompatibility protein HET-E-1; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004268176.1 COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_1070 gluconate transporter; PFAM: gluconate transporter; SPTR: gluconate permease gntP; PFAM: GntP family permease YP_004268177.1 COGs: COG1109 phosphomannomutase; InterPro IPR005844: IPR005845: IPR005846; KEGG: psl:Psta_0105 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, alpha/beta/alpha domain III; SPTR: phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004268179.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: srm:SRM_02073 chitooligosaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: polysaccharide deacetylase; PFAM: polysaccharide deacetylase YP_004268180.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: plm:Plim_1343 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004268181.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: plm:Plim_3791 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase family protein; PFAM: NAD dependent epimerase/dehydratase family YP_004268182.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pca:Pcar_1467 nucleoside-diphosphate-sugar epimerases; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 5'-epimerase; SPTR: Capsular polysaccharide biosynthesis protein I; PFAM: NAD dependent epimerase/dehydratase family YP_004268183.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: dia:Dtpsy_0555 glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; PRIAM: glucose-1-phosphate thymidylyltransferase; SPTR: glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, long form; PFAM: nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004268184.1 COGs: COG0657 esterase/lipase; KEGG: rba:RB2265 lipase/esterase; SPTR: Probable lipase/esterase; PFAM: Eukaryotic protein of unknown function (DUF829); alpha/beta hydrolase fold YP_004268185.1 COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006236: IPR006139: IPR006140: IPR002912; KEGG: plm:Plim_2827 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT; PRIAM: phosphoglycerate dehydrogenase; SPTR: phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_004268186.1 KEGG: plm:Plim_0531 hypothetical protein; SPTR: uncharacterized protein YP_004268187.1 InterPro IPR007055; KEGG: plm:Plim_3429 transporter; PFAM: transport-associated; SPTR: uncharacterized protein; PFAM: phospholipid-binding domain YP_004268188.1 KEGG: plm:Plim_3431 hypothetical protein; SPTR: uncharacterized protein YP_004268189.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: nucleoside-triphosphatase; InterPro IPR002637: IPR020922; KEGG: psl:Psta_2079 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; PRIAM: nucleoside-triphosphatase; SPTR: nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004268190.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000253: IPR003018: IPR010822: IPR001932; KEGG: plm:Plim_3218 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; Forkhead-associated; GAF; SMART: protein phosphatase 2C-related; Forkhead-associated; GAF; SPTR: uncharacterized protein; PFAM: GAF domain; stage II sporulation protein E (SpoIIE); FHA domain YP_004268191.1 KEGG: cca:CCA00013 hypothetical protein; SPTR: uncharacterized protein YP_004268192.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004268193.1 InterPro IPR012902; KEGG: plm:Plim_1892 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268194.1 InterPro IPR012902; KEGG: plm:Plim_1892 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268195.1 KEGG: psl:Psta_1458 hypothetical protein; SPTR: uncharacterized protein YP_004268196.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268197.1 KEGG: psl:Psta_4523 hypothetical protein; SPTR: uncharacterized protein YP_004268198.1 KEGG: psl:Psta_1869 hypothetical protein; SPTR: uncharacterized protein YP_004268199.1 KEGG: ctt:CtCNB1_2569 hypothetical protein; SPTR: uncharacterized protein YP_004268200.1 KEGG: psl:Psta_0935 protein of unknown function DUF1568; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004268201.1 COGs: COG0624 acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: plm:Plim_0843 peptidase M20; PFAM: peptidase M20; peptidase M20, dimerisation; PRIAM: beta-Ala-His dipeptidase; SPTR: ArgE/DapE/Acy1 family protein; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain YP_004268202.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR003675; KEGG: psl:Psta_1550 abortive infection protein; PFAM: hypothetical protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family YP_004268203.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: psl:Psta_1551 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Sodium ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004268204.1 KEGG: rba:RB4015 signal peptide; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004268205.1 KEGG: plm:Plim_3835 hypothetical protein; SPTR: uncharacterized protein YP_004268206.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR003148: IPR006037; KEGG: rmr:Rmar_0139 TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain YP_004268207.1 COGs: COG0168 Trk-type K+ transporters membrane components; InterPro IPR003445; KEGG: rmr:Rmar_0138 potassium uptake protein, TrkH family; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004268208.1 KEGG: tgu:100224227 transmembrane protein 16C; SPTR: Conserved hypothetical nucleotide-binding protein YP_004268209.1 COGs: COG0217 conserved hypothetical protein; HAMAP: protein of unknown function DUF28; InterPro IPR002876; KEGG: psl:Psta_1451 protein of unknown function DUF28; PFAM: protein of unknown function DUF28; SPTR: UPF0082 protein DSM3645_29122; TIGRFAM: protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004268210.1 InterPro IPR019883: IPR004360; KEGG: rba:RB3840 dioxygenase superfamily protein; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Similar to dioxygenase superfamily; TIGRFAM: Lactoylglutathione lyase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase family protein YP_004268211.1 KEGG: rba:RB7871 signal peptide; SPTR: uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase YP_004268212.1 KEGG: amr:AM1_1975 hypothetical protein; SPTR: uncharacterized protein YP_004268213.1 KEGG: gbm:Gbem_3668 HicB family protein; SPTR: HicB family protein YP_004268214.1 KEGG: dde:Dde_0780 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: Domain of unknown function (DUF1837) YP_004268215.1 COGs: COG1204 Superfamily II helicase; InterPro IPR001650; KEGG: dde:Dde_0781 helicase-like; PFAM: DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; SPTR: Helicase-like; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004268216.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR006005: IPR013027; KEGG: plm:Plim_2693 glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: glutamate synthase (NADH); SPTR: NADH-glutamate synthase small chain; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit 1; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit YP_004268217.1 COGs: COG0069 glutamate synthase domain 2; InterPro IPR000583: IPR006982: IPR002932: IPR002489; KEGG: plm:Plim_2694 glutamate synthase (NADH); PFAM: glutamate synthase, central-C; glutamine amidotransferase, class-II; glutamate synthase, central-N; glutamate synthase, subunit alpha, C-terminal; PRIAM: glutamate synthase (NADH); SPTR: glutamate synthase (NADH); PFAM: Conserved region in glutamate synthase; GXGXG motif; glutamate synthase central domain; glutamine amidotransferases class-II YP_004268218.1 COGs: COG0583 transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: plm:Plim_2695 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004268219.1 KEGG: bfo:BRAFLDRAFT_63902 hypothetical protein; SPTR: uncharacterized protein YP_004268220.1 COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: plm:Plim_2244 phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Probable phytoene synthase; PFAM: Squalene/phytoene synthase YP_004268221.1 InterPro IPR011521; KEGG: rba:RB850 signal peptide; PFAM: YTV; SPTR: uncharacterized protein; PFAM: YTV YP_004268222.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR003661: IPR003594; KEGG: plm:Plim_1745 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensor protein HYDH; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004268223.1 COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440: IPR019734; KEGG: plm:Plim_0431 tetratricopeptide TPR_4; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004268224.1 HAMAP: ribosomal protein S21; InterPro IPR001911; KEGG: plm:Plim_0852 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_004268225.1 InterPro IPR012902; KEGG: plm:Plim_3401 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268226.1 InterPro IPR007047; KEGG: plm:Plim_0875 Flp/Fap pilin component; PFAM: Flp/Fap pilin component; SPTR: Flp/Fap pilin component; PFAM: Flp/Fap pilin component YP_004268227.1 COGs: COG1225 peroxiredoxin; InterPro IPR000866; KEGG: plm:Plim_4209 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PRIAM: peroxiredoxin; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_004268228.1 COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein; PFAM: Divalent ion tolerance protein, CutA1; SPTR: CutA1 divalent ion tolerance protein; PFAM: CutA1 divalent ion tolerance protein YP_004268229.1 COGs: COG0221 inorganic pyrophosphatase; HAMAP: inorganic pyrophosphatase; InterPro IPR008162; KEGG: plm:Plim_3667 inorganic diphosphatase; PFAM: inorganic pyrophosphatase; PRIAM: inorganic diphosphatase; SPTR: inorganic diphosphatase; PFAM: inorganic pyrophosphatase YP_004268230.1 COGs: COG3239 Fatty acid desaturase; InterPro IPR012899: IPR005804; KEGG: net:Neut_1694 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; Domain of unknown function, Spy-related; SPTR: Fatty acid desaturase; PFAM: Fatty acid desaturase YP_004268231.1 COGs: COG0481 membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterPro IPR005225: IPR006297: IPR000795: IPR004161: IPR 000640: IPR013842; KEGG: plm:Plim_3466 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004268232.1 COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR005760: IPR003265: IPR003651; KEGG: plm:Plim_3349 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase YP_004268233.1 KEGG: psl:Psta_0832 protein of unknown function DUF1570; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004268234.1 KEGG: plm:Plim_0389 hypothetical protein; SPTR: uncharacterized protein YP_004268235.1 KEGG: plm:Plim_0336 hypothetical protein; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein YP_004268236.1 KEGG: plm:Plim_1354 hypothetical protein; SPTR: uncharacterized protein YP_004268237.1 COGs: COG0240 glycerol-3-phosphate dehydrogenase; HAMAP: glycerol-3-phosphate dehydrogenase [NAD(P)+]; InterPro IPR011128: IPR006109; KEGG: plm:Plim_1353 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; SPTR: glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004268238.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: plm:Plim_1588 rhomboid family protein; PFAM: peptidase S54, rhomboid; SPTR: rhomboid family protein; PFAM: Rhomboid family YP_004268239.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR004437: IPR003115; KEGG: plm:Plim_2897 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: Probable chromosome partitioning protein parB; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_004268240.1 KEGG: rba:RB1535 hypothetical protein; SPTR: uncharacterized protein YP_004268241.1 InterPro IPR007842; KEGG: ter:Tery_0868 hypothetical protein; PFAM: HEPN; SPTR: uncharacterized protein; PFAM: HEPN domain YP_004268242.1 KEGG: tpv:TP01_0944 hypothetical protein; SPTR: uncharacterized protein YP_004268243.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: plm:Plim_3964 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004268244.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_3965 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004268245.1 InterPro IPR017504; KEGG: sus:acid_5079 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03067, planctomycetes; TIGRFAM: Planctomycetes uncharacterized domain TIGR03067 YP_004268246.1 COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: bss:BSUW23_10140 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200) YP_004268247.1 KEGG: osa:4329339 hypothetical protein; SPTR: uncharacterized protein YP_004268248.1 KEGG: tag:Tagg_0413 phosphate transporter; SPTR: phosphate transporter YP_004268249.1 KEGG: mva:Mvan_5188 hypothetical protein; SPTR: Hypothetical leucine rich repeat protein YP_004268250.1 InterPro IPR007712; KEGG: sus:acid_6411 plasmid stabilization system protein; PFAM: Plasmid stabilisation system; SPTR: Plasmid stabilization system; manually curated; PFAM: Plasmid stabilisation system protein YP_004268251.1 InterPro IPR013406; KEGG: scl:sce3959 hypothetical protein; PFAM: Addiction module component, CHP02574; SPTR: uncharacterized protein; TIGRFAM: Addiction module component, CHP02574; PFAM: addiction module component; TIGRFAM: addiction module component, TIGR02574 family YP_004268252.1 InterPro IPR002110; KEGG: tpe:Tpen_1284 ankyrin; SPTR: ankyrin; PFAM: ankyrin repeat YP_004268253.1 KEGG: pfo:Pfl01_3787 hypothetical protein; SPTR: SAM-dependent methyltransferase YP_004268254.1 COGs: COG2076 membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: htu:Htur_1574 small multidrug resistance protein; PFAM: Small multidrug resistance protein; SPTR: Small multidrug export protein; PFAM: Small Multidrug Resistance protein YP_004268255.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: hch:HCH_01282 nucleoside-diphosphate-sugar epimerase; SPTR: Predicted nucleoside-diphosphate-sugar epimerase; PFAM: NmrA-like family YP_004268256.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR005248: IPR004820: IPR004821; KEGG: plm:Plim_0081 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_004268257.1 KEGG: rba:RB8365 signal peptide; SPTR: uncharacterized protein YP_004268258.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941: IPR020811: IPR020810; KEGG: plm:Plim_2603 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004268259.1 SPTR: uncharacterized protein YP_004268260.1 KEGG: rcu:RCOM_2094890 hypothetical protein; SPTR: uncharacterized protein YP_004268261.1 KEGG: sul:SYO3AOP1_0142 two component transcriptional regulator, winged helix family; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain YP_004268262.1 COGs: COG0107 imidazoleglycerol-phosphate synthase; HAMAP: histidine biosynthesis, HisF; InterPro IPR004651: IPR006062; KEGG: psl:Psta_1743 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: histidine biosynthesis, HisF; PFAM: histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_004268263.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268264.1 COGs: COG0020 undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: psl:Psta_0098 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004268265.1 KEGG: psl:Psta_2683 carbon storage regulator, CsrA; SPTR: carbon storage regulator, CsrA; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004268266.1 KEGG: rba:RB12406 nucleoside-transporter protein; SPTR: nucleoside-transporter protein; PFAM: nucleoside H+ symporter; TIGRFAM: nucleoside transporter YP_004268267.1 KEGG: plm:Plim_0886 hypothetical protein; SPTR: uncharacterized protein YP_004268268.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: pat:Patl_3333 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: uncharacterized protein; PFAM: Mechanosensitive ion channel; Conserved TM helix YP_004268269.1 KEGG: plm:Plim_2538 dipeptidyl-peptidase IV; SPTR: metallopeptidase; PFAM: ribosomal protein L7/L12 C-terminal domain YP_004268270.1 KEGG: rba:RB6409 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3500) YP_004268271.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: plm:Plim_1294 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: general secretion pathway protein F- pilus protein; PFAM: Bacterial type II secretion system protein F domain YP_004268272.1 COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: membrane protein oxaA; InterPro IPR001708: IPR019998: IPR020001; KEGG: plm:Plim_1710 hypothetical protein; PFAM: membrane insertion protein, OxaA/YidC; SPTR: uncharacterized protein; TIGRFAM: membrane insertion protein, OxaA/YidC, core; membrane insertion protein, OxoA/YidC, N-terminal; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain YP_004268273.1 COGs: COG0622 phosphoesterase; InterPro IPR004843; KEGG: plm:Plim_1711 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Probable phosphoesterase PH1616; PFAM: Calcineurin-like phosphoesterase YP_004268274.1 KEGG: plm:Plim_1914 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1551) YP_004268275.1 COGs: COG2721 altronate dehydratase; InterPro IPR013974: IPR007392; KEGG: plm:Plim_3799 altronate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase, C-terminal; SAF domain; PRIAM: Galactarate dehydratase; SPTR: altronate dehydratase; PFAM: D-galactarate dehydratase / altronate hydrolase, C terminus; SAF domain YP_004268276.1 COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264: IPR006171: IPR006295: IPR 006154; KEGG: plm:Plim_0213 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core YP_004268277.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR007127: IPR009042: IPR007627: IPR007624: IPR 007630: IPR014284: IPR012760; KEGG: plm:Plim_0214 RNA polymerase sigma factor RpoD; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_004268278.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mac:MA2408 2-heptaprenyl-1,4-naphthoquinone methyltransferase; PFAM: methyltransferase type 11; SPTR: 2-heptaprenyl-1,4-naphthoquinone methyltransferase; PFAM: methyltransferase domain YP_004268279.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB3876 arylsulfatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004268280.1 InterPro IPR005135: IPR008185; KEGG: psl:Psta_2410 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; PRIAM: deoxyribonuclease I; SMART: deoxyribonuclease I, eukaryotic; SPTR: endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase family YP_004268281.1 InterPro IPR010496; KEGG: rba:RB273 secreted glycosyl hydrolase; PFAM: protein of unknown function DUF1080; SPTR: Probable secreted glycosyl hydrolase; PFAM: Domain of Unknown Function (DUF1080) YP_004268282.1 COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: plm:Plim_0549 ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SPTR: uncharacterized protein; TIGRFAM: GTPase EngC; PFAM: protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_004268283.1 InterPro IPR000253; KEGG: plm:Plim_0878 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: uncharacterized protein; PFAM: FHA domain YP_004268284.1 KEGG: psl:Psta_1988 hypothetical protein; SPTR: uncharacterized protein YP_004268285.1 InterPro IPR012902; KEGG: plm:Plim_1480 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268286.1 KEGG: dba:Dbac_1480 AMP-dependent synthetase and ligase; SPTR: uncharacterized protein YP_004268287.1 COGs: COG0134 indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: psl:Psta_0336 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase; PRIAM: indole-3-glycerol-phosphate synthase; SPTR: indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase YP_004268288.1 InterPro IPR008538; KEGG: plm:Plim_3293 protein of unknown function DUF820; PFAM: protein of unknown function DUF820; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF820) YP_004268289.1 COGs: COG4112 phosphoesterase (MutT family); KEGG: plm:Plim_2194 phosphoesterase (MutT family)-like protein; SPTR: uncharacterized protein YP_004268290.1 KEGG: plm:Plim_2193 hypothetical protein; SPTR: uncharacterized protein YP_004268291.1 COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: plm:Plim_1905 ferrochelatase; PFAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase YP_004268292.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: plm:Plim_3820 stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: stearoyl-CoA 9-desaturase; SPTR: stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase YP_004268293.1 InterPro IPR013217; KEGG: ant:Arnit_2548 type 12 methyltransferase; PFAM: methyltransferase type 12; SPTR: methyltransferase type 12; PFAM: methyltransferase domain YP_004268294.1 InterPro IPR014995; KEGG: rba:RB12060 hypothetical protein; PFAM: protein of unknown function DUF1844; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1844) YP_004268295.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269: IPR004652; KEGG: plm:Plim_2300 TIM-barrel protein, nifR3 family; PFAM: tRNA-dihydrouridine synthase; SPTR: Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: dihydrouridine synthase (Dus); TIGRFAM: hypothetical protein YP_004268296.1 InterPro IPR013766: IPR007029; KEGG: plm:Plim_2038 thioredoxin domain protein; PFAM: YHS; thioredoxin domain; SPTR: uncharacterized protein; PFAM: YHS domain; protein of unknown function, DUF255 YP_004268297.1 COGs: COG1158 transcription termination factor; InterPro IPR011113: IPR000194: IPR004665: IPR003593; KEGG: plm:Plim_2040 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; Rho termination factor, RNA-binding; SMART: ATPase, AAA+ type, core; SPTR: transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; Rho termination factor, RNA-binding domain; TIGRFAM: transcription termination factor Rho YP_004268298.1 KEGG: psl:Psta_3319 hypothetical protein; SPTR: uncharacterized protein YP_004268299.1 InterPro IPR007157; KEGG: plm:Plim_0315 PspA/IM30 family protein; PFAM: PspA/IM30; SPTR: Phage shock protein A; PFAM: PspA/IM30 family YP_004268300.1 COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: plm:Plim_0873 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase YP_004268301.1 COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: psl:Psta_4166 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_004268302.1 COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: plm:Plim_2224 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase YP_004268303.1 KEGG: plm:Plim_2223 hypothetical protein; SPTR: uncharacterized protein YP_004268304.1 HAMAP: ribosomal protein S20; InterPro IPR002583; KEGG: rba:RB7022 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004268305.1 KEGG: rba:RB2217 hypothetical protein; SPTR: uncharacterized protein YP_004268306.1 KEGG: rba:RB3005 hypothetical protein; SPTR: uncharacterized protein YP_004268307.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031; KEGG: plm:Plim_2562 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, C-terminal; beta-ketoacyl synthase, N-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-(acyl-carrier protein) synthase; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain YP_004268308.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_03955 arylsulfatase A; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004268309.1 InterPro IPR011723; KEGG: plm:Plim_1952 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Zinc finger/thioredoxin TIGRFAM: MJ0042 family finger-like domain YP_004268310.1 InterPro IPR011444; KEGG: rba:RB7989 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004268311.1 InterPro IPR010869: IPR006311; KEGG: rba:RB7991 signal peptide; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004268312.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: plm:Plim_3296 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_004268313.1 KEGG: sto:ST1078 hypothetical protein; SPTR: uncharacterized protein ST1078 YP_004268314.1 KEGG: gga:396544 nascent polypeptide-associated complex subunit alpha; SPTR: uncharacterized protein YP_004268315.1 KEGG: plm:Plim_3752 hypothetical protein; SPTR: uncharacterized protein YP_004268316.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: plm:Plim_3420 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; PRIAM: Rhamnulokinase; SPTR: carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase YP_004268317.1 InterPro IPR000644; KEGG: acr:Acry_2880 signal-transduction protein; PFAM: cystathionine beta-synthase, core; SPTR: signal-transduction protein with CBS domains; PFAM: CBS domain YP_004268318.1 COGs: COG1573 uracil-DNA glycosylase; InterPro IPR005122: IPR005273; KEGG: plm:Plim_0200 phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase-like; SPTR: DNA polymerase, bacteriophage-type; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_004268319.1 KEGG: plm:Plim_1145 hypothetical protein; SPTR: uncharacterized protein YP_004268320.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335: IPR005791: IPR005665; KEGG: plm:Plim_1349 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: protein-export membrane protein secD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; PFAM: protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004268321.1 InterPro IPR003849; KEGG: cte:CT0065 hypothetical protein; PFAM: YajC; SPTR: uncharacterized protein; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_004268322.1 COGs: COG0343 queuine/archaeosine tRNA-ribosyltransferase; HAMAP: queuine tRNA-ribosyltransferase; InterPro IPR004803: IPR002616; KEGG: plm:Plim_1347 queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; queuine/other tRNA-ribosyltransferase; PFAM: queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004268323.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterPro IPR006463: IPR013848: IPR007197: IPR002792: IPR 005839: IPR006638; KEGG: plm:Plim_1655 RNA modification enzyme, MiaB family; PFAM: methylthiotransferase, N-terminal; radical SAM; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: TRAM domain; radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_004268324.1 KEGG: eic:NT01EI_3628 hypothetical protein; SPTR: uncharacterized protein YP_004268325.1 COGs: COG0231 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: translation elongation factor P; InterPro IPR011768: IPR013185: IPR001059: IPR015365; KEGG: rba:RB1213 elongation factor P; PFAM: Elongation factor P, C-terminal; translation elongation factor, KOW-like; translation elongation factor P/YeiP, central; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004268326.1 COGs: COG1509 lysine 2 3-aminomutase; InterPro IPR007197: IPR003739; KEGG: aeh:Mlg_0683 L-lysine 2,3-aminomutase; PFAM: radical SAM; PRIAM: lysine 2,3-aminomutase; SPTR: uncharacterized protein; TIGRFAM: lysine-2,3-aminomutase-related protein; protein of unknown function DUF160; PFAM: radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase-related protein YP_004268327.1 KEGG: psl:Psta_4425 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2293) YP_004268328.1 InterPro IPR012902; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268329.1 COGs: COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters; KEGG: glo:Glov_2260 HicB family protein; SPTR: HicB family protein YP_004268330.1 KEGG: sgr:SGR_3612 hypothetical protein; SPTR: uncharacterized protein YP_004268331.1 InterPro IPR010496; KEGG: dfe:Dfer_0069 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004268332.1 KEGG: mac:MA3753 transmembrane oligosaccharyl transferase; SPTR: transmembrane oligosaccharyl transferase YP_004268333.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004268334.1 InterPro IPR012669; KEGG: bsb:Bresu_2948 pectate lyase; PFAM: Pectic acid lyase; SPTR: Pectate lyase, ; TIGRFAM: Pectic acid lyase; PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family YP_004268335.1 COGs: COG5361 conserved hypothetical protein; InterPro IPR010679: IPR010621; KEGG: mex:Mext_0264 hypothetical protein; PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1214); protein of unknown function (DUF1254) YP_004268336.1 COGs: COG1335 amidase related to nicotinamidase; InterPro IPR000868; KEGG: rba:RB10235 hydrolase; PFAM: Isochorismatase-like; SPTR: uncharacterized protein; PFAM: Isochorismatase family YP_004268337.1 COGs: COG0177 endoIII-related endonuclease; InterPro IPR003265: IPR003651; KEGG: eli:ELI_11695 endonuclease III; PFAM: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; SPTR: endonuclease III; manually curated; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004268338.1 InterPro IPR000182; KEGG: bbr:BB4977 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: acetyltransferase (GNAT) family YP_004268339.1 InterPro IPR019587; KEGG: rop:ROP_pROB01-01230 hypothetical protein; PFAM: polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: polyketide cyclase / dehydrase and lipid transport YP_004268340.1 KEGG: vei:Veis_4985 hypothetical protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily YP_004268341.1 KEGG: ppp:PHYPADRAFT_55556 hypothetical protein; SPTR: NAD-dependent deacetylase YP_004268342.1 KEGG: rba:RB4356 hypothetical protein; SPTR: uncharacterized protein YP_004268343.1 KEGG: rba:RB11248 protein-S-isoprenylcysteine O-methyltransferase; SPTR: Similar to protein-S-isoprenylcysteine O-methyltransferase YP_004268344.1 KEGG: cyn:Cyan7425_1931 hypothetical protein; SPTR: uncharacterized protein YP_004268345.1 KEGG: cyn:Cyan7425_1930 hypothetical protein; SPTR: uncharacterized protein YP_004268346.1 InterPro IPR019587; KEGG: phe:Phep_1086 hypothetical protein; PFAM: polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: polyketide cyclase / dehydrase and lipid transport YP_004268347.1 COGs: COG3509 poly(3-hydroxybutyrate) depolymerase; InterPro IPR003140; KEGG: hau:Haur_1204 phospholipase/carboxylesterase; PFAM: phospholipase/carboxylesterase; SPTR: Possible conserved lipoprotein lpqp; PFAM: esterase PHB depolymerase YP_004268348.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: gau:GAU_3468 hypothetical protein; PFAM: activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; PFAM: activator of Hsp90 ATPase homolog 1-like protein YP_004268349.1 COGs: COG2378 transcriptional regulator protein; KEGG: pla:Plav_0108 helix-turn-helix type 11 domain-containing protein; SPTR: hypothetical protein; PFAM: HTH domain YP_004268350.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: bbe:BBR47_57590 penicillinase repressor; PFAM: Penicillinase repressor; SPTR: transcriptional regulator blaI family protein; PFAM: Penicillinase repressor YP_004268351.1 COGs: COG4219 antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: clj:CLJU_c18930 regulatory protein; PFAM: peptidase M56, BlaR1; SPTR: uncharacterized protein; PFAM: BlaR1 peptidase M56; Bacterial type II and III secretion system protein YP_004268352.1 InterPro IPR006626; KEGG: rlt:Rleg2_2256 carbohydrate-binding and sugar hydrolysis; SPTR: uncharacterized protein YP_004268353.1 COGs: COG3593 ATP-dependent endonuclease of the OLD family; KEGG: pha:PSHAa1095 hypothetical protein; SPTR: uncharacterized protein YP_004268354.1 COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: pha:PSHAa1096 DNA helicase II; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase YP_004268355.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: ptm:GSPATT00030591001 hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: chromosome undetermined scaffold_117, whole genome shotgun sequence; PFAM: WD domain, G-beta repeat YP_004268356.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: rba:RB631 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; PRIAM: [Myosin light-chain] kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase with TPR repeats; PFAM: protein kinase domain YP_004268357.1 InterPro IPR011517: IPR014284; KEGG: rba:RB621 sigma factor; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70 ECF-like; RNA polymerase sigma-70; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family YP_004268358.1 KEGG: amr:AM1_1619 hypothetical protein; SPTR: uncharacterized protein YP_004268359.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: rba:RB3632 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004268360.1 InterPro IPR002781; KEGG: cyc:PCC7424_2961 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Hypothetical membrane protein; PFAM: Sulfite exporter TauE/SafE YP_004268361.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: rba:RB9581 cinnamoyl ester hydrolase- a transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Probable cinnamoyl ester hydrolase- a transcriptional regulator; PFAM: HxlR-like helix-turn-helix YP_004268362.1 KEGG: mct:MCR_1649 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004268363.1 KEGG: ngr:NAEGRDRAFT_45627 hypothetical protein; SPTR: Predicted protein YP_004268364.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004268365.1 KEGG: edi:EDI_026430 protein TEX261; SPTR: uncharacterized protein YP_004268366.1 KEGG: ppl:POSPLDRAFT_92124 hypothetical protein; SPTR: Uncharacterized protein R402 YP_004268367.1 KEGG: psl:Psta_1503 hypothetical protein; SPTR: uncharacterized protein YP_004268368.1 InterPro IPR000468; KEGG: rha:RHA1_ro03362 barnase inhibitor; PFAM: Barstar (barnase inhibitor); SPTR: ribonuclease inhibitor; manually curated; PFAM: Barstar (barnase inhibitor) YP_004268369.1 InterPro IPR017504; KEGG: plm:Plim_1465 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03067, planctomycetes; TIGRFAM: Planctomycetes uncharacterized domain TIGR03067 YP_004268370.1 KEGG: cch:Cag_1344 hypothetical protein; SPTR: uncharacterized protein YP_004268371.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: caa:Caka_0241 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: inositol monophosphatase family; manually curated; PFAM: inositol monophosphatase family YP_004268372.1 InterPro IPR004119: IPR015897; KEGG: caa:Caka_0240 protein of unknown function DUF227; PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF227) YP_004268373.1 KEGG: cpc:Cpar_1019 GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004268374.1 KEGG: hmg:100204705 similar to predicted protein; SPTR: ABC transporter YP_004268375.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004268376.1 KEGG: psl:Psta_2254 hypothetical protein; SPTR: uncharacterized protein YP_004268377.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: bur:Bcep18194_B2916 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Zinc-containing alcohol dehydrogenase superfamily; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004268378.1 InterPro IPR000868; KEGG: rba:RB3689 hydrolase of unknown specificity; PFAM: Isochorismatase-like; SPTR: uncharacterized protein; PFAM: Isochorismatase family YP_004268379.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: rba:RB3692 XylS/AraC-type transcriptional activator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Probable Xyls/AraC-type transcriptional activator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004268380.1 KEGG: mbt:JTY_2282 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2695) YP_004268382.1 KEGG: vvi:100244554 hypothetical protein LOC100244554; SPTR: Predicted protein YP_004268383.1 KEGG: str:Sterm_1641 hypothetical protein; SPTR: uncharacterized protein YP_004268384.1 KEGG: str:Sterm_2594 hypothetical protein; SPTR: uncharacterized protein YP_004268385.1 KEGG: amr:AM1_3135 hypothetical protein; SPTR: uncharacterized protein YP_004268386.1 KEGG: saq:Sare_1587 hypothetical protein; SPTR: uncharacterized protein YP_004268387.1 KEGG: ctt:CtCNB1_3113 hypothetical protein; SPTR: uncharacterized protein YP_004268388.1 SPTR: uncharacterized protein YP_004268389.1 KEGG: amr:AM1_1951 hypothetical protein; SPTR: uncharacterized protein YP_004268390.1 KEGG: bac:BamMC406_3480 YD repeat-containing protein; SPTR: hypothetical protein YP_004268391.1 KEGG: sde:Sde_3409 hypothetical protein; SPTR: uncharacterized protein YP_004268392.1 COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: rba:RB1353 cytochrome ba3- manganese transporter MntH; SPTR: Probable cytochrome ba3- manganese transporter mntH; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_004268393.1 KEGG: ppp:PHYPADRAFT_76860 hypothetical protein; SPTR: Predicted protein; manually curated; PFAM: transposase DDE domain YP_004268394.1 COGs: COG1678 transcriptional regulator protein; HAMAP: protein of unknown function DUF179; InterPro IPR003774; KEGG: plm:Plim_1432 protein of unknown function DUF179; PFAM: protein of unknown function DUF179; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1678 YP_004268395.1 InterPro IPR018958; KEGG: cpi:Cpin_0581 hypothetical protein; PFAM: cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR: uncharacterized protein YP_004268396.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rba:RB11488 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: short chain dehydrogenase; PFAM: short chain dehydrogenase YP_004268397.1 InterPro IPR018958; KEGG: uma:UM06514.1 hypothetical protein; PFAM: cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR: SMI1 / KNR4 family protein; PFAM: SMI1 / KNR4 family YP_004268398.1 COGs: COG0811 biopolymertransporter; InterPro IPR002898; KEGG: plm:Plim_0746 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family YP_004268399.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR001440: IPR019734; KEGG: plm:Plim_3586 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein YP_004268400.1 COGs: COG2045 phosphosulfolactate phosphohydrolase; HAMAP: 2-phosphosulfolactate phosphatase; InterPro IPR005238; KEGG: plm:Plim_1320 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: uncharacterized protein; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase YP_004268401.1 COGs: COG0781 transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR006027: IPR011605; KEGG: plm:Plim_3601 transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004268402.1 COGs: COG0054 riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: plm:Plim_3600 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004268403.1 COGs: COG1158 transcription termination factor; InterPro IPR011112: IPR011113: IPR000194: IPR004665: IPR 011129: IPR003593; KEGG: plm:Plim_3599 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004268404.1 KEGG: dpo:Dpse_GA26308 GA26308 gene product from transcript GA26308-RA YP_004268405.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: psl:Psta_3784 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; manually curated; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_004268406.1 COGs: COG0126 3-phosphoglycerate kinase; HAMAP: phosphoglycerate kinase; InterPro IPR001576; KEGG: rba:RB10500 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_004268407.1 KEGG: sbi:SORBI_07g022470 hypothetical protein; SPTR: uncharacterized protein Sb07g022470 YP_004268408.1 KEGG: cre:CHLREDRAFT_180761 hypothetical protein; SPTR: glycosyltransferase YP_004268409.1 KEGG: sso:SSO2098 tricorn protease (tri); SPTR: peptidase S41 YP_004268410.1 InterPro IPR002559; KEGG: rba:RB3871 transposase; PFAM: transposase, IS4-like; SPTR: Probable transposase; PFAM: transposase DDE domain YP_004268411.1 InterPro IPR002110; KEGG: pmx:PERMA_0371 MHC_I C-terminus family protein; PFAM: ankyrin repeat; SMART: ankyrin repeat; SPTR: ankyrin repeat domain-containing protein, ; PFAM: ankyrin repeat YP_004268412.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: dvm:DvMF_2960 Mg2 transporter protein CorA family protein; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Mg2 transporter protein CorA family protein; PFAM: CorA-like Mg2+ transporter protein YP_004268413.1 COGs: COG5361 conserved hypothetical protein; InterPro IPR010679: IPR010621; KEGG: rle:pRL70183 hypothetical protein; PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; SPTR: Conserved hypothetical exported protein; PFAM: protein of unknown function (DUF1214); protein of unknown function (DUF1254); Neurotransmitter-gated ion-channel transmembrane region; Neurotransmitter-gated ion-channel ligand binding domain YP_004268414.1 KEGG: scl:sce4552 protein kinase; SPTR: protein kinase YP_004268415.1 KEGG: scb:SCAB_40441 integral membrane protein; SPTR: integral membrane protein YP_004268416.1 KEGG: nda:Ndas_0253 cobalt transporter; SPTR: uncharacterized protein YP_004268417.1 COGs: COG4639 kinase; InterPro IPR006674: IPR006675; KEGG: scl:sce6902 polyA polymerase related protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SPTR: uncharacterized protein; TIGRFAM: HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004268418.1 KEGG: pen:PSEEN2247 hypothetical protein; SPTR: uncharacterized protein; PFAM: RNA ligase YP_004268419.1 KEGG: spu:589839 similar to F-box and WD-40 domain protein 10; SPTR: Cotton fiber expressed protein-like protein YP_004268420.1 InterPro IPR004027; KEGG: rba:RB11438 Zn-binding protein; PFAM: SEC-C motif; SPTR: uncharacterized protein; PFAM: SEC-C motif YP_004268421.1 KEGG: ame:410239 similar to PRIP-interacting protein PIPMT; SPTR: Kinesin YP_004268422.1 InterPro IPR007029; KEGG: plm:Plim_0284 hypothetical protein; PFAM: YHS; SPTR: uncharacterized protein; PFAM: YHS domain YP_004268423.1 COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: rba:RB12724 adenine-specific methyltransferase; PFAM: DNA methylase N-4/N-6; SPTR: adenine-specific methyltransferase; PFAM: DNA methylase YP_004268424.1 COGs: COG1466 DNA polymerase III subunit delta; InterPro IPR010372: IPR005790; KEGG: plm:Plim_3591 DNA polymerase III delta subunit; PFAM: DNA polymerase III delta; SPTR: DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III subunit delta YP_004268425.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: plm:Plim_0874 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004268426.1 InterPro IPR003593; KEGG: plm:Plim_3352 ATPase AAA; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004268427.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013655: IPR013767: IPR013656: IPR003661: IPR 003594: IPR000014: IPR001610; KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; PAS fold-3; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004268428.1 COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017: IPR005475: IPR011603; KEGG: tra:Trad_0897 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase-like, pyrimidine-binding domain; dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: alpha-ketoglutarate decarboxylase; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; PFAM: dehydrogenase E1 component; transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_004268429.1 KEGG: cel:C43E11.1 Conserved oligomeric Golgi (COG) Component family member (cogc-5); SPTR: Conserved oligomeric golgi (Cog) component protein 5 YP_004268430.1 COGs: COG0063 sugar kinase; InterPro IPR000631; KEGG: psl:Psta_3845 carbohydrate kinase, YjeF related protein; PFAM: Uncharacterised protein family, carbohydrate kinase-related; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_004268431.1 COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890: IPR011625; KEGG: psl:Psta_3267 alpha-2-macroglobulin; PFAM: alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin, N-terminal 2; SPTR: alpha-2-macroglobulin-like protein; PFAM: alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; alpha-2-macroglobulin family; alpha-2-macroglobulin family N-terminal region YP_004268432.1 KEGG: psl:Psta_2133 hypothetical protein; SPTR: uncharacterized protein YP_004268433.1 InterPro IPR019288; KEGG: plm:Plim_0041 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: uncharacterized protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YP_004268434.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: psl:Psta_2701 ATPase AAA; PFAM: ATPase, AAA-3; SPTR: ATPase associated with various cellular activities, AAA-3; PFAM: ATPase family associated with various cellular activities (AAA) YP_004268435.1 InterPro IPR002645; KEGG: plm:Plim_4224 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004268436.1 COGs: COG1305 transglutaminase-like protein; InterPro IPR002931; KEGG: psl:Psta_2495 transglutaminase; PFAM: transglutaminase-like; SMART: transglutaminase-like; SPTR: transglutaminase domain protein; PFAM: transglutaminase-like superfamily YP_004268437.1 COGs: COG4325 membrane protein; InterPro IPR018723; KEGG: alv:Alvin_1166 protein of unknown function DUF2254, membrane; PFAM: protein of unknown function DUF2254, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2254) YP_004268438.1 KEGG: plm:Plim_4137 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2007) YP_004268439.1 KEGG: plm:Plim_4137 hypothetical protein; SPTR: uncharacterized protein YP_004268440.1 KEGG: nca:Noca_0182 molybdopterin-guanine dinucleotide biosynthesis protein; SPTR: integron gene cassette protein YP_004268441.1 COGs: COG1351 alternative thymidylate synthase; HAMAP: Thymidylate synthase thyX; InterPro IPR003669; KEGG: plm:Plim_0014 thymidylate synthase, flavin-dependent; PFAM: Thymidylate synthase ThyX; SPTR: FAD-dependent thymidylate synthase; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_004268442.1 KEGG: tva:TVAG_005450 hypothetical protein; SPTR: LIM-type zinc finger-containing protein YP_004268443.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: amc:MADE_03565 permease; PFAM: protein of unknown function DUF318, transmembrane; SPTR: Permease; PFAM: Predicted permease YP_004268444.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: plm:Plim_0849 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase YP_004268445.1 KEGG: isc:IscW_ISCW022934 eph receptor tyrosine kinase, SPTR: Eph receptor tyrosine kinase YP_004268446.1 KEGG: caa:Caka_1809 hypothetical protein; SPTR: uncharacterized protein YP_004268447.1 COGs: COG3296 conserved hypothetical protein; KEGG: sde:Sde_0007 hypothetical protein; SPTR: uncharacterized protein YP_004268448.1 KEGG: dol:Dole_3082 hypothetical protein; SPTR: uncharacterized protein YP_004268449.1 COGs: COG3739 Uncharacterized integral membrane protein; InterPro IPR008535; KEGG: kko:Kkor_0405 protein of unknown function DUF817; PFAM: protein of unknown function DUF817; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF817) YP_004268450.1 COGs: COG0815 Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; InterPro IPR004563: IPR003010; KEGG: plm:Plim_3232 apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_004268451.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110: IPR001453: IPR005111: IPR020817; KEGG: plm:Plim_3362 molybdenum cofactor synthesis domain protein; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004268452.1 SPTR: uncharacterized protein YP_004268453.1 InterPro IPR007029; KEGG: plm:Plim_2082 hypothetical protein; PFAM: YHS; SPTR: Zinc metalloprotease ZmpB, ; PFAM: YHS domain YP_004268454.1 KEGG: plm:Plim_0058 membrane bound transporter; SPTR: uncharacterized protein YP_004268455.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR003439; KEGG: plm:Plim_3290 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SPTR: phospholipid-lipopolysaccharide ABC transporter; PFAM: ABC transporter transmembrane region YP_004268456.1 COGs: COG3447 integral membrane sensor domain; InterPro IPR007895; KEGG: rhi:NGR_b16830 two component sensor-kinase; PFAM: MASE1; SPTR: sensory transduction protein Kinase; PFAM: MASE1 YP_004268457.1 COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153: IPR003148; KEGG: rmr:Rmar_0424 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; SPTR: uncharacterized protein; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family YP_004268459.1 KEGG: bte:BTH_I2783 carbamoyl phosphate synthase small subunit; SPTR: uncharacterized protein YP_004268460.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: plm:Plim_1515 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: silent information regulator protein Sir2; PFAM: Sir2 family YP_004268461.1 KEGG: tro:trd_A0015 NADH dehydrogenase (h(2)o(2)-forming nadh oxidase)(nadh:oxygen oxidoreductase); SPTR: nitroreductase; PFAM: nitroreductase family YP_004268462.1 InterPro IPR010496; KEGG: rba:RB3944 hypothetical protein; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004268463.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sus:acid_6855 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase; PFAM: Sulfatase YP_004268464.1 KEGG: mxa:MXAN_3980 hypothetical protein; SPTR: uncharacterized protein YP_004268465.1 COGs: COG2898 conserved hypothetical protein; KEGG: mab:MAB_2286 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156) YP_004268466.1 COGs: COG1137 ABC-type (unclassified) transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_1126 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004268467.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: rba:RB4433 DNA protection during starvation protein; PFAM: Ferritin/Dps protein; SPTR: Probable DNA protection during starvation protein; PFAM: Ferritin-like domain YP_004268468.1 InterPro IPR018392: IPR002482; KEGG: plm:Plim_2228 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: peptidoglycan-binding LysM; PFAM: LysM domain YP_004268469.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: plm:Plim_0048 integral membrane protein; SPTR: uncharacterized protein; PFAM: MMPL family YP_004268470.1 KEGG: psl:Psta_0226 hypothetical protein; SPTR: uncharacterized protein YP_004268471.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: psl:Psta_0467 protein of unknown function DUF255; SPTR: uncharacterized protein; PFAM: protein of unknown function, DUF255 YP_004268472.1 KEGG: dmo:Dmoj_GI11655 GI11655 gene product from transcript GI11655-RA; SPTR: Xyppx repeat family YP_004268473.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: psl:Psta_4738 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004268474.1 KEGG: plm:Plim_2599 hypothetical protein; SPTR: uncharacterized protein YP_004268475.1 COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: plm:Plim_2598 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004268476.1 KEGG: mcc:710795 myeloid/lymphoid or mixed-lineage leukemia 2; SPTR: uncharacterized protein YP_004268477.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_3181 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004268478.1 InterPro IPR004846; KEGG: plm:Plim_0641 hypothetical protein; PFAM: type II/III secretion system; SPTR: uncharacterized protein; PFAM: Bacterial type II and III secretion system protein YP_004268479.1 InterPro IPR000297; KEGG: plm:Plim_3331 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Probable peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain YP_004268480.1 COGs: COG1197 transcription-repair coupling factor (superfamily II helicase); InterPro IPR003711: IPR011545: IPR001650: IPR005118: IPR 004576: IPR014001; KEGG: plm:Plim_3728 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; transcription factor CarD; DNA/RNA helicase, C-terminal; transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004268481.1 KEGG: acr:Acry_3082 hypothetical protein; SPTR: uncharacterized protein YP_004268482.1 KEGG: plm:Plim_2607 protein of unknown function DUF1568; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004268483.1 InterPro IPR010869; KEGG: psl:Psta_1944 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004268484.1 KEGG: plm:Plim_3651 hypothetical protein; SPTR: uncharacterized protein YP_004268485.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR005835; KEGG: plm:Plim_3650 glucosamine-1-phosphate N-acetyltransferase; PFAM: nucleotidyl transferase; PRIAM: glucosamine-1-phosphate N-acetyltransferase; SPTR: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_004268486.1 KEGG: plm:Plim_2979 hypothetical protein; SPTR: uncharacterized protein YP_004268487.1 COGs: COG0623 enoyl-(acyl-carrier-protein); InterPro IPR002198; KEGG: rba:RB8125 trans-2-enoyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: trans-2-enoyl-ACP reductase; PFAM: short chain dehydrogenase YP_004268488.1 COGs: COG1017 Hemoglobin-like flavoprotein; HAMAP: Flavohemoprotein; InterPro IPR000971: IPR008333: IPR001433; KEGG: rba:RB12262 nitric oxide dioxygenase; PFAM: oxidoreductase FAD/NAD(P)-binding; Globin, subset; oxidoreductase, FAD-binding domain; PRIAM: nitric oxide dioxygenase; SPTR: Flavohemoprotein; PFAM: oxidoreductase FAD-binding domain; Globin; oxidoreductase NAD-binding domain YP_004268489.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rba:RB8152 a transcriptional regulator; PFAM: transcription regulator Rrf2; SPTR: uncharacterized protein; TIGRFAM: transcription regulator Rrf2; PFAM: transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_004268490.1 KEGG: pfo:Pfl01_1041 ATPase-like; SPTR: abortive infection protein YP_004268491.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: rba:RB638 serine/threonine protein kinase; PFAM: pyrrolo-quinoline quinone repeat; SMART: pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Similar to serine/threonine protein kinase; PFAM: PQQ enzyme repeat YP_004268492.1 COGs: COG4188 dienelactone hydrolase; KEGG: gvi:glr1689 hypothetical protein; SPTR: uncharacterized protein; PFAM: isoform II YP_004268493.1 KEGG: sfu:Sfum_0702 ABC transporter; SPTR: ABC transporter related YP_004268494.1 KEGG: pkn:PKH_124380 hypothetical protein; SPTR: uncharacterized protein YP_004268495.1 InterPro IPR002559; KEGG: rba:RB3871 transposase; PFAM: transposase, IS4-like; SPTR: Probable transposase; PFAM: transposase DDE domain YP_004268496.1 COGs: COG0539 ribosomal protein S1; InterPro IPR003029: IPR018032; KEGG: plm:Plim_1620 ribosomal protein S1; PFAM: ribosomal protein S1, RNA binding domain; SPTR: 30S ribosomal protein S1; TIGRFAM: ribosomal S1 synthesis/modification protein; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004268497.1 COGs: COG1886 flagellar motor switch/type III secretory pathway protein; InterPro IPR001543; KEGG: plm:Plim_4041 surface presentation of antigens (SpoA) protein; PFAM: Surface presentation of antigen (SpoA); SPTR: Probable flagellar motor switch protein fliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN YP_004268498.1 KEGG: cel:C10F3.1 Chondroitin Proteoglycan family member (cpg-4); SPTR: Chondroitin proteoglycan 4 YP_004268499.1 InterPro IPR003369; KEGG: plm:Plim_2725 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: uncharacterized protein; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004268500.1 InterPro IPR003369; KEGG: plm:Plim_2724 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004268501.1 COGs: COG0365 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; HAMAP: acetyl-coenzyme A synthetase; InterPro IPR000873: IPR011904; KEGG: plm:Plim_4118 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: acetate--CoA ligase; SPTR: acetate--CoA ligase; TIGRFAM: acetate--CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_004268502.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: cyc:PCC7424_5106 protein of unknown function DUF820; PFAM: protein of unknown function DUF820; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF820) YP_004268503.1 KEGG: ahe:Arch_1084 methyltransferase; SPTR: methyltransferase YP_004268504.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744: IPR019591; KEGG: plm:Plim_0393 cobyrinic acid ac-diamide synthase; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: uncharacterized protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ YP_004268505.1 COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: rmr:Rmar_2026 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Cysteine desulfurase SufE subunit; PFAM: Fe-S metabolism associated domain YP_004268506.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192: IPR010970; KEGG: sro:Sros_5983 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase, SufS family protein; TIGRFAM: Cysteine desulfurase, SufS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_004268507.1 COGs: COG0845 membrane-fusion protein; InterPro IPR006143; KEGG: rba:RB11073 acriflavin resistance protein A; PFAM: Secretion protein HlyD; SPTR: Acriflavine resistance protein A [Precursor]; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004268508.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: rba:RB11072 acriflavine resistance protein B; PFAM: Acriflavin resistance protein; SPTR: Acriflavine resistance protein B; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004268509.1 COGs: COG1570 exonuclease VII large subunit; HAMAP: exonuclease VII, large subunit; InterPro IPR003753: IPR004365: IPR020579; KEGG: plm:Plim_0430 exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: exodeoxyribonuclease 7 large subunit; TIGRFAM: exonuclease VII, large subunit; PFAM: exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII large subunit YP_004268510.1 HAMAP: exonuclease VII, small subunit; InterPro IPR003761; KEGG: rba:RB2146 exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII, small subunit; SPTR: exodeoxyribonuclease VII small subunit; TIGRFAM: exonuclease VII, small subunit; PFAM: exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII small subunit YP_004268511.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861: IPR004839; KEGG: plm:Plim_3414 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: Histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004268512.1 KEGG: psl:Psta_4207 glycoside hydrolase family 2 sugar binding protein; SPTR: glycoside hydrolase family 2 sugar binding protein; PFAM: glycosyl hydrolases family 2, sugar binding domain YP_004268513.1 COGs: COG0393 conserved hypothetical protein; HAMAP: UPF0145 protein ybjQ; InterPro IPR002765; KEGG: pru:PRU_1099 hypothetical protein; PFAM: Uncharacterised protein family UPF0145; SPTR: UPF0145 protein HMPREF6745_1609; PFAM: Domain of unknown function (DUF74) YP_004268514.1 COGs: COG3875 conserved hypothetical protein; KEGG: plm:Plim_0317 hypothetical protein; SPTR: transcriptional regulator; PFAM: Uncharacterized conserved protein (DUF2088) YP_004268515.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: plm:Plim_0316 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-70 factor, ECF subfamily protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004268516.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013655: IPR013767: IPR003661: IPR003594: IPR 001789: IPR000014: IPR001610; KEGG: gau:GAU_2866 two-component hybrid sensor and regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; PAS fold-3; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS; Signal transduction response regulator, receiver domain; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004268518.1 COGs: COG1533 DNA repair photolyase; InterPro IPR007197: IPR006638; KEGG: plm:Plim_1769 radical SAM protein; PFAM: radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: radical SAM; PFAM: radical SAM superfamily YP_004268519.1 KEGG: sgr:SGR_6789 cytochrome P450; SPTR: cytochrome P450 YP_004268520.1 KEGG: cyn:Cyan7425_4649 protein of unknown function DUF542 ScdA domain protein; SPTR: uncharacterized protein; PFAM: Domain of Unknown function (DUF542) YP_004268521.1 COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: har:HEAR2969 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; PFAM: Cupin domain YP_004268522.1 COGs: COG3189 conserved hypothetical protein; InterPro IPR007438; KEGG: mpd:MCP_0908 hypothetical protein; PFAM: protein of unknown function DUF488; SPTR: uncharacterized protein; PFAM: protein of unknown function, DUF488 YP_004268523.1 InterPro IPR013217; KEGG: gbm:Gbem_3445 methyltransferase type 11; PFAM: methyltransferase type 12; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004268524.1 COGs: COG1134 ABC-type polysaccharide/polyol phosphate transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: cyh:Cyan8802_2759 ABC transporter; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter YP_004268525.1 KEGG: msm:MSMEG_0387 Rmt2 protein; SPTR: Rmt2 protein; PFAM: Cephalosporin hydroxylase YP_004268526.1 KEGG: bfo:BRAFLDRAFT_68217 hypothetical protein; SPTR: Bv80/Bb-1 YP_004268527.1 KEGG: psl:Psta_2104 ATP-dependent DNA ligase; SPTR: ATP-dependent DNA ligase YP_004268528.1 COGs: COG0174 glutamine synthetase; InterPro IPR008147: IPR008146: IPR004809; KEGG: plm:Plim_0683 glutamine synthetase; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp; PRIAM: glutamate--ammonia ligase; SPTR: glutamine synthetase, type I; TIGRFAM: glutamine synthetase type I; manually curated; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase YP_004268529.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: plm:Plim_0382 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004268530.1 KEGG: plm:Plim_1714 hypothetical protein; SPTR: uncharacterized protein YP_004268531.1 InterPro IPR011465; KEGG: plm:Plim_3142 protein of unknown function DUF1571; PFAM: protein of unknown function DUF1571; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1571) YP_004268532.1 COGs: COG4782 conserved hypothetical protein; InterPro IPR010297; KEGG: cts:Ctha_1145 protein of unknown function DUF900 hydrolase family protein; PFAM: protein of unknown function DUF900, hydrolase-like; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase of unknown function (DUF900) YP_004268533.1 KEGG: net:Neut_1999 hypothetical protein; SPTR: uncharacterized protein YP_004268534.1 InterPro IPR001387; KEGG: cbd:CBUD_0580 repressor protein C2; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Predicted transcriptional regulator with C-terminal CBS domains; PFAM: Helix-turn-helix YP_004268535.1 KEGG: plm:Plim_0190 hypothetical protein; SPTR: uncharacterized protein YP_004268536.1 KEGG: plm:Plim_0189 hypothetical protein; SPTR: uncharacterized protein YP_004268537.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB5195 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004268538.1 InterPro IPR000182; KEGG: eca:ECA0934 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004268539.1 KEGG: plm:Plim_1987 hypothetical protein; SPTR: uncharacterized protein; PFAM: prolyl oligopeptidase family YP_004268540.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484: IPR018485: IPR006000; KEGG: plm:Plim_0722 xylulokinase; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal; SPTR: Xylulose kinase; TIGRFAM: Xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase YP_004268541.1 COGs: COG4700 Uncharacterized protein containing a divergent form of TPR repeats; KEGG: amr:AM1_0607 TPR domain-containing protein; SPTR: hypothetical protein YP_004268542.1 KEGG: plm:Plim_2871 hypothetical protein; SPTR: uncharacterized protein YP_004268543.1 KEGG: bge:BC1002_5208 FimV C-terminal domain protein; SPTR: translation initiation factor IF-2 YP_004268544.1 COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: plm:Plim_2892 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Probable transaminase; PFAM: Aminotransferase class I and II YP_004268545.1 KEGG: psl:Psta_2771 hypothetical protein; SPTR: uncharacterized protein YP_004268546.1 InterPro IPR012902; KEGG: plm:Plim_0949 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268547.1 COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: cyn:Cyan7425_0821 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase, MBOAT; SPTR: membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family YP_004268548.1 KEGG: cpi:Cpin_2076 hypothetical protein; SPTR: uncharacterized protein YP_004268549.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004268550.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004268551.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR000185: IPR011115: IPR011130: IPR011116: IPR 004027; KEGG: plm:Plim_2368 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif; SPTR: protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, Secsubunit alpha YP_004268552.1 KEGG: plm:Plim_2686 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004268553.1 InterPro IPR017504; KEGG: bxe:Bxe_A1422 benzoyl-CoA-dihydrodiol lyase; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03067, planctomycetes; TIGRFAM: Planctomycetes uncharacterized domain TIGR03067 YP_004268554.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: rba:RB9982 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein; PFAM: oxidoreductase, N-terminal; SPTR: Probable 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein- NAD-dependent oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004268555.1 COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: plm:Plim_3155 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: 2-dehydro-3-deoxyglucarate aldolase; SPTR: 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family YP_004268556.1 COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: plm:Plim_3156 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Probable assimilatory nitrite reductase [NAD(P)H] small subunit; PFAM: Rieske [2Fe-2S] domain YP_004268557.1 COGs: COG2054 Uncharacterized kinase related to aspartokinase uridylate kinase; KEGG: plm:Plim_2332 uncharacterized aspartokinase uridylate kinase-like protein; SPTR: Uncharacterized aspartokinase uridylate kinase-like protein YP_004268558.1 InterPro IPR012902; KEGG: plm:Plim_0072 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268559.1 InterPro IPR012902; KEGG: plm:Plim_0072 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268560.1 InterPro IPR012902; KEGG: plm:Plim_0072 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268561.1 InterPro IPR012902; KEGG: plm:Plim_0072 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268562.1 KEGG: plm:Plim_0073 hypothetical protein; SPTR: uncharacterized protein YP_004268563.1 InterPro IPR004843; KEGG: zpr:ZPR_2513 probable beta-galactosidase; PFAM: metallophosphoesterase; SPTR: Probable beta-galactosidase; PFAM: Calcineurin-like phosphoesterase; Domain of unknown function (DUF1083) YP_004268564.1 InterPro IPR012902; KEGG: plm:Plim_0032 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268565.1 KEGG: pcs:Pc13g06510 Pc13g06510; SPTR: uncharacterized protein YP_004268566.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: psl:Psta_2566 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004268567.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: plm:Plim_0254 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004268568.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: rba:RB5876 serine/threonine-protein kinase; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase; PFAM: protein kinase domain YP_004268569.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: mpt:Mpe_A0642 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004268570.1 InterPro IPR001478; KEGG: aph:APH_1148 protease DO family protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Protease DO family protein; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004268571.1 KEGG: cag:Cagg_2912 domain of unknown function DUF1731; SPTR: acyl transferase YP_004268572.1 KEGG: ttj:TTHB139 major facilitator superfamily permease; SPTR: uncharacterized protein YP_004268573.1 KEGG: afv:AFLA_089620 chalcone synthase, SPTR: uncharacterized protein YP_004268574.1 KEGG: mba:Mbar_A1824 hypothetical protein; SPTR: PAS/PAC sensor protein YP_004268575.1 KEGG: tva:TVAG_120590 hypothetical protein; SPTR: uncharacterized protein YP_004268576.1 InterPro IPR006640; KEGG: csa:Csal_0864 hypothetical protein; SMART: protein of unknown function SprT; SPTR: uncharacterized protein; PFAM: SprT-like family YP_004268577.1 KEGG: amd:AMED_6073 two-component system histidine kinase; SPTR: amino acid permease YP_004268578.1 KEGG: psl:Psta_2287 hypothetical protein; SPTR: uncharacterized protein; PFAM: PGAP1-like protein YP_004268579.1 KEGG: plm:Plim_2088 hypothetical protein; SPTR: uncharacterized protein YP_004268580.1 COGs: COG2124 cytochrome P450; InterPro IPR001128; KEGG: bja:blr3832 cytochrome P450; PFAM: cytochrome P450; SPTR: Blr3832 protein; PFAM: cytochrome P450 YP_004268581.1 KEGG: caa:Caka_2640 hypothetical protein; SPTR: Bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_004268582.1 COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: chl:Chy400_2647 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200) YP_004268583.1 KEGG: nwa:Nwat_0422 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3478) YP_004268584.1 KEGG: nwa:Nwat_0422 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3478) YP_004268585.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: hoh:Hoch_6213 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004268586.1 InterPro IPR003751; KEGG: plm:Plim_3470 carbon storage regulator; PFAM: carbon storage regulator; SPTR: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004268587.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: psl:Psta_3578 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004268588.1 COGs: COG1309 transcriptional regulator; InterPro IPR001647; KEGG: tkm:TK90_1922 TetR family transcriptional regulator; PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004268589.1 KEGG: ptm:GSPATT00030816001 hypothetical protein; SPTR: chromosome undetermined scaffold_119, whole genome shotgun sequence YP_004268590.1 KEGG: mpt:Mpe_B0286 hypothetical protein; SPTR: uncharacterized protein YP_004268591.1 KEGG: tau:Tola_1266 outer membrane adhesin like protein; SPTR: outer membrane adhesin like protein YP_004268592.1 KEGG: lif:LinJ26.0350 hypothetical protein; SPTR: uncharacterized protein YP_004268593.1 KEGG: sus:acid_7627 plasmid related protein; SPTR: Plasmid related protein YP_004268594.1 KEGG: ara:Arad_0724 short chain dehydrogenase; SPTR: Short-chain dehydrogenase protein YP_004268595.1 KEGG: bbe:BBR47_16280 hypothetical protein; SPTR: Conserved hypothetical membrane protein YP_004268596.1 KEGG: tpr:Tpau_1380 nitrite reductase (NAD(P)H), large subunit YP_004268597.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: cyc:PCC7424_5548 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004268598.1 KEGG: emi:Emin_0877 AraC family transcriptional regulator; SPTR: AraC family transcriptional regulator YP_004268599.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR003593: IPR003959: IPR008823; KEGG: dth:DICTH_1502 Holliday junction DNA helicase RuvB; PFAM: ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, Ruvsubunit beta YP_004268600.1 KEGG: ssl:SS1G_10400 hypothetical protein YP_004268601.1 KEGG: mse:Msed_0948 hypothetical protein; SPTR: uncharacterized protein YP_004268602.1 KEGG: tgu:100228361 similar to glutamyl aminopeptidase (aminopeptidase A); SPTR: Predicted protein YP_004268603.1 COGs: COG4227 antirestriction protein; InterPro IPR013610; KEGG: mes:Meso_3793 hypothetical protein; PFAM: Domain of unknown function DUF1738; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1738) YP_004268604.1 InterPro IPR013216; KEGG: mem:Memar_0889 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004268605.1 KEGG: alv:Alvin_2298 hypothetical protein; SPTR: uncharacterized protein YP_004268606.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: dra:DR_C0006 hypothetical protein; PFAM: deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004268607.1 KEGG: scl:sce6096 hypothetical protein; SPTR: uncharacterized protein YP_004268608.1 KEGG: mgi:Mflv_2880 hypothetical protein; SPTR: uncharacterized protein YP_004268609.1 COGs: COG4928 P-loop ATPase; InterPro IPR011646; KEGG: ant:Arnit_0998 kap P-loop domain-containing protein; PFAM: KAP P-loop; SPTR: KAP P-loop domain protein; PFAM: KAP family P-loop domain YP_004268610.1 InterPro IPR001387; KEGG: rba:RB7754 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004268611.1 KEGG: pat:Patl_2748 hypothetical protein; SPTR: uncharacterized protein YP_004268612.1 COGs: COG0286 type I restriction-modification system methyltransferase subunit; InterPro IPR003356: IPR004546; KEGG: dvu:DVU1709 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_004268613.1 KEGG: nde:NIDE1900 type I restriction system, specificity protein HsdS; SPTR: uncharacterized protein; PFAM: type I restriction modification DNA specificity domain YP_004268614.1 COGs: COG0610 type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001: IPR007409: IPR006935: IPR004473; KEGG: mca:MCA1893 type I restriction-modification system, R subunit; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: type I restriction enzyme R protein N terminus (HSDR_N); type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family YP_004268615.1 COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: ypb:YPTS_4096 hypothetical protein; PFAM: protein of unknown function DUF45; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF45 YP_004268616.1 COGs: COG3472 conserved hypothetical protein; InterPro IPR004919: IPR018651: IPR007421; KEGG: chl:Chy400_0776 protein of unknown function DUF262; PFAM: protein of unknown function DUF2081; protein of unknown function DUF262; ATPase, AAA-4; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2081); Divergent AAA domain; protein of unknown function DUF262 YP_004268617.1 KEGG: cdu:CD36_35450 low-temperature viability protein, SPTR: Low-temperature viability protein YP_004268618.1 KEGG: fre:Franean1_2775 hypothetical protein; SPTR: ankyrin YP_004268619.1 KEGG: gox:GOX2117 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; SPTR: Proline dehydrogenase/d-1-pyrroline-5-carboxylate dehydrogenase YP_004268620.1 KEGG: sro:Sros_5922 uroporphyrinogen-III synthase-like protein; SPTR: uroporphyrinogen-III synthase-like protein YP_004268621.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004268622.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004268623.1 KEGG: sro:Sros_7410 hypothetical protein; SPTR: ABC transporter related protein YP_004268624.1 KEGG: ngr:NAEGRDRAFT_70508 hypothetical protein; SPTR: ChlD4 YP_004268625.1 KEGG: syd:Syncc9605_2548 hypothetical protein; SPTR: uncharacterized protein YP_004268626.1 KEGG: mes:Meso_4543 cobyrinic acid a,c-diamide synthase; SPTR: cobyrinic acid a,c-diamide synthase YP_004268627.1 COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: bgl:bglu_4p0670 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase YP_004268628.1 KEGG: hoh:Hoch_0964 hypothetical protein; SPTR: uncharacterized protein YP_004268629.1 KEGG: nis:NIS_1563 general secretory pathway protein E; SPTR: general secretory pathway protein E YP_004268630.1 KEGG: ame:724637 similar to endoplasmic reticulum chaperone SIL1 homolog; SPTR: uncharacterized protein Sb02g042200 YP_004268631.1 KEGG: kcr:Kcr_1180 DNA polymerase I; SPTR: DNA polymerase YP_004268632.1 KEGG: lsa:LSA1566 transcription accessory protein, RNA-binding; SPTR: Probable signal-transducing histidine kinase YP_004268633.1 COGs: COG3236 conserved hypothetical protein; InterPro IPR012816; KEGG: bph:Bphy_3371 hypothetical protein; PFAM: Conserved hypothetical protein CHP02464; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1768); TIGRFAM: conserved hypothetical protein, ribA/ribD-fused YP_004268634.1 InterPro IPR019627; KEGG: abo:ABO_0763 hypothetical protein; PFAM: protein of unknown function DUF2493; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2493) YP_004268635.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115: IPR002941; KEGG: rba:RB5884 transcriptional regulator; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; SPTR: uncharacterized protein; PFAM: DNA methylase; ParB-like nuclease domain YP_004268636.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119: IPR011109; KEGG: psl:Psta_2249 recombinase; PFAM: Resolvase, N-terminal; Recombinase; SPTR: Recombinase; PFAM: Recombinase; Resolvase, N terminal domain YP_004268637.1 KEGG: rba:RB5432 hypothetical protein; SPTR: uncharacterized protein YP_004268638.1 KEGG: cci:CC1G_01821 hypothetical protein; SPTR: uncharacterized protein YP_004268639.1 KEGG: bmq:BMQ_4987 sodium-dependent transporter; SPTR: chromosome undetermined SCAF9926, whole genome shotgun sequence YP_004268640.1 InterPro IPR019734: IPR001440; KEGG: ote:Oter_1428 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004268641.1 InterPro IPR019734: IPR001440; KEGG: ote:Oter_1428 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004268642.1 InterPro IPR019734: IPR001440; KEGG: ote:Oter_1428 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004268643.1 COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593: IPR003959; KEGG: ote:Oter_1429 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; PRIAM: microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: cell division cycle protein 48-related protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004268644.1 KEGG: amc:MADE_03484 quinol oxidase subunit II; SPTR: Quinol oxidase subunit II YP_004268645.1 KEGG: bcv:Bcav_1709 binding-protein-dependent transport systems inner membrane component; SPTR: Predicted arginine uptake transporter YP_004268646.1 KEGG: dfe:Dfer_0681 hypothetical protein; SPTR: uncharacterized protein YP_004268647.1 COGs: COG4185 conserved hypothetical protein; KEGG: pen:PSEEN3415 hypothetical protein; SPTR: uncharacterized protein; PFAM: Zeta toxin YP_004268648.1 KEGG: glo:Glov_2176 hypothetical protein; SPTR: uncharacterized protein YP_004268649.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: gvi:gsl3590 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein; PFAM: HxlR-like helix-turn-helix YP_004268650.1 COGs: COG1182 acyl carrier protein phosphodiesterase; HAMAP: FMN-dependent NADH-azoreductase; InterPro IPR003680; KEGG: pae:PA0785 azobenzene reductase, AzoR; PFAM: Flavodoxin-like fold; SPTR: Probable acyl carrier protein phosphodiesterase; PFAM: Flavodoxin-like fold YP_004268651.1 InterPro IPR006626; KEGG: plm:Plim_2976 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3442) YP_004268653.1 InterPro IPR001845; KEGG: rba:RB3521 transcription regulator ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Probable ArsR-family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_004268654.1 InterPro IPR010712; KEGG: psl:Psta_1210 arsenical resistance operon trans-acting repressor ArsD; PFAM: Arsenical resistance operon trans-acting repressor ArsD; SPTR: Arsenical resistance operon trans-acting repressor ArsD; PFAM: Arsenical resistance operon trans-acting repressor ArsD YP_004268655.1 COGs: COG0003 ATPase involved in chromosome partitioning; InterPro IPR003593: IPR003348; KEGG: psl:Psta_1209 arsenite-activated ATPase ArsA; PRIAM: Arsenite-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Arsenite-activated ATPase ArsA; TIGRFAM: ATPase, anion-transporting; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA); TC 3.A.4.1.1 YP_004268656.1 COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: plm:Plim_1896 protein-tyrosine phosphatase, low molecular weight; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin) YP_004268657.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR003593: IPR002078: IPR002197; KEGG: plm:Plim_0197 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, Fis family transcriptional regulator protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004268658.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR006638: IPR007197: IPR010505: IPR013483; KEGG: plm:Plim_3318 molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdopterin cofactor synthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_004268659.1 COGs: COG0836 mannose-1-phosphate guanylyltransferase; InterPro IPR005835: IPR001538; KEGG: psl:Psta_3922 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; mannose-6-phosphate isomerase, type II, C-terminal; PRIAM: mannose-1-phosphate guanylyltransferase; SPTR: mannose-1-phosphate guanylyltransferase; PFAM: nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004268660.1 InterPro IPR011446; KEGG: rpe:RPE_1546 hypothetical protein; PFAM: protein of unknown function DUF1551; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1551) YP_004268661.1 KEGG: hsa:4137 microtubule-associated protein tau; SPTR: RNA polymerase sigma factor YP_004268662.1 KEGG: psl:Psta_0075 hypothetical protein; SPTR: uncharacterized protein YP_004268663.1 COGs: COG1966 carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: rba:RB7220 carbon starvation-induced protein; PFAM: carbon starvation protein CstA; SPTR: carbon starvation-induced protein; PFAM: carbon starvation protein CstA YP_004268665.1 COGs: COG1551 carbon storage regulator (could also regulate swarming and quorum sensing); HAMAP: carbon storage regulator; InterPro IPR003751; KEGG: plm:Plim_0311 carbon storage regulator; PFAM: carbon storage regulator; SPTR: carbon storage regulator homolog; TIGRFAM: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004268666.1 COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492: IPR001029; KEGG: plm:Plim_3359 flagellin domain protein; PFAM: Flagellin, C-terminal helical region; Flagellin, N-terminal; SPTR: Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_004268667.1 KEGG: sml:Smlt1435 hypothetical protein YP_004268668.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterPro IPR000014: IPR001610: IPR003018: IPR003661: IPR 003594: IPR001789: IPR013656: IPR013767; KEGG: scl:sce0929 two-component hybrid sensor and regulator; PFAM: ATPase-like, ATP-binding domain; GAF; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; PAS; Signal transduction response regulator, receiver domain; SPTR: Signal transduction histidine Kinase (STHK) with CheB and CheR activity; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004268669.1 KEGG: hba:Hbal_0541 thiol-disulphide oxidoreductase DCC; SPTR: thiol-disulphide oxidoreductase DCC; PFAM: Vitamin K-dependent gamma-carboxylase YP_004268670.1 KEGG: cpb:Cphamn1_0021 carboxyl-terminal protease; SPTR: serine protease; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004268671.1 KEGG: rba:RB6610 hypothetical protein; SPTR: uncharacterized protein YP_004268672.1 InterPro IPR002559; KEGG: rba:RB3871 transposase; PFAM: transposase, IS4-like; SPTR: Probable transposase; PFAM: transposase DDE domain YP_004268673.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: rba:RB6147 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_004268674.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: rba:RB8123 beta-hydroxyacyl-ACP dehydratase; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Probable beta-hydroxyacyl-ACP dehydratase; PFAM: FabA-like domain YP_004268675.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953; KEGG: rba:RB1308 phytoene dehydrogenase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Probable phytoene dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004268676.1 InterPro IPR010869; KEGG: plm:Plim_1150 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004268677.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR019781: IPR003343: IPR011444; KEGG: plm:Plim_1151 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Bacterial Ig-like, group 2; WD40 repeat, subgroup; SPTR: uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2); WD domain, G-beta repeat; protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004268678.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000014: IPR001932: IPR013656: IPR010822; KEGG: nhl:Nhal_0374 PAS sensor protein; PFAM: sporulation stage II, protein E C-terminal; PAS fold-4; SMART: protein phosphatase 2C-related; PAS; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box YP_004268679.1 KEGG: plm:Plim_0688 hypothetical protein; SPTR: uncharacterized protein YP_004268680.1 KEGG: plm:Plim_0944 hypothetical protein; SPTR: uncharacterized protein YP_004268681.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: plm:Plim_3348 hopanoid biosynthesis associated RND transporter like protein HpnN; SPTR: rRNA methylase; PFAM: MMPL family YP_004268682.1 KEGG: ath:AT2G32590 hypothetical protein; SPTR: Condensin complex subunit 2 YP_004268683.1 KEGG: mdo:100014210 similar to preprocathepsin H; SPTR: uncharacterized protein YP_004268684.1 KEGG: plm:Plim_2645 hypothetical protein; SPTR: uncharacterized protein YP_004268685.1 KEGG: plm:Plim_2646 hypothetical protein; SPTR: uncharacterized protein YP_004268686.1 InterPro IPR006626: IPR001818; KEGG: plm:Plim_0456 hypothetical protein protein; PFAM: peptidase M10, metallopeptidase; SPTR: hypothetical protein; TIGRFAM: hypothetical protein; PFAM: Leishmanolysin YP_004268687.1 InterPro IPR010496; KEGG: psl:Psta_2312 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: multi-domain protein; PFAM: Domain of Unknown Function (DUF1080) YP_004268688.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173: IPR001296; KEGG: ter:Tery_2849 glycosyl transferase; PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; SPTR: glycosyl transferase, family 2; PFAM: glycosyl transferases group 1; glycosyl transferase family 2 YP_004268689.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rsl:RPSI07_1222 glycosyl transferase, family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, family 2; protein; PFAM: glycosyl transferase family 2 YP_004268690.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR003593: IPR001140: IPR003439; KEGG: psl:Psta_3269 ABC transporter; PFAM: ABC transporter-like; ABC transporter transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter protein; PFAM: ABC transporter transmembrane region; ABC transporter YP_004268691.1 KEGG: cin:100182232 similar to predicted protein; SPTR: uncharacterized protein YP_004268692.1 COGs: COG0262 dihydrofolate reductase; KEGG: ctt:CtCNB1_4770 bifunctional deaminase-reductase-like protein; SPTR: Bifunctional deaminase-reductase-like protein; PFAM: RibD C-terminal domain YP_004268693.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddr:Deide_21630 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004268694.1 COGs: COG3224 conserved hypothetical protein; InterPro IPR007138; KEGG: dfe:Dfer_4195 hypothetical protein; PFAM: antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: antibiotic biosynthesis monooxygenase YP_004268695.1 COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: ddr:Deide_2p02260 DinB; PFAM: DinB; SPTR: dinB; PFAM: DinB family YP_004268696.1 COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: ctc:CTC02186 homoserine/homoserine lactone efflux protein; PFAM: lysine exporter (LYSE/YGGA); SPTR: lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator; TIGRFAM: The Resistance to homoserine/threonine (RhtB) Family protein YP_004268697.1 COGs: COG0387 Ca2+/H+ antiporter; InterPro IPR004837; KEGG: app:CAP2UW1_3938 sodium/calcium exchanger membrane region; PFAM: Sodium/calcium exchanger membrane region; SPTR: Sodium/calcium exchanger membrane region; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger; calcium/proton exchanger (cax) YP_004268698.1 COGs: COG0670 integral membrane protein interacts with FtsH; KEGG: rba:RB3430 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family UPF0005 YP_004268699.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: tra:Trad_0699 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_004268700.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: psl:Psta_4052 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004268701.1 InterPro IPR003819; KEGG: eli:ELI_03725 SyrP protein, PFAM: Taurine catabolism dioxygenase TauD/TfdA; SPTR: SyrP-like protein; PFAM: Taurine catabolism dioxygenase TauD, TfdA family YP_004268702.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: nde:NIDE1155 major facilitator superfamily transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004268703.1 InterPro IPR002781; KEGG: hla:Hlac_3036 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Hypothetical membrane protein; PFAM: Sulfite exporter TauE/SafE YP_004268704.1 KEGG: sti:Sthe_1105 microcystin LR degradation protein MlrC-like protein; SPTR: RND membrane fusion protein YP_004268705.1 COGs: COG1970 Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: coc:Coch_1956 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_004268706.1 COGs: COG0657 esterase/lipase; KEGG: psl:Psta_2685 alpha/beta hydrolase; SPTR: alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold YP_004268707.1 COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR000277: IPR006235; KEGG: plm:Plim_4098 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase YP_004268708.1 COGs: COG3216 conserved hypothetical protein; InterPro IPR018639; KEGG: dps:DP0622 hypothetical protein; PFAM: protein of unknown function DUF2062; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2062) YP_004268709.1 KEGG: cfa:607272 similar to keratin associated protein 10-7; SPTR: Keratin-associated protein 10-7 YP_004268710.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pdi:BDI_2321 arylsulfatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Sulfatase family protein; PFAM: Sulfatase; alpha/beta hydrolase fold YP_004268711.1 COGs: COG1360 flagellar motor protein; KEGG: psl:Psta_4351 OmpA/MotB domain protein; SPTR: uncharacterized protein; PFAM: OmpA family YP_004268712.1 KEGG: lma:L2743.12 hypothetical protein; SPTR: uncharacterized protein L779.04 YP_004268713.1 COGs: COG1200 RecG-like helicase; InterPro IPR014001: IPR001650: IPR004365: IPR011545; KEGG: plm:Plim_0908 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG YP_004268714.1 InterPro IPR001478; KEGG: rba:RB3023 protease EcfE; SMART: PDZ/DHR/GLGF; SPTR: Similar to protease ecfE YP_004268715.1 COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterPro IPR012319: IPR015886: IPR010663: IPR000191; KEGG: plm:Plim_2633 DNA-formamidopyrimidine glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: Formamidopyrimidine-DNA glycosylase; TIGRFAM: DNA glycosylase/AP lyase; manually curated; PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_004268716.1 InterPro IPR011487; KEGG: plm:Plim_2634 hypothetical protein; PFAM: protein of unknown function DUF1598; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1598) YP_004268717.1 InterPro IPR008462: IPR010279; KEGG: plm:Plim_0418 protein of unknown function DUF883 ElaB; PFAM: CsbD-like; protein of unknown function DUF883, ElaB; SPTR: uncharacterized protein; PFAM: CsbD-like YP_004268718.1 KEGG: tgr:Tgr7_2590 hypothetical protein; SPTR: uncharacterized protein YP_004268719.1 KEGG: plm:Plim_0417 hypothetical protein; SPTR: uncharacterized protein YP_004268720.1 KEGG: sjp:SJA_C2-02580 naringenin-chalcone synthase; SPTR: naringenin-chalcone synthase YP_004268721.1 KEGG: plm:Plim_0415 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1469) YP_004268722.1 KEGG: plm:Plim_0414 hypothetical protein; SPTR: uncharacterized protein YP_004268723.1 InterPro IPR010496; KEGG: plm:Plim_2940 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004268724.1 KEGG: plm:Plim_0831 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sulfotransferase domain YP_004268725.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bfa:Bfae_28180 arylsulfatase A family protein; PFAM: Sulfatase; SPTR: Arylsulfatase A family protein; PFAM: Sulfatase YP_004268726.1 COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR006638: IPR007197: IPR010722: IPR002684; KEGG: plm:Plim_1928 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: Biotin synthase; PFAM: radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_004268727.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; InterPro IPR013154: IPR013149: IPR004627; KEGG: sus:acid_0475 L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, zinc-binding; PRIAM: L-threonine 3-dehydrogenase; SPTR: L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase YP_004268728.1 InterPro IPR012902; KEGG: plm:Plim_1856 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268729.1 KEGG: rba:RB11652 signal peptide; SPTR: uncharacterized protein YP_004268730.1 KEGG: bbe:BBR47_03130 hypothetical protein; SPTR: uncharacterized protein YP_004268731.1 InterPro IPR003953; KEGG: phe:Phep_0966 hypothetical protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Probable xanthan lyase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004268732.1 KEGG: rba:RB249 transposase; SPTR: Probable transposase YP_004268734.1 KEGG: cyt:cce_3738 phosphorylase kinase; SPTR: uncharacterized protein; PFAM: glycosyl hydrolases family 15 YP_004268735.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_2718 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Probable oxidoreductase; PFAM: short chain dehydrogenase YP_004268736.1 COGs: COG0174 glutamine synthetase; InterPro IPR008147: IPR008146: IPR004809; KEGG: dal:Dalk_5100 glutamine synthetase; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp; SPTR: glutamine synthetase; TIGRFAM: glutamine synthetase type I; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase YP_004268737.1 KEGG: plm:Plim_0210 hypothetical protein; SPTR: uncharacterized protein; PFAM: PilZ domain YP_004268738.1 InterPro IPR000119; KEGG: plm:Plim_0054 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU, ; PFAM: Bacterial DNA-binding protein YP_004268739.1 COGs: COG1551 carbon storage regulator (could also regulate swarming and quorum sensing); HAMAP: carbon storage regulator; InterPro IPR003751; KEGG: rba:RB8149 carbon storage regulator; PFAM: carbon storage regulator; SPTR: Probable carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004268740.1 KEGG: plm:Plim_3439 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1207) YP_004268741.1 KEGG: plm:Plim_3564 hypothetical protein; SPTR: uncharacterized protein; PFAM: glycosyl transferases group 1 YP_004268742.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: plm:Plim_3563 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004268743.1 KEGG: plm:Plim_3562 hypothetical protein; SPTR: uncharacterized protein YP_004268744.1 KEGG: plm:Plim_3561 hypothetical protein; SPTR: uncharacterized protein YP_004268745.1 KEGG: plm:Plim_3560 hypothetical protein; SPTR: uncharacterized protein YP_004268746.1 KEGG: plm:Plim_3557 hypothetical protein; SPTR: uncharacterized protein YP_004268747.1 KEGG: plm:Plim_3556 hypothetical protein; SPTR: uncharacterized protein YP_004268748.1 KEGG: plm:Plim_3555 hypothetical protein; SPTR: uncharacterized protein YP_004268749.1 KEGG: plm:Plim_3554 hypothetical protein; SPTR: uncharacterized protein YP_004268750.1 KEGG: csa:Csal_3095 GrpE protein; SPTR: Midasin YP_004268751.1 KEGG: plm:Plim_3552 hypothetical protein; SPTR: uncharacterized protein YP_004268752.1 KEGG: plm:Plim_3551 hypothetical protein; SPTR: uncharacterized protein YP_004268753.1 KEGG: plm:Plim_3550 hypothetical protein; SPTR: uncharacterized protein YP_004268754.1 KEGG: rpi:Rpic_1940 protein of unknown function DUF6 transmembrane; SPTR: uncharacterized protein YP_004268755.1 KEGG: bgf:BC1003_3591 AsnC family transcriptional regulator; SPTR: AsnC family transcriptional regulator YP_004268756.1 KEGG: lif:LinJ30.0230 hypothetical protein; SPTR: uncharacterized protein YP_004268757.1 KEGG: lbz:LbrM21_V2.1060 hypothetical protein; SPTR: uncharacterized protein YP_004268758.1 KEGG: hoh:Hoch_0964 hypothetical protein; SPTR: uncharacterized protein YP_004268759.1 KEGG: mau:Micau_0354 hypothetical protein; SPTR: uncharacterized protein YP_004268760.1 KEGG: pan:PODANSg2347 hypothetical protein; SPTR: Predicted CDS Pa_5_4680 YP_004268761.1 KEGG: cag:Cagg_0005 hypothetical protein; SPTR: uncharacterized protein YP_004268762.1 KEGG: syx:SynWH7803_1709 two-component system response regulator; SPTR: Two component transcriptional regulator, winged helix family protein YP_004268763.1 KEGG: ncr:NCU03648 similar to glutaminase A; SPTR: uncharacterized protein ycf2 YP_004268764.1 KEGG: mgr:MGG_04309 hypothetical protein; SPTR: Predicted protein YP_004268765.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: psl:Psta_4451 D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004268766.1 KEGG: ath:AT5G63650 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5); kinase; SPTR: serine/threonine-protein kinase SRK2H YP_004268767.1 KEGG: pfl:PFL_2817 hypothetical protein; SPTR: uncharacterized protein YP_004268768.1 KEGG: pmo:Pmob_1498 hypothetical protein; SPTR: uncharacterized protein YP_004268769.1 KEGG: mgr:MGG_04923 hypothetical protein; SPTR: uncharacterized protein YP_004268770.1 KEGG: mgm:Mmc1_1825 hypothetical protein; SPTR: uncharacterized protein YP_004268771.1 KEGG: cph:Cpha266_1499 hypothetical protein; SPTR: uncharacterized protein YP_004268772.1 KEGG: dar:Daro_1664 hypothetical protein; SPTR: uncharacterized protein YP_004268773.1 KEGG: rmr:Rmar_2898 hypothetical protein; SPTR: uncharacterized protein YP_004268774.1 COGs: COG2865 transcriptional regulator protein; KEGG: pla:Plav_3556 transcriptional regulator; SPTR: transcriptional regulator YP_004268775.1 KEGG: slp:Slip_1272 hypothetical protein; SPTR: uncharacterized protein YP_004268776.1 InterPro IPR013973; KEGG: pth:PTH_0717 hypothetical protein; PFAM: PglZ domain; SPTR: uncharacterized protein; PFAM: PglZ domain YP_004268777.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: ace:Acel_0816 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004268778.1 InterPro IPR002941; KEGG: ace:Acel_0814 hypothetical protein; PFAM: DNA methylase N-4/N-6; SPTR: uncharacterized protein; PFAM: DNA methylase YP_004268779.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase superfamily I member; KEGG: nha:Nham_3707 ATPase; PRIAM: exodeoxyribonuclease V; SPTR: ATPase; PFAM: Viral (Superfamily 1) RNA helicase YP_004268780.1 KEGG: slp:Slip_1275 hypothetical protein; SPTR: uncharacterized protein YP_004268781.1 KEGG: slp:Slip_1276 hypothetical protein; SPTR: uncharacterized protein YP_004268782.1 InterPro IPR001387; KEGG: rba:RB7754 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004268783.1 KEGG: cyc:PCC7424_1463 protein of unknown function DUF955; SPTR: uncharacterized protein YP_004268784.1 KEGG: kol:Kole_1967 hypothetical protein; SPTR: uncharacterized protein YP_004268785.1 KEGG: kpn:KPN_02963 hypothetical protein; SPTR: uncharacterized protein YP_004268786.1 KEGG: mmu:277978 exocyst complex component 3-like; SPTR: Gp6 YP_004268787.1 COGs: COG4227 antirestriction protein; InterPro IPR013610; KEGG: pbr:PB2503_00497 antirestriction protein; PFAM: Domain of unknown function DUF1738; SPTR: antirestriction protein; PFAM: Domain of unknown function (DUF1738) YP_004268788.1 KEGG: mmu:72469 phospholipase C, delta 3; SPTR: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-3 YP_004268789.1 KEGG: pan:PODANSg4835 hypothetical protein; SPTR: Predicted CDS Pa_7_2190 YP_004268790.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR011704: IPR008823; KEGG: kol:Kole_0208 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-5; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus YP_004268791.1 KEGG: ame:409598 similar to pawn CG11101-PA; SPTR: uncharacterized protein YP_004268792.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: cpo:COPRO5265_0041 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004268793.1 KEGG: tmz:Tmz1t_0013 hypothetical protein YP_004268795.1 KEGG: rba:RB4919 signal peptide; SPTR: uncharacterized protein; PFAM: DsrE/DsrF-like family YP_004268796.1 KEGG: osa:4327735 hypothetical protein; SPTR: endonuclease/exonuclease/phosphatase family protein-like YP_004268797.1 KEGG: sme:SMc01723 hypothetical protein YP_004268798.1 KEGG: ara:Arad_0724 short chain dehydrogenase; SPTR: Short-chain dehydrogenase protein YP_004268799.1 KEGG: ctt:CtCNB1_3726 hypothetical protein; SPTR: uncharacterized protein YP_004268800.1 KEGG: lif:LinJ26.0350 hypothetical protein YP_004268801.1 KEGG: sli:Slin_2558 acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004268802.1 KEGG: mpt:Mpe_B0286 hypothetical protein; SPTR: uncharacterized protein YP_004268803.1 InterPro IPR006640; KEGG: tau:Tola_1254 protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; SPTR: uncharacterized protein; PFAM: SprT-like family YP_004268804.1 KEGG: gga:424994 leucine rich repeat containing 31; SPTR: chromosome undetermined scaffold_37, whole genome shotgun sequence YP_004268805.1 KEGG: nwi:Nwi_0077 hypothetical protein; SPTR: uncharacterized protein YP_004268806.1 InterPro IPR000357; KEGG: mba:Mbar_A3019 phycocyanin alpha-subunit; PFAM: HEAT; SPTR: uncharacterized protein; PFAM: HEAT repeat YP_004268807.1 KEGG: pcs:Pc13g02790 Pc13g02790; SPTR: Pc13g02790 protein YP_004268808.1 KEGG: gem:GM21_1264 hypothetical protein; SPTR: uncharacterized protein YP_004268809.1 InterPro IPR001478; KEGG: naz:Aazo_0306 HtrA2 peptidase; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: HtrA2 peptidase; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004268810.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: syf:Synpcc7942_1923 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004268811.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442: IPR012680; KEGG: rba:RB5876 serine/threonine-protein kinase; PFAM: serine/threonine-protein kinase-like domain; Laminin G, subdomain 2; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase; PFAM: protein kinase domain YP_004268812.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119: IPR011109; KEGG: mlo:mlr9562 recombinase-like protein; PFAM: Resolvase, N-terminal; Recombinase; SPTR: DNA integration/recombination protein; PFAM: Recombinase; Resolvase, N terminal domain YP_004268813.1 KEGG: plm:Plim_3549 hypothetical protein; SPTR: uncharacterized protein YP_004268814.1 KEGG: plm:Plim_3548 hypothetical protein; SPTR: uncharacterized protein YP_004268815.1 KEGG: plm:Plim_3547 hypothetical protein; SPTR: uncharacterized protein YP_004268816.1 COGs: COG5511 bacteriophage capsid protein; InterPro IPR006429; KEGG: plm:Plim_3545 portal protein lambda; PFAM: Phage portal protein, lambda; SPTR: Portal protein lambda; PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family YP_004268817.1 KEGG: plm:Plim_3612 phage terminase-like protein protein large subunit-like protein; SPTR: Phage terminase-like protein protein large subunit-like protein; PFAM: Phage terminase YP_004268818.1 KEGG: plm:Plim_3611 hypothetical protein; SPTR: uncharacterized protein YP_004268819.1 COGs: COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain; InterPro IPR003593: IPR003439; KEGG: plm:Plim_3609 ATPase AAA; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA; PFAM: ABC transporter YP_004268820.1 InterPro IPR003115; KEGG: plm:Plim_3718 ParB domain protein nuclease; SMART: ParB-like nuclease; SPTR: ParB domain protein nuclease; PFAM: ParB-like nuclease domain YP_004268821.1 KEGG: plm:Plim_3717 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sigma-70, region 4 YP_004268822.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594: IPR007901; KEGG: plm:Plim_3716 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: Molybdopterin biosynthesis protein MoeB; PFAM: MoeZ/MoeB domain; ThiF family YP_004268823.1 KEGG: plm:Plim_2486 hypothetical protein; SPTR: uncharacterized protein YP_004268824.1 KEGG: lma:LmjF05.0890 hypothetical protein; SPTR: uncharacterized protein YP_004268825.1 COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: psl:Psta_4406 ATP synthase F0 A subunit; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_004268826.1 HAMAP: ATPase, F0 complex, subunit C; InterPro IPR002379: IPR000454; KEGG: fbc:FB2170_05625 hypothetical protein; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; PFAM: ATP synthase subunit C YP_004268827.1 COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR002146: IPR005864; KEGG: plm:Plim_0172 ATP synthase F0 subunit beta; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_004268828.1 COGs: COG0712 F0F1-type ATP synthase subunit delta (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/subunit delta; InterPro IPR000711; KEGG: plm:Plim_0173 ATP synthase F1 subunit delta; PFAM: ATPase, F1 complex, OSCP/subunit delta; SPTR: Probable ATP synthase delta chain; TIGRFAM: ATPase, F1 complex, OSCP/subunit delta; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 subunit delta YP_004268829.1 COGs: COG0056 F0F1-type ATP synthase subunit alpha; HAMAP: ATPase, F1 complex, subunit alpha; InterPro IPR004100: IPR000194: IPR000793: IPR005294; KEGG: plm:Plim_0174 ATP synthase F1 subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; ATPase, F1/V1/A1 complex, alpha/subunit beta, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, subunit alpha; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: proton translocating ATP synthase, F1 subunit alpha YP_004268830.1 COGs: COG0224 F0F1-type ATP synthase subunit gamma; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: plm:Plim_0175 ATP synthase F1 subunit gamma; PFAM: ATPase, F1 complex, subunit gamma; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, subunit gamma; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 subunit gamma YP_004268831.1 COGs: COG0055 F0F1-type ATP synthase subunit beta; HAMAP: ATPase, F1 complex subunit beta; InterPro IPR003593: IPR004100: IPR000194: IPR000793: IPR 005722; KEGG: plm:Plim_0176 ATP synthase F1 subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; ATPase, F1/V1/A1 complex, alpha/subunit beta, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: F0F1 ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 subunit beta YP_004268832.1 COGs: COG0355 F0F1-type ATP synthase subunit epsilon (mitochondrial subunit delta); HAMAP: ATPase, F1 complex, delta/epsilon subunit; InterPro IPR020546: IPR001469; KEGG: plm:Plim_0177 ATP synthase F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon, N-terminal; SPTR: ATP synthase epsilon chain; TIGRFAM: ATPase, F1 complex, delta/subunit epsilon; PFAM: ATP synthase, delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 subunit epsilon (delta in mitochondria) YP_004268833.1 KEGG: scl:sce7736 secreted protein; SPTR: uncharacterized protein YP_004268834.1 InterPro IPR001387; KEGG: vfm:VFMJ11_A0788 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: transcriptional regulator,; PFAM: Helix-turn-helix YP_004268835.1 KEGG: hha:Hhal_0385 TonB-dependent receptor, plug; SPTR: uncharacterized protein YP_004268836.1 KEGG: syn:sll1861 transposase; SPTR: transposase YP_004268837.1 KEGG: plm:Plim_2781 hypothetical protein; SPTR: uncharacterized protein YP_004268838.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR013222: IPR010496: IPR013428: IPR013427; KEGG: psl:Psta_2956 membrane-bound dehydrogenase domain protein; PFAM: protein of unknown function DUF1080; glycosyl hydrolase family 98, carbohydrate-binding module; SMART: glycosyl hydrolase family 98, carbohydrate-binding module; SPTR: uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: NPCBM/NEW2 domain; cytochrome C; Trehalose utilisation; Domain of Unknown Function (DUF1080); TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004268839.1 KEGG: plm:Plim_2191 hypothetical protein; SPTR: uncharacterized protein YP_004268840.1 COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: plm:Plim_0834 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain YP_004268841.1 KEGG: sus:acid_3736 hypothetical protein; SPTR: peptidase M56 BlaR1 YP_004268842.1 KEGG: psl:Psta_3821 hypothetical protein; SPTR: uncharacterized protein YP_004268843.1 KEGG: bpf:BpOF4_05410 prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase YP_004268844.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004268845.1 KEGG: plm:Plim_3162 hypothetical protein; SPTR: uncharacterized protein YP_004268846.1 KEGG: eat:EAT1b_0026 hypothetical protein; SPTR: uncharacterized protein YP_004268847.1 InterPro IPR010869; KEGG: psl:Psta_0622 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004268848.1 COGs: COG1432 conserved hypothetical protein; KEGG: fsu:Fisuc_1570 protein of unknown function DUF88; SPTR: Conserved domain protein; PFAM: protein of unknown function DUF88; TIGRFAM: conserved hypothetical protein TIGR00288 YP_004268849.1 KEGG: azc:AZC_3508 hypothetical protein; SPTR: uncharacterized protein YP_004268850.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268851.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268852.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: plm:Plim_0158 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_004268853.1 COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR002376: IPR005793: IPR005794; KEGG: plm:Plim_2729 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004268854.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: plm:Plim_0246 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: peptide deformylase; SPTR: peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase YP_004268855.1 COGs: COG0423 glycyl-tRNA synthetase (class II); InterPro IPR002315: IPR002314: IPR004154; KEGG: plm:Plim_1654 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding; SPTR: glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase, alpha2 dimer; PFAM: anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_004268856.1 KEGG: cre:CHLREDRAFT_145916 hypothetical protein; SPTR: Predicted protein YP_004268857.1 COGs: COG0763 lipid A disaccharide synthetase; InterPro IPR003835; KEGG: plm:Plim_0943 lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; PRIAM: lipid-A-disaccharide synthase; SPTR: lipid-A-disaccharide synthetase; TIGRFAM: glycosyl transferase, family 19; PFAM: lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_004268858.1 COGs: COG0648 endonuclease IV; HAMAP: endodeoxyribonuclease IV; InterPro IPR001719: IPR012307; KEGG: plm:Plim_0383 apurinic endonuclease Apn1; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: deoxyribonuclease IV (phage-T(4)-induced); SMART: endodeoxyribonuclease IV; SPTR: Probable endonuclease 4; TIGRFAM: endodeoxyribonuclease IV; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_004268859.1 KEGG: nwa:Nwat_0100 hypothetical protein; SPTR: uncharacterized protein YP_004268860.1 KEGG: noc:Noc_0116 hypothetical protein; SPTR: uncharacterized protein YP_004268861.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_4161 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004268862.1 InterPro IPR018391; KEGG: psl:Psta_4175 pyrrolo-quinoline quinone; SPTR: uncharacterized protein YP_004268863.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: scl:sce9161 protein kinase; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: protein kinase; PFAM: protein kinase domain YP_004268864.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268865.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004268866.1 InterPro IPR013428: IPR013427; KEGG: psl:Psta_0498 membrane-bound dehydrogenase domain protein; SPTR: membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004268867.1 COGs: COG0017 aspartyl/asparaginyl-tRNA synthetase; HAMAP: asparaginyl-tRNA synthetase; InterPro IPR004522: IPR004365: IPR004364; KEGG: plm:Plim_3465 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase, class IIb; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_004268868.1 KEGG: ddi:DDB_G0283595 patatin family protein; SPTR: patatin family protein YP_004268869.1 KEGG: stp:Strop_1524 ABC transporter; SPTR: ABC transporter related YP_004268870.1 KEGG: tca:100142413 similar to CG14803 CG14803-PA; SPTR: uncharacterized protein YP_004268871.1 KEGG: cai:Caci_7276 benzoate transporter; SPTR: uncharacterized protein YP_004268872.1 KEGG: psl:Psta_2799 hypothetical protein; SPTR: uncharacterized protein YP_004268873.1 KEGG: cfl:Cfla_2463 PDZ/DHR/GLGF domain protein; SPTR: PDZ/DHR/GLGF domain protein YP_004268874.1 KEGG: nfa:nfa52250 protease; SPTR: protease YP_004268875.1 KEGG: ang:An16g01450 hypothetical protein; SPTR: Cofactor: FAD. YP_004268876.1 KEGG: sfr:Sfri_3362 protease Do; SPTR: peptidase Do. serine peptidase. MEROPS family S01B YP_004268877.1 InterPro IPR001478; KEGG: plm:Plim_0166 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004268878.1 KEGG: psl:Psta_2536 PA14 domain protein; SPTR: large multi-functional protein; PFAM: PA14 domain YP_004268879.1 KEGG: psl:Psta_2536 PA14 domain protein; SPTR: large multi-functional protein; PFAM: cytochrome C YP_004268880.1 KEGG: dvi:Dvir_GJ10689 GJ10689 gene product from transcript GJ10689-RA YP_004268881.1 COGs: COG1879 ABC-type sugar transporter periplasmic component; KEGG: plm:Plim_0778 ribose ABC transporter periplasmic-binding protein; SPTR: ABC transporter sugar-binding protein YP_004268882.1 COGs: COG1129 ABC-type sugar transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: scl:sce4029 ribose ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Sugar (D-ribose) ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004268883.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413: IPR006075: IPR018027; KEGG: plm:Plim_2282 glutamyl-tRNA(Gln) amidotransferase subunit beta; PFAM: glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SPTR: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase subunit beta; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit beta YP_004268884.1 COGs: COG0171 NAD synthase; InterPro IPR003694: IPR003010; KEGG: plm:Plim_3277 NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD synthase; carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_004268885.1 InterPro IPR001000; KEGG: plm:Plim_3847 glycoside hydrolase family 10; PFAM: glycoside hydrolase, family 10; SPTR: glycoside hydrolase family 10; PFAM: glycosyl hydrolase family 10 YP_004268886.1 COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: psl:Psta_4309 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: SAICAR synthetase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004268887.1 KEGG: plm:Plim_4043 hypothetical protein; SPTR: uncharacterized protein YP_004268888.1 KEGG: plm:Plim_4045 hypothetical protein; SPTR: metal-dependent hydrolase YP_004268889.1 COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: plm:Plim_4077 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB; PFAM: OmpA family YP_004268890.1 KEGG: plm:Plim_0302 hypothetical protein; SPTR: uncharacterized protein YP_004268891.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: psl:Psta_3400 peptidase M28; PFAM: peptidase M28; SPTR: PDZ domain (Also known as DHR or GLGF); PFAM: peptidase family M28 YP_004268892.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: caa:Caka_0229 sulfatase; PFAM: Sulfatase; SPTR: Choline sulfatase; PFAM: Sulfatase YP_004268893.1 COGs: COG1267 phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: dal:Dalk_2947 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A; SPTR: phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A YP_004268894.1 KEGG: plm:Plim_1169 hypothetical protein; SPTR: uncharacterized protein YP_004268895.1 KEGG: plm:Plim_1170 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004268896.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004268897.1 KEGG: cqu:CpipJ_CPIJ005815 heparin sulfate O-sulfotransferase; SPTR: Heparin sulfate O-sulfotransferase YP_004268898.1 COGs: COG1376 conserved hypothetical protein; InterPro IPR018392: IPR005490: IPR002482; KEGG: plm:Plim_0123 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: uncharacterized protein; PFAM: LysM domain; L,D-transpeptidase catalytic domain YP_004268899.1 KEGG: mmu:241263 G protein-coupled receptor 158; SPTR: uncharacterized protein YP_004268900.1 KEGG: plm:Plim_2000 hypothetical protein; SPTR: uncharacterized protein YP_004268901.1 InterPro IPR013097; KEGG: psl:Psta_3643 stress responsive alpha-beta barrel domain protein; PFAM: stress responsive alpha-beta barrel; SPTR: uncharacterized protein; PFAM: stress responsive A/B Barrel Domain YP_004268902.1 KEGG: rba:RB5876 serine/threonine-protein kinase; SPTR: Probable beta-galactosidase YP_004268903.1 COGs: COG0623 enoyl-(acyl-carrier-protein); KEGG: plm:Plim_3893 short-chain dehydrogenase/reductase SDR; PRIAM: enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short chain dehydrogenase YP_004268904.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: plm:Plim_1770 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: Ureidoglycolate lyase; SPTR: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_004268905.1 COGs: COG0602 organic radical activating protein; InterPro IPR007197; KEGG: psl:Psta_2468 radical SAM protein; PFAM: radical SAM; SPTR: uncharacterized protein; PFAM: radical SAM superfamily YP_004268906.1 KEGG: psl:Psta_3657 hypothetical protein; SPTR: uncharacterized protein YP_004268907.1 KEGG: sus:acid_1394 hypothetical protein; SPTR: uncharacterized protein YP_004268908.1 COGs: COG1691 NCAIR mutase (PurE)-related protein; InterPro IPR000031; KEGG: plm:Plim_0061 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: uncharacterized protein; PFAM: AIR carboxylase YP_004268909.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: plm:Plim_0702 aldose 1-epimerase; PFAM: aldose 1-epimerase; SPTR: aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004268910.1 KEGG: plm:Plim_3665 hypothetical protein; SPTR: uncharacterized protein YP_004268911.1 KEGG: lga:LGAS_0922 hypothetical protein; SPTR: uncharacterized protein YP_004268912.1 KEGG: rba:RB13097 signal peptide; SPTR: uncharacterized protein; PFAM: MerC mercury resistance protein YP_004268913.1 InterPro IPR000182; KEGG: rba:RB10940 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: acetyltransferase (GNAT) family YP_004268914.1 COGs: COG0024 methionine aminopeptidase; InterPro IPR002467: IPR000994; KEGG: plm:Plim_1766 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: methionine aminopeptidase; TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004268915.1 InterPro IPR018391; KEGG: plm:Plim_2733 hypothetical protein; SPTR: uncharacterized protein YP_004268916.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822: IPR003018: IPR001932; KEGG: plm:Plim_3158 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-related; GAF; SPTR: stage II sporulation E family protein; PFAM: stage II sporulation protein E (SpoIIE) YP_004268917.1 KEGG: dpe:Dper_GL15219 GL15219 gene product from transcript GL15219-RA; SPTR: GL15219 YP_004268918.1 KEGG: ote:Oter_4538 hypothetical protein; SPTR: uncharacterized protein; PFAM: Trehalose utilisation YP_004268919.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: plm:Plim_2943 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SMART: pyrrolo-quinoline quinone beta-propeller repeat; SPTR: uncharacterized protein; PFAM: PQQ enzyme repeat YP_004268920.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1677 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase related protein; PFAM: PQQ enzyme repeat YP_004268921.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127; KEGG: mca:MCA2174 adhesion lipoprotein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Adhesion lipoprotein; PFAM: Periplasmic solute binding protein family YP_004268922.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: psl:Psta_2581 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004268923.1 KEGG: fal:FRAAL6432 hypothetical protein; SPTR: HD-GYP domain (HD superfamily hydrolase) YP_004268924.1 COGs: COG1045 serine acetyltransferase; InterPro IPR001451; KEGG: plm:Plim_1307 serine O-acetyltransferase; PRIAM: serine O-acetyltransferase; SPTR: serine acetyltransferase, plasmid; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase YP_004268925.1 COGs: COG3746 phosphate-selective porin; InterPro IPR010870; KEGG: rba:RB3826 porin outer membrane protein; PFAM: phosphate-selective porin O/P; SPTR: Porin outer membrane protein; PFAM: phosphate-selective porin O and P YP_004268926.1 KEGG: rba:RB7151 hypothetical protein; SPTR: uncharacterized protein YP_004268927.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ttr:Tter_0164 ROK family protein; PFAM: ROK; PRIAM: Fructokinase; SPTR: ROK family protein; PFAM: ROK family YP_004268928.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: plm:Plim_3649 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 2 YP_004268929.1 InterPro IPR003658: IPR002645; KEGG: plm:Plim_0153 anti-anti-sigma factor; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: uncharacterized protein; TIGRFAM: anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004268930.1 KEGG: min:Minf_0262 glucose-6-phosphate 1-dehydrogenase; SPTR: Possible serine/threonine protein kinase PknJ YP_004268931.1 COGs: COG2035 membrane protein; InterPro IPR007163; KEGG: rba:RB7433 hypothetical protein; PFAM: protein of unknown function DUF368; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF368) YP_004268933.1 COGs: COG1943 transposase and inactivated derivatives; KEGG: plm:Plim_0352 hypothetical protein; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004268934.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR003675; KEGG: plm:Plim_3144 abortive infection protein; PFAM: hypothetical protein; SPTR: Probable sodium extrusion protein NatB; PFAM: CAAX amino terminal protease family YP_004268935.1 COGs: COG4555 ABC-type Na+ transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_3143 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter (ATP-binding protein)- sodium extrusion ABC transporter; PFAM: ABC transporter YP_004268936.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR011282: IPR004839; KEGG: plm:Plim_2077 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase YP_004268937.1 KEGG: rrs:RoseRS_0469 polysaccharide biosynthesis protein; SPTR: EPS I polysaccharide export inner membrane protein epsE YP_004268938.1 KEGG: eli:ELI_12210 hypothetical protein; SPTR: uncharacterized protein YP_004268939.1 SPTR: Midasin YP_004268940.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: bcb:BCB4264_A5392 glycosyltransferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyltransferase; PFAM: glycosyl transferases group 1 YP_004268941.1 COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: mem:Memar_0201 methyltransferase type 12; PFAM: methyltransferase type 12; SPTR: methyltransferase type 12; PFAM: methyltransferase domain YP_004268942.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: gca:Galf_2837 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004268943.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: afw:Anae109_1822 glycosyl transferase family protein; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004268944.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dvm:DvMF_2695 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004268945.1 COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368: IPR001509; KEGG: ppd:Ppro_3405 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_004268946.1 KEGG: plm:Plim_3691 hypothetical protein; SPTR: uncharacterized protein YP_004268947.1 COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR001406: IPR020097; KEGG: plm:Plim_0841 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004268948.1 KEGG: ypz:YPZ3_pMT0050 hypothetical protein; SPTR: uncharacterized protein YP_004268949.1 KEGG: mcc:716176 POM121 membrane glycoprotein; SPTR: Predicted protein YP_004268950.1 KEGG: dwi:Dwil_GK16173 GK16173 gene product from transcript GK16173-RA; SPTR: GK16173 YP_004268951.1 KEGG: mar:MAE_03610 hypothetical protein; SPTR: Tetratricopeptide repeat protein YP_004268952.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: syp:SYNPCC7002_A2469 NADPH-dependent FMN reductase family protein; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase family protein; PFAM: NADPH-dependent FMN reductase YP_004268953.1 InterPro IPR012307; KEGG: plm:Plim_3626 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel YP_004268954.1 KEGG: hoh:Hoch_3914 PKD domain containing protein; SPTR: PKD domain containing protein YP_004268955.1 COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR002304: IPR004495: IPR015413: IPR002547; KEGG: rba:RB5543 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia subunit beta, C-terminal; PFAM: anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004268956.1 COGs: COG0076 glutamate decarboxylase and related PLP-dependent protein; InterPro IPR010107: IPR002129; KEGG: dsa:Desal_3551 glutamate decarboxylase; PFAM: pyridoxal phosphate-dependent decarboxylase; PRIAM: glutamate decarboxylase; SPTR: glutamate decarboxylase; TIGRFAM: glutamate decarboxylase; PFAM: pyridoxal-dependent decarboxylase conserved domain; TIGRFAM: glutamate decarboxylase YP_004268957.1 InterPro IPR011465; KEGG: plm:Plim_2255 protein of unknown function DUF1571; PFAM: protein of unknown function DUF1571; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1571) YP_004268958.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR007055: IPR006685; KEGG: rba:RB4461 hypothetical protein; PFAM: Mechanosensitive ion channel MscS; transport-associated; SPTR: uncharacterized protein; PFAM: Mechanosensitive ion channel; phospholipid-binding domain YP_004268959.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: plm:Plim_2235 CBS domain containing protein; PFAM: cystathionine beta-synthase, core; protein of unknown function DUF21; transporter-associated domain; SMART: cystathionine beta-synthase, core; SPTR: CBS domain containing protein; PFAM: CBS domain; Domain of unknown function DUF21; transporter associated domain YP_004268960.1 KEGG: act:ACLA_028100 hypothetical protein; SPTR: uncharacterized protein YP_004268961.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: plm:Plim_3338 endopeptidase Clp; PFAM: peptidase S14, ClpP; PRIAM: endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; TIGRFAM: peptidase S14, ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP YP_004268962.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: plm:Plim_3337 endopeptidase Clp; PFAM: peptidase S14, ClpP; PRIAM: endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP YP_004268963.1 InterPro IPR000223: IPR019759; KEGG: plm:Plim_1125 peptidase S24 and S26 domain protein; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: Probable signal peptidase I; TIGRFAM: peptidase S26A, signal peptidase I; PFAM: peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004268964.1 KEGG: geo:Geob_2160 ATPase AAA; SPTR: ATPase AAA YP_004268965.1 KEGG: plm:Plim_0727 hypothetical protein; SPTR: uncharacterized protein YP_004268966.1 KEGG: plm:Plim_0726 hypothetical protein; SPTR: uncharacterized protein YP_004268967.1 COGs: COG1381 recombinational DNA repair protein (RecF pathway); HAMAP: DNA repair protein recO; InterPro IPR003717; KEGG: plm:Plim_0725 DNA repair protein RecO; PFAM: recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: recombination protein O, RecO; PFAM: recombination protein O C terminal; recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_004268968.1 KEGG: plm:Plim_3407 hypothetical protein; SPTR: uncharacterized protein YP_004268969.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR006371: IPR000537; KEGG: plm:Plim_3757 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase related; PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase YP_004268970.1 COGs: COG1060 thiamine biosynthesis protein ThiH; InterPro IPR020050: IPR007197; KEGG: plm:Plim_0097 radical SAM protein; PFAM: radical SAM; SPTR: radical SAM protein; TIGRFAM: menaquinone biosynthesis protein; FO synthase, subunit 2; PFAM: radical SAM superfamily; TIGRFAM: menaquinone biosynthesis protein, SCO4494 family; radical SAM protein, CofH subfamily YP_004268971.1 KEGG: dya:Dyak_GE17167 GE17167 gene product from transcript GE17167-RA; SPTR: GE17167 YP_004268972.1 InterPro IPR004360; KEGG: plm:Plim_0096 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004268973.1 SPTR: uncharacterized protein YP_004268974.1 COGs: COG0165 argininosuccinate lyase; HAMAP: argininosuccinate lyase; InterPro IPR009049: IPR000362; KEGG: plm:Plim_1940 argininosuccinate lyase; PFAM: fumarate lyase; PRIAM: argininosuccinate lyase; SPTR: argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_004268975.1 KEGG: plm:Plim_3329 hypothetical protein; SPTR: uncharacterized protein YP_004268976.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004268977.1 KEGG: lbc:LACBIDRAFT_330281 hypothetical protein; SPTR: uncharacterized protein YP_004268978.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: plm:Plim_3136 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; PRIAM: undecaprenyl-phosphate galactose phosphotransferase; SPTR: Sugar transferase; PFAM: Bacterial sugar transferase YP_004268979.1 KEGG: rca:Rcas_2471 hypothetical protein; SPTR: uncharacterized protein YP_004268980.1 InterPro IPR013216; KEGG: drm:Dred_1254 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: uncharacterized protein; PFAM: methyltransferase domain YP_004268981.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: rrs:RoseRS_4447 glycosyl transferase family protein; PFAM: glycosyl transferase, family 2; SPTR: glycosyltransferase, group 2 family protein; PFAM: glycosyl transferase family 2 YP_004268982.1 InterPro IPR001173; KEGG: rpf:Rpic12D_3808 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004268983.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: gem:GM21_3762 OsmC family protein; PFAM: peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; PFAM: OsmC-like protein YP_004268984.1 COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: chu:CHU_1890 Zn-dependent protease; PFAM: peptidase M48; SPTR: Possible Zn-dependent protease; PFAM: peptidase family M48 YP_004268985.1 InterPro IPR001478; KEGG: rca:Rcas_3528 hypothetical protein; SMART: PDZ/DHR/GLGF; SPTR: uncharacterized protein; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004268986.1 COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367: IPR007167; KEGG: plm:Plim_2241 iron dependent repressor; PFAM: Iron dependent repressor; Ferrous iron transporter FeoA subunit; SMART: Iron dependent repressor; SPTR: Iron dependent repressor; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_004268987.1 KEGG: sli:Slin_6230 hypothetical protein; SPTR: uncharacterized protein YP_004268988.1 COGs: COG0199 ribosomal protein S14; InterPro IPR001209; KEGG: cte:CT2176 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: 30S ribosomal protein S14; PFAM: ribosomal protein S14p/S29e YP_004268989.1 COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: plm:Plim_2967 helix-hairpin-helix DNA-binding class 1; SPTR: Competence protein ComEA-related protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_004268990.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: psl:Psta_3450 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase; PFAM: protein tyrosine kinase YP_004268991.1 KEGG: plm:Plim_4071 spermine synthase; SPTR: Spermine/spermidine synthase family protein YP_004268993.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004268994.1 COGs: COG1060 thiamine biosynthesis protein ThiH; InterPro IPR020050: IPR007197; KEGG: plm:Plim_2811 radical SAM protein; PFAM: radical SAM; SPTR: radical SAM protein; TIGRFAM: menaquinone biosynthesis protein; FO synthase, subunit 2; PFAM: radical SAM superfamily; TIGRFAM: radical SAM protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family YP_004268995.1 COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: psl:Psta_0154 protein of unknown function DUF178; PFAM: protein of unknown function DUF178; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178) YP_004268996.1 KEGG: gbr:Gbro_3635 lipoprotein LpqB, beta-propeller domain-like protein; SPTR: AzlC family protein YP_004268997.1 COGs: COG0460 homoserine dehydrogenase; InterPro IPR005106: IPR001342: IPR002912; KEGG: plm:Plim_2809 homoserine dehydrogenase; PFAM: homoserine dehydrogenase, catalytic; aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; SPTR: homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD binding domain; ACT domain YP_004268998.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bja:bll5074 arylsulfatase; PFAM: Sulfatase; SPTR: ArsA protein; PFAM: Sulfatase YP_004268999.1 InterPro IPR011444: IPR006558; KEGG: rba:RB7229 signal peptide; PFAM: protein of unknown function DUF1549; SMART: LamG-like jellyroll fold; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004269000.1 InterPro IPR013096; KEGG: bts:Btus_0256 cupin 2 conserved barrel domain protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain YP_004269001.1 InterPro IPR000835; KEGG: sfu:Sfum_1142 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator, MarR family; PFAM: MarR family YP_004269002.1 KEGG: plm:Plim_3307 hypothetical protein; SPTR: uncharacterized protein YP_004269003.1 COGs: COG0837 glucokinase; InterPro IPR003836; KEGG: gvi:gll1169 glucokinase; PFAM: glucokinase; PRIAM: glucokinase; SPTR: glucokinase; TIGRFAM: glucokinase; PFAM: glucokinase; TIGRFAM: glucokinase, proteobacterial type YP_004269004.1 COGs: COG0114 Fumarase; HAMAP: fumarate hydratase class II; InterPro IPR000362: IPR018951; KEGG: psl:Psta_0788 fumarate lyase; PFAM: fumarate lyase; Fumarase C, C-terminal; PRIAM: fumarate hydratase; SPTR: fumarate hydratase; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II YP_004269005.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR002218: IPR001327; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: glucose-inhibited division protein A-related; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; SPTR: FAD dependent oxidoreductase; PFAM: Thi4 family YP_004269006.1 COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: alv:Alvin_0324 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; PFAM: PIN domain YP_004269007.1 KEGG: alv:Alvin_0323 hypothetical protein; SPTR: Toxin-antitoxin system YP_004269008.1 KEGG: rba:RB11647 hypothetical protein; SPTR: uncharacterized protein YP_004269009.1 SPTR: uncharacterized protein YP_004269010.1 COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR004800: IPR001347: IPR000644; KEGG: plm:Plim_3740 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); cystathionine beta-synthase, core; PRIAM: Arabinose-5-phosphate isomerase; SPTR: uncharacterized protein; TIGRFAM: KpsF/GutQ; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein YP_004269011.1 KEGG: plm:Plim_3739 hypothetical protein; SPTR: uncharacterized protein YP_004269012.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: plm:Plim_4028 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004269013.1 KEGG: xcv:XCV3194 hypothetical protein; SPTR: uncharacterized protein YP_004269014.1 KEGG: plm:Plim_0275 hypothetical protein; SPTR: uncharacterized protein YP_004269015.1 COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: alv:Alvin_0244 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter family YP_004269016.1 COGs: COG1551 carbon storage regulator (could also regulate swarming and quorum sensing); InterPro IPR003751; KEGG: plm:Plim_2998 carbon storage regulator; PFAM: carbon storage regulator; SPTR: uncharacterized protein; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004269017.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: plm:Plim_2996 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004269018.1 COGs: COG1234 metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: plm:Plim_2995 Nuz; SPTR: uncharacterized protein YP_004269019.1 KEGG: plm:Plim_0527 hypothetical protein; SPTR: Leucine-rich repeat YP_004269020.1 InterPro IPR001440: IPR019734; KEGG: gbm:Gbem_3748 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat; PFAM: Tetratricopeptide repeat YP_004269021.1 InterPro IPR013148: IPR001362; KEGG: rba:RB5832 hypothetical protein; PFAM: glycosyl hydrolases family 32, N-terminal; SMART: glycoside hydrolase, family 32; SPTR: uncharacterized protein; PFAM: glycosyl hydrolases family 32 N-terminal domain YP_004269022.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: nde:NIDE1723 hypothetical protein; PFAM: endoribonuclease L-PSP; SPTR: uncharacterized protein; PFAM: endoribonuclease L-PSP YP_004269023.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959: IPR003593; KEGG: plm:Plim_0537 ATPase AAA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA) YP_004269024.1 KEGG: psl:Psta_2297 hypothetical protein; SPTR: uncharacterized protein YP_004269025.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB8266 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004269026.1 COGs: COG0449 glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR005855: IPR000583: IPR001347; KEGG: plm:Plim_1342 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); glutamine amidotransferase, class-II; PRIAM: glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_004269027.1 KEGG: rba:RB1523 hypothetical protein; SPTR: uncharacterized protein YP_004269028.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269029.1 KEGG: plm:Plim_3908 hypothetical protein; SPTR: uncharacterized protein YP_004269030.1 COGs: COG0548 acetylglutamate kinase; InterPro IPR004662: IPR001048; KEGG: plm:Plim_2768 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: acetylglutamate kinase; SPTR: acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_004269031.1 COGs: COG4992 ornithine/acetylornithine aminotransferase; HAMAP: acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR004636: IPR005814; KEGG: plm:Plim_2767 acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: acetylornithine transaminase; SPTR: acetylornithine aminotransferase; TIGRFAM: acetylornithine/succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_004269032.1 COGs: COG0078 ornithine carbamoyltransferase; HAMAP: ornithine carbamoyltransferase; InterPro IPR002292: IPR006132: IPR006131; KEGG: plm:Plim_2766 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: ornithine carbamoyltransferase; SPTR: ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_004269033.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); HAMAP: Bifunctional purine biosynthesis protein purH; InterPro IPR002695: IPR011607: IPR013982; KEGG: plm:Plim_1423 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; MGS-like; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; SPTR: Bifunctional purine biosynthesis protein purH; TIGRFAM: AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004269034.1 KEGG: mei:Msip34_0280 HtrA2 peptidase; SPTR: HtrA2 peptidase YP_004269035.1 KEGG: rce:RC1_0107 hypothetical protein; SPTR: uncharacterized protein YP_004269036.1 KEGG: gob:Gobs_0262 protein of unknown function UPF0016; SPTR: uncharacterized protein YP_004269037.1 KEGG: mva:Mvan_2488 integral membrane protein; SPTR: membrane protein YP_004269038.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004269039.1 InterPro IPR001434; KEGG: plm:Plim_1210 conserved repeat domain protein; SPTR: 60 kDa outer membrane protein; TIGRFAM: protein of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004269040.1 KEGG: plm:Plim_1978 hypothetical protein; SPTR: uncharacterized protein YP_004269041.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR003018: IPR001789; KEGG: plm:Plim_1913 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; GAF; SMART: Signal transduction response regulator, receiver domain; GAF; SPTR: Probable sensor kinase; PFAM: GAF domain; Response regulator receiver domain YP_004269042.1 COGs: COG0816 endonuclease involved in recombination ( Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR005227: IPR006641; KEGG: psl:Psta_3924 Holliday junction resolvase YqgF; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_004269043.1 COGs: COG1298 flagellar biosynthesis pathway component FlhA; InterPro IPR006301: IPR001712; KEGG: plm:Plim_1138 flagellar biosynthesis protein FlhA; PFAM: type III secretion system FHIPEP; SPTR: Flagella-associated protein; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA YP_004269044.1 COGs: COG1419 flagellar GTP-binding protein; InterPro IPR020006: IPR000897: IPR003593; KEGG: psl:Psta_3558 GTP-binding signal recognition particle SRP54 G-domain protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: ATPase, AAA+ type, core; SPTR: GTP-binding signal recognition particle SRP54, G-domain; TIGRFAM: Signal-recognition particle (SRP)-type GTPase; manually curated; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF YP_004269045.1 COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: cce:Ccel_2029 cobyrinic acid ac-diamide synthase; SPTR: uncharacterized protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004269046.1 COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterPro IPR014284: IPR012845: IPR007627: IPR007624: IPR 007630; KEGG: plm:Plim_1142 RNA polymerase sigma factor, FliA/WhiG family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family YP_004269047.1 KEGG: rba:RB11055 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat YP_004269048.1 KEGG: aba:acid345_3447 Zn-dependent hydrolase; SPTR: Zn-dependent hydrolase YP_004269049.1 InterPro IPR012902; KEGG: plm:Plim_0033 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269050.1 KEGG: cal:CaO19.8872 similar to S. cerevisiae YPR091C; SPTR: uncharacterized protein YP_004269051.1 KEGG: sai:Saci_1761 hypothetical protein; SPTR: uncharacterized protein YP_004269052.1 KEGG: pkn:PKH_123890 hypothetical protein; SPTR: Envelope glycoprotein gp160 YP_004269053.1 KEGG: aoe:Clos_0607 hypothetical protein; SPTR: uncharacterized protein YP_004269054.1 InterPro IPR001440: IPR019734; KEGG: plm:Plim_1771 tetratricopeptide TPR_4; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004269055.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481: IPR004837; KEGG: hor:Hore_20130 Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger membrane region; SPTR: K+-dependent Na+/Ca+ exchanger homolog; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein YP_004269056.1 KEGG: glo:Glov_2641 hypothetical protein; SPTR: radical SAM domain protein YP_004269057.1 KEGG: rba:RB10956 hypothetical protein; SPTR: uncharacterized protein YP_004269058.1 COGs: COG4717 conserved hypothetical protein; KEGG: plm:Plim_3341 hypothetical protein; SPTR: uncharacterized protein YP_004269059.1 KEGG: azl:AZL_004740 phosphoesterase; SPTR: phosphoesterase YP_004269060.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); InterPro IPR002881; KEGG: mxa:MXAN_6473 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004269061.1 KEGG: psl:Psta_1321 hypothetical protein; SPTR: uncharacterized protein YP_004269062.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psl:Psta_1052 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004269063.1 COGs: COG4312 conserved hypothetical protein; InterPro IPR010296; KEGG: kfl:Kfla_2601 protein of unknown function DUF899 thioredoxin family protein; PFAM: protein of unknown function DUF899, thioredoxin-like; SPTR: uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF899) YP_004269064.1 KEGG: mei:Msip34_1909 O-antigen polymerase; SPTR: uncharacterized protein YP_004269065.1 COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: psl:Psta_2743 YCII-related protein; PFAM: YCII-related; SPTR: DGPFAETKE domain protein; PFAM: YCII-related domain YP_004269066.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003439: IPR003593; KEGG: psl:Psta_4675 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter protein; PFAM: ABC transporter YP_004269067.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127; KEGG: gwc:GWCH70_1397 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family YP_004269068.1 COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959: IPR003593; KEGG: plm:Plim_1844 ATPase AAA central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004269069.1 KEGG: kla:KLLA0D04114g hypothetical protein; SPTR: KLLA0D04114p YP_004269070.1 KEGG: plm:Plim_3648 serine/threonine protein kinase-related protein; SPTR: F-box-containing protein 1 YP_004269071.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: rba:RB9535 amino acid permease homolog YkbA; PFAM: Amino acid permease domain; SPTR: Amino acid permease homolog ykbA; PFAM: Amino acid permease YP_004269072.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: rba:RB5029 methyltransferase; PFAM: methyltransferase type 11; SPTR: uncharacterized protein; PFAM: methyltransferase domain YP_004269073.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterPro IPR018320: IPR020046: IPR020047: IPR002562: IPR 001098: IPR002421: IPR008918; KEGG: plm:Plim_3011 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_004269074.1 InterPro IPR005821; KEGG: pin:Ping_1941 ion transport protein; PFAM: ion transport; SPTR: uncharacterized protein; PFAM: ion transporter YP_004269075.1 KEGG: plm:Plim_1295 hypothetical protein; SPTR: uncharacterized protein; PFAM: cytochrome C' YP_004269076.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: rba:RB11693 hypothetical protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: uncharacterized protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004269077.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683; KEGG: rba:RB6985 NADH-dependent dehydrogenase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004269078.1 COGs: COG1043 acyl-(acyl carrier protein); InterPro IPR010137: IPR001451; KEGG: syf:Synpcc7942_2371 UDP-N-acetylglucosamine acyltransferase; PRIAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:acyl-[acyl-carrier-protein]--UDP-N-acetylgluco samineo-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004269079.1 KEGG: gvi:gll1113 hypothetical protein; SPTR: uncharacterized protein; PFAM: mannosyl oligosaccharide glucosidase YP_004269080.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_2866 ABC transporter; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter YP_004269081.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR010161: IPR002933: IPR011650; KEGG: plm:Plim_3800 peptidase T; PFAM: peptidase M20; peptidase M20, dimerisation; PRIAM: Tripeptide aminopeptidase; SPTR: peptidase T; TIGRFAM: peptidase M20B, tripeptide aminopeptidase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: peptidase T YP_004269082.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR013371: IPR004456: IPR019304: IPR006124; KEGG: plm:Plim_0308 proposed homoserine kinase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme; PRIAM: phosphoglycerate mutase; SPTR: Cofactor-independent phosphoglycerate mutase; TIGRFAM: homoserine kinase, ; Cofactor-independent phosphoglycerate mutase, archaeal; PFAM: metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase YP_004269083.1 InterPro IPR002035; KEGG: psl:Psta_0521 von Willebrand factor A; PFAM: von Willebrand factor, type A; SPTR: uncharacterized protein; PFAM: von Willebrand factor A domain YP_004269084.1 InterPro IPR012495; KEGG: psl:Psta_2074 TadE family protein; PFAM: TadE-like; SPTR: uncharacterized protein; manually curated; PFAM: TadE-like protein YP_004269085.1 InterPro IPR012495; KEGG: rba:RB7559 transporter; PFAM: TadE-like; SPTR: uncharacterized protein; PFAM: TadE-like protein YP_004269086.1 COGs: COG3540 phosphodiesterase/alkaline phosphatase D; KEGG: rba:RB5813 alkaline phosphatase D; SPTR: Probable alkaline phosphatase D; PFAM: PhoD-like phosphatase YP_004269087.1 KEGG: rpb:RPB_3778 hypothetical protein; SPTR: uncharacterized protein YP_004269088.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: plm:Plim_0199 dihydrouridine synthase; PFAM: tRNA-dihydrouridine synthase; SPTR: Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein; PFAM: dihydrouridine synthase (Dus); TIGRFAM: hypothetical protein YP_004269089.1 COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: plm:Plim_1837 HD-GYP domain-like protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SPTR: HD-GYP domain-like protein YP_004269090.1 COGs: COG0610 type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473: IPR007409: IPR006935: IPR014001; KEGG: plm:Plim_1217 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family YP_004269091.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mba:Mbar_A2665 type I restriction-modification system specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: type I restriction-modification system specificity subunit; PFAM: type I restriction modification DNA specificity domain YP_004269092.1 COGs: COG0286 type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: plm:Plim_1221 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Site-specific DNA-methyltransferase (adenine-specific); PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_004269093.1 KEGG: sat:SYN_03586 cytoplasmic protein; SPTR: Hypothetical cytosolic protein YP_004269094.1 KEGG: aba:acid345_1402 flotillin; SPTR: uncharacterized protein YP_004269095.1 KEGG: ecy:ECSE_2564 phage DNA modification protein; SPTR: uncharacterized protein YP_004269096.1 KEGG: deg:DehalGT_1243 ParB domain protein nuclease; SPTR: uncharacterized protein; PFAM: ParB-like nuclease domain YP_004269097.1 KEGG: pti:PHATRDRAFT_48613 hypothetical protein; SPTR: Predicted protein YP_004269098.1 KEGG: npu:Npun_AF163 hypothetical protein; SPTR: uncharacterized protein YP_004269099.1 KEGG: ani:AN1431.2 hypothetical protein; SPTR: uncharacterized protein YP_004269100.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004269101.1 KEGG: rci:RCIX213 glycosyltransferase (group 1); SPTR: GIY-YIG catalytic domain YP_004269102.1 KEGG: apo:Arcpr_0892 LamG domain protein jellyroll fold domain protein; SPTR: LamG domain protein jellyroll fold domain protein YP_004269103.1 KEGG: bac:BamMC406_6171 outer membrane autotransporter; SPTR: Fibronectin type III domain protein YP_004269104.1 KEGG: sse:Ssed_1431 hypothetical protein; SPTR: receptor binding protein YP_004269105.1 KEGG: sgl:SG0857 phage tail fiber protein; SPTR: Phage tail fiber protein YP_004269106.1 KEGG: plm:Plim_4264 hypothetical protein; SPTR: uncharacterized protein YP_004269107.1 KEGG: plm:Plim_4263 phage tape measure protein; SPTR: Phage tape measure protein YP_004269108.1 KEGG: ddi:DDB_G0280747 hypothetical protein; SPTR: uncharacterized protein YP_004269109.1 KEGG: dvl:Dvul_0863 hypothetical protein; SPTR: uncharacterized protein YP_004269110.1 KEGG: rsk:RSKD131_3036 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3168) YP_004269111.1 InterPro IPR010064; KEGG: cbf:CLI_3264 HK97 family phage protein; SPTR: Phage protein, HK97 gp10 family; TIGRFAM: Phage protein, HK97, gp10; PFAM: bacteriophage protein of unknown function (DUF646); TIGRFAM: phage protein, HK97 gp10 family YP_004269112.1 COGs: COG5614 bacteriophage head-tail adaptor; InterPro IPR008767; KEGG: asu:Asuc_1242 phage head-tail adaptor, SPTR: Phage head-tail adaptor, ; TIGRFAM: Phage head-tail joining protein; PFAM: Phage head-tail joining protein; TIGRFAM: phage head-tail adaptor, , SPP1 family YP_004269113.1 InterPro IPR011738; KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phage QLRG family, DNA packaging; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family; uncharacterized phage protein ( DNA packaging) YP_004269115.1 COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: ssm:Spirs_2496 phage major capsid protein, HK97 family; SPTR: Major capsid protein, HK97 family; TIGRFAM: Phage major capsid protein, HK97; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family YP_004269116.1 COGs: COG3740 Phage head maturation protease; InterPro IPR006433; KEGG: ssm:Spirs_2497 phage prohead protease HK97 family; PFAM: peptidase U35, phage prohead HK97; SPTR: Phage prohead protease HK97 family; TIGRFAM: peptidase U35, phage prohead HK97; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease HK97 family YP_004269117.1 COGs: COG4695 Phage-related protein; InterPro IPR006427: IPR006944; KEGG: hmo:HM1_2959 phage portal protein, hk97 family; PFAM: Phage portal protein; SPTR: uncharacterized protein; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family YP_004269118.1 KEGG: mat:MARTH_orf224 hypothetical lipoprotein; SPTR: uncharacterized protein YP_004269119.1 COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: det:DET1088 terminase, large subunit, PFAM: Phage terminase; SPTR: terminase, large subunit, ; PFAM: Phage terminase YP_004269120.1 COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: clj:CLJU_c03520 phage terminasesmall subunit; SPTR: Predicted phage terminase, small subunit; TIGRFAM: Phage terminase, small subunit, , P27; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family YP_004269121.1 KEGG: cyn:Cyan7425_2606 hypothetical protein; SPTR: uncharacterized protein YP_004269122.1 KEGG: mhu:Mhun_2180 Sep-tRNA:Cys-tRNA synthetase; SPTR: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 2 YP_004269123.1 InterPro IPR002711: IPR003615; KEGG: cro:ROD_03751 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: membrane protein; manually curated; PFAM: HNH endonuclease YP_004269124.1 KEGG: psl:Psta_0443 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phage integrase family YP_004269125.1 InterPro IPR000340; KEGG: plm:Plim_3932 dual specificity protein phosphatase; PFAM: Dual specificity phosphatase, catalytic domain; SPTR: uncharacterized protein; PFAM: Dual specificity phosphatase, catalytic domain YP_004269126.1 KEGG: rba:RB3517 hypothetical protein; SPTR: uncharacterized protein YP_004269127.1 COGs: COG3781 membrane protein; KEGG: llo:LLO_2003 hypothetical protein; SPTR: uncharacterized protein; PFAM: Bestrophin YP_004269128.1 COGs: COG0288 carbonic anhydrase; InterPro IPR001765; KEGG: scl:sce6888 hypothetical protein; PFAM: carbonic anhydrase; PRIAM: carbonate dehydratase; SPTR: carbonic anhydrase; PFAM: carbonic anhydrase YP_004269129.1 KEGG: sus:acid_0979 xanthan lyase; SPTR: uncharacterized protein YP_004269130.1 KEGG: mar:MAE_11990 hypothetical protein; SPTR: uncharacterized protein YP_004269131.1 InterPro IPR000182; KEGG: ssm:Spirs_3930 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004269132.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: tit:Thit_1306 serine/threonine protein kinase with PASTA sensor(s); PFAM: serine/threonine-protein kinase-like domain; PRIAM: Mitogen-activated protein kinase kinase kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase pknB; PFAM: protein kinase domain YP_004269133.1 KEGG: pfo:Pfl01_0491 type I secretion outer membrane protein, TolC; SPTR: uncharacterized protein YP_004269134.1 KEGG: oaa:100075371 similar to histidine decarboxylase; SPTR: chromosome 12 SCAF14996, whole genome shotgun sequence. YP_004269135.1 InterPro IPR012902; KEGG: plm:Plim_2542 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269136.1 COGs: COG3258 cytochrome C; InterPro IPR003088; KEGG: rba:RB11269 cytochrome C; PFAM: cytochrome C, class I; SPTR: Probable cytochrome C; PFAM: cytochrome C YP_004269137.1 InterPro IPR007837; KEGG: bay:RBAM_010990 YisT; PFAM: DinB; SPTR: Nuclease inhibitor; PFAM: DinB family YP_004269138.1 InterPro IPR001647; KEGG: ava:Ava_4037 TetR family transcriptional regulator; PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator protein; PFAM: Bacterial regulatory proteins, tetR family YP_004269139.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: rba:RB9565 hydrolase; PFAM: alpha/beta hydrolase fold-1; SPTR: hydrolase; PFAM: alpha/beta hydrolase fold YP_004269140.1 COGs: COG3558 conserved hypothetical protein; InterPro IPR009783; KEGG: psl:Psta_0273 protein of unknown function DUF1348; PFAM: protein of unknown function DUF1348; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1348) YP_004269142.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB6956 arylsulphatase A; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004269143.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rba:RB10680 hypothetical protein; PFAM: glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: glycosyl transferases group 1 YP_004269144.1 KEGG: plm:Plim_3231 hypothetical protein; SPTR: uncharacterized protein YP_004269145.1 COGs: COG1235 metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: plm:Plim_2290 beta-lactamase domain protein; SPTR: beta-lactamase; PFAM: metallo-beta-lactamase superfamily YP_004269146.1 KEGG: psl:Psta_4770 hypothetical protein; SPTR: uncharacterized protein YP_004269147.1 COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR001440: IPR019734; KEGG: plm:Plim_3977 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004269148.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); KEGG: plm:Plim_1690 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004269149.1 KEGG: plm:Plim_0578 hypothetical protein; SPTR: uncharacterized protein YP_004269150.1 COGs: COG0657 esterase/lipase; InterPro IPR002018; KEGG: rba:RB11927 lipase/esterase; PFAM: carboxylesterase, type B; SPTR: Probable lipase/esterase; PFAM: alpha/beta hydrolase fold YP_004269151.1 KEGG: ecx:EcHS_A2424 hypothetical protein; SPTR: uncharacterized protein YP_004269152.1 COGs: COG0587 DNA polymerase III subunit alpha; InterPro IPR004805: IPR004013: IPR011708: IPR004365: IPR 003141; KEGG: plm:Plim_1265 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III subunit alpha; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004269153.1 InterPro IPR012902; KEGG: plm:Plim_0377 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269154.1 InterPro IPR007047; KEGG: psl:Psta_2070 Flp/Fap pilin component; PFAM: Flp/Fap pilin component; SPTR: uncharacterized protein; PFAM: Flp/Fap pilin component YP_004269156.1 COGs: COG4960 Flp pilus assembly protein protease CpaA; InterPro IPR000045; KEGG: plm:Plim_0796 peptidase A24A prepilin type IV; PFAM: peptidase A24A, prepilin type IV; SPTR: peptidase A24A prepilin type IV; PFAM: type IV leader peptidase family YP_004269157.1 COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR017592: IPR013974; KEGG: plm:Plim_0795 Flp pilus assembly protein CpaB; PFAM: SAF domain; SPTR: Flp pilus assembly CpaB; TIGRFAM: pilus assembly, Flp-type CpaB; TIGRFAM: Flp pilus assembly protein CpaB YP_004269158.1 COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR007055: IPR004846; KEGG: plm:Plim_0794 type II and III secretion system protein; PFAM: type II/III secretion system; transport-associated; SPTR: outer membrane channel for pilus assembly CpaC; PFAM: phospholipid-binding domain; Bacterial type II and III secretion system protein YP_004269159.1 COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: plm:Plim_0793 response regulator receiver; SPTR: Probable pilus assembly protein CpaE; PFAM: Response regulator receiver domain; CobQ/CobB/MinD/ParA nucleotide binding domain YP_004269160.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: rba:RB5380 serine/threonine protein kinase; SMART: pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Probable serine/threonine protein kinase YP_004269161.1 InterPro IPR000866; KEGG: psl:Psta_2224 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004269162.1 InterPro IPR011971: IPR019052; KEGG: rba:RB4347 hypothetical protein; PFAM: protein of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein YP_004269163.1 KEGG: azc:AZC_0605 rubredoxin; SPTR: Rubredoxin YP_004269164.1 KEGG: dra:DR_A0034 UDP-galactose-lipid carrier transferase; SPTR: UDP-galactose-lipid carrier transferase YP_004269165.1 InterPro IPR003751; KEGG: nth:Nther_2232 carbon storage regulator; PFAM: carbon storage regulator; SPTR: carbon storage regulator homolog; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004269166.1 KEGG: rpe:RPE_0425 ABC transporter; SPTR: ATP-binding protein of ABC transporter YP_004269167.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: hau:Haur_0128 diacylglycerol kinase; PFAM: diacylglycerol kinase, catalytic domain; SMART: diacylglycerol kinase, catalytic domain; SPTR: diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_004269168.1 COGs: COG0176 transaldolase; InterPro IPR001585; KEGG: plm:Plim_3832 transaldolase; PFAM: transaldolase; SPTR: transaldolase; PFAM: transaldolase; TIGRFAM: transaldolase, mycobacterial type YP_004269169.1 COGs: COG3829 transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR002197; KEGG: plm:Plim_0139 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SPTR: Sigma-54 factor interaction domain-containing protein; PFAM: Bacterial regulatory protein, Fis family YP_004269170.1 KEGG: cyn:Cyan7425_3721 serine/threonine protein kinase; SPTR: uncharacterized protein YP_004269171.1 InterPro IPR007419; KEGG: plm:Plim_1171 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S]-binding domain; SPTR: uncharacterized protein; PFAM: BFD-like [2Fe-2S] binding domain YP_004269172.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: plm:Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family; PFAM: glycosyl transferase, family 39; SPTR: uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004269173.1 InterPro IPR019734; KEGG: plm:Plim_0239 TPR repeat-containing protein; SPTR: uncharacterized protein; PFAM: Bacterial transcriptional activator domain YP_004269174.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683; KEGG: rba:RB10266 NADH-dependent dehydrogenase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dyhydrogenase- NAD-employing oxidorecutase of the GFO family; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004269175.1 COGs: COG0590 cytosine/adenosine deaminase; InterPro IPR002125; KEGG: plm:Plim_3619 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: cytosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004269176.1 KEGG: pti:PHATRDRAFT_9947 hypothetical protein; SPTR: uncharacterized protein YP_004269177.1 COGs: COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent); InterPro IPR003726; KEGG: rle:RL1357 homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase; SPTR: homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase YP_004269178.1 COGs: COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent); InterPro IPR003726; KEGG: rle:RL1357 homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase; SPTR: homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase YP_004269179.1 KEGG: scl:sce3228 sigma-54 dependent transcriptional regulator; SPTR: Os07g0485400 protein YP_004269180.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001: IPR001650: IPR011545; KEGG: pla:Plav_2485 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004269181.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB11123 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase; SPTR: N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase YP_004269182.1 InterPro IPR009288; KEGG: ote:Oter_4571 AIG2 family protein; PFAM: AIG2-like; SPTR: AIG2 family protein; PFAM: AIG2-like family YP_004269183.1 COGs: COG3320 dehydrogenase domain of multifunctional non-ribosomal peptide synthetase; InterPro IPR013120; KEGG: plm:Plim_0364 male sterility domain protein; PFAM: Male sterility, NAD-binding; SPTR: Probable acrA1 protein; PFAM: Male sterility protein YP_004269184.1 KEGG: plm:Plim_3459 hypothetical protein; SPTR: uncharacterized protein YP_004269185.1 COGs: COG1726 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrA; HAMAP: Na(+)-translocating NADH-quinone reductase subunit A; InterPro IPR008703; KEGG: mmw:Mmwyl1_1711 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A; SPTR: Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: Na-translocating NADH-quinone reductase subunit A; PFAM: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); NQRA C-terminal domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit YP_004269186.1 COGs: COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrB; InterPro IPR010966: IPR004338; KEGG: rba:RB1832 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: Na(+)-translocating NADH-quinone reductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating subunit beta YP_004269187.1 COGs: COG2869 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrC; InterPro IPR010204: IPR007329; KEGG: sde:Sde_1799 Na(+)-translocating NADH-quinone reductase subunit C; PFAM: FMN-binding; SPTR: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; PFAM: FMN-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YP_004269188.1 COGs: COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrD; InterPro IPR011292: IPR003667; KEGG: abo:ABO_1035 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: electron transport complex, Rnf/Nqr; SPTR: Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YP_004269189.1 COGs: COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrE; HAMAP: Na(+)-translocating NADH-quinone reductase subunit E; InterPro IPR010967: IPR003667; KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: electron transport complex, Rnf/Nqr; SPTR: Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YP_004269190.1 COGs: COG2871 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF; InterPro IPR010205: IPR001041: IPR008333: IPR001433; KEGG: rba:RB1837 Na(+)-translocating NADH-quinone reductase subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding; oxidoreductase, FAD-binding domain; Ferredoxin; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: Na+-translocating NADH:quinone oxidoreductase, subunit nqrF; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; oxidoreductase FAD-binding domain; oxidoreductase NAD-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit YP_004269191.1 COGs: COG1477 membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: nhl:Nhal_2554 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE family YP_004269192.1 InterPro IPR007495; KEGG: abo:ABO_1039 hypothetical protein; PFAM: protein of unknown function DUF539; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF539) YP_004269193.1 COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: psl:Psta_2650 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Predicted enzyme; PFAM: FAD dependent oxidoreductase YP_004269194.1 InterPro IPR001845; KEGG: psl:Psta_1414 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory protein, arsR family YP_004269195.1 KEGG: plm:Plim_1867 hypothetical protein; SPTR: uncharacterized protein YP_004269196.1 InterPro IPR011467; KEGG: plm:Plim_3670 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1573) YP_004269197.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: nhl:Nhal_2852 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_004269198.1 InterPro IPR000182; KEGG: vpa:VP1373 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004269199.1 COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153; KEGG: cyt:cce_4584 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; PFAM: Sodium/hydrogen exchanger family YP_004269200.1 COGs: COG0260 leucyl aminopeptidase; HAMAP: cytosol aminopeptidase; InterPro IPR000819; KEGG: plm:Plim_3886 leucyl aminopeptidase; PFAM: peptidase M17, leucyl aminopeptidase, C-terminal; SPTR: leucyl aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain YP_004269201.1 KEGG: rba:RB2046 hypothetical protein; SPTR: uncharacterized protein YP_004269202.1 KEGG: plm:Plim_3543 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Planctomycetes uncharacterized domain TIGR03009 YP_004269204.1 KEGG: plm:Plim_0723 hypothetical protein; SPTR: uncharacterized protein YP_004269205.1 KEGG: plm:Plim_0724 hypothetical protein; SPTR: uncharacterized protein YP_004269206.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_3749 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004269207.1 KEGG: plm:Plim_3750 hypothetical protein; SPTR: uncharacterized protein YP_004269208.1 KEGG: plm:Plim_3751 hypothetical protein; SPTR: uncharacterized protein YP_004269209.1 KEGG: psl:Psta_4562 hypothetical protein; SPTR: uncharacterized protein YP_004269210.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: plm:Plim_0422 phosphoesterase RecJ domain protein; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SPTR: phosphoesterase RecJ domain protein; PFAM: DHH family; DHHA1 domain YP_004269211.1 KEGG: plm:Plim_0770 hypothetical protein; SPTR: Biotin synthase YP_004269212.1 KEGG: plm:Plim_3460 hypothetical protein; SPTR: uncharacterized protein YP_004269213.1 InterPro IPR019587: IPR010499; KEGG: rba:RB8406 hypothetical protein; PFAM: Bacterial transcription activator, effector binding; polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: polyketide cyclase / dehydrase and lipid transport; Bacterial transcription activator, effector binding domain YP_004269214.1 COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: psl:Psta_1753 glutamine synthetase catalytic region; PFAM: glutamine synthetase, catalytic domain; SPTR: glutamine synthetaseII; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase type III N terminal YP_004269215.1 COGs: COG1294 cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: psl:Psta_4590 cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; SPTR: cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome bd ubiquinol oxidase subunit II; PFAM: cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase subunit II (cydB) YP_004269216.1 COGs: COG1271 cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: psl:Psta_4591 cytochrome bd ubiquinol oxidase subunit I; PFAM: cytochrome bd ubiquinol oxidase subunit I; SPTR: cytochrome bd ubiquinol oxidase subunit I; PFAM: Bacterial cytochrome Ubiquinol Oxidase YP_004269217.1 KEGG: aap:NT05HA_1901 glutathionylspermidine synthase; SPTR: glutathionylspermidine synthase YP_004269218.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_0445 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2 YP_004269219.1 InterPro IPR000326; KEGG: plm:Plim_3219 phosphoesterase PA-phosphatase related protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: phosphoesterase PA-phosphatase related protein; PFAM: PAP2 superfamily YP_004269220.1 InterPro IPR012307; KEGG: plm:Plim_4206 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein YP_004269221.1 KEGG: plm:Plim_4205 hypothetical protein; SPTR: uncharacterized protein YP_004269222.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004269223.1 COGs: COG1029 Formylmethanofuran dehydrogenase subunit B; KEGG: psl:Psta_1617 formylmethanofuran dehydrogenase subunit B-like protein; SPTR: Formylmethanofuran dehydrogenase subunit B YP_004269224.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; HAMAP: Bifunctional protein hldE; InterPro IPR004821: IPR011611: IPR004820; KEGG: plm:Plim_0898 cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; carbohydrate/purine kinase; SPTR: RfaE bifunctional protein, domains I & II; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain II; rfaE bifunctional protein, domain I; cytidyltransferase-related domain YP_004269225.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR011910: IPR002201; KEGG: plm:Plim_0899 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; SPTR: ADP-heptose--LPS heptosyltransferase II, ; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004269226.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB2663 heparan N-sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004269227.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR010093; KEGG: plm:Plim_2854 DNA binding domain protein, excisionase family; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Response regulator receiver domain; TIGRFAM: DNA binding domain, excisionase family YP_004269229.1 KEGG: psl:Psta_4631 hypothetical protein; SPTR: uncharacterized protein; PFAM: polysaccharide pyruvyl transferase YP_004269230.1 KEGG: fal:FRAAL6637 hypothetical protein; SPTR: ABC transporter ATP-binding protein YP_004269231.1 KEGG: gwc:GWCH70_1648 hypothetical protein; SPTR: uncharacterized protein YP_004269232.1 COGs: COG1506 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: plm:Plim_2527 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; SPTR: dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; PFAM: prolyl oligopeptidase family YP_004269233.1 COGs: COG2912 conserved hypothetical protein; KEGG: plm:Plim_2055 hypothetical protein; SPTR: uncharacterized protein YP_004269234.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR001254; KEGG: psl:Psta_3927 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Probable serine protease DO-like protein; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF) YP_004269235.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-deoxyrhamnose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004269236.1 KEGG: srm:SRM_02487 cationic amino acid transporter; SPTR: NADH dehydrogenase (Ubiquinone) chain M YP_004269237.1 KEGG: apt:APA01_20600 hypothetical protein; SPTR: uncharacterized protein YP_004269238.1 COGs: COG0406 fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: plm:Plim_0928 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SPTR: phosphoglycerate/bisphosphoglycerate mutase; PFAM: phosphoglycerate mutase family YP_004269239.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: plm:Plim_0056 methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004269240.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB7772 arylsulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004269241.1 KEGG: psl:Psta_1908 hypothetical protein; SPTR: uncharacterized protein YP_004269242.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269243.1 InterPro IPR018391: IPR002372; KEGG: psl:Psta_4521 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: uncharacterized protein YP_004269244.1 KEGG: dwi:Dwil_GK22959 GK22959 gene product from transcript GK22959-RA; SPTR: GK22959 YP_004269245.1 InterPro IPR010496; KEGG: plm:Plim_1708 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004269246.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_01216 arylsulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: arylsulfatase; PFAM: Sulfatase YP_004269247.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006311: IPR006328: IPR006388: IPR005834; KEGG: hba:Hbal_1412 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Cryptic haloacid dehalogenase 1; TIGRFAM: Haloacid dehalogenase, type II; Twin-arginine translocation pathway, signal sequence; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; 2-haloalkanoic acid dehalogenase, type II YP_004269248.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dau:Daud_0028 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: glutamine--scyllo-inositol transaminase; SPTR: glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004269249.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR020019: IPR003362: IPR001451; KEGG: ngk:NGK_0123 PglB; PFAM: Bacterial sugar transferase; Bacterial transferase hexapeptide repeat; PRIAM: undecaprenyl-phosphate galactose phosphotransferase; SPTR: uncharacterized protein; TIGRFAM: Sialic acid O-acyltransferase, NeuD; PFAM: Bacterial sugar transferase; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_004269250.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dtu:Dtur_0585 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004269251.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: lhk:LHK_02802 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; manually curated; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004269252.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dth:DICTH_0438 WbpH; PFAM: glycosyl transferase, group 1; SPTR: WbpH; PFAM: glycosyl transferases group 1 YP_004269253.1 KEGG: aba:acid345_3308 hypothetical protein; SPTR: uncharacterized protein YP_004269254.1 COGs: COG1541 Coenzyme F390 synthetase; KEGG: mev:Metev_2283 capsular polysaccharide biosynthesis protein; SPTR: Capsular polysaccharide biosynthesis protein; PFAM: AMP-binding enzyme YP_004269255.1 COGs: COG2244 membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: mac:MA4450 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein YP_004269256.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451; KEGG: dtu:Dtur_0577 transferase hexapeptide repeat containing protein; PFAM: Bacterial transferase hexapeptide repeat; SPTR: transferase; PFAM: Bacterial transferase hexapeptide (three repeats) YP_004269257.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: dol:Dole_1819 oxidoreductase domain-containing protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, C-terminal alpha/beta domain; oxidoreductase family, NAD-binding Rossmann fold YP_004269258.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tte:TTE0651 cell wall biogenesis regulatory protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: glutamine--scyllo-inositol transaminase; SPTR: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004269259.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683: IPR004104; KEGG: npu:Npun_F5032 oxidoreductase domain-containing protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; PRIAM: glucose-fructose oxidoreductase; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004269260.1 InterPro IPR002035: IPR010768; KEGG: mxa:MXAN_6470 hypothetical protein; PFAM: protein of unknown function DUF1355; von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: uncharacterized protein; PFAM: von Willebrand factor A domain; protein of unknown function (DUF1355) YP_004269261.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: psl:Psta_2438 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: nitrogen regulation protein NR(I); PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004269262.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: psl:Psta_2439 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Probable nitrogen regulation protein ntrB; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004269263.1 InterPro IPR012902; KEGG: plm:Plim_4047 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269264.1 InterPro IPR006037; KEGG: nhl:Nhal_3582 TrkA-C domain protein; PFAM: Regulator of K+ conductance, C-terminal; SPTR: TrkA-C domain protein; PFAM: TrkA-C domain YP_004269265.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR001610: IPR003661: IPR003594: IPR 001789: IPR008207: IPR013655: IPR013767; KEGG: ttr:Tter_2194 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; PAS fold; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box YP_004269266.1 InterPro IPR004993; KEGG: rba:RB12640 auxin-responsive-like protein; PFAM: GH3 auxin-responsive promoter; SPTR: Probable auxin-responsive-like protein; PFAM: GH3 auxin-responsive promoter YP_004269267.1 KEGG: mxa:MXAN_3980 hypothetical protein; SPTR: acetyltransferase, gnat family YP_004269268.1 COGs: COG0554 glycerol kinase; HAMAP: glycerol kinase; InterPro IPR005999: IPR018484: IPR018485; KEGG: sti:Sthe_3121 glycerol kinase; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal; PRIAM: glycerol kinase; SPTR: glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_004269269.1 COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: plm:Plim_0588 prolyl oligopeptidase; PFAM: protein of unknown function DUF885, bacterial; SPTR: prolyl oligopeptidase; PFAM: Bacterial protein of unknown function (DUF885) YP_004269270.1 InterPro IPR012902; KEGG: plm:Plim_1625 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269271.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269272.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: ppf:Pput_4353 glycosyl transferase, group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1; PFAM: glycosyl transferases group 1 YP_004269273.1 COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: cma:Cmaq_1011 glycoside hydrolase family protein; PFAM: glycoside hydrolase, family 37; SPTR: glycoside hydrolase family 37; PFAM: Trehalase YP_004269274.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR020817: IPR001453; KEGG: psl:Psta_4259 molybdenum cofactor synthesis domain protein; PFAM: Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis mog; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_004269275.1 InterPro IPR019734: IPR004155: IPR001440; KEGG: plm:Plim_3354 hypothetical protein; PFAM: Tetratricopeptide TPR-1; PBS lyase HEAT-like repeat; SPTR: Tetratricopeptide repeat domain containing protein; PFAM: PBS lyase HEAT-like repeat; Tetratricopeptide repeat YP_004269276.1 InterPro IPR000086; KEGG: amu:Amuc_0001 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: MutT-like protein; PFAM: NUDIX domain YP_004269277.1 COGs: COG1225 peroxiredoxin; InterPro IPR000866; KEGG: noc:Noc_0989 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004269278.1 COGs: COG0669 phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004821: IPR001980: IPR004820; KEGG: plm:Plim_1290 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004269279.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR003661: IPR003594: IPR001789: IPR 013656; KEGG: plm:Plim_1346 PAS sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: Response regulator receiver domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004269280.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482; KEGG: plm:Plim_0082 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: type II secretion system protein E; PFAM: type II/IV secretion system protein YP_004269281.1 KEGG: plm:Plim_0083 hypothetical protein; SPTR: uncharacterized protein YP_004269282.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR004622; KEGG: plm:Plim_1351 DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III delta prime subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III delta' subunit YP_004269283.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: plm:Plim_0080 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: Signal peptidase-like protein; PFAM: PSP1 C-terminal conserved region YP_004269284.1 KEGG: hut:Huta_0219 acetyl xylan esterase; SPTR: acetyl xylan esterase; PFAM: PhoPQ-activated pathogenicity-related protein YP_004269285.1 COGs: COG2055 malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: pab:PAB1791 malate dehydrogenase; PFAM: malate/L-lactate dehydrogenase; SPTR: malate dehydrogenase; PFAM: malate/L-lactate dehydrogenase YP_004269286.1 KEGG: plm:Plim_3843 leucine-rich repeat, ribonuclease inhibitor subtype; SPTR: ribonuclease inhibitor YP_004269287.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: sfu:Sfum_3431 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Similar to 3-oxoacyl carrier protein reductase; PFAM: short chain dehydrogenase YP_004269288.1 KEGG: cwo:Cwoe_3188 hypothetical protein; SPTR: outermembrane protein (Modular protein) YP_004269289.1 COGs: COG0480 translation elongation factors (GTPase); InterPro IPR004540: IPR005225: IPR000795: IPR004161: IPR 005517: IPR000640; KEGG: plm:Plim_0475 translation elongation factor G; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; SPTR: translation elongation factor G; TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004269290.1 InterPro IPR011444; KEGG: rba:RB12155 signal peptide; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004269291.1 InterPro IPR006311: IPR010869; KEGG: rba:RB12159 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004269292.1 KEGG: rsq:Rsph17025_3489 hypothetical protein; SPTR: uncharacterized protein YP_004269293.1 KEGG: rba:RB1444 hypothetical protein; SPTR: Probable tetratricopeptide repeat family protein YP_004269294.1 KEGG: abi:Aboo_0192 GtrA family protein YP_004269295.1 KEGG: ace:Acel_0024 FHA domain-containing protein; SPTR: FHA domain containing protein YP_004269296.1 COGs: COG3659 carbohydrate-selective porin; InterPro IPR007049; KEGG: rba:RB9508 hypothetical protein; PFAM: carbohydrate-selective porin OprB; SPTR: uncharacterized protein; PFAM: carbohydrate-selective porin, OprB family YP_004269297.1 KEGG: xau:Xaut_3412 NapD-like protein; SPTR: NapD-like protein YP_004269298.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: plm:Plim_0789 sulfatase; PFAM: Sulfatase; SPTR: Aryl-sulfate sulphohydrolase; PFAM: Sulfatase YP_004269299.1 KEGG: plm:Plim_0655 pericardin like protein; SPTR: Pericardin like protein YP_004269300.1 InterPro IPR011944; KEGG: psl:Psta_2219 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein YP_004269301.1 InterPro IPR012902; KEGG: plm:Plim_0377 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269302.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; KEGG: acp:A2cp1_1272 aldehyde dehydrogenase; SPTR: aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase family YP_004269303.1 InterPro IPR022269: IPR006626; KEGG: swp:swp_1937 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: hypothetical protein-containing protein; Conserved hypothetical protein CHP03806, HNE0200 family; PFAM: Planctomycete cytochrome C; TIGRFAM: hypothetical protein-containing protein; hypothetical protein (two copies); conserved hypothetical protein, HNE_0200 family YP_004269304.1 COGs: COG4539 membrane protein; KEGG: kko:Kkor_2083 protein of unknown function DUF962; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF962) YP_004269305.1 KEGG: dfe:Dfer_2611 protein of unknown function DUF81; SPTR: uncharacterized protein YP_004269306.1 KEGG: xac:XAC2194 hypothetical protein; SPTR: uncharacterized protein YP_004269307.1 InterPro IPR006311: IPR010869; KEGG: rba:RB2697 sulfatase; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004269308.1 InterPro IPR011444; KEGG: rba:RB2693 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004269309.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_01216 arylsulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: arylsulfatase; PFAM: Sulfatase YP_004269310.1 KEGG: rpf:Rpic12D_3846 transcriptional regulator, MarR family; SPTR: MarR family transcriptional regulator YP_004269311.1 KEGG: rba:RB5280 extracellular sucrase; SPTR: Similar to extracellular sucrase; PFAM: glycosyl hydrolases family 43 YP_004269312.1 KEGG: psa:PST_4141 hypothetical protein; SPTR: uncharacterized protein YP_004269313.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_14748 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004269314.1 KEGG: rcm:A1E_04425 ATP-dependent RNA helicase RhlE; SPTR: PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (RhlE) YP_004269315.1 COGs: COG1859 RNA:NAD 2'-phosphotransferase; HAMAP: RNA 2'-phosphotransferase; InterPro IPR002745; KEGG: btk:BT9727_2777 RNA 2'-phosphotransferase; PFAM: phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase; PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family YP_004269316.1 COGs: COG2308 conserved hypothetical protein; InterPro IPR007297: IPR007302; KEGG: psl:Psta_2850 protein of unknown function DUF404; PFAM: protein of unknown function DUF404, bacteria N-terminal; protein of unknown function DUF407; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407) YP_004269317.1 COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: psl:Psta_2849 protein of unknown function DUF403; PFAM: protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; PFAM: Bacterial domain of unknown function (DUF403) YP_004269318.1 COGs: COG1305 transglutaminase-like protein; InterPro IPR002931: IPR013589; KEGG: tgr:Tgr7_1014 transglutaminase domain protein; PFAM: transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: transglutaminase-like; SPTR: transglutaminase domain protein; PFAM: transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region YP_004269319.1 COGs: COG2308 conserved hypothetical protein; InterPro IPR007297: IPR007302: IPR007296; KEGG: psl:Psta_2848 protein of unknown function DUF404; PFAM: protein of unknown function DUF404, bacteria N-terminal; protein of unknown function DUF407; protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF404); Domain of unknown function (DUF407) YP_004269320.1 COGs: COG1305 transglutaminase-like protein; InterPro IPR002931: IPR013589; KEGG: plm:Plim_1494 transglutaminase domain protein; PFAM: Bacterial transglutaminase-like, N-terminal; transglutaminase-like; SMART: transglutaminase-like; SPTR: uncharacterized protein; PFAM: transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region YP_004269321.1 KEGG: bfo:BRAFLDRAFT_128658 hypothetical protein; SPTR: uncharacterized protein YP_004269322.1 KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit YP_004269323.1 InterPro IPR001547; KEGG: cai:Caci_6685 cellulose-binding family II; PFAM: glycoside hydrolase, family 5; SPTR: glycoside hydrolase family 5; PFAM: cellulase (glycosyl hydrolase family 5) YP_004269324.1 KEGG: rba:RB11062 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3124) YP_004269325.1 KEGG: plm:Plim_3579 hypothetical protein; SPTR: uncharacterized protein YP_004269326.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: nwi:Nwi_0833 cobyrinic acid a,c-diamide synthase; SPTR: cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004269327.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: psl:Psta_0461 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein; PFAM: Rhodanese-like domain YP_004269328.1 KEGG: vsp:VS_3000 tRNA (uracil-5-)-methyltransferase; SPTR: Nodulation ABC transporter NodI YP_004269329.1 KEGG: tcu:Tcur_3760 UBA/ThiF-type NAD/FAD binding protein; SPTR: UBA/THIF-type NAD/FAD binding protein YP_004269330.1 KEGG: sbi:SORBI_02g033470 hypothetical protein; SPTR: uncharacterized protein Sb02g033470 YP_004269331.1 KEGG: psb:Psyr_3730 hypothetical protein; SPTR: uncharacterized protein YP_004269332.1 KEGG: pol:Bpro_0004 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2075) YP_004269333.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR004396: IPR002917: IPR013029; KEGG: plm:Plim_1659 GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: Probable GTP-binding protein; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004269334.1 InterPro IPR005135; KEGG: coc:Coch_1119 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase family YP_004269335.1 COGs: COG1043 acyl-(acyl carrier protein); InterPro IPR010137: IPR001451; KEGG: syf:Synpcc7942_2371 UDP-N-acetylglucosamine acyltransferase; PRIAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:acyl-[acyl-carrier-protein]--UDP-N-acetylgluco samineo-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004269336.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: plm:Plim_1127 cell cycle protein; PFAM: cell cycle protein; SPTR: cell cycle protein; PFAM: cell cycle protein YP_004269337.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB12089 iduronate-2-sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase YP_004269338.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB10612 iduronate-2-sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase YP_004269339.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_15418 heparan N-sulfatase; PFAM: Sulfatase; SPTR: Heparan N-sulfatase; PFAM: Sulfatase YP_004269340.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR019734: IPR017442; KEGG: plm:Plim_3456 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004269341.1 KEGG: mbr:MONBRDRAFT_33793 hypothetical protein; SPTR: uncharacterized protein YP_004269342.1 InterPro IPR002035; KEGG: psl:Psta_1809 von Willebrand factor A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor A; PFAM: von Willebrand factor A domain YP_004269343.1 KEGG: psl:Psta_1808 hypothetical protein; SPTR: uncharacterized protein YP_004269344.1 KEGG: psl:Psta_1807 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cna protein B-type domain YP_004269345.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269346.1 COGs: COG1502 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: rba:RB9533 cardiolipin synthase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; SPTR: Cardiolipin synthase; PFAM: phospholipase D Active site motif YP_004269347.1 KEGG: cwo:Cwoe_2570 hypothetical protein YP_004269348.1 KEGG: tet:TTHERM_01435680 hypothetical protein; SPTR: uncharacterized protein YP_004269350.1 KEGG: rcu:RCOM_1997840 hypothetical protein; SPTR: uncharacterized protein YP_004269351.1 KEGG: vap:Vapar_4524 hypothetical protein; SPTR: uncharacterized protein YP_004269352.1 KEGG: pno:SNOG_14250 hypothetical protein; SPTR: 3-hydroxyacyl-CoA dehydrogenase type-2 YP_004269354.1 KEGG: psl:Psta_0862 hypothetical protein; SPTR: uncharacterized protein; PFAM: prolyl oligopeptidase family YP_004269355.1 InterPro IPR005079; KEGG: scl:sce6990 hypothetical protein; PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: uncharacterized protein; PFAM: acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_004269356.1 KEGG: sak:SAK_0560 VanZ family protein; SPTR: uncharacterized protein gbs0506 YP_004269357.1 KEGG: ant:Arnit_0442 anion transporter; SPTR: Cdc2 cyclin-dependent kinase YP_004269358.1 InterPro IPR018958; KEGG: btb:BMB171_C0806 hypothetical protein; PFAM: cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR: SMI1 / KNR4; PFAM: SMI1 / KNR4 family YP_004269359.1 KEGG: cme:CML153C hypothetical protein; SPTR: Coiled-coil protein YP_004269360.1 KEGG: psl:Psta_1057 protein of unknown function DUF1568; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004269361.1 KEGG: ccb:Clocel_1136 hypothetical protein; SPTR: uncharacterized protein YP_004269362.1 COGs: COG0657 esterase/lipase; InterPro IPR002018; KEGG: psl:Psta_2514 alpha/beta hydrolase fold-3 domain protein; PFAM: carboxylesterase, type B; SPTR: alpha/beta hydrolase fold-3 domain protein; PFAM: prolyl oligopeptidase family; TAP-like protein; alpha/beta hydrolase fold YP_004269363.1 KEGG: plm:Plim_2943 pyrrolo-quinoline quinone; SPTR: uncharacterized protein YP_004269364.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004269365.1 COGs: COG0657 esterase/lipase; KEGG: rba:RB7907 lipase; SPTR: Probable lipase; PFAM: alpha/beta hydrolase fold YP_004269366.1 InterPro IPR000253; KEGG: psl:Psta_1812 forkhead-associated protein; PFAM: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004269367.1 COGs: COG3515 conserved hypothetical protein; InterPro IPR017740: IPR010657; KEGG: azl:AZL_017860 ImpA-related N-terminal protein; PFAM: ImpA, N-terminal; SPTR: ImpA-related N-terminal protein; TIGRFAM: type VI secretion system-associated, ImpA; PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, ImpA family YP_004269368.1 COGs: COG3516 conserved hypothetical protein; InterPro IPR008312; KEGG: azl:AZL_017870 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028301; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised conserved protein UCP028301; PFAM: protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family YP_004269369.1 COGs: COG3517 conserved hypothetical protein; InterPro IPR010269; KEGG: acr:Acry_3072 hypothetical protein; PFAM: protein of unknown function DUF877; SPTR: uncharacterized protein; TIGRFAM: protein of unknown function DUF877; PFAM: protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family YP_004269370.1 COGs: COG3517 conserved hypothetical protein; InterPro IPR010269; KEGG: ttu:TERTU_1653 type VI secretion protein, EvpB/family; PFAM: protein of unknown function DUF877; SPTR: type VI secretion protein, EvpB/family; TIGRFAM: protein of unknown function DUF877; PFAM: protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family YP_004269371.1 COGs: COG4455 protein of avirulence locus involved in temperature-dependent protein secretion; InterPro IPR009211; KEGG: azl:AZL_017900 SciE type virulence protein; PFAM: virulence protein, SciE type; SPTR: SciE type virulence protein; PFAM: ImpE protein YP_004269372.1 COGs: COG3518 conserved hypothetical protein; InterPro IPR017737: IPR007048; KEGG: ttu:TERTU_1652 type VI secretion system lysozyme-related protein; PFAM: GPW/gp25; SPTR: type VI secretion system lysozyme-related protein; TIGRFAM: type VI secretion system, lysozyme-related; PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein YP_004269373.1 COGs: COG3519 conserved hypothetical protein; InterPro IPR010272; KEGG: azl:AZL_017920 hypothetical protein; PFAM: type VI secretion system, VCA0110; SPTR: Uncharacterized protein conserved in bacteria; TIGRFAM: type VI secretion system, VCA0110; PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family YP_004269374.1 COGs: COG3520 conserved hypothetical protein; InterPro IPR010732; KEGG: azl:AZL_017930 hypothetical protein; PFAM: protein of unknown function DUF1305; SPTR: uncharacterized protein; TIGRFAM: protein of unknown function DUF1305; PFAM: protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family YP_004269375.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR017729: IPR003593: IPR004176: IPR003959: IPR 013093: IPR019489; KEGG: azl:AZL_017820 chaperone protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA, central region:Clp, N terminal:Clp, N terminal; TIGRFAM: ATPase, type VI secretion system, ClpV1; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: type VI secretion ATPase, ClpV1 family YP_004269376.1 COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR017728: IPR008514; KEGG: cvi:CV_3977 hypothetical protein; PFAM: virulence factor, secretion apparatus; SPTR: uncharacterized protein; TIGRFAM: type VI secretion system effector, Hcp1; PFAM: protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family YP_004269377.1 KEGG: ppu:PP_3089 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF796) YP_004269378.1 COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR008514; KEGG: azo:azo1305 hypothetical protein; PFAM: virulence factor, secretion apparatus; SPTR: cytoplasmic protein; PFAM: protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family YP_004269379.1 InterPro IPR008514; KEGG: pfo:Pfl01_3408 hypothetical protein; PFAM: virulence factor, secretion apparatus; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family YP_004269380.1 COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR008514; KEGG: psp:PSPPH_4224 hypothetical protein; PFAM: virulence factor, secretion apparatus; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family YP_004269381.1 COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR017728: IPR008514; KEGG: cvi:CV_3977 hypothetical protein; PFAM: virulence factor, secretion apparatus; SPTR: type VI secretion system effector, Hcp1 family; TIGRFAM: type VI secretion system effector, Hcp1; PFAM: protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family YP_004269382.1 COGs: COG3501 conserved hypothetical protein; InterPro IPR017847: IPR006533; KEGG: azc:AZC_2592 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Rhs element Vgr protein, subgroup; Rhs element Vgr protein; PFAM: Phage late control gene D protein (GPD); Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein YP_004269383.1 InterPro IPR008727; KEGG: cja:CJA_3676 PaaR motif family; PFAM: PAAR motif; SPTR: PAAR motif family; PFAM: PAAR motif YP_004269384.1 InterPro IPR013217: IPR018773; KEGG: dal:Dalk_1878 methyltransferase type 12; PFAM: methyltransferase regulatory domain, predicted; methyltransferase type 12; SPTR: methyltransferase type 12; PFAM: Predicted methyltransferase regulatory domain; methyltransferase domain YP_004269385.1 KEGG: psl:Psta_1828 hypothetical protein; SPTR: uncharacterized protein YP_004269386.1 COGs: COG3522 conserved hypothetical protein; InterPro IPR010263; KEGG: psl:Psta_1826 type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876, bacterial; SPTR: type VI secretion protein, VC_A0114 family; TIGRFAM: protein of unknown function DUF876, bacterial; PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family YP_004269387.1 COGs: COG3455 conserved hypothetical protein; InterPro IPR017732; KEGG: psl:Psta_1825 hypothetical protein; PFAM: type IV / VI secretion system, DotU; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family YP_004269388.1 KEGG: psl:Psta_1824 hypothetical protein; SPTR: uncharacterized protein YP_004269389.1 KEGG: rba:RB5 signal peptide; SPTR: uncharacterized protein YP_004269390.1 InterPro IPR008462; KEGG: rba:RB10934 hypothetical protein; PFAM: CsbD-like; SPTR: CsbD family protein; PFAM: CsbD-like YP_004269391.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: gvi:glr0420 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Glr0420 protein; PFAM: short chain dehydrogenase YP_004269392.1 KEGG: nph:NP0834A pH adaptation potassium efflux system protein B 2; sodium/hydrogen antiporter subunit YP_004269393.1 HAMAP: protein of unknown function DUF1328; InterPro IPR009760; KEGG: pmy:Pmen_0080 hypothetical protein; PFAM: protein of unknown function DUF1328; SPTR: UPF0391 membrane protein Pmen_0080; PFAM: protein of unknown function (DUF1328) YP_004269394.1 COGs: COG0401 conserved hypothetical protein; InterPro IPR000612; KEGG: nhl:Nhal_1572 protein of unknown function UPF0057; PFAM: Uncharacterised protein family UPF0057; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family UPF0057 YP_004269395.1 KEGG: plm:Plim_3997 hypothetical protein; SPTR: uncharacterized protein; PFAM: GTPase of unknown function YP_004269396.1 COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839: IPR006467: IPR006638: IPR013848: IPR 007197; KEGG: plm:Plim_2207 RNA modification enzyme, MiaB family; PFAM: radical SAM; methylthiotransferase, N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: methylthiotransferase; MiaB-like tRNA modifying enzyme; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family YP_004269397.1 InterPro IPR002645; KEGG: plm:Plim_2208 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; TIGRFAM: anti-anti-sigma factor YP_004269398.1 COGs: COG0125 Thymidylate kinase; HAMAP: Thymidylate kinase; InterPro IPR018094: IPR000062; KEGG: plm:Plim_2209 thymidylate kinase; PFAM: Thymidylate kinase-like; SPTR: Thymidylate kinase; TIGRFAM: Thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_004269399.1 COGs: COG1225 peroxiredoxin; InterPro IPR000866; KEGG: ana:alr3183 bacterioferritin comigratory protein; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PRIAM: peroxiredoxin; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_004269400.1 InterPro IPR000160; KEGG: plm:Plim_1454 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: uncharacterized protein; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004269401.1 COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR004680: IPR006037; KEGG: nhl:Nhal_0864 TrkA-C domain protein; PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; SPTR: TrkA-C, di-and tricarboxylate transporter; PFAM: citrate transporter; TrkA-C domain YP_004269402.1 COGs: COG1218 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR006239: IPR000760; KEGG: rmr:Rmar_2420 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; SPTR: 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase HAL2; PFAM: inositol monophosphatase family; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, HAL2 family YP_004269403.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sus:acid_4635 glycosyl transferase family protein; PFAM: glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: glycosyl transferase family 2 YP_004269404.1 KEGG: mif:Metin_0259 protein of unknown function DUF2304; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2304) YP_004269405.1 KEGG: tgo:TGME49_071780 hypothetical protein; SPTR: uncharacterized protein YP_004269406.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027: IPR001678; KEGG: plm:Plim_1107 sun protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; SPTR: Sun protein; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB YP_004269407.1 COGs: COG1363 cellulase M and related protein; KEGG: tcx:Tcr_0276 hypothetical protein; SPTR: uncharacterized protein YP_004269408.1 InterPro IPR010496; KEGG: plm:Plim_2872 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004269409.1 COGs: COG0402 cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: plm:Plim_3188 amidohydrolase; PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Probable chlorohydrolase; PFAM: Amidohydrolase family YP_004269410.1 InterPro IPR000182; KEGG: plm:Plim_0337 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: acetyltransferase (GNAT) family YP_004269411.1 KEGG: rba:RB1994 hypothetical protein; SPTR: uncharacterized protein YP_004269412.1 COGs: COG3217 Uncharacterized Fe-S protein; InterPro IPR005303; KEGG: ava:Ava_0122 MOSC; PFAM: MOSC, N-terminal beta barrel; SPTR: MOSC; PFAM: MOSC N-terminal beta barrel domain; MOSC domain YP_004269413.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: tmt:Tmath_1010 Appr-1-p processing domain protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: uncharacterized protein; PFAM: Macro domain YP_004269414.1 COGs: COG0057 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR006424: IPR020828: IPR020829; KEGG: plm:Plim_0647 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; manually curated; PFAM: glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase YP_004269415.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: plm:Plim_1910 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Response regulator receiver domain YP_004269416.1 COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; InterPro IPR001789: IPR000673; KEGG: plm:Plim_1911 protein-glutamate methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component CheB methylesterase; PFAM: CheB methylesterase; Response regulator receiver domain YP_004269417.1 COGs: COG1352 methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: plm:Plim_1912 protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase, CheR-type; PRIAM: protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: protein-glutamate O-methyltransferase; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_004269418.1 KEGG: plm:Plim_0653 hypothetical protein; SPTR: uncharacterized protein YP_004269419.1 COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: npu:Npun_R5645 hypothetical protein; PFAM: protein of unknown function DUF427; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF427) YP_004269420.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: plm:Plim_1130 cell cycle protein; PFAM: cell cycle protein; SPTR: Bacterial cell division membrane protein; PFAM: cell cycle protein YP_004269421.1 COGs: COG0597 Lipoprotein signal peptidase; HAMAP: peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: psl:Psta_0919 lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; SPTR: Lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_004269422.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: nhl:Nhal_2654 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-related; SPTR: stage II sporulation E family protein; PFAM: stage II sporulation protein E (SpoIIE) YP_004269423.1 KEGG: plm:Plim_4110 O-antigen polymerase; SPTR: O-antigen polymerase; PFAM: O-antigen ligase YP_004269424.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: plm:Plim_4111 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004269425.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715: IPR019554; KEGG: plm:Plim_4112 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: polysaccharide export protein; PFAM: polysaccharide biosynthesis/export protein; SLBB domain YP_004269426.1 KEGG: rba:RB5396 hypothetical protein; SPTR: uncharacterized protein YP_004269427.1 InterPro IPR012902; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269428.1 InterPro IPR000537; KEGG: plm:Plim_2631 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: uncharacterized protein; PFAM: UbiA prenyltransferase family YP_004269429.1 COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: psl:Psta_0018 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: Probable competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 YP_004269430.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: plm:Plim_1682 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Probable hexulose-6-phosphate isomerase; PFAM: Xylose isomerase-like TIM barrel YP_004269431.1 COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: plm:Plim_0069 anion transporter; PFAM: Sodium/sulfate symporter; SPTR: Anion transporter; TIGRFAM: Sodium/sulfate symporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter YP_004269432.1 KEGG: mrb:Mrub_0176 4-hydroxybenzoate polyprenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase YP_004269433.1 InterPro IPR002781; KEGG: pth:PTH_2261 permease; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004269434.1 COGs: COG0321 Lipoate-protein ligase B; KEGG: xtr:779684 lipoyl(octanoyl) transferase 2; SPTR: Lipoate-protein ligase B YP_004269435.1 COGs: COG0320 Lipoate synthase; HAMAP: Lipoate synthase; InterPro IPR003698: IPR006638: IPR007197; KEGG: plm:Plim_3382 lipoic acid synthetase; PFAM: radical SAM; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: Lipoate synthase; PFAM: radical SAM superfamily; TIGRFAM: lipoate synthase YP_004269436.1 InterPro IPR000089; KEGG: swi:Swit_0780 branched-chain alpha-keto acid dehydrogenase E2 component; PFAM: Biotin/lipoyl attachment; SPTR: Branched-chain alpha-keto acid dehydrogenase E2 component YP_004269437.1 COGs: COG0026 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875: IPR003135; KEGG: sus:acid_5043 phosphoribosylaminoimidazole carboxylase; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_004269438.1 COGs: COG0041 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: psl:Psta_0493 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004269439.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: plm:Plim_3217 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: ATP-binding region ATPase domain protein; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; protein of unknown function (DUF3365) YP_004269440.1 InterPro IPR011701; KEGG: plm:Plim_0799 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004269441.1 KEGG: plm:Plim_3738 hypothetical protein; SPTR: uncharacterized protein; PFAM: Dynamin family YP_004269442.1 KEGG: mru:mru_0388 phosphoserine phosphatase SerB; SPTR: NF-180 YP_004269443.1 InterPro IPR011971: IPR019052; KEGG: rba:RB4347 hypothetical protein; PFAM: protein of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein YP_004269444.1 KEGG: nar:Saro_3186 hypothetical protein; SPTR: uncharacterized protein YP_004269445.1 InterPro IPR005182; KEGG: rba:RB12236 hypothetical protein; PFAM: protein of unknown function DUF304, transmembrane flanked domain, bacterial; SPTR: uncharacterized protein; PFAM: Bacterial membrane flanked domain YP_004269446.1 KEGG: rru:Rru_A3334 ammonia monooxygenase; SPTR: uncharacterized protein YP_004269447.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: rba:RB658 permease; PFAM: Uncharacterised protein family UPF0118; SPTR: Predicted permease; PFAM: Domain of unknown function DUF20 YP_004269449.1 KEGG: mno:Mnod_4148 hypothetical protein; SPTR: uncharacterized protein YP_004269450.1 COGs: COG0492 thioredoxin reductase; InterPro IPR013027; KEGG: cag:Cagg_0128 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004269451.1 KEGG: rba:RB4436 signal peptide; SPTR: uncharacterized protein; PFAM: transglycosylase associated protein YP_004269452.1 COGs: COG0523 GTPase (G3E family); InterPro IPR003495; KEGG: plm:Plim_2842 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: uncharacterized protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain YP_004269453.1 KEGG: plm:Plim_3347 hypothetical protein; SPTR: uncharacterized protein YP_004269454.1 COGs: COG0279 phosphoheptose isomerase; InterPro IPR001347; KEGG: plm:Plim_1528 sugar isomerase (SIS); PFAM: Sugar isomerase (SIS); SPTR: Sugar isomerase (SIS); PFAM: SIS domain YP_004269455.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR013428: IPR013427: IPR003088; KEGG: plm:Plim_1407 heme-binding protein; PFAM: cytochrome C, class I; SPTR: uncharacterized protein; TIGRFAM: Haem-binding domain, ; membrane-bound dehydrogenase; PFAM: cytochrome C; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004269456.1 KEGG: tsi:TSIB_0325 beta-agarase (extracellular); SPTR: uncharacterized protein YP_004269457.1 COGs: COG1760 L-serine deaminase; InterPro IPR004644: IPR005131: IPR005130; KEGG: rba:RB8779 L-serine dehydratase; PFAM: serine dehydratase-like, subunit alpha; serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form YP_004269458.1 InterPro IPR010496; KEGG: psl:Psta_3759 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: large multi-functional protein; PFAM: Domain of Unknown Function (DUF1080) YP_004269459.1 COGs: COG0657 esterase/lipase; KEGG: sth:STH2125 lipase; SPTR: Lipase/esterase; PFAM: alpha/beta hydrolase fold YP_004269460.1 COGs: COG0818 diacylglycerol kinase; InterPro IPR000829; KEGG: bcq:BCQ_4088 diacylglycerol kinase; PFAM: diacylglycerol kinase, prokaryotic; SPTR: diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase YP_004269461.1 COGs: COG0364 glucose-6-phosphate 1-dehydrogenase; InterPro IPR001282; KEGG: plm:Plim_1200 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: glucose-6-phosphate dehydrogenase; SPTR: glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, NAD binding domain; glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_004269462.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: plm:Plim_1879 sulfatase; PFAM: Sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004269463.1 KEGG: nfi:NFIA_032680 alpha-glucosidase; SPTR: polyprotein coding for replicases including RNA-dependent RNA polymerase region YP_004269464.1 KEGG: zma:100281521 ATP-dependent RNA helicase DDX23; SPTR: uncharacterized protein YP_004269465.1 KEGG: ape:APE_1087.1 50S ribosomal protein L31e; SPTR: 50S ribosomal protein L31e YP_004269466.1 KEGG: hor:Hore_07440 PBS lyase heat domain protein repeat-containing protein; SPTR: PBS lyase HEAT domain protein repeat-containing protein YP_004269467.1 KEGG: cya:CYA_2519 RecF/RecN/SMC domain-containing protein; SPTR: RecF/RecN/SMC N terminal domain protein YP_004269468.1 KEGG: psl:Psta_0633 hypothetical protein; SPTR: uncharacterized protein YP_004269469.1 KEGG: plm:Plim_2701 hypothetical protein; SPTR: uncharacterized protein YP_004269470.1 COGs: COG4956 integral membrane protein (PIN domain superfamily); InterPro IPR002792; KEGG: plm:Plim_1298 PilT protein domain protein; PFAM: deoxyribonuclease/rho motif-related TRAM; SPTR: uncharacterized protein; PFAM: TRAM domain YP_004269471.1 KEGG: plm:Plim_3179 hypothetical protein; SPTR: uncharacterized protein YP_004269472.1 KEGG: psl:Psta_1131 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004269473.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterPro IPR003661: IPR003594: IPR001789; KEGG: mxa:MXAN_0229 sensor histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Sensor histidine kinase/response regulator; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004269474.1 COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR003593: IPR014774; KEGG: met:M446_4712 non-specific serine/threonine protein kinase; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; PRIAM: non-specific serine/threonine protein kinase; SMART: ATPase, AAA+ type, core; SPTR: non-specific serine/threonine protein kinase; PFAM: KaiC YP_004269475.1 COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: plm:Plim_3793 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein; PFAM: Demethylmenaquinone methyltransferase YP_004269476.1 COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: ade:Adeh_2977 hypothetical protein; PFAM: lactate utilization protein B/C; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556 YP_004269477.1 COGs: COG2358 TRAP-type uncharacterized transporter periplasmic component; KEGG: mxa:MXAN_2274 TRAP transporter solute receptor TAXI family protein; SPTR: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family YP_004269478.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sta:STHERM_c17390 heat shock protein; PFAM: heat shock protein Hsp20; SPTR: Hsp20; PFAM: Hsp20/alpha crystallin family YP_004269479.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: plm:Plim_1174 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Small heat shock protein (class I); PFAM: Hsp20/alpha crystallin family YP_004269480.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: plm:Plim_1175 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: heat shock protein, HSP20 family; PFAM: Hsp20/alpha crystallin family YP_004269481.1 InterPro IPR002048: IPR018248; KEGG: psl:Psta_4011 signal transduction protein with EFhand domain; PFAM: EF-Hand, Calmodulin; SPTR: immediate early protein YP_004269482.1 KEGG: plm:Plim_0248 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: Clp protease YP_004269483.1 KEGG: cnb:CNBK0660 hypothetical protein; SPTR: uncharacterized protein YP_004269484.1 KEGG: psl:Psta_3954 tetratricopeptide domain protein; SPTR: hypothetical protein YP_004269485.1 KEGG: rcu:RCOM_1153030 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, SPTR: protoporphyrinogen oxidase YP_004269486.1 COGs: COG0316 conserved hypothetical protein; InterPro IPR016092: IPR000361; KEGG: plm:Plim_2978 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; SPTR: Iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_004269487.1 COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596: IPR003714; KEGG: plm:Plim_3373 PhoH family protein; PFAM: PhoH-like protein; SMART: nucleotide binding protein, PINc; SPTR: PhoH family protein; PFAM: PhoH-like protein YP_004269488.1 KEGG: vap:Vapar_5664 protein of unknown function DUF1486; SPTR: uncharacterized protein YP_004269489.1 KEGG: rba:RB87 signal peptide; SPTR: uncharacterized protein YP_004269490.1 InterPro IPR005358; KEGG: plm:Plim_0830 protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004269491.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR017858: IPR002779; KEGG: plm:Plim_3905 ATP/cobalamin adenosyltransferase; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_004269492.1 COGs: COG0657 esterase/lipase; KEGG: psl:Psta_0748 alpha/beta hydrolase fold-3 domain protein; SPTR: alpha/beta hydrolase fold-3 domain protein; PFAM: alpha/beta hydrolase fold YP_004269493.1 KEGG: plm:Plim_2722 hypothetical protein; SPTR: uncharacterized protein YP_004269494.1 KEGG: cpe:CPE2321 hypothetical protein; SPTR: uncharacterized protein YP_004269495.1 COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: rba:RB3431 ATP-dependent protease La 1; PFAM: peptidase S16, lon N-terminal; SMART: peptidase S16, lon N-terminal; SPTR: Probable ATP-dependent protease La 1; PFAM: ATP-dependent protease La (LON) domain YP_004269496.1 KEGG: mmu:238568 serine (or cysteine) peptidase inhibitor, clade B, member 6d; SPTR: MCG20280 YP_004269497.1 InterPro IPR013424: IPR011449; KEGG: jan:Jann_2673 hypothetical protein; PFAM: PEP-CTERM bacterial; SPTR: uncharacterized protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM exosortase interaction domain YP_004269499.1 InterPro IPR013043: IPR013042: IPR013039; KEGG: rba:RB6574 hypothetical protein; PFAM: hypothetical protein; protein of unknown function DUF1592; protein of unknown function DUF1595; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1588); protein of unknown function (DUF1587); protein of unknown function (DUF1592); protein of unknown function (DUF1595); protein of unknown function (DUF1585) YP_004269500.1 InterPro IPR006311: IPR011447; KEGG: rba:RB6572 signal peptide; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004269501.1 KEGG: tra:Trad_0258 hypothetical protein; SPTR: uncharacterized protein YP_004269502.1 KEGG: psl:Psta_1311 hypothetical protein; SPTR: uncharacterized protein YP_004269503.1 COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: tgr:Tgr7_3147 conserved hypothetical globin-like protein; PFAM: Globin, truncated bacterial-like; SPTR: Conserved hypothetical globin-like protein; PFAM: Bacterial-like globin YP_004269504.1 COGs: COG0397 conserved hypothetical protein; HAMAP: UPF0061 protein ydiU; InterPro IPR003846; KEGG: gka:GK0436 hypothetical protein; PFAM: Uncharacterised protein family UPF0061; SPTR: UPF0061 protein GK0436; PFAM: Uncharacterized ACR, YdiU/UPF0061 family YP_004269505.1 KEGG: plm:Plim_0861 hypothetical protein; SPTR: uncharacterized protein YP_004269506.1 KEGG: cci:CC1G_03149 hypothetical protein; SPTR: uncharacterized protein YP_004269507.1 InterPro IPR013096; KEGG: psl:Psta_1676 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; PFAM: Cupin domain YP_004269508.1 KEGG: plm:Plim_2023 hypothetical protein; SPTR: uncharacterized protein YP_004269509.1 InterPro IPR005135; KEGG: fra:Francci3_3661 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: endonuclease/exonuclease/phosphatase family YP_004269510.1 InterPro IPR006311: IPR010869; KEGG: plm:Plim_2164 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004269511.1 InterPro IPR011444; KEGG: psl:Psta_0182 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004269512.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transporter permease; InterPro IPR000515; KEGG: plm:Plim_2867 binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: Binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporter inner membrane component YP_004269513.1 COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: sus:acid_6307 DNA-3-methyladenine glycosylase II; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: Probable DNA-3-methyladenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_004269514.1 KEGG: spu:589120 hypothetical LOC589120; SPTR: uncharacterized protein YP_004269515.1 KEGG: plm:Plim_4217 hypothetical protein; SPTR: uncharacterized protein YP_004269516.1 KEGG: coc:Coch_1842 acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004269517.1 KEGG: sty:HCM2.0066c hypothetical protein; SPTR: uncharacterized protein HCM2.0066c YP_004269518.1 COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR004624: IPR013987: IPR013988; KEGG: rba:RB11194 PhnA protein; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal; SPTR: PhnA protein; TIGRFAM: PhnA protein; PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA YP_004269519.1 KEGG: plm:Plim_0519 hypothetical protein; SPTR: uncharacterized protein YP_004269520.1 COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR001967; KEGG: psl:Psta_1647 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase A; PRIAM: serine-type D-Ala-D-Ala carboxypeptidase; SPTR: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: D-alanyl-D-alanine carboxypeptidase YP_004269521.1 KEGG: pct:PC1_2058 hypothetical protein; SPTR: uncharacterized protein YP_004269522.1 KEGG: psl:Psta_2654 von Willebrand factor A; SPTR: von Willebrand factor A YP_004269523.1 KEGG: plm:Plim_4234 hypothetical protein; SPTR: uncharacterized protein YP_004269524.1 InterPro IPR012902; KEGG: plm:Plim_4235 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269525.1 COGs: COG1609 transcriptional regulators; InterPro IPR018060: IPR000005; KEGG: rba:RB522 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004269526.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269527.1 KEGG: sde:Sde_3709 hypothetical protein; SPTR: carbohydrate-binding protein YP_004269528.1 KEGG: plm:Plim_3725 hypothetical protein; SPTR: uncharacterized protein YP_004269529.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269530.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269531.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269532.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: plm:Plim_1639 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Probable response regulatory protein (AtoC); PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004269533.1 COGs: COG0159 tryptophan synthase subunit alpha; HAMAP: tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: plm:Plim_3190 tryptophan synthase, subunit alpha; PFAM: tryptophan synthase, alpha chain; PRIAM: tryptophan synthase; SPTR: tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha chain; PFAM: tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, subunit alpha YP_004269534.1 COGs: COG0133 tryptophan synthase beta chain; HAMAP: tryptophan synthase beta chain; InterPro IPR006654: IPR001926; KEGG: plm:Plim_3191 tryptophan synthase subunit beta; PFAM: pyridoxal phosphate-dependent enzyme subunit beta; PRIAM: tryptophan synthase; SPTR: tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase subunit beta YP_004269535.1 KEGG: ach:Achl_1494 peptidase M1 membrane alanine aminopeptidase; SPTR: peptidase M1 membrane alanine aminopeptidase YP_004269536.1 COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: psl:Psta_3300 magnesium protoporphyrin chelatase, SPTR: Magnesium protoporphyrin chelatase YP_004269537.1 KEGG: cyh:Cyan8802_2809 hypothetical protein; SPTR: transforming growth factor induced protein; PFAM: SOUL heme-binding protein YP_004269538.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154; KEGG: plm:Plim_4017 alcohol dehydrogenase zinc-binding domain protein; PFAM: alcohol dehydrogenase GroES-like; SPTR: alcohol dehydrogenase zinc-binding domain protein; PFAM: alcohol dehydrogenase GroES-like domain YP_004269539.1 InterPro IPR006311; KEGG: plm:Plim_4022 hypothetical protein; SPTR: uncharacterized protein YP_004269540.1 COGs: COG0350 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: msm:MSMEG_4928 methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004269541.1 KEGG: plm:Plim_0822 hypothetical protein; SPTR: uncharacterized protein YP_004269542.1 KEGG: plm:Plim_4224 sulfate transporter/antisigma-factor antagonist STAS; SPTR: uncharacterized protein; PFAM: STAS domain YP_004269543.1 KEGG: rxy:Rxyl_0343 methyltransferase type 12; SPTR: methyltransferase type 12 YP_004269544.1 SPTR: uncharacterized protein YP_004269545.1 KEGG: plm:Plim_3840 hypothetical protein; SPTR: uncharacterized protein YP_004269546.1 KEGG: plm:Plim_3841 hypothetical protein; SPTR: uncharacterized protein YP_004269547.1 COGs: COG0225 peptide methionine sulfoxide reductase; HAMAP: peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase msrB; InterPro IPR002569: IPR002579; KEGG: dsa:Desal_0965 methionine-R-sulfoxide reductase; PFAM: methionine sulphoxide reductase B; peptide methionine sulphoxide reductase MsrA; PRIAM: peptide-methionine (S)-S-oxide reductase., peptide-methionine (R)-S-oxide reductase; SPTR: methionine-R-sulfoxide reductase; TIGRFAM: peptide methionine sulphoxide reductase MsrA; methionine sulphoxide reductase B; PFAM: SelR domain; peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase YP_004269548.1 InterPro IPR010496; KEGG: rba:RB1854 hypothetical protein; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004269549.1 COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR020621: IPR013820: IPR013115; KEGG: plm:Plim_2331 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase YP_004269550.1 COGs: COG3746 phosphate-selective porin; InterPro IPR010870; KEGG: rba:RB195 polyphosphate-selective porin O; PFAM: phosphate-selective porin O/P; SPTR: Probable polyphosphate-selective porin O; PFAM: phosphate-selective porin O and P YP_004269551.1 KEGG: rba:RB193 signal peptide; SPTR: uncharacterized protein YP_004269552.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: plm:Plim_0577 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: L-iditol 2-dehydrogenase; SPTR: alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_004269553.1 KEGG: saq:Sare_1632 chitin-binding domain-containing protein; SPTR: YqgS YP_004269554.1 KEGG: bcb:BCB4264_A0378 hypothetical protein; SPTR: uncharacterized protein YP_004269556.1 KEGG: ypb:YPTS_3457 flagellar hook-length control protein; SPTR: Predicted protein YP_004269557.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: cpi:Cpin_2602 sulfatase; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004269558.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: rba:RB1411 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; PRIAM: dihydrodipicolinate synthase; SPTR: Probable dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase family YP_004269559.1 KEGG: pti:PHATR_43987 hypothetical protein; SPTR: Predicted protein YP_004269560.1 KEGG: zma:100284190 dihydroflavonol-4-reductase; SPTR: dihydroflavonol-4-reductase YP_004269561.1 KEGG: psl:Psta_4302 hypothetical protein; SPTR: uncharacterized protein YP_004269562.1 KEGG: plm:Plim_3207 hypothetical protein; SPTR: uncharacterized protein YP_004269563.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_0675 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR-1; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004269565.1 COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: plm:Plim_3304 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel YP_004269566.1 KEGG: ske:Sked_34850 protein of unknown function (DUF2599); SPTR: uncharacterized protein; PFAM: Bacterial SH3 domain YP_004269567.1 COGs: COG1866 phosphoenolpyruvate carboxykinase (ATP); HAMAP: phosphoenolpyruvate carboxykinase, ATP-utilising; InterPro IPR001272; KEGG: psl:Psta_2290 phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase, ATP-utilising; PRIAM: phosphoenolpyruvate carboxykinase (ATP); SPTR: phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: phosphoenolpyruvate carboxykinase, ATP-utilising; PFAM: phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP) YP_004269568.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); InterPro IPR002881; KEGG: plm:Plim_0817 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004269569.1 KEGG: gob:Gobs_4301 hypothetical protein; SPTR: uncharacterized protein YP_004269570.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002197; KEGG: plm:Plim_3238 sigma-54 factor interaction domain-containing protein; PFAM: Helix-turn-helix, Fis-type; SPTR: Sigma-54 factor interaction domain-containing protein; PFAM: Bacterial regulatory protein, Fis family YP_004269571.1 COGs: COG1359 conserved hypothetical protein; InterPro IPR007138; KEGG: plm:Plim_3237 antibiotic biosynthesis monooxygenase; PFAM: antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: antibiotic biosynthesis monooxygenase YP_004269572.1 COGs: COG1521 transcriptional regulator protein; HAMAP: type III pantothenate kinase; InterPro IPR004619; KEGG: plm:Plim_3950 transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: transcriptional activator, , Baf family protein; TIGRFAM: Bordetella pertussis Bvg accessory factor; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004269573.1 KEGG: psl:Psta_0754 pyrrolo-quinoline quinone; SPTR: uncharacterized protein YP_004269574.1 KEGG: plm:Plim_2968 hypothetical protein; SPTR: uncharacterized protein YP_004269575.1 InterPro IPR011486; KEGG: rba:RB8345 hypothetical protein; PFAM: protein of unknown function DUF1597; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1597) YP_004269576.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390: IPR003593: IPR013822: IPR000897; KEGG: plm:Plim_4170 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004269577.1 KEGG: psl:Psta_2736 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004269578.1 COGs: COG1199 Rad3-related DNA helicase; InterPro IPR014001: IPR006554: IPR006555; KEGG: plm:Plim_0188 helicase C2; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; Helicase-like, DEXD box c2 type; SPTR: Helicase c2; PFAM: DEAD_2; DEAD/DEAH box helicase YP_004269579.1 COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155: IPR001680: IPR000357; KEGG: plm:Plim_2887 PBS lyase heat domain protein repeat-containing protein; PFAM: HEAT; PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat YP_004269580.1 InterPro IPR002559; KEGG: psl:Psta_0890 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain YP_004269581.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004269582.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004269583.1 KEGG: nar:Saro_3994 transposase; SPTR: transposase and inactivated derivatives-like protein YP_004269584.1 KEGG: dba:Dbac_1698 undecaprenyl-phosphate glucose phosphotransferase; SPTR: undecaprenyl-phosphate glucose phosphotransferase YP_004269585.1 KEGG: abo:ABO_0012 hypothetical protein; SPTR: uncharacterized protein YP_004269586.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_3244 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004269587.1 InterPro IPR002559; KEGG: psl:Psta_0890 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: Probable transposase; PFAM: transposase DDE domain YP_004269588.1 InterPro IPR012902; KEGG: plm:Plim_2888 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269589.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: plm:Plim_2480 processing peptidase; PFAM: peptidase M16, N-terminal; peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Zinc protease; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16) YP_004269590.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: plm:Plim_2479 peptidase M16 domain protein; PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; PRIAM: processing peptidase; SPTR: Hypothetical zinc protease; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16) YP_004269591.1 KEGG: plm:Plim_1500 hypothetical protein; SPTR: uncharacterized protein YP_004269592.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: psl:Psta_1949 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; SPTR: acetoin utilization protein; PFAM: histone deacetylase domain YP_004269593.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_1535 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004269594.1 COGs: COG1048 Aconitase A; InterPro IPR006249: IPR001030: IPR000573; KEGG: plm:Plim_2285 aconitate hydratase 1; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: Aconitate hydratase; SPTR: Aconitate hydratase; TIGRFAM: Aconitase/iron regulatory protein 2; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1 YP_004269595.1 KEGG: psl:Psta_3926 PDZ/DHR/GLGF domain protein; SPTR: Probable serine protease YP_004269596.1 InterPro IPR009875; KEGG: plm:Plim_0624 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: uncharacterized protein; PFAM: PilZ domain YP_004269597.1 COGs: COG3897 methyltransferase; InterPro IPR007848; KEGG: plm:Plim_1383 methyltransferase type 12; PFAM: methyltransferase small; SPTR: methyltransferase type 12; PFAM: methyltransferase YP_004269598.1 KEGG: plm:Plim_3700 hypothetical protein; SPTR: uncharacterized protein YP_004269599.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006225: IPR002942: IPR006145; KEGG: plm:Plim_3699 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_004269600.1 COGs: COG1538 Outer membrane protein; KEGG: plm:Plim_2805 outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004269601.1 COGs: COG1052 lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: bxe:Bxe_A2430 dehydrogenase, D-3-phosphoglycerate dehydrogenase-like; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: phosphoglycerate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase family protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004269602.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: plm:Plim_3442 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: uncharacterized protein; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004269603.1 InterPro IPR005632; KEGG: plm:Plim_0920 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: uncharacterized protein; PFAM: Outer membrane protein (OmpH-like) YP_004269604.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463; KEGG: plm:Plim_0919 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; SPTR: UDP-3-0-acyl N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004269605.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: plm:Plim_0917 oxidoreductase; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004269606.1 COGs: COG2193 Bacterioferritin (cytochrome b1); InterPro IPR002024: IPR008331; KEGG: plm:Plim_3758 bacterioferritin; PFAM: Ferritin/Dps protein; SPTR: Bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin-like domain; TIGRFAM: bacterioferritin YP_004269607.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: rba:RB9076 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Hypothetical ABC transporter ATP-binding protein ybiT; PFAM: ABC transporter YP_004269608.1 COGs: COG4154 Fucose dissimilation pathway protein FucU; InterPro IPR007721; KEGG: plm:Plim_1645 RbsD or FucU transport; PFAM: RbsD/FucU transport; SPTR: RbsD or FucU transport; PFAM: RbsD / FucU transport protein family YP_004269609.1 InterPro IPR007374; KEGG: plm:Plim_1938 protein of unknown function DUF437; PFAM: ASCH domain; SPTR: uncharacterized protein; PFAM: ASCH domain YP_004269610.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR005097; KEGG: plm:Plim_0395 NAD-dependent epimerase/dehydratase; PFAM: saccharopine dehydrogenase / Homospermidine synthase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family YP_004269611.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: plm:Plim_0324 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family YP_004269612.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: tye:THEYE_A0589 hypothetical protein; PFAM: glycosyl transferase, family 39; SPTR: uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004269613.1 COGs: COG3907 PAP2 (acid phosphatase) superfamily protein; InterPro IPR000326; KEGG: glo:Glov_0769 phosphoesterase PA-phosphatase related; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: phosphoesterase PA-phosphatase related; PFAM: PAP2 superfamily YP_004269614.1 InterPro IPR000835; KEGG: psl:Psta_1616 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Probable marR-family transcription regulator; PFAM: MarR family YP_004269615.1 COGs: COG1741 Pirin-related protein; InterPro IPR003829; KEGG: afw:Anae109_2559 pirin domain-containing protein; PFAM: Pirin, N-terminal; SPTR: Pirin family protein; PFAM: Pirin YP_004269616.1 COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: psl:Psta_1614 DoxX family protein; PFAM: DoxX; SPTR: DoxX; PFAM: DoxX YP_004269617.1 COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741; KEGG: plm:Plim_3623 protein of unknown function DUF162; PFAM: lactate utilization protein B/C; SPTR: electron transporter ykgF- 4Fe-4S containing oxidoreductase; PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein YP_004269618.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: plm:Plim_3516 hypothetical protein; SPTR: uncharacterized protein YP_004269619.1 COGs: COG3481 HD-superfamily hydrolase; InterPro IPR006675: IPR003607: IPR004365: IPR006674; KEGG: psl:Psta_4761 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: Nucleic acid-binding protein, ; TIGRFAM: HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004269620.1 COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004143; KEGG: plm:Plim_2597 biotin/lipoate A/B protein ligase; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Lipoate protein ligase; PFAM: Biotin/lipoate A/B protein ligase family YP_004269621.1 COGs: COG1003 glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR020580; KEGG: plm:Plim_2596 glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein, N-terminal; SPTR: glycine dehydrogenase subunit 2; PFAM: glycine cleavage system P-protein YP_004269622.1 COGs: COG0403 glycine cleavage system protein P (pyridoxal-binding) N-terminal domain; HAMAP: glycine dehydrogenase [decarboxylating] subunit 1; InterPro IPR020580; KEGG: plm:Plim_2595 glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein, N-terminal; PRIAM: glycine dehydrogenase (decarboxylating); SPTR: glycine dehydrogenase subunit 1; PFAM: glycine cleavage system P-protein YP_004269623.1 COGs: COG0509 glycine cleavage system protein H (lipoate-binding); HAMAP: glycine cleavage H-protein; InterPro IPR002930: IPR017453; KEGG: plm:Plim_2594 glycine cleavage system protein H; PFAM: glycine cleavage H-protein; SPTR: glycine cleavage system protein H; TIGRFAM: glycine cleavage H-protein, subgroup; PFAM: glycine cleavage H-protein; TIGRFAM: glycine cleavage system protein H YP_004269624.1 COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR004785: IPR003500; KEGG: plm:Plim_2593 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/galactose isomerase; PRIAM: ribose-5-phosphate isomerase; SPTR: ribose 5-phosphate epimerase (Pentose phosphate); TIGRFAM: ribose/galactose isomerase; ribose 5-phosphate isomerase B; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004269625.1 COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: plm:Plim_2592 protein-tyrosine phosphatase, low molecular weight; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: protein-tyrosine phosphatase, low molecular weight; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004269626.1 COGs: COG1218 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR000760; KEGG: plm:Plim_2584 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: uncharacterized protein; PFAM: inositol monophosphatase family YP_004269627.1 InterPro IPR007903; KEGG: bid:Bind_3424 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: uncharacterized protein; PFAM: PRC-barrel domain YP_004269628.1 InterPro IPR008915; KEGG: mrb:Mrub_0613 peptidase M50; PFAM: peptidase M50; SPTR: uncharacterized protein; PFAM: peptidase family M50 YP_004269629.1 KEGG: enc:ECL_03309 flagellar biosynthetic protein FlhB; SPTR: flagellar biosynthetic protein FlhB YP_004269630.1 COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; HAMAP: LL-diaminopimelate aminotransferase; InterPro IPR019942: IPR004839; KEGG: tel:tll2102 L,L-diaminopimelate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: aspartate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase, plant-related; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase YP_004269631.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterPro IPR012754: IPR006592: IPR007080: IPR000722: IPR 007066: IPR007083: IPR007081; KEGG: plm:Plim_0472 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, subunit alpha; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_004269632.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta, bacterial-type; InterPro IPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641; KEGG: plm:Plim_0443 DNA-directed RNA polymerase, subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase subunit beta, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase subunit beta; RNA polymerase Rpb2, domain 2; RNA polymerase subunit beta external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase subunit beta YP_004269633.1 COGs: COG0222 ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; InterPro IPR000206: IPR013823; KEGG: plm:Plim_0442 ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004269634.1 COGs: COG0244 ribosomal protein L10; InterPro IPR001790; KEGG: plm:Plim_0441 ribosomal protein L10-like protein; PFAM: ribosomal protein L10; SPTR: Probable 50S ribosomal protein L10; PFAM: ribosomal protein L10 YP_004269635.1 COGs: COG0081 ribosomal protein L1; InterPro IPR005878: IPR002143; KEGG: plm:Plim_0440 ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004269636.1 COGs: COG0080 ribosomal protein L11; InterPro IPR006519: IPR000911: IPR020784: IPR020783; KEGG: plm:Plim_0439 ribosomal protein L11; PFAM: ribosomal protein L11, C-terminal; ribosomal protein L11, N-terminal; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004269637.1 COGs: COG0250 transcription antiterminator; InterPro IPR001062: IPR006645; KEGG: plm:Plim_0438 transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein, NusG, N-terminal; SMART: transcription antitermination protein, NusG, N-terminal; SPTR: transcription antitermination protein nusG; TIGRFAM: transcription antitermination protein, NusG; PFAM: transcription termination factor nusG; TIGRFAM: transcription termination/antitermination factor NusG YP_004269638.1 InterPro IPR005807: IPR001901; KEGG: plm:Plim_0437 preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; SPTR: uncharacterized protein; TIGRFAM: SecE subunit of protein translocation complex; PFAM: SecE/Sec61-subunit gammas of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004269639.1 HAMAP: ribosomal protein L33; InterPro IPR001705; KEGG: plm:Plim_0436 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004269640.1 COGs: COG0050 GTPase - translation elongation factors; InterPro IPR004541: IPR005225: IPR000795: IPR004161: IPR 004160; KEGG: plm:Plim_0435 translation elongation factor Tu; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004269641.1 InterPro IPR004155; KEGG: plm:Plim_3568 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; SPTR: uncharacterized protein; PFAM: PBS lyase HEAT-like repeat YP_004269642.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_3570 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: pyrrolo-quinoline quinone YP_004269643.1 COGs: COG3153 acetyltransferase; InterPro IPR000182; KEGG: aha:AHA_1411 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: acetyltransferase, GNAT family YP_004269644.1 KEGG: afw:Anae109_4248 hypothetical protein; SPTR: uncharacterized protein YP_004269645.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: hmo:HM1_2362 response regulator receiver modulated serine phosphatase; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-related; SPTR: regulator; PFAM: stage II sporulation protein E (SpoIIE) YP_004269646.1 COGs: COG5285 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: plm:Plim_0673 phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase; SPTR: uncharacterized protein; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004269647.1 KEGG: plm:Plim_3408 hypothetical protein; SPTR: chromosome partition protein YP_004269648.1 COGs: COG3118 thioredoxin; InterPro IPR005746: IPR013766; KEGG: plm:Plim_0243 thioredoxin; PFAM: thioredoxin domain; SPTR: thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin YP_004269649.1 KEGG: plm:Plim_1760 hypothetical protein; SPTR: uncharacterized protein YP_004269650.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607: IPR002376; KEGG: plm:Plim_1759 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: phosphoribosylglycinamide formyltransferase; SPTR: phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_004269651.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: plm:Plim_3297 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Probable beta-hydroxyacyl-ACP dehydratase; PFAM: FabA-like domain YP_004269652.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: psl:Psta_1182 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme YP_004269653.1 COGs: COG3752 membrane protein; InterPro IPR010721; KEGG: hau:Haur_0805 hypothetical protein; PFAM: protein of unknown function DUF1295; SPTR: membrane protein, ; PFAM: protein of unknown function (DUF1295) YP_004269654.1 COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR013216; KEGG: meh:M301_1469 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004269655.1 COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR003333; KEGG: sml:Smlt2371 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; PRIAM: Cyclopropane-fatty-acyl-phospholipid synthase; SPTR: Cyclopropane-fatty-acyl-phospholipid synthase; manually curated; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004269656.1 COGs: COG3496 conserved hypothetical protein; InterPro IPR010775; KEGG: nde:NIDE0211 hypothetical protein; PFAM: protein of unknown function DUF1365; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1365) YP_004269657.1 COGs: COG2907 NAD/FAD-binding protein; InterPro IPR002937; KEGG: pmy:Pmen_1068 amine oxidase; PFAM: Amine oxidase; SPTR: uncharacterized protein; PFAM: Flavin containing amine oxidoreductase YP_004269658.1 COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357: IPR005101; KEGG: plm:Plim_3755 deoxyribodipyrimidine photolyase-related protein; PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase, FAD-binding/Cryptochrome, C-terminal; SPTR: deoxyribodipyrimidine photolyase-related protein; PFAM: FAD binding domain of DNA photolyase; deoxyribodipyrimidine photo-lyase-related protein YP_004269659.1 KEGG: plm:Plim_0145 hypothetical protein; SPTR: uncharacterized protein YP_004269660.1 COGs: COG0635 coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638: IPR007197: IPR010723; KEGG: plm:Plim_0144 coproporphyrinogen dehydrogenase; PFAM: radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: coproporphyrinogen III oxidase; PFAM: radical SAM superfamily; HemN C-terminal region YP_004269661.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_2941 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SMART: pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Probable serine/threonine protein kinase related protein; PFAM: PQQ enzyme repeat YP_004269662.1 COGs: COG1454 alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: psl:Psta_4501 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type; PRIAM: alcohol dehydrogenase; SPTR: iron alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase YP_004269663.1 KEGG: plm:Plim_2944 pyrrolo-quinoline quinone; SPTR: pyrrolo-quinoline quinone YP_004269664.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR006311: IPR010869; KEGG: rba:RB6795 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004269665.1 InterPro IPR011444; KEGG: rba:RB6796 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004269666.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: plm:Plim_1959 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: oxidoreductase, aldo/keto reductase family protein; PFAM: Aldo/keto reductase family YP_004269667.1 COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: plm:Plim_1960 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004269668.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: scl:sce7963 UbiE/COQ5 methyltransferase; PFAM: methyltransferase type 11; SPTR: UbiE/COQ5 methyltransferase; PFAM: methyltransferase domain YP_004269669.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: hmu:Hmuk_0282 endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; SPTR: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP YP_004269670.1 KEGG: plm:Plim_0704 hypothetical protein; SPTR: uncharacterized protein YP_004269671.1 COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: plm:Plim_3319 uncharacterized photosystem II stability/assembly factor-like protein; SPTR: uncharacterized protein YP_004269672.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_3518 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: O-linked GlcNAc transferase; PFAM: Tetratricopeptide repeat YP_004269673.1 COGs: COG0172 Seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase; InterPro IPR002317: IPR015866: IPR002314; KEGG: plm:Plim_0842 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004269674.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: psl:Psta_2347 cysteine desulfurase family protein; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Selenocysteine lyase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein YP_004269675.1 COGs: COG0328 ribonuclease HI; HAMAP: ribonuclease H; InterPro IPR002156; KEGG: plm:Plim_4135 ribonuclease H; PFAM: ribonuclease H; PRIAM: ribonuclease H; SPTR: ribonuclease H; PFAM: RNase H YP_004269676.1 COGs: COG0361 translation initiation factor 1 (IF-1); HAMAP: translation initiation factor IF-1; InterPro IPR004368: IPR006196; KEGG: plm:Plim_4134 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Probable translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_004269677.1 COGs: COG5285 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: plm:Plim_1638 phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase; SPTR: Probable hydroxylase protein; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004269678.1 KEGG: xca:xccb100_2962 hypothetical protein; SPTR: uncharacterized protein YP_004269679.1 KEGG: xca:xccb100_2962 hypothetical protein; SPTR: uncharacterized protein YP_004269680.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR010046: IPR006656: IPR006657; KEGG: plm:Plim_1366 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; PRIAM: nitrate reductase; SPTR: oxidoreductase alpha (Molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit YP_004269681.1 KEGG: bpt:Bpet0692 peptidoglycan glycosyltransferase; SPTR: peptidoglycan glycosyltransferase YP_004269682.1 COGs: COG0051 ribosomal protein S10; HAMAP: ribosomal protein S10 subgroup; InterPro IPR005731: IPR001848; KEGG: plm:Plim_0476 ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10 subgroup; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004269683.1 COGs: COG0087 ribosomal protein L3; InterPro IPR019927: IPR000597; KEGG: rba:RB7833 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004269684.1 COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: plm:Plim_0478 ribosomal protein L4/L1e; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1 family YP_004269685.1 COGs: COG0089 ribosomal protein L23; InterPro IPR013025; KEGG: rba:RB7836 50S ribosomal protein L23; PFAM: ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; PFAM: ribosomal protein L23 YP_004269686.1 COGs: COG0090 ribosomal protein L2; InterPro IPR005880: IPR002171; KEGG: plm:Plim_0480 ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal proteins L2, RNA binding domain; ribosomal proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004269687.1 COGs: COG0185 ribosomal protein S19; InterPro IPR005732: IPR002222; KEGG: plm:Plim_0481 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004269688.1 COGs: COG0091 ribosomal protein L22; InterPro IPR005727: IPR001063; KEGG: plm:Plim_0482 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004269689.1 COGs: COG0092 ribosomal protein S3; InterPro IPR005704: IPR004087: IPR008282: IPR004044: IPR 001351; KEGG: plm:Plim_0483 ribosomal protein S3; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3, bacterial; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004269690.1 COGs: COG0197 ribosomal protein L16/L10E; HAMAP: ribosomal protein L16; InterPro IPR000114: IPR016180; KEGG: plm:Plim_0484 ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004269691.1 InterPro IPR001854; KEGG: psl:Psta_2608 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: Probable 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004269692.1 COGs: COG0186 ribosomal protein S17; InterPro IPR019984: IPR000266; KEGG: plm:Plim_0486 ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004269693.1 COGs: COG0093 ribosomal protein L14; InterPro IPR005745: IPR000218; KEGG: plm:Plim_0487 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004269694.1 COGs: COG0198 ribosomal protein L24; InterPro IPR003256; KEGG: plm:Plim_0488 ribosomal protein L24; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004269695.1 COGs: COG0094 ribosomal protein L5; KEGG: plm:Plim_0489 ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5 YP_004269696.1 COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: plm:Plim_0491 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: ribosomal protein S8 YP_004269697.1 COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR019906: IPR020040; KEGG: plm:Plim_0492 ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004269698.1 COGs: COG0256 ribosomal protein L18; InterPro IPR004389: IPR005484; KEGG: plm:Plim_0493 ribosomal protein L18; PFAM: ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004269699.1 COGs: COG0098 ribosomal protein S5; InterPro IPR005712: IPR013810: IPR005324; KEGG: plm:Plim_0494 ribosomal protein S5; PFAM: ribosomal protein S5, C-terminal; ribosomal protein S5, N-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, C-terminal domain; ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004269700.1 COGs: COG0200 ribosomal protein L15; InterPro IPR005749; KEGG: plm:Plim_0495 ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15, bacterial-type; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004269701.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: plm:Plim_0496 preprotein translocase, SecY subunit; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004269702.1 COGs: COG0024 methionine aminopeptidase; InterPro IPR002467: IPR000994; KEGG: dsa:Desal_2239 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: methionine aminopeptidase; TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; manually curated; PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004269703.1 KEGG: bvu:BVU_2728 TonB-dependent outer membrane receptor; SPTR: TonB-dependent outer membrane receptor YP_004269704.1 HAMAP: ribosomal protein L36; InterPro IPR000473; KEGG: mxa:MXAN_3322 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_004269705.1 COGs: COG0099 ribosomal protein S13; InterPro IPR019980: IPR001892; KEGG: plm:Plim_0497 ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004269706.1 COGs: COG0100 ribosomal protein S11; InterPro IPR019981: IPR001971; KEGG: plm:Plim_0498 ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004269707.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterPro IPR011773: IPR011263: IPR011261: IPR011262: IPR 011260; KEGG: plm:Plim_0499 DNA-directed RNA polymerase, subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, subunit alpha, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, subunit alpha, bacterial and chloroplast-type YP_004269708.1 COGs: COG0203 ribosomal protein L17; HAMAP: ribosomal protein L17; InterPro IPR000456; KEGG: plm:Plim_0500 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004269709.1 COGs: COG0007 uroporphyrinogen-III methylase; InterPro IPR006366: IPR000878: IPR003754; KEGG: plm:Plim_1555 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; PRIAM: uroporphyrinogen-III C-methyltransferase., uroporphyrinogen-III synthase; SPTR: uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase YP_004269710.1 KEGG: cyn:Cyan7425_4251 hypothetical protein; SPTR: uncharacterized protein YP_004269711.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB8002 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-4-sulfatase; SPTR: N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase YP_004269712.1 KEGG: plm:Plim_1701 hypothetical protein; SPTR: uncharacterized protein YP_004269713.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: psl:Psta_3891 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase-like TIM barrel; PFAM: Xylose isomerase-like TIM barrel YP_004269714.1 KEGG: pvx:PVX_090875 hypothetical protein; SPTR: uncharacterized protein YP_004269715.1 KEGG: amr:AM1_2447 hypothetical protein; SPTR: uncharacterized protein YP_004269716.1 COGs: COG4099 peptidase; KEGG: rfr:Rfer_1105 phospholipase/carboxylesterase; SPTR: uncharacterized protein; PFAM: Dienelactone hydrolase family YP_004269717.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: cps:CPS_2375 sulfatase family protein; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Sulfatase family protein; PFAM: Sulfatase YP_004269718.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: mxa:MXAN_0076 appr-1-p processing domain-containing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: Appr-1-p processing enzyme family domain protein; PFAM: Macro domain YP_004269719.1 KEGG: plm:Plim_3480 UspA domain protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3478) YP_004269720.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: mkm:Mkms_2686 hypothetical protein; PFAM: protein of unknown function DUF421; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF421) YP_004269721.1 InterPro IPR013740; KEGG: plm:Plim_1226 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Probable thioredoxin; PFAM: AhpC/TSA family YP_004269722.1 InterPro IPR004675: IPR003779; KEGG: plm:Plim_0807 alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_004269723.1 COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: plm:Plim_2838 chromosome segregation and condensation protein ScpB; PFAM: chromosome segregation/condensation protein ScpB, prokaryote; SPTR: uncharacterized protein; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_004269724.1 COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR001433; KEGG: rba:RB10463 ferredoxin--NADP reductase; PFAM: oxidoreductase FAD/NAD(P)-binding; SPTR: Probable ferredoxin--NADP reductase; PFAM: oxidoreductase NAD-binding domain YP_004269725.1 COGs: COG0181 porphobilinogen deaminase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; InterPro IPR000860; KEGG: plm:Plim_3202 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: porphobilinogen deaminase, C-terminal domain; porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_004269726.1 COGs: COG0073 EMAP domain; InterPro IPR008231: IPR002547; KEGG: rba:RB11112 CsaA protein; PFAM: tRNA-binding domain; SPTR: CsaA protein; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA binding domain; TIGRFAM: export-related chaperone CsaA YP_004269727.1 KEGG: xla:447499 annexin A7; SPTR: uncharacterized protein YP_004269728.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR013976: IPR017442; KEGG: nhl:Nhal_1247 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; metal-dependent hydrolase HDOD; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine kinase; PFAM: protein kinase domain; HDOD domain YP_004269729.1 COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: ribonuclease III, bacterial; InterPro IPR011907: IPR000999: IPR001159; KEGG: plm:Plim_0231 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA binding; PRIAM: ribonuclease III; SMART: ribonuclease III; Double-stranded RNA binding; SPTR: ribonuclease III; TIGRFAM: ribonuclease III, bacterial; PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial YP_004269730.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR011782: IPR001478: IPR001254; KEGG: plm:Plim_3620 protease Do; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: serine protease HtrA/DegQ/DegS family protein; TIGRFAM: peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease Do/DeqQ family YP_004269731.1 KEGG: plm:Plim_1028 hypothetical protein; SPTR: uncharacterized protein YP_004269732.1 KEGG: zma:100383706 hypothetical protein LOC100383706; SPTR: uncharacterized protein YP_004269733.1 KEGG: cli:Clim_1282 outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004269734.1 InterPro IPR013740; KEGG: rba:RB4011 hypothetical protein; PFAM: Redoxin; SPTR: uncharacterized protein; PFAM: Redoxin YP_004269735.1 KEGG: plm:Plim_1643 hypothetical protein; SPTR: uncharacterized protein YP_004269736.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: plm:Plim_2325 UspA domain protein; PFAM: UspA; SPTR: Universal stress protein UspA; PFAM: Universal stress protein family YP_004269737.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: plm:Plim_1915 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: acetoacetate metabolism regulatory protein ATOC; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004269738.1 KEGG: hau:Haur_4801 hypothetical protein; SPTR: uncharacterized protein YP_004269739.1 COGs: COG0624 acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: plm:Plim_4229 peptidase M20; PFAM: peptidase M20; peptidase M20, dimerisation; PRIAM: acetylornithine deacetylase; SPTR: acetylornithine deacetylase ArgE; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase (ArgE) YP_004269740.1 InterPro IPR011446; KEGG: plm:Plim_3140 protein of unknown function DUF1551; PFAM: protein of unknown function DUF1551; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1551) YP_004269741.1 InterPro IPR000868; KEGG: plm:Plim_2481 isochorismatase hydrolase; PFAM: Isochorismatase-like; SPTR: Isochorismatase hydrolase family protein; manually curated; PFAM: Isochorismatase family YP_004269742.1 COGs: COG1872 conserved hypothetical protein; HAMAP: protein of unknown function DUF167; InterPro IPR003746; KEGG: rba:RB8260 hypothetical protein; PFAM: protein of unknown function DUF167; SPTR: UPF0235 protein DSM3645_27241; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251 YP_004269743.1 KEGG: plm:Plim_3540 hypothetical protein; SPTR: uncharacterized protein YP_004269744.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: plm:Plim_2841 radical SAM protein; PFAM: radical SAM; SPTR: AstB/chuR-related protein- enzyme of the MoaA / nifB / pqqE family; PFAM: radical SAM superfamily YP_004269745.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_4035 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase; PFAM: protein kinase domain YP_004269746.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807: IPR002314: IPR004154; KEGG: plm:Plim_0025 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding; PRIAM: histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; PFAM: anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004269747.1 InterPro IPR005358; KEGG: plm:Plim_3260 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004269748.1 KEGG: plm:Plim_1289 hypothetical protein; SPTR: uncharacterized protein YP_004269749.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_3482 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004269750.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: plm:Plim_3483 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter MFP subunit YP_004269751.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: plm:Plim_3484 outer membrane protein-like protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004269752.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR002939; KEGG: psl:Psta_4209 chaperone DnaJ domain protein; PFAM: Chaperone DnaJ, C-terminal; heat shock protein DnaJ, N-terminal; SMART: heat shock protein DnaJ, N-terminal; SPTR: heat shock protein DnaJ-like protein; PFAM: DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004269753.1 COGs: COG3808 inorganic pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; InterPro IPR004131; KEGG: cpb:Cphamn1_1101 membrane-bound proton-translocating pyrophosphatase; PFAM: inorganic H+ pyrophosphatase; PRIAM: inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: inorganic H+ pyrophosphatase; PFAM: inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_004269754.1 KEGG: rba:RB11107 hypothetical protein; SPTR: uncharacterized protein YP_004269755.1 COGs: COG0495 leucyl-tRNA synthetase; InterPro IPR002302: IPR002300: IPR013155; KEGG: plm:Plim_3733 leucyl-tRNA synthetase; PFAM: Valyl/leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class Ia; PRIAM: Leucine--tRNA ligase; SPTR: leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); tRNA synthetases class I (M); anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004269756.1 KEGG: plm:Plim_1484 hypothetical protein; SPTR: uncharacterized protein YP_004269757.1 InterPro IPR002509; KEGG: plm:Plim_0677 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase YP_004269758.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313: IPR004365: IPR004364; KEGG: plm:Plim_0837 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004269759.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: plm:Plim_2518 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004269760.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_2517 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein releasing system ATP-binding protein LolD; PFAM: ABC transporter YP_004269761.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005785: IPR001544; KEGG: plm:Plim_3544 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: D-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I; D-amino acid aminotransferase YP_004269762.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: plm:Plim_1631 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004269763.1 InterPro IPR004518; KEGG: rba:RB7161 hypothetical protein; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: uncharacterized protein; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004269764.1 COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR002942: IPR005709: IPR001912; KEGG: plm:Plim_0732 ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004269766.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dfe:Dfer_3179 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme YP_004269767.1 KEGG: plm:Plim_3824 hypothetical protein; SPTR: uncharacterized protein YP_004269768.1 InterPro IPR012902; KEGG: plm:Plim_1892 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269769.1 COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: aar:Acear_1207 protein of unknown function DUF606; PFAM: protein of unknown function DUF606; SPTR: glycyl-tRNA synthetase, beta subunit; manually curated; PFAM: protein of unknown function, DUF606 YP_004269770.1 KEGG: plm:Plim_1362 hypothetical protein; SPTR: uncharacterized protein YP_004269771.1 KEGG: ste:STER_0478 surface antigen; SPTR: LysM domain protein YP_004269772.1 COGs: COG2378 transcriptional regulator protein; KEGG: plm:Plim_3896 hypothetical protein; SPTR: Helix-turn-helix type 11 domain protein; PFAM: HTH domain YP_004269773.1 InterPro IPR000644; KEGG: mmg:MTBMA_c10240 CBS domain containing protein; PFAM: cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core; SPTR: CBS domain containing protein; PFAM: CBS domain YP_004269774.1 COGs: COG1657 Squalene cyclase; InterPro IPR006400: IPR018333: IPR001330; KEGG: plm:Plim_1904 squalene-hopene cyclase; PFAM: prenyltransferase/squalene oxidase; PRIAM: Squalene--hopene cyclase; SPTR: Squalene-hopene cyclase; TIGRFAM: Hopene cyclase; Squalene cyclase; PFAM: prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase YP_004269775.1 COGs: COG3252 Methenyltetrahydromethanopterin cyclohydrolase; HAMAP: Methenyltetrahydromethanopterin cyclohydrolase; InterPro IPR003209; KEGG: plm:Plim_2586 methenyltetrahydromethanopterin cyclohydrolase; PFAM: Methenyltetrahydromethanopterin cyclohydrolase; PRIAM: Methenyltetrahydromethanopterin cyclohydrolase; SPTR: Methenyltetrahydromethanopterin cyclohydrolase; TIGRFAM: Methenyltetrahydromethanopterin cyclohydrolase; PFAM: Cyclohydrolase (MCH); TIGRFAM: methenyltetrahydromethanopterin cyclohydrolase YP_004269776.1 SPTR: uncharacterized protein YP_004269777.1 COGs: COG1706 flagellar basal-body P-ring protein; InterPro IPR001782; KEGG: plm:Plim_1168 flagellar P-ring protein; PFAM: flagellar P-ring protein; SPTR: flagellar P-ring protein; PFAM: flagellar P-ring protein YP_004269778.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR011890: IPR003395; KEGG: plm:Plim_1167 chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: chromosome segregation SMC protein; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type YP_004269779.1 COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: transposase, IS116/IS110/IS902; SPTR: transposase IS1111A/IS1328/IS1533 family protein; PFAM: transposase IS116/IS110/IS902 family; transposase YP_004269780.1 KEGG: psl:Psta_0747 hypothetical protein; SPTR: uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding YP_004269781.1 KEGG: plm:Plim_4140 hypothetical protein; SPTR: uncharacterized protein YP_004269782.1 COGs: COG1166 arginine decarboxylase (spermidine biosynthesis); InterPro IPR002985: IPR000183; KEGG: cja:CJA_1511 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: arginine decarboxylase; SPTR: arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: pyridoxal-dependent decarboxylase, C-terminal sheet domain; pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic YP_004269783.1 KEGG: rba:RB9855 transmembrane protein; SPTR: uncharacterized protein YP_004269784.1 COGs: COG0657 esterase/lipase; KEGG: ote:Oter_4537 xylanase; SPTR: Xylanase; PFAM: alpha/beta hydrolase fold YP_004269785.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: plm:Plim_0716 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: nitrogen assimilation regulatory protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004269786.1 HAMAP: protein of unknown function DUF1328; InterPro IPR009760; KEGG: pmy:Pmen_0080 hypothetical protein; PFAM: protein of unknown function DUF1328; SPTR: UPF0391 membrane protein Pmen_0080; PFAM: protein of unknown function (DUF1328) YP_004269787.1 InterPro IPR008207; KEGG: nde:NIDE2371 phosphorelay protein, contains HPt domain; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SPTR: phosphorelay protein, contains HPt domain; manually curated; PFAM: Hpt domain YP_004269788.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: psl:Psta_2398 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase; PRIAM: Retinal dehydrogenase; SPTR: aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase family YP_004269789.1 COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383: IPR007197; KEGG: plm:Plim_2783radical SAM protein; PFAM: radical SAM; SPTR: ribosomal RNA large subunit methyltransferase N; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: radical SAM superfamily; TIGRFAM:radical SAM protein YP_004269790.1 COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; InterPro IPR007170; KEGG: plm:Plim_2770 SpoVG family protein; PFAM: sporulation stage V, protein G; SPTR: SpoVG family protein; PFAM: SpoVG YP_004269791.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424: IPR006204; KEGG: plm:Plim_2769 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004269792.1 COGs: COG1506 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: plm:Plim_2421 hypothetical protein; PRIAM: acylglycerol lipase; SPTR: uncharacterized protein; PFAM: prolyl oligopeptidase family YP_004269793.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transporters permeases; InterPro IPR001851; KEGG: plm:Plim_0780 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: Sugar ABC transporter permease; PFAM: Branched-chain amino acid transporter / permease YP_004269794.1 COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease; InterPro IPR013525; KEGG: sus:acid_4640 ABC transporter; PFAM: ABC transporter; SPTR: ABC-2 type transporter; PFAM: ABC transporter YP_004269795.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: tva:TVAG_320420 FGGY family of carbohydrate kinases, N-terminal domain containing protein; PFAM: carbohydrate kinase, FGGY, N-terminal; PRIAM: Sedoheptulokinase; SPTR: Sugar (Pentulose and hexulose) kinases; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_004269796.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268: IPR006218; KEGG: psl:Psta_4054 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004269797.1 KEGG: plm:Plim_3517 hypothetical protein; SPTR: uncharacterized protein YP_004269798.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR003018: IPR000160; KEGG: plm:Plim_0092 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: FHA domain/GGDEF domain protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004269799.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_4051 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2 YP_004269801.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4815 arylsulphatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004269802.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: rba:RB7494 NADH-dependent dyhydrogenase related protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: Probable NADH-dependent dyhydrogenase related protein; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_004269803.1 COGs: COG5285 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: psl:Psta_3174 phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004269804.1 InterPro IPR001330; KEGG: plm:Plim_4048 cycloartenol synthase-like protein; PFAM: prenyltransferase/squalene oxidase; SPTR: uncharacterized protein YP_004269805.1 COGs: COG0104 adenylosuccinate synthase; HAMAP: adenylosuccinate synthetase; InterPro IPR001114; KEGG: plm:Plim_2072 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004269806.1 InterPro IPR018391; KEGG: plm:Plim_2630 pyrrolo-quinoline quinone; SPTR: uncharacterized protein YP_004269807.1 COGs: COG3458 acetyl esterase (deacetylase); InterPro IPR008391; KEGG: rba:RB5616 hypothetical protein; PFAM: acetyl xylan esterase; SPTR: uncharacterized protein; PFAM: acetyl xylan esterase (AXE1) YP_004269808.1 KEGG: plm:Plim_3773 PGAP1 family protein; SPTR: PGAP1 family protein; PFAM: PGAP1-like protein YP_004269809.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: hoh:Hoch_5544 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine protein kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004269810.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: mch:Mchl_4548 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004269811.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR019546: IPR000683; KEGG: plm:Plim_1207 oxidoreductase; PFAM: oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Probable oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004269812.1 KEGG: pno:SNOG_01411 hypothetical protein; SPTR: uncharacterized protein YP_004269813.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: rba:RB11985 quinone oxidoreductase; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Quinone oxidoreductase; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004269814.1 KEGG: plm:Plim_2883 hypothetical protein; SPTR: uncharacterized protein YP_004269815.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: hoh:Hoch_2081 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Crp/Fnr family transcriptional regulator protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004269816.1 KEGG: scb:SCAB_72461 hypothetical protein; SPTR: uncharacterized protein YP_004269817.1 KEGG: plm:Plim_2994 hypothetical protein; SPTR: uncharacterized protein YP_004269818.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: plm:Plim_3252 peptidylprolyl isomerase FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004269819.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_2182 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable protein kinase yloP- serine/threonine protein kinase; PFAM: protein kinase domain YP_004269820.1 KEGG: hje:HacjB3_09885 rhomboid-like intramembrane serine protease; SPTR: Inversin YP_004269821.1 InterPro IPR010496; KEGG: rba:RB5031 signal peptide; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004269822.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: psl:Psta_4045 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Probable RNA polymerase sigma factor cnrH; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1; RNA polymerase sigma factor, sigma-70 family YP_004269823.1 KEGG: fjo:Fjoh_4277 hypothetical protein; SPTR: uncharacterized protein YP_004269824.1 KEGG: sbi:SORBI_09g019055 hypothetical protein; SPTR: uncharacterized protein Sb09g019055 YP_004269825.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001680: IPR001254: IPR019781; KEGG: psl:Psta_1852 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; WD40 repeat, subgroup; SPTR: peptidase S1 and S6 chymotrypsin/Hap; PFAM: Trypsin; WD domain, G-beta repeat YP_004269826.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR019781; KEGG: rba:RB617 WD-40 repeat-containing regulatory protein; PFAM: WD40 repeat, subgroup; SPTR: Probable WD-40 repeat regulatory protein; PFAM: WD domain, G-beta repeat YP_004269827.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269828.1 KEGG: psl:Psta_0328 hypothetical protein; SPTR: uncharacterized protein YP_004269829.1 KEGG: plm:Plim_1626 hypothetical protein; SPTR: uncharacterized protein YP_004269830.1 InterPro IPR012902; KEGG: plm:Plim_1627 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269831.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: plm:Plim_3634 ATPase AAA; PFAM: ATPase, AAA-5; SPTR: ATPase associated with various cellular activities AAA_5; PFAM: AAA domain (dynein-related subfamily) YP_004269832.1 InterPro IPR001087; KEGG: plm:Plim_0665 hypothetical protein; PFAM: Lipase, GDSL; SPTR: Nodulin-26; PFAM: GDSL-like Lipase/acylhydrolase YP_004269833.1 InterPro IPR012902; KEGG: psl:Psta_0327 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269834.1 KEGG: plm:Plim_1453 hypothetical protein; SPTR: uncharacterized protein YP_004269835.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR013428: IPR013427; KEGG: psl:Psta_2212 membrane-bound dehydrogenase domain protein; SPTR: Probable L-sorbosone dehydrogenase; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004269836.1 KEGG: plm:Plim_0620 hypothetical protein; SPTR: Leucine-rich repeat domain protein YP_004269837.1 KEGG: ptm:GSPATT00000192001 hypothetical protein; SPTR: lysophospholipase YP_004269839.1 InterPro IPR010743; KEGG: plm:Plim_1426 methionine biosynthesis protein MetW; PFAM: methionine biosynthesis MetW; SPTR: SAM-dependent methyltransferase; TIGRFAM: methionine biosynthesis MetW; manually curated; PFAM: methionine biosynthesis protein MetW; TIGRFAM: methionine biosynthesis protein MetW YP_004269840.1 KEGG: rba:RB12342 hypothetical protein; SPTR: uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004269841.1 KEGG: rba:RB12340 hypothetical protein; SPTR: uncharacterized protein YP_004269842.1 KEGG: plm:Plim_0815 hypothetical protein; SPTR: uncharacterized protein YP_004269843.1 COGs: COG3349 conserved hypothetical protein; InterPro IPR017830: IPR002937; KEGG: plm:Plim_3204 squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase; PRIAM: Carotene 7,8-desaturase; SPTR: Carotene 7,8-desaturase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: squalene-associated FAD-dependent desaturase YP_004269844.1 COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: plm:Plim_1341 beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; beta-Casp domain YP_004269845.1 KEGG: psl:Psta_0118 hypothetical protein; SPTR: uncharacterized protein YP_004269846.1 KEGG: rba:RB9513 mu-protocadherin- cell-suface protein; SPTR: Probable mu-protocadherin- cell-suface protein YP_004269847.1 COGs: COG0038 chloride channel protein EriC; InterPro IPR000644: IPR001807; KEGG: rba:RB2982 chloride channel; PFAM: chloride channel, voltage gated; cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core; SPTR: chloride channel; PFAM: CBS domain; Voltage gated chloride channel YP_004269848.1 COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: plm:Plim_1236 peptidase M22 glycoprotease; PFAM: peptidase M22, glycoprotease; SPTR: peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ; PFAM: glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_004269849.1 COGs: COG0848 biopolymertransporter; InterPro IPR003400; KEGG: plm:Plim_1460 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: uncharacterized protein; PFAM: biopolymertransporter ExbD/TolR YP_004269850.1 InterPro IPR001330; KEGG: plm:Plim_1459 hypothetical protein; PFAM: prenyltransferase/squalene oxidase; SPTR: uncharacterized protein YP_004269851.1 COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; KEGG: plm:Plim_0595 carboxypeptidase Taq; PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; PRIAM: carboxypeptidase Taq; SPTR: Thermostable carboxypeptidase 1; PFAM: carboxypeptidase Taq (M32) metallopeptidase YP_004269852.1 KEGG: psl:Psta_3764 hypothetical protein; SPTR: uncharacterized protein YP_004269853.1 KEGG: plm:Plim_0869 hypothetical protein; SPTR: uncharacterized protein YP_004269854.1 COGs: COG2267 lysophospholipase; InterPro IPR000073; KEGG: plm:Plim_0871 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1; SPTR: alpha/beta hydrolase fold protein; PFAM: lysophospholipase YP_004269855.1 KEGG: rba:RB6119 hypothetical protein; SPTR: uncharacterized protein YP_004269856.1 COGs: COG1030 membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: plm:Plim_0730 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: uncharacterized protein YP_004269857.1 KEGG: plm:Plim_2891 hypothetical protein; SPTR: uncharacterized protein YP_004269858.1 COGs: COG0448 ADP-glucose pyrophosphorylase; HAMAP: glucose-1-phosphate adenylyltransferase; InterPro IPR011831: IPR005835: IPR001451; KEGG: plm:Plim_1691 glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: glucose-1-phosphate adenylyltransferase; SPTR: glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_004269859.1 InterPro IPR012902; KEGG: plm:Plim_3827 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269860.1 InterPro IPR005242; KEGG: gem:GM21_1628 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004269861.1 COGs: COG4747 ACT domain-containing protein; KEGG: plm:Plim_0909 amino acid-binding ACT domain-containing protein; SPTR: uncharacterized protein YP_004269862.1 KEGG: plm:Plim_3850 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104) YP_004269863.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_1158 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: Dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2 YP_004269864.1 InterPro IPR010359; KEGG: apt:APA01_03580 transcriptional regulator Xre; PFAM: protein of unknown function DUF955; SPTR: Predicted Zn peptidase; PFAM: Domain of unknown function (DUF955) YP_004269865.1 KEGG: plm:Plim_2249 hypothetical protein; SPTR: uncharacterized protein YP_004269866.1 COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR013123: IPR001537; KEGG: plm:Plim_1765 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: YacO; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_004269867.1 COGs: COG0593 ATPase involved in DNA replication initiation; InterPro IPR013159: IPR013317; KEGG: plm:Plim_3410 chromosomal replication initiator DnaA domain protein; PFAM: Chromosomal replication initiator, DnaA C-terminal; Chromosomal replication control, initiator (DnaA)/regulator (Hda); SMART: Chromosomal replication initiator, DnaA C-terminal; SPTR: Chromosomal replication initiation protein; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004269868.1 COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: plm:Plim_4105 peptidase membrane zinc metallopeptidase PFAM: peptidase, membrane zinc metallopeptidase, SPTR: peptidase membrane zinc metallopeptidase ; PFAM: neutral zinc metallopeptidase YP_004269869.1 KEGG: sar:SAR2383 hypothetical protein; SPTR: uncharacterized protein YP_004269870.1 KEGG: bfo:BRAFLDRAFT_124217 hypothetical protein; SPTR: uncharacterized protein YP_004269871.1 COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: psl:Psta_0761 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family YP_004269872.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: plm:Plim_4103 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Lipopolysaccharide biosynthesis protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004269873.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: plm:Plim_2910 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Probable phosphoesterase ykuE; PFAM: Calcineurin-like phosphoesterase YP_004269874.1 KEGG: psl:Psta_2060 hypothetical protein; SPTR: uncharacterized protein YP_004269875.1 KEGG: pcu:pc1599 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF367) YP_004269876.1 KEGG: plm:Plim_1129 hypothetical protein; SPTR: uncharacterized protein YP_004269877.1 COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR008207: IPR003594: IPR002545: IPR001789: IPR 004105; KEGG: plm:Plim_1906 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction response regulator, receiver domain; SPTR: CheA Signal transduction histidine Kinases (STHK); PFAM: CheW-like domain; Response regulator receiver domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_004269878.1 COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: plm:Plim_1907 CheW domain protein; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: CheW domain protein; PFAM: CheW-like domain YP_004269879.1 COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR000014: IPR001610: IPR004089: IPR000971: IPR 013655; KEGG: plm:Plim_1909 chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; Globin, subset; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif; PAS; SPTR: Chemotaxis sensory transducer; TIGRFAM: PAS; PFAM: Globin; methyl-accepting chemotaxis protein (MCP) signaling domain; PAS fold; TIGRFAM: PAS domain S-box YP_004269880.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc subunit beta, bacterial; InterPro IPR004532: IPR005146: IPR005147: IPR005121; KEGG: plm:Plim_2262 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, subunit beta, bacterial; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; TIGRFAM: phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial YP_004269881.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR011809: IPR000760; KEGG: plm:Plim_2305 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: inositol monophosphatase; TIGRFAM: Histidinol-phosphate phosphatase, , inositol monophosphatase; PFAM: inositol monophosphatase family; TIGRFAM: histidinol-phosphate phosphatase HisN, inositol monophosphatase family YP_004269882.1 COGs: COG3875 conserved hypothetical protein; InterPro IPR018657; KEGG: plm:Plim_2304 hypothetical protein; PFAM: protein of unknown function DUF2088; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2088) YP_004269883.1 KEGG: plm:Plim_4198 hypothetical protein; SPTR: uncharacterized protein YP_004269884.1 KEGG: plm:Plim_4199 hypothetical protein; SPTR: uncharacterized protein YP_004269885.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR020630: IPR020631: IPR000672; KEGG: nth:Nther_1700 5,10-methylenetetrahydrofolate dehydrogenase (NADP+), methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004269886.1 COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: plm:Plim_2954 cytochrome C oxidase subunit III; PFAM: cytochrome C oxidase subunit III; SPTR: cytochrome C oxidase subunit III; PFAM: cytochrome C oxidase subunit III YP_004269887.1 COGs: COG0109 polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR006369: IPR000537; KEGG: plm:Plim_2955 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase YP_004269888.1 COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: plm:Plim_2956 uncharacterized protein required for cytochrome oxidase assembly-like protein; PFAM: cytochrome oxidase assembly; SPTR: uncharacterized protein; PFAM: cytochrome oxidase assembly protein YP_004269889.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: plm:Plim_2957 cytochrome-c oxidase; PFAM: cytochrome C oxidase subunit I; SPTR: cytochrome C oxidase subunit I; PFAM: cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome C oxidase subunit I YP_004269890.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR014222: IPR011759: IPR002429; KEGG: plm:Plim_2958 cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II C-terminal; cytochrome C oxidase subunit II, transmembrane domain; SPTR: cytochrome C oxidase subunit 2; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II, periplasmic domain; cytochrome C oxidase subunit II, transmembrane domain; TIGRFAM: cytochrome C oxidase subunit II YP_004269891.1 InterPro IPR003088; KEGG: plm:Plim_2959 cytochrome C class I; PFAM: cytochrome C, class I; SPTR: Probable PbrT protein-possibly cytochrome c; PFAM: cytochrome C YP_004269892.1 COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR005225: IPR018948: IPR002917: IPR004520; KEGG: plm:Plim_1709 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein TrmE, N-terminal; SPTR: tRNA modification GTPase mnmE; TIGRFAM: Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain YP_004269894.1 KEGG: plm:Plim_0107 hypothetical protein; SPTR: uncharacterized protein YP_004269895.1 KEGG: plm:Plim_0108 hypothetical protein; SPTR: uncharacterized protein YP_004269896.1 KEGG: plm:Plim_0109 hypothetical protein; SPTR: uncharacterized protein YP_004269897.1 KEGG: spl:Spea_0293 hypothetical protein; SPTR: uncharacterized protein YP_004269898.1 COGs: COG1254 acylphosphatase; HAMAP: acylphosphatase; InterPro IPR001792; KEGG: ote:Oter_3852 acylphosphatase; PFAM: acylphosphatase-like; SPTR: acylphosphatase; PFAM: acylphosphatase YP_004269899.1 KEGG: hsa:80164 hypothetical protein FLJ22184; SPTR: uncharacterized protein YP_004269900.1 InterPro IPR017136; KEGG: maq:Maqu_3104 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterized protein conserved in bacteria (DUF2256) YP_004269901.1 KEGG: plm:Plim_3022 hypothetical protein; SPTR: uncharacterized protein YP_004269902.1 COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR004846; KEGG: plm:Plim_3839 type II and III secretion system protein; PFAM: type II/III secretion system; SPTR: Probable type II secretion system protein; PFAM: Bacterial type II and III secretion system protein YP_004269903.1 KEGG: plm:Plim_3838 hypothetical protein; SPTR: uncharacterized protein YP_004269904.1 COGs: COG4867 Uncharacterized protein with a von Willebrand factor A (vWA) domain; KEGG: psl:Psta_3033 protein with a von Willebrand factor A (vWA) domain-like protein; SPTR: uncharacterized protein YP_004269905.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR003594: IPR013655; KEGG: drt:Dret_0082 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; SMART: ATPase-like, ATP-binding domain; PAS; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_004269906.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: psl:Psta_0898 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: oxidoreductase, short-chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase YP_004269907.1 KEGG: kfl:Kfla_5053 hypothetical protein; SPTR: uncharacterized protein YP_004269908.1 COGs: COG4276 conserved hypothetical protein; InterPro IPR019587; KEGG: plm:Plim_1558 hypothetical protein; PFAM: polyketide cyclase/dehydrase; SPTR: cell division inhibitor SULA; PFAM: polyketide cyclase / dehydrase and lipid transport YP_004269909.1 COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099; KEGG: psl:Psta_1306 pyridine nucleotide-disulphide oxidoreductase dimerization region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: NAD(P)(+) transhydrogenase (B-specific); SPTR: Pyridine nucleotide-disulphide oxidoreductase dimerization region; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004269910.1 InterPro IPR001330; KEGG: rba:RB6452 hypothetical protein; PFAM: prenyltransferase/squalene oxidase; SPTR: uncharacterized protein; PFAM: prenyltransferase and squalene oxidase repeat YP_004269911.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR003660; KEGG: lma:LmjF34.0690 hypothetical protein; SPTR: uncharacterized protein YP_004269912.1 KEGG: rba:RB6448 en/Spm-like transposon protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1355) YP_004269913.1 KEGG: pmy:Pmen_4604 lysine exporter protein LysE/YggA; SPTR: polysaccharide biosynthesis protein YP_004269914.1 COGs: COG1410 methionine synthase I cobalamin-binding domain; InterPro IPR011822: IPR003726: IPR000489: IPR003759: IPR 006158: IPR004223; KEGG: plm:Plim_2467 methionine synthase; PFAM: Homocysteine S-methyltransferase; dihydropteroate synthase, DHPS; methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain; PRIAM: methionine synthase; SPTR: methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain YP_004269915.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR004620: IPR003171; KEGG: plm:Plim_3996 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: methylenetetrahydrofolate reductase (NAD(P)H); SPTR: methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form YP_004269916.1 KEGG: dsi:Dsim_GD19089 GD19089 gene product from transcript GD19089-RA; SPTR: uncharacterized protein YP_004269917.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: adenosylhomocysteinase; InterPro IPR000043: IPR015878; KEGG: plm:Plim_3615 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: adenosylhomocysteinase; SPTR: adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_004269919.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: psl:Psta_2108 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004269920.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: plm:Plim_1962 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase); PFAM: NAD dependent epimerase/dehydratase family YP_004269921.1 COGs: COG3956 protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551: IPR004518; KEGG: plm:Plim_1357 MazG family protein; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004269922.1 KEGG: plm:Plim_1358 hypothetical protein; SPTR: uncharacterized protein YP_004269923.1 InterPro IPR006311: IPR011447; KEGG: psl:Psta_2274 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004269924.1 InterPro IPR011658: IPR013042: IPR013039; KEGG: psl:Psta_2273 protein of unknown function DUF1588; PFAM: protein of unknown function DUF1588; hypothetical protein; SMART: PA14; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1588); protein of unknown function (DUF1592); protein of unknown function (DUF1595); PA14 domain YP_004269925.1 COGs: COG2706 3-carboxymuconate cyclase; KEGG: psl:Psta_1125 6-phosphogluconolactonase; PRIAM: 6-phosphogluconolactonase; SPTR: uncharacterized protein; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme YP_004269926.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: plm:Plim_3659 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004269927.1 KEGG: rba:RB12452 hypothetical protein; SPTR: uncharacterized protein YP_004269928.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease; InterPro IPR003838; KEGG: plm:Plim_0100 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004269929.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_3433 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein releasing system ATP-binding protein lolD; PFAM: ABC transporter YP_004269930.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: psl:Psta_1657 thioesterase superfamily protein; PFAM: thioesterase superfamily; SPTR: Probable 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004269931.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: rba:RB3967 sodium/proline symporter (proline permease); PFAM: Sodium/solute symporter; SPTR: Probable sodium/proline symporter (Proline permease); PFAM: Sodium:solute symporter family YP_004269932.1 KEGG: rba:RB3966 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3311) YP_004269933.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; HAMAP: Orotidine 5'-phosphate decarboxylase; InterPro IPR011995: IPR001754; KEGG: plm:Plim_2904 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_004269934.1 COGs: COG1164 oligoendopeptidase F; InterPro IPR001567; KEGG: plm:Plim_1955 peptidase M3A and M3B thimet/oligopeptidase F; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: oligoendopeptidase F; PFAM: oligopeptidase F; peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family YP_004269935.1 KEGG: gym:GYMC10_1700 major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1 YP_004269936.1 COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804; KEGG: plm:Plim_0079 isocitrate dehydrogenase (NADP(+)); PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: isocitrate dehydrogenase (NADP(+)); SPTR: isocitrate dehydrogenase, ; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_004269937.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dal:Dalk_3415 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family YP_004269938.1 KEGG: dwi:Dwil_GK18894 GK18894 gene product from transcript GK18894-RA; SPTR: membrane protein YP_004269939.1 COGs: COG1502 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: mes:Meso_3886 cardiolipin synthetase 2; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; SPTR: phospholipase D/transphosphatidylase YP_004269940.1 COGs: COG0424 nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: ank:AnaeK_1353 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004269941.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: plm:Plim_3158 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-related; SPTR: stage II sporulation E family protein; PFAM: stage II sporulation protein E (SpoIIE) YP_004269942.1 COGs: COG4335 DNA alkylation repair protein; KEGG: rfr:Rfer_0150 DNA alkylation repair enzyme; SPTR: DNA alkylation repair enzyme YP_004269943.1 KEGG: nfi:NFIA_087990 hypothetical protein; SPTR: transcription antitermination protein nusG YP_004269944.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease; InterPro IPR003838; KEGG: plm:Plim_0127 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: Probable ATP-binding/permease fusion ABC transporter; manually curated; PFAM: Predicted permease YP_004269945.1 COGs: COG1520 FOG: WD40-like repeat; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; SPTR: Probable serine/threonine protein kinase afsK YP_004269946.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: plm:Plim_4167 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD-like; SPTR: polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein YP_004269947.1 InterPro IPR018580; KEGG: plm:Plim_0394 hypothetical protein; PFAM: protein of unknown function, membrane YfhO; SPTR: uncharacterized protein; PFAM: Bacterial membrane protein YfhO YP_004269948.1 COGs: COG0058 glucan phosphorylase; InterPro IPR011834: IPR000811; KEGG: plm:Plim_3493 alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; PRIAM: phosphorylase; SPTR: uncharacterized protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: carbohydrate phosphorylase; protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_004269949.1 InterPro IPR010869; KEGG: rba:RB7228 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004269950.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031; KEGG: plm:Plim_3658 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: uncharacterized protein; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain YP_004269951.1 KEGG: plm:Plim_3503 hypothetical protein; SPTR: uncharacterized protein YP_004269952.1 KEGG: plm:Plim_3507 hypothetical protein; SPTR: uncharacterized protein YP_004269953.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR000644: IPR005990: IPR001093; KEGG: plm:Plim_3508 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: cystathionine beta-synthase, core; SPTR: inosine-5-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004269954.1 COGs: COG0030 dimethyladenosine transferase (rRNA methylation); HAMAP: ribosomal RNA adenine dimethylase; InterPro IPR020598: IPR011530: IPR001737; KEGG: plm:Plim_3509 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase, N-terminal; SPTR: ribosomal RNA small subunit methyltransferase A; TIGRFAM: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004269955.1 InterPro IPR000477; KEGG: plm:Plim_2043 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (reverse transcriptase); PRIAM: RNA-directed DNA polymerase; SPTR: uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_004269956.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023; KEGG: psl:Psta_2483 phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: phosphofructokinase YP_004269957.1 InterPro IPR005834; KEGG: psl:Psta_2485 hypothetical protein; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase YP_004269958.1 KEGG: plm:Plim_2949 hypothetical protein; SPTR: uncharacterized protein YP_004269959.1 InterPro IPR001087; KEGG: rba:RB4993 signal peptide; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; PFAM: GDSL-like Lipase/acylhydrolase YP_004269960.1 COGs: COG0362 6-phosphogluconate dehydrogenase; InterPro IPR006113: IPR006115: IPR006114; KEGG: plm:Plim_2297 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating YP_004269961.1 COGs: COG1234 metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: plm:Plim_2095 metal-dependent hydrolase of the beta-lactamase superfamily III-like protein; SPTR: uncharacterized protein YP_004269962.1 InterPro IPR012902; KEGG: plm:Plim_0086 protein of unknown function DUF1559; SPTR: Probable fimbrial protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004269963.1 KEGG: plm:Plim_2677 hypothetical protein; SPTR: uncharacterized protein YP_004269964.1 COGs: COG0028 thiamine pyrophosphate-requiring protein; InterPro IPR012846: IPR012001: IPR012000: IPR011766; KEGG: plm:Plim_1406 acetolactate synthase large subunit; PFAM: thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: acetolactate synthase; SPTR: acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic; PFAM: thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, N-terminal TPP binding domain; thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_004269965.1 KEGG: plm:Plim_0618 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004269966.1 KEGG: rba:RB7279 hypothetical protein; SPTR: uncharacterized protein YP_004269967.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: rba:RB990 tetracycline-efflux transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Tetracycline-efflux transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_004269968.1 KEGG: phu:Phum_PHUM222100 ubiquitin specific proteinase, SPTR: uncharacterized protein YP_004269969.1 InterPro IPR000297; KEGG: plm:Plim_2735 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_004269970.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR000253; KEGG: plm:Plim_1306 forkhead-associated protein; PFAM: Forkhead-associated; SPTR: uncharacterized protein YP_004269971.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: rba:RB5948 Zn-dependent alcohol dehydrogenase; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: Probable alcohol dehydrogenase (Zn-dependent); PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004269972.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: plm:Plim_0036 DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III beta chain; PFAM: DNA polymerase III subunit beta, C-terminal domain; DNA polymerase III subunit beta, N-terminal domain; DNA polymerase III subunit beta, central domain; TIGRFAM: DNA polymerase III subunit beta YP_004269973.1 InterPro IPR007922; KEGG: plm:Plim_2764 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF721) YP_004269974.1 COGs: COG0187 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) subunit beta; InterPro IPR003594: IPR001241: IPR013506: IPR006171: IPR 002288; KEGG: plm:Plim_0450 DNA topoisomerase type IIsubunit alpha B region 2 domain protein; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase subunit beta, carboxyl terminus; TIGRFAM: DNA gyrase subunit beta YP_004269975.1 COGs: COG0778 nitroreductase; InterPro IPR000415; KEGG: htu:Htur_2397 nitroreductase; PFAM: nitroreductase-like; SPTR: nitroreductase; PFAM: nitroreductase family YP_004269976.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: psl:Psta_3577 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein D; PFAM: AcrB/AcrD/AcrF family YP_004269977.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: psl:Psta_3578 efflux transporter RND family, MFP subunit; SPTR: Secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004269978.1 COGs: COG0611 thiamine monophosphate kinase; InterPro IPR006283: IPR000728: IPR010918; KEGG: plm:Plim_1244 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; PRIAM: thiamine-phosphate kinase; SPTR: thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_004269979.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_3958 sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Choline sulfatase; PFAM: Sulfatase YP_004269980.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264: IPR001986; KEGG: plm:Plim_1108 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004269981.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: pmy:Pmen_1034 molybdenum cofactor biosynthesis protein MoaC; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_004269982.1 COGs: COG1551 carbon storage regulator (could also regulate swarming and quorum sensing); HAMAP: carbon storage regulator; InterPro IPR003751; KEGG: plm:Plim_0311 carbon storage regulator; PFAM: carbon storage regulator; SPTR: Probable carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004269984.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR017833: IPR007197; KEGG: plm:Plim_3361 hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM; SPTR: Fe-S protein, radical SAM family; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM superfamily; Domain of unknown function (DUF3463); TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH YP_004269985.1 COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: plm:Plim_3530 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: aspartate transaminase; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II YP_004269986.1 KEGG: plm:Plim_0561 hypothetical protein; SPTR: uncharacterized protein YP_004269987.1 KEGG: bfu:BC1G_15350 hypothetical protein; SPTR: uncharacterized protein YP_004269988.1 COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterPro IPR012319: IPR015886; KEGG: tpr:Tpau_1402 DNA-(apurinic or apyrimidinic site) lyase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase, catalytic domain; SPTR: Formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain YP_004269989.1 KEGG: dat:HRM2_29280 FabG7; SPTR: FabG7 YP_004269990.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR014001: IPR001650: IPR005259: IPR011545; KEGG: plm:Plim_1374 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Primosomal protein N; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; type III restriction enzyme, res subunit; TIGRFAM: primosomal protein N' YP_004269991.1 InterPro IPR014284: IPR013249; KEGG: sus:acid_3840 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004269992.1 COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: min:Minf_0390 predicted Na+-dependent transporter; PFAM: Bile acid:sodium symporter; SPTR: sodium symporter; PFAM: Sodium Bile acid symporter family YP_004269993.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: plm:Plim_1967 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; manually curated; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004269994.1 COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR006200: IPR006199: IPR019759; KEGG: plm:Plim_2243 LexA repressor; PFAM: LexA, DNA-binding domain; peptidase S24/S26A/S26B, conserved region; SPTR: LexA repressor; TIGRFAM: peptidase S24, LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA YP_004269995.1 InterPro IPR000866; KEGG: plm:Plim_2242 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004269996.1 InterPro IPR000489; KEGG: plm:Plim_2035 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase, DHPS; SPTR: uncharacterized protein; TIGRFAM: dihydropteroate synthase-related protein YP_004269997.1 COGs: COG0147 anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890; KEGG: plm:Plim_2036 anthranilate synthase; PFAM: chorismate binding, C-terminal; anthranilate synthase component I, N-terminal; PRIAM: anthranilate synthase; SPTR: Para-aminobenzoate synthase component I; PFAM: chorismate binding enzyme; anthranilate synthase component I, N terminal region; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade YP_004269998.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterPro IPR000014: IPR001610: IPR003018: IPR003661: IPR 003594: IPR001789: IPR013767: IPR013655: IPR013656; KEGG: rba:RB641 sensory histidine protein kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold; GAF; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS; PAC motif; Signal transduction response regulator, receiver domain; SPTR: Two-component sensor histidine kinase; TIGRFAM: PAS; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004269999.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_0880 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase YP_004270000.1 COGs: COG0076 glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: sti:Sthe_2364 pyridoxal-dependent decarboxylase; PFAM: pyridoxal phosphate-dependent decarboxylase; PRIAM: glutamate decarboxylase; SPTR: pyridoxal-dependent decarboxylase; PFAM: pyridoxal-dependent decarboxylase conserved domain YP_004270001.1 COGs: COG3386 gluconolactonase; InterPro IPR013658; KEGG: npu:Npun_R6059 SMP-30/gluconolaconase/LRE domain-containing protein; PFAM: SMP-30/gluconolaconase/LRE-like region; PRIAM: gluconolactonase; SPTR: gluconolactonase; PFAM: SMP-30/gluconolaconase/LRE-like region YP_004270002.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: plm:Plim_0836 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: glutamine--scyllo-inositol transaminase; SPTR: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004270004.1 InterPro IPR008160; KEGG: tet:TTHERM_00585170 Dentin sialophosphoprotein precursor, PFAM: Collagen triple helix repeat; SPTR: C-terminal crystallin fold containing protein 11p; PFAM: Collagen triple helix repeat (20 copies) YP_004270005.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: plm:Plim_1365 cobyrinic acid ac-diamide synthase; SPTR: cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004270006.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: cyn:Cyan7425_0319 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SPTR: uncharacterized protein; PFAM: Flavin reductase like domain YP_004270007.1 COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: plm:Plim_1918 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: type II secretion system protein E; PFAM: type II/IV secretion system protein YP_004270008.1 COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: plm:Plim_1917 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: Secretion system protein TadB; PFAM: Bacterial type II secretion system protein F domain YP_004270009.1 COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: plm:Plim_1916 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004270010.1 KEGG: plm:Plim_4146 hypothetical protein; SPTR: uncharacterized protein YP_004270011.1 COGs: COG1278 Cold shock protein; InterPro IPR011129: IPR002059; KEGG: sat:SYN_01437 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain YP_004270012.1 InterPro IPR006311; KEGG: psl:Psta_3814 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3500) YP_004270013.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: plm:Plim_1385 rhomboid family protein; PFAM: peptidase S54, rhomboid; SPTR: Probable glpG protein; PFAM: protein of unknown function (DUF3582); Rhomboid family YP_004270014.1 COGs: COG1052 lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: psl:Psta_2972 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: phosphoglycerate dehydrogenase; SPTR: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004270015.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: plm:Plim_1969 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: uncharacterized protein; PFAM: RmlD substrate binding domain YP_004270016.1 COGs: COG0824 thioesterase; InterPro IPR006684: IPR006683; KEGG: rba:RB8265 a thioesterase; PFAM: thioesterase superfamily; SPTR: uncharacterized protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004270017.1 KEGG: caa:Caka_2926 hypothetical protein; SPTR: uncharacterized protein; PFAM: Natural resistance-associated macrophage protein YP_004270018.1 COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: plm:Plim_0328 protein of unknown function DUF423; PFAM: protein of unknown function DUF423; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF423) YP_004270019.1 KEGG: plm:Plim_3837 hypothetical protein; SPTR: uncharacterized protein YP_004270020.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: plm:Plim_4169 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004270021.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822: IPR002033; KEGG: plm:Plim_2680 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004270022.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_0221 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: uncharacterized protein YP_004270023.1 InterPro IPR007899; KEGG: aeh:Mlg_2423 CHAD domain-containing protein; PFAM: CHAD; SPTR: uncharacterized protein; PFAM: CHAD domain YP_004270024.1 KEGG: ere:EUBREC_2143 hypothetical protein; SPTR: uncharacterized protein YP_004270025.1 COGs: COG1225 peroxiredoxin; InterPro IPR000866; KEGG: saz:Sama_0807 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004270026.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB1477 arylsulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004270027.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB9192 arylsulphatase A; PFAM: Sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004270028.1 KEGG: plm:Plim_4152 hypothetical protein; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain YP_004270029.1 COGs: COG0407 uroporphyrinogen-III decarboxylase; HAMAP: uroporphyrinogen decarboxylase HemE; InterPro IPR006361: IPR000257; KEGG: plm:Plim_2287 uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); PRIAM: uroporphyrinogen decarboxylase; SPTR: uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase HemE; PFAM: uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase; methyltransferase, MtaA/CmuA family YP_004270030.1 COGs: COG1232 protoporphyrinogen oxidase; InterPro IPR004572: IPR002937; KEGG: plm:Plim_2286 protoporphyrinogen oxidase; PFAM: Amine oxidase; PRIAM: protoporphyrinogen oxidase; SPTR: protoporphyrinogen IX and coproporphyrinogen III oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase YP_004270031.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; KEGG: plm:Plim_1369 type II secretion system protein E; SPTR: general secretion pathway protein E; PFAM: type II/IV secretion system protein YP_004270032.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: dihydrodipicolinate synthase; InterPro IPR005263: IPR002220; KEGG: plm:Plim_1370 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase subfamily; PFAM: dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_004270033.1 COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115; KEGG: psl:Psta_0108 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: 2-hydroxy-3-oxopropionate reductase; SPTR: 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase YP_004270034.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: plm:Plim_1235 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase YP_004270035.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_1234 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004270036.1 COGs: COG0777 acetyl-CoA carboxylase subunit beta; HAMAP: acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000438: IPR000022; KEGG: plm:Plim_0650 acetyl-CoA carboxylase, carboxyl transferase subunit beta; PFAM: carboxyl transferase; PRIAM: acetyl-CoA carboxylase; SPTR: acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; TIGRFAM: acetyl-CoA carboxylase carboxyl transferase, beta subunit; PFAM: carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_004270037.1 COGs: COG0406 fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: psl:Psta_1419 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SPTR: Probable phosphoglycerate mutase; PFAM: phosphoglycerate mutase family YP_004270038.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: plm:Plim_0648 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: ribulose-phosphate 3-epimerase; SPTR: ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_004270039.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: psl:Psta_3389 hypothetical protein; PFAM: pyrrolo-quinoline quinone repeat; SPTR: Probable polyvinylalcohol dehydrogenase YP_004270040.1 COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003593: IPR005936: IPR003959: IPR000642; KEGG: plm:Plim_0067 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; peptidase M41; PRIAM: microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: cell division protein FtsH; TIGRFAM: peptidase M41, FtsH; PFAM: peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004270041.1 KEGG: plm:Plim_1250 hypothetical protein; SPTR: uncharacterized protein YP_004270042.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: plm:Plim_1485 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_004270043.1 COGs: COG0704 phosphate uptake regulator; InterPro IPR008170; KEGG: plm:Plim_1486 phosphate transporter regulatory protein PhoU; PFAM: PhoU; SPTR: phosphate transporter regulatory protein PhoU; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transporter regulatory protein PhoU YP_004270044.1 COGs: COG1117 ABC-type phosphate transporter ATPase component; InterPro IPR003593: IPR005670: IPR003439; KEGG: plm:Plim_1487 phosphate ABC transporter ATPase; PFAM: ABC transporter-like; PRIAM: phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: phosphate ABC transporter ATPase; TIGRFAM: phosphate transporter permease protein 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter ATP-binding protein YP_004270045.1 COGs: COG0581 ABC-type phosphate transporter permease; InterPro IPR005672: IPR000515; KEGG: plm:Plim_1488 phosphate ABC transporter inner membrane subunit PstA; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: phosphate transporter permease 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter permease protein PstA YP_004270046.1 COGs: COG0573 ABC-type phosphate transporter permease; InterPro IPR011864: IPR000515; KEGG: plm:Plim_1489 phosphate ABC transporter inner membrane subunit PstC; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: phosphate ABC transporter permease PstC; phosphate ABC transporter permease PstA YP_004270047.1 COGs: COG0226 ABC-type phosphate transporter periplasmic component; InterPro IPR011862; KEGG: aoe:Clos_1116 phosphate binding protein; SPTR: phosphate binding protein; TIGRFAM: phosphate binding protein; TIGRFAM: phosphate binding protein YP_004270048.1 InterPro IPR013216; KEGG: plm:Plim_3211 methyltransferase type 12; PFAM: methyltransferase type 11; SPTR: methyltransferase type 12; PFAM: methyltransferase domain YP_004270049.1 KEGG: psl:Psta_4397 serine/threonine protein kinase; SPTR: Chemotaxis sensory transducer YP_004270050.1 KEGG: gga:395759 solute carrier family 8 (sodium-calcium exchanger), member 3; SPTR: Probable sodium extrusion protein NatB YP_004270051.1 COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase B; InterPro IPR014780: IPR002501; KEGG: psl:Psta_2809 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; SPTR: TRNA pseudouridine synthase B; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; PFAM: Pseudouridine synthase II TruB, C-terminal; TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004270052.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645: IPR013221: IPR004101; KEGG: psl:Psta_2390 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: Tetrahydrofolate synthase; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004270053.1 KEGG: hps:HPSH_04430 sodium- and chloride-dependent transporter; SPTR: transporter YP_004270054.1 InterPro IPR009875; KEGG: plm:Plim_0624 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: uncharacterized protein; PFAM: PilZ domain YP_004270055.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: caa:Caka_2657 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004270056.1 KEGG: plm:Plim_0342 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2817) YP_004270057.1 KEGG: plm:Plim_1705 hypothetical protein; SPTR: uncharacterized protein YP_004270058.1 InterPro IPR001330; KEGG: plm:Plim_0306 A-macroglobulin complement component; PFAM: prenyltransferase/squalene oxidase; SPTR: uncharacterized protein YP_004270059.1 KEGG: plm:Plim_3511 hypothetical protein; SPTR: uncharacterized protein YP_004270060.1 KEGG: plm:Plim_0501 hypothetical protein; SPTR: uncharacterized protein; PFAM: HEAT repeat YP_004270061.1 KEGG: cyu:UCYN_11800 Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; SPTR: uncharacterized protein YP_004270062.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: heat shock protein HslU; InterPro IPR004491: IPR003593: IPR013093; KEGG: ddf:DEFDS_2156 ATP-dependent protease HslVU, ATPase HslU; PFAM: ATPase, AAA-2; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase HslU; TIGRFAM: heat shock protein HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent protease HslVU, ATPase YP_004270063.1 COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease hslV; InterPro IPR001353; KEGG: lbl:LBL_1508 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit YP_004270064.1 KEGG: plm:Plim_3163 hypothetical protein; SPTR: uncharacterized protein; PFAM: SlyX YP_004270065.1 KEGG: plm:Plim_0259 hypothetical protein; SPTR: uncharacterized protein YP_004270066.1 KEGG: plm:Plim_0258 pyrrolo-quinoline quinone; SPTR: uncharacterized protein YP_004270067.1 COGs: COG0239 integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: dal:Dalk_4287 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: protein crcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004270068.1 KEGG: cbf:CLI_1278 monovalent cation:proton antiporter-2 (CPA2) family protein; SPTR: uncharacterized protein YP_004270069.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: plm:Plim_3622 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich domain YP_004270070.1 KEGG: plm:Plim_3249 hypothetical protein; SPTR: uncharacterized protein YP_004270071.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: rba:RB6042 hemolysin protein; PFAM: protein of unknown function DUF21; cystathionine beta-synthase, core; transporter-associated domain; SPTR: Hemolysin protein; PFAM: CBS domain; Domain of unknown function DUF21; transporter associated domain YP_004270072.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550; KEGG: rba:RB6040 hemolysin protein; PFAM: protein of unknown function DUF21; SPTR: Probable hemolysin protein; PFAM: Domain of unknown function DUF21 YP_004270073.1 KEGG: plm:Plim_2727 hypothetical protein; SPTR: glutaminyl-tRNA synthetase YP_004270074.1 InterPro IPR010432; KEGG: plm:Plim_0068 hypothetical protein; PFAM: RDD; SPTR: uncharacterized protein; PFAM: RDD family YP_004270075.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_3515 tetratricopeptide TPR_4; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein YP_004270076.1 KEGG: psl:Psta_4334 hypothetical protein; SPTR: uncharacterized protein YP_004270077.1 KEGG: plm:Plim_3954 flagellar basal-body rod protein FlgB; SPTR: Probable flagellar basal-body rod protein FlgB YP_004270078.1 COGs: COG1558 flagellar basal body rod protein; InterPro IPR006299: IPR010930; KEGG: plm:Plim_3955 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078, C-terminal; SPTR: flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC YP_004270079.1 HAMAP: flagellar hook-basal body complex protein FliE; InterPro IPR001624; KEGG: plm:Plim_3956 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: flagellar hook-basal body complex protein fliE; TIGRFAM: flagellar hook-basal body complex protein FliE; PFAM: flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE YP_004270080.1 COGs: COG1766 flagellar biosynthesis/type III secretory pathway lipoprotein; KEGG: plm:Plim_3095 secretory protein YscJ/FliF family protein; SPTR: Probable polar flagellar M-ring protein FliF YP_004270081.1 COGs: COG1536 flagellar motor switch protein; InterPro IPR000090; KEGG: plm:Plim_3096 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; SPTR: flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG YP_004270082.1 COGs: COG1317 flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: plm:Plim_3097 flagellar assembly protein FliH; PFAM: flagellar assembly protein FliH/type III secretion system HrpE; SPTR: flagellar assembly protein fliH, ; PFAM: flagellar assembly protein FliH YP_004270083.1 COGs: COG1157 flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR005714: IPR003593: IPR004100: IPR000194; KEGG: plm:Plim_3098 ATPase, FliI/YscN family; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SMART: ATPase, AAA+ type, core; SPTR: Flagellum-specific ATP synthase; TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family YP_004270084.1 KEGG: plm:Plim_3099 hypothetical protein; SPTR: uncharacterized protein; PFAM: flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ YP_004270085.1 KEGG: plm:Plim_3100 hypothetical protein; SPTR: uncharacterized protein YP_004270086.1 InterPro IPR021136; KEGG: psl:Psta_4346 flagellar hook-length control protein; PFAM: flagellar hook-length control protein-like, C-terminal domain; SPTR: flagellar hook-length control protein; PFAM: flagellar hook-length control protein FliK YP_004270087.1 COGs: COG1843 flagellar hook capping protein; InterPro IPR005648; KEGG: plm:Plim_3102 flagellar hook capping protein; PFAM: flagellar hook capping protein; SPTR: Probable basal-body rod modification protein FlgD; PFAM: flagellar hook capping protein YP_004270088.1 COGs: COG1749 flagellar hook protein FlgE; InterPro IPR020013: IPR001444: IPR011491: IPR010930; KEGG: plm:Plim_3682 flagellar basal body FlaE domain protein; PFAM: flagellar basal body FlaE; flagellar basal body rod protein, N-terminal; protein of unknown function DUF1078, C-terminal; SPTR: flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); flagellar basal body protein FlaE; TIGRFAM: flagellar basal-body rod protein FlgB; fagellar hook-basal body proteins YP_004270089.1 COGs: COG1582 Uncharacterized protein possibly involved in motility; InterPro IPR009384; KEGG: psl:Psta_4349 flagellar FlbD family protein; PFAM: flagellar; SPTR: uncharacterized protein; PFAM: flagellar protein (FlbD) YP_004270090.1 COGs: COG1291 flagellar motor component; InterPro IPR002898; KEGG: psl:Psta_4350 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Chemotaxis pomA protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004270091.1 COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: psl:Psta_4351 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: uncharacterized protein; PFAM: OmpA family YP_004270092.1 InterPro IPR005503; KEGG: psl:Psta_4352 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; SPTR: uncharacterized protein; PFAM: flagellar basal body-associated protein FliL YP_004270093.1 COGs: COG1886 flagellar motor switch/type III secretory pathway protein; InterPro IPR012826: IPR001543; KEGG: psl:Psta_4353 flagellar motor switch protein FliN; PFAM: Surface presentation of antigen (SpoA); SPTR: flagellar motor switch protein fliN; TIGRFAM: flagellar motor switch FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN YP_004270094.1 KEGG: plm:Plim_4068 flagellar biosynthesis protein FliO; SPTR: uncharacterized protein; PFAM: flagellar biosynthesis protein, FliO YP_004270095.1 COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005837: IPR005838; KEGG: plm:Plim_4067 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: flagellar biosynthetic protein fliP- transporter of flagellar protein; TIGRFAM: flagellar transporter FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP YP_004270096.1 COGs: COG1987 flagellar biosynthesis pathway component FliQ; InterPro IPR006305: IPR002191; KEGG: rso:RSp0374 flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3; SPTR: Probable flagellar biosynthetic fliq transmembrane protein; TIGRFAM: flagellar biosynthesis protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: type III secretion protein, HrpO family; flagellar biosynthetic protein FliQ YP_004270097.1 COGs: COG1684 flagellar biosynthesis pathway component FliR; InterPro IPR002010; KEGG: plm:Plim_4065 type III secretion system inner membrane R protein; PFAM: type III secretion system inner membrane R protein; SPTR: flagellar biosynthetic protein fliR/B; PFAM: Bacterial export proteins, family 1 YP_004270098.1 COGs: COG1377 flagellar biosynthesis pathway component FlhB; InterPro IPR006136: IPR006135; KEGG: plm:Plim_1391 flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; SPTR: flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB YP_004270099.1 COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR003607; KEGG: plm:Plim_3322 metal-dependent phosphohydrolase HD sub domain protein; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; PFAM: HD domain YP_004270100.1 KEGG: cfa:607751 huntingtin-associated protein 1; SPTR: uncharacterized protein YP_004270101.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426: IPR000583: IPR001962; KEGG: nde:NIDE2699 asparagine synthase; PFAM: Asparagine synthase; glutamine amidotransferase, class-II; SPTR: Asparagine synthetase, glutamine-hydrolyzing; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004270102.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: plm:Plim_3292 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004270103.1 COGs: COG0008 glutamyl- and glutaminyl-tRNA synthetase; HAMAP: glutaminyl-tRNA synthetase; InterPro IPR004514: IPR020058: IPR020059; KEGG: plm:Plim_3486 glutaminyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: glutamine--tRNA ligase; SPTR: glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase, class Ic; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase YP_004270104.1 COGs: COG0008 glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020058; KEGG: plm:Plim_2659 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: glutamate--tRNA ligase; SPTR: glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004270105.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR003593: IPR002543: IPR018541; KEGG: plm:Plim_2063 cell division FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase, AAA+ type, core; SPTR: cell division FtsK/SpoIIIE; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_004270106.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; HAMAP: UPF0173 metal-dependent hydrolase; KEGG: bcz:BCZK4354 metal-dependent hydrolase; SPTR: metal-dependent hydrolase; PFAM: metallo-beta-lactamase superfamily YP_004270107.1 KEGG: psl:Psta_2628 regulatory protein, FmdB family; SPTR: Regulatory protein, FmdB family YP_004270108.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR006675: IPR000160: IPR003607: IPR006674; KEGG: plm:Plim_3823 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; metal-dependent phosphohydrolase, HD subdomain; SMART: Diguanylate cyclase, predicted; metal-dependent phosphohydrolase, HD domain; SPTR: Probable response regulatory protein; TIGRFAM: Diguanylate cyclase, predicted; HDIG; PFAM: HD domain; GGDEF domain; TIGRFAM: uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain YP_004270109.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: hau:Haur_3981 methyltransferase type 12; PFAM: methyltransferase type 11; SPTR: methyltransferase type 12; PFAM: methyltransferase domain YP_004270110.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683; KEGG: plm:Plim_3924 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270111.1 InterPro IPR001845; KEGG: rba:RB11223 metal-dependent regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory protein, arsR family YP_004270112.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rba:RB11225 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2892); Rhodanese-like domain YP_004270113.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: nhl:Nhal_2910 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: beta-lactamase domain protein; PFAM: metallo-beta-lactamase superfamily; Rhodanese-like domain YP_004270114.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: tcx:Tcr_0174 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004270115.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: rba:RB11227 hypothetical protein; PFAM: Rhodanese-like; SPTR: uncharacterized protein; PFAM: metallo-beta-lactamase superfamily; Rhodanese-like domain YP_004270116.1 InterPro IPR012440; KEGG: srm:SRM_00398 hypothetical protein; PFAM: protein of unknown function DUF1641; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1641) YP_004270117.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; KEGG: psl:Psta_0464 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004270118.1 COGs: COG1858 cytochrome C peroxidase; InterPro IPR004852; KEGG: mca:MCA0345 cytochrome C peroxidase family protein; PFAM: Di-haem cytochrome C peroxidase; PRIAM: cytochrome-c peroxidase; SPTR: cytochrome C peroxidase family protein; PFAM: Di-haem cytochrome C peroxidase YP_004270119.1 KEGG: rba:RB11231 hypothetical protein; SPTR: uncharacterized protein; PFAM: DsrE/DsrF-like family YP_004270120.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_02130 arylsulfatase A precursor; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004270121.1 KEGG: plm:Plim_2373 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF502) YP_004270122.1 KEGG: psl:Psta_0762 hypothetical protein; SPTR: uncharacterized protein YP_004270123.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR017568: IPR014030: IPR014031; KEGG: plm:Plim_2564 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004270124.1 HAMAP: acyl carrier protein (ACP); InterPro IPR003231: IPR006163; KEGG: plm:Plim_2565 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: acyl carrier protein; TIGRFAM: acyl carrier protein (ACP); PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004270125.1 KEGG: rba:RB8980 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004270126.1 KEGG: psl:Psta_0237 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004270127.1 KEGG: rba:RB9480 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004270128.1 KEGG: rba:RB8295 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004270129.1 KEGG: sli:Slin_1513 protein of unknown function DUF326; SPTR: uncharacterized protein YP_004270130.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR006286: IPR002818; KEGG: rba:RB4394 proteinase I; PFAM: ThiJ/PfpI; SPTR: proteinase I; TIGRFAM: peptidase C56, PfpI; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease PfpI family YP_004270131.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410: IPR014043; KEGG: plm:Plim_2566 malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; PRIAM: [acyl-carrier-protein] S-malonyltransferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004270132.1 COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: phospholipid biosynthesis protein, PlsX like; InterPro IPR012281: IPR003664; KEGG: plm:Plim_2567 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; SPTR: phosphate acyltransferase; TIGRFAM: phospholipid biosynthesis protein, PlsX like; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_004270133.1 HAMAP: ribosomal protein L32p; InterPro IPR002677; KEGG: psl:Psta_1724 ribosomal protein L32; PFAM: ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32p; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004270134.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006225: IPR006145; KEGG: plm:Plim_2588 pseudouridine synthase, RluA family; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase, RluA family; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase YP_004270135.1 InterPro IPR006652: IPR011498; KEGG: plm:Plim_2580 kelch repeat-containing protein; PFAM: Kelch repeat type 1; Kelch repeat type 2; SMART: Kelch repeat type 1; SPTR: uncharacterized protein; PFAM: Kelch motif YP_004270136.1 KEGG: mxa:MXAN_7361 hypothetical protein; SPTR: uncharacterized protein YP_004270137.1 InterPro IPR012902; KEGG: rba:RB10099 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270138.1 InterPro IPR019600; KEGG: cvi:CV_3895 hypothetical protein; PFAM: hemic uptake protein hemP; SPTR: uncharacterized protein; PFAM: hemic uptake protein hemP YP_004270139.1 COGs: COG1995 pyridoxal phosphate biosynthesis protein; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: ote:Oter_2150 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PFAM: pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_004270140.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR003018: IPR010822; KEGG: sfu:Sfum_2204 serine phosphatase; PFAM: sporulation stage II, protein E C-terminal; GAF; SMART: protein phosphatase 2C-related; SPTR: serine phosphatase; PFAM: stage II sporulation protein E (SpoIIE) YP_004270141.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: plm:Plim_2264 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004270142.1 KEGG: plm:Plim_2263 hypothetical protein; SPTR: uncharacterized protein YP_004270143.1 COGs: COG1868 flagellar motor switch protein; InterPro IPR001689: IPR001543; KEGG: plm:Plim_2500 flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); SPTR: flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM YP_004270144.1 COGs: COG0014 gamma-glutamyl phosphate reductase; HAMAP: glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134: IPR000965: IPR015590; KEGG: psl:Psta_3777 gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; PRIAM: glutamate-5-semialdehyde dehydrogenase; SPTR: gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase GPR; PFAM: aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_004270145.1 KEGG: asa:ASA_3743 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004270146.1 COGs: COG4566 Response regulator; InterPro IPR001789: IPR000792; KEGG: bph:Bphy_0645 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two component LuxR family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004270147.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterPro IPR004605: IPR003593: IPR008824: IPR003959: IPR 008823; KEGG: plm:Plim_2430 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, Ruvsubunit beta YP_004270148.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR002123: IPR011701: IPR000873; KEGG: plm:Plim_2369 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; PRIAM: acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: AMP-dependent synthetase and ligase; PFAM: acyltransferase; AMP-binding enzyme; Major Facilitator Superfamily; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004270149.1 KEGG: rba:RB1272 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF993) YP_004270150.1 KEGG: ddi:DDB_G0279835 hypothetical protein; SPTR: uncharacterized protein YP_004270151.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: rba:RB3710 hypothetical protein; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: uncharacterized protein; PFAM: acetyltransferase (GNAT) family; carbon-nitrogen hydrolase YP_004270152.1 KEGG: srm:SRM_01765 hypothetical protein; SPTR: uncharacterized protein YP_004270153.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: nhl:Nhal_1456 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Fused predicted transporter subunit of ABC superfamily: ATP-binding component; TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family YP_004270154.1 COGs: COG0498 threonine synthase; InterPro IPR004450: IPR001926; KEGG: plm:Plim_2963 threonine synthase; PFAM: pyridoxal phosphate-dependent enzyme subunit beta; PRIAM: threonine synthase; SPTR: threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_004270155.1 KEGG: plm:Plim_2964 hypothetical protein; SPTR: uncharacterized protein YP_004270156.1 COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: psl:Psta_3875 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase / nucleotide pyrophosphatase YP_004270157.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: psl:Psta_2960 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004270158.1 KEGG: plm:Plim_0274 protein of unknown function DUF1569; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1569) YP_004270159.1 COGs: COG3296 conserved hypothetical protein; KEGG: sli:Slin_4452 hypothetical protein; SPTR: uncharacterized protein YP_004270160.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: rba:RB3342 hypothetical protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase YP_004270161.1 InterPro IPR007404; KEGG: psl:Psta_4226 hypothetical protein; PFAM: protein of unknown function DUF457, transmembrane; SPTR: uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457) YP_004270162.1 COGs: COG2114 adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054: IPR000253; KEGG: psl:Psta_0601 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Forkhead-associated; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Probable adenylate cyclase; PFAM: adenylate and Guanylate cyclase catalytic domain; FHA domain YP_004270163.1 COGs: COG0188 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) subunit alpha; InterPro IPR005743: IPR002205: IPR006691; KEGG: plm:Plim_2267 DNA gyrase subunit alpha; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase A subunit YP_004270164.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_1793 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: Lipopolysaccharide core biosynthesis glycosyl transferase lpsD; PFAM: glycosyl transferases group 1 YP_004270165.1 COGs: COG0622 phosphoesterase; InterPro IPR000979: IPR004843; KEGG: psl:Psta_2298 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: phosphodiesterase MJ0936; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_004270166.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: plm:Plim_1189 mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_004270167.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593: IPR007831: IPR001482; KEGG: plm:Plim_0410 type II secretion system protein E; PFAM: type II secretion system protein E; general secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: type II secretion system protein E; PFAM: GSPII_E N-terminal domain; type II/IV secretion system protein YP_004270168.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR001482: IPR013256; KEGG: plm:Plim_0409 twitching motility protein; PFAM: type II secretion system protein E; Chromatin SPT2; SPTR: Twitching mobility protein PilT; TIGRFAM: pilus retraction protein PilT; PFAM: type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004270169.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593: IPR007831: IPR001482; KEGG: plm:Plim_0408 type II secretion system protein E; PFAM: type II secretion system protein E; general secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: type II secretion system protein E; PFAM: type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E YP_004270170.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: plm:Plim_0407 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004270171.1 InterPro IPR012902; KEGG: plm:Plim_0406 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270172.1 InterPro IPR012902; KEGG: plm:Plim_0405 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270173.1 InterPro IPR012902; KEGG: plm:Plim_0404 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270174.1 InterPro IPR012902; KEGG: plm:Plim_0403 hypothetical protein; SPTR: uncharacterized protein YP_004270175.1 InterPro IPR012902; KEGG: plm:Plim_0402 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270176.1 KEGG: plm:Plim_0401 hypothetical protein; SPTR: uncharacterized protein YP_004270177.1 KEGG: rer:RER_13180 polysaccharide biosynthesis protein; SPTR: polysaccharide biosynthesis protein YP_004270178.1 InterPro IPR012902; KEGG: plm:Plim_0304 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270179.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); InterPro IPR002881; KEGG: psl:Psta_2700 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004270180.1 KEGG: hth:HTH_0138 (p)ppGpp 3-pyrophosphohydrolase YP_004270181.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR005905: IPR011127: IPR011095; KEGG: plm:Plim_0009 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004270182.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_4042 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004270183.1 KEGG: plm:Plim_2074 hypothetical protein; SPTR: Probable secreted protein- xanthan lyase related YP_004270184.1 KEGG: plm:Plim_0938 hypothetical protein; SPTR: uncharacterized protein YP_004270185.1 KEGG: plm:Plim_1178 hypothetical protein; SPTR: uncharacterized protein YP_004270186.1 KEGG: cmi:CMM_1037 metal-transporting ATPase; SPTR: uncharacterized protein YP_004270187.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mpd:MCP_0244 hypothetical protein; PFAM: methyltransferase type 11; SPTR: glycosyl transferase, family 2; PFAM: methyltransferase domain YP_004270188.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: dat:HRM2_45610 Amt; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter Family; TIGRFAM: ammonium transporter; TC 1.A.11 YP_004270189.1 COGs: COG0347 nitrogen regulatory protein PII; InterPro IPR002187; KEGG: lhk:LHK_01236 GlnB; PFAM: nitrogen regulatory protein PII; SPTR: GlnB; PFAM: nitrogen regulatory protein P-II YP_004270190.1 COGs: COG1858 cytochrome C peroxidase; InterPro IPR004852; KEGG: rba:RB304 cytochrome-c peroxidase; PFAM: Di-haem cytochrome C peroxidase; PRIAM: cytochrome-c peroxidase; SPTR: cytochrome-c peroxidase; PFAM: cytochrome C; Di-haem cytochrome C peroxidase YP_004270191.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318: IPR018164: IPR012947: IPR003156; KEGG: plm:Plim_2551 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; threonyl/alanyl tRNA synthetase, SAD; phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004270192.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: psl:Psta_2150 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; SPTR: uncharacterized protein YP_004270193.1 KEGG: plm:Plim_1849 hypothetical protein; SPTR: uncharacterized protein YP_004270194.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529: IPR004188: IPR002319; KEGG: plm:Plim_2505 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha YP_004270195.1 COGs: COG0292 ribosomal protein L20; HAMAP: ribosomal protein L20; InterPro IPR005813; KEGG: rba:RB7115 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004270196.1 COGs: COG0291 ribosomal protein L35; HAMAP: ribosomal protein L35, non-mitochondrial; InterPro IPR001706: IPR021137; KEGG: plm:Plim_2502 ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35, non-mitochondrial; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004270197.1 COGs: COG0290 translation initiation factor 3 (IF-3); InterPro IPR001288: IPR019814: IPR019815; KEGG: plm:Plim_2501 translation initiation factor IF-3; PFAM: translation initiation factor 3, C-terminal; translation initiation factor 3, N-terminal; SPTR: translation initiation factor IF-3; TIGRFAM: translation initiation factor 3; manually curated; PFAM: translation initiation factor IF-3, C-terminal domain; translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004270198.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_2555 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein YP_004270199.1 InterPro IPR010298; KEGG: plm:Plim_2270 protein of unknown function DUF901; PFAM: protein of unknown function DUF901; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF901) YP_004270200.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: plm:Plim_2311 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Predicted amidohydrolase; PFAM: carbon-nitrogen hydrolase YP_004270201.1 KEGG: plm:Plim_2021 hypothetical protein; SPTR: uncharacterized protein YP_004270202.1 COGs: COG0767 ABC-type transporter involved in resistance to organic solvents permease; InterPro IPR003453; KEGG: plm:Plim_2064 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; SPTR: Probable permease of ABC transporter; TIGRFAM: protein of unknown function DUF140; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004270203.1 COGs: COG1127 ABC-type transporter involved in resistance to organic solvents ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_2065 ABC transporter; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter YP_004270204.1 COGs: COG1463 ABC-type transporter involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: plm:Plim_2066 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: uncharacterized protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein YP_004270205.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: rba:RB2764 signal peptide; PFAM: hypothetical protein; protein of unknown function DUF1592; protein of unknown function DUF1587; protein of unknown function DUF1595; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); protein of unknown function (DUF1595); protein of unknown function (DUF1585) YP_004270206.1 InterPro IPR011447; KEGG: rba:RB2763 signal peptide; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270207.1 COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099: IPR001509: IPR013549; KEGG: plm:Plim_1109 NAD-dependent epimerase/dehydratase; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777 YP_004270208.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101; KEGG: plm:Plim_0012 Mur ligase middle domain protein; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004270209.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170: IPR006094: IPR011601; KEGG: plm:Plim_0011 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase N-terminal; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004270210.1 KEGG: plm:Plim_1608 hypothetical protein; SPTR: uncharacterized protein YP_004270211.1 KEGG: plm:Plim_2546 hypothetical protein; SPTR: uncharacterized protein YP_004270212.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270213.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270214.1 COGs: COG2124 cytochrome P450; InterPro IPR001128; KEGG: bja:blr3832 cytochrome P450; PFAM: cytochrome P450; SPTR: Blr3832 protein; PFAM: cytochrome P450 YP_004270215.1 KEGG: ptm:GSPATT00038669001 hypothetical protein; SPTR: chromosome undetermined scaffold_205, whole genome shotgun sequence YP_004270216.1 COGs: COG0631 serine/threonine protein phosphatase; InterPro IPR001932: IPR014045; KEGG: plm:Plim_2087 phosphoprotein phosphatase; PFAM: protein phosphatase 2C, N-terminal; SMART: protein phosphatase 2C-related; SPTR: Probable protein phosphatase 1; PFAM: protein phosphatase 2C YP_004270217.1 COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: she:Shewmr4_2289 hypothetical protein; PFAM: protein of unknown function DUF124; SPTR: uncharacterized protein; TIGRFAM: protein of unknown function DUF124; PFAM: protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266 YP_004270218.1 COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: gur:Gura_1842 UbiD family decarboxylase; PFAM: carboxylyase-related; SPTR: carboxylyase-related protein; TIGRFAM: carboxylyase-related; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases YP_004270219.1 KEGG: plm:Plim_3756 hypothetical protein; SPTR: uncharacterized protein YP_004270220.1 COGs: COG3651 conserved hypothetical protein; InterPro IPR018714; KEGG: plm:Plim_1977 hypothetical protein; PFAM: protein of unknown function DUF2237; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2237) YP_004270221.1 KEGG: plm:Plim_0421 hypothetical protein; SPTR: uncharacterized protein YP_004270222.1 InterPro IPR002781; KEGG: sde:Sde_2917 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004270223.1 COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); HAMAP: arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: plm:Plim_1589 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_004270224.1 COGs: COG0142 geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: plm:Plim_2441 polyprenyl synthetase; PFAM: polyprenyl synthetase; SPTR: geranylgeranyl pyrophosphate synthetase (Precursor); PFAM: polyprenyl synthetase YP_004270225.1 COGs: COG1154 deoxyxylulose-5-phosphate synthase; HAMAP: deoxyxylulose-5-phosphate synthase; InterPro IPR005477: IPR005475: IPR005476; KEGG: plm:Plim_2440 deoxyxylulose-5-phosphate synthase; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase, C-terminal domain; transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004270226.1 KEGG: ccs:CCNA_02359 hypothetical protein; SPTR: uncharacterized protein YP_004270227.1 KEGG: psl:Psta_4352 flagellar basal body-associated protein FliL; SPTR: dihydrolipoamide acetyltransferase-like protein; PFAM: flagellar basal body-associated protein FliL YP_004270228.1 COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232; KEGG: psl:Psta_4402 ExsB family protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00268; TIGRFAM: conserved hypothetical protein TIGR00268 YP_004270229.1 KEGG: plm:Plim_2184 planctomycete cytochrome C; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C YP_004270230.1 COGs: COG0665 glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: psl:Psta_4394 glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; PRIAM: D-amino-acid dehydrogenase; SPTR: Probable D-amino acid oxidase; PFAM: FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO YP_004270231.1 KEGG: bhe:BH05490 hypothetical protein; SPTR: uncharacterized protein YP_004270232.1 InterPro IPR006311; KEGG: plm:Plim_1667 hypothetical protein; SPTR: uncharacterized protein YP_004270233.1 KEGG: plm:Plim_1668 hypothetical protein; SPTR: uncharacterized protein YP_004270234.1 KEGG: sto:ST1723 hypothetical protein; SPTR: TagA-related protein YP_004270235.1 KEGG: psl:Psta_2896 hypothetical protein; SPTR: uncharacterized protein YP_004270236.1 COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: plm:Plim_2361 ATP-dependent nuclease subunit B-like protein; SPTR: ATP-dependent deoxyribonuclease subunit B YP_004270237.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: plm:Plim_1377 exodeoxyribonuclease V; PFAM: DNA helicase, UvrD/REP type; PRIAM: exodeoxyribonuclease V; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase; TIGRFAM: recombination helicase AddA, Firmicutes type YP_004270238.1 InterPro IPR000241; KEGG: plm:Plim_2351 hypothetical protein; PFAM: RNA methylase; SPTR: uncharacterized protein; PFAM: RNA cap guanine-N2 methyltransferase YP_004270239.1 KEGG: pag:PLES_55111 small-conductance mechanosensitive channel; SPTR: uncharacterized protein YP_004270240.1 KEGG: vei:Veis_3953 ABC transporter; SPTR: uncharacterized protein YP_004270241.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: plm:Plim_2348 oxidoreductase; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: uncharacterized protein; PFAM: oxidoreductase family, C-terminal alpha/beta domain; oxidoreductase family, NAD-binding Rossmann fold YP_004270242.1 KEGG: plm:Plim_2350 hypothetical protein; SPTR: uncharacterized protein YP_004270243.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: plm:Plim_2084 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Sigma-54 factor interaction domain-containing protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004270245.1 KEGG: plm:Plim_2362 hypothetical protein; SPTR: uncharacterized protein YP_004270246.1 COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: plm:Plim_3471 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: carboxyl-terminal protease; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004270247.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: rba:RB8246 transmembrane protein; PFAM: SCP-like extracellular; SPTR: Probable transmembrane protein; PFAM: Cysteine-rich secretory protein family YP_004270248.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005932: IPR002872: IPR015590; KEGG: psl:Psta_0870 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; SPTR: 1-pyrroline-5 carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase 2; PFAM: Proline dehydrogenase; aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2 YP_004270249.1 COGs: COG1899 deoxyhypusine synthase; InterPro IPR002773; KEGG: cyb:CYB_2420 deoxyhypusine synthase family protein; PFAM: deoxyhypusine synthase; SPTR: deoxyhypusine synthase family protein; PFAM: deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase YP_004270250.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: plm:Plim_2145 ferric-uptake regulator; PFAM: ferric-uptake regulator; SPTR: Probable transcription regulator FurR family protein; PFAM: ferric uptake regulator family YP_004270251.1 InterPro IPR007412; KEGG: plm:Plim_2146 anti-sigma-28 factor FlgM family protein; PFAM: anti-sigma-28 factor, FlgM; SPTR: uncharacterized protein; PFAM: anti-sigma-28 factor, FlgM YP_004270252.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004270253.1 COGs: COG1523 type II secretory pathway pullulanase PulA and related glycosidase; InterPro IPR011837: IPR006589: IPR004193: IPR006047; KEGG: plm:Plim_2700 glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain; PRIAM: Isoamylase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_004270254.1 COGs: COG0307 riboflavin synthase alpha chain; InterPro IPR001783; KEGG: plm:Plim_2602 riboflavin synthase, subunit alpha; PFAM: Lumazine-binding protein; PRIAM: riboflavin synthase; SPTR: riboflavin synthase subunit alpha; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, subunit alpha YP_004270255.1 COGs: COG3593 ATP-dependent endonuclease of the OLD family; KEGG: hau:Haur_0681 hypothetical protein; SPTR: uncharacterized protein YP_004270256.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: vap:Vapar_4279 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase YP_004270257.1 KEGG: blt:Balat_1297 ABC-type multidrug transporter ATPase and permease; SPTR: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004270258.1 KEGG: rba:RB8150 signal peptide; SPTR: uncharacterized protein YP_004270259.1 KEGG: bca:BCE_0438 hypothetical protein; SPTR: uncharacterized protein YP_004270260.1 COGs: COG1506 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: psl:Psta_1651 hypothetical protein; SPTR: Probable sialidase; PFAM: acetyl xylan esterase (AXE1) YP_004270261.1 KEGG: pfd:PFDG_01945 conserved hypothetical protein; SPTR: Conserved Plasmodium protein YP_004270262.1 KEGG: dsi:Dsim_GD23003 GD23003 gene product from transcript GD23003-RA; SPTR: uncharacterized protein YP_004270263.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR019546: IPR000683; KEGG: rba:RB5365 NADH-dependent dehydrogenase; PFAM: oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270264.1 COGs: COG3608 deacylase; InterPro IPR007036; KEGG: dat:HRM2_29440 AspA; PFAM: succinylglutamate desuccinylase/aspartoacylase; SPTR: succinate dehydrogenase subunit; PFAM: succinylglutamate desuccinylase / aspartoacylase family YP_004270265.1 COGs: COG0189 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR004666: IPR013651: IPR006037; KEGG: rba:RB7299 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type; Regulator of K+ conductance, C-terminal; SPTR: ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; PFAM: RimK-like ATP-grasp domain; TrkA-C domain; TIGRFAM: alpha-L-glutamate ligases, RimK family YP_004270266.1 InterPro IPR012902; KEGG: rba:RB11101 signal peptide; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270267.1 KEGG: rba:RB11104 hypothetical protein; SPTR: uncharacterized protein YP_004270268.1 KEGG: psl:Psta_0787 hypothetical protein; SPTR: uncharacterized protein YP_004270269.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: plm:Plim_2085 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Probable two-component sensor histidine kinase FixL; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004270271.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: plm:Plim_2341 hypothetical protein; SPTR: uncharacterized protein YP_004270272.1 COGs: COG3267 type II secretory pathway component ExeA (predicted ATPase); KEGG: plm:Plim_2231 ATPase AAA; SPTR: type II secretory pathway, component ExeA (Predicted ATPase) YP_004270273.1 COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: plm:Plim_2232 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH-like protein; PFAM: PhoH-like protein YP_004270274.1 COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR006675: IPR003607: IPR011621: IPR006674; KEGG: plm:Plim_2233 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; metal-dependent phosphohydrolase, 7TM intracellular domain; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; TIGRFAM: HDIG; PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_004270275.1 COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: plm:Plim_2234 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054; SPTR: metalloprotease PM8797T_00232; TIGRFAM: Uncharacterised protein family UPF0054; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_004270276.1 InterPro IPR008775; KEGG: rba:RB9550 hypothetical protein; PFAM: phytanoyl-CoA dioxygenase; SPTR: uncharacterized protein; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004270277.1 KEGG: rpe:RPE_2231 hypothetical protein; SPTR: uncharacterized protein YP_004270278.1 InterPro IPR001107; KEGG: rba:RB8770 hypothetical protein; PFAM: Band 7 protein; SPTR: uncharacterized protein; PFAM: SPFH domain / Band 7 family YP_004270279.1 COGs: COG0330 membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: rba:RB8773 hypothetical protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: uncharacterized protein; PFAM: SPFH domain / Band 7 family YP_004270280.1 COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027; KEGG: afw:Anae109_3945 soluble pyridine nucleotide transhydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004270281.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR002290: IPR017442; KEGG: plm:Plim_2353 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; SPTR: serine/threonine-protein kinase; PFAM: protein kinase domain YP_004270282.1 COGs: COG0105 nucleoside diphosphate kinase; HAMAP: nucleoside diphosphate kinase, core; InterPro IPR001564; KEGG: plm:Plim_2031 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase, core; PRIAM: nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase, core; SPTR: nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase YP_004270283.1 COGs: COG0505 carbamoylphosphate synthase small subunit; InterPro IPR006274: IPR002474: IPR000991; KEGG: psl:Psta_4606 carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl phosphate synthase, small subunit, N-terminal; glutamine amidotransferase class-I, C-terminal; PRIAM: carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: carbamoyl-phosphate synthase small chain; TIGRFAM: carbamoyl phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain, CPSase domain; glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004270284.1 COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: plm:Plim_2033 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family YP_004270285.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB6765 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase; SPTR: N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase YP_004270286.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270287.1 COGs: COG1904 glucuronate isomerase; KEGG: plm:Plim_2160 amidohydrolase 2; SPTR: uncharacterized protein; PFAM: glucuronate isomerase YP_004270288.1 COGs: COG0480 translation elongation factors (GTPase); InterPro IPR004540: IPR005225: IPR000795: IPR004161: IPR 005517: IPR000640; KEGG: plm:Plim_2166 translation elongation factor G; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004270289.1 COGs: COG1767 Triphosphoribosyl-dephospho-CoA synthetase; InterPro IPR002736; KEGG: psl:Psta_4265 triphosphoribosyl-dephospho-CoA protein; PFAM: Triphosphoribosyl-dephospho-CoA protein; SPTR: Triphosphoribosyl-dephospho-CoA protein; PFAM: ATP:dephospho-CoA triphosphoribosyl transferase YP_004270290.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: plm:Plim_2408 hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004270291.1 KEGG: plm:Plim_2646 hypothetical protein; SPTR: Branched-chain amino acid aminotransferase YP_004270292.1 COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: plm:Plim_2514 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: carboxyl-terminal protease; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004270293.1 COGs: COG0533 metal-dependent protease with chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR017861: IPR000905; KEGG: plm:Plim_2513 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: glycoprotein endopeptidase; TIGRFAM: glycoprotease GCP; peptidase M22, glycoprotease subgroup; PFAM: glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004270294.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: plm:Plim_2545 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004270295.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: plm:Plim_2544 DNA binding domain protein, excisionase family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Probable regulatory components of sensory transduction system; PFAM: Response regulator receiver domain; TIGRFAM: DNA binding domain, excisionase family YP_004270296.1 KEGG: syn:sll0371 hypothetical protein YP_004270297.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: plm:Plim_2404 ROK family protein; PFAM: ROK; PRIAM: glucokinase; SPTR: ROK family protein; PFAM: ROK family YP_004270298.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: psl:Psta_3550 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family YP_004270299.1 COGs: COG0855 polyphosphate kinase; HAMAP: polyphosphate kinase; InterPro IPR003414; KEGG: psl:Psta_3549 polyphosphate kinase; PFAM: polyphosphate kinase; PRIAM: polyphosphate kinase; SPTR: polyphosphate kinase; TIGRFAM: polyphosphate kinase; PFAM: polyphosphate kinase; TIGRFAM: polyphosphate kinase 1 YP_004270300.1 KEGG: plm:Plim_0457 hypothetical protein; SPTR: uncharacterized protein YP_004270301.1 KEGG: plm:Plim_2676 hypothetical protein; SPTR: uncharacterized protein YP_004270302.1 COGs: COG4864 conserved hypothetical protein; HAMAP: UPF0365 protein; KEGG: plm:Plim_3788 seryl-tRNA synthetase (serine--tRNA ligase) (SerRS); SPTR: uncharacterized protein; PFAM: SigmaW regulon antibacterial YP_004270303.1 KEGG: plm:Plim_4212 hypothetical protein; SPTR: uncharacterized protein YP_004270304.1 KEGG: plm:Plim_4211 hypothetical protein; SPTR: uncharacterized protein YP_004270305.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: plm:Plim_2826 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004270306.1 KEGG: plm:Plim_3643 hypothetical protein; SPTR: uncharacterized protein YP_004270307.1 InterPro IPR013216; KEGG: plm:Plim_1452 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: uncharacterized protein; PFAM: methyltransferase domain YP_004270308.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: rba:RB11069 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Na(+)/H(+) exchanger ycgO; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain; TC 2.A.36 YP_004270309.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB5417 N-acetylgalactosamine-4-sulfatase precursor; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine-4-sulfatase; PFAM: Sulfatase YP_004270310.1 KEGG: plm:Plim_0301 hypothetical protein; SPTR: uncharacterized protein YP_004270311.1 KEGG: plm:Plim_0300 hypothetical protein; SPTR: uncharacterized protein YP_004270312.1 COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765: IPR003593; KEGG: plm:Plim_2553 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004270313.1 KEGG: plm:Plim_1372 hypothetical protein; SPTR: transglycosylase YP_004270314.1 InterPro IPR006143: IPR000089; KEGG: plm:Plim_2177 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; Biotin/lipoyl attachment; SPTR: Multidrug efflux RND membrane fusion protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter MFP subunit YP_004270315.1 KEGG: plm:Plim_4227 heat domain containing protein; SPTR: uncharacterized protein YP_004270316.1 COGs: COG2833 conserved hypothetical protein; InterPro IPR007402; KEGG: plm:Plim_1412 protein of unknown function DUF455; PFAM: protein of unknown function DUF455; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF455) YP_004270317.1 KEGG: rba:RB11461 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1569) YP_004270318.1 InterPro IPR013222; KEGG: plm:Plim_2846 glycosyl hydrolase family 98 carbohydrate binding module; PFAM: glycosyl hydrolase family 98, carbohydrate-binding module; SMART: glycosyl hydrolase family 98, carbohydrate-binding module; SPTR: glycosyl hydrolase family 98 carbohydrate binding module; PFAM: NPCBM/NEW2 domain; peptidase family YP_004270319.1 KEGG: mca:MCA2173 hypothetical protein; SPTR: uncharacterized protein YP_004270320.1 InterPro IPR011447; KEGG: psl:Psta_2830 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270321.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: plm:Plim_0287 protein of unknown function DUF1592; PFAM: protein of unknown function DUF1592; protein of unknown function DUF1587; protein of unknown function DUF1595; hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); protein of unknown function (DUF1595); Planctomycete cytochrome C; protein of unknown function (DUF1585) YP_004270322.1 KEGG: mac:MA0515 hypothetical protein; SPTR: uncharacterized protein YP_004270323.1 InterPro IPR019734: IPR001440; KEGG: dal:Dalk_1881 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Probable O-linked GlcNAc transferase- TPR-containing transmembrane protein; PFAM: Tetratricopeptide repeat YP_004270324.1 KEGG: mca:MCA2171 hypothetical protein; SPTR: uncharacterized protein YP_004270325.1 COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: rba:RB4658 inosine monophosphate dehydrogenase-like protein; PFAM: cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core; SPTR: uncharacterized protein; PFAM: CBS domain YP_004270326.1 KEGG: plm:Plim_3004 iron-sulfur cluster binding protein; SPTR: Iron-sulfur cluster binding protein; PFAM: Uncharacterized conserved protein (DUF2088) YP_004270327.1 COGs: COG0486 GTPase; InterPro IPR005225: IPR002917; KEGG: plm:Plim_1990 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase; TIGRFAM: Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain YP_004270328.1 COGs: COG0458 carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR006275: IPR005481: IPR005479: IPR005480: IPR 011607; KEGG: plm:Plim_0334 carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl phosphate synthetase, large subunit, ATP-binding; carbamoyl phosphate synthase, large subunit, N-terminal; carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; PRIAM: carbamoyl-phosphate synthase (ammonia); SPTR: carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain; TIGRFAM: carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; carbamoyl-phosphate synthetase large chain, oligomerisation domain; carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004270329.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683; KEGG: rba:RB3070 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: uncharacterized protein; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270331.1 COGs: COG2107 periplasmic solute-binding protein; KEGG: plm:Plim_1988 protein of unknown function DUF191; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178) YP_004270332.1 COGs: COG0029 aspartate oxidase; InterPro IPR005288: IPR003953: IPR004112; KEGG: plm:Plim_1270 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004270333.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rba:RB7081 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: oxidoreductase, short chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_004270334.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: psl:Psta_4268 chemotaxis protein CheX; SPTR: chemotaxis protein CheX YP_004270335.1 COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099: IPR005031: IPR001509: IPR013549; KEGG: psl:Psta_1631 hypothetical protein; PFAM: Domain of unknown function DUF1731, C-terminal; Streptomyces cyclase/dehydrase; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; polyketide cyclase / dehydrase and lipid transport; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777 YP_004270336.1 COGs: COG2755 lysophospholipase L1 and related esterase; InterPro IPR006311: IPR001087; KEGG: cpi:Cpin_3980 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/acylhydrolase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270337.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: plm:Plim_1551 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase YP_004270338.1 KEGG: plm:Plim_1550 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: anti-anti-sigma factor YP_004270339.1 COGs: COG0605 superoxide dismutase; InterPro IPR006311: IPR019831: IPR019832; KEGG: gym:GYMC10_0849 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_004270340.1 COGs: COG0525 valyl-tRNA synthetase; HAMAP: valyl-tRNA synthetase; InterPro IPR002303: IPR002300: IPR013155: IPR019499; KEGG: plm:Plim_2069 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase., Leucine--tRNA ligase; SPTR: valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004270341.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005675: IPR000891: IPR013709; KEGG: plm:Plim_2070 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; pyruvate carboxyltransferase; PRIAM: (R)-citramalate synthase; SPTR: 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase related; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein YP_004270342.1 KEGG: plm:Plim_2204 hypothetical protein; SPTR: uncharacterized protein YP_004270343.1 COGs: COG3225 ABC-type uncharacterized transporter involved in gliding motility auxiliary component; InterPro IPR019196; KEGG: plm:Plim_2203 ABC-type uncharacterized transporter involved in gliding motility, auxiliary component-like protein; PFAM: ABC-type uncharacterised transporter; SPTR: Probable permease of ABC transporter; PFAM: ABC-type uncharacterized transporter YP_004270344.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003593: IPR003439; KEGG: plm:Plim_2202 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter protein; PFAM: ABC transporter YP_004270345.1 KEGG: mxa:MXAN_2741 hypothetical protein; SPTR: Conserved domain protein YP_004270346.1 InterPro IPR003088; KEGG: plm:Plim_2959 cytochrome C class I; PFAM: cytochrome C, class I; SPTR: Probable PbrT protein-possibly cytochrome c; PFAM: cytochrome C YP_004270347.1 COGs: COG0044 dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722: IPR006680; KEGG: plm:Plim_2269 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase YP_004270348.1 COGs: COG0540 aspartate carbamoyltransferase catalytic chain; HAMAP: aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082: IPR006132: IPR006131; KEGG: plm:Plim_2268 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: aspartate carbamoyltransferase; SPTR: aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase, eukaryotic; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004270349.1 KEGG: rxy:Rxyl_2865 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: transmembrane protein (PGPGW) YP_004270350.1 COGs: COG1278 Cold shock protein; InterPro IPR011129: IPR002059; KEGG: rba:RB4681 cold shock protein ScoF; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Probable cold shock protein scoF; PFAM: 'Cold-shock' DNA-binding domain YP_004270351.1 COGs: COG2501 conserved hypothetical protein; InterPro IPR002942; KEGG: gvi:gsl0225 hypothetical protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: Choline sulfatase; PFAM: S4 domain YP_004270352.1 COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: mxa:MXAN_5960 fatty acid desaturase family protein; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase; PFAM: Fatty acid desaturase YP_004270353.1 InterPro IPR001242; KEGG: psl:Psta_0195 hypothetical protein; PFAM: Condensation domain; SPTR: uncharacterized protein; PFAM: Condensation domain YP_004270354.1 COGs: COG0400 esterase; InterPro IPR003140; KEGG: hoh:Hoch_5170 phospholipase/carboxylesterase; PFAM: phospholipase/carboxylesterase; SPTR: carboxylesterase; PFAM: phospholipase/carboxylesterase YP_004270355.1 COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: plm:Plim_1110 ABC transporter; PFAM: ABC-1; SPTR: Ubiquinone biosynthesis protein AarF, ; PFAM: ABC1 family YP_004270356.1 COGs: COG0196 FAD synthase; InterPro IPR015864: IPR015865: IPR002606; KEGG: plm:Plim_0714 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; PRIAM: FAD synthetase., riboflavin kinase; SPTR: riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin kinase/FAD synthetase; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004270357.1 InterPro IPR003675; KEGG: plm:Plim_3105 abortive infection protein; PFAM: hypothetical protein; SPTR: metal-dependent membrane protease; PFAM: CAAX amino terminal protease family YP_004270358.1 COGs: COG3568 metal-dependent hydrolase; InterPro IPR005135; KEGG: plm:Plim_3253 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase family YP_004270359.1 COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650; KEGG: plm:Plim_1772 sulfate adenylyltransferase; PFAM: Sulphate adenylyltransferase; PRIAM: sulfate adenylyltransferase; SPTR: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase YP_004270360.1 COGs: COG2055 malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: psl:Psta_2957 malate/L-lactate dehydrogenase; PFAM: malate/L-lactate dehydrogenase; PRIAM: malate dehydrogenase; SPTR: malate/L-lactate dehydrogenase; PFAM: malate/L-lactate dehydrogenase YP_004270361.1 InterPro IPR005181; KEGG: rba:RB5007 acetyl xylan esterase AxeA; PFAM: protein of unknown function DUF303, acetylesterase SPTR: Probable acetyl xylan esterase AxeA; PFAM: Domain of unknown function (DUF303) YP_004270362.1 KEGG: plm:Plim_1254 hypothetical protein; SPTR: uncharacterized protein; PFAM: Zinc dependent phospholipase C YP_004270363.1 KEGG: plm:Plim_1540 hypothetical protein; SPTR: uncharacterized protein YP_004270364.1 COGs: COG0450 peroxiredoxin; InterPro IPR000866: IPR019479; KEGG: plm:Plim_0808 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; peroxiredoxin, C-terminal; PRIAM: peroxiredoxin; SPTR: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004270365.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: dbr:Deba_1921 patatin; PFAM: patatin; SPTR: patatin; PFAM: patatin-like phospholipase YP_004270366.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_6052 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004270367.1 KEGG: plm:Plim_0766 hypothetical protein; SPTR: uncharacterized protein YP_004270368.1 COGs: COG2037 Formylmethanofuran:tetrahydromethanopterin formyltransferase; InterPro IPR002770: IPR014053; KEGG: plm:Plim_0767 formylmethanofuran/tetrahydromethanopterin N-formyltransferase; PFAM: Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); PRIAM: Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; SPTR: Tetrahydromethanopterin formyltransferase; TIGRFAM: Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr), subgroup; PFAM: FTR, proximal lobe; lobe; TIGRFAM: formylmethanofuran--tetrahydromethanopterin N-formyltransferase YP_004270369.1 COGs: COG4566 Response regulator; InterPro IPR001789: IPR000792; KEGG: vap:Vapar_2160 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SPTR: Two component LuxR family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004270370.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: hmo:HM1_2743 endoribonuclease L-psp; PFAM: endoribonuclease L-PSP; SPTR: uncharacterized protein; PFAM: endoribonuclease L-PSP YP_004270371.1 KEGG: psl:Psta_0797 FOG: WD40 repeat-like protein; SPTR: Probable polyvinylalcohol dehydrogenase YP_004270372.1 COGs: COG0557 Exoribonuclease R; InterPro IPR013223: IPR001900: IPR003029: IPR011805: IPR 004476; KEGG: plm:Plim_2449 ribonuclease R; PFAM: ribonuclease II/R; ribonuclease B, N-terminal OB domain; ribosomal protein S1, RNA binding domain; PRIAM: Exoribonuclease II; SPTR: ribonuclease R; TIGRFAM: ribonuclease R, bacterial; ribonuclease II/ribonuclease R, bacteria; PFAM: RNB domain; ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004270373.1 COGs: COG3481 HD-superfamily hydrolase; InterPro IPR003607: IPR004365: IPR006674; KEGG: plm:Plim_2466 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: CMP-binding protein; PFAM: HD domain; OB-fold nucleic acid binding domain YP_004270374.1 COGs: COG0442 prolyl-tRNA synthetase; HAMAP: prolyl-tRNA synthetase; InterPro IPR002314: IPR007214: IPR004154: IPR004500; KEGG: plm:Plim_2498 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; anticodon-binding; SPTR: prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase, class IIa, bacterial; PFAM: YbaK / prolyl-tRNA synthetases associated domain; anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_004270375.1 KEGG: gbm:Gbem_2317 sporulation domain protein; SPTR: XNopp180 protein YP_004270376.1 InterPro IPR012307; KEGG: plm:Plim_1610 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004270377.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: fbc:FB2170_14628 conserved hypothetical protein BH0710; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: uncharacterized protein; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_004270378.1 COGs: COG0782 transcription elongation factor; HAMAP: transcription elongation factor greA; InterPro IPR001437: IPR006359; KEGG: plm:Plim_2487 transcription elongation factor GreA; PFAM: transcription elongation factor, GreA/GreB domain, prokaryotic; SPTR: transcription elongation factor; TIGRFAM: Prokaryotic transcription elongation factor GreA; PFAM: domain; transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004270379.1 KEGG: plm:Plim_1846 hypothetical protein; SPTR: uncharacterized protein YP_004270380.1 COGs: COG3829 transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR000253: IPR003018: IPR003593: IPR002078: IPR 002197; KEGG: plm:Plim_1847 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Forkhead-associated; GAF; Helix-turn-helix, Fis-type; SMART: Forkhead-associated; GAF; ATPase, AAA+ type, core; SPTR: Sigma-54 factor interaction domain-containing protein; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; FHA domain YP_004270381.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: mav:MAV_0092 Crp/Fnr family transcriptional regulator protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY; PFAM: Cyclic nucleotide-binding domain YP_004270382.1 COGs: COG0334 glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: mxa:MXAN_5873 glutamate dehydrogenase; PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: glutamate dehydrogenase (NAD(P)(+)); SPTR: glutamate dehydrogenase; PFAM: glutamate/Leucine/phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004270383.1 KEGG: plm:Plim_1845 hypothetical protein; SPTR: uncharacterized protein YP_004270384.1 InterPro IPR019935; KEGG: rba:RB210 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03546; PFAM: Uncharacterized protein conserved in bacteria (DUF2062); TIGRFAM: conserved hypothetical protein TIGR03546 YP_004270385.1 InterPro IPR019934; KEGG: rba:RB207 endosomal protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03545; TIGRFAM: conserved hypothetical protein TIGR03545 YP_004270386.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509: IPR005888; KEGG: drt:Dret_0307 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004270387.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: plm:Plim_3736 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004270388.1 KEGG: swi:Swit_0769 short chain dehydrogenase; SPTR: peptide chain release factor 2; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004270389.1 InterPro IPR010496; KEGG: plm:Plim_2356 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004270390.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR002933: IPR011650; KEGG: psl:Psta_4711 peptidase dimerization domain protein; PFAM: peptidase M20, dimerisation; peptidase M20; SPTR: peptidase, M20A family protein; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: peptidase T-like protein YP_004270391.1 KEGG: plm:Plim_2516 hypothetical protein; SPTR: uncharacterized protein YP_004270392.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR006009: IPR004276: IPR007235; KEGG: plm:Plim_0205 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28, C-terminal; glycosyl transferase, family 28; PRIAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase family 28 C-terminal domain; glycosyltransferase family 28 N-terminal domain YP_004270393.1 COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002305: IPR002307; KEGG: plm:Plim_2197 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004270394.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: plm:Plim_2198 oxidoreductase; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: uncharacterized protein; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_004270395.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: plm:Plim_1862 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Probable lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004270396.1 COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: psl:Psta_3250 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) oxidoreductase; PFAM: Rieske [2Fe-2S] domain YP_004270397.1 KEGG: plm:Plim_1860 hypothetical protein; SPTR: uncharacterized protein YP_004270398.1 InterPro IPR019734; KEGG: plm:Plim_1858 tetratricopeptide TPR_2 repeat protein; SPTR: TPR repeat; PFAM: Tetratricopeptide repeat YP_004270399.1 COGs: COG0009 translation factor (SUA5); InterPro IPR006070: IPR005145: IPR004388; KEGG: msv:Mesil_0175 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; SPTR: Sua5 related protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004270400.1 COGs: COG0287 prephenate dehydrogenase; InterPro IPR003099; KEGG: psl:Psta_1058 prephenate dehydrogenase; PFAM: prephenate dehydrogenase; PRIAM: prephenate dehydrogenase; SPTR: Cyclohexadienyl dehydrogenase; PFAM: prephenate dehydrogenase YP_004270401.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR003593: IPR004176: IPR003959: IPR001943: IPR 013093: IPR019489; KEGG: plm:Plim_0603 ATPase AAA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: negative regulator of genetic competence ClpC/MecB; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif YP_004270402.1 KEGG: gau:GAU_1755 folylpolyglutamate synthase; SPTR: Folylpolyglutamate synthase YP_004270403.1 KEGG: psl:Psta_0625 hypothetical protein; SPTR: uncharacterized protein YP_004270404.1 KEGG: plm:Plim_1732 hypothetical protein; SPTR: uncharacterized protein YP_004270405.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease ATP-binding subunit ClpX; InterPro IPR004487: IPR003593: IPR010603: IPR013093: IPR 019489; KEGG: plm:Plim_1734 ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004270406.1 InterPro IPR003675; KEGG: plm:Plim_2196 abortive infection protein; PFAM: hypothetical protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family YP_004270407.1 KEGG: psl:Psta_0405 hypothetical protein; SPTR: uncharacterized protein YP_004270408.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_3104 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Mitogen-activated protein kinase kinase kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Tyrosine protein kinase:serine/threonine protein kinase:PASTA; PFAM: protein kinase domain YP_004270409.1 KEGG: plm:Plim_3406 hypothetical protein; SPTR: uncharacterized protein YP_004270410.1 InterPro IPR001258: IPR006311; KEGG: psl:Psta_2952 hypothetical protein; PFAM: NHL repeat; SPTR: peptidylglycine monooxygenase-like protien; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270411.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; PFAM: pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase afsK YP_004270412.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004270413.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004270414.1 KEGG: rba:RB7406 signal peptide; SPTR: uncharacterized protein YP_004270415.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_3370 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase pknB; PFAM: protein kinase domain YP_004270416.1 COGs: COG1109 phosphomannomutase; InterPro IPR005844; KEGG: plm:Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; SPTR: phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004270417.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_2475 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004270418.1 COGs: COG0151 phosphoribosylamine-glycine ligase; HAMAP: phosphoribosylglycinamide synthetase; InterPro IPR000115: IPR020562: IPR020561: IPR020560; KEGG: plm:Plim_1777 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; PRIAM: phosphoribosylamine--glycine ligase; SPTR: phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylglycinamide synthetase; PFAM: phosphoribosylglycinamide synthetase, N domain; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_004270419.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR003593: IPR002078: IPR002197; KEGG: psl:Psta_0385 sigma54 specific transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: acetoacetate metabolism regulatory protein atoC; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004270420.1 COGs: COG0424 nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: plm:Plim_1954 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein Plim_1954; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004270421.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: psl:Psta_3767 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V YP_004270422.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: plm:Plim_3130 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004270423.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: plm:Plim_1457 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Probable sigma factor SigH; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004270424.1 KEGG: tcr:507237.10 trans-sialidase; SPTR: trans-sialidase YP_004270425.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593: IPR001482; KEGG: psl:Psta_2137 type II secretion system protein E; PFAM: type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: secretion pathway ATPase; PFAM: type II/IV secretion system protein YP_004270426.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: sml:Smlt2740 general secretion pathway protein F; PFAM: type II secretion system F domain; SPTR: general secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain YP_004270427.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: mmr:Mmar10_0383 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type IV pilus assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain YP_004270428.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: rba:RB8711 type IV pilus assembly protein TapC; PFAM: type II secretion system F domain; SPTR: fimbrial assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain YP_004270429.1 InterPro IPR012902; KEGG: afn:Acfer_1293 Tfp pilus assembly protein PilE-like protein; SPTR: type II secretory pathway, pseudopilin PulG; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270430.1 KEGG: psl:Psta_2142 hypothetical protein; SPTR: uncharacterized protein YP_004270431.1 KEGG: rpi:Rpic_0668 transmembrane protein; SPTR: uncharacterized protein YP_004270432.1 InterPro IPR012902; KEGG: rba:RB8718 signal peptide; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270433.1 KEGG: plm:Plim_3010 hypothetical protein; SPTR: uncharacterized protein YP_004270435.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR000253: IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_3897 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; Forkhead-associated; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; Forkhead-associated; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain; FHA domain YP_004270436.1 KEGG: rba:RB8677 hypothetical protein; SPTR: uncharacterized protein; PFAM: KaiC YP_004270437.1 COGs: COG2855 membrane protein; InterPro IPR018383; KEGG: rba:RB9488 hypothetical protein; PFAM: Uncharacterised protein family UPF0324, prokaryote; SPTR: uncharacterized protein; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_004270438.1 KEGG: rba:RB9491 signal peptide; SPTR: uncharacterized protein YP_004270439.1 COGs: COG3326 membrane protein; InterPro IPR010718; KEGG: aha:AHA_0601 integral membrane protein; PFAM: protein of unknown function DUF1294; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1294) YP_004270440.1 COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR002125: IPR002734: IPR004794: IPR011549; KEGG: psl:Psta_1878 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase, C-terminal; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_004270441.1 InterPro IPR004027; KEGG: plm:Plim_4202 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: uncharacterized protein; PFAM: SEC-C motif YP_004270442.1 COGs: COG0178 excinuclease ATPase; InterPro IPR003593: IPR003439; KEGG: nde:NIDE0568 excinuclease ABC subunit A; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: excinuclease ABC subunit A; PFAM: ABC transporter; TIGRFAM: excinuclease ABC subunit A YP_004270443.1 COGs: COG0404 glycine cleavage system protein T (aminomethyltransferase); InterPro IPR006222: IPR017703; KEGG: psl:Psta_1957 folate-binding protein YgfZ; PFAM: glycine cleavage T-protein, N-terminal; SPTR: glycine cleavage T protein, aminomethyl transferase; TIGRFAM: Folate-binding, YgfZ; PFAM: Aminomethyltransferase folate-binding domain; glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ YP_004270444.1 COGs: COG3030 protein affecting phage T7 exclusion by the F plasmid; InterPro IPR007313; KEGG: dde:Dde_2422 FxsA protein; PFAM: FxsA cytoplasmic membrane protein; SPTR: Cytoplasmic membrane protein FsxA; PFAM: FxsA cytoplasmic membrane protein YP_004270445.1 COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR007085; KEGG: rba:RB8747 flavoprotein; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; PRIAM: phosphopantothenate--cysteine ligase; SPTR: Flavoprotein; PFAM: DNA / pantothenate metabolism flavoprotein YP_004270446.1 COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: plm:Plim_3372 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: serine/threonine protein phosphatase; TIGRFAM: phosphodiesterase MJ0936; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_004270447.1 KEGG: plm:Plim_1740 hypothetical protein; SPTR: uncharacterized protein YP_004270448.1 KEGG: plm:Plim_0643 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3299) YP_004270449.1 KEGG: plm:Plim_0644 hypothetical protein; SPTR: uncharacterized protein YP_004270450.1 COGs: COG2518 protein-L-isoaspartate carboxylmethyltransferase; HAMAP: protein-L-isoaspartate O-methyltransferase; InterPro IPR000682; KEGG: plm:Plim_0186 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004270451.1 KEGG: rba:RB10396 membrane associated protein; SPTR: uncharacterized protein YP_004270452.1 COGs: COG1229 Formylmethanofuran dehydrogenase subunit A; InterPro IPR013108: IPR012027; KEGG: plm:Plim_1687 formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; SPTR: DNA/RNA non-specific endonuclease; TIGRFAM: Formylmethanofuran dehydrogenase, subunit A; PFAM: Amidohydrolase family; TIGRFAM: formylmethanofuran dehydrogenase subunit A YP_004270453.1 KEGG: sab:SAB1255 diaminopimelate decarboxylase; SPTR: uncharacterized protein YP_004270454.1 COGs: COG4147 symporter; InterPro IPR001734; KEGG: rba:RB11856 symporter YwcA; PFAM: Sodium/solute symporter; SPTR: symporter ywcA; PFAM: Sodium:solute symporter family YP_004270455.1 KEGG: rba:RB11857 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function, DUF485 YP_004270456.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: plm:Plim_0814 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004270457.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031; KEGG: plm:Plim_1694 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-(acyl carrier protein) synthase; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain YP_004270458.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583: IPR001962: IPR006426; KEGG: scl:sce2064 asparagine synthetase; PFAM: Asparagine synthase; glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthetase; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004270459.1 COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: pat:Patl_2877 aldehyde reductase; PFAM: Aldo/keto reductase; PRIAM: aldehyde reductase; SPTR: aldehyde reductase; PFAM: Aldo/keto reductase family YP_004270460.1 COGs: COG2062 phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: psl:Psta_3548 phosphohistidine phosphatase, SixA; PFAM: histidine phosphatase superfamily, clade-1; SPTR: phosphohistidine phosphatase, SixA; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA YP_004270461.1 COGs: COG1587 uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: plm:Plim_2288 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: uroporphyrinogen III synthase HEM4; PFAM: uroporphyrinogen-III synthase HemD YP_004270462.1 InterPro IPR011682; KEGG: psl:Psta_3607 hypothetical protein; PFAM: glycosyl hydrolases 38, C-terminal; SPTR: uncharacterized protein; PFAM: glycosyl hydrolases family 38 C-terminal domain YP_004270463.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136: IPR000623: IPR011994; KEGG: plm:Plim_0331 cytidylate kinase; PFAM: Cytidylate kinase domain; shikimate kinase; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase; shikimate kinase; TIGRFAM: cytidylate kinase YP_004270464.1 COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: bpo:BP951000_0507 transporter; PFAM: Bile acid:sodium symporter; SPTR: transporter; sodium/bile acid transporter family protein; PFAM: Sodium Bile acid symporter family YP_004270465.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: plm:Plim_2149 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004270466.1 COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382: IPR004507; KEGG: plm:Plim_2148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_004270467.1 KEGG: plm:Plim_1146 hypothetical protein; SPTR: uncharacterized protein YP_004270468.1 COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: plm:Plim_2219 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG1259 YP_004270469.1 KEGG: psl:Psta_2148 hypothetical protein; SPTR: uncharacterized protein; PFAM: Orthopoxvirus protein of unknown function (DUF830) YP_004270470.1 KEGG: cbl:CLK_2143 hypothetical protein; SPTR: uncharacterized protein YP_004270471.1 KEGG: plm:Plim_0576 protein of unknown function DUF493; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF493) YP_004270472.1 KEGG: scl:sce8004 hypothetical protein; SPTR: uncharacterized protein YP_004270473.1 COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: psl:Psta_0806 thiamine pyrophosphate protein domain protein TPP-binding protein; PFAM: thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004270474.1 COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR019752: IPR002880; KEGG: rba:RB6935 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit alpha; PFAM: domain; pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit alpha YP_004270475.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR013099: IPR003148: IPR006037; KEGG: mar:MAE_30200 potassium channel protein; PFAM: Regulator of K+ conductance, N-terminal; ion transport 2; Regulator of K+ conductance, C-terminal; SPTR: Similar to tr|Q31RI4|Q31RI4_SYNP7 Response regulator receiver domain protein; PFAM: TrkA-N domain; ion channel YP_004270476.1 COGs: COG0045 Succinyl-CoA synthetase subunit beta; HAMAP: Succinyl-CoA synthetase subunit beta; InterPro IPR005809: IPR013650: IPR005811; KEGG: plm:Plim_2406 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, subunit beta YP_004270477.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_1456 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Sulfatase; PFAM: Sulfatase YP_004270478.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781: IPR005811: IPR005810; KEGG: plm:Plim_2405 succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; PRIAM: succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, subunit alpha; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, subunit alpha YP_004270479.1 KEGG: ctt:CtCNB1_2375 hypothetical protein; SPTR: uncharacterized protein YP_004270480.1 InterPro IPR011138; KEGG: plm:Plim_2451 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase, cytochrome b558 subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004270481.1 COGs: COG1053 succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953: IPR004112: IPR011280; KEGG: chu:CHU_2473 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: succinate dehydrogenase; SPTR: succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup YP_004270482.1 COGs: COG0479 succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489; KEGG: lbf:LBF_1647 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; SPTR: succinate dehydrogenase iron-sulfur subunit SdhB; TIGRFAM: succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004270483.1 COGs: COG0404 glycine cleavage system protein T (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006222: IPR013977: IPR006223; KEGG: psl:Psta_4673 glycine cleavage system T protein; PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: glycine cleavage system protein T; PFAM: Aminomethyltransferase folate-binding domain; glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system protein T YP_004270484.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psl:Psta_4362 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004270485.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_2175 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: [Myosin light-chain] kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable protein kinase yloP; PFAM: protein kinase domain YP_004270486.1 COGs: COG0825 acetyl-CoA carboxylase subunit alpha; HAMAP: acetyl-CoA carboxylase, subunit alpha; InterPro IPR001095: IPR020582; KEGG: plm:Plim_2174 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, subunit alpha, conserved region; PRIAM: acetyl-CoA carboxylase; SPTR: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, alpha subunit; PFAM: acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha YP_004270487.1 KEGG: dgr:Dgri_GH10914 GH10914 gene product from transcript GH10914-RA YP_004270488.1 KEGG: plm:Plim_3371 hypothetical protein; SPTR: uncharacterized protein YP_004270489.1 KEGG: tgo:TGME49_119590 hypothetical protein; SPTR: uncharacterized protein YP_004270490.1 KEGG: plm:Plim_1763 hypothetical protein; SPTR: uncharacterized protein YP_004270491.1 COGs: COG0002 acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000706: IPR000534: IPR012280; KEGG: plm:Plim_2484 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase, NAD-binding; semialdehyde dehydrogenase, dimerisation domain; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase, dimerisation domain; semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004270492.1 KEGG: plm:Plim_0832 hypothetical protein; SPTR: uncharacterized protein YP_004270493.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: plm:Plim_1607 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V YP_004270494.1 InterPro IPR006143; KEGG: plm:Plim_2177 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter MFP subunit YP_004270495.1 COGs: COG1286 membrane protein required for colicin V production; InterPro IPR003825; KEGG: psl:Psta_4225 colicin V production protein; PFAM: colicin V production protein; SPTR: uncharacterized protein; PFAM: colicin V production protein YP_004270496.1 COGs: COG2957 peptidylarginine deiminase; InterPro IPR007466; KEGG: psl:Psta_2477 agmatine deiminase; PFAM: peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: uncharacterized protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_004270497.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: psl:Psta_2478 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase YP_004270498.1 KEGG: plm:Plim_2014 hypothetical protein; SPTR: uncharacterized protein YP_004270499.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR001254; KEGG: dak:DaAHT2_0880 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: peptidase S1 and S6 chymotrypsin/Hap; PFAM: Trypsin YP_004270500.1 InterPro IPR002645; KEGG: plm:Plim_2399 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004270501.1 KEGG: plm:Plim_2276 hypothetical protein; SPTR: uncharacterized protein YP_004270502.1 COGs: COG0112 glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: plm:Plim_2187 glycine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase; PRIAM: glycine hydroxymethyltransferase; SPTR: serine hydroxymethyltransferase (serine methylase SHMT); PFAM: serine hydroxymethyltransferase YP_004270503.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterPro IPR019734: IPR001357: IPR000551: IPR001440; KEGG: plm:Plim_2188 tetratricopeptide TPR_2 repeat protein; PFAM: BRCT; HTH transcriptional regulator, MerR; Tetratricopeptide TPR-1; SPTR: Probable O-linked GlcNAc transferase; PFAM: Tetratricopeptide repeat; BRCA1 C Terminus (BRCT) domain YP_004270504.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: rba:RB2162 serine/threonine-protein kinase PknH; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase pknH; PFAM: protein kinase domain YP_004270505.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB8597 sulfatase AtsG; PFAM: Sulfatase; SPTR: Probable sulfatase atsG; PFAM: Sulfatase YP_004270506.1 KEGG: plm:Plim_2754 hypothetical protein; SPTR: uncharacterized protein YP_004270507.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753: IPR006176: IPR006108; KEGG: aeh:Mlg_2111 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA epimerase; SPTR: Fatty acid oxidation complex subunit alpha; PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004270508.1 COGs: COG0183 acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155; KEGG: pin:Ping_2605 acetyl-CoA acetyltransferases; PFAM: thiolase, N-terminal; thiolase, C-terminal; PRIAM: acetyl-CoA C-acyltransferase; SPTR: 3-ketoacyl-CoA thiolase; TIGRFAM: thiolase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004270509.1 COGs: COG1482 phosphomannose isomerase; InterPro IPR001250; KEGG: psl:Psta_4651 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I; PRIAM: mannose-6-phosphate isomerase; SPTR: mannose-6-phosphate isomerase, class I; PFAM: phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_004270510.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201: IPR011910; KEGG: plm:Plim_1964 glycosyl transferase family 9; PFAM: glycosyl transferase, family 9; SPTR: Heptosyltransferase family protein; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004270511.1 COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase; InterPro IPR003607: IPR013546: IPR006674: IPR002912; KEGG: plm:Plim_2275 protein-P-II uridylyltransferase; PFAM: PII-uridylyltransferase/glutamine-synthetase adenylyltransferase; metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; PRIAM: [protein-PII] uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: Uridylyltransferase/uridylyl-removing enzyme glnD; PFAM: GlnD PII-uridylyltransferase; HD domain; ACT domain; nucleotidyltransferase domain; TIGRFAM: [protein-PII] uridylyltransferase YP_004270512.1 COGs: COG0347 nitrogen regulatory protein PII; InterPro IPR002187; KEGG: plm:Plim_2274 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein PII; SPTR: nitrogen regulatory protein P-II (GlnB, GlnK); PFAM: nitrogen regulatory protein P-II YP_004270513.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: plm:Plim_2272 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter Family; TIGRFAM: ammonium transporter; TC 1.A.11 YP_004270514.1 InterPro IPR010496; KEGG: dfe:Dfer_4583 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Hypothetical oxidoreductase; PFAM: Domain of Unknown Function (DUF1080) YP_004270515.1 KEGG: gpb:HDN1F_25360 hypothetical protein; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF695) YP_004270516.1 InterPro IPR010719; KEGG: aeh:Mlg_1515 rRNA methylase; PFAM: rRNA methylase; SPTR: rRNA methylase superfamily protein; PFAM: rRNA methylase YP_004270517.1 COGs: COG0665 glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: uncharacterized protein; PFAM: FAD dependent oxidoreductase YP_004270518.1 InterPro IPR019546: IPR010869: IPR006311; KEGG: psl:Psta_0347 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270519.1 InterPro IPR011444; KEGG: psl:Psta_0348 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270520.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: gga:428020 tripeptidyl peptidase II; PFAM: peptidase S8/S53, subtilisin/kexin/sedolisin; PRIAM: Tripeptidyl-peptidase II; SPTR: Pyrolysin; PFAM: Tripeptidyl peptidase II; Subtilase family YP_004270521.1 COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: ctc:CTC00678 peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: uncharacterized protein; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004270522.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: plm:Plim_0369 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; PRIAM: phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin) YP_004270523.1 InterPro IPR003689; KEGG: rba:RB8833 hypothetical protein; PFAM: Zinc/iron permease; SPTR: uncharacterized protein; PFAM: ZIP Zinc transporter YP_004270524.1 KEGG: plm:Plim_1553 hypothetical protein; SPTR: uncharacterized protein YP_004270525.1 COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474: IPR020602; KEGG: rba:RB11853 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_004270526.1 KEGG: cbi:CLJ_B1664 queuosine biosynthesis protein QueD; SPTR: 6-pyruvoyl-tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase YP_004270527.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: vvi:100264044 hypothetical protein LOC100264044; PFAM: Amine oxidase; SPTR: uncharacterized protein; PFAM: Flavin containing amine oxidoreductase YP_004270528.1 KEGG: spo:SPAC343.06c phospholipid scramblase; SPTR: Hypothetical membrane protein YP_004270529.1 COGs: COG1309 transcriptional regulator; InterPro IPR001647: IPR015292; KEGG: mca:MCA1807 TetR family transcriptional regulator; PFAM: transcription regulator YbiH, C-terminal; transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Probable transcriptional regulator; PFAM: Domain of unknown function (DUF1956); Bacterial regulatory proteins, tetR family YP_004270530.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: psl:Psta_1054 secretion protein HlyD; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004270531.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: psl:Psta_1055 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family YP_004270532.1 KEGG: hoh:Hoch_2990 hypothetical protein; SPTR: uncharacterized protein YP_004270533.1 COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051: IPR004175; KEGG: rce:RC1_3091 2'-5' RNA ligase, PFAM: phosphoesterase, HXTX; SPTR: 2'-5' RNA ligase, ; TIGRFAM: 2',5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_004270534.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR013099: IPR003148: IPR006037; KEGG: tye:THEYE_A0825 potassium uptake protein, TrkA family; PFAM: Regulator of K+ conductance, N-terminal; ion transport 2; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N; PFAM: TrkA-N domain; ion channel; TrkA-C domain YP_004270535.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR000014: IPR001610: IPR003661: IPR003594: IPR 013656: IPR013767: IPR013655; KEGG: cyn:Cyan7425_3017 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; PAS fold; PAS fold-3; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270536.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: mau:Micau_5611 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004270537.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR001789: IPR003661: IPR003594; KEGG: hch:HCH_04933 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: sensory transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004270538.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB2732 heparan N-sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; PFAM: Sulfatase YP_004270539.1 KEGG: pca:Pcar_2591 hypothetical protein; SPTR: uncharacterized protein; PFAM: glycosyl transferase family 2 YP_004270540.1 COGs: COG0039 malate/lactate dehydrogenase; HAMAP: malate dehydrogenase; InterPro IPR001236: IPR010945; KEGG: plm:Plim_1133 malate dehydrogenase; PFAM: lactate/malate dehydrogenase; SPTR: malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD/NADP; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase YP_004270541.1 KEGG: plm:Plim_4052 hypothetical protein; SPTR: uncharacterized protein YP_004270542.1 InterPro IPR004360; KEGG: plm:Plim_1428 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004270543.1 COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR003607: IPR006674; KEGG: plm:Plim_0015 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: metal-dependent phosphohydrolase HD sub domain protein; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_004270544.1 COGs: COG4581 Superfamily II RNA helicase; InterPro IPR014001: IPR001650: IPR011545; KEGG: psl:Psta_1777 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004270545.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468: IPR017456: IPR000991; KEGG: plm:Plim_1716 CTP synthase; PFAM: CTP synthase, N-terminal; glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004270546.1 COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR004528: IPR003329; KEGG: plm:Plim_1717 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004270547.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR010496; KEGG: plm:Plim_0363 glucose sorbosone dehydrogenase; PFAM: protein of unknown function DUF1080; SPTR: protein up-regulated by thyroid hormone- PQQ-dependent glucose dehydrogenase; PFAM: glucose / Sorbosone dehydrogenase; Domain of Unknown Function (DUF1080) YP_004270548.1 COGs: COG3049 Penicillin V acylase and related amidase; InterPro IPR003199; KEGG: bba:Bd0665 choloylglycine hydrolase; PFAM: choloylglycine hydrolase; SPTR: choloylglycine hydrolase; PFAM: Linear amide C-N hydrolases, choloylglycine hydrolase family YP_004270549.1 COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: sbi:SORBI_03g030360 hypothetical protein; PFAM: transcriptional coactivator/pterin dehydratase; SPTR: Probable pterin-4-alpha-carbinolamine dehydratase; PFAM: Pterin 4 alpha carbinolamine dehydratase YP_004270550.1 InterPro IPR000253; KEGG: plm:Plim_3629 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004270551.1 KEGG: plm:Plim_3438 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; SPTR: dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family) YP_004270552.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031: IPR017568; KEGG: plm:Plim_3120 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-(acyl-carrier protein) synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004270553.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: plm:Plim_3121 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Probable hydroxymyristoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain YP_004270554.1 HAMAP: acyl carrier protein (ACP); InterPro IPR003231: IPR006163; KEGG: plm:Plim_3122 phosphopantetheine-binding protein; PFAM: phosphopantetheine-binding; SPTR: Probable acyl carrier protein; PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004270555.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_3123 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(acyl-carrier protein) reductase; PFAM: short chain dehydrogenase YP_004270556.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114; KEGG: plm:Plim_3124 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Probable hydroxymyristoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain YP_004270557.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: plm:Plim_0142 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: protein kinase, ; PFAM: Formylglycine-generating sulfatase enzyme YP_004270558.1 COGs: COG3694 ABC-type uncharacterized transporter permease; InterPro IPR010390; KEGG: plm:Plim_0739 protein of unknown function DUF990; PFAM: protein of unknown function DUF990; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF990) YP_004270559.1 COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728: IPR010918: IPR004733; KEGG: plm:Plim_0738 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_004270560.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142: IPR004635; KEGG: plm:Plim_2159 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: SppA; TIGRFAM: peptidase S49, SppA; PFAM: peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type YP_004270561.1 KEGG: ssa:SSA_1274 hypothetical protein; SPTR: SCP-like extracellular protein YP_004270563.1 KEGG: rpc:RPC_3214 hypothetical protein; SPTR: uncharacterized protein YP_004270564.1 KEGG: nve:NEMVE_v1g136045 hypothetical protein; SPTR: Aa2-066 YP_004270565.1 KEGG: nda:Ndas_0976 pseudouridine synthase; SPTR: Pseudouridine synthase YP_004270566.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: plm:Plim_0006 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dyhydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270567.1 InterPro IPR006553; KEGG: psl:Psta_2397 leucine-rich repeat cysteine-containing subtype; SMART: Leucine-rich repeat, cysteine-containing subtype; SPTR: Leucine-rich repeat domain protein YP_004270568.1 COGs: COG0659 sulfate permease and related transporter (MFS superfamily); InterPro IPR011547: IPR001765; KEGG: rba:RB11063 sulfate transporter; PFAM: carbonic anhydrase; Sulphate transporter; SPTR: Probable sulfate transporter; PFAM: sulfate transporter family; carbonic anhydrase YP_004270569.1 InterPro IPR002104; KEGG: tko:TK0777 integrase/recombinase; PFAM: Integrase, catalytic core, phage; SPTR: uncharacterized protein; PFAM: Phage integrase family YP_004270570.1 KEGG: hch:HCH_06454 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), subunit alpha; SPTR: type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), subunit alpha YP_004270571.1 KEGG: afm:AFUA_2G14080 chromosome segregation protein SudA; SPTR: chromosome segregation protein SudA YP_004270572.1 KEGG: gur:Gura_3746 prophage repressor; SPTR: transcriptional regulator, Cro/CI family YP_004270573.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004270574.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR003661: IPR003594: IPR001789: IPR 013767; KEGG: aav:Aave_2975 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: Response regulator receiver domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270575.1 InterPro IPR006860; KEGG: rba:RB908 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004270576.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR014284; KEGG: rba:RB5081 ECF-like sigma factor SigE; PFAM: RNA polymerase sigma-70 region 2; SPTR: Probable extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004270577.1 InterPro IPR012902; KEGG: plm:Plim_3656 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270578.1 KEGG: hsa:653061 similar to Golgin subfamily A member 8-like protein 1; SPTR: HSP70 YP_004270579.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270580.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270581.1 InterPro IPR005135; KEGG: svi:Svir_15310 endonuclease/exonuclease/phosphatase family protein; PFAM: endonuclease/exonuclease/phosphatase; SPTR: endonuclease/exonuclease/phosphatase family protein YP_004270582.1 InterPro IPR005135; KEGG: amr:AM1_G0049 hypothetical protein; PFAM: endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: endonuclease/exonuclease/phosphatase family YP_004270584.1 COGs: COG1446 asparaginase; InterPro IPR000246; KEGG: rba:RB7985 L-asparaginase; PFAM: peptidase T2, asparaginase 2; PRIAM: beta-aspartyl-peptidase; SPTR: L-asparaginase; PFAM: asparaginase YP_004270585.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: cyc:PCC7424_0318 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase YP_004270586.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bbt:BBta_3104 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase YP_004270587.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB9549 iduronate-sulfatase (partial) and sulfatase 1 precursor; PFAM: Sulfatase; PRIAM: Choline-sulfatase; SPTR: Iduronate sulfatase; PFAM: Sulfatase YP_004270588.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: plm:Plim_1879 sulfatase; PFAM: Sulfatase; SPTR: N-acetyl-galactosamine-6-sulfatase (GALNS); PFAM: Sulfatase YP_004270589.1 InterPro IPR010496; KEGG: psl:Psta_1172 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004270590.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: fbc:FB2170_10661 probable NADH-dependent dehydrogenase; PFAM: oxidoreductase, N-terminal; SPTR: GFO/IDH/MocA family secreted oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270591.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_1173 sulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004270592.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pdi:BDI_2321 arylsulfatase A; PFAM: Sulfatase; PRIAM: Steryl-sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004270593.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_6289 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004270594.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB1456 N-acetylgalactosamine-6-sulfate sulfatase; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: N-acetylgalactosamine-6-sulfate sulfatase; PFAM: Sulfatase YP_004270595.1 KEGG: psl:Psta_3600 hypothetical protein; SPTR: uncharacterized protein YP_004270596.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270597.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: rba:RB9561 extracytoplasmic function alternative sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004270598.1 InterPro IPR006558: IPR006860; KEGG: psl:Psta_1166 FecR protein; PFAM: FecR protein; SMART: LamG-like jellyroll fold; SPTR: uncharacterized protein; PFAM: FecR protein YP_004270599.1 KEGG: rba:RB4532 MchE protein; SPTR: MchE protein-like YP_004270600.1 COGs: COG3696 silver efflux pump; InterPro IPR001036: IPR004763; KEGG: plm:Plim_0669 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_004270601.1 KEGG: rba:RB1828 signal peptide; SPTR: uncharacterized protein YP_004270602.1 KEGG: rba:RB1827 hypothetical protein; SPTR: uncharacterized protein YP_004270603.1 InterPro IPR005181; KEGG: rba:RB7225 signal peptide; PFAM: protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF303) YP_004270604.1 KEGG: fbc:FB2170_11001 hypothetical protein; SPTR: uncharacterized protein; PFAM: NmrA-like family YP_004270605.1 InterPro IPR010869: IPR006311; KEGG: rba:RB4032 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270606.1 InterPro IPR011444; KEGG: rba:RB4233 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270607.1 InterPro IPR006860; KEGG: rba:RB4239 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004270608.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: plm:Plim_0524 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004270609.1 COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: aca:ACP_3441 arsenical resistance operon repressor; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: ArsR family transcriptional regulator protein; PFAM: Bacterial regulatory protein, arsR family YP_004270610.1 COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657: IPR004706; KEGG: rba:RB783 integral membrane efflux protein; PFAM: sodium symporter; SPTR: Probable integral membrane efflux protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenic resistance protein YP_004270611.1 COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: tra:Trad_2154 protein-tyrosine phosphatase, low molecular weight; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: protein-tyrosine phosphatase, low molecular weight; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin) YP_004270612.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: nfi:NFIA_099320 UbiE/COQ5 family methyltransferase, PFAM: methyltransferase type 11; SPTR: SAM-dependent methyltransferase UbiE/COQ5 family protein; PFAM: methyltransferase domain YP_004270613.1 InterPro IPR005079; KEGG: plm:Plim_0017 hypothetical protein; PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: uncharacterized protein; PFAM: acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_004270614.1 KEGG: psl:Psta_3013 hypothetical protein; SPTR: uncharacterized protein YP_004270615.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270616.1 KEGG: plm:Plim_1843 hypothetical protein; SPTR: uncharacterized protein YP_004270617.1 InterPro IPR013427; KEGG: plm:Plim_1723 heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: Haem-binding domain, PFAM: cytochrome C; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type YP_004270618.1 InterPro IPR010869; KEGG: rba:RB430 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270619.1 InterPro IPR011444; KEGG: psl:Psta_4557 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270620.1 InterPro IPR011447; KEGG: psl:Psta_3502 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270621.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: psl:Psta_3503 protein of unknown function DUF1592; PFAM: protein of unknown function DUF1588; hypothetical protein; protein of unknown function DUF1587; protein of unknown function DUF1595; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); protein of unknown function (DUF1595); Planctomycete cytochrome C; protein of unknown function (DUF1585) YP_004270622.1 KEGG: hoh:Hoch_4337 hypothetical protein; SPTR: Hypothetical membrane protein YP_004270623.1 InterPro IPR008391; KEGG: psl:Psta_2878 hypothetical protein; PFAM: acetyl xylan esterase; SPTR: uncharacterized protein; PFAM: acetyl xylan esterase (AXE1) YP_004270624.1 KEGG: rba:RB7871 signal peptide; SPTR: uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase YP_004270625.1 KEGG: tca:658190 similar to RasGEF domain family, member 1B isoform 2; SPTR: uncharacterized protein YP_004270627.1 KEGG: ecb:100061461 hypothetical LOC100061461; SPTR: PE-PGRS family protein YP_004270628.1 KEGG: plm:Plim_1326 nucleotidyltransferase/DNA polymerase; SPTR: uncharacterized protein; PFAM: impB/mucB/samB family YP_004270629.1 COGs: COG0587 DNA polymerase III subunit alpha; HAMAP: Error-prone DNA polymerase; InterPro IPR003141: IPR004013: IPR011708: IPR004365: IPR 004805; KEGG: plm:Plim_1325 DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III subunit alpha; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III subunit alpha; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004270630.1 InterPro IPR004843; KEGG: rba:RB3532 alkaline phosphatase PhoA; PFAM: metallophosphoesterase; SPTR: Similar to alkaline phosphatase phoA; PFAM: Calcineurin-like phosphoesterase YP_004270631.1 COGs: COG3228 conserved hypothetical protein; InterPro IPR010384; KEGG: scl:sce3334 hypothetical protein; PFAM: protein of unknown function DUF980; SPTR: uncharacterized protein; PFAM: phosphoenolpyruvate:glucose-phosphotransferase regulator YP_004270632.1 COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: mno:Mnod_6914 protein of unknown function DUF344; PFAM: polyphosphate kinase 2; SPTR: uncharacterized protein; TIGRFAM: polyphosphate kinase 2; PFAM: polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family YP_004270633.1 COGs: COG1155 H+-ATPase A; InterPro IPR004100: IPR000194; KEGG: cyp:PCC8801_3217 V-type ATP synthase subunit A; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; SPTR: V-type sodium ATPase, catalytic subunit alpha; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004270634.1 KEGG: cyh:Cyan8802_2899 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2764) YP_004270635.1 KEGG: cyp:PCC8801_3222 hypothetical protein; SPTR: uncharacterized protein YP_004270636.1 KEGG: cyh:Cyan8802_2897 V-type ATP synthase subunit K; SPTR: ATP synthase subunit K; PFAM: ATP synthase subunit C YP_004270637.1 COGs: COG1269 H+-ATPase I; InterPro IPR002490; KEGG: cyh:Cyan8802_2896 V-type ATPase 116 kDa subunit; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: V-type ATPase 116kDa subunit family protein; PFAM: V-type ATPase 116kDa subunit family YP_004270638.1 COGs: COG1394 H+-ATPase D; InterPro IPR002699; KEGG: cyp:PCC8801_3225 V-type ATP synthase subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: V-type ATPase, D subunit; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_004270639.1 COGs: COG1156 H+-ATPase B; InterPro IPR004100: IPR000194; KEGG: cyh:Cyan8802_2894 V-type ATP synthase subunit B; PFAM: ATPase, F1/V1/A1 complex, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SPTR: ATP synthase alpha/beta family, nucleotide-binding domain protein; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004270640.1 COGs: COG0683 ABC-type branched-chain amino acid transporters periplasmic component; InterPro IPR020635: IPR002290: IPR017442: IPR001828; KEGG: azo:azo0137 aliphatic amidase expression-regulating protein; PFAM: serine/threonine-protein kinase-like domain; extracellular ligand-binding receptor; PRIAM: Mitogen-activated protein kinase kinase kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: aliphatic amidase expression-regulating protein; PFAM: protein kinase domain; Receptor family ligand binding region; TIGRFAM: urea ABC transporter urea binding protein YP_004270641.1 InterPro IPR006626; KEGG: mac:MA2885 cell surface protein; SPTR: uncharacterized protein; TIGRFAM: hypothetical protein (two copies) YP_004270642.1 InterPro IPR001258; KEGG: min:Minf_0546 hypothetical protein; PFAM: NHL repeat; SPTR: uncharacterized protein YP_004270643.1 KEGG: mgr:MGG_13444 hypothetical protein; SPTR: Predicted protein YP_004270644.1 COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: sli:Slin_5461 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase, MBOAT; SPTR: membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family YP_004270645.1 KEGG: dat:HRM2_29870 AlgJ; SPTR: AlgJ YP_004270646.1 COGs: COG5276 conserved hypothetical protein; InterPro IPR013211; KEGG: kol:Kole_0192 LVIVD repeat protein; PFAM: LVIVD; SPTR: uncharacterized protein; PFAM: LVIVD repeat YP_004270647.1 COGs: COG2217 Cation transport ATPase; InterPro IPR008250: IPR005834: IPR006404: IPR006416: IPR 001757; KEGG: rba:RB4891 cadmium-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Cadmium-transporting ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase P; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_004270648.1 InterPro IPR011447; KEGG: psl:Psta_2830 protein of unknown function DUF1552; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270649.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: plm:Plim_0129 protein of unknown function DUF1592; PFAM: protein of unknown function DUF1588; hypothetical protein; protein of unknown function DUF1595; protein of unknown function DUF1587; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1587); protein of unknown function (DUF1592); protein of unknown function (DUF1588); protein of unknown function (DUF1595); protein of unknown function (DUF1585) YP_004270650.1 COGs: COG5285 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: hoh:Hoch_4055 phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004270651.1 KEGG: acl:ACL_1063 O-glycosyl hydrolase, family protein; SPTR: uncharacterized protein YP_004270652.1 KEGG: dfe:Dfer_0385 metallophosphoesterase; SPTR: uncharacterized protein YP_004270653.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: lic:LIC20188 sodium/solute symporter family protein; PFAM: Sodium/solute symporter; SPTR: Probable sodium:solute symporter; PFAM: Sodium:solute symporter family YP_004270654.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter Mnhsubunit alpha; InterPro IPR001750; KEGG: rce:RC1_3664 Na(+)/H(+) antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Na(+)/H(+) antiporter subunit A; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YP_004270655.1 InterPro IPR007182; KEGG: rca:Rcas_1769 monovalent cation/H+ antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: Na+/H+ antiporter Mnhsubunit beta-related protein; PFAM: Domain related to Mnhsubunit beta of Na+/H+ antiporter; TC 2.A.63.1 YP_004270656.1 COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; InterPro IPR001133; KEGG: gsu:GSU2342 monovalent cation/H+ antiporter subunit C; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: Na(+) H(+) antiporter subunit C; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; TC 2.A.63.1 YP_004270657.1 COGs: COG0651 formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750; KEGG: rrs:RoseRS_2099 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TC 2.A.63.1 YP_004270658.1 COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: cli:Clim_0981 monovalent cation/H+ antiporter subunit E; PFAM: cation antiporter; SPTR: Cation antiporter; PFAM: Na+/H+ ion antiporter subunit; TC 2.A.63.1 YP_004270659.1 InterPro IPR007208; KEGG: tgr:Tgr7_2523 multiple resistance and pH regulation protein F; PFAM: Multiple resistance and pH regulation protein F; SPTR: uncharacterized protein; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF) YP_004270660.1 COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: rca:Rcas_1774 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: Monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit YP_004270661.1 COGs: COG3476 tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog); InterPro IPR004307; KEGG: xac:XAC1819 tryptophan-rich sensory protein; PFAM: TspO/MBR-related protein; SPTR: tryptophan-rich sensory protein; PFAM: TspO/MBR family YP_004270662.1 COGs: COG1506 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: rmr:Rmar_2049 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: prolyl oligopeptidase family YP_004270663.1 KEGG: rba:RB11249 acyl-CoA thioesterase I; SPTR: acyl-CoA thioesterase I-like protein YP_004270664.1 InterPro IPR004714; KEGG: gau:GAU_3782 FixS protein; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: FixS protein; TIGRFAM: cytochrome oxidase maturation protein cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type YP_004270665.1 COGs: COG2217 Cation transport ATPase; InterPro IPR006121: IPR008250: IPR005834: IPR006416: IPR 001757; KEGG: rba:RB6360 cation-transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Probable cation-transporting P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004270666.1 COGs: COG2836 conserved hypothetical protein; KEGG: rba:RB6357 hypothetical protein; SPTR: uncharacterized protein; PFAM: cytochrome C biogenesis protein transmembrane region YP_004270667.1 InterPro IPR008620; KEGG: rba:RB6356 nitrogen fixation protein FixH; PFAM: FixH; SPTR: Similar to nitrogen fixation protein fixH; PFAM: FixH YP_004270668.1 COGs: COG0348 polyferredoxin; InterPro IPR014116; KEGG: rba:RB6355 iron-sulfur protein; SPTR: Probable iron-sulfur protein; TIGRFAM: cytochrome C oxidase cbb3 type, accessory protein FixG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome C oxidase accessory protein FixG YP_004270669.1 InterPro IPR003088; KEGG: rba:RB6353 cytochrome C oxidase (chain III, cbb3-type); PFAM: cytochrome C, class I; SPTR: cytochrome C oxidase (Chain III, cbb3-type); PFAM: cytochrome C; TIGRFAM: cytochrome C oxidase cbb3-type, subunit III YP_004270670.1 KEGG: rba:RB6351 hypothetical protein; SPTR: uncharacterized protein YP_004270671.1 COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883: IPR003468: IPR004677; KEGG: rba:RB6350 bifunctional cbb3-type cytochrome C oxidase subunit I/II; PFAM: cytochrome C oxidase monohaem subunit/FixO; cytochrome C oxidase subunit I; PRIAM: cytochrome-c oxidase; SPTR: Probable cytochrome oxidase subunit (Cbb3-type); TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; cytochrome C oxidase monohaem subunit/FixO; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; cytochrome C oxidase cbb3-type, subunit I YP_004270672.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: psl:Psta_1595 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, Fis family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004270673.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dau:Daud_2177 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004270674.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR003018: IPR013767: IPR003661: IPR003594: IPR 000014; KEGG: psl:Psta_1596 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270675.1 KEGG: rba:RB2412 signal peptide; SPTR: uncharacterized protein YP_004270676.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: psl:Psta_1789 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: Galactosyltransferase; glycosyl transferase family 2 YP_004270677.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: ote:Oter_3265 asparagine synthase; PFAM: Asparagine synthase; SPTR: Asparagine synthase; PFAM: Asparagine synthase YP_004270678.1 KEGG: pca:Pcar_2906 hypothetical protein; SPTR: uncharacterized protein YP_004270679.1 COGs: COG5039 Exopolysaccharide biosynthesis protein; KEGG: bld:BLi03680 YvfF; SPTR: polysaccharide pyruvyl transferase YvfF; PFAM: polysaccharide pyruvyl transferase YP_004270680.1 KEGG: hma:rrnAC2580 immunogenic protein; SPTR: Immunogenic protein YP_004270681.1 InterPro IPR012902; KEGG: plm:Plim_0697 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270682.1 KEGG: rba:RB10040 C-type cytochrome precursor; SPTR: Probable c-type cytochrome YP_004270683.1 KEGG: oca:OCAR_7027 hypothetical protein; SPTR: uncharacterized protein YP_004270684.1 COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: rba:RB11217 dinitrogenase reductase activating glycohydrolase (DraG); PFAM: ADP-ribosylation/crystallin J1; SPTR: Probable dinitrogenase reductase activating glycohydrolase (DraG); PFAM: ADP-ribosylglycohydrolase YP_004270685.1 InterPro IPR010869; KEGG: sus:acid_5041 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270686.1 InterPro IPR007280; KEGG: sus:acid_5040 hypothetical protein; PFAM: peptidase, C-terminal, archaeal/bacterial; SPTR: uncharacterized protein; PFAM: Bacterial pre-peptidase C-terminal domain YP_004270687.1 InterPro IPR003343: IPR011444; KEGG: sus:acid_5039 hypothetical protein; PFAM: protein of unknown function DUF1549; Bacterial Ig-like, group 2; SPTR: uncharacterized protein; manually curated; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270688.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: sus:acid_5038 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SPTR: hypothetical protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C YP_004270689.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR013656: IPR003661: IPR003594: IPR000014: IPR 001610; KEGG: rba:RB3615 sensor protein AtoS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS; SPTR: Sensor protein atoS; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270690.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: rba:RB3614 acetoacetate metabolism regulatory protein AtoC; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: acetoacetate metabolism regulatory protein atoC; PFAM: Response regulator receiver domain; Sigma-54 interaction domain YP_004270691.1 KEGG: psb:Psyr_1661 hypothetical protein; SPTR: uncharacterized protein YP_004270692.1 COGs: COG0782 transcription elongation factor; InterPro IPR001437; KEGG: drm:Dred_1519 GreA/GreB family elongation factor; PFAM: transcription elongation factor, GreA/GreB domain, prokaryotic; SPTR: nucleoside diphosphate kinase regulator protein, ; PFAM: transcription elongation factor, GreA/GreB, C-term YP_004270693.1 InterPro IPR010869; KEGG: plm:Plim_0335 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270694.1 InterPro IPR011444: IPR006558; KEGG: plm:Plim_3921 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SMART: LamG-like jellyroll fold; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270695.1 COGs: COG1414 transcriptional regulator; InterPro IPR005471: IPR014757; KEGG: aar:Acear_0060 transcriptional regulator, IclR family; PFAM: transcription regulator IclR, C-terminal; transcription regulator IclR, N-terminal; SMART: transcription regulator IclR, N-terminal; SPTR: uncharacterized protein; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator YP_004270696.1 InterPro IPR011444; KEGG: psl:Psta_3464 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270697.1 InterPro IPR010869; KEGG: psl:Psta_3463 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270698.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB9192 arylsulphatase A; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004270699.1 InterPro IPR013039; KEGG: rba:RB3034 signal peptide; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1588); Planctomycete cytochrome C YP_004270700.1 InterPro IPR011447: IPR006311; KEGG: rba:RB3036 hypothetical protein; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270701.1 COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: scl:sce1241 hypothetical protein; PFAM: Amidohydrolase 2; SPTR: uncharacterized protein; PFAM: Amidohydrolase YP_004270702.1 KEGG: vvi:100243855 hypothetical protein LOC100243855 YP_004270703.1 InterPro IPR001087: IPR003088: IPR013428: IPR013427; KEGG: rba:RB7973 cytochrome C precursor; PFAM: Lipase, GDSL; cytochrome C, class I; SPTR: Probable cytochrome C; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004270704.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB7560 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase; SPTR: N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase YP_004270705.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: rba:RB11152 multidrug resistance protein; PFAM: Acriflavin resistance protein; SPTR: Probable multidrug resistance protein; PFAM: AcrB/AcrD/AcrF family YP_004270706.1 COGs: COG0845 membrane-fusion protein; InterPro IPR006143; KEGG: rba:RB11154 RND efflux membrane fusion protein precursor; PFAM: Secretion protein HlyD; SPTR: Probable RND efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004270707.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: rba:RB11155 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: Probable outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter outer membrane factor (OMF) lipoprotein, NodT family YP_004270708.1 InterPro IPR011444; KEGG: plm:Plim_1120 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270709.1 InterPro IPR010869: IPR006311; KEGG: plm:Plim_1121 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270710.1 InterPro IPR006311; KEGG: rba:RB5268 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270711.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: caa:Caka_0793 sulfatase; PFAM: Sulfatase; SPTR: N-acetylgalactosamine-6-sulfate sulfatase; PFAM: Sulfatase YP_004270712.1 InterPro IPR004843: IPR012680: IPR006558; KEGG: rba:RB5841 beta-galactosidase; PFAM: metallophosphoesterase; Laminin G, subdomain 2; SMART: LamG-like jellyroll fold; SPTR: Probable beta-galactosidase; PFAM: Calcineurin-like phosphoesterase; Laminin G domain YP_004270713.1 InterPro IPR019734; KEGG: rba:RB7698 hypothetical protein; SPTR: uncharacterized protein YP_004270714.1 KEGG: rba:RB7694 hypothetical protein; SPTR: uncharacterized protein YP_004270715.1 KEGG: rba:RB7692 C-type cytochrome precursor- periplasmic heme binding protein; SPTR: Similar to c-type cytochrome- periplasmic heme binding protein YP_004270716.1 KEGG: rba:RB7689 signal peptide; SPTR: uncharacterized protein YP_004270717.1 InterPro IPR012902; KEGG: rba:RB7685 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270718.1 InterPro IPR012902; KEGG: rba:RB7685 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270719.1 KEGG: fsu:Fisuc_1570 protein of unknown function DUF88; SPTR: Conserved domain protein; PFAM: protein of unknown function DUF88 YP_004270720.1 InterPro IPR000182; KEGG: plm:Plim_3271 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004270721.1 KEGG: psl:Psta_1474 hypothetical protein; SPTR: uncharacterized protein YP_004270722.1 KEGG: psl:Psta_4391 hypothetical protein; SPTR: uncharacterized protein YP_004270723.1 KEGG: plm:Plim_0017 hypothetical protein; SPTR: uncharacterized protein; PFAM: acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_004270724.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: plm:Plim_3906 helix-turn-helix-domain containing protein AraC type; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004270725.1 InterPro IPR000834; KEGG: plm:Plim_0309 peptidase M14, carboxypeptidase A; PFAM: peptidase M14, carboxypeptidase A; SPTR: peptidase M14, carboxypeptidase A; PFAM: Zinc carboxypeptidase YP_004270726.1 KEGG: plm:Plim_0034 biotin apo-protein ligase-related protein; SPTR: Biotin apo-protein ligase-related protein; PFAM: Biotin-protein ligase, N terminal YP_004270727.1 InterPro IPR012902; KEGG: plm:Plim_0033 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270728.1 KEGG: dre:100334944 LReO_3-like YP_004270729.1 InterPro IPR012902; KEGG: plm:Plim_0033 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270730.1 KEGG: rba:RB8881 hypothetical protein; SPTR: uncharacterized protein YP_004270731.1 COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: ppd:Ppro_0189 hypothetical protein; PFAM: protein of unknown function DUF159; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG2135 YP_004270732.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: rba:RB4241 RNA polymerase sigma-E factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004270733.1 InterPro IPR006860; KEGG: rba:RB908 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004270734.1 InterPro IPR011444; KEGG: sus:acid_6547 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270735.1 InterPro IPR010869: IPR006311; KEGG: psl:Psta_2729 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270736.1 InterPro IPR012902; KEGG: plm:Plim_2092 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270737.1 KEGG: psl:Psta_3013 hypothetical protein; SPTR: uncharacterized protein YP_004270738.1 KEGG: tne:Tneu_1114 hypothetical protein YP_004270739.1 InterPro IPR008858; KEGG: rba:RB11421 60-kDa SS-A/Ro ribonucleoprotein; PFAM: TROVE; SPTR: uncharacterized protein; PFAM: TROVE domain YP_004270740.1 KEGG: cpv:cgd6_5400 protein with signal peptide plus thr stretch, cys rich, mucin; SPTR: uncharacterized protein YP_004270741.1 KEGG: rba:RB4317 signal peptide; SPTR: uncharacterized protein YP_004270742.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: rba:RB4314 hypothetical protein; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004270743.1 KEGG: rba:RB4311 signal peptide; SPTR: uncharacterized protein YP_004270744.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089: IPR006143; KEGG: rba:RB4310 hypothetical protein; PFAM: Biotin/lipoyl attachment; SPTR: Probable membrane protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004270745.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: rba:RB4309 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004270746.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: rba:RB4305 hypothetical protein; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004270747.1 KEGG: mmi:MMAR_5114 epoxide hydrolase EphA; SPTR: uncharacterized protein YP_004270748.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: mhu:Mhun_2813 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase; Domain of unknown function (DUF3471) YP_004270750.1 KEGG: rba:RB6923 hypothetical protein; SPTR: uncharacterized protein YP_004270751.1 KEGG: rba:RB3828 hypothetical protein; SPTR: uncharacterized protein YP_004270752.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB695 N-acetyl-galactosamine-6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetyl-galactosamine-6-sulfatase (GALNS); PFAM: Sulfatase YP_004270753.1 COGs: COG0235 ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: rba:RB681 L-fuculose-phosphate aldolase; PFAM: class II aldolase/adducin, N-terminal; SPTR: Probable L-fuculose-phosphate aldolase; PFAM: class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_004270754.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: plm:Plim_3420 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; PRIAM: Rhamnulokinase; SPTR: carbohydrate kinase, FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase YP_004270755.1 KEGG: rba:RB674 hypothetical protein; SPTR: uncharacterized protein YP_004270756.1 COGs: COG1457 Purine-cytosine permease and related protein; KEGG: rba:RB675 hypothetical protein; SPTR: uncharacterized protein YP_004270757.1 COGs: COG4806 L-rhamnose isomerase; InterPro IPR009308; KEGG: rba:RB678 L-rhamnose isomerase; PFAM: Rhamnose isomerase; PRIAM: L-rhamnose isomerase; SPTR: L-rhamnose isomerase; TIGRFAM: Rhamnose isomerase; PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase YP_004270758.1 COGs: COG4977 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR013096: IPR000005: IPR018060; KEGG: rba:RB680 L-rhamnose operon transcriptional activator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: L-rhamnose operon transcriptional activator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_004270759.1 KEGG: rba:RB3006 sialidase; SPTR: Probable sialidase YP_004270760.1 COGs: COG0591 Na+/proline symporter; InterPro IPR006652: IPR001734: IPR019900; KEGG: rba:RB3349 sodium:solute symporter; PFAM: Sodium/solute symporter; Kelch repeat type 1; SPTR: uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter SSS family YP_004270761.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: rba:RB3352 N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase; PRIAM: N-acetylneuraminate lyase; SPTR: Probable N-acetylneuraminate lyase; manually curated; PFAM: dihydrodipicolinate synthetase family; TIGRFAM: N-acetylneuraminate lyase YP_004270762.1 KEGG: dre:100331349 myosin-3-like; SPTR: ADP-ribosyltransferase toxin aexT (Exoenzyme T); manually curated YP_004270763.1 COGs: COG1609 transcriptional regulators; InterPro IPR000005: IPR018060; KEGG: caa:Caka_1120 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004270764.1 InterPro IPR013498; KEGG: psl:Psta_0839 DNA topoisomerase type IA zn finger domain protein; PFAM: DNA topoisomerase, type IA, zn finger; SPTR: uncharacterized protein; PFAM: Topoisomerase DNA binding C4 zinc finger; protein of unknown function (DUF2726) YP_004270765.1 KEGG: rba:RB10300 signal peptide; SPTR: uncharacterized protein YP_004270766.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: amr:AM1_2542 acriflavin resistance protein, PFAM: Acriflavin resistance protein; SPTR: uncharacterized protein; PFAM: AcrB/AcrD/AcrF family YP_004270767.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: ana:alr1655 hypothetical protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter MFP subunit YP_004270768.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR013027; KEGG: xcb:XC_4090 Rossmann-fold NAD(P)(+)-binding proteins; region: NADB_Rossmann; cl09931; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Halogenase; PFAM: FAD binding domain YP_004270769.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR006076; KEGG: xal:XALc_0139 halogenase protein; PFAM: FAD dependent oxidoreductase; SPTR: halogenase protein; PFAM: tryptophan halogenase YP_004270770.1 COGs: COG3321 polyketide synthase modules and related protein; InterPro IPR014030: IPR014031: IPR014043: IPR013968: IPR 006163; KEGG: mau:Micau_2464 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; acyl transferase; polyketide synthase, KR; phosphopantetheine-binding; PRIAM: 6-methylsalicylic acid synthase., 6-deoxyerythronolide-B synthase; SPTR: polyketide synthase type I; PFAM: phosphopantetheine attachment site; acyl transferase domain; KR domain; beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain YP_004270771.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873: IPR006163; KEGG: ava:Ava_3987 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; phosphopantetheine-binding; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: phosphopantetheine attachment site; AMP-binding enzyme YP_004270772.1 COGs: COG2986 histidine ammonia-lyase; InterPro IPR001106; KEGG: ava:Ava_3988 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: histidine ammonia-lyase; SPTR: histidine ammonia-lyase; PFAM: phenylalanine and histidine ammonia-lyase; TIGRFAM: phenylalanine ammonia-lyase YP_004270773.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB13148 iduronate-sulfatase or arylsulfatase A; PFAM: Sulfatase; PRIAM: Steryl-sulfatase; SPTR: Iduronate-sulfatase or arylsulfatase A; PFAM: Sulfatase YP_004270774.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: cag:Cagg_2910 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: ribose operon repressor RbsR; PFAM: Bacterial regulatory proteins, lacI family; family YP_004270775.1 InterPro IPR001910; KEGG: rba:RB1386 nucleoside hydrolase; PFAM: inosine/uridine-preferring nucleoside hydrolase; SPTR: uncharacterized protein; PFAM: inosine-uridine preferring nucleoside hydrolase YP_004270776.1 InterPro IPR001910; KEGG: rba:RB1386 nucleoside hydrolase; PFAM: inosine/uridine-preferring nucleoside hydrolase; SPTR: uncharacterized protein; PFAM: inosine-uridine preferring nucleoside hydrolase YP_004270777.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611: IPR011877; KEGG: sth:STH771 ribokinase; PFAM: carbohydrate/purine kinase; PRIAM: ribokinase; SPTR: ribokinase; TIGRFAM: ribokinase, bacterial; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_004270778.1 COGs: COG1879 ABC-type sugar transporter periplasmic component; InterPro IPR001761; KEGG: rba:RB5973 D-ribose-binding periplasmic protein; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: D-ribose-binding periplasmic protein; PFAM: family YP_004270779.1 COGs: COG1129 ABC-type sugar transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: rba:RB5972 ribose transport ATP-binding protein RbsA; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ribose transport ATP-binding protein RbsA; PFAM: ABC transporter YP_004270780.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transporters permeases; InterPro IPR001851; KEGG: rba:RB5971 ribose transporter permease RbsC; PFAM: Bacterial inner-membrane translocator; SPTR: ribose transporter permease RbsC; PFAM: Branched-chain amino acid transporter / permease YP_004270781.1 InterPro IPR001910; KEGG: rba:RB1420 signal peptide; PFAM: inosine/uridine-preferring nucleoside hydrolase; SPTR: uncharacterized protein; PFAM: inosine-uridine preferring nucleoside hydrolase YP_004270782.1 InterPro IPR001910; KEGG: rba:RB11055 hypothetical protein; PFAM: inosine/uridine-preferring nucleoside hydrolase; SPTR: uncharacterized protein; PFAM: inosine-uridine preferring nucleoside hydrolase YP_004270783.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB1736 arylsulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-4-sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004270784.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB686 arylsulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004270785.1 KEGG: rba:RB5286 signal peptide; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004270787.1 COGs: COG3669 alpha-L-fucosidase; InterPro IPR000933; KEGG: rba:RB5816 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; PRIAM: alpha-L-fucosidase; SMART: glycoside hydrolase, family 29; SPTR: alpha-L-fucosidase; PFAM: alpha-L-fucosidase YP_004270788.1 COGs: COG0738 Fucose permease; InterPro IPR011701: IPR005275; KEGG: pat:Patl_0801 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose:H+ symporter permease; TIGRFAM: L-fucose permease; PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease YP_004270789.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_03330 probable sulfatase AtsG; PFAM: Sulfatase; SPTR: Probable sulfatase atsG; PFAM: Sulfatase YP_004270790.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4017 sulfatase; PFAM: Sulfatase; SPTR: Probable sulfatase; PFAM: Sulfatase YP_004270791.1 COGs: COG0584 glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: rba:RB2825 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase family YP_004270792.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_3958 sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Choline sulfatase; PFAM: Sulfatase YP_004270793.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB5281 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-4-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004270794.1 KEGG: plm:Plim_2865 hypothetical protein; SPTR: uncharacterized protein YP_004270795.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: rba:RB9543 membrane protein- a permease; PFAM: Uncharacterised protein family UPF0118; SPTR: membrane protein- a permease; PFAM: Domain of unknown function DUF20 YP_004270796.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: rba:RB9542 RND multidrug efflux transporter MexF; PFAM: Acriflavin resistance protein; SPTR: RND multidrug efflux transporter MexF; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004270797.1 COGs: COG0845 membrane-fusion protein; InterPro IPR006143; KEGG: rba:RB9541 RND multidrug efflux membrane fusion protein MexE precursor; PFAM: Secretion protein HlyD; SPTR: RND multidrug efflux membrane fusion protein MexE; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004270798.1 COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: ssm:Spirs_0915 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; PRIAM: 2-dehydro-3-deoxy-phosphogluconate aldolase; SPTR: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase subfamily; TIGRFAM: KDPG/KHG aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase YP_004270799.1 KEGG: spo:SPAC23H4.09 curved DNA-binding protein Cdb4; SPTR: Curved DNA-binding protein YP_004270800.1 InterPro IPR005644; KEGG: plm:Plim_4190 NolW domain protein; PFAM: NolW-like; SPTR: uncharacterized protein; PFAM: Bacterial type II/III secretion system short domain YP_004270801.1 COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831: IPR001482: IPR003593; KEGG: plm:Plim_4189 type II secretion system protein E; PFAM: type II secretion system protein E; general secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: general secretion pathway protein E; PFAM: type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E YP_004270802.1 COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: plm:Plim_0156 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type 4 fimbrial assembly protein pilC; PFAM: Bacterial type II secretion system protein F domain YP_004270803.1 InterPro IPR012902: IPR013545: IPR010054; KEGG: plm:Plim_2895 general secretion pathway protein G; PFAM: type II secretion system protein G; prepilin-type cleavage/methylation, N-terminal; SPTR: general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; prepilin-type cleavage/methylation, N-terminal; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain YP_004270804.1 InterPro IPR012902; KEGG: psl:Psta_3670 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270805.1 InterPro IPR012902; KEGG: plm:Plim_3637 type II secretion system protein I/J; SPTR: uncharacterized protein; TIGRFAM: general secretion pathway protein I YP_004270806.1 InterPro IPR012902; KEGG: plm:Plim_3638 hypothetical protein; SPTR: uncharacterized protein; PFAM: Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270807.1 KEGG: plm:Plim_3639 type II secretory pathway component PulK-like protein; SPTR: Probable general secretion pathway protein K; PFAM: general secretion pathway protein K YP_004270808.1 InterPro IPR007813; KEGG: plm:Plim_3902 hypothetical protein; PFAM: fimbrial assembly; SPTR: uncharacterized protein; PFAM: Competence protein A; TIGRFAM: general secretion pathway protein L YP_004270809.1 KEGG: plm:Plim_3903 Ig family protein; SPTR: uncharacterized protein YP_004270810.1 COGs: COG1450 type II secretory pathway component PulD; InterPro IPR005644: IPR004846; KEGG: plm:Plim_3688 type II and III secretion system protein; PFAM: type II/III secretion system; NolW-like; SPTR: general secretion pathway protein D (Precursor); PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D YP_004270811.1 KEGG: plm:Plim_3687 hypothetical protein; SPTR: uncharacterized protein YP_004270812.1 InterPro IPR007055; KEGG: plm:Plim_3416 transporter; PFAM: transport-associated; SPTR: transporter; PFAM: phospholipid-binding domain YP_004270813.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: cak:Caul_0812 beta-lactamase; PFAM: beta-lactamase-related; SPTR: Est2K; PFAM: beta-lactamase YP_004270814.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523: IPR004488; KEGG: cyn:Cyan7425_2333 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Probable cation transporter; TIGRFAM: Magnesium/cobalt transporter CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transporter (corA) YP_004270815.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: cyt:cce_4159 hypothetical protein; PFAM: protein of unknown function DUF318, transmembrane; SPTR: Uncharacterized conserved membrane protein, probable transporter; PFAM: Predicted permease YP_004270816.1 InterPro IPR001478; KEGG: rba:RB3023 protease EcfE; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Similar to protease ecfE; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004270817.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: gur:Gura_0851 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY; PFAM: Cyclic nucleotide-binding domain YP_004270818.1 InterPro IPR011444; KEGG: rba:RB8437 cis/trans isomerase; PFAM: protein of unknown function DUF1549; SPTR: Similar to cis/trans isomerase; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270819.1 InterPro IPR010869: IPR006311; KEGG: rba:RB8440 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270820.1 KEGG: caa:Caka_0568 hypothetical protein; SPTR: uncharacterized protein YP_004270821.1 KEGG: psl:Psta_1458 hypothetical protein; SPTR: uncharacterized protein YP_004270822.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270823.1 COGs: COG0169 shikimate 5-dehydrogenase; HAMAP: shikimate dehydrogenase; InterPro IPR013708: IPR006151: IPR011342; KEGG: avn:Avin_03620 shikimate/quinate 5-dehydrogenase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate dehydrogenase substrate binding, N-terminal; SPTR: shikimate/quinate 5-dehydrogenase; TIGRFAM: Quinate/shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain; shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_004270824.1 KEGG: rba:RB7120 hypothetical protein; SPTR: uncharacterized protein YP_004270825.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: rba:RB6860 NADH-dependent dehydrogenase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004270826.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006104: IPR013428: IPR013427; KEGG: psl:Psta_3304 membrane-bound dehydrogenase domain protein; PFAM: oxidoreductase, N-terminal; glycoside hydrolase family 2, carbohydrate-binding; SPTR: uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; oxidoreductase family, NAD-binding Rossmann fold; glycosyl hydrolases family 2, sugar binding domain; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004270827.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4017 sulfatase; PFAM: Sulfatase; SPTR: Probable sulfatase; PFAM: Sulfatase YP_004270828.1 InterPro IPR010496; KEGG: sli:Slin_5725 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004270829.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB3755 iduronate-2-sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase YP_004270830.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB8030 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase; SPTR: N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PFAM: Sulfatase YP_004270831.1 InterPro IPR010869: IPR006311; KEGG: rba:RB5428 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270832.1 InterPro IPR011444; KEGG: rba:RB5426 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004270833.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB5424 iduronate-2-sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase YP_004270834.1 InterPro IPR006860: IPR006558; KEGG: rba:RB5421 cycloinulo-oligosaccharide fructanotransferase; PFAM: FecR protein; SMART: LamG-like jellyroll fold; SPTR: Similar to cycloinulo-oligosaccharide fructanotransferase; PFAM: FecR protein YP_004270835.1 InterPro IPR007627: IPR014284: IPR014331; KEGG: rba:RB5420 hypothetical protein; PFAM: RNA polymerase sigma-70 region 2; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004270836.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB200 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase YP_004270837.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB9549 iduronate-sulfatase (partial) and sulfatase 1 precursor; PFAM: Sulfatase; SPTR: Iduronate-sulfatase and sulfatase 1; PFAM: Sulfatase YP_004270838.1 COGs: COG1609 transcriptional regulators; InterPro IPR000005: IPR018060; KEGG: rba:RB6542 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family YP_004270839.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: plm:Plim_1283 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004270840.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR019546: IPR012307: IPR006311; KEGG: ttr:Tter_2313 oxidoreductase; PFAM: Xylose isomerase, TIM barrel domain; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270841.1 KEGG: rba:RB8835 secreted alkaline phosphatase (fragment); SPTR: Probable secreted alkaline phosphatase; PFAM: PhoD-like phosphatase YP_004270842.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR002818; KEGG: plm:Plim_1677 ThiJ/PfpI domain protein; PFAM: ThiJ/PfpI; SPTR: Probable intracellular proteinase I; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease PfpI family YP_004270843.1 COGs: COG0659 sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: hoh:Hoch_4411 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter; PFAM: sulfate transporter family YP_004270844.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750; KEGG: rba:RB10310 NADH dehydrogenase (ubiquinone) chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; SPTR: NADH dehydrogenase (Ubiquinone) chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains YP_004270845.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter Mnhsubunit alpha; InterPro IPR001750; KEGG: rba:RB10313 NADH subunit 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH subunit 5; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YP_004270846.1 COGs: COG3002 conserved hypothetical protein; HAMAP: UPF0753 protein; InterPro IPR018752; KEGG: rba:RB10314 hypothetical protein; PFAM: protein of unknown function DUF2309; SPTR: UPF0753 protein PM8797T_24571; PFAM: Uncharacterized protein conserved in bacteria (DUF2309) YP_004270848.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003661: IPR003594: IPR000014; KEGG: rba:RB10322 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component sensor histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box YP_004270849.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: rba:RB2396 acetoacetate metabolism regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: acetoacetate metabolism regulatory protein atoC; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004270850.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284; KEGG: psl:Psta_4286 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004270851.1 KEGG: plm:Plim_4092 hypothetical protein; SPTR: uncharacterized protein YP_004270852.1 KEGG: psl:Psta_4284 hypothetical protein; SPTR: uncharacterized protein YP_004270853.1 InterPro IPR011444: IPR003343; KEGG: psl:Psta_4283 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SMART: Bacterial Ig-like, group 2; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270854.1 InterPro IPR010869; KEGG: plm:Plim_4095 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004270855.1 KEGG: psl:Psta_4281 hypothetical protein; SPTR: uncharacterized protein YP_004270856.1 InterPro IPR012680; KEGG: psl:Psta_1598 hypothetical protein; PFAM: Laminin G, subdomain 2; SPTR: uncharacterized protein; PFAM: Laminin G domain YP_004270857.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB7875 arylsulfatase A; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004270858.1 InterPro IPR013428: IPR013427; KEGG: psl:Psta_1635 membrane-bound dehydrogenase domain protein; SPTR: cytochrome C-like protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004270859.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917: IPR013658; KEGG: rba:RB5305 arylsulphatase A; PFAM: Sulfatase; SMP-30/gluconolaconase/LRE-like region; SPTR: Arylsulphatase A; PFAM: SMP-30/gluconolaconase/LRE-like region; Sulfatase YP_004270860.1 COGs: COG0657 esterase/lipase; KEGG: psl:Psta_1537 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: alpha/beta hydrolase fold YP_004270861.1 COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: bgf:BC1003_5297 4-hydroxyproline epimerase; PFAM: Proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase; PFAM: Proline racemase YP_004270862.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004270863.1 InterPro IPR012902; KEGG: plm:Plim_2542 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004270864.1 KEGG: bvi:Bcep1808_6736 conjugal transfer mating pair stabilization protein TraN; SPTR: uncharacterized protein YP_004270865.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290; KEGG: aac:Aaci_1325 serine/threonine protein kinase with PASTA sensor(s); PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: Probable serine/threonine-protein kinase pknB; PFAM: protein kinase domain YP_004270866.1 COGs: COG4566 Response regulator; InterPro IPR001789: IPR000792; KEGG: dar:Daro_3108 LuxR response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SPTR: Regulatory protein, LuxR:Response regulator receiver; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004270867.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR013656: IPR003661: IPR003594: IPR000014; KEGG: aba:acid345_3712 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270868.1 COGs: COG0369 Sulfite reductase subunit alpha (flavoprotein); InterPro IPR007202: IPR003097: IPR001433; KEGG: rba:RB380 sulfite reductase; PFAM: FAD-binding, type 1; Fe-S cluster; oxidoreductase FAD/NAD(P)-binding; PRIAM: NADPH--hemoprotein reductase; SPTR: Sulfite reductase [NADPH] flavoprotein alpha-component; PFAM: Fe-S cluster; FAD binding domain; oxidoreductase NAD-binding domain; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha-component YP_004270869.1 COGs: COG0155 Sulfite reductase subunit beta (hemoprotein); InterPro IPR005117: IPR006067: IPR012798; KEGG: plm:Plim_3055 precorrin-3B synthase; PFAM: nitrite/sulphite reductase 4Fe-4S domain; nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; PRIAM: Ferredoxin--nitrite reductase; SPTR: precorrin-3B synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobG-like; PFAM: nitrite and sulphite reductase 4Fe-4S domain; nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: precorrin-3B synthase YP_004270870.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR006963: IPR006656: IPR006657; KEGG: scl:sce8491 nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; PRIAM: nitrate reductase; SPTR: Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004270871.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; KEGG: plm:Plim_3053 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Molybdopterin oxidoreductase, iron sulfur subunit; PFAM: DMSO reductase anchor subunit (DmsC) YP_004270872.1 KEGG: xau:Xaut_1081 hypothetical protein; SPTR: uncharacterized protein YP_004270873.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transporter ATPase component; InterPro IPR003439: IPR005890: IPR003593; KEGG: caa:Caka_0343 nitrate ABC transporter ATPases C and D; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: nitrate transport ATP-binding protein; TIGRFAM: nitrate transport ATP-binding subunit C/D; PFAM: ABC transporter; TIGRFAM: nitrate transport ATP-binding subunits C and D YP_004270874.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: caa:Caka_0342 ABC transporter; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter; TIGRFAM: nitrate transport ATP-binding subunits C and D YP_004270875.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transporter permease; InterPro IPR000515; KEGG: caa:Caka_0341 binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: nitrate transport permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004270876.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components; KEGG: caa:Caka_0340 NMT1/THI5 like domain protein; SPTR: uncharacterized protein; PFAM: NMT1/THI5 like YP_004270877.1 SPTR: Mucin 5AC, oligomeric mucus/gel-forming YP_004270878.1 KEGG: plm:Plim_2317 hypothetical protein; SPTR: uncharacterized protein YP_004270879.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mfa:Mfla_2669 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004270880.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013655: IPR003661: IPR003594: IPR001789: IPR 008207: IPR000014: IPR001610; KEGG: mgm:Mmc1_3189 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: Response regulator receiver domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270881.1 KEGG: met:M446_5104 signal transduction histidine kinase, nitrogen specific, NtrB; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB YP_004270882.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cyc:PCC7424_2242 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain YP_004270883.1 COGs: COG4566 Response regulator; InterPro IPR001789: IPR000792; KEGG: rme:Rmet_1194 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SPTR: Two component LuxR family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004270884.1 COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: psl:Psta_0130 response regulator receiver protein; SPTR: Response regulator receiver protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004270885.1 COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: rba:RB1147 secretory protein kinase; PFAM: type II secretion system protein E; SPTR: Secretory protein kinase; PFAM: type II/IV secretion system protein YP_004270886.1 COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: psl:Psta_0128 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004270887.1 COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: psl:Psta_0127 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004270888.1 InterPro IPR012495; KEGG: rba:RB1153 signal peptide; PFAM: TadE-like; SPTR: uncharacterized protein; PFAM: TadE-like protein YP_004270889.1 InterPro IPR012495; KEGG: psl:Psta_0125 TadE family protein; PFAM: TadE-like; SPTR: TadE family protein; PFAM: TadE-like protein YP_004270890.1 KEGG: psl:Psta_0124 hypothetical protein; SPTR: uncharacterized protein YP_004270891.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterPro IPR013656: IPR013767: IPR013655: IPR003018: IPR 003661: IPR003594: IPR001789: IPR000014: IPR001610; KEGG: gvi:gll3736 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS fold; PAS fold-4; PAS fold-3; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; PAS; Signal transduction response regulator, receiver domain; SPTR: Two-component sensor histidine kinase; TIGRFAM: PAS; PFAM: Response regulator receiver domain; GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270892.1 KEGG: ter:Tery_0202 transcriptional regulator; SPTR: uncharacterized protein YP_004270893.1 KEGG: ddi:DDB_G0284897 ABC1 family protein kinase; SPTR: Probable serine/threonine-protein kinase abkD YP_004270894.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR014284; KEGG: rba:RB9437 RNA polymerase sigma factor Y; PFAM: RNA polymerase sigma-70 region 2; SPTR: Probable RNA polymerase sigma factor Y; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004270895.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR002290; KEGG: hoh:Hoch_6090 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; SPTR: Probable serine/threonine-protein kinase pknB; PFAM: protein kinase domain YP_004270896.1 KEGG: aac:Aaci_1746 anti-sigma-factor antagonist; SPTR: anti-sigma factor antagonist YP_004270897.1 InterPro IPR011447; KEGG: rba:RB6904 hypothetical protein; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004270898.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: rba:RB6901 hypothetical protein; PFAM: hypothetical protein; protein of unknown function DUF1587; protein of unknown function DUF1595; hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); Planctomycete cytochrome C; protein of unknown function (DUF1595); protein of unknown function (DUF1585) YP_004270899.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterPro IPR013656: IPR013655: IPR003018: IPR003661: IPR 003594: IPR001789: IPR000014: IPR001610; KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS; PAC motif; SPTR: PAS protein; TIGRFAM: PAS; PFAM: Response regulator receiver domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004270900.1 COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR007197; KEGG: rba:RB3303 hypothetical protein; PFAM: radical SAM; SPTR: uncharacterized protein YP_004270901.1 COGs: COG1573 uracil-DNA glycosylase; InterPro IPR005122: IPR005273; KEGG: rba:RB3915 DNA polymerase related protein; PFAM: uracil-DNA glycosylase-like; SPTR: DNA polymerase related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; manually curated; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_004270902.1 KEGG: pbr:PB2503_02537 hypothetical protein; SPTR: uncharacterized protein YP_004270903.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: rba:RB12296 ketoacyl reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Ketoacyl reductase; PFAM: short chain dehydrogenase YP_004270904.1 KEGG: npu:Npun_R4581 hypothetical protein; SPTR: uncharacterized protein YP_004270905.1 COGs: COG0753 catalase; InterPro IPR018028: IPR010582; KEGG: cse:Cseg_0759 catalase; PFAM: catalase related subgroup; catalase-related immune responsive; PRIAM: catalase; SPTR: catalase; PFAM: catalase; catalase-related immune-responsive YP_004270906.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_3683 HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase, group 1; PRIAM: Sucrose-phosphate synthase; SPTR: Sucrose phosphate synthase; PFAM: glycosyl transferases group 1; TIGRFAM: sucrose-phosphate synthase, , glycosyltransferase domain YP_004270907.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rba:RB4337 glycosyl transferase; PFAM: glycosyl transferase, family 2; SPTR: Similar to glycosyl transferase; PFAM: glycosyl transferase family 2 YP_004270908.1 KEGG: rba:RB4336 hypothetical protein; SPTR: uncharacterized protein; PFAM: glycosyltransferase family 28 C-terminal domain YP_004270909.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rba:RB4333 galactosyltransferase; PFAM: glycosyl transferase, group 1; SPTR: Probable galactosyltransferase; PFAM: glycosyl transferases group 1 YP_004270910.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: rba:RB4327 multidrug ABC transporter; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Probable multi-drug efflux transporter; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004270912.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: kra:Krad_2958 response regulator receiver and ANTAR domain protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain YP_004270913.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: psl:Psta_1596 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: PAS/PAC sensor signal transduction histidine kinase YP_004270914.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917: IPR010496; KEGG: fbc:FB2170_09456 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: protein of unknown function DUF1080; Sulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase; Domain of Unknown Function (DUF1080) YP_004270915.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB10117 sulfatase AtsG; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Probable sulfatase atsG; PFAM: Sulfatase YP_004270916.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB3403 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004270917.1 COGs: COG1785 alkaline phosphatase; InterPro IPR001952; KEGG: plm:Plim_3159 alkaline phosphatase; PFAM: alkaline phosphatase; SMART: alkaline phosphatase; SPTR: Probable alkaline phosphatase; PFAM: alkaline phosphatase YP_004270918.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734: IPR019900; KEGG: cyt:cce_3119 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Sodium solute transporter family protein; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: sodium/proline symporter; transporter SSS family YP_004270919.1 InterPro IPR000182: IPR012772; KEGG: bav:BAV2374 L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: Diaminobutyrate acetyltransferase; SPTR: L-2,4-diaminobutyric acid acetyltransferase; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase YP_004270920.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814: IPR004637: IPR012773; KEGG: sen:SACE_0484 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Diaminobutyrate--2-oxoglutarate transaminase; SPTR: Diaminobutyrate--2-oxoglutarate aminotransferase; TIGRFAM: Diaminobutyrate--2-oxoglutarate aminotransferase; Diaminobutyrate-2-oxoglutarate transaminase; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; diaminobutyrate--2-oxoglutarate aminotransferase YP_004270921.1 HAMAP: L-ectoine synthase; InterPro IPR010462; KEGG: bpf:BpOF4_10765 L-ectoine synthase; PFAM: Ectoine synthase; PRIAM: Ectoine synthase; SPTR: Ectoine synthase; PFAM: Ectoine synthase YP_004270922.1 InterPro IPR008775: IPR012774; KEGG: nhl:Nhal_2706 ectoine hydroxylase; PFAM: phytanoyl-CoA dioxygenase; SPTR: L-proline 4-hydroxylase; TIGRFAM: Ectoine hydroxylase; PFAM: phytanoyl-CoA dioxygenase (PhyH); TIGRFAM: ectoine hydroxylase YP_004270923.1 InterPro IPR000835; KEGG: maq:Maqu_3333 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator, TrmB; PFAM: MarR family YP_004270924.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR001140: IPR003439: IPR003593; KEGG: psl:Psta_3327 ABC transporter; PFAM: ABC transporter-like; ABC transporter transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region YP_004270925.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_1325 sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase; TIGRFAM: choline-sulfatase YP_004270926.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4880 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase YP_004270927.1 InterPro IPR010093; KEGG: gwc:GWCH70_1737 DNA binding domain protein, excisionase family; SPTR: DNA binding domain, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase family YP_004270928.1 InterPro IPR015330: IPR014819; KEGG: lsa:LSA0594 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 2; SPTR: uncharacterized protein; PFAM: Primase C terminal 2 (PriCT-2); Bifunctional DNA primase/polymerase, N-terminal YP_004270929.1 KEGG: vfm:VFMJ11_0075 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; SPTR: uncharacterized protein YP_004270930.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: enc:ECL_01697 ATP-dependent protease; PFAM: peptidase S14, ClpP; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease YP_004270931.1 KEGG: cre:CHLREDRAFT_167376 hypothetical protein; SPTR: Predicted protein YP_004270932.1 KEGG: cai:Caci_7273 ribonuclease, Rne/Rng family; SPTR: prolyl-tRNA synthetase YP_004270933.1 KEGG: nmg:Nmag_2507 FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase YP_004270934.1 KEGG: ckr:CKR_2881 hypothetical protein; SPTR: Gp25 protein YP_004270935.1 KEGG: fre:Franean1_3837 transposase IS4 family protein; SPTR: transposase IS4 family protein YP_004270936.1 KEGG: sen:SACE_5599 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1778) YP_004270937.1 KEGG: mgr:MGG_05479 hypothetical protein; SPTR: uncharacterized protein YP_004270938.1 KEGG: ppl:POSPLDRAFT_101691 hypothetical protein; SPTR: uncharacterized protein YP_004270940.1 InterPro IPR002104; KEGG: tpd:Teth39_0093 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family YP_004270941.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: plm:Plim_3007 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004270942.1 KEGG: sna:Snas_5902 hypothetical protein; SPTR: uncharacterized protein YP_004270943.1 InterPro IPR013429; KEGG: psl:Psta_3545 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, SPTR: Regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family YP_004270944.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254; KEGG: psl:Psta_2452 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; SPTR: uncharacterized protein; PFAM: Trypsin YP_004270945.1 COGs: COG0386 glutathione peroxidase; InterPro IPR000889; KEGG: rba:RB2244 glutathione peroxidase; PFAM: glutathione peroxidase; PRIAM: peroxiredoxin; SPTR: glutathione peroxidase; PFAM: glutathione peroxidase YP_004270946.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: plm:Plim_1451 hypothetical protein; PFAM: WD40 repeat, subgroup; SPTR: hypothetical protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C YP_004270947.1 InterPro IPR003343: IPR011444; KEGG: plm:Plim_1450 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Bacterial Ig-like, group 2; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004270948.1 InterPro IPR007280; KEGG: plm:Plim_1449 hypothetical protein; PFAM: peptidase, C-terminal, archaeal/bacterial; SPTR: uncharacterized protein; PFAM: Bacterial pre-peptidase C-terminal domain YP_004270949.1 InterPro IPR010869: IPR006311; KEGG: plm:Plim_1448 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004270950.1 COGs: COG2813 16S RNA G1207 methylase RsmC; InterPro IPR007848; KEGG: psl:Psta_4039 methyltransferase small; PFAM: methyltransferase small; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: methyltransferase small; PFAM: methyltransferase small domain YP_004270951.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: trq:TRQ2_0197 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004270952.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: plm:Plim_2180 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004270953.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR017442: IPR020635: IPR002290: IPR006626; KEGG: plm:Plim_2182 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; Parallel beta-helix repeat; SPTR: Probable protein kinase yloP- serine/threonine protein kinase; PFAM: protein kinase domain YP_004270954.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: plm:Plim_2171 beta-lactamase; PFAM: beta-lactamase-related; SPTR: uncharacterized protein; PFAM: beta-lactamase YP_004270955.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646; KEGG: psl:Psta_2057 tRNA adenylyltransferase; PFAM: poly A polymerase, head domain; SPTR: metal dependent phosphohydrolase; PFAM: poly A polymerase head domain; TIGRFAM: poly(A) polymerase YP_004270956.1 KEGG: plm:Plim_2088 hypothetical protein; SPTR: uncharacterized protein YP_004270957.1 COGs: COG5271 ATPase AAA containing von Willebrand factor A (vWA) domain; KEGG: plm:Plim_2314 hypothetical protein; SPTR: uncharacterized protein YP_004270958.1 InterPro IPR010768; KEGG: plm:Plim_2313 hypothetical protein; PFAM: protein of unknown function DUF1355; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1355) YP_004270959.1 InterPro IPR011933; KEGG: plm:Plim_2312 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double transmembrane domain; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain YP_004270960.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR017941: IPR002744; KEGG: plm:Plim_2392 protein of unknown function DUF59; PFAM: protein of unknown function DUF59; Rieske [2Fe-2S] iron-sulphur domain; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF59; Rieske [2Fe-2S] domain YP_004270961.1 COGs: COG0719 ABC-type transporter involved in Fe-S cluster assembly permease; InterPro IPR000825: IPR011542; KEGG: plm:Plim_2391 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_004270962.1 COGs: COG0719 ABC-type transporter involved in Fe-S cluster assembly permease; InterPro IPR000825: IPR010231; KEGG: plm:Plim_2390 FeS assembly protein SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_004270963.1 COGs: COG0396 ABC-type transporter involved in Fe-S cluster assembly ATPase component; InterPro IPR003593: IPR003439: IPR010230; KEGG: plm:Plim_2389 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: FeS assembly ATPase SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004270964.1 COGs: COG2345 transcriptional regulator protein; InterPro IPR005149; KEGG: plm:Plim_2387 transcriptional regulator protein-like protein; PFAM: transcription regulator PadR N-terminal-like; SPTR: uncharacterized protein; PFAM: transcriptional regulator PadR-like family YP_004270965.1 COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: caa:Caka_0244 sodium:neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter; SPTR: transporter; PFAM: Sodium:neurotransmitter symporter family YP_004270966.1 KEGG: caa:Caka_0243 hypothetical protein; SPTR: uncharacterized protein YP_004270967.1 KEGG: psl:Psta_3030 hypothetical protein; SPTR: uncharacterized protein YP_004270968.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: tgr:Tgr7_1732 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavine resistance protein (Cation efflux system); PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_004270969.1 KEGG: plm:Plim_1433 hypothetical protein; SPTR: uncharacterized protein YP_004270970.1 COGs: COG0845 membrane-fusion protein; InterPro IPR006143; KEGG: dak:DaAHT2_2148 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter MFP subunit YP_004270971.1 InterPro IPR006148; KEGG: plm:Plim_2730 glucosamine/galactosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: glucosamine-6-phosphate isomerase, ; PFAM: glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YP_004270972.1 KEGG: plm:Plim_0264 hypothetical protein; SPTR: uncharacterized protein YP_004270973.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713: IPR013221: IPR004101: IPR005863; KEGG: plm:Plim_0680 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D -alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004270974.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713: IPR013221: IPR004101: IPR005761; KEGG: plm:Plim_0681 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Luciferase-like monooxygenase; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004270975.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: psl:Psta_4361 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1; SPTR: alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004270976.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: psl:Psta_4360 luciferase-like monooxygenase; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like monooxygenase; PFAM: Luciferase-like monooxygenase YP_004270977.1 KEGG: plm:Plim_2456 hypothetical protein; SPTR: uncharacterized protein YP_004270978.1 KEGG: psl:Psta_2567 signal peptide and transmembrane protein; SPTR: uncharacterized protein; PFAM: Trehalose utilisation YP_004270979.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: glucose-inhibited division protein A; InterPro IPR002218: IPR004416; KEGG: plm:Plim_2536 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: glucose-inhibited division protein A; PFAM: glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_004270980.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: plm:Plim_4188 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004270981.1 InterPro IPR013740; KEGG: plm:Plim_0596 redoxin domain protein; PFAM: Redoxin; SPTR: Probable FixW protein; PFAM: AhpC/TSA family YP_004270982.1 InterPro IPR000866; KEGG: psl:Psta_2862 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; AhpC/TSA family YP_004270983.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: bid:Bind_2061 membrane transporter; SPTR: Possible RND Superfamily transporter; PFAM: MMPL family YP_004270984.1 COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: afw:Anae109_2891 excinuclease ABC subunit C; PFAM: excinuclease ABC, C subunit, N-terminal; SPTR: excinuclease ABC C subunit domain protein; PFAM: GIY-YIG catalytic domain YP_004270985.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: gtn:GTNG_2017 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_004270986.1 COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; KEGG: rba:RB1356 N-acetylglucosamine-6-phosphate deacetylase NagA; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase NAGA; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_004270987.1 COGs: COG0363 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: psl:Psta_2168 glucosamine-6-phosphate deaminase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; PRIAM: glucosamine-6-phosphate deaminase; SPTR: glucosamine-6-phosphate isomerase NAGB; PFAM: glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_004270988.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004270989.1 KEGG: sse:Ssed_3666 monovalent cation/H+ antiporter subunit D; SPTR: uncharacterized protein YP_004270990.1 InterPro IPR001173; KEGG: geo:Geob_1481 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004270991.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4179 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; PFAM: Sulfatase YP_004270992.1 KEGG: bac:BamMC406_5917 glycosyl hydrolase BNR repeat-containing glycosyl hydrolase; SPTR: glycosyl hydrolase, BNR repeat-containing protein YP_004270993.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transporters permeases; InterPro IPR001851; KEGG: rba:RB1074 ribose transporter permease; PFAM: Bacterial inner-membrane translocator; SPTR: ribose transporter permease protein; PFAM: Branched-chain amino acid transporter / permease component YP_004270994.1 KEGG: plm:Plim_2189 hypothetical protein; SPTR: uncharacterized protein YP_004270995.1 COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: plm:Plim_2190 segregation and condensation protein B; PFAM: chromosome segregation/condensation protein ScpB, prokaryote; SPTR: uncharacterized protein; TIGRFAM: chromosome segregation/condensation protein ScpB, prokaryote; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_004270996.1 COGs: COG0131 imidazoleglycerol-phosphate dehydratase; HAMAP: imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: plm:Plim_3413 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: imidazoleglycerol-phosphate dehydratase; SPTR: imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_004270997.1 KEGG: nde:NIDE2486 hypothetical protein; SPTR: uncharacterized protein YP_004270998.1 KEGG: plm:Plim_0781 hypothetical protein; SPTR: methylaspartate mutase; TIGRFAM: conserved hypothetical protein YP_004270999.1 KEGG: plm:Plim_1985 hypothetical protein; SPTR: uncharacterized protein YP_004271000.1 KEGG: plm:Plim_1984 hypothetical protein; SPTR: uncharacterized protein YP_004271001.1 KEGG: plm:Plim_1983 hypothetical protein; SPTR: uncharacterized protein YP_004271002.1 KEGG: plm:Plim_3797 hypothetical protein; SPTR: uncharacterized protein YP_004271003.1 KEGG: plm:Plim_3798 hypothetical protein; SPTR: uncharacterized protein YP_004271004.1 InterPro IPR015414; KEGG: psl:Psta_2494 SNARE associated Golgi protein-like protein; PFAM: SNARE associated Golgi protein; SPTR: 3-dehydroquinate synthase domain protein; PFAM: SNARE associated Golgi protein YP_004271005.1 KEGG: plm:Plim_1576 hypothetical protein; SPTR: uncharacterized protein YP_004271006.1 InterPro IPR010496; KEGG: psl:Psta_1366 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004271007.1 COGs: COG0023 translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: rba:RB10327 protein translation factor SUI1-like protein; PFAM: translation initiation factor SUI1; SPTR: uncharacterized protein; PFAM: translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic YP_004271008.1 InterPro IPR013217; KEGG: rha:RHA1_ro00217 hypothetical protein; PFAM: methyltransferase type 12; SPTR: methyltransferase type 11; PFAM: thiopurine S-methyltransferase (TPMT) YP_004271009.1 COGs: COG3880 Uncharacterized protein with conserved CXXC pairs; InterPro IPR001943; KEGG: plm:Plim_0762 UvrB/UvrC protein; PFAM: UvrB/UvrC protein; SPTR: uncharacterized protein; PFAM: UvrB/uvrC motif YP_004271010.1 COGs: COG1437 adenylate cyclase class 2 (thermophilic); InterPro IPR008172: IPR008173; KEGG: psl:Psta_0158 adenylyl cyclase CyaB; PFAM: adenylate cyclase; SPTR: adenylyl cyclase CyaB; TIGRFAM: adenylyl cyclase CyaB; PFAM: CYTH domain; TIGRFAM: adenylyl cyclase CyaB YP_004271011.1 COGs: COG3536 conserved hypothetical protein; KEGG: afw:Anae109_3805 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF971) YP_004271012.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; KEGG: plm:Plim_2434 5'-nucleotidase/2' 3'-cyclic phosphodiesterase-like esterase; SPTR: 5'-nucleotidase/2' 3'-cyclic phosphodiesterase-like esterase YP_004271013.1 InterPro IPR011467; KEGG: plm:Plim_2435 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1573) YP_004271014.1 InterPro IPR007016; KEGG: plm:Plim_2436 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: O-antigen ligase YP_004271015.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: plm:Plim_2437 glycosyl transferase family 4; PFAM: glycosyl transferase, family 4, conserved region; SPTR: undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 4 YP_004271016.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_4203 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); PFAM: Sulfatase YP_004271017.1 KEGG: mgr:MGG_02862 hypothetical protein; SPTR: peptidoglycan binding domain protein YP_004271019.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000253: IPR003018: IPR001932: IPR010822; KEGG: plm:Plim_2161 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; Forkhead-associated; GAF; SMART: protein phosphatase 2C-related; Forkhead-associated; GAF; SPTR: stage II sporulation E family protein; PFAM: GAF domain; stage II sporulation protein E (SpoIIE); FHA domain YP_004271020.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; KEGG: plm:Plim_3365 hypothetical protein; SPTR: uncharacterized protein YP_004271021.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR013976; KEGG: plm:Plim_2873 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; metal-dependent hydrolase HDOD; SMART: Diguanylate cyclase, predicted; SPTR: GGDEF domain-like protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; HDOD domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004271022.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: plm:Plim_2874 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain YP_004271023.1 COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: plm:Plim_2875 CheC domain protein; PFAM: CheC-like protein; SPTR: uncharacterized protein; PFAM: CheC-like family YP_004271024.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: plm:Plim_2876 response regulator receiver; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal; SPTR: Response regulator receiver; PFAM: Bacterial regulatory proteins, luxR family YP_004271026.1 COGs: COG3267 type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: psl:Psta_1516 ATPase AAA; SMART: ATPase, AAA+ type, core; SPTR: ATPase and membrane protein YP_004271027.1 KEGG: plm:Plim_3979 hypothetical protein; SPTR: uncharacterized protein YP_004271028.1 KEGG: plm:Plim_2337 hypothetical protein; SPTR: uncharacterized protein YP_004271029.1 KEGG: plm:Plim_2336 hypothetical protein; SPTR: uncharacterized protein YP_004271030.1 COGs: COG0631 serine/threonine protein phosphatase; InterPro IPR001932: IPR014045; KEGG: plm:Plim_2397 phosphoprotein phosphatase; PFAM: protein phosphatase 2C, N-terminal; SMART: protein phosphatase 2C-related; SPTR: protein phosphatase; PFAM: protein phosphatase 2C YP_004271031.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: psl:Psta_2844 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase YP_004271032.1 KEGG: plm:Plim_1836 hypothetical protein; SPTR: uncharacterized protein YP_004271033.1 KEGG: plm:Plim_1522 hypothetical protein; SPTR: uncharacterized protein YP_004271034.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_3518 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004271035.1 KEGG: plm:Plim_2042 hypothetical protein; SPTR: DNA topoisomerase I YP_004271036.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein, MutL; InterPro IPR003594: IPR013507: IPR014790: IPR020667: IPR 014763; KEGG: plm:Plim_1838 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: MutL C terminal dimerisation domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_004271037.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR011063: IPR012795; KEGG: plm:Plim_2018 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; SPTR: uncharacterized protein; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004271038.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2,3-cyclic-nucleotide 2-phosphodiesterase; InterPro IPR004087: IPR003607: IPR018111: IPR006674: IPR 017705: IPR006675; KEGG: plm:Plim_2017 YmdA/YtgF protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: YmdA/YtgF protein; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004271039.1 COGs: COG0147 anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890: IPR005256; KEGG: psl:Psta_3829 anthranilate synthase component I; PFAM: chorismate binding, C-terminal; anthranilate synthase component I, N-terminal; PRIAM: anthranilate synthase; SPTR: anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding enzyme; anthranilate synthase component I, N terminal region; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages YP_004271040.1 KEGG: plm:Plim_0872 hypothetical protein; SPTR: uncharacterized protein YP_004271041.1 COGs: COG0635 coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638: IPR007197: IPR010723: IPR004559; KEGG: psl:Psta_0038 oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_004271042.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: ribosomal protein S12 methylthiotransferase RimO; InterPro IPR006638: IPR013848: IPR007197: IPR005840: IPR 005839; KEGG: plm:Plim_0735 MiaB-like tRNA modifying enzyme YliG; PFAM: methylthiotransferase, N-terminal; radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; methylthiotransferase; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family YP_004271043.1 COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462: IPR004570; KEGG: plm:Plim_1537 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_004271044.1 COGs: COG1670 acetyltransferase including N-acetylase of ribosomal protein; KEGG: bpf:BpOF4_18210 hypothetical protein; SPTR: uncharacterized protein YP_004271045.1 KEGG: pvx:PVX_097000 hypothetical protein; SPTR: uncharacterized protein YP_004271046.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583: IPR001962: IPR006426; KEGG: psl:Psta_1424 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthetase [glutamine-hydrolyzing] 1; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004271047.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_1281 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase; PFAM: glycosyl transferases group 1 YP_004271048.1 InterPro IPR019734: IPR001440; KEGG: plm:Plim_2561 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004271049.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: plm:Plim_0049 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; SPTR: DNA processing chain A; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004271050.1 COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: plm:Plim_3455 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004271051.1 COGs: COG4260 virion core protein (lumpy skin disease virus); KEGG: rba:RB3221 hypothetical protein; SPTR: uncharacterized protein; PFAM: SPFH domain / Band 7 family YP_004271052.1 COGs: COG2379 glycerate kinase; InterPro IPR007835; KEGG: psl:Psta_0794 hydroxypyruvate reductase; PFAM: MOFRL; PRIAM: glycerate kinase; SPTR: uncharacterized protein; PFAM: MOFRL family YP_004271053.1 KEGG: plm:Plim_1401 hypothetical protein; SPTR: uncharacterized protein YP_004271054.1 KEGG: plm:Plim_0104 hypothetical protein; SPTR: uncharacterized protein YP_004271055.1 InterPro IPR007543; KEGG: plm:Plim_0103 hypothetical protein; PFAM: organic solvent tolerance protein, C-terminal; SPTR: uncharacterized protein YP_004271056.1 KEGG: cts:Ctha_0741 conserved hypothetical protein; signal peptide; SPTR: uncharacterized protein YP_004271057.1 COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); HAMAP: Holo-[acyl-carrier-protein] synthase; InterPro IPR008278: IPR002582: IPR004568; KEGG: psl:Psta_3536 holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-[acyl-carrier-protein] synthase; TIGRFAM: phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase YP_004271058.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: jan:Jann_3107 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004271059.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: bsu:BSU30750 manganese ABC transporter (permease); PFAM: ABC-3; SPTR: Manganese transporter membrane protein mntC; PFAM: ABC 3 transport family; TIGRFAM: Gram-positive signal peptide, YSIRK family YP_004271060.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR009042: IPR007627: IPR007624: IPR007630: IPR 014284; KEGG: plm:Plim_1616 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271061.1 KEGG: plm:Plim_2225 hypothetical protein; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004271062.1 COGs: COG1734 DnaK suppressor protein; InterPro IPR000962; KEGG: rba:RB5848 DnaK suppressor protein; SPTR: Probable DnaK suppressor protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger YP_004271063.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB2663 heparan N-sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; PFAM: Sulfatase YP_004271064.1 KEGG: plm:Plim_0211 hypothetical protein; SPTR: uncharacterized protein YP_004271065.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB605 arylsulfatase precursor; PFAM: Sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004271066.1 COGs: COG0550 Topoisomerase IA; InterPro IPR006154: IPR003601: IPR003602: IPR006171: IPR 013497: IPR005733; KEGG: plm:Plim_2200 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_004271068.1 KEGG: plm:Plim_2201 hypothetical protein; SPTR: uncharacterized protein YP_004271069.1 InterPro IPR000253; KEGG: plm:Plim_1735 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004271070.1 KEGG: scl:sce4452 DNA gyrase subunit B; SPTR: uncharacterized protein YP_004271071.1 KEGG: plm:Plim_2412 hypothetical protein; SPTR: uncharacterized protein YP_004271072.1 COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953; KEGG: psl:Psta_4245 FAD dependent oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Probable phytoene dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004271073.1 KEGG: rba:RB1588 acyl carrier protein; SPTR: uncharacterized protein; PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004271074.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031; KEGG: caa:Caka_1850 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain YP_004271075.1 InterPro IPR007167; KEGG: tko:TK0715 iron(II) transport protein A; PFAM: Ferrous iron transporter Feosubunit alpha; SPTR: uncharacterized protein; PFAM: FeoA domain YP_004271076.1 COGs: COG1918 Fe2+ transporter protein A; InterPro IPR007167; KEGG: psl:Psta_2394 FeoA family protein; PFAM: Ferrous iron transporter Feosubunit alpha; SPTR: Ferrous iron transporter A; PFAM: FeoA domain YP_004271077.1 COGs: COG0370 Fe2+ transporter protein B; InterPro IPR002917: IPR011619: IPR011642: IPR011640: IPR 005225: IPR003373; KEGG: plm:Plim_2698 ferrous iron transporter B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; nucleoside recognition; Ferrous iron transporter B, C-terminal; SPTR: Ferrous iron transporter B; TIGRFAM: Ferrous iron transporter B; Small GTP-binding protein; PFAM: Ferrous iron transporter B; Ferrous iron transporter B C terminus; nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004271078.1 KEGG: rsp:RSP_4114 periplasmic nitrate reductase maturation protein NapF; SPTR: Ferredoxin YP_004271079.1 COGs: COG2309 leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: toc:Toce_0841 peptidase M29 aminopeptidase II; PFAM: peptidase M29, aminopeptidase II; SPTR: peptidase M29, aminopeptidase II; PFAM: Thermophilic metalloprotease (M29) YP_004271080.1 COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: plm:Plim_3585 heat shock protein 70; PFAM: heat shock protein 70; SPTR: Dnak protein, truncation; PFAM: Hsp70 protein YP_004271081.1 InterPro IPR007831; KEGG: plm:Plim_3454 general secretory system II protein E domain protein; PFAM: general secretory system II, protein E, N-terminal; SPTR: type IV fimbrial assembly protein PilB; PFAM: GSPII_E N-terminal domain YP_004271082.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917: IPR000357; KEGG: rba:RB3177 sulfatase AtsG; PFAM: Sulfatase; HEAT; SPTR: Probable sulfatase atsG; PFAM: Sulfatase YP_004271083.1 COGs: COG1523 type II secretory pathway pullulanase PulA and related glycosidase; InterPro IPR006589: IPR004193: IPR006047; KEGG: rba:RB4894 glycogen operon protein GlgX-2; PFAM: glycosyl hydrolase, family 13, catalytic domain; glycoside hydrolase, family 13, N-terminal; PRIAM: Isoamylase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: glycogen operon protein glgX-2; PFAM: alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_004271084.1 KEGG: xcv:XCV4336 xylosidase precursor YP_004271085.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: plm:Plim_2512 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family YP_004271086.1 InterPro IPR008207; KEGG: plm:Plim_2510 Hpt domain protein; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SPTR: uncharacterized protein; PFAM: Hpt domain YP_004271087.1 KEGG: plm:Plim_2509 hypothetical protein; SPTR: uncharacterized protein YP_004271088.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: plm:Plim_2034 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(acyl-carrier protein) reductase; PFAM: short chain dehydrogenase YP_004271089.1 KEGG: rba:RB5184 signal peptide; SPTR: uncharacterized protein YP_004271090.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007693: IPR007694: IPR007692; KEGG: plm:Plim_2624 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004271091.1 COGs: COG0359 ribosomal protein L9; HAMAP: ribosomal protein L9, bacteria/chloroplast; InterPro IPR020070: IPR020069: IPR020594; KEGG: plm:Plim_2625 ribosomal protein L9; PFAM: ribosomal protein L9, C-terminal; ribosomal protein L9, N-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9, bacteria/chloroplast; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004271092.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: plm:Plim_2626 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004271093.1 KEGG: plm:Plim_2627 ribosomal protein S6; SPTR: 30S ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004271094.1 COGs: COG0193 peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: plm:Plim_2628 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004271095.1 COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); HAMAP: ribosomal protein L25; InterPro IPR020055: IPR001021; KEGG: plm:Plim_2629 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal protein L25; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004271096.1 KEGG: plm:Plim_0851 hypothetical protein; SPTR: uncharacterized protein YP_004271098.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173: IPR007267; KEGG: sat:SYN_02391 cell wall biogenesis glycosyltransferase; PFAM: glycosyl transferase, family 2; GtrA-like protein; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: glycosyltransferase involved in cell wall biogenesis; PFAM: GtrA-like protein; glycosyl transferase family 2 YP_004271099.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: plm:Plim_1827 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271100.1 InterPro IPR011444; KEGG: plm:Plim_1826 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004271101.1 KEGG: plm:Plim_1825 hypothetical protein; SPTR: uncharacterized protein YP_004271102.1 COGs: COG0136 aspartate-semialdehyde dehydrogenase; InterPro IPR000534: IPR012280: IPR005986; KEGG: plm:Plim_1776 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase, dimerisation domain; semialdehyde dehydrogenase, NAD-binding; PRIAM: aspartate-semialdehyde dehydrogenase; SPTR: aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase, bacterial; PFAM: semialdehyde dehydrogenase, dimerisation domain; semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004271103.1 COGs: COG0178 excinuclease ATPase; InterPro IPR003439; KEGG: rba:RB10876 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: excinuclease ABC subunit A; PFAM: ABC transporter; TIGRFAM: excinuclease ABC subunit A YP_004271104.1 COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: plm:Plim_1683 chromosome segregation and condensation protein ScpA; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; SPTR: uncharacterized protein; PFAM: ScpA/B protein YP_004271105.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: plm:Plim_1965 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004271106.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: psl:Psta_0475 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004271107.1 COGs: COG0415 deoxyribodipyrimidine photolyase; InterPro IPR006050: IPR005101; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; SPTR: deoxyribodipyrimidine photolyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase YP_004271108.1 COGs: COG0440 acetolactate synthase small (regulatory) subunit; InterPro IPR002912: IPR019455: IPR004789; KEGG: plm:Plim_1192 acetolactate synthase, small subunit; PFAM: acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; SPTR: acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit YP_004271109.1 COGs: COG0059 Ketol-acid reductoisomerase; HAMAP: Ketol-acid reductoisomerase; InterPro IPR013116: IPR000506: IPR013023; KEGG: plm:Plim_1193 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase, catalytic; acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: acetohydroxy acid isomeroreductase; PFAM: acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_004271110.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: plm:Plim_2876 response regulator receiver; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal; SPTR: Two component LuxR family transcriptional regulator protein; PFAM: Bacterial regulatory proteins, luxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271111.1 COGs: COG4566 Response regulator; InterPro IPR001789: IPR000792; KEGG: bja:bll2759 response regulator FixJ; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SPTR: transcriptional regulatory protein fixJ; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004271112.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR001610: IPR003594: IPR013656: IPR013655: IPR 000014; KEGG: psl:Psta_4289 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; PAS fold-3; SMART: ATPase-like, ATP-binding domain; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004271113.1 InterPro IPR000866: IPR018248; KEGG: plm:Plim_1556 redoxin domain protein; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; EF-Hand, Calmodulin; SPTR: uncharacterized protein; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; AhpC/TSA family YP_004271114.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094; KEGG: psl:Psta_2648 FAD linked oxidase; PFAM: FAD linked oxidase N-terminal; SPTR: FAD linked oxidase; PFAM: FAD binding domain YP_004271115.1 COGs: COG0129 dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: dihydroxy-acid dehydratase; InterPro IPR000581: IPR004404; KEGG: plm:Plim_3236 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: dihydroxy-acid dehydratase; SPTR: dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_004271116.1 COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: plm:Plim_2395 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_004271117.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: plm:Plim_2394 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel YP_004271118.1 COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR006169: IPR002917: IPR014100: IPR005225; KEGG: plm:Plim_4144 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain YP_004271119.1 KEGG: dal:Dalk_3087 hypothetical protein; SPTR: uncharacterized protein YP_004271120.1 KEGG: caa:Caka_0948 hypothetical protein; SPTR: uncharacterized protein YP_004271121.1 InterPro IPR007386; KEGG: plm:Plim_2424 protein of unknown function DUF447; PFAM: protein of unknown function DUF447; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF447) YP_004271122.1 COGs: COG1907 sugar kinase; InterPro IPR013750; KEGG: mca:MCA2861 GHMP family kinase; PFAM: GHMP kinase, C-terminal; SPTR: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinases C terminal; TIGRFAM: beta-RFAP synthase YP_004271123.1 COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593: IPR003959; KEGG: cyu:UCYN_10850 AAA+ family ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPase; PFAM: ATPase family associated with various cellular activities (AAA) YP_004271124.1 COGs: COG0169 shikimate 5-dehydrogenase; HAMAP: Dehydroquinase class I; InterPro IPR001381: IPR013708: IPR006151: IPR011342; KEGG: plm:Plim_1839 3-dehydroquinate dehydratase, type I; PFAM: Dehydroquinase class I; shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; PRIAM: 3-dehydroquinate dehydratase., shikimate dehydrogenase; SPTR: 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase; TIGRFAM: Quinate/shikimate 5-dehydrogenase; Dehydroquinase class I; PFAM: shikimate dehydrogenase substrate binding domain; type I 3-dehydroquinase; shikimate / quinate 5-dehydrogenase; TIGRFAM: 3-dehydroquinate dehydratase, type I; shikimate 5-dehydrogenase YP_004271125.1 COGs: COG0703 shikimate kinase; HAMAP: shikimate kinase; InterPro IPR000623; KEGG: rba:RB3471 shikimate kinase II; PFAM: shikimate kinase; PRIAM: shikimate kinase; SPTR: shikimate kinase; PFAM: shikimate kinase YP_004271126.1 InterPro IPR000045; KEGG: plm:Plim_1841 peptidase A24A domain protein; PFAM: peptidase A24A, prepilin type IV; SPTR: Probable type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: type IV leader peptidase family YP_004271127.1 COGs: COG0118 glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR000991: IPR010139; KEGG: gem:GM21_3797 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004271128.1 COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062: IPR006063; KEGG: plm:Plim_2080 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004271129.1 COGs: COG2172 anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: plm:Plim_2056 anti-sigma regulatory factor; PFAM: ATPase-like, ATP-binding domain; SPTR: anti-sigma regulatory factor; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004271130.1 COGs: COG2172 anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: plm:Plim_2056 anti-sigma regulatory factor; PFAM: ATPase-like, ATP-binding domain; SPTR: anti-sigma regulatory factor; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004271131.1 COGs: COG1366 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645: IPR003658; KEGG: plm:Plim_2057 anti-anti-sigma factor; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Probable anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor); TIGRFAM: anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004271132.1 KEGG: vvi:100263953 hypothetical protein LOC100263953; SPTR: uncharacterized protein YP_004271133.1 COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: psl:Psta_2820 hypothetical protein; PFAM: protein of unknown function DUF2183; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2183) YP_004271134.1 COGs: COG3622 hydroxypyruvate isomerase; InterPro IPR012307; KEGG: plm:Plim_1642 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004271135.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: psl:Psta_1544 aminotransferase class IV; PFAM: Aminotransferase, class IV; SPTR: Branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV YP_004271136.1 COGs: COG1716 FOG: FHA domain; InterPro IPR000253; KEGG: plm:Plim_4219 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004271137.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transporter; InterPro IPR001478: IPR011659: IPR007484; KEGG: rba:RB6120 TolB protein; PFAM: peptidase M28; WD40-like beta Propeller; SMART: PDZ/DHR/GLGF; SPTR: Probable TolB protein; PFAM: PA domain; WD40-like beta Propeller Repeat; peptidase family M28 YP_004271138.1 COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060: IPR017827; KEGG: plm:Plim_2245 squalene synthase HpnC; PFAM: Squalene/phytoene synthase; SPTR: Phytoene synthase-related protein; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase; TIGRFAM: squalene synthase HpnC YP_004271139.1 KEGG: plm:Plim_0645 hypothetical protein; SPTR: uncharacterized protein YP_004271140.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: psl:Psta_2870 peptidase M24; PFAM: peptidase M24, structural domain; SPTR: peptidase M24; PFAM: metallopeptidase family M24 YP_004271141.1 COGs: COG0289 dihydrodipicolinate reductase; HAMAP: dihydrodipicolinate reductase, bacterial/plant; InterPro IPR000846: IPR011770; KEGG: plm:Plim_3278 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: dihydrodipicolinate reductase; SPTR: dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; PFAM: dihydrodipicolinate reductase, N-terminus; dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_004271142.1 KEGG: der:Dere_GG14184 GG14184 gene product from transcript GG14184-RA; SPTR: GG14184 YP_004271143.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR000120: IPR004412; KEGG: plm:Plim_2281 glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: amidase; SPTR: glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, subunit alpha YP_004271144.1 KEGG: plm:Plim_1968 hypothetical protein; SPTR: uncharacterized protein YP_004271145.1 COGs: COG2234 aminopeptidase; InterPro IPR001478: IPR003137: IPR007484; KEGG: plm:Plim_3899 peptidase M28; PFAM: peptidase M28; Protease-associated PA; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: peptidase M28; PFAM: PA domain; PDZ domain (Also known as DHR or GLGF); peptidase family M28 YP_004271146.1 KEGG: psl:Psta_0548 hypothetical protein; SPTR: uncharacterized protein YP_004271147.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_1311 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004271148.1 COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR004155: IPR013542: IPR000357; KEGG: plm:Plim_3280 domain of unknown function DUF1730; PFAM: Domain of unknown function DUF1730; HEAT; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein YP_004271149.1 KEGG: ecf:ECH74115_3888 hypothetical protein; SPTR: uncharacterized protein YP_004271150.1 COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: plm:Plim_2170 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_004271151.1 COGs: COG0166 glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: psl:Psta_2907 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase YP_004271152.1 COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterPro IPR007696: IPR000432: IPR007695: IPR007860: IPR 007861: IPR005748; KEGG: plm:Plim_4057 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_004271153.1 KEGG: rba:RB85 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004271154.1 KEGG: plm:Plim_1621 hypothetical protein; SPTR: uncharacterized protein YP_004271155.1 COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: plm:Plim_3948 CinA domain protein; PFAM: CinA, C-terminal; SPTR: uncharacterized protein; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain YP_004271156.1 COGs: COG2008 threonine aldolase; InterPro IPR001597; KEGG: plm:Plim_2168 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: threonine aldolase; SPTR: threonine aldolase; PFAM: beta-eliminating lyase YP_004271157.1 InterPro IPR006553: IPR003590: IPR001611; KEGG: plm:Plim_3843 leucine-rich repeat, ribonuclease inhibitor subtype; PFAM: Leucine-rich repeat; SPTR: uncharacterized protein YP_004271158.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: plm:Plim_2857 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004271159.1 COGs: COG0060 isoleucyl-tRNA synthetase; InterPro IPR002300: IPR013155; KEGG: plm:Plim_2426 isoleucine--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: isoleucine--tRNA ligase; SPTR: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_004271160.1 COGs: COG0195 transcription elongation factor; InterPro IPR004087: IPR013735: IPR003029: IPR004044: IPR 010213; KEGG: plm:Plim_2559 transcription termination factor NusA; PFAM: transcription factor NusA, N-terminal; ribosomal protein S1, RNA binding domain; K Homology, type 2; SPTR: transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: KH domain; NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA YP_004271161.1 COGs: COG0532 translation initiation factor 2 (IF-2; GTPase); InterPro IPR006847: IPR000795: IPR004161: IPR000178: IPR 005225; KEGG: plm:Plim_2558 translation initiation factor IF-2; PFAM: protein synthesis factor, GTP-binding; translation initiation factor IF-2, N-terminal; translation elongation factor EFTu/EF1A, domain 2; SPTR: translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; translation-initiation factor 2; translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004271162.1 COGs: COG0858 ribosome-binding factor A; HAMAP: ribosome-binding factor A; InterPro IPR000238; KEGG: plm:Plim_2557 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004271163.1 KEGG: plm:Plim_2556 hypothetical protein; SPTR: uncharacterized protein YP_004271164.1 KEGG: brm:Bmur_2579 hypothetical protein; SPTR: uncharacterized protein YP_004271165.1 KEGG: hoh:Hoch_2099 hypothetical protein; SPTR: uncharacterized protein YP_004271166.1 InterPro IPR004843; KEGG: plm:Plim_0868 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004271167.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: plm:Plim_0030 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Probable phospholipase C-beta-2; PFAM: zinc ribbon domain YP_004271168.1 KEGG: hut:Huta_1856 hypothetical protein; SPTR: uncharacterized protein YP_004271169.1 COGs: COG4284 UDP-glucose pyrophosphorylase; InterPro IPR002618; KEGG: rba:RB6977 UDP-N-acetylhexosamine pyrophosphorylase; PFAM: UTP--glucose-1-phosphate uridylyltransferase; PRIAM: UDP-N-acetylglucosamine diphosphorylase; SPTR: UDP-N-acetylhexosamine pyrophosphorylase; PFAM: UTP--glucose-1-phosphate uridylyltransferase YP_004271170.1 KEGG: psl:Psta_2531 hypothetical protein; SPTR: IG hypothetical 18565; PFAM: DinB family YP_004271171.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154; KEGG: cyt:cce_0206 alcohol dehydrogenase; PFAM: alcohol dehydrogenase GroES-like; SPTR: uncharacterized protein; PFAM: alcohol dehydrogenase GroES-like domain YP_004271172.1 KEGG: plm:Plim_3885 O-antigen polymerase; SPTR: O-antigen polymerase family protein YP_004271173.1 COGs: COG2244 membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: plm:Plim_3669 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: membrane protein involved in the export of O-antigen and teichoic acid-like protein; PFAM: polysaccharide biosynthesis protein YP_004271174.1 COGs: COG5653 protein involved in cellulose biosynthesis (CelD); KEGG: plm:Plim_3884 hypothetical protein; SPTR: uncharacterized protein YP_004271175.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_3883 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004271176.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_3880 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyltransferase; PFAM: glycosyl transferases group 1 YP_004271177.1 COGs: COG0438 glycosyltransferase; KEGG: plm:Plim_3878 glycosyltransferase-like protein; SPTR: TPR/glycosyl transferase domain protein YP_004271178.1 KEGG: plm:Plim_3876 hypothetical protein; SPTR: uncharacterized protein YP_004271179.1 KEGG: plm:Plim_2797 hypothetical protein; SPTR: uncharacterized protein YP_004271180.1 COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR002912: IPR005260: IPR001341; KEGG: plm:Plim_1425 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; SPTR: Aspartokinase; TIGRFAM: aspartate kinase domain; aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_004271181.1 KEGG: rba:RB6415 ferredoxin; SPTR: Ferredoxin; PFAM: Domain of unknown function (DUF3470); 4Fe-4S binding domain YP_004271183.1 KEGG: rba:RB9828 transmembrane Mn(2+) transporter; SPTR: uncharacterized protein; PFAM: Natural resistance-associated macrophage protein YP_004271184.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: plm:Plim_4192 diacylglycerol kinase; PFAM: diacylglycerol kinase, catalytic domain; SPTR: uncharacterized protein; PFAM: diacylglycerol kinase catalytic domain YP_004271185.1 COGs: COG4146 symporter; InterPro IPR001734: IPR019900; KEGG: csa:Csal_1283 symporter YidK; PFAM: Sodium/solute symporter; SPTR: sodium/myo-inositol cotransporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter SSS family YP_004271186.1 COGs: COG1225 peroxiredoxin; InterPro IPR000866; KEGG: plm:Plim_1247 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_004271187.1 KEGG: psl:Psta_2208 hypothetical protein; SPTR: uncharacterized protein YP_004271188.1 KEGG: xca:xccb100_0897 serine/threonine protein kinase; SPTR: uncharacterized protein; PFAM: protein kinase domain YP_004271189.1 InterPro IPR008407; KEGG: dac:Daci_3748 branched-chain amino acid transport; PFAM: Branched-chain amino acid transport; SPTR: Branched-chain amino acid transport; PFAM: Branched-chain amino acid transporter (AzlD) YP_004271190.1 COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: sno:Snov_2352 AzlC family protein; PFAM: AzlC-like; SPTR: branched-chain amino acid transport protein AzlC; PFAM: AzlC protein YP_004271191.1 COGs: COG1671 conserved hypothetical protein; HAMAP: protein of unknown function DUF188; InterPro IPR003791; KEGG: amr:AM1_1179 YaiI/YqxD family protein; PFAM: protein of unknown function DUF188; SPTR: UPF0178 protein PM8797T_13735; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671 YP_004271192.1 COGs: COG3247 conserved hypothetical protein; KEGG: nmg:Nmag_2690 hypothetical protein; SPTR: uncharacterized protein YP_004271193.1 COGs: COG1038 pyruvate carboxylase; InterPro IPR005481: IPR005479: IPR005482: IPR000891: IPR 003379: IPR000089: IPR005930; KEGG: psl:Psta_2726 pyruvate carboxylase; PFAM: carboxylase, conserved domain; carbamoyl phosphate synthetase, large subunit, ATP-binding; carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; pyruvate carboxyltransferase; Biotin/lipoyl attachment; PRIAM: pyruvate carboxylase; SPTR: pyruvate carboxylase; TIGRFAM: pyruvate carboxylase; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; HMGL-like; carbamoyl-phosphate synthase L chain, N-terminal domain; Conserved carboxylase domain; Biotin-requiring enzyme; TIGRFAM: pyruvate carboxylase YP_004271194.1 KEGG: rba:RB8085 hypothetical protein; SPTR: uncharacterized protein YP_004271195.1 InterPro IPR010496; KEGG: psl:Psta_2463 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004271196.1 KEGG: plm:Plim_1299 hypothetical protein; SPTR: uncharacterized protein YP_004271197.1 KEGG: aba:acid345_1764 membrane protein; SPTR: membrane protein YP_004271198.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR001789: IPR003661: IPR003594; KEGG: rba:RB8873 sensory transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: sensory transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004271199.1 InterPro IPR001789; KEGG: ava:Ava_1004 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain YP_004271200.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003018: IPR003661: IPR003594: IPR013654: IPR 013515; KEGG: ava:Ava_1003 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; GAF; PAS fold-2; Phytochrome, central region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Multi-sensor Signal transduction histidine Kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Phytochrome region; His Kinase A (phosphoacceptor) domain; PAS fold YP_004271201.1 COGs: COG3230 Heme oxygenase; InterPro IPR016053; KEGG: dra:DR_A0051 heme oxygenase; PFAM: Haem oxygenase-like; SPTR: Bacteriophytochrome heme oxygenase; PFAM: Heme oxygenase YP_004271202.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: rba:RB5055 ABC transporter ATP-binding protein uup-1; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004271203.1 COGs: COG2206 HD-GYP domain; KEGG: plm:Plim_0563 metal-dependent phosphohydrolase HD sub domain protein; SPTR: uncharacterized protein YP_004271204.1 COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192: IPR008279: IPR000121: IPR010121; KEGG: plm:Plim_2420 pyruvate, phosphate dikinase; PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: pyruvate, phosphate dikinase; SPTR: pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_004271205.1 COGs: COG4301 conserved hypothetical protein; InterPro IPR019257: IPR017804; KEGG: noc:Noc_2028 hypothetical protein; PFAM: protein of unknown function DUF2260; SPTR: uncharacterized protein; TIGRFAM: methyltransferase-like; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase YP_004271206.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532: IPR017806; KEGG: bpt:Bpet2716 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: conserved hypothetical protein TIGR03440 YP_004271207.1 COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transporter (osmoprotectant binding protein); InterPro IPR007210: IPR000515; KEGG: mxa:MXAN_0597 glycine betaine/L-proline ABC transporter permease and substrate-binding protein; PFAM: ABC-type glycine betaine transporter, substrate-binding domain; Binding-protein-dependent transporters inner membrane component; SPTR: glycine betaine/L-proline ABC transporter permease and substrate-binding protein; PFAM: Binding-protein-dependent transporter inner membrane component; substrate binding domain of ABC-type glycine betaine transporter YP_004271208.1 COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: mxa:MXAN_0596 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004271209.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: sfu:Sfum_3504 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase subunit C; SPTR: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C YP_004271210.1 KEGG: plm:Plim_2279 ribosomal protein L28; SPTR: 50S ribosomal protein L28 YP_004271211.1 InterPro IPR003751; KEGG: plm:Plim_2278 carbon storage regulator; PFAM: carbon storage regulator; SPTR: carbon storage regulator, CsrA; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_004271212.1 KEGG: gym:GYMC10_4860 coagulation factor 5/8 type domain protein; SPTR: uncharacterized protein YP_004271213.1 COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: oih:OB0802 hypothetical protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase YP_004271214.1 InterPro IPR010869; KEGG: rba:RB10053 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271215.1 InterPro IPR006558: IPR011444; KEGG: dfe:Dfer_1334 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SMART: LamG-like jellyroll fold; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004271216.1 COGs: COG4977 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR013656: IPR000005; KEGG: rba:RB2684 transcription regulator; PFAM: PAS fold-4; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; PAS fold; TIGRFAM: PAS domain S-box YP_004271217.1 KEGG: plm:Plim_1832 hypothetical protein; SPTR: uncharacterized protein YP_004271218.1 KEGG: plm:Plim_1833 hypothetical protein; SPTR: uncharacterized protein YP_004271219.1 InterPro IPR002898; KEGG: plm:Plim_1834 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable biopolymer transporter; PFAM: MotA/TolQ/ExbB proton channel family YP_004271220.1 COGs: COG1297 membrane protein; InterPro IPR004813; KEGG: hoh:Hoch_5004 oligopeptide transporter OPT superfamily; PFAM: oligopeptide transporter OPT superfamily; SPTR: oligopeptide transporter OPT superfamily; TIGRFAM: oligopeptide transporter OPT superfamily; PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter OPT family YP_004271221.1 COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: rba:RB11150 xenobiotic reductase B; PFAM: NADH:flavin oxidoreductase/NADH oxidase N-terminal; PRIAM: 12-oxophytodienoate reductase; SPTR: Xenobiotic reductase B; PFAM: NADH:flavin oxidoreductase / NADH oxidase family YP_004271222.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: npu:Npun_F2497 alcohol dehydrogenase; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: alcohol dehydrogenase, zinc-binding domain protein; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004271223.1 KEGG: ctu:Ctu_1p00180 hypothetical protein; SPTR: uncharacterized protein YP_004271224.1 KEGG: clu:CLUG_03979 hypothetical protein; SPTR: uncharacterized protein YP_004271225.1 COGs: COG3220 conserved hypothetical protein; InterPro IPR007801; KEGG: swi:Swit_4400 hypothetical protein; PFAM: protein of unknown function DUF692; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF692) YP_004271226.1 KEGG: ang:An01g08900 hypothetical protein; SPTR: Contig An01c0300, complete genome YP_004271227.1 COGs: COG0590 cytosine/adenosine deaminase; InterPro IPR002125; KEGG: psl:Psta_4112 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004271228.1 KEGG: psl:Psta_3386 hypothetical protein; SPTR: uncharacterized protein YP_004271229.1 COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; KEGG: ppu:PP_1106 RNA processing exonuclease; SPTR: uncharacterized protein YP_004271230.1 COGs: COG1793 ATP-dependent DNA ligase; InterPro IPR012310: IPR012309; KEGG: gau:GAU_3403 ATP-dependent DNA ligase; PFAM: ATP dependent DNA ligase, central; ATP dependent DNA ligase, C-terminal; SPTR: ATP-dependent DNA ligase; PFAM: ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal region YP_004271231.1 COGs: COG1201 Lhr-like helicase; InterPro IPR014001: IPR001650: IPR011545: IPR013701; KEGG: plm:Plim_3000 DEAD/H associated domain protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/H associated domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase YP_004271232.1 COGs: COG1407 ICC-like phosphoesterase; InterPro IPR004843; KEGG: plm:Plim_0355 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: metallophosphoesterase YP_004271233.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789: IPR003607: IPR006674; KEGG: plm:Plim_0679 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD subdomain; SMART: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD domain; SPTR: Response regulator receiver; PFAM: HD domain; Response regulator receiver domain YP_004271234.1 COGs: COG0004 Ammonia permease; InterPro IPR000014: IPR003661: IPR003594: IPR001789: IPR 008207: IPR001905: IPR013767; KEGG: psl:Psta_0819 multi-sensor hybrid histidine kinase; PFAM: Ammonium transporter; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SPTR: Ammonium/methylammonium permease; TIGRFAM: Ammonium transporter; PAS; PFAM: Ammonium transporter Family; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box; ammonium transporter YP_004271235.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: plm:Plim_0471 secretion protein HlyD; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein YP_004271236.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: psl:Psta_1006 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004271237.1 InterPro IPR003838; KEGG: plm:Plim_0469 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004271238.1 InterPro IPR001647: IPR015292; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; PFAM: transcription regulator YbiH, C-terminal; transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Probable transcriptional regulator; PFAM: Domain of unknown function (DUF1956); Bacterial regulatory proteins, tetR family YP_004271239.1 COGs: COG4717 conserved hypothetical protein; KEGG: pph:Ppha_1459 SMC domain protein; SPTR: uncharacterized protein YP_004271240.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004843; KEGG: scl:sce7166 DNA repair exonuclease family protein; PFAM: metallophosphoesterase; SPTR: exonuclease; PFAM: Calcineurin-like phosphoesterase YP_004271241.1 KEGG: tai:Taci_0592 transcriptional regulator, GntR family; SPTR: uncharacterized protein YP_004271242.1 KEGG: plm:Plim_0670 hypothetical protein; SPTR: uncharacterized protein YP_004271243.1 COGs: COG3696 silver efflux pump; InterPro IPR001036: IPR004763; KEGG: plm:Plim_0669 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_004271244.1 KEGG: plm:Plim_0668 hypothetical protein; SPTR: uncharacterized protein YP_004271245.1 InterPro IPR001258; KEGG: sus:acid_1144 NHL repeat-containing protein; PFAM: NHL repeat; SPTR: serine/threonine protein kinase; PFAM: NHL repeat YP_004271246.1 InterPro IPR013517; KEGG: rba:RB5763 signal peptide; PFAM: FG-GAP; SPTR: uncharacterized protein; PFAM: FG-GAP repeat YP_004271247.1 KEGG: spu:758138 hypothetical protein LOC758138; SPTR: Proteophosphoglycan 5 YP_004271248.1 KEGG: gme:Gmet_0588 hypothetical protein; SPTR: hypothetical protein YP_004271249.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: plm:Plim_1812 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004271250.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: cyc:PCC7424_1662 UspA domain protein; PFAM: UspA; SPTR: Universal stress protein family; PFAM: Universal stress protein family YP_004271251.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002197; KEGG: plm:Plim_3692 helix-turn-helix fis-type; PFAM: Helix-turn-helix, Fis-type; SPTR: transcriptional regulator; PFAM: Bacterial regulatory protein, Fis family; PAS fold YP_004271252.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845: IPR011268: IPR011270; KEGG: psl:Psta_3240 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; inosine guanosine/xanthosine phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_004271253.1 COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: bba:Bd2219 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: uncharacterized protein; PFAM: protein of unknown function, DUF393 YP_004271254.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pat:Patl_2695 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; PFAM: Sulfatase YP_004271255.1 KEGG: plm:Plim_1843 hypothetical protein; SPTR: uncharacterized protein YP_004271256.1 InterPro IPR003347; KEGG: plm:Plim_1842 transcription factor jumonji/aspartyl beta-hydroxylase; SMART: transcription factor jumonji/aspartyl beta-hydroxylase; SPTR: transcription factor jumonji/aspartyl beta-hydroxylase; PFAM: Cupin superfamily protein YP_004271257.1 COGs: COG0102 ribosomal protein L13; InterPro IPR005822: IPR005823; KEGG: plm:Plim_2877 ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; manually curated; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004271258.1 COGs: COG0103 ribosomal protein S9; InterPro IPR000754; KEGG: plm:Plim_2878 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16 YP_004271259.1 COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668: IPR000644: IPR006667: IPR006669; KEGG: plm:Plim_2879 magnesium transporter; PFAM: Magnesium transporter MgtE intracellular domain; cystathionine beta-synthase, core; MgtE magnesium transporter integral membrane region; SPTR: Mg2+ transporter; TIGRFAM: Divalent cation transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE) YP_004271260.1 COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003660: IPR013656: IPR003661: IPR003594: IPR 000014; KEGG: plm:Plim_1491 PAS sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004271261.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1; PFAM: glycosyl transferases group 1 YP_004271262.1 COGs: COG1879 ABC-type sugar transporter periplasmic component; InterPro IPR001761; KEGG: rba:RB7314 bifunctional carbohydrate binding and transporter; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: Bifunctional carbohydrate binding and transporter; PFAM: family YP_004271263.1 InterPro IPR002104; KEGG: tdn:Suden_0959 phage integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family YP_004271264.1 KEGG: apv:Apar_0728 small GTP-binding protein; SPTR: Amidohydrolase YP_004271265.1 SPTR: Signal recognition particle GTPase YP_004271266.1 InterPro IPR010090; KEGG: cbb:CLD_2068 phage related protein; PFAM: Phage tail tape measure protein TP901, core region; SPTR: Phage-related tail protein; PFAM: Phage-related minor tail protein YP_004271267.1 KEGG: tps:THAPSDRAFT_23770 hypothetical protein YP_004271268.1 KEGG: rsq:Rsph17025_0137 peptidase U35, phage prohead HK97; SPTR: uncharacterized protein; PFAM: Mu-like prophage major head subunit gpT YP_004271269.1 KEGG: tbr:Tb10.6k15.1730 hypothetical protein; SPTR: uncharacterized protein YP_004271270.1 COGs: COG3378 ATPase; InterPro IPR014818: IPR006500; KEGG: dae:Dtox_3701 P4 family phage/plasmid primase; PFAM: Phage/plasmid primase, P4, C-terminal; SPTR: Phage/plasmid primase, P4 family; TIGRFAM: DNA primase, phage/plasmid; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain YP_004271271.1 KEGG: mlo:mlr6323 resolvase; SPTR: resolvase YP_004271272.1 KEGG: ele:Elen_1496 hypothetical protein; SPTR: Excisionase family DNA binding domain-containing protein; TIGRFAM: DNA binding domain, excisionase family YP_004271273.1 KEGG: psl:Psta_1226 ABC transporter; SPTR: glutamic acid-rich protein YP_004271274.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ava:Ava_4780 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004271275.1 InterPro IPR011444; KEGG: psl:Psta_3533 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004271276.1 KEGG: psl:Psta_3531 peptidase domain protein; SPTR: Probable serine proteinase, subtilase family YP_004271277.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: psl:Psta_3530 planctomycete cytochrome C; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: hypothetical protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C YP_004271279.1 KEGG: plm:Plim_2920 hypothetical protein; SPTR: uncharacterized protein YP_004271280.1 KEGG: plm:Plim_2472 hypothetical protein; SPTR: uncharacterized protein YP_004271281.1 KEGG: plm:Plim_0504 hypothetical protein; SPTR: uncharacterized protein YP_004271282.1 COGs: COG0132 Dethiobiotin synthetase; HAMAP: Dethiobiotin synthase; InterPro IPR004472; KEGG: plm:Plim_0526 dethiobiotin synthase; PRIAM: Dethiobiotin synthase; SPTR: Dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase YP_004271283.1 COGs: COG1960 acyl-CoA dehydrogenase; KEGG: psl:Psta_0990 isovaleryl-CoA dehydrogenase protein; SPTR: uncharacterized protein YP_004271284.1 InterPro IPR001478; KEGG: plm:Plim_0166 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Protease Do; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004271285.1 COGs: COG0563 adenylate kinase and related kinase; HAMAP: adenylate kinase; InterPro IPR000850: IPR007862: IPR006259; KEGG: plm:Plim_2965 adenylate kinase; PFAM: adenylate kinase; adenylate kinase, active site lid domain; SPTR: adenylate kinase; TIGRFAM: adenylate kinase, subfamily; PFAM: adenylate kinase, active site lid; adenylate kinase; TIGRFAM: adenylate kinases YP_004271286.1 COGs: COG0710 3-dehydroquinate dehydratase; InterPro IPR001381; KEGG: plm:Plim_1543 3-dehydroquinate dehydratase-like protein; PFAM: Dehydroquinase class I; SPTR: 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase; PFAM: type I 3-dehydroquinase; shikimate / quinate 5-dehydrogenase; TIGRFAM: 3-dehydroquinate dehydratase, type I YP_004271287.1 InterPro IPR000620; KEGG: psl:Psta_2765 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004271288.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143: IPR003142: IPR004408; KEGG: psl:Psta_2727 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; SPTR: Biotin [acetyl-CoA-carboxylase] ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004271289.1 InterPro IPR002035: IPR011933; KEGG: rba:RB500 signal peptide; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: uncharacterized protein; TIGRFAM: Double transmembrane domain; PFAM: von Willebrand factor A domain; Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain YP_004271290.1 KEGG: bfo:BRAFLDRAFT_86969 hypothetical protein; SPTR: uncharacterized protein YP_004271291.1 KEGG: sro:Sros_0572 thiol-disulfide isomerase and thioredoxins-like protein; SPTR: thiol-disulfide isomerase and thioredoxins-like protein YP_004271292.1 KEGG: plm:Plim_3892 hypothetical protein; SPTR: uncharacterized protein YP_004271293.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: plm:Plim_0700 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor sigW; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271294.1 KEGG: cag:Cagg_0420 major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1 YP_004271295.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: plm:Plim_3300 exporter of the RND superfamily protein-like protein; SPTR: Probable integral membrane protein; PFAM: MMPL family YP_004271296.1 InterPro IPR020818; KEGG: plm:Plim_2732 chaperonin Cpn10; PFAM: chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: chaperonin 10 Kd subunit YP_004271297.1 KEGG: plm:Plim_0208 hypothetical protein; SPTR: uncharacterized protein YP_004271298.1 KEGG: plm:Plim_3936 hypothetical protein; SPTR: uncharacterized protein YP_004271299.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sfu:Sfum_2499 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004271300.1 InterPro IPR010093; KEGG: ahe:Arch_0315 DNA binding domain protein, excisionase family; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase family YP_004271301.1 KEGG: mgl:MGL_4112 hypothetical protein; SPTR: uncharacterized protein YP_004271302.1 COGs: COG0790 FOG: TPR repeat SEL1 subfamily; InterPro IPR006597; KEGG: cli:Clim_1310 Sel1 domain protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like; SPTR: uncharacterized protein; PFAM: Sel1 repeat YP_004271303.1 COGs: COG2826 transposase and inactivated derivatives IS30 family; InterPro IPR001584; KEGG: hha:Hhal_1276 integrase catalytic subunit; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region; PFAM: Integrase core domain YP_004271304.1 KEGG: gga:428899 similar to chromosome 14 open reading frame 145; SPTR: uncharacterized protein YP_004271305.1 KEGG: aci:ACIAD2142 hypothetical protein; SPTR: uncharacterized protein YP_004271306.1 KEGG: xtr:549686 transmembrane protein 127; SPTR: uncharacterized protein YP_004271307.1 InterPro IPR004155; KEGG: ana:alr1903 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Alr1903 protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat YP_004271308.1 InterPro IPR004843; KEGG: mgm:Mmc1_2000 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Ser/Thr protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase YP_004271310.1 InterPro IPR008775; KEGG: pti:PHATRDRAFT_37164 hypothetical protein; PFAM: phytanoyl-CoA dioxygenase; SPTR: Predicted protein; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004271311.1 COGs: COG4403 Lantibiotic modifying protein; InterPro IPR007822; KEGG: cyn:Cyan7425_3979 lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like; SPTR: Lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like protein YP_004271312.1 InterPro IPR008775; KEGG: sna:Snas_3564 hypothetical protein; PFAM: phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004271313.1 KEGG: npu:Npun_AF077 hypothetical protein; SPTR: uncharacterized protein YP_004271314.1 KEGG: mcc:704898 delta-like 4 (Drosophila); SPTR: cDNA, FLJ94455, highly similar to Homo sapiens delta-like 4 (Drosophila) (DLL4), mRNA YP_004271315.1 KEGG: ana:alr0761 hypothetical protein; SPTR: uncharacterized protein YP_004271316.1 KEGG: tel:tlr2085 hypothetical protein YP_004271317.1 InterPro IPR011600; KEGG: mlo:mlr3300 hypothetical protein; PFAM: peptidase C14, caspase catalytic; SPTR: Mlr3300 protein; PFAM: Caspase domain YP_004271318.1 KEGG: sro:Sros_6227 WD40 repeat-domain-containing protein-like protein; SPTR: WD40 repeat-domain-containing protein-like protein YP_004271319.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254; KEGG: amr:AM1_6328 trypsin-like serine protease; PFAM: peptidase S1/S6, chymotrypsin/Hap; SPTR: Bacterial pre-peptidase C-terminal domain family; PFAM: Trypsin YP_004271320.1 COGs: COG4995 conserved hypothetical protein; InterPro IPR001440: IPR001478: IPR019734; KEGG: gvi:glr1061 kinesin light chain; PFAM: PDZ/DHR/GLGF; Tetratricopeptide TPR-1; SMART: PDZ/DHR/GLGF; Tetratricopeptide repeat; SPTR: Kinesin light chain-like protein; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004271321.1 InterPro IPR014284; KEGG: pen:PSEEN3796 flagellar biosynthesis sigma factor; SPTR: RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271322.1 KEGG: olu:OSTLU_87761 predicted protein; SPTR: uncharacterized protein YP_004271323.1 KEGG: app:CAP2UW1_2199 CRISPR-associated RAMP protein, Cmr6 family; SPTR: large Ala/Glu-rich protein YP_004271324.1 KEGG: bcr:BCAH187_A3227 hypothetical protein; SPTR: uncharacterized protein YP_004271325.1 KEGG: dre:557772 si:ch211-250g4.3; SPTR: uncharacterized protein YP_004271326.1 COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR011600; KEGG: gvi:glr2244 WD repeat-containing protein; PFAM: peptidase C14, caspase catalytic; SPTR: WD-repeat protein; PFAM: Caspase domain YP_004271327.1 KEGG: geo:Geob_1511 hypothetical protein; SPTR: uncharacterized protein YP_004271328.1 InterPro IPR014860; KEGG: rba:RB6282 hypothetical protein; PFAM: protein of unknown function DUF1790; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF1790) YP_004271329.1 COGs: COG4995 conserved hypothetical protein; InterPro IPR019734: IPR001478; KEGG: npu:Npun_AF084 TPR repeat-containing protein; SMART: PDZ/DHR/GLGF; Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004271331.1 InterPro IPR001440: IPR019734; KEGG: hau:Haur_5149 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: Kinesin light chain-like protein YP_004271332.1 COGs: COG4995 conserved hypothetical protein; InterPro IPR001478; KEGG: hau:Haur_1707 hypothetical protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Tetratricopeptide TPR_3; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004271333.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478: IPR011782; KEGG: tye:THEYE_A0072 MucD; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Similar to heat shock protease DegP/HtrA; TIGRFAM: peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease Do/DeqQ family YP_004271334.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: abi:Aboo_0112 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: thiamine biosynthesis protein ThiF; PFAM: ThiF family YP_004271335.1 KEGG: osa:4343464 hypothetical protein; SPTR: uncharacterized protein YP_004271336.1 KEGG: ngr:NAEGRDRAFT_73733 hypothetical protein; SPTR: uncharacterized protein YP_004271337.1 KEGG: dge:Dgeo_0329 molybdopterin converting factor, subunit 1; SPTR: uncharacterized protein YP_004271338.1 KEGG: psl:Psta_3410 hypothetical protein; SPTR: uncharacterized protein YP_004271339.1 KEGG: afl:Aflv_1574 membrane protease subunit, stomatin/prohibitin YP_004271340.1 InterPro IPR001387; KEGG: pjd:Pjdr2_1921 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Restriction-modification system regulatory protein, ; PFAM: Helix-turn-helix YP_004271341.1 KEGG: cti:RALTA_A2476 methyltransferase, methylase of polypeptide chain release factors; SPTR: uncharacterized protein YP_004271342.1 KEGG: psl:Psta_3719 hypothetical protein; SPTR: uncharacterized protein; PFAM: Resolvase, N terminal domain YP_004271343.1 KEGG: dal:Dalk_3255 4-amino-4-deoxy-L-arabinose transferase; SPTR: Tetratricopeptide repeat protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004271344.1 KEGG: pfr:PFREUD_03800 hypothetical outer membrane protein; SPTR: Sialic acid-specific 9-O-acetylesterase YP_004271345.1 InterPro IPR012902; KEGG: psl:Psta_2114 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271346.1 InterPro IPR003088: IPR013428: IPR013427; KEGG: rba:RB3322 cytochrome C; PFAM: cytochrome C, class I; SPTR: uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004271347.1 KEGG: bth:BT_3310 hypothetical protein; SPTR: uncharacterized protein YP_004271348.1 COGs: COG4242 Cyanophycinase and related exopeptidase; InterPro IPR005320: IPR011811; KEGG: plm:Plim_2775 cyanophycinase; PFAM: peptidase S51, dipeptidase E; SPTR: Cyanophycinase; TIGRFAM: Cyanophycinase; PFAM: peptidase family S51; TIGRFAM: cyanophycinase YP_004271349.1 KEGG: nmu:Nmul_A2201 hypothetical protein; SPTR: uncharacterized protein YP_004271350.1 KEGG: nmu:Nmul_A2202 hypothetical protein; SPTR: uncharacterized protein YP_004271351.1 COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: plm:Plim_1781 Zn-dependent aminopeptidase; PFAM: peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Zn-dependent aminopeptidase; PFAM: peptidase family M1 YP_004271352.1 COGs: COG4826 serine protease inhibitor; InterPro IPR000215; KEGG: dtu:Dtur_1669 non-specific serine/threonine protein kinase; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: proteinase inhibitor I4 serpin; PFAM: Serpin (serine protease inhibitor) YP_004271353.1 InterPro IPR011600; KEGG: rba:RB4272 hypothetical protein; PFAM: peptidase C14, caspase catalytic; SPTR: uncharacterized protein; PFAM: Caspase domain YP_004271354.1 KEGG: ctp:CTRG_01649 hypothetical protein; SPTR: uncharacterized protein F12M12_210 YP_004271355.1 KEGG: zma:100285835 LOC100285835; SPTR: uncharacterized protein YP_004271356.1 InterPro IPR011447; KEGG: rba:RB10014 hypothetical protein; PFAM: protein of unknown function DUF1552; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1552) YP_004271357.1 InterPro IPR013036: IPR013043: IPR013042: IPR013039; KEGG: rba:RB10010 signal peptide; PFAM: hypothetical protein; protein of unknown function DUF1592; protein of unknown function DUF1587; protein of unknown function DUF1595; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1592); protein of unknown function (DUF1587); protein of unknown function (DUF1588); protein of unknown function (DUF1595); protein of unknown function (DUF1585) YP_004271358.1 InterPro IPR010869: IPR006311; KEGG: rba:RB6053 sulfatase; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; manually curated; PFAM: protein of unknown function (DUF1501) YP_004271359.1 InterPro IPR011444; KEGG: rba:RB6054 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004271360.1 COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB13048 hypothetical protein; SPTR: uncharacterized protein YP_004271361.1 InterPro IPR012902; KEGG: plm:Plim_4238 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271362.1 KEGG: plm:Plim_2790 hypothetical protein; SPTR: uncharacterized protein YP_004271363.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271364.1 COGs: COG3250 beta-galactosidase/beta-glucuronidase; InterPro IPR006104: IPR006102: IPR006710; KEGG: rba:RB3405 hydrolase; PFAM: glycoside hydrolase family 2, carbohydrate-binding; glycoside hydrolase family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 43; SPTR: hydrolase; PFAM: domain; glycosyl hydrolases family 2, TIM barrel domain; glycosyl hydrolases family 43; glycosyl hydrolases family 2, sugar binding domain YP_004271365.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB2377 arylsulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004271366.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB1610 arylsulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004271367.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: rba:RB6537 aldose 1-epimerase; PFAM: aldose 1-epimerase; PRIAM: aldose 1-epimerase; SPTR: aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004271368.1 COGs: COG4146 symporter; InterPro IPR001734: IPR019900; KEGG: csa:Csal_1283 symporter YidK; PFAM: Sodium/solute symporter; SPTR: Predicted transporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter SSS family YP_004271369.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rba:RB7294 glucose 1-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Probable glucose 1-dehydrogenase; PFAM: short chain dehydrogenase YP_004271371.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271372.1 KEGG: psl:Psta_1272 hypothetical protein; SPTR: uncharacterized protein YP_004271373.1 COGs: COG1609 transcriptional regulators; InterPro IPR000005: IPR018060; KEGG: rba:RB6542 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271374.1 KEGG: hne:HNE_0452 tRNA delta(2)-isopentenylpyrophosphate transferase; SPTR: uncharacterized protein YP_004271375.1 COGs: COG1609 transcriptional regulators; InterPro IPR001761: IPR000005: IPR018060; KEGG: rba:RB6542 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family YP_004271376.1 KEGG: ehi:EHI_178900 Ras family protein; SPTR: Ras family protein YP_004271377.1 InterPro IPR014862; KEGG: rpc:RPC_0651 ATP-dependent exoDNAse (exonuclease V) subunit alpha; PFAM: TrwC relaxase; SPTR: mobilization protein TraA; PFAM: TrwC relaxase; TIGRFAM: conjugative relaxase domain, TrwC/TraI family YP_004271378.1 KEGG: mct:MCR_1192 hypothetical protein; SPTR: uncharacterized protein YP_004271379.1 KEGG: sml:Smlt3075 hypothetical protein; SPTR: uncharacterized protein YP_004271380.1 KEGG: bbu:BB0658 phosphoglyceromutase; SPTR: uncharacterized protein YP_004271381.1 InterPro IPR000551; KEGG: gwc:GWCH70_3181 DNA binding domain protein, excisionase family; PFAM: HTH transcriptional regulator, MerR; SPTR: uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family YP_004271382.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: rba:RB5081 ECF-like sigma factor SigE; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable ECF-like sigma factor SigE; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004271383.1 KEGG: mbr:MONBRDRAFT_37502 hypothetical protein; SPTR: uncharacterized protein YP_004271384.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR013517: IPR005532; KEGG: mar:MAE_42710 serine/threonine kinase; PFAM: Sulphatase-modifying factor; FG-GAP; SPTR: Genome sequencing data, contig C284; PFAM: Formylglycine-generating sulfatase enzyme; ASPIC and UnbV; FG-GAP repeat YP_004271385.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: msm:MSMEG_6314 haloalkane dehalogenase; PFAM: alpha/beta hydrolase fold-1; PRIAM: Haloalkane dehalogenase; SPTR: Haloalkane dehalogenase 1; PFAM: alpha/beta hydrolase fold YP_004271386.1 COGs: COG3509 poly(3-hydroxybutyrate) depolymerase; InterPro IPR018248: IPR003140; KEGG: fre:Franean1_0373 polyhydroxybutyrate depolymerase; PFAM: EF-Hand, Calmodulin; phospholipase/carboxylesterase; SPTR: polyhydroxybutyrate depolymerase; PFAM: esterase PHB depolymerase YP_004271387.1 COGs: COG3509 poly(3-hydroxybutyrate) depolymerase; KEGG: amr:AM1_4420 esterase, SPTR: esterase, ; PFAM: prolyl oligopeptidase family YP_004271388.1 COGs: COG0657 esterase/lipase; KEGG: psl:Psta_0748 alpha/beta hydrolase fold-3 domain protein; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold YP_004271389.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_1326 sulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271391.1 KEGG: gvi:glr1689 hypothetical protein; SPTR: Glr1689 protein YP_004271392.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466: IPR018248: IPR002048; KEGG: gvi:glr3508 hypothetical protein; PFAM: beta-lactamase-related; EF-Hand, Calmodulin; SMART: Calcium-binding EF-hand; SPTR: Glr3508 protein; PFAM: beta-lactamase YP_004271393.1 InterPro IPR013740; KEGG: psl:Psta_2862 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: signal transduction protein with EFhand domain; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; Redoxin YP_004271394.1 KEGG: rba:RB2173 hypothetical protein; SPTR: uncharacterized protein YP_004271396.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004271398.1 KEGG: lif:LinJ36.1420 hypothetical protein; SPTR: Sperm protamine P1 YP_004271399.1 COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: bad:BAD_0090 thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: thiamine biosynthesis protein ThiF; PFAM: ThiF family YP_004271400.1 KEGG: cin:100177942 similar to LOC733953 protein; SPTR: uncharacterized protein YP_004271401.1 KEGG: ngr:NAEGRDRAFT_73733 hypothetical protein; SPTR: uncharacterized protein YP_004271402.1 KEGG: dge:Dgeo_0329 molybdopterin converting factor, subunit 1; SPTR: uncharacterized protein YP_004271403.1 KEGG: psl:Psta_3410 hypothetical protein; SPTR: uncharacterized protein YP_004271404.1 KEGG: psl:Psta_3411 hypothetical protein; SPTR: uncharacterized protein YP_004271405.1 KEGG: psl:Psta_3412 hypothetical protein; SPTR: uncharacterized protein YP_004271406.1 KEGG: btb:BMB171_C0236 redox-sensing transcriptional repressor REX; SPTR: uncharacterized protein YP_004271407.1 COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959: IPR003593; KEGG: psl:Psta_3414 ATPase AAA central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004271408.1 KEGG: psl:Psta_3415 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF2997) YP_004271409.1 KEGG: psl:Psta_3416 hypothetical protein; SPTR: uncharacterized protein YP_004271410.1 KEGG: dvi:Dvir_GJ12283 GJ12283 gene product from transcript GJ12283-RA; SPTR: GJ12283 YP_004271411.1 InterPro IPR006119; KEGG: dsh:Dshi_0396 recombinase; PFAM: Resolvase, N-terminal; SPTR: Site-specific recombinase and resolvase superfamily protein; PFAM: Recombinase; Resolvase, N terminal domain YP_004271412.1 KEGG: psl:Psta_3720 hypothetical protein; SPTR: uncharacterized protein YP_004271413.1 KEGG: aba:acid345_1548 molybdenum-pterin binding protein; SPTR: uncharacterized protein YP_004271414.1 KEGG: psl:Psta_3721 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phage integrase family YP_004271415.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB12432 arylsulfatase A precursor; PFAM: Sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004271416.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4851 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004271417.1 COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR019546: IPR000627: IPR006311; KEGG: rba:RB7678 protocatechuate 3,4-dioxygenase subunit beta; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Probable protocatechuate 3,4-dioxygenase, beta subunit; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Dioxygenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004271418.1 KEGG: rba:RB10957 hypothetical protein; SPTR: uncharacterized protein; PFAM: Rho termination factor, N-terminal domain YP_004271419.1 InterPro IPR008915; KEGG: psl:Psta_2183 peptidase M50; PFAM: peptidase M50; SPTR: uncharacterized protein; PFAM: peptidase family M50 YP_004271420.1 InterPro IPR003018; KEGG: psl:Psta_2185 phytochrome sensor protein; PFAM: GAF; SMART: GAF; SPTR: uncharacterized protein YP_004271421.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR011115: IPR011130: IPR001650: IPR000185; KEGG: psl:Psta_0860 SecA DEAD domain protein; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; DNA/RNA helicase, C-terminal; SPTR: translocase; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; Helicase conserved C-terminal domain YP_004271422.1 InterPro IPR000089; KEGG: plm:Plim_3437 secretion protein HlyD family protein; PFAM: Biotin/lipoyl attachment; SPTR: Probable multidrug efflux pump YP_004271423.1 COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: aba:acid345_3648 protein of unknown function DUF71, ATPase; PFAM: protein of unknown function DUF71, ATP-binding domain; SPTR: uncharacterized protein; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain YP_004271424.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transporter periplasmic component; InterPro IPR002491; KEGG: rba:RB11981 ABC transporter substrate-binding protein; PFAM: Periplasmic binding protein; SPTR: Probable ABC transporter (substrate-binding protein); PFAM: Periplasmic binding protein YP_004271425.1 KEGG: rba:RB6463 hypothetical protein; SPTR: uncharacterized protein YP_004271426.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: pmy:Pmen_3185 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Uncharacterized protein yaiC; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004271427.1 InterPro IPR002007: IPR001343; KEGG: rba:RB633 peroxidase; PFAM: Haem peroxidase animal; Haemolysin-type calcium-binding repeat; PRIAM: peroxidase; SPTR: peroxidase; PFAM: Animal haem peroxidase; Hemolysin-type calcium-binding repeat (2 copies) YP_004271429.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: rba:RB950 amino acid transporter; PFAM: Amino acid permease domain; SPTR: Amino acid transporter; PFAM: Amino acid permease; TC 2.A.3 YP_004271430.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: dra:DR_0273 hypothetical protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: uncharacterized protein; PFAM: MOSC domain YP_004271431.1 COGs: COG0158 fructose-1 6-bisphosphatase; HAMAP: fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: psl:Psta_4531 inositol phosphatase/fructose-16-bisphosphatase; PFAM: fructose-1,6-bisphosphatase; PRIAM: fructose-bisphosphatase; SPTR: fructose-1,6-bisphosphatase class 1; PFAM: fructose-1-6-bisphosphatase YP_004271432.1 COGs: COG0021 transketolase; InterPro IPR005474: IPR005475: IPR005476; KEGG: tye:THEYE_A0954 transketolase; PFAM: transketolase, N-terminal; transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; PRIAM: transketolase; SPTR: transketolase; PFAM: transketolase, thiamine diphosphate binding domain; transketolase, C-terminal domain; transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004271433.1 COGs: COG0364 glucose-6-phosphate 1-dehydrogenase; InterPro IPR001282; KEGG: srm:SRM_00083 glucose-6-phosphate dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: glucose-6-phosphate dehydrogenase; SPTR: glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, NAD binding domain; glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_004271434.1 COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: zpr:ZPR_2290 CDF family cation efflux protein; PFAM: Cation efflux protein; SPTR: CDF family cation efflux protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004271435.1 COGs: COG3569 Topoisomerase IB; KEGG: mno:Mnod_5352 DNA topoisomerase I; SPTR: DNA topoisomerase I; PFAM: Eukaryotic DNA topoisomerase I, catalytic core YP_004271436.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: tal:Thal_0142 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: histidine triad (HIT) protein; PFAM: HIT domain YP_004271437.1 COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR002376; KEGG: plm:Plim_0191 formyl transferase; PFAM: Formyl transferase, N-terminal; PRIAM: Formyltetrahydrofolate deformylase; SPTR: Formyltetrahydrofolate deformylase; PFAM: Formyl transferase YP_004271438.1 COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822: IPR001932; KEGG: plm:Plim_2083 stage II sporulation E family protein; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-related; SPTR: stage II sporulation E family protein; PFAM: stage II sporulation protein E (SpoIIE) YP_004271439.1 KEGG: plm:Plim_1224 hypothetical protein; SPTR: uncharacterized protein YP_004271440.1 KEGG: psl:Psta_0300 hypothetical protein; SPTR: uncharacterized protein YP_004271441.1 KEGG: plm:Plim_2010 hypothetical protein; SPTR: uncharacterized protein YP_004271443.1 KEGG: nml:Namu_0541 hypothetical protein; SPTR: uncharacterized protein YP_004271444.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119: IPR011109; KEGG: hoh:Hoch_2866 resolvase domain protein; PFAM: Resolvase, N-terminal; Recombinase; SPTR: Resolvase domain protein; PFAM: Recombinase; Resolvase, N terminal domain YP_004271445.1 KEGG: ppa:PAS_chr4_0320 hypothetical protein; SPTR: uncharacterized protein YP_004271446.1 KEGG: bpe:BP2115 hypothetical protein; SPTR: radical SAM domain protein YP_004271447.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004271448.1 InterPro IPR000524; KEGG: bja:blr2901 transcriptional regulatory protein; PFAM: HTH transcriptional regulator, GntR; SPTR: Predicted von Willibrand factor containing protein; PFAM: Bacterial regulatory proteins, gntR family YP_004271449.1 KEGG: dia:Dtpsy_1768 Sel1 domain protein repeat-containing protein; SPTR: uncharacterized protein YP_004271450.1 InterPro IPR001387; KEGG: ctt:CtCNB1_1501 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Restriction-modification system regulatory protein, ; PFAM: Helix-turn-helix YP_004271451.1 KEGG: msl:Msil_1737 amine oxidase; SPTR: Amine oxidase YP_004271452.1 KEGG: psl:Psta_3410 hypothetical protein; SPTR: uncharacterized protein YP_004271453.1 KEGG: dge:Dgeo_0329 molybdopterin converting factor, subunit 1; SPTR: uncharacterized protein YP_004271454.1 KEGG: ngr:NAEGRDRAFT_73733 hypothetical protein; SPTR: uncharacterized protein YP_004271455.1 KEGG: mrd:Mrad2831_3038 hypothetical protein; SPTR: uncharacterized protein YP_004271456.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: sai:Saci_0179 dinucleotide-utilizing enzyme; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: thiamine biosynthesis protein ThiF; PFAM: ThiF family YP_004271457.1 KEGG: rle:pRL120546 short-chain dehydrogenase/oxidoreductase; SPTR: short-chain dehydrogenase/oxidoreductase YP_004271458.1 InterPro IPR004370; KEGG: bph:Bphy_6795 4-oxalocrotonate tautomerase; PFAM: 4-oxalocrotonate tautomerase; SPTR: 4-oxalocrotonate tautomerase; PFAM: Tautomerase enzyme YP_004271459.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: ade:Adeh_1207 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: carbonyl reductase [NADPH] 1 (Nadph-dependent carbonylreductase 1) (20-beta-hydroxysteroid dehydrogenase) (Prostaglandin-e(2) 9-reductase); PFAM: short chain dehydrogenase YP_004271460.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: cyn:Cyan7425_2143 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271461.1 COGs: COG5361 conserved hypothetical protein; InterPro IPR010679: IPR010621; KEGG: sme:SMc01184 hypothetical protein; PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; SPTR: Hypothetical transmembrane protein; manually curated; PFAM: protein of unknown function (DUF1214); protein of unknown function (DUF1254) YP_004271462.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917: IPR012680; KEGG: nwa:Nwat_0835 sulfatase; PFAM: Sulfatase; Laminin G, subdomain 2; SPTR: Sulfatase; PFAM: Sulfatase YP_004271463.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: nwa:Nwat_0834 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271464.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: ava:Ava_0111 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271465.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: vfm:VFMJ11_A0079 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271466.1 KEGG: cca:CCA00793 hypothetical protein; SPTR: uncharacterized protein YP_004271467.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: psa:PST_3751 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004271468.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729: IPR019856; KEGG: sat:SYN_02473 cytoplasmic protein; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated endonuclease Cas1, DVULG subtype; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, DVULG subtype; CRISPR-associated endonuclease Cas1 YP_004271469.1 COGs: COG3183 restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: dra:DR_1726 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Disrupted by IS8301 insertion; PFAM: HNH endonuclease YP_004271470.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: sat:SYN_02474 exonuclease N; SPTR: CRISPR-associated protein Cas4; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_004271471.1 COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482: IPR013418; KEGG: ddd:Dda3937_02860 CRISPR-associated protein, TM1801 family; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein, TM1801 family; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family YP_004271472.1 InterPro IPR010144; KEGG: dma:DMR_14370 hypothetical protein; PFAM: CRISPR-associated protein, Csd1-type; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csd1-type; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family YP_004271473.1 InterPro IPR021124: IPR013422: IPR010155; KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; PFAM: CRISPR-associated protein, Cas5; SPTR: CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5, N-terminal domain; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain YP_004271474.1 COGs: COG1203 helicase; InterPro IPR006483: IPR006474: IPR014001; KEGG: dvm:DvMF_1971 CRISPR-associated helicase Cas3; SMART: DEAD-like helicase, N-terminal; SPTR: CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_004271475.1 KEGG: azl:AZL_f00930 transposase; SPTR: transposase of insertion sequence ISRm10-1, orfBC-terminus protein YP_004271476.1 KEGG: psl:Psta_4623 hypothetical protein; SPTR: uncharacterized protein YP_004271477.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006323: IPR006439; KEGG: plm:Plim_3627 phosphonoacetaldehyde hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: phosphonoacetaldehyde hydrolase; SPTR: phosphonoacetaldehyde hydrolase; TIGRFAM: phosphonoacetaldehyde hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphonoacetaldehyde hydrolase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004271478.1 COGs: COG1454 alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: bfr:BF2576 alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type; PRIAM: alcohol dehydrogenase; SPTR: alcohol dehydrogenase, ; PFAM: Iron-containing alcohol dehydrogenase YP_004271479.1 COGs: COG3540 phosphodiesterase/alkaline phosphatase D; KEGG: psl:Psta_0813 phosphodiesterase/alkaline phosphatase D-like protein; SPTR: phosphodiesterase/alkaline phosphatase D-like protein; PFAM: PhoD-like phosphatase YP_004271480.1 InterPro IPR001387: IPR013096; KEGG: plm:Plim_2902 cupin 2 conserved barrel domain protein; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain; Helix-turn-helix YP_004271481.1 COGs: COG0665 glycine/D-amino acid oxidase (deaminating); InterPro IPR006076: IPR017741; KEGG: plm:Plim_0101 FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; TIGRFAM: FAD-dependent oxidoreductase, HpnW; PFAM: FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364 YP_004271482.1 COGs: COG4296 conserved hypothetical protein; KEGG: cac:CA_C0781 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2262) YP_004271483.1 KEGG: msv:Mesil_0922 copper resistance D domain protein; SPTR: uncharacterized protein YP_004271484.1 KEGG: gla:GL50803_221689 ABC transporter SPTR: ABC transporter YP_004271486.1 InterPro IPR010496; KEGG: fbc:FB2170_12071 hypothetical protein; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080) YP_004271487.1 COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB12303 serine/threonine protein kinase related protein; SPTR: Probable serine/threonine protein kinase related protein YP_004271488.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB2707 iduronate-2-sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate-2-sulfatase; PFAM: Sulfatase YP_004271489.1 COGs: COG0657 esterase/lipase; KEGG: rba:RB7562 lipase/esterase; SPTR: Probable lipase/esterase; PFAM: alpha/beta hydrolase fold YP_004271490.1 KEGG: rba:RB749 serine/threonine protein kinase related protein; SPTR: Probable serine/threonine protein kinase related protein YP_004271491.1 COGs: COG1506 dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: rba:RB13156 lipase/esterase; SPTR: Probable lipase/esterase; PFAM: alpha/beta hydrolase fold YP_004271492.1 COGs: COG4219 antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: rba:RB756 beta-lactamase regulatory protein; PFAM: peptidase M56, BlaR1; SPTR: Probable regulatory protein blaR1; PFAM: BlaR1 peptidase M56 YP_004271493.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: smt:Smal_3667 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: CopY family transcriptional regulator; PFAM: Penicillinase repressor YP_004271494.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB13157 mucin-desulfating sulfatase; PFAM: Sulfatase; SPTR: Mucin-desulfating sulfatase; PFAM: Sulfatase YP_004271495.1 KEGG: fbc:FB2170_03925 secreted sialidase; SPTR: uncharacterized protein YP_004271496.1 InterPro IPR012902; KEGG: plm:Plim_0027 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271497.1 COGs: COG1858 cytochrome C peroxidase; InterPro IPR004852; KEGG: plm:Plim_0026 cytochrome-c peroxidase; PFAM: Di-haem cytochrome C peroxidase; PRIAM: cytochrome-c peroxidase; SPTR: Di-haem cytochrome C peroxidase family protein; PFAM: Di-haem cytochrome C peroxidase YP_004271498.1 InterPro IPR000421; KEGG: plm:Plim_0094 hypothetical protein; PFAM: Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein YP_004271499.1 KEGG: rba:RB3775 hypothetical protein; SPTR: uncharacterized protein YP_004271500.1 KEGG: psl:Psta_4167 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004271501.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: rba:RB9584 ripening-induced protein- Zn-containing oxidoreductase; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Ripening-induced protein- Zn-containing oxidoreductase; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004271503.1 COGs: COG0376 catalase (peroxidase I); HAMAP: catalase-peroxidase haem; InterPro IPR002016: IPR000763; KEGG: psl:Psta_2741 catalase/peroxidase HPI; PFAM: Haem peroxidase plant/fungal/bacterial; PRIAM: catalase; SPTR: catalase-peroxidase; TIGRFAM: catalase-peroxidase haem; PFAM: peroxidase; TIGRFAM: catalase/peroxidase HPI YP_004271504.1 COGs: COG1943 transposase and inactivated derivatives; KEGG: rpe:RPE_2066 hypothetical protein; SPTR: uncharacterized protein; PFAM: transposase IS200 like YP_004271505.1 COGs: COG0492 thioredoxin reductase; InterPro IPR000595: IPR013027; KEGG: rba:RB1488 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding; PRIAM: thioredoxin-disulfide reductase; SMART: Cyclic nucleotide-binding; SPTR: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain YP_004271506.1 COGs: COG1609 transcriptional regulators; InterPro IPR000005: IPR018060; KEGG: rba:RB1454 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271507.1 KEGG: gka:GK3175 hypothetical protein; SPTR: uncharacterized protein GK3175 YP_004271508.1 InterPro IPR006860; KEGG: rba:RB11471 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004271509.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: plm:Plim_1876 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Probable RNA polymerase sigma factor rfaY; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004271510.1 COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; KEGG: ami:Amir_2529 metallophosphoesterase; SPTR: metallophosphoesterase; PFAM: Predicted periplasmic protein (DUF2233) YP_004271511.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: glo:Glov_1807 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_004271512.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: gsu:GSU0452 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Heavy metal sensor signal transduction histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: heavy metal sensor kinase YP_004271513.1 COGs: COG1538 Outer membrane protein; KEGG: rba:RB183 outer membrane protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004271514.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089: IPR006143; KEGG: rba:RB188 membrane-fusion protein; PFAM: Biotin/lipoyl attachment; SPTR: Probable membrane-fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004271515.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: rba:RB191 AcrB/AcrD/AcrF family cation efflux protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system, AcrB/AcrD/AcrF family; PFAM: AcrB/AcrD/AcrF family YP_004271516.1 InterPro IPR013428: IPR013427; KEGG: sli:Slin_5487 membrane-bound dehydrogenase domain protein; SPTR: uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: NPCBM/NEW2 domain; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004271517.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_3646 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Probable sulfatase atsG; PFAM: Sulfatase YP_004271518.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: rba:RB3549 lactose operon transcription activator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_004271519.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR004155: IPR000923: IPR003088: IPR013428: IPR 013427; KEGG: rba:RB2605 azurin precursor; PFAM: Blue (type 1) copper domain; PBS lyase HEAT-like repeat; cytochrome C, class I; SPTR: Similar to azurin; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome c; Copper binding proteins, plastocyanin/azurin family; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004271520.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: rba:RB203 oxidoreductase; PFAM: Aldo/keto reductase; PRIAM: D-arabinose 1-dehydrogenase; SPTR: oxidoreductase-possibly Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004271521.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: psl:Psta_0941 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_004271522.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB201 sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel YP_004271523.1 KEGG: plm:Plim_1355 hypothetical protein; SPTR: uncharacterized protein YP_004271524.1 COGs: COG1028 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rba:RB8728 D-mannonate oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: oxidoreductase; PFAM: short chain dehydrogenase YP_004271525.1 COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: psl:Psta_0937 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; PFAM: Amidohydrolase YP_004271526.1 KEGG: rba:RB4015 signal peptide; SPTR: uncharacterized protein YP_004271527.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB12431 sulfatase; PFAM: Sulfatase; SPTR: Probable sulfatase; PFAM: Sulfatase YP_004271528.1 KEGG: dfe:Dfer_3173 signal peptide; SPTR: uncharacterized protein; PFAM: Trehalose utilisation YP_004271529.1 InterPro IPR013517; KEGG: mbr:MONBRDRAFT_12958 hypothetical protein; PFAM: FG-GAP; SPTR: uncharacterized protein; PFAM: FG-GAP repeat YP_004271530.1 KEGG: dal:Dalk_1869 hypothetical protein; SPTR: uncharacterized protein YP_004271531.1 COGs: COG2165 type II secretory pathway pseudopilin PulG; InterPro IPR012902; KEGG: rba:RB6634 signal peptide; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271532.1 KEGG: cin:100180783 similar to solute carrier family 30 (zinc transporter), member 7; SPTR: Zinc transporter zitB YP_004271533.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_3724 sulfatase; PFAM: Sulfatase; SPTR: secreted sulfatase ydeN; PFAM: Sulfatase YP_004271534.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_05235 secreted sulfatase YdeN precursor; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: secreted sulfatase ydeN; PFAM: Sulfatase YP_004271535.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4261 sulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase A (ASA); PFAM: Sulfatase YP_004271536.1 InterPro IPR013096; KEGG: rhi:NGR_b05650 cupin domain protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin region protein; PFAM: Cupin domain YP_004271537.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR003779: IPR004675; KEGG: bja:blr7595 hypothetical protein; PFAM: carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase AhpD core; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_004271538.1 COGs: COG1167 transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524: IPR004839; KEGG: rxy:Rxyl_0136 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR; SPTR: GntR family transcriptional regulator with aminotransferase activity; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II YP_004271539.1 KEGG: amd:AMED_5431 hypothetical protein; SPTR: High affinity sulfate transporter (SulP) YP_004271540.1 KEGG: scl:sce1819 hypothetical protein; SPTR: uncharacterized protein YP_004271541.1 InterPro IPR012902; KEGG: psl:Psta_2737 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271542.1 KEGG: psl:Psta_2736 hypothetical protein; SPTR: uncharacterized protein YP_004271543.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523: IPR004482: IPR003593; KEGG: plm:Plim_0159 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: ComM protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004271544.1 InterPro IPR013096; KEGG: rba:RB4123 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; PFAM: Cupin domain YP_004271545.1 InterPro IPR012680: IPR001791: IPR006558; KEGG: rba:RB10999 cycloinulo-oligosaccharide fructanotransferase; PFAM: Laminin G, subdomain 2; SMART: LamG-like jellyroll fold; Laminin G; SPTR: Probable cycloinulo-oligosaccharide fructanotransferase; PFAM: Laminin G domain YP_004271546.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR003779: IPR004675; KEGG: pcu:pc1148 hypothetical protein; PFAM: carboxymuconolactone decarboxylase; SPTR: uncharacterized protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain YP_004271547.1 COGs: COG3118 thioredoxin; InterPro IPR013766: IPR005746; KEGG: nda:Ndas_4860 thioredoxin; PFAM: thioredoxin domain; SPTR: thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin YP_004271548.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: mva:Mvan_1605 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271549.1 KEGG: scl:sce2304 hypothetical protein; SPTR: uncharacterized protein YP_004271550.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dal:Dalk_3416 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter MFP subunit YP_004271551.1 COGs: COG0566 rRNA methylase; InterPro IPR013123: IPR001537; KEGG: plm:Plim_3360 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA methylase family YP_004271552.1 KEGG: rba:RB4823 hypothetical protein; SPTR: uncharacterized protein YP_004271553.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: rba:RB3908 hypothetical protein; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004271554.1 COGs: COG0082 chorismate synthase; InterPro IPR000453; KEGG: plm:Plim_1702 chorismate synthase; PFAM: chorismate synthase; PRIAM: chorismate synthase; SPTR: chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; TIGRFAM: chorismate synthase YP_004271555.1 COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: plm:Plim_0135 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: aspartate transaminase; SPTR: aspartate aminotransferase; PFAM: Aminotransferase class I and II YP_004271556.1 COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: psl:Psta_2344 molybdopterin biosynthesis MoaE protein; PFAM: Molybdopterin biosynthesis MoaE; SPTR: Molybdopterin converting factor (Subunit 2); PFAM: MoaE protein YP_004271557.1 InterPro IPR003749; KEGG: bts:Btus_2370 hypothetical protein; PFAM: thiamineS; SPTR: Molybdopterin converting factor, subunit 1; PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal YP_004271558.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113: IPR004017; KEGG: psl:Psta_2342 D-lactate dehydrogenase; PFAM: FAD linked oxidase N-terminal; FAD-linked oxidase C-terminal; Cysteine-rich domain; PRIAM: D-lactate dehydrogenase; SPTR: oxidase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain YP_004271559.1 COGs: COG0514 Superfamily II DNA helicase; InterPro IPR006293: IPR018329: IPR011545: IPR001650: IPR 018982: IPR002121: IPR014001; KEGG: plm:Plim_1229 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family YP_004271560.1 COGs: COG0047 phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: phosphoribosylformylglycinamidine synthase I; InterPro IPR010075; KEGG: plm:Plim_3854 phosphoribosylformylglycinamidine synthase; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase I (PurQ); TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: DJ-1/PfpI family; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_004271561.1 InterPro IPR013216; KEGG: sfu:Sfum_3152 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004271562.1 InterPro IPR013216; KEGG: min:Minf_1771 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain YP_004271563.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gme:Gmet_2344 beta-1,4-glucosyltransferase; PFAM: glycosyl transferase, family 2; SPTR: Probable beta-1,4-glucosyltransferase; PFAM: glycosyl transferase family 2 YP_004271564.1 KEGG: bcv:Bcav_1203 methyltransferase; SPTR: methyltransferase; PFAM: Macrocin-O-methyltransferase (TylF) YP_004271565.1 KEGG: ccs:CCNA_00065 hypothetical protein; SPTR: uncharacterized protein YP_004271566.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: spe:Spro_4833 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: glycosyl transferases group 1 YP_004271567.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mgm:Mmc1_1923 glycosyl transferase, group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1; PFAM: glycosyl transferases group 1 YP_004271568.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: hha:Hhal_2363 glycosyl transferase, group 1; PFAM: glycosyl transferase, group 1; SPTR: Capsular polysaccharide biosynthesis protein; PFAM: glycosyl transferases group 1 YP_004271569.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR001140: IPR003439: IPR003593; KEGG: plm:Plim_0935 ABC transporter; PFAM: ABC transporter-like; ABC transporter transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region YP_004271570.1 InterPro IPR001330; KEGG: plm:Plim_3681 prenyltransferase/squalene oxidase; PFAM: prenyltransferase/squalene oxidase; SPTR: Probable beta-subunit of geranylgeranyltransferase or farnesyltransferase; PFAM: prenyltransferase and squalene oxidase repeat YP_004271571.1 KEGG: npu:Npun_F5232 hypothetical protein; SPTR: uncharacterized protein YP_004271572.1 InterPro IPR000845; KEGG: rpd:RPD_3572 hypothetical protein; PFAM: nucleoside phosphorylase; SPTR: Purine and other phosphorylase, family 1; manually curated; PFAM: phosphorylase superfamily YP_004271573.1 HAMAP: Uncharacterised protein family, zinc-binding; InterPro IPR005584; KEGG: plm:Plim_3384 protein of unknown function DUF329; SPTR: UPF0243 zinc-binding protein PM8797T_15176; PFAM: Domain of unknown function (DUF329) YP_004271574.1 COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: plm:Plim_2923 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, SPTR: uncharacterized protein; TIGRFAM: Regulatory protein, FmdB, PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family YP_004271575.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: bay:RBAM_023780 heat shock protein GrpE; PFAM: GrpE nucleotide exchange factor; SPTR: protein grpE; PFAM: GrpE YP_004271576.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR012724: IPR001623: IPR001305: IPR002939; KEGG: plm:Plim_2925 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; heat shock protein DnaJ, N-terminal; heat shock protein DnaJ, cysteine-rich domain; SMART: heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein dnaJ; TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004271577.1 COGs: COG0459 chaperonin GroEL (HSP60 family); HAMAP: chaperonin Cpn60; InterPro IPR001844: IPR002423; KEGG: plm:Plim_2926 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004271578.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: chaperonin Cpn10, subgroup; InterPro IPR001476: IPR020818; KEGG: plm:Plim_2927 chaperonin Cpn10; PFAM: chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: chaperonin 10 Kd subunit YP_004271579.1 COGs: COG0459 chaperonin GroEL (HSP60 family); HAMAP: chaperonin Cpn60; InterPro IPR001844: IPR002423; KEGG: plm:Plim_2928 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004271580.1 KEGG: plm:Plim_2315 hypothetical protein; SPTR: uncharacterized protein YP_004271581.1 KEGG: plm:Plim_2316 hypothetical protein; SPTR: Probable O-linked GlcNAc transferase- TPR-containing transmembrane protein YP_004271582.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_2682 sulfatase; PFAM: Sulfatase; PRIAM: Iduronate-2-sulfatase; SPTR: Iduronate sulfatase; PFAM: Sulfatase YP_004271583.1 COGs: COG0459 chaperonin GroEL (HSP60 family); HAMAP: chaperonin Cpn60; InterPro IPR001844: IPR002423; KEGG: plm:Plim_2524 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004271584.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: chaperonin Cpn10, subgroup; InterPro IPR001476: IPR020818; KEGG: plm:Plim_2523 chaperonin Cpn10; PFAM: chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: chaperonin 10 Kd subunit YP_004271585.1 COGs: COG1186 protein chain release factor B; InterPro IPR000352; KEGG: plm:Plim_0816 class I peptide chain release factor; PFAM: class I peptide chain release factor; SPTR: uncharacterized protein; PFAM: RF-1 domain YP_004271586.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: lhk:LHK_01841 lysine decarboxylase; PFAM: Conserved hypothetical protein CHP00730; SPTR: lysine decarboxylase; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 2 YP_004271587.1 COGs: COG1641 conserved hypothetical protein; HAMAP: UPF0272 protein; InterPro IPR002822; KEGG: plm:Plim_2400 protein of unknown function DUF111; PFAM: protein of unknown function DUF111; SPTR: uncharacterized protein; TIGRFAM: protein of unknown function DUF111; PFAM: protein of unknown function DUF111; TIGRFAM: conserved hypothetical protein TIGR00299 YP_004271588.1 KEGG: spu:586109 similar to thyroid hormone receptor interactor 11; SPTR: uncharacterized protein YP_004271589.1 COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429: IPR001804; KEGG: plm:Plim_3900 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_004271590.1 KEGG: pde:Pden_2307 cytochrome C1; SPTR: uncharacterized protein YP_004271591.1 COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mxa:MXAN_3469 group 2 family glycosyl transferase; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2 YP_004271592.1 InterPro IPR013216; KEGG: eli:ELI_02045 hypothetical protein; PFAM: methyltransferase type 11; SPTR: uncharacterized protein; PFAM: methyltransferase domain YP_004271593.1 InterPro IPR007419; KEGG: sfu:Sfum_2684 Fe-S cluster assembly protein NifU; PFAM: BFD-like [2Fe-2S]-binding domain; SPTR: nitrite reductase [NAD(P)H], large subunit; PFAM: BFD-like [2Fe-2S] binding domain YP_004271594.1 COGs: COG0456 acetyltransferase; InterPro IPR006464: IPR000182; KEGG: plm:Plim_1165 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Probable ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase YP_004271595.1 InterPro IPR001440: IPR019734; KEGG: brm:Bmur_1362 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: hypothetical protein YP_004271596.1 InterPro IPR011020; KEGG: psl:Psta_2891 HTTM domain protein; SMART: HTTM; SPTR: uncharacterized protein YP_004271597.1 KEGG: psl:Psta_2892 hypothetical protein; SPTR: uncharacterized protein YP_004271598.1 InterPro IPR017460; KEGG: mdo:100024658 similar to corneodesmosin; SPTR: Keratin; TIGRFAM: Conserved hypothetical domain CHP03000, planctomycetes; TIGRFAM: Planctomycetes uncharacterized domain TIGR03000 YP_004271599.1 KEGG: dal:Dalk_3089 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3592) YP_004271600.1 KEGG: plm:Plim_1799 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004271601.1 KEGG: bcj:BCAM2313 choline-sulfatase; SPTR: Sulfatase YP_004271602.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254; KEGG: plm:Plim_2347 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; SPTR: peptidase S1 and S6 chymotrypsin/Hap; PFAM: Trypsin YP_004271603.1 COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: psl:Psta_4766 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: uncharacterized protein; PFAM: Sodium Bile acid symporter family YP_004271604.1 KEGG: plm:Plim_4076 hypothetical protein; SPTR: uncharacterized protein YP_004271605.1 COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006269: IPR006218; KEGG: plm:Plim_4193 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase YP_004271606.1 COGs: COG3064 membrane protein involved in colicin uptake; KEGG: tva:TVAG_368240 plectin; SPTR: Plectin YP_004271607.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sat:SYN_00031 molecular chaperone; PFAM: heat shock protein Hsp20; SPTR: Molecular chaperone; PFAM: Hsp20/alpha crystallin family YP_004271608.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: bpd:BURPS668_3388 HSP20 family protein; PFAM: heat shock protein Hsp20; SPTR: heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_004271609.1 KEGG: plm:Plim_3003 hypothetical protein; SPTR: uncharacterized protein YP_004271610.1 COGs: COG0113 delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: hoh:Hoch_3924 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: porphobilinogen synthase; SPTR: delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_004271611.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004271612.1 KEGG: ehi:EHI_019290 hypothetical protein; SPTR: uncharacterized protein YP_004271613.1 KEGG: plm:Plim_0783 hypothetical protein; SPTR: uncharacterized protein YP_004271614.1 COGs: COG1391 glutamine synthetase adenylyltransferase; InterPro IPR005190: IPR013546: IPR002912; KEGG: plm:Plim_2324 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/glutamine-synthetase adenylyltransferase; Amino acid-binding ACT; PRIAM: [glutamate--ammonia-ligase] adenylyltransferase; SPTR: glutamine synthetase adenylyltransferase-like protein; PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase YP_004271615.1 KEGG: plm:Plim_1032 hypothetical protein; SPTR: uncharacterized protein YP_004271616.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: plm:Plim_3975 protein of unknown function DUF558; PFAM: ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_004271617.1 InterPro IPR018967: IPR006622; KEGG: psl:Psta_0219 zinc finger CDGSH-type domain protein; PFAM: Iron sulphur-containing domain, CDGSH-type; SPTR: uncharacterized protein; PFAM: Iron-binding zinc finger CDGSH type YP_004271618.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: hch:HCH_01006 permease; PFAM: Uncharacterised protein family UPF0118; SPTR: Predicted permease; PFAM: Domain of unknown function DUF20 YP_004271619.1 COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: plm:Plim_4145 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: ribose-phosphate pyrophosphokinase; TIGRFAM: phosphoribosyl pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004271620.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078: IPR001608; KEGG: fnu:FN0561 proline synthetase associated protein; PFAM: alanine racemase, N-terminal; SPTR: uncharacterized protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004271621.1 COGs: COG0539 ribosomal protein S1; InterPro IPR003029; KEGG: plm:Plim_3572 RNA binding S1 domain protein; PFAM: ribosomal protein S1, RNA binding domain; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004271622.1 COGs: COG0177 endoIII-related endonuclease; InterPro IPR005759: IPR003265; KEGG: plm:Plim_0613 endonuclease III; PFAM: HhH-GPD domain; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: endonuclease III; TIGRFAM: endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004271623.1 COGs: COG0547 anthranilate phosphoribosyltransferase; HAMAP: anthranilate phosphoribosyl transferase; InterPro IPR005940: IPR017459: IPR000312; KEGG: plm:Plim_0847 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; glycosyl transferase, family 3, N-terminal; PRIAM: anthranilate phosphoribosyltransferase; SPTR: anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyl transferase; PFAM: glycosyl transferase family, a/b domain; glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_004271624.1 InterPro IPR013766; KEGG: plm:Plim_2038 thioredoxin domain protein; PFAM: thioredoxin domain; SPTR: uncharacterized protein; PFAM: thioredoxin YP_004271625.1 COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; HAMAP: Thiazole biosynthesis; InterPro IPR008867; KEGG: plm:Plim_3633 thiazole biosynthesis protein; PFAM: Thiazole biosynthesis; SPTR: Thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG YP_004271626.1 InterPro IPR010035: IPR003749; KEGG: psa:PST_3984 thiamine biosynthesis protein ThiS; PFAM: thiamineS; SPTR: Sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_004271627.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR003148: IPR006037; KEGG: rba:RB8035 potassium transporter peripheral membrane component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TRK potassium uptake system protein (TrkA-2); PFAM: TrkA-N domain; TrkA-C domain YP_004271628.1 COGs: COG0135 phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: plm:Plim_4032 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_004271629.1 KEGG: sus:acid_5358 hypothetical protein; SPTR: uncharacterized protein YP_004271630.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: mmr:Mmar10_2357 beta-lactamase; PFAM: beta-lactamase-related; SPTR: beta-lactamase; PFAM: beta-lactamase YP_004271631.1 COGs: COG2071 glutamine amidotransferase; InterPro IPR011697; KEGG: plm:Plim_0813 peptidase C26; PFAM: peptidase C26; SPTR: Probable glutamine amidotransferase; PFAM: peptidase C26 YP_004271632.1 KEGG: plm:Plim_2759 hypothetical protein; SPTR: uncharacterized protein YP_004271634.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: plm:Plim_0090 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004271635.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: npu:Npun_R2398 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: histidine triad (HIT) protein; PFAM: HIT domain YP_004271636.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR000014: IPR013767: IPR013656: IPR003661: IPR 003594; KEGG: plm:Plim_1718 PAS sensor protein; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: PAS sensor protein; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004271637.1 InterPro IPR011521; KEGG: plm:Plim_1186 YTV domain protein; PFAM: YTV; SPTR: YTV domain protein; PFAM: YTV YP_004271638.1 COGs: COG0211 ribosomal protein L27; HAMAP: ribosomal protein L27; InterPro IPR001684; KEGG: rba:RB6770 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004271639.1 KEGG: plm:Plim_3836 hypothetical protein; SPTR: uncharacterized protein YP_004271640.1 COGs: COG1109 phosphomannomutase; InterPro IPR005844: IPR005845: IPR005843; KEGG: plm:Plim_1316 phosphoglucosamine mutase; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, C-terminal; PRIAM: phosphoglucosamine mutase; SPTR: phosphomannomutase (Pmm); PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004271641.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR017442: IPR019781: IPR020635: IPR002290: IPR 001680; KEGG: plm:Plim_0575 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; WD40 repeat, subgroup; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; WD40 repeat; SPTR: WD40-repeat containing protein; PFAM: protein kinase domain; WD domain, G-beta repeat YP_004271642.1 InterPro IPR001343; KEGG: plm:Plim_0574 hemagluttinin repeat-containing protein; SPTR: Hemagluttinin repeat-containing protein YP_004271644.1 KEGG: plm:Plim_0573 hypothetical protein; SPTR: uncharacterized protein YP_004271645.1 KEGG: rba:RB8107 hypothetical protein; SPTR: uncharacterized protein YP_004271646.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR003390; KEGG: psl:Psta_3542 protein of unknown function DUF147; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding YP_004271647.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR005904: IPR000836; KEGG: psl:Psta_1642 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004271648.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000253: IPR003018: IPR003594; KEGG: plm:Plim_0237 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; GAF; Forkhead-associated; SMART: ATPase-like, ATP-binding domain; GAF; Forkhead-associated; SPTR: Sensor protein atoS; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; FHA domain YP_004271649.1 COGs: COG0389 nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: mrb:Mrub_3025 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family YP_004271650.1 COGs: COG0261 ribosomal protein L21; HAMAP: ribosomal protein L21; InterPro IPR001787; KEGG: plm:Plim_0356 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004271651.1 COGs: COG1530 ribonuclease G and E; InterPro IPR004659: IPR003029: IPR019307; KEGG: plm:Plim_0357 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribosomal protein S1, RNA binding domain; SPTR: ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease E/G; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004271652.1 KEGG: rsl:RPSI07_3111 fumarylacetoacetate (FAA) hydrolase; SPTR: fumarylacetoacetate hydrolase YP_004271653.1 KEGG: hmu:Hmuk_3078 glycoside hydrolase family 2 sugar binding; SPTR: uncharacterized protein YP_004271654.1 COGs: COG0496 acid phosphatase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; InterPro IPR002828; KEGG: plm:Plim_1187 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_004271655.1 KEGG: plm:Plim_1288 hypothetical protein; SPTR: uncharacterized protein YP_004271656.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB7879 N-acetylgalactosamine-6-sulfate sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine-6-sulfate sulfatase; PFAM: Sulfatase YP_004271657.1 KEGG: plm:Plim_0078 hypothetical protein; SPTR: uncharacterized protein YP_004271658.1 KEGG: plm:Plim_0077 hypothetical protein; SPTR: uncharacterized protein YP_004271659.1 COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: plm:Plim_0076 type IV pilus assembly protein PilM; SPTR: Probable fimbrial assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM YP_004271660.1 COGs: COG0352 thiamine monophosphate synthase; HAMAP: thiamine monophosphate synthase; InterPro IPR003733; KEGG: plm:Plim_0604 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine monophosphate synthase; PFAM: thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_004271661.1 KEGG: plm:Plim_2982 hypothetical protein; SPTR: uncharacterized protein YP_004271662.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: psl:Psta_2217 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Probable IolI protein; PFAM: Xylose isomerase-like TIM barrel YP_004271663.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: plm:Plim_4038 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain YP_004271664.1 InterPro IPR006311: IPR012307; KEGG: sus:acid_4452 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004271665.1 KEGG: saq:Sare_2671 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3050) YP_004271666.1 COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: rrs:RoseRS_4025 NB-ARC domain-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: NB-ARC domain protein; PFAM: WD domain, G-beta repeat YP_004271667.1 COGs: COG1846 transcriptional regulators; InterPro IPR000835; KEGG: psl:Psta_3579 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR family transcriptional regulator protein; PFAM: MarR family YP_004271668.1 KEGG: mxa:MXAN_2785 sensory box histidine kinase/response regulator; SPTR: UvrABC system protein C YP_004271669.1 COGs: COG3463 membrane protein; InterPro IPR018650; KEGG: plm:Plim_1336 membrane protein-like protein; PFAM: protein of unknown function DUF2079, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2079) YP_004271670.1 COGs: COG1349 transcriptional regulators of sugar metabolism; InterPro IPR001034: IPR014036; KEGG: plm:Plim_1758 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Regulatory protein DeoR; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_004271671.1 COGs: COG4869 propanediol utilization protein; InterPro IPR008300; KEGG: plm:Plim_1757 propanediol utilization protein; PFAM: propanediol utilisation protein; SPTR: uncharacterized protein; PFAM: propanediol utilisation protein PduL YP_004271672.1 COGs: COG4577 carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: plm:Plim_1756 microcompartments protein; PFAM: Microcompartment protein, bacteria; SPTR: Probable ethanolamine utilization protein EutM; PFAM: BMC domain YP_004271673.1 COGs: COG4577 carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: plm:Plim_1755 microcompartments protein; PFAM: Microcompartment protein, bacteria; SPTR: Microcompartments protein; PFAM: BMC domain YP_004271674.1 COGs: COG0282 acetate kinase; InterPro IPR004372: IPR000890; KEGG: plm:Plim_1754 acetate kinase; PFAM: acetate/butyrate kinase; PRIAM: acetate kinase; SPTR: acetate kinase; TIGRFAM: acetate kinase; PFAM: acetokinase family; TIGRFAM: acetate kinase YP_004271675.1 COGs: COG4576 carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: plm:Plim_1753 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; PFAM: ethanolamine utilisation protein EutN/carboxysome YP_004271676.1 KEGG: plm:Plim_1752 hypothetical protein; SPTR: uncharacterized protein YP_004271677.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: plm:Plim_1751 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase; PRIAM: acetaldehyde dehydrogenase (acetylating); SPTR: aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase family YP_004271678.1 KEGG: fsu:Fisuc_2636 S23 ribosomal protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein YP_004271679.1 COGs: COG4576 carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: plm:Plim_1750 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: ethanolamine utilization protein EutN-like; PFAM: ethanolamine utilisation protein EutN/carboxysome YP_004271680.1 KEGG: plm:Plim_1749 hypothetical protein; SPTR: uncharacterized protein YP_004271681.1 InterPro IPR004992; KEGG: plm:Plim_1748 hypothetical protein; PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: uncharacterized protein; PFAM: ethanolamine utilisation protein EutN/carboxysome YP_004271682.1 COGs: COG0235 ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: plm:Plim_1747 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin, N-terminal; PRIAM: L-fuculose-phosphate aldolase; SPTR: L-fuculose-phosphate aldolase; PFAM: class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_004271683.1 KEGG: bwe:BcerKBAB4_5427 ATPase; SPTR: uncharacterized protein YP_004271684.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: plm:Plim_4014 ATPase AAA; PFAM: ATPase, AAA-3; SPTR: uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004271685.1 KEGG: plm:Plim_0529 hypothetical protein; SPTR: uncharacterized protein YP_004271686.1 KEGG: plm:Plim_2795 hypothetical protein; SPTR: uncharacterized protein YP_004271687.1 KEGG: plm:Plim_1979 hypothetical protein; SPTR: uncharacterized protein YP_004271688.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655: IPR013751: IPR013747; KEGG: plm:Plim_2221 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-(acyl carrier protein) synthase; TIGRFAM: beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004271689.1 COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721: IPR004821; KEGG: mta:Moth_0141 pantothenate synthetase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_004271690.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: plm:Plim_2253 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004271691.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: plm:Plim_2252 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271692.1 KEGG: cre:CHLREDRAFT_205673 hypothetical protein; SPTR: uncharacterized protein; PFAM: anti sigma-E protein RseA, N-terminal domain YP_004271693.1 KEGG: plm:Plim_1011 hypothetical protein; SPTR: uncharacterized protein YP_004271694.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB6599 arylsulfatase A; PFAM: Sulfatase; SPTR: Arylsulfatase A; PFAM: Sulfatase YP_004271695.1 COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB8085 hypothetical protein; SPTR: uncharacterized protein; tmRNA as predicted by Rfam (RF00023), score 159.15 YP_004271696.1 InterPro IPR006120; KEGG: psl:Psta_3401 hypothetical protein; PFAM: Resolvase, helix-turn-helix domain; SPTR: uncharacterized protein; PFAM: Helix-turn-helix domain of resolvase YP_004271697.1 KEGG: psl:Psta_3720 hypothetical protein; SPTR: uncharacterized protein YP_004271698.1 InterPro IPR006119; KEGG: ade:Adeh_2336 recombinase; PFAM: Resolvase, N-terminal; SPTR: Site-specific recombinase and resolvase superfamily protein; PFAM: Resolvase, N terminal domain YP_004271700.1 KEGG: acp:A2cp1_0083 CheA signal transduction histidine kinase; SPTR: uncharacterized protein YP_004271701.1 InterPro IPR001387; KEGG: pjd:Pjdr2_1921 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Restriction-modification system regulatory protein, ; PFAM: Helix-turn-helix YP_004271702.1 KEGG: msl:Msil_1737 amine oxidase; SPTR: Amine oxidase YP_004271703.1 KEGG: psl:Psta_3410 hypothetical protein; SPTR: uncharacterized protein YP_004271704.1 KEGG: dra:DR_2607 molybdenum cofactor biosynthesis protein D/E; SPTR: uncharacterized protein YP_004271705.1 KEGG: ngr:NAEGRDRAFT_73733 hypothetical protein; SPTR: uncharacterized protein YP_004271706.1 KEGG: ami:Amir_5873 ATP-dependent protease La; SPTR: uncharacterized protein YP_004271707.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: ele:Elen_1748 thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: thiamine biosynthesis protein ThiF; PFAM: ThiF family YP_004271708.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: psa:PST_3751 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004271709.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019856: IPR002729; KEGG: sat:SYN_02473 cytoplasmic protein; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated endonuclease Cas1, DVULG subtype; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, DVULG subtype; CRISPR-associated endonuclease Cas1 YP_004271710.1 COGs: COG3183 restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: dra:DR_1726 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Disrupted by IS8301 insertion; PFAM: HNH endonuclease YP_004271711.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: sat:SYN_02474 exonuclease N; SPTR: CRISPR-associated protein Cas4; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_004271712.1 COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482: IPR013418; KEGG: ddd:Dda3937_02860 CRISPR-associated protein, TM1801 family; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein, TM1801 family; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family YP_004271713.1 InterPro IPR010144; KEGG: dma:DMR_14370 hypothetical protein; PFAM: CRISPR-associated protein, Csd1-type; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csd1-type; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family YP_004271714.1 InterPro IPR013422: IPR010155: IPR021124; KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; PFAM: CRISPR-associated protein, Cas5; SPTR: CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5, N-terminal domain; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain YP_004271715.1 COGs: COG1203 helicase; InterPro IPR006483: IPR006474: IPR014001; KEGG: dvm:DvMF_1971 CRISPR-associated helicase Cas3; SMART: DEAD-like helicase, N-terminal; SPTR: CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_004271716.1 KEGG: ppp:PHYPADRAFT_76860 hypothetical protein; SPTR: Predicted protein; manually curated; PFAM: transposase DDE domain YP_004271717.1 InterPro IPR012902; KEGG: plm:Plim_1767 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271718.1 KEGG: sbi:SORBI_0010s007570 hypothetical protein; SPTR: LOC431925 protein YP_004271719.1 KEGG: noc:Noc_1818 type I secretion system ATPase, PrtD YP_004271720.1 COGs: COG0811 biopolymertransporter; KEGG: mbu:Mbur_2258 MotA/TolQ/ExbB proton channel; SPTR: uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004271721.1 COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: ppd:Ppro_1233 hypothetical protein; PFAM: protein of unknown function DUF2149; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2149) YP_004271722.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: mmh:Mmah_1176 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Conserved hypothetical secreted protein, CobN/Magnesium chelatase family; PFAM: CobN/Magnesium Chelatase YP_004271723.1 COGs: COG0370 Fe2+ transporter protein B; InterPro IPR002917: IPR011642; KEGG: plm:Plim_1888 nucleoside recognition domain protein; PFAM: nucleoside recognition; GTP-binding protein, HSR1-related; SPTR: nucleoside recognition domain protein; PFAM: Ferrous iron transporter B; nucleoside recognition YP_004271724.1 COGs: COG0492 thioredoxin reductase; KEGG: rba:RB13090 monooxygenase; SPTR: Probable monooxygenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004271725.1 KEGG: rba:RB4678 signal peptide; SPTR: uncharacterized protein YP_004271726.1 KEGG: rba:RB4679 signal peptide; SPTR: uncharacterized protein YP_004271727.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: gvi:glr3104 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Glr3104 protein; PFAM: ABC transporter YP_004271728.1 KEGG: gvi:glr3106 hypothetical protein; SPTR: Glr3106 protein; PFAM: Domain of unknown function (DUF3526) YP_004271729.1 KEGG: gvi:glr3105 hypothetical protein; SPTR: Glr3105 protein; PFAM: Domain of unknown function (DUF3526) YP_004271730.1 KEGG: tbd:Tbd_2253 permease; SPTR: permease YP_004271731.1 KEGG: cel:ZC404.1 hypothetical protein; SPTR: uncharacterized protein YP_004271732.1 InterPro IPR012902; KEGG: plm:Plim_3656 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271733.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004271734.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR003675; KEGG: psl:Psta_1550 abortive infection protein; PFAM: hypothetical protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family YP_004271735.1 InterPro IPR001845; KEGG: nhl:Nhal_2982 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family YP_004271736.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: plm:Plim_2817 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain YP_004271737.1 COGs: COG0226 ABC-type phosphate transporter periplasmic component; InterPro IPR005119; KEGG: nhl:Nhal_2981 phosphate binding protein; PFAM: LysR, substrate-binding; SPTR: phosphate binding protein; PFAM: LysR substrate binding domain; TIGRFAM: phosphate binding protein YP_004271738.1 COGs: COG0573 ABC-type phosphate transporter permease; InterPro IPR011864: IPR000515; KEGG: nhl:Nhal_2980 phosphate ABC transporter inner membrane subunit PstC; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: phosphate ABC transporter permease PstC YP_004271739.1 COGs: COG0581 ABC-type phosphate transporter permease; InterPro IPR005672: IPR000515; KEGG: nhl:Nhal_2979 phosphate ABC transporter inner membrane subunit PstA; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: phosphate transporter permease 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter permease protein PstA YP_004271740.1 COGs: COG1117 ABC-type phosphate transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: noc:Noc_0581 ABC transporter ATPase; PFAM: ABC transporter-like; PRIAM: phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter protein; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter ATP-binding protein YP_004271741.1 KEGG: rba:RB13088 hypothetical protein; SPTR: uncharacterized protein YP_004271742.1 COGs: COG1989 type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627; KEGG: plm:Plim_1574 peptidase A24A domain protein; PFAM: peptidase A24A, N-terminal; SPTR: peptidase A24A domain protein; PFAM: Bacterial peptidase A24 N-terminal domain YP_004271743.1 KEGG: cyt:cce_3240 hypothetical protein; SPTR: uncharacterized protein YP_004271744.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: rba:RB13099 ferric uptake regulation protein Fur; PFAM: ferric-uptake regulator; SPTR: Probable ferric uptake regulation protein Fur; PFAM: ferric uptake regulator family YP_004271745.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: mgi:Mflv_4127 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004271746.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: gbm:Gbem_2168 protein of unknown function DUF214; PFAM: protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004271747.1 KEGG: ppd:Ppro_3338 glycosyl transferase family protein; SPTR: uncharacterized protein YP_004271748.1 KEGG: rba:RB4992 signal peptide; SPTR: uncharacterized protein YP_004271749.1 COGs: COG0523 GTPase (G3E family); InterPro IPR003495: IPR011629; KEGG: hoh:Hoch_3017 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein/P47K; PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain YP_004271750.1 KEGG: aeh:Mlg_1476 hypothetical protein; SPTR: uncharacterized protein YP_004271752.1 KEGG: hha:Hhal_1491 hypothetical protein; SPTR: uncharacterized protein YP_004271753.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_14748 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase YP_004271754.1 KEGG: rba:RB1472 signal peptide; SPTR: uncharacterized protein YP_004271756.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB773 arylsulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulfatase; PFAM: Sulfatase YP_004271757.1 KEGG: pha:PSHAa1267 hypothetical protein; SPTR: hypothetical protein YP_004271758.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: plm:Plim_3791 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase family protein; PFAM: NAD dependent epimerase/dehydratase family YP_004271759.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: plm:Plim_3736 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004271760.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: syn:slr1085 hypothetical protein; PFAM: glycosyl transferase, group 1; SPTR: Slr1085 protein; PFAM: glycosyl transferases group 1 YP_004271761.1 COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease; InterPro IPR013525; KEGG: fba:FIC_00356 O-antigen export system, permease; PFAM: ABC transporter; SPTR: O-antigen export system, permease; PFAM: ABC transporter YP_004271762.1 COGs: COG1134 ABC-type polysaccharide/polyol phosphate transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: zpr:ZPR_1095 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004271763.1 KEGG: syn:sll0625 hypothetical protein; SPTR: Sll0625 protein; manually curated YP_004271764.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: cyt:cce_0242 glycosyl transferase, group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1; PFAM: glycosyl transferases group 1 YP_004271766.1 InterPro IPR002516; KEGG: mmb:Mmol_1031 glycosyl transferase family 11; PFAM: glycosyl transferase, family 11; SPTR: glycosyl transferase family 11; PFAM: glycosyl transferase family 11 YP_004271767.1 KEGG: naz:Aazo_4910 hypothetical protein; SPTR: uncharacterized protein; PFAM: glycosyltransferase family 10 (fucosyltransferase) YP_004271768.1 KEGG: reh:PHG326 hypothetical protein; SPTR: uncharacterized protein YP_004271769.1 InterPro IPR001173; KEGG: geo:Geob_1450 hypothetical protein; PFAM: glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: glycosyl transferase family 2 YP_004271770.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: cyn:Cyan7425_5192 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004271771.1 KEGG: nar:Saro_0670 hypothetical protein; SPTR: uncharacterized protein YP_004271772.1 KEGG: naz:Aazo_4908 hypothetical protein; SPTR: uncharacterized protein YP_004271773.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4909 group 1 glycosyl transferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase, group 1 family protein; PFAM: glycosyl transferases group 1 YP_004271774.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mar:MAE_49200 glycosyl transferase; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004271775.1 InterPro IPR013216; KEGG: npu:Npun_R6023 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: glycosyltransferase; PFAM: methyltransferase domain YP_004271776.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: naz:Aazo_4911 family 2 glycosyl transferase; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004271777.1 KEGG: bja:bll7572 hypothetical protein; SPTR: Bll7572 protein YP_004271778.1 KEGG: amr:AM1_5716 sulfotransferase; SPTR: uncharacterized protein YP_004271779.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cyc:PCC7424_5782 glycosyl transferase family 2; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004271780.1 KEGG: naz:Aazo_4912 hypothetical protein; SPTR: uncharacterized protein; PFAM: glycosyl transferase family 2 YP_004271781.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sfu:Sfum_3343 glycosyl transferase; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase, family 2; PFAM: glycosyl transferase family 2 YP_004271782.1 KEGG: sfu:Sfum_0783 hypothetical protein; SPTR: uncharacterized protein YP_004271783.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: cyn:Cyan7425_4958 glycosyl transferase group 1; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004271784.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4918 group 1 glycosyl transferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004271785.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4919 group 1 glycosyl transferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyl transferase group 1; PFAM: glycosyl transferases group 1 YP_004271786.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: min:Minf_0549 glycosyltransferase; PFAM: glycosyl transferase, group 1; SPTR: glycosyltransferase; PFAM: glycosyl transferases group 1 YP_004271787.1 InterPro IPR013424: IPR011449; KEGG: azl:AZL_f01550 hypothetical protein; PFAM: PEP-CTERM bacterial; SPTR: uncharacterized protein; TIGRFAM: PEP-CTERM anchor; TIGRFAM: PEP-CTERM exosortase interaction domain YP_004271788.1 InterPro IPR013426: IPR019127; KEGG: rba:RB2461 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: uncharacterized protein; TIGRFAM: Exosortase, EpsH; PFAM: transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase) YP_004271789.1 KEGG: rba:RB2460 hypothetical protein; SPTR: uncharacterized protein YP_004271790.1 COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: cyn:Cyan7425_4965 colanic acid biosynthesis acetyltransferase WcaF; PFAM: Bacterial transferase hexapeptide repeat; SPTR: acetyltransferase (isoleucine patch superfamily) YP_004271791.1 KEGG: dau:Daud_0467 hypothetical protein; SPTR: uncharacterized protein YP_004271792.1 InterPro IPR003848; KEGG: dau:Daud_0467 hypothetical protein; PFAM: protein of unknown function DUF218; SPTR: uncharacterized protein; PFAM: DUF218 domain YP_004271793.1 KEGG: rba:RB6480 polysaccharide biosynthesis protein; SPTR: Similar to polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis/export protein YP_004271794.1 KEGG: rba:RB6477 hypothetical protein; SPTR: uncharacterized protein YP_004271795.1 KEGG: mgm:Mmc1_1473 hypothetical protein; SPTR: uncharacterized protein YP_004271796.1 KEGG: vvi:100250396 hypothetical protein LOC100250396; SPTR: peptidoglycan-binding protein YP_004271797.1 InterPro IPR007016; KEGG: rba:RB1691 signal peptide; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: O-antigen ligase YP_004271798.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: rba:RB6472 undecaprenyl-phosphate N-acetylglucosaminyltransferase; PFAM: glycosyl transferase, family 4, conserved region; SPTR: undecaprenyl-phosphate N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 4 YP_004271799.1 InterPro IPR006645; KEGG: rba:RB1900 NusG-like protein- transcription activator; PFAM: transcription antitermination protein, NusG, N-terminal; SPTR: Probable NusG-like protein- transcription activator; PFAM: transcription termination factor nusG YP_004271800.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: toc:Toce_0511 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004271801.1 COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368: IPR001509; KEGG: ppd:Ppro_3405 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_004271802.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: plm:Plim_3874 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: non-specific protein-tyrosine kinase; SPTR: uncharacterized protein; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004271803.1 KEGG: xop:PXO_03184 hypothetical protein; SPTR: uncharacterized protein; PFAM: transmembrane exosortase (Exosortase_EpsH) YP_004271804.1 KEGG: rba:RB2460 hypothetical protein; SPTR: uncharacterized protein YP_004271805.1 InterPro IPR013424: IPR011449; KEGG: cyc:PCC7424_1707 peptidase domain protein; PFAM: PEP-CTERM bacterial; SPTR: uncharacterized protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM exosortase interaction domain YP_004271806.1 InterPro IPR012902; KEGG: plm:Plim_0304 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271807.1 KEGG: rba:RB11009 iron-uptake factor- FMN-dependent oxidoreductase; SPTR: Iron-uptake factor- FMN-dependent oxidoreductase YP_004271808.1 InterPro IPR019613; KEGG: smt:Smal_0985 hypothetical protein; PFAM: nickel transport complex, NikM subunit, transmembrane; SPTR: uncharacterized protein; PFAM: nickel uptake substrate-specific transmembrane region YP_004271809.1 COGs: COG3656 periplasmic protein; KEGG: rba:RB11011 hypothetical protein; SPTR: uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2271) YP_004271810.1 COGs: COG3295 conserved hypothetical protein; KEGG: rba:RB11013 hypothetical protein; SPTR: uncharacterized protein; PFAM: PepSY-associated TM helix YP_004271811.1 COGs: COG4607 ABC-type enterochelin transporter periplasmic component; InterPro IPR002491; KEGG: bmr:BMI_II671 iron compound ABC transporter periplasmic iron compound-binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein YP_004271812.1 InterPro IPR012902; KEGG: rba:RB11016 signal peptide; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271813.1 InterPro IPR006626; KEGG: rba:RB4862 pre-neck appendage protein; SPTR: uncharacterized protein YP_004271814.1 InterPro IPR006860: IPR006558; KEGG: rba:RB2842 hypothetical protein; PFAM: FecR protein; SMART: LamG-like jellyroll fold; SPTR: uncharacterized protein; PFAM: FecR protein YP_004271815.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014331: IPR007627; KEGG: psl:Psta_1165 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004271816.1 InterPro IPR006311: IPR010869; KEGG: rba:RB546 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271817.1 InterPro IPR011444; KEGG: rba:RB544 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271818.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: ote:Oter_2882 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel YP_004271819.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: rhi:NGR_b17970 oxidoreductase; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, C-terminal alpha/beta domain; oxidoreductase family, NAD-binding Rossmann fold YP_004271820.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; KEGG: rba:RB1272 hypothetical protein; SPTR: uncharacterized protein YP_004271821.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: rba:RB10655 transcription regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Probable transcription regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_004271822.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR003593; KEGG: sus:acid_0588 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core; SPTR: Sigma54 specific transcriptional regulator, Fis family; PFAM: Sigma-54 interaction domain YP_004271823.1 KEGG: vap:Vapar_4882 major facilitator superfamily MFS_1; SPTR: uncharacterized protein YP_004271824.1 COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: cyn:Cyan7425_1876 ribonuclease BN; PFAM: ribonuclease BN-related; SPTR: YihY family protein; PFAM: ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004271825.1 COGs: COG1802 transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: rba:RB8796 GntR family transcription regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Probable gntR-family transcription regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_004271826.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: dihydrodipicolinate synthase; InterPro IPR002220; KEGG: rba:RB8798 dihydrodipicolinate synthase DapA; PFAM: dihydrodipicolinate synthetase; PRIAM: dihydrodipicolinate synthase; SPTR: dihydrodipicolinate synthase DapA; PFAM: dihydrodipicolinate synthetase family YP_004271827.1 COGs: COG0591 Na+/proline symporter; InterPro IPR019900: IPR001734; KEGG: rba:RB8797 sodium iodide symporter; PFAM: Sodium/solute symporter; SPTR: Sodium iodide symporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter SSS family YP_004271828.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB6873 arylsulphatase A; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase., N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004271829.1 COGs: COG4692 neuraminidase (sialidase); InterPro IPR013517; KEGG: rba:RB8789 hypothetical protein; PFAM: FG-GAP; SPTR: uncharacterized protein; PFAM: FG-GAP repeat YP_004271830.1 InterPro IPR012902; KEGG: plm:Plim_0844 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271831.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: rba:RB912 ECF-family RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Probable ECF-like sigma factor SigE; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271832.1 InterPro IPR006860; KEGG: rba:RB2842 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004271833.1 InterPro IPR011444; KEGG: rba:RB3804 signal peptide; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271834.1 InterPro IPR006311: IPR010869; KEGG: rba:RB3808 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271835.1 COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: psl:Psta_0796 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family YP_004271836.1 InterPro IPR006626; KEGG: amr:AM1_3691 hypothetical protein; SPTR: uncharacterized protein YP_004271837.1 InterPro IPR006626; KEGG: cyh:Cyan8802_0130 hypothetical protein; SPTR: uncharacterized protein YP_004271838.1 KEGG: met:M446_3374 hypothetical protein; SPTR: uncharacterized protein YP_004271839.1 COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: met:M446_3373 glycosyl transferase family protein; PFAM: glycosyl transferase, family 2; SPTR: glycosyl transferase family 2; PFAM: glycosyl transferase family 2 YP_004271840.1 InterPro IPR019734; KEGG: plm:Plim_0926 hypothetical protein; SPTR: uncharacterized protein YP_004271841.1 InterPro IPR011944; KEGG: plm:Plim_0925 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein YP_004271842.1 KEGG: plm:Plim_0825 hypothetical protein; SPTR: uncharacterized protein YP_004271843.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: rba:RB11030 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP binding protein; PFAM: ABC transporter YP_004271844.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease; InterPro IPR003838; KEGG: rba:RB11033 ABC transporter integral membrane protein; PFAM: protein of unknown function DUF214, permase predicted; SPTR: ABC transporter integral membrane protein; PFAM: Predicted permease YP_004271845.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: rba:RB11030 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004271846.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease; InterPro IPR003838; KEGG: rba:RB11027 ABC transporter membrane protein; PFAM: protein of unknown function DUF214, permase predicted; SPTR: Probable ABC transporter integral membrane protein; PFAM: Predicted permease YP_004271847.1 InterPro IPR012902; KEGG: rba:RB11016 signal peptide; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271848.1 COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: bbe:BBR47_22170 hypothetical protein; PFAM: esterase; SPTR: uncharacterized protein; PFAM: esterase YP_004271849.1 KEGG: plm:Plim_0073 hypothetical protein; SPTR: uncharacterized protein YP_004271850.1 InterPro IPR012902; KEGG: plm:Plim_3724 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271851.1 InterPro IPR010869; KEGG: rba:RB12566 sulfatase; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271852.1 InterPro IPR011444; KEGG: rba:RB12567 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271853.1 COGs: COG1802 transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: plm:Plim_1958 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_004271854.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341: IPR013342; KEGG: dfe:Dfer_5256 mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase/muconate lactonizing enzyme, N-terminal; mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_004271855.1 KEGG: dfe:Dfer_5254 hypothetical protein; SPTR: uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase YP_004271856.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: bcv:Bcav_2975 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: uncharacterized protein; PFAM: dihydrodipicolinate synthetase family YP_004271857.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: ote:Oter_2672 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: general substrate transporter:Major facilitator superfamily protein; PFAM: Major Facilitator Superfamily YP_004271858.1 COGs: COG4977 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR000005; KEGG: rba:RB13139 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271859.1 COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: rba:RB8684 hypothetical protein; PFAM: protein of unknown function DUF1611; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1611) YP_004271860.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341: IPR013342; KEGG: sli:Slin_6349 mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; SPTR: mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_004271861.1 COGs: COG2071 glutamine amidotransferase; InterPro IPR011697; KEGG: cag:Cagg_3249 peptidase C26; PFAM: peptidase C26; SPTR: peptidase C26; PFAM: peptidase C26 YP_004271862.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rba:RB5208 biotin apo-protein ligase-related protein; PFAM: beta-lactamase-related; SPTR: Similar to biotin apo-protein ligase-related protein; PFAM: Biotin-protein ligase, N terminal; beta-lactamase YP_004271863.1 COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: swd:Swoo_3255 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family; TC 2.A.35 YP_004271864.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_1326 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271865.1 KEGG: rba:RB6923 hypothetical protein; SPTR: uncharacterized protein YP_004271866.1 InterPro IPR012902; KEGG: plm:Plim_3825 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271867.1 COGs: COG4977 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR002818: IPR000005; KEGG: bpy:Bphyt_4511 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain; SPTR: Probable transcriptional regulator; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271868.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transporter permease; InterPro IPR000515; KEGG: geo:Geob_1660 binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporters inner membrane component; SPTR: Binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporter inner membrane component YP_004271869.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components; InterPro IPR001638: IPR010067; KEGG: geo:Geob_1659 aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; SPTR: Aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; TIGRFAM: ABC transporter substrate-binding protein, aliphatic sulphonates; PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter substrate-binding protein, aliphatic sulfonates family YP_004271870.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transporter ATPase component; InterPro IPR003593: IPR003439; KEGG: geo:Geob_1661 ABC transporter; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004271871.1 COGs: COG0161 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814; KEGG: acr:Acry_1964 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III; PRIAM: beta-alanine--pyruvate transaminase; SPTR: Aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004271872.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: hoh:Hoch_2331 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: pyridoxine 4-dehydrogenase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004271873.1 InterPro IPR005079; KEGG: plm:Plim_0017 hypothetical protein; PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: uncharacterized protein; PFAM: acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_004271874.1 KEGG: plm:Plim_0034 biotin apo-protein ligase-related protein; SPTR: Biotin apo-protein ligase-related protein-like; PFAM: Biotin-protein ligase, N terminal YP_004271875.1 KEGG: plm:Plim_0034 biotin apo-protein ligase-related protein; SPTR: Biotin apo-protein ligase-related protein-like; PFAM: Biotin-protein ligase, N terminal YP_004271876.1 COGs: COG3565 dioxygenase of extradiol dioxygenase family; InterPro IPR004360; KEGG: ebi:EbC_30550 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase YP_004271877.1 KEGG: xca:xccb100_1801 1-phosphofructokinase YP_004271878.1 COGs: COG0405 gamma-glutamyltransferase; InterPro IPR000101; KEGG: gau:GAU_2335 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase; PRIAM: gamma-glutamyltransferase; SPTR: gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase YP_004271879.1 InterPro IPR011444: IPR000421; KEGG: rba:RB544 hypothetical protein; PFAM: protein of unknown function DUF1549; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; PFAM: F5/8 type C domain; protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271880.1 InterPro IPR006311: IPR010869; KEGG: psl:Psta_3488 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271881.1 InterPro IPR010869; KEGG: psl:Psta_2202 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271882.1 InterPro IPR011444: IPR000421; KEGG: rba:RB6511 hypothetical protein; PFAM: protein of unknown function DUF1549; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; PFAM: F5/8 type C domain; protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271883.1 COGs: COG2130 NADP-dependent oxidoreductase; InterPro IPR013149; KEGG: rba:RB10967 oxidoreductase; PFAM: alcohol dehydrogenase, zinc-binding; PRIAM: 2-alkenal reductase; SPTR: oxidoreductase; PFAM: Zinc-binding dehydrogenase YP_004271884.1 COGs: COG3828 conserved hypothetical protein; InterPro IPR013428: IPR013427: IPR003088; KEGG: rba:RB524 secreted glycosyl hydrolase; PFAM: cytochrome C, class I; SPTR: Probable secreted glycosyl hydrolase; TIGRFAM: membrane-bound dehydrogenase; Haem-binding domain, PFAM: cytochrome C; Trehalose utilisation; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004271885.1 KEGG: psl:Psta_0328 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: Bacterial Ig-like domain (group 1) YP_004271886.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271887.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: rba:RB8781 NADH-dependent oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: NADH-dependent oxidoreductase-possiblyglucose-fructose dependent oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004271888.1 KEGG: plm:Plim_3725 hypothetical protein; SPTR: uncharacterized protein YP_004271889.1 COGs: COG2165 type II secretory pathway pseudopilin PulG; InterPro IPR012902; KEGG: plm:Plim_4235 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004271890.1 COGs: COG1609 transcriptional regulators; InterPro IPR018060: IPR000005; KEGG: rba:RB522 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004271891.1 COGs: COG3622 hydroxypyruvate isomerase; InterPro IPR006311: IPR019546: IPR012307; KEGG: rbi:RB2501_05755 probable glyoxylate-induced protein; PFAM: Xylose isomerase, TIM barrel domain; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Probable glyoxylate-induced protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004271892.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1698 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: oxidoreductase; PFAM: oxidoreductase family, NAD-binding Rossmann fold YP_004271893.1 COGs: COG4188 dienelactone hydrolase; KEGG: psl:Psta_1703 dienelactone hydrolase-like protein; SPTR: uncharacterized protein; PFAM: isoform II YP_004271894.1 COGs: COG0412 Dienelactone hydrolase; KEGG: rba:RB745 carboxymethylenebutenolidase; PRIAM: carboxymethylenebutenolidase; SPTR: carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase family YP_004271895.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: psl:Psta_1250 permease; PFAM: protein of unknown function DUF318, transmembrane; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004271896.1 KEGG: psl:Psta_1251 hypothetical protein; SPTR: uncharacterized protein YP_004271897.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593: IPR011703; KEGG: plm:Plim_2237 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: MoxR-related protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004271898.1 InterPro IPR002931; KEGG: plm:Plim_2238 transglutaminase domain protein; PFAM: transglutaminase-like; SMART: transglutaminase-like; SPTR: transglutaminase; PFAM: transglutaminase-like superfamily YP_004271899.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); InterPro IPR002881; KEGG: psl:Psta_3998 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004271900.1 KEGG: ncr:NCU08961 hypothetical protein; SPTR: integral membrane protein YP_004271901.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR000014: IPR001610: IPR 017442: IPR013656: IPR013767; KEGG: rba:RB11334 serine/threonine-protein kinase; PFAM: serine/threonine-protein kinase-like domain; PAS fold-4; PAS fold; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PAS; PAC motif; SPTR: serine/threonine-protein kinase; TIGRFAM: PAS; PFAM: protein kinase domain; PAS fold; TIGRFAM: PAS domain S-box YP_004271902.1 COGs: COG3540 phosphodiesterase/alkaline phosphatase D; KEGG: rba:RB5813 alkaline phosphatase D; SPTR: Probable alkaline phosphatase D; PFAM: PhoD-like phosphatase YP_004271903.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB695 N-acetyl-galactosamine-6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: N-acetyl-galactosamine-6-sulfatase (GALNS); PFAM: Sulfatase YP_004271904.1 KEGG: rba:RB5008 signal peptide; SPTR: uncharacterized protein; PFAM: cellulase (glycosyl hydrolase family 5) YP_004271905.1 COGs: COG3005 nitrate/TMAO reductase membrane-bound tetraheme cytochrome C subunit; InterPro IPR017571: IPR005126; KEGG: rba:RB11167 small subunit of cytochrome C nitrite reductase; PFAM: NapC/NirT cytochrome C, N-terminal; SPTR: Small subunit of cytochrome C nitrite reductase; TIGRFAM: cytochrome C nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome C family, N-terminal region; TIGRFAM: cytochrome C nitrate reductase, small subunit YP_004271906.1 COGs: COG3303 formate-dependent nitrite reductase periplasmic cytochrome C552 subunit; InterPro IPR003321; KEGG: rba:RB11165 catalytic subunit of cytochrome C nitrite reductase; PFAM: cytochrome c552; PRIAM: nitrite reductase (cytochrome; ammonia-forming); SPTR: Catalytic subunit of cytochrome C nitrite reductase; PFAM: cytochrome C552 YP_004271907.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4638 arylsulphatase A; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Arylsulphatase A; PFAM: Sulfatase YP_004271908.1 KEGG: rba:RB12630 signal peptide; SPTR: uncharacterized protein YP_004271909.1 InterPro IPR010869; KEGG: rba:RB8440 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004271910.1 InterPro IPR011444; KEGG: psl:Psta_3360 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: Cis/trans isomerase-like protein; PFAM: protein of unknown function (DUF1549); Planctomycete cytochrome C; protein of unknown function (DUF1553) YP_004271911.1 COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284: IPR007627: IPR013249; KEGG: rba:RB555 ECF subfamily RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004271912.1 COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: neu:NE0971 hypothetical protein; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_004271913.1 COGs: COG4319 Ketosteroid isomerase homolog; InterPro IPR011944; KEGG: rba:RB563 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein YP_004271914.1 COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: rba:RB560 hypothetical protein; PFAM: YCII-related; SPTR: uncharacterized protein; PFAM: YCII-related domain YP_004271915.1 COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: bge:BC1002_1234 YCII-related protein; PFAM: YCII-related; SPTR: uncharacterized protein; PFAM: YCII-related domain YP_004271916.1 COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: rba:RB12227 integral membrane protein; PFAM: YCII-related; SPTR: Probable integral membrane protein; PFAM: YCII-related domain YP_004271917.1 COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: hoh:Hoch_2580 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004271918.1 KEGG: maq:Maqu_2891 hypothetical protein; SPTR: uncharacterized protein YP_004271919.1 COGs: COG3724 Succinylarginine dihydrolase; HAMAP: Succinylarginine dihydrolase; InterPro IPR007079; KEGG: cro:ROD_13121 N-succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase; PRIAM: N-succinylarginine dihydrolase; SPTR: N-succinylarginine dihydrolase; TIGRFAM: Succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase; TIGRFAM: succinylarginine dihydrolase YP_004271920.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR017649: IPR015590; KEGG: pst:PSPTO_1835 succinylglutamic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; PRIAM: succinylglutamate-semialdehyde dehydrogenase; SPTR: aldehyde dehydrogenase; TIGRFAM: Succinylglutamic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase family; TIGRFAM: succinylglutamic semialdehyde dehydrogenase YP_004271921.1 COGs: COG3138 arginine/ornithine N-succinyltransferase subunit beta; InterPro IPR007041; KEGG: ebi:EbC_18590 arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase Ast/AOST; PRIAM: arginine N-succinyltransferase; SPTR: arginine N-succinyltransferase; TIGRFAM: arginine N-succinyltransferase Ast/AOST; PFAM: arginine N-succinyltransferase subunit beta; TIGRFAM: arginine N-succinyltransferase; arginine and ornithine succinyltransferase subunits YP_004271922.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: wch:wcw_0833 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: acetylornithine transaminase; SPTR: Probable acetylornithine aminotransferase; PFAM: Aminotransferase class-III YP_004271923.1 COGs: COG0624 acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: sal:Sala_1939 hypothetical protein; PFAM: peptidase M20, dimerisation; peptidase M20; SPTR: uncharacterized protein; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain YP_004271924.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: ang:An07g01010 hypothetical protein; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Sulfatase; PFAM: Sulfatase YP_004271925.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638: IPR006158: IPR007197; KEGG: slt:Slit_2335 radical SAM protein; PFAM: radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB; SPTR: radical SAM protein; PFAM: radical SAM superfamily; B12 binding domain YP_004271926.1 KEGG: bfs:BF3710 hypothetical protein; SPTR: Prabable sialidase; PFAM: BNR/Asp-box repeat YP_004271927.1 COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase-related; InterPro IPR004525: IPR004364; KEGG: plm:Plim_0597 lysine--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); PRIAM: lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase-related; PFAM: tRNA synthetases class II (D, K and N); TIGRFAM: lysyl-tRNA synthetase-like protein GenX YP_004271928.1 KEGG: plm:Plim_1931 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004271929.1 KEGG: ypb:YPTS_1533 hypothetical protein; SPTR: peptidoglycan-binding protein YP_004271930.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR013346: IPR005144: IPR013509: IPR000788; KEGG: min:Minf_1076 oxygen-sensitive ribonucleotide reductase, subunit alpha fused to ATP-cone domains; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal; ATP-cone; SPTR: ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, subunit alpha; PFAM: ribonucleotide reductase, all-alpha domain; ATP cone domain; ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, subunit alpha YP_004271931.1 KEGG: rca:Rcas_4353 hypothetical protein; SPTR: uncharacterized protein YP_004271932.1 COGs: COG0208 ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: psl:Psta_1277 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase; SPTR: ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase, small chain YP_004271933.1 KEGG: plm:Plim_0668 hypothetical protein; SPTR: uncharacterized protein YP_004271934.1 KEGG: plm:Plim_2755 hypothetical protein; SPTR: uncharacterized protein YP_004271935.1 COGs: COG0689 RNase PH; HAMAP: ribonuclease phosphorolytic, bacterial-type; InterPro IPR002381: IPR001247: IPR015847; KEGG: plm:Plim_2745 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: ribonuclease PH; TIGRFAM: ribonuclease phosphorolytic, bacterial-type; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_004271936.1 InterPro IPR011701; KEGG: plm:Plim_2019 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004271937.1 COGs: COG0052 ribosomal protein S2; InterPro IPR005706: IPR001865; KEGG: plm:Plim_3194 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004271938.1 COGs: COG0264 translation elongation factor Ts; HAMAP: translation elongation factor EFTs/EF1B; InterPro IPR001816: IPR000449: IPR014039; KEGG: plm:Plim_3193 translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: translation elongation factor Ts; TIGRFAM: translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004271939.1 COGs: COG0528 Uridylate kinase; InterPro IPR015963: IPR001048; KEGG: plm:Plim_3192 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_004271940.1 COGs: COG0233 ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; InterPro IPR002661: IPR015998; KEGG: plm:Plim_3273 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004271941.1 KEGG: plm:Plim_3909 hypothetical protein; SPTR: uncharacterized protein YP_004271942.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: plm:Plim_3872 metal-dependent hydrolase HDOD; PFAM: metal-dependent hydrolase HDOD; SPTR: metal-dependent hydrolase HDOD; PFAM: HDOD domain YP_004271943.1 COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: plm:Plim_3873 metal-dependent hydrolase HDOD; PFAM: metal-dependent hydrolase HDOD; SPTR: uncharacterized protein; PFAM: HDOD domain YP_004271944.1 COGs: COG2518 protein-L-isoaspartate carboxylmethyltransferase; HAMAP: protein-L-isoaspartate O-methyltransferase; InterPro IPR000682; KEGG: gem:GM21_3266 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004271945.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610: IPR001667: IPR003156; KEGG: plm:Plim_0674 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SPTR: Single-strand DNA-specific exonuclease; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004271946.1 InterPro IPR013427: IPR010496: IPR003088; KEGG: plm:Plim_3308 heme-binding protein; PFAM: protein of unknown function DUF1080; cytochrome C, class I; SPTR: Heme-binding protein; TIGRFAM: Haem-binding domain, PFAM: cytochrome C; Domain of Unknown Function (DUF1080); TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type YP_004271947.1 COGs: COG1080 phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR006318: IPR008731: IPR008279: IPR000121; KEGG: plm:Plim_0359 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; PRIAM: phosphoenolpyruvate--protein phosphotransferase; SPTR: phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase YP_004271948.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: dihydrodipicolinate synthase; InterPro IPR002220; KEGG: psl:Psta_0546 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase family YP_004271949.1 KEGG: pde:Pden_4254 hypothetical protein; SPTR: uncharacterized protein YP_004271950.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268: IPR006218; KEGG: rba:RB7096 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: AroA(G) protein (phospho-2-dehydro-3-deoxyheptonate aldolase / chorismate mutase); TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004271951.1 COGs: COG0149 triosephosphate isomerase; InterPro IPR000652; KEGG: plm:Plim_2049 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: triose-phosphate isomerase; SPTR: triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004271952.1 InterPro IPR004692; KEGG: psl:Psta_3127 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004271953.1 COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR005229: IPR013527: IPR013551; KEGG: psl:Psta_3126 domain of unknown function DUF1732; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255 YP_004271954.1 COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR008145: IPR017665: IPR008144; KEGG: plm:Plim_2052 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004271955.1 HAMAP: DNA-directed RNA polymerase, omega subunit; InterPro IPR003716; KEGG: plm:Plim_2053 DNA-directed RNA polymerase, omega subunit; SPTR: DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_004271956.1 COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382; KEGG: plm:Plim_2054 phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: Flavoprotein; PFAM: Flavoprotein YP_004271957.1 KEGG: plm:Plim_0448 hypothetical protein; SPTR: uncharacterized protein YP_004271958.1 KEGG: gfo:GFO_3228 coproporphyrinogen III oxidase; SPTR: coproporphyrinogen III oxidase YP_004271959.1 KEGG: mav:MAV_3056 linear gramicidin synthetase subunit D; SPTR: uncharacterized protein YP_004271960.1 COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: plm:Plim_0195 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: virulence factor; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_004271961.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR013766; KEGG: plm:Plim_2205 hypothetical protein; PFAM: thioredoxin domain; SPTR: protein disulphide isomerase; PFAM: protein of unknown function, DUF255 YP_004271962.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022: IPR002627; KEGG: plm:Plim_1559 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_004271963.1 COGs: COG2200 FOG: EAL domain; InterPro IPR000253: IPR001633; KEGG: rba:RB12766 hypothetical protein; PFAM: Diguanylate phosphodiesterase, predicted; Forkhead-associated; SMART: Diguanylate phosphodiesterase, predicted; Forkhead-associated; SPTR: uncharacterized protein; PFAM: EAL domain; FHA domain YP_004271964.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113; KEGG: psl:Psta_2649 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase C-terminal; FAD linked oxidase N-terminal; PRIAM: D-lactate dehydrogenase; SPTR: glycolate oxidase subunit; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase subunit GlcD YP_004271965.1 KEGG: amd:AMED_1294 hypothetical protein YP_004271966.1 COGs: COG1359 conserved hypothetical protein; InterPro IPR007138; KEGG: tet:TTHERM_00268280 antibiotic biosynthesis monooxygenase family protein; PFAM: antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: antibiotic biosynthesis monooxygenase YP_004271967.1 COGs: COG0655 Multimeric flavodoxin WrbA; KEGG: noc:Noc_1423 hypothetical protein; SPTR: uncharacterized protein; PFAM: NADPH-dependent FMN reductase YP_004271968.1 COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; KEGG: plm:Plim_3358 FAD dependent oxidoreductase; SPTR: uncharacterized protein; PFAM: FAD dependent oxidoreductase YP_004271969.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_2492 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Mitogen-activated protein kinase kinase kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain; HEAT repeat YP_004271970.1 InterPro IPR006626; KEGG: sus:acid_5490 hypothetical protein; SPTR: uncharacterized protein YP_004271971.1 COGs: COG0626 cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: plm:Plim_0611 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine (thiol)-lyase YP_004271972.1 KEGG: plm:Plim_0307 hypothetical protein; SPTR: uncharacterized protein YP_004271973.1 COGs: COG2322 membrane protein; InterPro IPR003782: IPR007352; KEGG: plm:Plim_0216 protein of unknown function DUF420; PFAM: protein of unknown function DUF420; Copper chaperone SCO1/SenC; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF420); SCO1/SenC YP_004271974.1 InterPro IPR011743; KEGG: plm:Plim_2953 caa(3)-type oxidase subunit IV; SPTR: Caa(3)-type oxidase subunit IV; TIGRFAM: Caa(3)-type oxidase subunit IV; TIGRFAM: caa(3)-type oxidase subunit IV YP_004271975.1 KEGG: plm:Plim_2834 hypothetical protein; SPTR: uncharacterized protein YP_004271976.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR004467: IPR000836; KEGG: plm:Plim_1455 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_004271977.1 KEGG: psl:Psta_1648 hypothetical protein; SPTR: uncharacterized protein YP_004271978.1 COGs: COG0263 glutamate 5-kinase; HAMAP: glutamate 5-kinase; InterPro IPR002478: IPR005715: IPR001048; KEGG: plm:Plim_1538 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: glutamate 5-kinase; TIGRFAM: glutamate 5-kinase, ProB-related; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase YP_004271979.1 KEGG: plm:Plim_3251 hypothetical protein; SPTR: uncharacterized protein YP_004271980.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: plm:Plim_1474 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase; PRIAM: aldehyde dehydrogenase (NAD(+)); SPTR: Ketoglutarate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase family YP_004271981.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: plm:Plim_3400 serine/threonine protein kinase-related protein; PFAM: serine/threonine-protein kinase-like domain; PRIAM: non-specific protein-tyrosine kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase-related protein; PFAM: protein kinase domain YP_004271982.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: plm:Plim_1689 ATPase AAA; PFAM: ATPase, AAA-3; SPTR: MoxR protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004271983.1 COGs: COG1538 Outer membrane protein; KEGG: plm:Plim_2028 outer membrane protein-like protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004271984.1 KEGG: psl:Psta_2757 secretion protein HlyD; SPTR: Probable toxin secretion protein YP_004271985.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; KEGG: psl:Psta_2756 ABC transporter related protein; PRIAM: Xenobiotic-transporting ATPase; SPTR: Probable toxin secretion ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane region YP_004271986.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: rba:RB12400 hypothetical protein; PFAM: peptidase S54, rhomboid; SPTR: uncharacterized protein; PFAM: Rhomboid family YP_004271987.1 KEGG: afm:AFUA_5G03910 mitochondrial fusion protein (Ugo1); SPTR: uncharacterized protein YP_004271989.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: cat:CA2559_06995 hypothetical protein; PFAM: protein of unknown function DUF421; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF421) YP_004271990.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: gur:Gura_2811 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC/SapB transporter; PFAM: MgtC family YP_004271991.1 COGs: COG3152 membrane protein; InterPro IPR008523; KEGG: cpb:Cphamn1_0612 protein of unknown function DUF805; PFAM: protein of unknown function DUF805; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF805) YP_004271992.1 COGs: COG3152 membrane protein; InterPro IPR008523; KEGG: cpb:Cphamn1_0612 protein of unknown function DUF805; PFAM: protein of unknown function DUF805; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF805) YP_004271993.1 COGs: COG3152 membrane protein; InterPro IPR008523; KEGG: cro:ROD_47701 hypothetical protein; PFAM: protein of unknown function DUF805; SPTR: membrane protein; PFAM: protein of unknown function (DUF805) YP_004271994.1 COGs: COG3152 membrane protein; InterPro IPR008523; KEGG: zpr:ZPR_2203 aminopeptidase C, PFAM: protein of unknown function DUF805; SPTR: integral membrane protein; PFAM: protein of unknown function (DUF805) YP_004271995.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: DNA ligase; InterPro IPR013840: IPR003583: IPR001357: IPR001679: IPR 013839: IPR004150: IPR004149; KEGG: plm:Plim_2844 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; SPTR: DNA ligase; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent YP_004271996.1 KEGG: dmo:Dmoj_GI21568 GI21568 gene product from transcript GI21568-RA; SPTR: GI21568 YP_004271997.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: psl:Psta_2459 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1; SPTR: alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004271998.1 COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: cyc:PCC7424_2285 TatD-related deoxyribonuclease; PFAM: deoxyribonuclease, TatD-related; SPTR: uncharacterized protein; PFAM: TatD related DNase YP_004271999.1 COGs: COG3823 glutamine cyclotransferase; InterPro IPR007788; KEGG: plm:Plim_1300 glutamine cyclotransferase; PFAM: glutamine cyclotransferase; SPTR: glutamine cyclotransferase; PFAM: glutamine cyclotransferase YP_004272000.1 COGs: COG0811 biopolymertransporter; InterPro IPR002898; KEGG: psl:Psta_0967 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable TolQ-type transport protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004272001.1 COGs: COG0848 biopolymertransporter; InterPro IPR003400; KEGG: psl:Psta_0966 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: Probable Biopolymer transport exbD protein; PFAM: biopolymertransporter ExbD/TolR YP_004272002.1 InterPro IPR003400; KEGG: psl:Psta_0965 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR YP_004272003.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR015991: IPR001130; KEGG: plm:Plim_3632 hydrolase, TatD family; PFAM: deoxyribonuclease, TatD-related; SPTR: deoxyribonuclease yabD; TIGRFAM: deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004272004.1 COGs: COG2206 HD-GYP domain; InterPro IPR003607: IPR006674; KEGG: psl:Psta_2798 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004272005.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: plm:Plim_2303 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004272006.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; KEGG: xop:PXO_02708 malonyl CoA-acyl carrier protein transacylase; SPTR: polyketide synthase YP_004272007.1 COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR020603: IPR003444; KEGG: plm:Plim_1794 protein of unknown function UPF0040; PFAM: MraZ domain; SPTR: protein mraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004272008.1 KEGG: mcc:695289 SH3 domain containing ring finger 3; SPTR: uncharacterized protein GLEAN_07861 YP_004272009.1 KEGG: vei:Veis_0392 peptidase M48, Ste24p; SPTR: peptidase M48, Ste24p YP_004272010.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR013428: IPR001087; KEGG: psl:Psta_0895 membrane-bound dehydrogenase domain protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase; TIGRFAM: membrane-bound dehydrogenase domain YP_004272011.1 KEGG: psl:Psta_1501 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1570) YP_004272012.1 InterPro IPR010093: IPR000551; KEGG: plm:Plim_2648 prophage CP4-57 regulatory; PFAM: HTH transcriptional regulator, MerR; SPTR: prophage CP4-57 regulator; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: prophage CP4-57 regulator protein (AlpA); TIGRFAM: DNA binding domain, excisionase family YP_004272013.1 KEGG: plm:Plim_2011 hypothetical protein; SPTR: uncharacterized protein YP_004272014.1 KEGG: plm:Plim_2010 hypothetical protein; SPTR: uncharacterized protein YP_004272015.1 COGs: COG0286 type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: mhu:Mhun_2789 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase; PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_004272016.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: bcj:BCAL0418 type I restriction enzyme specificity protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: type I restriction enzyme specificity protein; manually curated; PFAM: type I restriction modification DNA specificity domain YP_004272017.1 KEGG: bcj:BCAL0419 hypothetical protein; SPTR: uncharacterized protein YP_004272018.1 COGs: COG0610 type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001: IPR004473: IPR007409: IPR006935; KEGG: bcj:BCAL0420 type I restriction component of type I restriction-modification system; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: type I restriction component of type I restriction-modification system; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Domain of unknown function (DUF3387); type I restriction enzyme R protein N terminus (HSDR_N); type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family YP_004272019.1 KEGG: mgr:MGG_02569 hypothetical protein; SPTR: uncharacterized protein YP_004272020.1 KEGG: sus:acid_4247 hypothetical protein; SPTR: uncharacterized protein; PFAM: NPCBM/NEW2 domain YP_004272021.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: gfo:GFO_0846 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: GGDEF domain-like protein; PFAM: Response regulator receiver domain YP_004272022.1 KEGG: mmu:17235 sperm mitochondria-associated cysteine-rich protein; SPTR: Sperm mitochondrial-associated cysteine-rich protein YP_004272023.1 InterPro IPR012902; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272024.1 KEGG: srm:SRM_01223 hypothetical protein; SPTR: uncharacterized protein YP_004272025.1 KEGG: psl:Psta_3367 pyrrolo-quinoline quinone; SPTR: pyrrolo-quinoline quinone YP_004272026.1 COGs: COG0048 ribosomal protein S12; InterPro IPR005679: IPR006032; KEGG: plm:Plim_0473 ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial-type; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; ribosomal protein S23 (S12) YP_004272027.1 COGs: COG0049 ribosomal protein S7; InterPro IPR005717: IPR000235; KEGG: plm:Plim_0474 ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004272028.1 COGs: COG2138 conserved hypothetical protein; InterPro IPR002762; KEGG: plm:Plim_2903 cobalamin (vitamin B12) biosynthesis CbiX protein; PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiX protein; PFAM: CbiX YP_004272029.1 KEGG: bwe:BcerKBAB4_1992 Excalibur domain-containing protein; SPTR: uncharacterized protein YP_004272030.1 COGs: COG0515 serine/threonine protein kinase; InterPro IPR020635: IPR002290: IPR017442; KEGG: psl:Psta_2774 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; PRIAM: Cyclin-dependent kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR: serine/threonine protein kinase; PFAM: protein kinase domain YP_004272031.1 KEGG: psl:Psta_2773 FHA domain containing protein; SPTR: FHA domain containing protein YP_004272032.1 KEGG: plm:Plim_0226 signal peptide-containing protein; SPTR: uncharacterized protein YP_004272033.1 KEGG: psl:Psta_0856 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3467) YP_004272034.1 COGs: COG1989 type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627; KEGG: geo:Geob_3081 peptidase A24A domain protein; PFAM: peptidase A24A, N-terminal; SPTR: peptidase A24A domain protein; PFAM: Bacterial peptidase A24 N-terminal domain YP_004272035.1 KEGG: psl:Psta_3008 hypothetical protein; SPTR: uncharacterized protein YP_004272036.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; KEGG: plm:Plim_1971 UDP-glucose--hexose-1-phosphate uridylyltransferase; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: UDP-glucose--hexose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_004272037.1 COGs: COG1449 alpha-amylase/alpha-mannosidase; InterPro IPR004300: IPR015178: IPR015179; KEGG: psl:Psta_3212 4-alpha-glucanotransferase; PFAM: alpha-amylase/4-alpha-glucanotransferase, prokaryotic; glycoside hydrolase, family 57, core; Domain of unknown function DUF1925; PRIAM: 4-alpha-glucanotransferase; SPTR: alpha-amylase; PFAM: Domain of unknown function (DUF1925); glycosyl hydrolase family 57; Domain of unknown function (DUF1926) YP_004272038.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: plm:Plim_3874 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: non-specific protein-tyrosine kinase; SPTR: uncharacterized protein; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004272039.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: rrs:RoseRS_2395 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family YP_004272040.1 InterPro IPR005181; KEGG: rba:RB10048 sialic acid-specific 9-O-acetylesterase; PFAM: protein of unknown function DUF303, acetylesterase PRIAM: Sialate O-acetylesterase; SPTR: Sialic acid-specific 9-O-acetylesterase; PFAM: Domain of unknown function (DUF303) YP_004272041.1 COGs: COG4299 conserved hypothetical protein; KEGG: sli:Slin_0417 protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1624) YP_004272042.1 KEGG: msv:Mesil_2814 hypothetical protein; SPTR: protein containing ChW-repeats YP_004272043.1 KEGG: pme:NATL1_06451 hypothetical protein; SPTR: uncharacterized protein YP_004272044.1 KEGG: dol:Dole_2930 hypothetical protein; SPTR: uncharacterized protein YP_004272045.1 InterPro IPR019734; KEGG: ter:Tery_1102 tetratricopeptide TPR_2; SPTR: Tetratricopeptide TPR_2 YP_004272046.1 KEGG: cwo:Cwoe_0733 hypothetical protein; SPTR: uncharacterized protein YP_004272047.1 COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: chu:CHU_2066 hypothetical protein; PFAM: protein of unknown function DUF892; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF892) YP_004272048.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: tkm:TK90_2453 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase; PRIAM: succinate-semialdehyde dehydrogenase (NAD(P)(+)); SPTR: aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase family YP_004272049.1 KEGG: rba:RB11176 hypothetical protein; SPTR: uncharacterized protein YP_004272050.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: gfo:GFO_1336 nucleotide-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family YP_004272051.1 InterPro IPR012932; KEGG: rba:RB2885 hypothetical protein; PFAM: Vitamin K epoxide reductase; SPTR: uncharacterized protein; PFAM: Vitamin K epoxide reductase family YP_004272052.1 KEGG: rba:RB2886 hypothetical protein; SPTR: uncharacterized protein; PFAM: SPW repeat YP_004272053.1 KEGG: ang:An12g04630 hypothetical protein; SPTR: Function: PVA is used for the enzymatic hydrolysis of penicillin V YP_004272054.1 COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: rxy:Rxyl_0655 zinc/iron permease; PFAM: Zinc/iron permease; SPTR: Probable GufA protein; PFAM: ZIP Zinc transporter YP_004272055.1 KEGG: sli:Slin_6024 hypothetical protein; SPTR: uncharacterized protein YP_004272056.1 COGs: COG3360 conserved hypothetical protein; InterPro IPR009923; KEGG: bph:Bphy_1287 hypothetical protein; PFAM: Dodecin flavoprotein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1458) YP_004272057.1 InterPro IPR001763; KEGG: llo:LLO_1048 rhodanese domain protein; SMART: Rhodanese-like; SPTR: Rhodanese-like domain protein; PFAM: Rhodanese-like domain YP_004272058.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: ote:Oter_0043 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SPTR: Response regulator receiver domain protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004272059.1 KEGG: ava:Ava_4088 hypothetical protein; SPTR: uncharacterized protein YP_004272060.1 KEGG: noc:Noc_2887 hypothetical protein; SPTR: uncharacterized protein YP_004272061.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837; KEGG: smd:Smed_4761 sodium/calcium exchanger membrane region; PFAM: Sodium/calcium exchanger membrane region; SPTR: uncharacterized protein; PFAM: Sodium/calcium exchanger protein YP_004272062.1 KEGG: fba:FIC_01594 hypothetical protein; SPTR: uncharacterized protein YP_004272063.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821: IPR013512: IPR013644; KEGG: plm:Plim_3364 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004272064.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478: IPR008915; KEGG: plm:Plim_3363 peptidase M50; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF; SPTR: peptidase M50; PFAM: peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_004272065.1 KEGG: plm:Plim_4224 sulfate transporter/antisigma-factor antagonist STAS; SPTR: sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain YP_004272066.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan branching enzyme, core region; InterPro IPR006589: IPR006407: IPR004193: IPR006047: IPR 006048; KEGG: plm:Plim_2229 1,4-alpha-glucan branching enzyme; PFAM: alpha-amylase, C-terminal all beta; glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: 1,4-alpha-glucan-branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; PFAM: alpha amylase, C-terminal all-beta domain; alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_004272067.1 COGs: COG1167 transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: emi:Emin_0421 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/II; PRIAM: Aromatic-amino-acid transaminase; SPTR: Aminotransferase; PFAM: Aminotransferase class I and II YP_004272069.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; HAMAP: nitrile oxidoreductase, NADPH-dependent, QueF; InterPro IPR016856: IPR020602; KEGG: plm:Plim_2723 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase; TIGRFAM: nitrile oxidoreductase, NADPH-dependent, QueF; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase YP_004272070.1 InterPro IPR001434; KEGG: plm:Plim_0685 conserved repeat domain protein; SPTR: 60 kDa outer membrane protein; TIGRFAM: protein of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004272071.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284: IPR007627: IPR007630; KEGG: plm:Plim_0381 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; Mor transcription activator family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004272072.1 COGs: COG3782 conserved hypothetical protein; InterPro IPR015003; KEGG: rba:RB3410 hypothetical protein; PFAM: protein of unknown function DUF1853; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1853) YP_004272073.1 COGs: COG1639 signal transduction protein; InterPro IPR001789: IPR013976; KEGG: rmr:Rmar_2064 metal dependent phosphohydrolase; PFAM: Signal transduction response regulator, receiver domain; metal-dependent hydrolase HDOD; SMART: Signal transduction response regulator, receiver domain; SPTR: GGDEF domain-like protein; PFAM: Response regulator receiver domain; HDOD domain YP_004272074.1 COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; HAMAP: ribonucleotide reductase regulator NrdR-like; InterPro IPR003796: IPR005144; KEGG: plm:Plim_4090 ATP-cone domain protein; PFAM: ATP-cone; SPTR: transcriptional repressor nrdR; TIGRFAM: ribonucleotide reductase regulator NrdR-like; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_004272075.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR004739: IPR001674: IPR000991; KEGG: plm:Plim_0163 GMP synthase, large subunit; PFAM: GMP synthase, C-terminal; glutamine amidotransferase class-I, C-terminal; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: glutamine amidotransferase class-I; GMP synthase C terminal domain; Asparagine synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or subunit beta; GMP synthase (glutamine-hydrolyzing), N-terminal domain or subunit alpha YP_004272076.1 InterPro IPR002110; KEGG: tpe:Tpen_1284 ankyrin; PFAM: ankyrin repeat; SMART: ankyrin repeat; SPTR: ankyrin; PFAM: ankyrin repeat YP_004272077.1 COGs: COG0137 argininosuccinate synthase; HAMAP: argininosuccinate synthase; InterPro IPR001518; KEGG: plm:Plim_4163 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: argininosuccinate synthase; SPTR: argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_004272078.1 COGs: COG0768 cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: plm:Plim_4064 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; SPTR: cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding protein dimerisation domain YP_004272079.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311: IPR012307; KEGG: rba:RB12844 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004272080.1 COGs: COG2378 transcriptional regulator protein; KEGG: plm:Plim_3146 hypothetical protein; SPTR: Helix-turn-helix type 11 domain protein; PFAM: HTH domain YP_004272081.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: rba:RB6818 sensory transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Probable sensory transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004272082.1 COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: polyribonucleotide nucleotidyltransferase; InterPro IPR004087: IPR012162: IPR001247: IPR015847: IPR 015848: IPR018111: IPR003029; KEGG: plm:Plim_0380 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; ribosomal protein S1, RNA binding domain; PRIAM: polyribonucleotide nucleotidyltransferase; SPTR: polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004272083.1 COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR005290: IPR000589; KEGG: plm:Plim_0379 ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004272084.1 InterPro IPR012902; KEGG: plm:Plim_2542 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272085.1 KEGG: plm:Plim_0073 hypothetical protein; SPTR: uncharacterized protein YP_004272086.1 COGs: COG3293 transposase and inactivated derivatives; KEGG: nwi:Nwi_3115 transposase; SPTR: transposase YP_004272087.1 COGs: COG3293 transposase and inactivated derivatives; InterPro IPR002559; KEGG: rsl:RPSI07_mp0251 transposase, IS4-like; PFAM: transposase, IS4-like; SPTR: transposase, IS4-like; PFAM: transposase DDE domain YP_004272089.1 COGs: COG0034 glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583: IPR000836; KEGG: plm:Plim_1264 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase (Precursor); PFAM: phosphoribosyl transferase domain; glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_004272090.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: plm:Plim_1188 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: uncharacterized protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004272091.1 COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR001537; KEGG: plm:Plim_1764 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA methylase family; TIGRFAM: rRNA methylase, , group 3 YP_004272092.1 KEGG: tgo:TGME49_065500 voltage gated chloride channel domain-containing protein; SPTR: Voltage gated chloride channel domain-containing protein YP_004272093.1 COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB8639 hypothetical protein; SPTR: pyrrolo-quinoline quinone YP_004272094.1 KEGG: plm:Plim_3481 hypothetical protein; SPTR: uncharacterized protein YP_004272095.1 KEGG: rpc:RPC_4105 methyl-accepting chemotaxis sensory transducer; SPTR: uncharacterized protein YP_004272096.1 KEGG: plm:Plim_1205 hypothetical protein; SPTR: uncharacterized protein YP_004272097.1 InterPro IPR012307; KEGG: plm:Plim_1798 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel YP_004272098.1 KEGG: plm:Plim_1773 hypothetical protein; SPTR: LigA YP_004272099.1 COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: plm:Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004272100.1 InterPro IPR002035; KEGG: plm:Plim_3001 von Willebrand factor A; SMART: von Willebrand factor, type A; SPTR: uncharacterized protein YP_004272101.1 COGs: COG0597 Lipoprotein signal peptidase; HAMAP: peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: plm:Plim_3002 hypothetical protein; PFAM: peptidase A8, signal peptidase II; SPTR: uncharacterized protein; TIGRFAM: peptidase A8, signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_004272103.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: plm:Plim_0432 glycosyl transferase family 39; PFAM: glycosyl transferase, family 39; SPTR: glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004272104.1 COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: plm:Plim_0451 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: ribose-phosphate pyrophosphokinase; TIGRFAM: phosphoribosyl pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004272105.1 InterPro IPR006553: IPR001611; KEGG: ppp:PHYPADRAFT_60819 hypothetical protein; SPTR: Leucine-rich repeat domain protein YP_004272106.1 KEGG: dgr:Dgri_GH20224 GH20224 gene product from transcript GH20224-RA; SPTR: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; manually curated; PFAM: transposase DDE domain YP_004272107.1 KEGG: vvi:100242105 hypothetical protein LOC100242105; SPTR: Leucine-rich repeat domain protein YP_004272108.1 COGs: COG0605 superoxide dismutase; InterPro IPR019831: IPR019832; KEGG: afl:Aflv_0876 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; PRIAM: superoxide dismutase; SPTR: superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_004272109.1 COGs: COG0848 biopolymertransporter; InterPro IPR003400; KEGG: plm:Plim_1697 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: uncharacterized protein; PFAM: biopolymertransporter ExbD/TolR YP_004272110.1 COGs: COG0848 biopolymertransporter; InterPro IPR003400; KEGG: plm:Plim_1698 biopolymer transporter ExbD/TolR; PFAM: biopolymertransporter ExbD/TolR; SPTR: phospholipid/glycerol acyltransferase; PFAM: biopolymertransporter ExbD/TolR YP_004272111.1 KEGG: plm:Plim_1699 hypothetical protein; SPTR: uncharacterized protein YP_004272112.1 KEGG: psl:Psta_3182 hypothetical protein; SPTR: uncharacterized protein; PFAM: DinB family YP_004272113.1 KEGG: scl:sce3884 hypothetical protein; SPTR: uncharacterized protein YP_004272114.1 InterPro IPR012902; KEGG: plm:Plim_4238 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272115.1 KEGG: sus:acid_6938 hypothetical protein; SPTR: uncharacterized protein YP_004272116.1 InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272117.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transporter; InterPro IPR011659; KEGG: rbi:RB2501_12022 TolB protein; PFAM: WD40-like beta Propeller; SPTR: WD40-like beta Propeller; PFAM: WD40-like beta Propeller Repeat YP_004272118.1 KEGG: plm:Plim_2619 SH3 type 3 domain protein; SPTR: uncharacterized protein YP_004272119.1 KEGG: plm:Plim_3766 hypothetical protein; SPTR: uncharacterized protein YP_004272120.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: plm:Plim_3765 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004272121.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: plm:Plim_1956 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 transporter; PFAM: Major Facilitator Superfamily YP_004272122.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR000748: IPR006145; KEGG: plm:Plim_4141 pseudouridine synthase; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004272124.1 InterPro IPR011446; KEGG: rpa:RPA2015 hypothetical protein; PFAM: protein of unknown function DUF1551; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1551) YP_004272125.1 COGs: COG2609 pyruvate dehydrogenase complex dehydrogenase (E1) component; InterPro IPR004660; KEGG: plm:Plim_3532 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PRIAM: pyruvate dehydrogenase (acetyl-transferring); SPTR: pyruvate dehydrogenase E1 component; TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; PFAM: transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type YP_004272126.1 COGs: COG0508 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078; KEGG: plm:Plim_3533 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: dihydrolipoyllysine-residue acetyltransferase; SPTR: pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component and related enzyme; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form YP_004272127.1 COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258: IPR013027: IPR004099; KEGG: aba:acid345_2790 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: dihydrolipoyl dehydrogenase; SPTR: dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004272128.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333: IPR001433: IPR019480; KEGG: plm:Plim_4143 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding; oxidoreductase, FAD-binding domain; SPTR: oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; oxidoreductase NAD-binding domain YP_004272129.1 KEGG: mxa:MXAN_5569 hypothetical protein; SPTR: uncharacterized protein YP_004272130.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: psl:Psta_3114 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein YP_004272131.1 KEGG: plm:Plim_1272 hypothetical protein; SPTR: uncharacterized protein YP_004272132.1 COGs: COG0167 dihydroorotate dehydrogenase; InterPro IPR005720: IPR012135; KEGG: plm:Plim_0772 dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase, class 1/ 2; PRIAM: dihydroorotate oxidase; SPTR: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, class 1, core; PFAM: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_004272133.1 COGs: COG0180 tryptophanyl-tRNA synthetase; InterPro IPR002306: IPR002305; KEGG: plm:Plim_0771 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: tryptophan--tRNA ligase; SPTR: tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004272134.1 KEGG: spu:757187 similar to LPAAT; SPTR: uncharacterized protein YP_004272135.1 KEGG: pno:SNOG_06002 hypothetical protein; SPTR: RhcC2 YP_004272136.1 COGs: COG0657 esterase/lipase; KEGG: psl:Psta_1509 esterase/lipase-like protein; SPTR: Probable lipase/esterase; PFAM: alpha/beta hydrolase fold YP_004272137.1 COGs: COG1796 DNA polymerase IV (family X); InterPro IPR002054: IPR003141: IPR004013; KEGG: plm:Plim_1730 DNA-directed DNA polymerase; PFAM: PHP, C-terminal; SMART: DNA-directed DNA polymerase, family X; polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase beta family protein; PFAM: PHP domain YP_004272138.1 InterPro IPR007055; KEGG: aca:ACP_2538 osmotically inducible protein Y domain protein; PFAM: transport-associated; SPTR: uncharacterized protein; PFAM: phospholipid-binding domain YP_004272139.1 KEGG: psl:Psta_4523 hypothetical protein; SPTR: uncharacterized protein YP_004272140.1 InterPro IPR012902; KEGG: plm:Plim_2789 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272141.1 COGs: COG0344 membrane protein; HAMAP: protein of unknown function DUF205; InterPro IPR020788: IPR003811; KEGG: plm:Plim_0829 protein of unknown function DUF205; PFAM: protein of unknown function DUF205; SPTR: glycerol-3-phosphate acyltransferase; TIGRFAM: membrane protein YgiH; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004272142.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR004479: IPR018317; KEGG: plm:Plim_1942 ExsB protein; PFAM: Queuosine synthesis-like; SPTR: ExsB; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: ExsB; TIGRFAM: exsB protein YP_004272143.1 KEGG: plm:Plim_4228 hypothetical protein; SPTR: uncharacterized protein YP_004272144.1 COGs: COG3869 arginine kinase; HAMAP: ATP:guanido phosphotransferase; InterPro IPR000749; KEGG: plm:Plim_0763 ATP:guanido phosphotransferase; PFAM: ATP:guanido phosphotransferase; SPTR: ATP:guanido phosphotransferase; PFAM: ATP:guanido phosphotransferase, C-terminal catalytic domain YP_004272145.1 COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: plm:Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: peptidyl-prolyl cis-trans isomerase, cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004272146.1 InterPro IPR000182; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_004272147.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dat:HRM2_13220 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; SPTR: histone deacetylase superfamily protein; PFAM: histone deacetylase domain YP_004272148.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase, C-terminal; SPTR: D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004272149.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095; KEGG: psl:Psta_3377 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004272150.1 InterPro IPR005358; KEGG: psl:Psta_3378 protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004272151.1 COGs: COG1509 lysine 2 3-aminomutase; InterPro IPR003739: IPR007197; KEGG: psl:Psta_3379 lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM; PRIAM: lysine 2,3-aminomutase; SPTR: lysine 2,3-aminomutase YodO family protein; TIGRFAM: protein of unknown function DUF160; PFAM: lysine-2,3-aminomutase; radical SAM superfamily; TIGRFAM: KamA family protein YP_004272152.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: nth:Nther_2729 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004272153.1 COGs: COG2021 homoserine acetyltransferase; HAMAP: homoserine O-acetyltransferase; InterPro IPR006296: IPR000073; KEGG: plm:Plim_1427 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold-1; PRIAM: homoserine O-acetyltransferase; SPTR: homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase YP_004272154.1 InterPro IPR013097; KEGG: rba:RB5657 hypothetical protein; PFAM: stress responsive alpha-beta barrel; SPTR: uncharacterized protein; PFAM: stress responsive A/B Barrel Domain YP_004272155.1 InterPro IPR001087; KEGG: rba:RB6332 hypothetical protein; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/acylhydrolase YP_004272156.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: plm:Plim_2620 cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; SPTR: cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004272157.1 COGs: COG1792 cell shape-determining protein; KEGG: plm:Plim_2621 hypothetical protein; SPTR: uncharacterized protein; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC YP_004272158.1 KEGG: vpr:Vpar_0357 oligopeptide transporter OPT family; SPTR: Rod shape-determining protein MreD YP_004272159.1 KEGG: plm:Plim_0749 hypothetical protein; SPTR: uncharacterized protein YP_004272160.1 KEGG: plm:Plim_0750 hypothetical protein; SPTR: uncharacterized protein YP_004272161.1 KEGG: plm:Plim_0751 hypothetical protein; SPTR: chromosome segregation protein YP_004272162.1 KEGG: plm:Plim_2813 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1559) YP_004272163.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR020573: IPR001451: IPR007691; KEGG: plm:Plim_2360 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004272164.1 COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: plm:Plim_2359 protein of unknown function DUF1009; PFAM: protein of unknown function DUF1009; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1009) YP_004272165.1 InterPro IPR000253; KEGG: plm:Plim_2211 forkhead-associated protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Forkhead-associated protein; PFAM: FHA domain YP_004272166.1 COGs: COG4232 thiol:disulfide interchange protein; InterPro IPR003834; KEGG: plm:Plim_0535 cytochrome C biogenesis protein transmembrane region; PFAM: cytochrome C assembly protein, transmembrane domain; PRIAM: protein-disulfide reductase; SPTR: cytochrome C biogenesis protein transmembrane region; PFAM: protein of unknown function, DUF255; cytochrome C biogenesis protein transmembrane region YP_004272167.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: psl:Psta_3590 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PRIAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004272168.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: plm:Plim_2444 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004272169.1 KEGG: rba:RB11519 hypothetical protein; SPTR: uncharacterized protein YP_004272170.1 KEGG: zpr:ZPR_2903 hypothetical protein; SPTR: uncharacterized protein YP_004272171.1 KEGG: plm:Plim_2690 hypothetical protein; SPTR: uncharacterized protein YP_004272172.1 COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: plm:Plim_0560 CoA-binding protein; PFAM: CoA-binding; SPTR: uncharacterized protein YP_004272173.1 COGs: COG4398 conserved hypothetical protein; InterPro IPR013702: IPR019494; KEGG: plm:Plim_1400 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SPTR: uncharacterized protein; PFAM: FIST C domain; FIST N domain YP_004272174.1 COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492; KEGG: plm:Plim_2711 flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal; SPTR: Probable flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region YP_004272175.1 COGs: COG1256 flagellar hook-associated protein; InterPro IPR010930: IPR002371; KEGG: plm:Plim_2709 flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078, C-terminal; SPTR: Probable flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK YP_004272176.1 KEGG: plm:Plim_2708 hypothetical protein; SPTR: uncharacterized protein; PFAM: FlgN protein YP_004272177.1 InterPro IPR019301; KEGG: plm:Plim_2707 hypothetical protein; PFAM: flagellar protein FlgJ, N-terminal; SPTR: uncharacterized protein; PFAM: Rod binding protein YP_004272178.1 COGs: COG1706 flagellar basal-body P-ring protein; InterPro IPR001782; KEGG: plm:Plim_2706 flagellar P-ring protein; PFAM: flagellar P-ring protein; SPTR: flagellar P-ring protein; PFAM: flagellar P-ring protein YP_004272179.1 COGs: COG2063 flagellar basal body L-ring protein; InterPro IPR000527; KEGG: plm:Plim_2705 flagellar L-ring protein; PFAM: flagellar L-ring protein; SPTR: Probable flagellar L-ring protein FlgH; PFAM: flagellar L-ring protein YP_004272180.1 COGs: COG1261 flagellar basal body P-ring biosynthesis protein; InterPro IPR013974: IPR017585; KEGG: plm:Plim_2704 flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; SPTR: Flageller protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA YP_004272181.1 COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013: IPR012834; KEGG: plm:Plim_2703 flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078, C-terminal; flagellar basal body rod protein, N-terminal; SPTR: flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria YP_004272182.1 COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013; KEGG: plm:Plim_2702 protein of unknown function DUF1078 domain protein; PFAM: flagellar basal body rod protein, N-terminal; protein of unknown function DUF1078, C-terminal; SPTR: flagellar biosynthesisprotein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins YP_004272183.1 KEGG: bpu:BPUM_1061 oligopeptide ABC transporter ATP-binding protein; SPTR: uncharacterized protein YP_004272184.1 InterPro IPR011449: IPR013424; KEGG: mbr:MONBRDRAFT_8244 hypothetical protein; PFAM: PEP-CTERM bacterial; SPTR: Cna protein B-type domain; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM exosortase interaction domain YP_004272185.1 KEGG: plm:Plim_2798 hypothetical protein; SPTR: uncharacterized protein YP_004272186.1 InterPro IPR012902; KEGG: plm:Plim_2813 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272187.1 KEGG: psl:Psta_1458 hypothetical protein; SPTR: uncharacterized protein YP_004272188.1 KEGG: mbn:Mboo_1551 hypothetical protein; SPTR: ribosomal RNA small subunit methyltransferase G YP_004272189.1 KEGG: plm:Plim_3890 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004272190.1 KEGG: cvi:CV_0706 hypothetical protein; SPTR: uncharacterized protein YP_004272191.1 InterPro IPR012902; KEGG: plm:Plim_0844 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272192.1 KEGG: sde:Sde_0242 band 7 protein; SPTR: polysaccharide-binding protein YP_004272193.1 InterPro IPR012902; KEGG: plm:Plim_1625 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272194.1 KEGG: plm:Plim_2790 hypothetical protein; SPTR: uncharacterized protein YP_004272195.1 InterPro IPR012902; KEGG: plm:Plim_3726 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272196.1 InterPro IPR012902; KEGG: plm:Plim_3726 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272198.1 KEGG: aae:aq_854 hypothetical protein; SPTR: uncharacterized protein YP_004272199.1 KEGG: adg:Adeg_0805 hypothetical protein; SPTR: uncharacterized protein YP_004272200.1 KEGG: cel:C25G6.3 hypothetical protein; SPTR: uncharacterized protein YP_004272201.1 KEGG: cch:Cag_0984 hypothetical protein; SPTR: uncharacterized protein YP_004272202.1 InterPro IPR001087; KEGG: psl:Psta_0971 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: secreted protein; PFAM: GDSL-like Lipase/acylhydrolase YP_004272203.1 SPTR: chromosome 19 SCAF14302, whole genome shotgun sequence YP_004272204.1 COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241; KEGG: plm:Plim_4151 RNA methylase; PFAM: RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: RNA methylase; PFAM: RNA methylase family UPF0020 YP_004272205.1 COGs: COG2252 Permease; KEGG: plm:Plim_2322 hypothetical protein; SPTR: uncharacterized protein YP_004272206.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: met:M446_0559 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: methyltransferase domain family protein; PFAM: methyltransferase domain YP_004272207.1 KEGG: plm:Plim_3321 hypothetical protein; SPTR: uncharacterized protein YP_004272208.1 KEGG: plm:Plim_0396 hypothetical protein; SPTR: uncharacterized protein YP_004272209.1 KEGG: plm:Plim_0397 hypothetical protein; SPTR: uncharacterized protein YP_004272210.1 KEGG: plm:Plim_0399 hypothetical protein; SPTR: uncharacterized protein YP_004272211.1 InterPro IPR001434; KEGG: plm:Plim_0400 conserved repeat domain protein; PFAM: protein of unknown function DUF11; SPTR: uncharacterized protein; TIGRFAM: protein of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004272212.1 KEGG: psl:Psta_3808 hypothetical protein; SPTR: uncharacterized protein YP_004272213.1 COGs: COG0529 adenylylsulfate kinase and related kinase; HAMAP: adenylylsulfate kinase, C-terminal; InterPro IPR002891; KEGG: plm:Plim_0313 adenylylsulfate kinase; PFAM: adenylylsulfate kinase, C-terminal; PRIAM: adenylyl-sulfate kinase; SPTR: adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase, C-terminal; PFAM: adenylylsulfate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004272214.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: plm:Plim_3794 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V YP_004272215.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: rba:RB2032 delta 9 acyl-lipid fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: stearoyl-CoA 9-desaturase; SPTR: delta 9 acyl-lipid fatty acid desaturase; PFAM: Fatty acid desaturase YP_004272216.1 InterPro IPR008915; KEGG: rba:RB10479 transmembrane protein; PFAM: peptidase M50; SPTR: uncharacterized protein YP_004272217.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: psl:Psta_1800 secretion protein HlyD; PFAM: Secretion protein HlyD; SPTR: Probable multidrug efflux pump; PFAM: HlyD family secretion protein YP_004272218.1 COGs: COG1054 sulfurtransferase; HAMAP: Uncharacterised protein family UPF0176; InterPro IPR001763: IPR006145: IPR020936; KEGG: psl:Psta_4621 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; Rhodanese-like; SMART: Rhodanese-like; SPTR: Pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; Rhodanese-like domain; TIGRFAM: pseudouridine synthase; pseudouridine synthase, RluA family YP_004272219.1 COGs: COG0161 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814: IPR005815; KEGG: hmo:HM1_0395 adenosylmethionine-8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III; PRIAM: adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004272220.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: plm:Plim_1630 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2 YP_004272221.1 KEGG: cyn:Cyan7425_4675 major facilitator superfamily MFS_1; SPTR: uncharacterized protein YP_004272222.1 COGs: COG2186 transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: pst:PSPTO_4550 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_004272223.1 COGs: COG4911 conserved hypothetical protein; InterPro IPR018699; KEGG: psl:Psta_2443 hypothetical protein; PFAM: protein of unknown function DUF2203; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2203) YP_004272224.1 InterPro IPR011444; KEGG: psl:Psta_4557 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004272225.1 KEGG: plm:Plim_1363 hypothetical protein; SPTR: uncharacterized protein YP_004272226.1 InterPro IPR010869; KEGG: rba:RB430 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004272227.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: plm:Plim_1283 oxidoreductase; PFAM: oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004272228.1 COGs: COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain; InterPro IPR001789: IPR002197; KEGG: rba:RB12952 two-component system, regulatory protein; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system, regulatory protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family YP_004272229.1 COGs: COG0142 geranylgeranyl pyrophosphate synthase; InterPro IPR002829: IPR000092; KEGG: plm:Plim_2915 protein of unknown function DUF116; PFAM: protein of unknown function DUF116; polyprenyl synthetase; SPTR: polyprenyl synthetase; PFAM: polyprenyl synthetase; protein of unknown function DUF116 YP_004272230.1 KEGG: mgm:Mmc1_0732 ABC transporter; SPTR: uncharacterized protein YP_004272231.1 COGs: COG0253 diaminopimelate epimerase; HAMAP: diaminopimelate epimerase; InterPro IPR001653; KEGG: plm:Plim_0185 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: diaminopimelate epimerase; SPTR: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_004272232.1 COGs: COG2706 3-carboxymuconate cyclase; InterPro IPR001258; KEGG: plm:Plim_3679 6-phosphogluconolactonase; PFAM: NHL repeat; PRIAM: 6-phosphogluconolactonase; SPTR: uncharacterized protein; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme YP_004272233.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: pbr:PB2503_02547 mechanosensitive (MS) ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive (MS) ion channel; PFAM: Mechanosensitive ion channel YP_004272234.1 KEGG: rso:RSc3186 hypothetical protein; SPTR: uncharacterized protein YP_004272235.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR018480: IPR018481: IPR003524; KEGG: plm:Plim_1131 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: phospho-N-acetylmuramoyl-pentapeptide transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004272236.1 KEGG: plm:Plim_1422 hypothetical protein; SPTR: uncharacterized protein YP_004272237.1 COGs: COG2218 Formylmethanofuran dehydrogenase subunit C; InterPro IPR002489: IPR017550; KEGG: psl:Psta_0060 formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase, subunit alpha, C-terminal; SPTR: Molybdenum formylmethanofuran dehydrogenase, subunit C; TIGRFAM: Formylmethanofuran dehydrogenase subunit C; PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C YP_004272238.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dol:Dole_2010 peptide synthase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: peptide synthase; PFAM: AMP-binding enzyme YP_004272239.1 COGs: COG0451 nucleoside-diphosphate-sugar epimerase; KEGG: gbm:Gbem_2099 3-beta hydroxysteroid dehydrogenase/isomerase; PRIAM: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); SPTR: uncharacterized protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase family YP_004272240.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psl:Psta_3681 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulfatase A (Precursor); PFAM: Sulfatase YP_004272241.1 KEGG: plm:Plim_0805 hypothetical protein; SPTR: uncharacterized protein YP_004272242.1 COGs: COG1052 lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: maq:Maqu_3853 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: D-lactate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004272243.1 KEGG: swi:Swit_2375 hypothetical protein; SPTR: uncharacterized protein YP_004272244.1 COGs: COG0541 Signal recognition particle GTPase; InterPro IPR013822: IPR000897: IPR004125: IPR003593: IPR 004780; KEGG: plm:Plim_0181 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle protein YP_004272245.1 COGs: COG0015 adenylosuccinate lyase; InterPro IPR000362: IPR019468: IPR004769; KEGG: plm:Plim_3831 adenylosuccinate lyase; PFAM: fumarate lyase; adenylosuccinate lyase, C-terminal; PRIAM: adenylosuccinate lyase; SPTR: adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_004272246.1 KEGG: geo:Geob_2739 protein of unknown function DUF1579; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1579) YP_004272247.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254; KEGG: plm:Plim_3737 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; SPTR: peptidase S1 and S6 chymotrypsin/Hap; PFAM: Trypsin YP_004272248.1 InterPro IPR001440: IPR019734; KEGG: psl:Psta_3109 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: hypothetical protein; PFAM: Tetratricopeptide repeat YP_004272249.1 KEGG: rba:RB850 signal peptide; SPTR: uncharacterized protein YP_004272250.1 COGs: COG0021 transketolase; InterPro IPR005475: IPR005476; KEGG: cyc:PCC7424_4061 transketolase; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; SPTR: transketolase; PFAM: transketolase, thiamine diphosphate binding domain; transketolase, C-terminal domain; transketolase, pyrimidine binding domain YP_004272251.1 KEGG: plm:Plim_0255 hypothetical protein; SPTR: uncharacterized protein YP_004272252.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_0256 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter protein; PFAM: ABC transporter YP_004272253.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: plm:Plim_1352 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004272254.1 KEGG: psl:Psta_1673 hypothetical protein; SPTR: uncharacterized protein YP_004272255.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004272256.1 COGs: COG1821 ATP-utilizing protein (ATP-grasp superfamily); InterPro IPR003806; KEGG: meh:M301_1544 protein of unknown function DUF201; PFAM: ATP-grasp fold, DUF201-type; SPTR: uncharacterized protein; manually curated; PFAM: ATP-grasp domain YP_004272257.1 COGs: COG1548 transcriptional regulator/sugar kinase; InterPro IPR002821: IPR002756; KEGG: psl:Psta_3592 H4MPT-linked C1 transfer pathway protein; PFAM: hydantoinase/oxoprolinase; SPTR: uncharacterized protein; TIGRFAM: Tetrahydromethanopterin-linked C1 transfer pathway, PFAM: hydantoinase/oxoprolinase; TIGRFAM: probable H4MPT-linked C1 transfer pathway protein YP_004272258.1 KEGG: plm:Plim_3982 cytochrome C family protein; SPTR: cytochrome C family protein; PFAM: class III cytochrome C family YP_004272259.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; KEGG: plm:Plim_3983 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; PFAM: Molydopterin dinucleotide binding domain YP_004272260.1 COGs: COG5557 polysulphide reductase; InterPro IPR005614; KEGG: plm:Plim_3984 polysulphide reductase NrfD; PFAM: polysulphide reductase, NrfD; SPTR: Probable molybdopterin oxidoreductase, membrane subunit; PFAM: polysulphide reductase, NrfD YP_004272261.1 KEGG: plm:Plim_3985 hypothetical protein; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF3341); cytochrome C YP_004272262.1 KEGG: plm:Plim_3986 hypothetical protein; SPTR: uncharacterized protein YP_004272264.1 KEGG: plm:Plim_3987 hypothetical protein; SPTR: uncharacterized protein YP_004272265.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; KEGG: plm:Plim_3988 electron transporter SCO1/SenC; SPTR: SCO1/SenC family protein YP_004272266.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759: IPR002429: IPR003088: IPR014222; KEGG: plm:Plim_3989 cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II C-terminal; cytochrome C oxidase subunit II, transmembrane domain; cytochrome C, class I; SPTR: cytochrome C oxidase subunit II; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C; cytochrome C oxidase subunit II, periplasmic domain; cytochrome C oxidase subunit II, transmembrane domain; TIGRFAM: cytochrome C oxidase subunit II YP_004272267.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883: IPR014241; KEGG: plm:Plim_3990 cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; SPTR: cytochrome oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I bacterial type; PFAM: cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase subunit I YP_004272268.1 COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; KEGG: rba:RB12685 cytochrome oxidase subunit III; SPTR: cytochrome oxidase subunit III; PFAM: cytochrome C oxidase subunit III YP_004272269.1 InterPro IPR011743; KEGG: rba:RB12687 cytochrome oxidase subunit IV; SPTR: Similar to cytochrome oxidase subunit IV; TIGRFAM: Caa(3)-type oxidase subunit IV; TIGRFAM: caa(3)-type oxidase subunit IV YP_004272270.1 COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; KEGG: plm:Plim_3993 cytochrome C oxidase subunit III; SPTR: cytochrome C oxidase subunit III; PFAM: SCAMP family; cytochrome C oxidase subunit III YP_004272271.1 KEGG: rba:RB3006 sialidase; SPTR: Probable sialidase YP_004272272.1 KEGG: isc:IscW_ISCW018571 retinal degeneration B protein, SPTR: polyprotein YP_004272273.1 KEGG: amr:AM1_3275 hypothetical protein; SPTR: uncharacterized protein YP_004272274.1 COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: cyh:Cyan8802_3700 protein of unknown function DUF785; PFAM: protein of unknown function DUF785; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF785) YP_004272275.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478; KEGG: plm:Plim_1811 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: uncharacterized protein; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004272276.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: bacitracin resistance protein BacA; InterPro IPR003824; KEGG: rba:RB7435 bacitracin resistance protein (BacA); PFAM: bacitracin resistance protein BacA; SPTR: undecaprenyl-diphosphatase; PFAM: bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004272277.1 KEGG: plm:Plim_1822 hypothetical protein; SPTR: uncharacterized protein YP_004272278.1 KEGG: plm:Plim_1821 hypothetical protein; SPTR: uncharacterized protein YP_004272279.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: plm:Plim_1820 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: inositol monophosphatase; PFAM: inositol monophosphatase family YP_004272280.1 COGs: COG1052 lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: rba:RB6394 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: glyoxylate reductase; SPTR: Probable 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004272281.1 InterPro IPR000045; KEGG: plm:Plim_1819 peptidase A24A prepilin type IV; PFAM: peptidase A24A, prepilin type IV; SPTR: uncharacterized protein; PFAM: type IV leader peptidase family YP_004272282.1 InterPro IPR012495; KEGG: plm:Plim_1818 TadE family protein; PFAM: TadE-like; SPTR: TadE family protein; PFAM: TadE-like protein YP_004272283.1 COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR013974: IPR017592; KEGG: plm:Plim_1817 Flp pilus assembly protein CpaB; PFAM: SAF domain; SPTR: uncharacterized protein; TIGRFAM: pilus assembly, Flp-type CpaB; TIGRFAM: Flp pilus assembly protein CpaB YP_004272284.1 KEGG: plm:Plim_1816 hypothetical protein; SPTR: uncharacterized protein YP_004272285.1 COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: plm:Plim_1815 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: type II secretion system protein E; PFAM: type II/IV secretion system protein YP_004272286.1 COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: plm:Plim_1814 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004272287.1 COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: plm:Plim_1813 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: uncharacterized protein; PFAM: Bacterial type II secretion system protein F domain YP_004272288.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: GTP cyclohydrolase II; InterPro IPR000422: IPR000926; KEGG: plm:Plim_2277 GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; DHBP synthase RibB; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004272289.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR014284; KEGG: psl:Psta_2776 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; SPTR: Probable RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004272290.1 COGs: COG1533 DNA repair photolyase; KEGG: bmq:BMQ_3222 Fe-S radical SAM protein; SPTR: uncharacterized protein YP_004272291.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004272292.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004272293.1 KEGG: plm:Plim_0020 hypothetical protein; SPTR: uncharacterized protein YP_004272294.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: excinuclease ABC subunit B; InterPro IPR006935: IPR001650: IPR001943: IPR014001: IPR 004807; KEGG: plm:Plim_0981 excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC subunit B; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC subunit B YP_004272295.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478; KEGG: plm:Plim_1810 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: serine proteinase, HtrA/DegQ/DegS family; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004272296.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: plm:Plim_1809 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Periplasmic serine proteinase DO; PFAM: Trypsin YP_004272297.1 InterPro IPR013222; KEGG: plm:Plim_1808 glycosyl hydrolase family 98 carbohydrate binding module; PFAM: glycosyl hydrolase family 98, carbohydrate-binding module; SMART: glycosyl hydrolase family 98, carbohydrate-binding module; SPTR: glycosyl hydrolase family 98, carbohydrate binding module; PFAM: NPCBM/NEW2 domain YP_004272298.1 KEGG: plm:Plim_1807 hypothetical protein; SPTR: uncharacterized protein YP_004272299.1 KEGG: plm:Plim_1806 hypothetical protein; SPTR: uncharacterized protein YP_004272300.1 KEGG: plm:Plim_1805 hypothetical protein; SPTR: uncharacterized protein YP_004272301.1 KEGG: plm:Plim_1804 hypothetical protein; SPTR: uncharacterized protein YP_004272302.1 InterPro IPR011933; KEGG: plm:Plim_1803 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double transmembrane domain; PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain YP_004272303.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor A (vWA) domain); InterPro IPR002881; KEGG: plm:Plim_1802 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: protein of unknown function DUF58 YP_004272304.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: plm:Plim_1801 ATPase AAA; PFAM: ATPase, AAA-3; SPTR: uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004272305.1 COGs: COG3132 conserved hypothetical protein; InterPro IPR007432; KEGG: plm:Plim_0712 hypothetical protein; PFAM: protein of unknown function DUF480; SPTR: uncharacterized protein; PFAM: protein of unknown function, DUF480 YP_004272306.1 InterPro IPR003489; KEGG: plm:Plim_0362 ribosomal subunit interface protein; PFAM: ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: Probable sigma-54 modulation protein; TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_004272307.1 COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: plm:Plim_0361 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; SPTR: PTS system, fructose-specific enzyme II, BC component; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_004272308.1 COGs: COG1925 phosphotransferase system HPr-related protein; InterPro IPR005698; KEGG: plm:Plim_0360 phosphocarrier, HPr family; PFAM: phosphotransferase system, phosphocarrier HPr protein; SPTR: phosphocarrier, HPr family; TIGRFAM: phosphotransferase system, phosphocarrier HPr protein; PFAM: PTS HPr component phosphorylation site; TIGRFAM: phosphotransferase System HPr (HPr) Family YP_004272309.1 COGs: COG4270 membrane protein; KEGG: amr:AM1_6087 hypothetical protein; SPTR: uncharacterized protein YP_004272310.1 COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: plm:Plim_0695 RNA polymerase sigma-54 factor, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase subunit sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_004272311.1 COGs: COG0353 recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR015967: IPR006171: IPR006154: IPR000093; KEGG: plm:Plim_0694 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; SMART: Toprim domain, subgroup; SPTR: Recombinant protein RecR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004272312.1 COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: aar:Acear_0031 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_004272313.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003959: IPR003593: IPR012763; KEGG: plm:Plim_0692 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III gamma and tau subunits; TIGRFAM: DNA polymerase III subunit gamma/ tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III delta' subunit; DNA polymerase III subunit gamma and tau YP_004272314.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747; KEGG: psl:Psta_4249 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; SPTR: 3-oxoacyl-(acyl carrier protein) synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; thiolase, N-terminal domain YP_004272315.1 KEGG: ani:AN5037.2 hypothetical protein YP_004272316.1 InterPro IPR005500; KEGG: plm:Plim_1435 protein of unknown function DUF309; PFAM: protein of unknown function DUF309; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF309) YP_004272317.1 InterPro IPR011444; KEGG: plm:Plim_0522 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004272318.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR010869: IPR006311; KEGG: plm:Plim_0523 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501) YP_004272319.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: plm:Plim_0524 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable ECF-like sigma factor SigE; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family YP_004272320.1 InterPro IPR011444; KEGG: plm:Plim_0522 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004272321.1 COGs: COG0019 diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: plm:Plim_1775 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: diaminopimelate decarboxylase; SPTR: diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: pyridoxal-dependent decarboxylase, C-terminal sheet domain; pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_004272322.1 InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein; PFAM: NIPSNAP YP_004272323.1 COGs: COG2409 drug exporter of the RND superfamily; KEGG: plm:Plim_0066 MmpL domain protein; SPTR: MMPL domain protein; PFAM: MMPL family YP_004272324.1 COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: plm:Plim_1159 quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthetase complex, subunit alpha; TIGRFAM: Quinolinate synthetase A; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004272325.1 KEGG: tpr:Tpau_4038 DNA primase small subunit; SPTR: DNA primase small subunit YP_004272326.1 InterPro IPR006119; KEGG: ckl:CKL_1918 phage invertase/recombinase-related protein; PFAM: Resolvase, N-terminal; SPTR: Site-specific DNA recombinase; PFAM: Recombinase; Resolvase, N terminal domain YP_004272327.1 KEGG: ptm:GSPATT00036033001 hypothetical protein; SPTR: chromosome undetermined scaffold_156, whole genome shotgun sequence YP_004272328.1 KEGG: bpd:BURPS668_A0204 chemotaxis protein CheA; SPTR: Chemotaxis protein CheA YP_004272329.1 InterPro IPR000089; KEGG: psl:Psta_1800 secretion protein HlyD family protein; PFAM: Biotin/lipoyl attachment; SPTR: Probable multidrug efflux pump YP_004272330.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR011115: IPR011130: IPR000185; KEGG: psl:Psta_0860 SecA DEAD domain protein; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; SPTR: translocase; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain YP_004272331.1 InterPro IPR003018; KEGG: rba:RB10473 alkaline protease secretion protein AprE; PFAM: GAF; SMART: GAF; SPTR: uncharacterized protein YP_004272332.1 KEGG: psl:Psta_2183 peptidase M50; SPTR: uncharacterized protein; PFAM: peptidase family M50 YP_004272333.1 InterPro IPR001440: IPR000863: IPR019734; KEGG: bbt:BBta_4342 hypothetical protein; PFAM: Tetratricopeptide TPR-1; Sulfotransferase domain; SPTR: uncharacterized protein; PFAM: Sulfotransferase domain; Tetratricopeptide repeat YP_004272334.1 InterPro IPR002126: IPR010221; KEGG: ddd:Dda3937_01477 hemagglutinin/hemolysin-related protein; PFAM: cadherin; SMART: cadherin; SPTR: uncharacterized protein; TIGRFAM: VCBS repeat; PFAM: cadherin domain YP_004272335.1 KEGG: nml:Namu_2755 peptidoglycan-binding LysM; SPTR: peptidoglycan-binding LysM YP_004272336.1 KEGG: pay:PAU_00906 filamentous haemagglutinin family protein; SPTR: Filamentous haemagglutinin family protein YP_004272337.1 KEGG: cyt:cce_4387 hypothetical protein; SPTR: uncharacterized protein YP_004272338.1 KEGG: sbi:SORBI_05g008690 hypothetical protein; SPTR: uncharacterized protein Sb05g008690 YP_004272339.1 KEGG: ctj:JALI_3711 pyruvoyl-dependent arginine decarboxylase; SPTR: Pyruvoyl-dependent arginine decarboxylase YP_004272340.1 KEGG: pmr:PMI3605 cell division protein; SPTR: cell division protein YP_004272341.1 KEGG: bxe:Bxe_A0529 hypothetical protein; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004272342.1 COGs: COG2755 lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sus:acid_5759 GDSL family lipase; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/acylhydrolase YP_004272343.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bid:Bind_2206 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004272344.1 KEGG: rba:RB7028 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat YP_004272345.1 KEGG: dda:Dd703_1798 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component YP_004272346.1 KEGG: fal:FRAAL0389 TetR family transcriptional regulator; SPTR: TetR-family transcriptional regulator (Partial match) YP_004272347.1 KEGG: kra:Krad_2186 hypothetical protein; SPTR: uncharacterized protein YP_004272348.1 KEGG: rba:RB7052 hypothetical protein; SPTR: phosphate ABC superfamily ATP binding cassette transporter membrane protein YP_004272349.1 KEGG: cag:Cagg_0225 cation diffusion facilitator family transporter; SPTR: Cation diffusion facilitator family transporter YP_004272350.1 KEGG: cbt:CLH_2829 CBS domain/MgtE intracellular domain protein; SPTR: CBS domain/MgtE intracellular domain protein YP_004272351.1 COGs: COG0657 esterase/lipase; KEGG: plm:Plim_2589 alpha/beta hydrolase fold-3 domain protein; SPTR: alpha/beta hydrolase fold-3 domain protein; PFAM: alpha/beta hydrolase fold YP_004272352.1 KEGG: rba:RB11095 hypothetical protein; SPTR: uncharacterized protein YP_004272353.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR003594; KEGG: rba:RB3606 sensor protein FixL; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Probable sensor protein fixL; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_004272354.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transporter; InterPro IPR003661: IPR003594: IPR001789; KEGG: dal:Dalk_1096 response regulator receiver sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver sensor hybrid histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004272355.1 KEGG: sta:STHERM_c15300 hypothetical protein; SPTR: uncharacterized protein YP_004272356.1 COGs: COG4430 conserved hypothetical protein; InterPro IPR014922: IPR018967; KEGG: cpi:Cpin_6138 hypothetical protein; PFAM: protein of unknown function DUF1801; Iron sulphur-containing domain, CDGSH-type; SPTR: YdeI; PFAM: Domain of unknown function (DU1801) YP_004272357.1 KEGG: psl:Psta_1503 hypothetical protein; SPTR: uncharacterized protein YP_004272358.1 InterPro IPR012902; KEGG: plm:Plim_2547 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272359.1 KEGG: rba:RB3866 hypothetical protein; SPTR: uncharacterized protein YP_004272360.1 KEGG: rba:RB3295 signal peptide; SPTR: uncharacterized protein YP_004272361.1 InterPro IPR012902; KEGG: plm:Plim_1302 protein of unknown function DUF1559; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004272362.1 COGs: COG1477 membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: plm:Plim_3767 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: Probable thiamine biosynthesis lipoprotein apbE (Precursor); PFAM: ApbE family YP_004272363.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573: IPR004431; KEGG: plm:Plim_0321 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004272364.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit region; InterPro IPR001030: IPR004430; KEGG: plm:Plim_0323 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit YP_004272365.1 COGs: COG1064 Zn-dependent alcohol dehydrogenase; InterPro IPR013154: IPR013149; KEGG: rba:RB11151 zinc-type alcohol dehydrogenase-like protein YjgB; PFAM: alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like; PRIAM: Mannitol dehydrogenase; SPTR: Hypothetical zinc-type alcohol dehydrogenase-like protein yjgB; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004272366.1 COGs: COG0583 transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: plm:Plim_1664 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: hydrogen peroxide-inducible genes activator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_004272367.1 KEGG: rba:RB1138 hypothetical protein; SPTR: uncharacterized protein; PFAM: MarR family YP_004272368.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter Mnhsubunit alpha; InterPro IPR001750; KEGG: bbt:BBta_2651 NADH dehydrogenase; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YP_004272369.1 COGs: COG3002 conserved hypothetical protein; HAMAP: UPF0753 protein; InterPro IPR018752; KEGG: rca:Rcas_0567 hypothetical protein; PFAM: protein of unknown function DUF2309; SPTR: UPF0753 protein Rcas_0567; PFAM: Uncharacterized protein conserved in bacteria (DUF2309) YP_004272370.1 COGs: COG0755 ABC-type transporter involved in cytochrome C biogenesis permease; InterPro IPR002541; KEGG: plm:Plim_0023 cytochrome C assembly protein; PFAM: cytochrome C assembly protein; SPTR: Probable cytochrome C biogenesis protein; PFAM: cytochrome C assembly protein; ResB-like family YP_004272371.1 KEGG: plm:Plim_0022 hypothetical protein; SPTR: uncharacterized protein YP_004272372.1 COGs: COG3118 thioredoxin; InterPro IPR013766: IPR001254; KEGG: plm:Plim_3801 thioredoxin domain protein; PFAM: thioredoxin domain; peptidase S1/S6, chymotrypsin/Hap; SPTR: Probable thioredoxin; PFAM: thioredoxin; Trypsin YP_004272373.1 COGs: COG0031 Cysteine synthase; InterPro IPR001926: IPR005856: IPR005859; KEGG: plm:Plim_3256 cysteine synthase A; PFAM: pyridoxal phosphate-dependent enzyme subunit beta; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_004272374.1 KEGG: cdl:CDR20291_0562 hypothetical protein; SPTR: uncharacterized protein YP_004272375.1 InterPro IPR007837; KEGG: aca:ACP_0132 DinB family protein; PFAM: DinB; SPTR: uncharacterized protein; PFAM: DinB family YP_004272376.1 COGs: COG0001 glutamate-1-semialdehyde aminotransferase; HAMAP: glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR005814: IPR004639; KEGG: plm:Plim_2747 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; PRIAM: glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Probable glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_004272377.1 InterPro IPR012307; KEGG: cai:Caci_4226 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Xylose isomerase, TIM barrel domain; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily YP_004272378.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: plm:Plim_1243 HtrA2 peptidase; PFAM: peptidase S1/S6, chymotrypsin/Hap; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Periplasmic serine proteinase Do; PFAM: Trypsin YP_004272379.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: plm:Plim_3203 amidophosphoribosyltransferase family protein; PFAM: phosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase family protein; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004272380.1 InterPro IPR002912; KEGG: plm:Plim_0278 amino acid-binding ACT domain protein; PFAM: Amino acid-binding ACT; SPTR: Amino acid-binding ACT domain protein; PFAM: ACT domain YP_004272381.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: plm:Plim_0276 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: Hypothetical membrane spanning protein; PFAM: Domain of unknown function DUF20 YP_004272382.1 InterPro IPR001087; KEGG: psl:Psta_3477 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; PFAM: GDSL-like Lipase/acylhydrolase YP_004272383.1 InterPro IPR001440: IPR019734; KEGG: mno:Mnod_2480 peptidase C14 caspase catalytic subunit P20; PFAM: Tetratricopeptide TPR-1; SPTR: Hypothetical secreted protein; PFAM: Tetratricopeptide repeat YP_004272384.1 KEGG: afw:Anae109_3144 transport-associated; SPTR: transport-associated YP_004272385.1 COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086; KEGG: plm:Plim_3117 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1 YP_004272386.1 COGs: COG2133 glucose/sorbosone dehydrogenase; InterPro IPR004155: IPR013428: IPR013427; KEGG: plm:Plim_1972 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SPTR: uncharacterized protein; TIGRFAM: Haem-binding domain, ; membrane-bound dehydrogenase; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type YP_004272387.1 InterPro IPR010869: IPR006311; KEGG: plm:Plim_3228 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004272388.1 InterPro IPR011444: IPR000421: IPR006585; KEGG: psl:Psta_2234 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Coagulation factor 5/8 type, C-terminal; SMART: Fucolectin tachylectin-4 pentraxin-1; SPTR: uncharacterized protein; PFAM: Planctomycete cytochrome C; protein of unknown function (DUF1549); protein of unknown function (DUF1553) YP_004272389.1 InterPro IPR000421: IPR003088: IPR013427; KEGG: psl:Psta_1946 heme-binding protein; PFAM: Coagulation factor 5/8 type, C-terminal; cytochrome C, class I; SPTR: Heme-binding protein; TIGRFAM: Haem-binding domain, PFAM: F5/8 type C domain; cytochrome C; Trehalose utilisation; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type YP_004272390.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: rba:RB12361 ribokinase family sugar kinase; PFAM: carbohydrate/purine kinase; SPTR: Predicted ribokinase family sugar kinase; PFAM: pfkB family carbohydrate kinase YP_004272391.1 COGs: COG0077 prephenate dehydratase; InterPro IPR020822: IPR001086: IPR002912; KEGG: plm:Plim_2048 prephenate dehydratase; PFAM: prephenate dehydratase; chorismate mutase, type II; Amino acid-binding ACT; PRIAM: prephenate dehydratase; SPTR: P-protein (PheA); PFAM: prephenate dehydratase; chorismate mutase type II YP_004272392.1 COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR013126: IPR012725; KEGG: plm:Plim_2047 chaperone protein DnaK; PFAM: heat shock protein 70; SPTR: DnaK protein; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_004272393.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176: IPR003959: IPR013093: IPR019489: IPR 003593: IPR017730; KEGG: plm:Plim_2046 ATP-dependent chaperone ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent chaperone ClpB; TIGRFAM: chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_004272394.1 COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: psl:Psta_3105 protein of unknown function zinc metallopeptidase PFAM: protein of unknown function, zinc metallopeptidase SPTR: uncharacterized protein; PFAM: neutral zinc metallopeptidase YP_004272395.1 KEGG: xne:XNC1_1487 hypothetical protein; SPTR: uncharacterized protein YP_004272396.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: plm:Plim_2465 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: antibiotic resistance protein (antibiotic efflux protein); PFAM: Sugar (and other) transporter; Major Facilitator Superfamily YP_004272398.1 COGs: COG4587 ABC-type uncharacterized transporter permease; InterPro IPR010390; KEGG: plm:Plim_3531 protein of unknown function DUF990; PFAM: protein of unknown function DUF990; SPTR: uncharacterized protein; PFAM: protein of unknown function (DUF990) YP_004272399.1 COGs: COG4586 ABC-type uncharacterized transporter ATPase component; InterPro IPR003439: IPR003593; KEGG: plm:Plim_1396 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004272400.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151: IPR004447; KEGG: plm:Plim_1152 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: Periplasmic tail-specific proteinase; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: C-terminal domain of tail specific protease (DUF3340); peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004272401.1 COGs: COG0189 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651: IPR000685: IPR004666; KEGG: psl:Psta_3185 alpha-L-glutamate ligase, RimK family; PFAM: ATP-grasp fold, RimK-type; ribulose bisphosphate carboxylase, large subunit, C-terminal; PRIAM: glutathione synthase; SPTR: Probable ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; PFAM: RimK-like ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; alpha-L-glutamate ligases, RimK family YP_004272402.1 InterPro IPR011933; KEGG: mxa:MXAN_6472 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double transmembrane domain; TIGRFAM: N-terminal double-transmembrane domain YP_004272403.1 InterPro IPR000182; KEGG: psl:Psta_4773 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: FR47-like protein YP_004272404.1 KEGG: cli:Clim_0812 DNA polymerase III alpha subunit; SPTR: uncharacterized protein