-- dump date   	20140619_140219
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004046754.1	InterPro IPR005094; KEGG: sli:Slin_7038 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain
YP_004046755.1	KEGG: gga:419769 centrosomal protein 164kDa; SPTR: SMC proteins Flexible Hinge Domain
YP_004046756.1	KEGG: aga:AgaP_AGAP011062 AGAP011062-PA; SPTR: AGAP011062-PA
YP_004046757.1	COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: cyt:cce_2178 hypothetical protein; PFAM: YcfA family protein; SPTR: YcfA family protein; PFAM: YcfA-like protein
YP_004046758.1	COGs: COG1598 conserved hypothetical protein; InterPro IPR005357; KEGG: pmo:Pmob_1308 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0150)
YP_004046759.1	KEGG: eok:G2583_1235 hypothetical protein; SPTR: Putative uncharacterized protein yccE
YP_004046760.1	KEGG: ddi:DDB_G0271832 hypothetical protein; SPTR: Cell wall-binding protein associated metalloendopeptidase
YP_004046761.1	InterPro IPR000525; KEGG: cbf:CLI_A0012 RepB family protein; PFAM: initiator RepB protein; SPTR: RepB family protein; PFAM: Initiator Replication protein
YP_004052126.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR020591: IPR013317: IPR013159: IPR001957: IPR 003593: IPR018312; KEGG: aas:Aasi_0001 chromosomal replication initiation protein; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_004052127.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR000305: IPR006055: IPR006054; KEGG: cpi:Cpin_5498 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004052128.1	COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: tde:TDE0599 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: PIN domain protein; PFAM: PIN domain
YP_004052129.1	KEGG: rpr:RP822 hypothetical protein; SPTR: uncharacterized protein
YP_004052130.1	COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: phe:Phep_3280 homogentisate 12-dioxygenase; PFAM: homogentisate 12-dioxygenase; SPTR: Homogentisate 1,2-dioxygenase; PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase
YP_004052131.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151: IPR004447; KEGG: chu:CHU_0689 C-terminal processing peptidase-3; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004052132.1	KEGG: chu:CHU_0691 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of Unknown function (DUF542)
YP_004052133.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR005227: IPR006641; KEGG: phe:Phep_0074 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF
YP_004052134.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: chu:CHU_0693 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_004052135.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: pmf:P9303_28711 hypothetical protein; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004052136.1	KEGG: aav:Aave_4086 hypothetical protein; SPTR: uncharacterized protein
YP_004052137.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ddi:DDB_G0268008 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004052138.1	COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461: IPR004770; KEGG: cat:CA2559_12548 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family; TIGRFAM: Na+/H+ antiporter NhaC; TC 2.A.35
YP_004052139.1	COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: dsa:Desal_0122 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: uncharacterized protein; PFAM: 3'-5' exonuclease
YP_004052140.1	InterPro IPR003593; KEGG: gfo:GFO_2637 hypothetical protein; SMART: ATPase AAA; SPTR: ATPase involved in DNA repair; PFAM: ATPase family associated with various cellular activities (AAA); ATPase involved in DNA repair
YP_004052141.1	COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: gfo:GFO_2638 hypothetical protein; PFAM: hypothetical protein; SPTR: hypothetical protein
YP_004052142.1	KEGG: gfo:GFO_2639 membrane protein; SPTR: uncharacterized protein
YP_004052143.1	COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: gfo:GFO_2640 PspA/IM30 family protein; PFAM: PspA/IM30 family protein; SPTR: PspA/IM30 family protein; PFAM: PspA/IM30 family
YP_004052144.1	KEGG: gfo:GFO_2641 hypothetical protein; SPTR: uncharacterized protein
YP_004052145.1	InterPro IPR001387; KEGG: gfo:GFO_2642 HTH_3 family transcriptional regulator protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: uncharacterized protein; PFAM: Helix-turn-helix
YP_004052146.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588: IPR017178; KEGG: chu:CHU_2192 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: IspG family protein; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_004052147.1	KEGG: dfe:Dfer_0460 hypothetical protein; SPTR: uncharacterized protein
YP_004052148.1	COGs: COG2315 conserved hypothetical protein; KEGG: cpi:Cpin_1946 protein of unknown function DUF419; SPTR: MmcQ; PFAM: Protein of unknown function (DUF419)
YP_004052149.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR011659: IPR006665; KEGG: dfe:Dfer_5107 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052150.1	COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sml:Smlt3958 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004052151.1	KEGG: tet:TTHERM_00004820 hypothetical protein; SPTR: uncharacterized protein
YP_004052152.1	COGs: COG2020 protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269: IPR001104; KEGG: lic:LIC11491 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family
YP_004052153.1	KEGG: rba:RB11231 hypothetical protein; SPTR: uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_004052154.1	KEGG: sli:Slin_2536 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1083)
YP_004052155.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR000014; KEGG: zpr:ZPR_1259 PAS/PAC sensor signal transduction histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; TIGRFAM: PAS domain S-box
YP_004052156.1	COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000780: IPR000673: IPR013767: IPR003661: IPR 003594: IPR000014: IPR001610: IPR005467: IPR000700: IPR002052; KEGG: cts:Ctha_1653 signal transduction histidine kinase with CheB and CheR activity; PFAM: ATPase ATP-binding protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATPase ATP-binding protein; SPTR: CheB methylesterase:MCP methyltransferase, CheR-type; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052157.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR004358: IPR013655: IPR013656: IPR003661: IPR 003594: IPR000014: IPR005467: IPR000700; KEGG: htu:Htur_2280 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052158.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR012259: IPR001796; KEGG: sli:Slin_1051 dihydrofolate reductase; PFAM: dihydrofolate reductase region; SPTR: Dihydrofolate reductase; PFAM: Dihydrofolate reductase
YP_004052159.1	COGs: COG3001 conserved hypothetical protein; InterPro IPR016477; KEGG: sli:Slin_5692 fructosamine/ketosamine-3-kinase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: Ketosamine-3-kinase; PFAM: Fructosamine kinase
YP_004052160.1	KEGG: vpo:Kpol_520p23 hypothetical protein; SPTR: uncharacterized protein
YP_004052161.1	COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: pha:PSHAa1898 Na(+)-linked D-alanine glycine permease; PFAM: sodium:alanine symporter; SPTR: Na(+)-linked D-alanine glycine permease; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein
YP_004052162.1	KEGG: msl:Msil_3083 hypothetical protein; SPTR: uncharacterized protein
YP_004052163.1	COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: cpb:Cphamn1_1469 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2141)
YP_004052164.1	KEGG: syp:SYNPCC7002_A1479 hypothetical protein; SPTR: uncharacterized protein
YP_004052165.1	COGs: COG0101 Pseudouridylate synthase; InterPro IPR020097: IPR001406: IPR000871; KEGG: gfo:GFO_1748 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: TRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_004052166.1	COGs: COG0031 Cysteine synthase; InterPro IPR001926: IPR005856: IPR005858: IPR001216; KEGG: fjo:Fjoh_2504 cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteine synthase B
YP_004052167.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: fjo:Fjoh_2124 LemA family protein; PFAM: LemA family protein; SPTR: Listeria epitope LemA; PFAM: LemA family
YP_004052168.1	KEGG: pmf:P9303_21011 galanin; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3137)
YP_004052169.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: chu:CHU_0685 serine O-acetyltransferase; PRIAM: Serine O-acetyltransferase; SPTR: serine acetyltransferase; TIGRFAM: serine O-acetyltransferase
YP_004052170.1	COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR008778: IPR012093; KEGG: chu:CHU_3130 hypothetical protein; PFAM: Pirin domain protein; SPTR: uncharacterized protein; PFAM: Pirin C-terminal cupin domain; Pirin
YP_004052171.1	InterPro IPR003091: IPR005821; KEGG: cts:Ctha_1801 ion transport protein; PFAM: Ion transport protein; SPTR: Probable ion transporter; PFAM: Ion transport protein
YP_004052172.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR001638: IPR003661: IPR003594: IPR 000014: IPR000909: IPR005467: IPR000700; KEGG: dba:Dbac_2309 PAS/PAC sensor hybrid histidine kinase; PFAM: extracellular solute-binding protein family 3; histidine kinase A domain protein; ATPase ATP-binding protein; SMART: extracellular solute-binding protein family 3; ATPase ATP-binding protein; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box
YP_004052173.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR004358: IPR001440: IPR003661: IPR003594: IPR 019734: IPR005467: IPR013026; KEGG: rbi:RB2501_12999 hypothetical protein; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; hypothetical protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052174.1	KEGG: apa:APP7_0224 lipoprotein
YP_004052175.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR003593; KEGG: chu:CHU_1965 response regulatory protein, sigma 54 related; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; ATPase AAA; SPTR: Response regulatory protein, sigma 54 related; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_004052176.1	KEGG: psl:Psta_4240 hypothetical protein; SPTR: uncharacterized protein
YP_004052177.1	InterPro IPR002625; KEGG: dfe:Dfer_2585 Smr protein/MutS2; PFAM: Smr protein/MutS2; SPTR: uncharacterized protein; PFAM: Smr domain
YP_004052178.1	KEGG: fps:FP1212 hypothetical protein; SPTR: uncharacterized protein
YP_004052179.1	COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR002081: IPR006050: IPR005101: IPR018394; KEGG: dfe:Dfer_4249 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photolyase-class I; PFAM: FAD binding domain of DNA photolyase; DNA photolyase
YP_004052180.1	InterPro IPR007452; KEGG: dfe:Dfer_3011 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_004052181.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861: IPR000905: IPR017860; KEGG: dfe:Dfer_3012 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_004052182.1	COGs: COG5496 thioesterase; KEGG: aac:Aaci_0813 hypothetical protein; SPTR: uncharacterized protein
YP_004052183.1	COGs: COG0691 tmRNA-binding protein; InterPro IPR000037: IPR020081; KEGG: bth:BT_0179 SsrA-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_004052184.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: fjo:Fjoh_4613 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: Lipoprotein; possible cell wall-associated hydrolase; PFAM: NlpC/P60 family
YP_004052185.1	COGs: COG1403 Restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease
YP_004052186.1	COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: chu:CHU_1735 glutamine synthetase; PFAM: glutamine synthetase catalytic region; SPTR: Glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal
YP_004052187.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917: IPR012160; KEGG: dfe:Dfer_0445 sulfatase; PFAM: sulfatase; SPTR: Sulfatase; PFAM: Sulfatase
YP_004052188.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848: IPR007197: IPR006638: IPR005839: IPR 006467: IPR020612; KEGG: dfe:Dfer_0444 MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family
YP_004052189.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832: IPR020828: IPR020829: IPR020831: IPR 006424: IPR020830; KEGG: sli:Slin_1998 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_004052190.1	SPTR: uncharacterized protein
YP_004052191.1	COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003395: IPR011890; KEGG: chu:CHU_1592 chromosome segregation protein, Smc family protein; PFAM: SMC domain protein; SPTR: Chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_004052192.1	COGs: COG3670 Lignostilbene-alpha beta-dioxygenase; KEGG: mar:MAE_33390 hypothetical protein; SPTR: uncharacterized protein; PFAM: Retinal pigment epithelial membrane protein
YP_004052193.1	KEGG: spu:588127 similar to Syne-1B; SPTR: uncharacterized protein
YP_004052194.1	KEGG: kol:Kole_0673 CRISPR-associated protein, Csh2 family; SPTR: uncharacterized protein
YP_004052195.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: dfe:Dfer_3380 transcriptional repressor, CopY family; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; PFAM: Penicillinase repressor
YP_004052196.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153: IPR003148: IPR022272; KEGG: zpr:ZPR_0004 sodium/hydrogen exchanger family protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; SPTR: Sodium/hydrogen exchanger family protein; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family
YP_004052197.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR001440: IPR003594: IPR019734: IPR 005467: IPR013026; KEGG: chu:CHU_3468 sensor histidine kinase; PFAM: ATPase ATP-binding protein; hypothetical protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052198.1	InterPro IPR000086: IPR020084; KEGG: mca:MCA0333 MutT/NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: MutT/nudix family protein; PFAM: NUDIX domain
YP_004052199.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839: IPR005861: IPR001917; KEGG: phe:Phep_3193 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_004052200.1	COGs: COG0141 Histidinol dehydrogenase; InterPro IPR012131; KEGG: pdi:BDI_0967 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_004052201.1	COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR013820: IPR013115: IPR020621: IPR018198; KEGG: dfe:Dfer_1142 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase
YP_004052202.1	KEGG: abo:ABO_1907 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF962)
YP_004052203.1	COGs: COG1739 conserved hypothetical protein; InterPro IPR001498: IPR020569; KEGG: bfs:BF2076 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family
YP_004052204.1	KEGG: sli:Slin_4259 hypothetical protein; SPTR: uncharacterized protein
YP_004052205.1	KEGG: chu:CHU_2507 membrane protein; SPTR: Membrane protein
YP_004052206.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_5016 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase; PFAM: Glycosyl transferase family 2
YP_004052207.1	COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR000106: IPR017867; KEGG: lil:LB035 low molecular weight phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Phosphotyrosine protein phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_004052208.1	COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: chu:CHU_0749 hypothetical protein; SPTR: uncharacterized protein
YP_004052209.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: chu:CHU_0750 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_004052210.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: sli:Slin_4901 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein
YP_004052211.1	COGs: COG2912 conserved hypothetical protein; KEGG: dfe:Dfer_2893 hypothetical protein; SPTR: uncharacterized protein
YP_004052212.1	COGs: COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; InterPro IPR008278; KEGG: dfe:Dfer_2892 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily
YP_004052213.1	COGs: COG2319 FOG: WD40 repeat; InterProIPR020472: IPR019781: IPR001680: IPR019782: IPR 017986: IPR019775; KEGG: chu:CHU_0759 WD-40 repeat-containing protein; PFAM: hypothetical protein; SMART: WD-40 repeat-containing protein; SPTR: WD-40 repeat-protein; PFAM: WD domain, G-beta repeat
YP_004052214.1	InterPro IPR007793: IPR019933; KEGG: chu:CHU_0760 cell division initiation protein; PFAM: DivIVA family protein; SPTR: Cell division initiation protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain
YP_004052215.1	COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157: IPR006156; KEGG: dfe:Dfer_2889 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain
YP_004052216.1	COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: bha:BH1983 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: urocanate hydratase; PFAM: Urocanase; TIGRFAM: urocanate hydratase
YP_004052217.1	KEGG: rle:RL0773 hypothetical protein; SPTR: uncharacterized protein
YP_004052218.1	COGs: COG1522 Transcriptional regulators; InterPro IPR000485: IPR019887: IPR019888; KEGG: fjo:Fjoh_1520 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: HTH domain; AsnC family
YP_004052219.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: rmr:Rmar_1177 cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Cys/Met metabolism PLP-dependent enzyme; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_004052220.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547: IPR002645; KEGG: cat:CA2559_12953 sulfate permease family protein; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate transporter; PFAM: Sulfate transporter family; STAS domain
YP_004052221.1	KEGG: chu:CHU_0232 antifreeze-related protein; SPTR: CHU large protein; antifreeze-related protein; PFAM: Protein of unknown function (DUF3494)
YP_004052222.1	KEGG: cpi:Cpin_6196 hypothetical protein; SPTR: uncharacterized protein
YP_004052223.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: chu:CHU_1062 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004052224.1	KEGG: pna:Pnap_4542 hypothetical protein; SPTR: uncharacterized protein
YP_004052225.1	KEGG: sun:SUN_0739 hypothetical protein; SPTR: uncharacterized protein
YP_004052226.1	KEGG: bcl:ABC3265 hypothetical protein; SPTR: uncharacterized protein
YP_004052227.1	KEGG: dal:Dalk_4241 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0158)
YP_004052228.1	COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110; KEGG: cpi:Cpin_3143 two component regulator propeller domain protein; PFAM: Two component regulator propeller; SPTR: GGDEF domain protein; PFAM: Two component regulator propeller
YP_004052229.1	COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sus:Acid_1775 esterase; PFAM: esterase; SPTR: Enterochelin esterase; PFAM: esterase
YP_004052230.1	KEGG: tet:TTHERM_00584530 hypothetical protein; SPTR: uncharacterized protein
YP_004052231.1	KEGG: msl:Msil_2172 hypothetical protein; SPTR: uncharacterized protein
YP_004052232.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: zpr:ZPR_1290 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase
YP_004052233.1	KEGG: zpr:ZPR_3271 hypothetical protein; SPTR: uncharacterized protein
YP_004052234.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: sli:Slin_5560 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004052235.1	COGs: COG3654 Prophage maintenance system killer protein; InterPro IPR003812: IPR006440; KEGG: ana:alr9029 hypothetical protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: uncharacterized protein; TIGRFAM: death-on-curing family protein; PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein
YP_004052236.1	KEGG: rxy:Rxyl_2161 DNA-directed RNA polymerase subunit beta'; SPTR: uncharacterized protein
YP_004052237.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR007693: IPR007694: IPR003593: IPR007692; KEGG: aas:Aasi_0948 hypothetical protein; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA; SPTR: DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_004052238.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101; KEGG: chu:CHU_1348 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR:UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl -meso-diaminopimelateligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain
YP_004052239.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006055; KEGG: dfe:Dfer_3900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III epsilon chain; PFAM: Exonuclease
YP_004052240.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR013655: IPR003661: IPR003594: IPR 000014: IPR005467: IPR000700; KEGG: chu:CHU_3091 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Two-component hybrid sensor and regulator, putative; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052241.1	KEGG: dfe:Dfer_2899 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3109)
YP_004052242.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: dfe:Dfer_0345 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Membrane protein, putative; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052243.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR004680: IPR006037: IPR001898; KEGG: zpr:ZPR_0525 TrkA domain protein; PFAM: Citrate transporter; TrkA-C domain protein; SPTR: TrkA domain protein; PFAM: Citrate transporter; TrkA-C domain
YP_004052244.1	KEGG: cat:CA2559_10828 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004052245.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR001440: IPR003661: IPR003594: IPR 019734: IPR005467: IPR013026; KEGG: zpr:ZPR_0864 histidine kinase; PFAM: ATPase ATP-binding protein; hypothetical protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Tetratricopeptide repeat
YP_004052246.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR003593: IPR004483; KEGG: abi:Aboo_0955 DNA helicase; SMART: ATPase AAA; SPTR: DNA helicase, putative; TIGRFAM: DNA helicase; PFAM: Type III restriction enzyme, res subunit; TIGRFAM: DNA helicase, putative
YP_004052247.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: srm:SRM_02907 endonuclease/exonuclease/phosphatase family protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_004052248.1	KEGG: bmd:BMD_0333 hypothetical protein; SPTR: uncharacterized protein
YP_004052249.1	KEGG: chu:CHU_0410 hypothetical protein; SPTR: uncharacterized protein
YP_004052250.1	COGs: COG1609 Transcriptional regulators; InterPro IPR001761: IPR000843; KEGG: cat:CA2559_01255 LacI-family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_004052251.1	InterPro IPR012910: IPR000531: IPR001412; KEGG: zpr:ZPR_2449 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004052252.1	InterPro IPR012944; KEGG: zpr:ZPR_2448 SusD/RagB family protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family
YP_004052253.1	InterPro IPR011519; KEGG: zpr:ZPR_2447 FG-GAP repeat-containing protein; PFAM: ASPIC/UnbV domain protein; SPTR: FG-GAP repeat-containing protein; PFAM: ASPIC and UnbV
YP_004052254.1	InterPro IPR013517; KEGG: rmr:Rmar_1759 ASPIC/UnbV domain protein; PFAM: FG-GAP repeat protein; SPTR: uncharacterized protein; PFAM: ASPIC and UnbV; FG-GAP repeat
YP_004052255.1	InterPro IPR000326; KEGG: rbi:RB2501_08560 phosphoesterase, PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase, PA-phosphatase related protein; PFAM: PAP2 superfamily
YP_004052256.1	COGs: COG1626 Neutral trehalase; InterPro IPR001661: IPR018232; KEGG: cja:CJA_0284 trehalase, putative, tre37A; PFAM: glycoside hydrolase family 37; PRIAM: Alpha,alpha-trehalase; SPTR: Cytoplasmic trehalase; PFAM: Trehalase
YP_004052257.1	COGs: COG4146 symporter; InterPro IPR001734: IPR019900; KEGG: rmr:Rmar_2388 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_004052258.1	COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006589; KEGG: hor:Hore_22530 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Oligo-1,6-glucosidase; PFAM: Alpha amylase, catalytic domain
YP_004052259.1	KEGG: phe:Phep_1379 hypothetical protein; SPTR: uncharacterized protein
YP_004052260.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734: IPR019900; KEGG: gfo:GFO_1817 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_004052261.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659: IPR006665: IPR019734; KEGG: chu:CHU_2715 peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Peptidoglycan-associated lipoprotein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052262.1	InterPro IPR019775; KEGG: rbi:RB2501_13729 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_004052263.1	COGs: COG2094 3-methyladenine DNA glycosylase; InterPro IPR003180; KEGG: chu:CHU_1611 3-methyladenine DNA glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); PRIAM: DNA-3-methyladenine glycosylase II; SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg)
YP_004052264.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015: IPR006016; KEGG: cts:Ctha_0244 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: uncharacterized protein; PFAM: Universal stress protein family
YP_004052265.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR011659: IPR006665; KEGG: dfe:Dfer_4115 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052266.1	InterPro IPR001647; KEGG: bbe:BBR47_42000 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_004052267.1	COGs: COG1899 Deoxyhypusine synthase; InterPro IPR002773; KEGG: cpi:Cpin_0490 deoxyhypusine synthase; PFAM: deoxyhypusine synthase; SPTR: Deoxyhypusine synthase; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase
YP_004052268.1	InterPro IPR004827; KEGG: dtu:Dtur_0727 transglutaminase domain protein; SPTR: uncharacterized protein
YP_004052269.1	InterPro IPR002931; KEGG: chu:CHU_3645 transglutaminase-like enzyme; cysteine protease; PFAM: transglutaminase domain-containing protein; SPTR: Transglutaminase-like enzyme; cysteine protease; manually curated; PFAM: Transglutaminase-like superfamily
YP_004052270.1	COGs: COG2849 conserved hypothetical protein; InterProIPR001440: IPR011652: IPR019734: IPR013026: IPR 018337; KEGG: chu:CHU_2455 glucosyltransferase-S; PFAM: hypothetical protein; MORN variant repeat-containing protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat; MORN repeat variant
YP_004052271.1	InterPro IPR011110: IPR011123: IPR013249: IPR000792; KEGG: fjo:Fjoh_4178 periplasmic ligand-binding sensor protein; PFAM: Two component regulator three Y domain-containing protein; Two component regulator propeller; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; SPTR: periplasmic ligand-binding sensor protein; PFAM: Y_Y_Y domain; Bacterial regulatory proteins, luxR family
YP_004052272.1	InterPro IPR012910; KEGG: fjo:Fjoh_2431 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: outer membrane protein probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004052273.1	InterPro IPR012944: IPR019734: IPR013026; KEGG: zpr:ZPR_3693 outer membrane protein probably involved in nutrient binding; PFAM: RagB/SusD domain protein; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: SusD family
YP_004052274.1	InterPro IPR000601; KEGG: gfo:GFO_3466 glycosy hydrolase family protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Glycosyl hydrolase, family 16; PFAM: PKD domain
YP_004052275.1	COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757: IPR000601: IPR018247; KEGG: hoh:Hoch_4545 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; SPTR: Laminarinase; PFAM: Glycosyl hydrolases family 16
YP_004052276.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR002772: IPR019800; KEGG: zpr:ZPR_3690 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Beta-glucosidase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_004052277.1	COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: hor:Hore_02670 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; SPTR: Beta-glucanase; PFAM: Glycosyl hydrolases family 16
YP_004052278.1	InterPro IPR003663: IPR005829; KEGG: bmq:BMQ_1866 xylose permease; SPTR: Xylose permease; TIGRFAM: sugar transporter; PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_004052279.1	KEGG: pfh:PFHG_00176 conserved hypothetical protein; SPTR: Bifunctional preprotein translocase subunit SecD/SecF
YP_004052280.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: aas:Aasi_1051 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Hypothetical acyltransferase family protein; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004052281.1	COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: cyc:PCC7424_3026 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_004052282.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: gfo:GFO_2714 FMN-binding split barrel domain-containing protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: Protein containing FMN-binding split barrel domain; PFAM: Flavin reductase like domain
YP_004052283.1	COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR003593: IPR017871; KEGG: cbk:CLL_A2926 glycine betaine/L-proline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Glycine betaine/L-proline ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004052284.1	COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515: IPR007210; KEGG: cpi:Cpin_4963 binding-protein-dependent transport systems inner membrane component; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; Substrate binding domain of ABC-type glycine betaine transport system
YP_004052285.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015: IPR006016; KEGG: cpi:Cpin_0502 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; PFAM: Universal stress protein family
YP_004052286.1	InterPro IPR018639; KEGG: hma:rrnAC3022 hypothetical protein; PFAM: Protein of unknown function DUF2062; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2062)
YP_004052287.1	COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950: IPR017228; KEGG: bfr:BF4009 translation initiation factor SUI1; PFAM: translation initiation factor SUI1; SPTR: translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic
YP_004052288.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145: IPR006224; KEGG: sli:Slin_3406 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridylate synthase; PFAM: RNA pseudouridylate synthase
YP_004052289.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: pat:Patl_0737 Zn-dependent hydrolase of the beta-lactamase fold; SPTR: Zn-dependent hydrolase of the beta-lactamase fold
YP_004052290.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: pdi:BDI_1889 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004052291.1	KEGG: tdn:Suden_0109 hypothetical protein; SPTR: uncharacterized protein
YP_004052292.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685: IPR010916; KEGG: tdn:Suden_0108 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel
YP_004052293.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR011659: IPR006665; KEGG: chu:CHU_0217 outer membrane protein, porin F precursor; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein, porin F; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052294.1	KEGG: tet:TTHERM_01178660 hypothetical protein; SPTR: esophageal gland cell secretory protein 25
YP_004052295.1	KEGG: dfe:Dfer_1852 hypothetical protein; SPTR: uncharacterized protein
YP_004052296.1	KEGG: coc:Coch_2082 hypothetical protein; SPTR: uncharacterized protein
YP_004052297.1	COGs: COG1223 ATPase (AAA+ superfamily); InterPro IPR003959: IPR003593; KEGG: ttu:TERTU_4357 ATPase AAA, central region; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: ATPase AAA, central region; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004052298.1	InterPro IPR000209; KEGG: eck:EC55989_3267 conserved hypothetical protein serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: uncharacterized protein; PFAM: Subtilase family
YP_004052299.1	KEGG: ilo:IL1588 hypothetical protein; SPTR: Predicted membrane protein
YP_004052300.1	COGs: COG1002 Type II restriction enzyme methylase subunits; InterPro IPR002296: IPR002052; KEGG: gur:Gura_1723 hypothetical protein; SPTR: type IIS restriction/modification enzyme; PFAM: Eco57I restriction endonuclease
YP_004052301.1	COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; InterPro IPR001095: IPR020582: IPR011763; KEGG: chu:CHU_1517 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_004052302.1	KEGG: rbi:RB2501_06985 metallo-beta-lactamase superfamily protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily
YP_004052303.1	InterPro IPR018391; KEGG: mac:MA4312 cell surface protein; SPTR: Cell surface protein
YP_004052304.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_4239 patatin; PFAM: Patatin; SPTR: Patatin; PFAM: Patatin-like phospholipase
YP_004052305.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: gfo:GFO_0265 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004052306.1	COGs: COG0412 Dienelactone hydrolase; KEGG: rmr:Rmar_2600 carboxymethylenebutenolidase; SPTR: Dienelactone hydrolase and related enzyme; PFAM: Dienelactone hydrolase family
YP_004052307.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: chu:CHU_2629 OmpA family outer membrane protein; PFAM: OmpA/MotB domain protein; SPTR: Outer membrane protein, OmpA family; PFAM: OmpA family
YP_004052308.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130: IPR020892; KEGG: dfe:Dfer_3071 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_004052309.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: cat:CA2559_10968 uracil-DNA glycosylase; SPTR: ABC transporter, substrate binding protein, nitrate/sulfonate; PFAM: NMT1/THI5 like
YP_004052310.1	COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264: IPR001460; KEGG: zpr:ZPR_2556 bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_004052311.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR001440: IPR010822: IPR019734: IPR001932: IPR 013026; KEGG: mag:amb0187 serine phosphatase RsbU; PFAM: Stage II sporulation protein E; hypothetical protein; SMART: Tetratricopeptide repeat; protein phosphatase 2C domain protein; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE); Tetratricopeptide repeat
YP_004052312.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dfe:Dfer_1358 metallo-hydrolase/oxidoreductase; SPTR: metal-dependent hydrolase
YP_004052313.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR000815: IPR004099; KEGG: chu:CHU_3463 pyridine nucleotide-disulphide-related oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Pyridine nucleotide-disulphide-related oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004052314.1	COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); InterPro IPR001272: IPR015994; KEGG: cat:CA2559_01655 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (ATP); PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_004052315.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109: IPR005279: IPR018456; KEGG: hoh:Hoch_6851 amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: proton-dependent peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_004052316.1	KEGG: apb:SAR116_1429 hypothetical protein; SPTR: uncharacterized protein
YP_004052317.1	InterPro IPR018530; KEGG: dae:Dtox_4267 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004052318.1	KEGG: chu:CHU_2085 response regulator; SPTR: uncharacterized protein
YP_004052319.1	InterPro IPR019861; KEGG: chu:CHU_2464 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004052320.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: phe:Phep_0242 PKD domain containing protein; PFAM: PKD domain containing protein; SPTR: PKD; PFAM: PKD domain
YP_004052321.1	KEGG: pfh:PFHG_00085 conserved hypothetical protein; SPTR: uncharacterized protein
YP_004052322.1	COGs: COG1643 HrpA-like helicase; InterProIPR011545: IPR001650: IPR007502: IPR014001: IPR 010225: IPR014021; KEGG: chu:CHU_2491 ATP-dependent helicase; PFAM: helicase-associated domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB
YP_004052323.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: pmt:PMT0296 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: TPR repeat; PFAM: Tetratricopeptide repeat
YP_004052324.1	KEGG: chu:CHU_3121 hypothetical protein; SPTR: uncharacterized protein
YP_004052325.1	InterPro IPR003737; KEGG: zpr:ZPR_2320 secreted protein; PFAM: LmbE family protein; SPTR: GlcNAc-PI de-N-acetylase family; PFAM: GlcNAc-PI de-N-acetylase
YP_004052327.1	InterPro IPR000835; KEGG: dfe:Dfer_2423 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_004052328.1	InterPro IPR011637; KEGG: lic:LIC10613 hypothetical protein; PFAM: DoxX family protein; SPTR: uncharacterized protein
YP_004052329.1	KEGG: dfe:Dfer_3650 hypothetical protein; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_004052330.1	COGs: COG5276 conserved hypothetical protein; InterPro IPR013211; KEGG: sli:Slin_5493 hypothetical protein; PFAM: LVIVD repeat-containing protein; SPTR: uncharacterized protein; PFAM: LVIVD repeat
YP_004052331.1	KEGG: fsu:Fisuc_3104 hypothetical protein; SPTR: Predicted protein
YP_004052332.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: chu:CHU_1788 permease; PFAM: permease YjgP/YjgQ family protein; SPTR: permease, YjgP/YjgQ family; PFAM: Predicted permease YjgP/YjgQ family
YP_004052333.1	COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589: IPR005290; KEGG: chu:CHU_1787 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_004052334.1	COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR001247: IPR015847: IPR018111: IPR003029: IPR 012162: IPR004087: IPR004088; KEGG: chu:CHU_1786 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_004052335.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943: IPR009042: IPR007627: IPR007624: IPR 007630: IPR014284; KEGG: chu:CHU_1785 RNA polymerase sigma-70 factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma factor rpoD (Sigma-A); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004052336.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR000103: IPR013027: IPR005982; KEGG: dfe:Dfer_0086 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_004052337.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737: IPR000276; KEGG: nve:NEMVE_v1g224788 hypothetical protein; PFAM: LmbE family protein; SPTR: GlcNAc-PI de-N-acetylase family protein; PFAM: GlcNAc-PI de-N-acetylase
YP_004052338.1	InterPro IPR001173; KEGG: ppd:Ppro_0504 hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_004052339.1	COGs: COG0259 Pyridoxamine-phosphate oxidase; InterPro IPR011576: IPR019576: IPR000659: IPR019740; KEGG: amr:AM1_4597 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxine 5'-phosphate oxidase, dimerisation-like; pyridoxamine 5'-phosphate oxidase-related FMN-binding; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase
YP_004052340.1	COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: sde:Sde_2626 tRNA-(ms(2)io(6)A)-hydroxylase; PFAM: tRNA-hydroxylase; SPTR: TRNA (Ms(2)io(6)A)-hydroxylase; PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
YP_004052341.1	COGs: COG1678 transcriptional regulator protein; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: protein of unknown function DUF179; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1678
YP_004052342.1	InterPro IPR007139; KEGG: sli:Slin_2892 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF349)
YP_004052343.1	KEGG: tet:TTHERM_01087950 hypothetical protein; SPTR: uncharacterized protein
YP_004052344.1	KEGG: sli:Slin_1954 hypothetical protein; SPTR: uncharacterized protein
YP_004052345.1	InterPro IPR001387; KEGG: caa:Caka_1280 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix
YP_004052346.1	KEGG: cbl:CLK_3676 exonuclease SbcC; SPTR: Exonuclease SbcCD, C subunit
YP_004052347.1	KEGG: zpr:ZPR_3433 hypothetical protein; SPTR: uncharacterized protein
YP_004052348.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296: IPR003356: IPR002052; KEGG: mma:MM_1669 type I restriction-modification system specificity subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system specificity subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_004052349.1	KEGG: cpi:Cpin_3223 hypothetical protein; SPTR: uncharacterized protein
YP_004052350.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: pph:Ppha_0889 transcriptional regulator; PFAM: AAA-4 family protein; SPTR: transcriptional regulator; PFAM: Divergent AAA domain
YP_004052351.1	KEGG: spc:Sputcn32_3982 hypothetical protein; SPTR: uncharacterized protein
YP_004052352.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mbu:Mbur_0508 restriction modification system DNA specificity subunit; PFAM: restriction modification system DNA specificity domain; SPTR: Type I restriction-modification system specificity subunit; PFAM: Type I restriction modification DNA specificity domain
YP_004052353.1	COGs: COG4422 Bacteriophage protein gp37; InterPro IPR011101; KEGG: cph:Cpha266_1493 phage Gp37Gp68 family protein; PFAM: Gp37Gp68 family protein; SPTR: Phage Gp37Gp68 family protein; PFAM: Phage protein Gp37/Gp68
YP_004052354.1	KEGG: dal:Dalk_4264 hypothetical protein; SPTR: uncharacterized protein
YP_004052355.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409: IPR006935: IPR014001: IPR014021; KEGG: mac:MA2122 type I site-specific deoxyribonuclease; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; SPTR: Type I restriction-modification system restriction subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit
YP_004052356.1	KEGG: pfh:PFHG_04122 hypothetical protein; SPTR: Serine/threonine protein kinase, putative
YP_004052357.1	KEGG: fjo:Fjoh_1827 hypothetical protein; SPTR: uncharacterized protein
YP_004052359.1	InterPro IPR001387; KEGG: chu:CHU_3780 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family protein; PFAM: Helix-turn-helix
YP_004052360.1	COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893; KEGG: plt:Plut_1315 hypothetical protein; PFAM: HipA domain protein; SPTR: uncharacterized protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain
YP_004052361.1	InterPro IPR020135: IPR005632; KEGG: chu:CHU_3211 hypothetical protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: uncharacterized protein; PFAM: Outer membrane protein (OmpH-like)
YP_004052362.1	KEGG: tva:TVAG_331250 hypothetical protein; SPTR: uncharacterized protein
YP_004052363.1	KEGG: fjo:Fjoh_0601 hypothetical protein; SPTR: uncharacterized protein
YP_004052364.1	KEGG: bpo:BP951000_2245 DNA-directed RNA polymerase omega subunit family protein-like protein; SPTR: uncharacterized protein
YP_004052365.1	KEGG: chu:CHU_1524 hypothetical protein; SPTR: Lipoprotein, putative
YP_004052366.1	KEGG: pyo:PY07067 ring-infected erythrocyte surface antigen; SPTR: Ring-infected erythrocyte surface antigen
YP_004052367.1	InterPro IPR006530: IPR001434; KEGG: cpi:Cpin_4789 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: uncharacterized protein; TIGRFAM: conserved repeat domain protein; YD repeat protein; TIGRFAM: YD repeat (two copies); conserved repeat domain
YP_004052368.1	KEGG: sul:SYO3AOP1_0270 nucleoside-triphosphate--adenylate kinase; SPTR: Adenylate kinase
YP_004052369.1	KEGG: fjo:Fjoh_0606 YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: RHS repeat-associated core domain
YP_004052370.1	KEGG: lil:LA_1775 hypothetical protein; SPTR: uncharacterized protein
YP_004052371.1	InterPro IPR013838; KEGG: pml:ATP_00371 ABC-type cobalt transport system, permease component; SPTR: ABC-type cobalt transport system, permease component
YP_004052372.1	InterPro IPR002104; KEGG: bfs:BF4235 bacteriophage integrase; PFAM: integrase family protein; SPTR: Transposase; PFAM: Phage integrase family
YP_004052373.1	KEGG: coc:Coch_1246 hypothetical protein; SPTR: uncharacterized protein
YP_004052374.1	KEGG: coc:Coch_1247 hypothetical protein; SPTR: uncharacterized protein
YP_004052375.1	KEGG: cbf:CLI_1293 viral A-type inclusion repeat-containing protein; SPTR: uncharacterized protein
YP_004052376.1	KEGG: stp:Strop_2964 major facilitator transporter; SPTR: Major facilitator superfamily MFS_1
YP_004052377.1	InterPro IPR000601; KEGG: coc:Coch_1259 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: PKD domain containing protein
YP_004052378.1	KEGG: bmy:Bm1_14070 hypothetical protein; SPTR: uncharacterized protein
YP_004052379.1	KEGG: pfh:PFHG_01927 conserved hypothetical protein; SPTR: Conserved Plasmodium protein
YP_004052381.1	COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: sli:Slin_3565 protein of unknown function DUF418; PFAM: protein of unknown function DUF418; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF418)
YP_004052382.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: gfo:GFO_2644 two-component response transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system response regulator containing LytTR DNA-binding domain; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004052383.1	COGs: COG3920 Signal transduction histidine kinase; InterProIPR001440: IPR011495: IPR003594: IPR019734: IPR 013026; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; hypothetical protein; ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052384.1	COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744: IPR011883; KEGG: cgt:cgR_0650 hypothetical protein; PFAM: protein of unknown function DUF59; SPTR: Phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit
YP_004052385.1	COGs: COG3396 conserved hypothetical protein; InterPro IPR007814: IPR011882; KEGG: cpi:Cpin_0789 phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; SPTR: Phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit
YP_004052386.1	InterPro IPR009359; KEGG: cpi:Cpin_0788 phenylacetic acid degradation B; PFAM: phenylacetic acid degradation B; SPTR: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit
YP_004052387.1	KEGG: lhk:LHK_00815 diguanylate cyclase/phosphodiesterase domain 2; SPTR: Diguanylate cyclase/phosphodiesterase domain 2
YP_004052388.1	COGs: COG3396 conserved hypothetical protein; InterPro IPR007814: IPR011881; KEGG: cpi:Cpin_0787 phenylacetate-CoA oxygenase subunit PaaA; PFAM: phenylacetic acid catabolic family protein; SPTR: Phenylacetate-CoA oxygenase, PaaG subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit
YP_004052389.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: msv:Mesil_2065 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004052390.1	KEGG: sli:Slin_2677 hypothetical protein; SPTR: uncharacterized protein
YP_004052391.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: cpi:Cpin_4970 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Sensory transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052393.1	KEGG: chu:CHU_0282 hypothetical protein; SPTR: uncharacterized protein
YP_004052394.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR001440: IPR019734: IPR013026; KEGG: chu:CHU_0283 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide TPR_3
YP_004052395.1	COGs: COG0359 Ribosomal protein L9; InterPro IPR020070: IPR020069: IPR020594; KEGG: dfe:Dfer_2007 ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_004052396.1	COGs: COG0238 Ribosomal protein S18; InterPro IPR001648: IPR018275: IPR008271; KEGG: chu:CHU_2592 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_004052397.1	COGs: COG0360 Ribosomal protein S6; InterPro IPR020814: IPR000529; KEGG: chu:CHU_2591 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_004052398.1	KEGG: fph:Fphi_1631 hypothetical protein; SPTR: uncharacterized protein
YP_004052399.1	KEGG: osa:4339641 hypothetical protein; SPTR: uncharacterized protein
YP_004052400.1	InterPro IPR013655: IPR001610: IPR000014: IPR000700; KEGG: cpi:Cpin_0325 GAF sensor hybrid histidine kinase; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; SPTR: PAS domain S-box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_004052401.1	InterPro IPR018550; KEGG: cat:CA2559_01605 hypothetical protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL)
YP_004052402.1	KEGG: sli:Slin_5597 hypothetical protein; SPTR: uncharacterized protein
YP_004052403.1	InterPro IPR008854; KEGG: fps:FP1441 hypothetical protein; PFAM: thiopurine S-methyltransferase; SPTR: uncharacterized protein; PFAM: Thiopurine S-methyltransferase (TPMT)
YP_004052404.1	COGs: COG4122 O-methyltransferase; KEGG: dfe:Dfer_0196 O-methyltransferase-like protein; SPTR: uncharacterized protein; PFAM: O-methyltransferase
YP_004052405.1	COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG domain protein; SPTR: ApaG domain protein; PFAM: Protein of unknown function (DUF525)
YP_004052406.1	COGs: COG0692 Uracil DNA glycosylase; InterPro IPR005122: IPR002043: IPR018085: IPR005825; KEGG: chu:CHU_2586 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase
YP_004052407.1	COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611: IPR003591; KEGG: lic:LIC11098 hypothetical protein; PFAM: leucine-rich repeat-containing protein; SPTR: Leucine-rich repeat containing protein; PFAM: Leucine Rich Repeat
YP_004052408.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR001241: IPR000565: IPR003594: IPR013506: IPR 006171: IPR002288: IPR011557: IPR018522; KEGG: chu:CHU_1413 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATPase ATP-binding protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATPase ATP-binding protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_004052409.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839: IPR004838; KEGG: fjo:Fjoh_0516 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase; PFAM: Aminotransferase class I and II
YP_004052410.1	COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: fjo:Fjoh_0515 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_004052411.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sli:Slin_3469 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004052412.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: fps:FP1243 peptidase; SPTR: Probable peptidase; PFAM: Prolyl oligopeptidase family
YP_004052413.1	KEGG: pha:PSHAa0523 Na+/H+ antiporter; SPTR: NADH dehydrogenase subunit 2
YP_004052414.1	InterPro IPR001307; KEGG: cpi:Cpin_2395 hypothetical protein; SPTR: uncharacterized protein
YP_004052415.1	COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: cpi:Cpin_2396 transcriptional regulator, PadR-like family; PFAM: transcriptional regulator PadR family protein; SPTR: Conserved protein; PFAM: Transcriptional regulator PadR-like family
YP_004052416.1	KEGG: bth:BT_3234 hypothetical protein; SPTR: uncharacterized protein
YP_004052418.1	COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: sli:Slin_2997 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_004052419.1	InterPro IPR011935; KEGG: zpr:ZPR_2072 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein
YP_004052420.1	KEGG: bha:BH1959 hypothetical protein; SPTR: uncharacterized protein
YP_004052421.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792: IPR001789; KEGG: cat:CA2559_05930 DNA-binding response regulator, LuxR family protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: DNA-binding response regulator, LuxR family protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004052422.1	COGs: COG3920 Signal transduction histidine kinase; InterProIPR011110: IPR011123: IPR011495: IPR003594: IPR 005467; KEGG: phe:Phep_2726 ATPase ATP-binding protein; PFAM: histidine kinase dimerisation/phosphoacceptor; Two component regulator three Y domain-containing protein; Two component regulator propeller; ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: ATPase ATP-binding protein; PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller
YP_004052423.1	COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708: IPR019998: IPR020001; KEGG: sli:Slin_2014 membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein; SPTR: inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_004052424.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR017456: IPR000991: IPR004468: IPR017926; KEGG: chu:CHU_2536 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_004052425.1	KEGG: cat:CA2559_08941 hypothetical protein; SPTR: uncharacterized protein
YP_004052426.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: fba:FIC_01344 ribosomal RNA small subunit methyltransferase G; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_004052427.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249: IPR008263; KEGG: chu:CHU_1195 RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor SigW; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004052428.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: phe:Phep_1431 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_004052429.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR004803: IPR002616; KEGG: dfe:Dfer_3359 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_004052430.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_004052431.1	InterPro IPR000620; KEGG: sli:Slin_2955 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Predicted permease; PFAM: EamA-like transporter family
YP_004052432.1	KEGG: fsu:Fisuc_0063 hypothetical protein; SPTR: uncharacterized protein
YP_004052433.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterPro IPR004424: IPR006204; KEGG: cpi:Cpin_3757 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_004052434.1	COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: dfe:Dfer_3649 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier-protein] reductase
YP_004052435.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: rmr:Rmar_1058 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Transporter, MscS family; PFAM: Mechanosensitive ion channel
YP_004052436.1	COGs: COG0579 dehydrogenase; InterPro IPR013027: IPR006076; KEGG: sli:Slin_5628 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004052437.1	COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002307: IPR002305: IPR002942: IPR001412; KEGG: pgi:PG0263 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_004052438.1	COGs: COG2996 conserved hypothetical protein; InterPro IPR014464; KEGG: dfe:Dfer_5129 RNA binding S1 domain protein; SPTR: uncharacterized protein
YP_004052439.1	InterPro IPR005358; KEGG: gfo:GFO_2400 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_004052440.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790: IPR010372; KEGG: chu:CHU_1537 hypothetical protein; PFAM: DNA polymerase III delta; SPTR: uncharacterized protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_004052441.1	InterPro IPR001440: IPR019734: IPR006597: IPR013026; KEGG: chu:CHU_1538 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004052442.1	KEGG: sli:Slin_2039 hypothetical protein; SPTR: uncharacterized protein
YP_004052443.1	InterPro IPR007730; KEGG: shi:Shel_01710 polyphosphate kinase; PFAM: Sporulation domain-containing protein; SPTR: Polyphosphate kinase; PFAM: Sporulation related domain
YP_004052444.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: zpr:ZPR_3934 MotA/TolQ/ExbB family biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1
YP_004052445.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: aas:Aasi_0054 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1
YP_004052446.1	KEGG: sli:Slin_1995 hypothetical protein; SPTR: uncharacterized protein
YP_004052447.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645: IPR013221: IPR017963: IPR018109; KEGG: bvu:BVU_2328 folylpolyglutamate synthase; PFAM: Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: Folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_004052448.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: chu:CHU_1543 tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; SPTR: TRNA (Guanine-N(7))-methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_004052449.1	InterPro IPR000326; KEGG: cts:Ctha_0665 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase PA-phosphatase related; PFAM: PAP2 superfamily
YP_004052450.1	COGs: COG3608 deacylase; InterPro IPR007036; KEGG: fps:FP0221 hypothetical protein; PFAM: Succinylglutamate desuccinylase/aspartoacylase; SPTR: Succinylglutamate desuccinylase/aspartoacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family
YP_004052451.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: coc:Coch_0716 sugar transferase; PFAM: sugar transferase; SPTR: galactosyltransferase; PFAM: Bacterial sugar transferase
YP_004052452.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dfe:Dfer_4011 two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004052453.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterProIPR002347: IPR002198: IPR020904: IPR003016: IPR 005479; KEGG: gfo:GFO_1525 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase
YP_004052454.1	KEGG: gfo:GFO_0457 protease B; SPTR: Protease B; PFAM: Dual-action HEIGH metallo-peptidase
YP_004052455.1	KEGG: gfo:GFO_1939 hypothetical protein; SPTR: uncharacterized protein
YP_004052456.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR016366: IPR011703; KEGG: gfo:GFO_1938 MoxR-like AAA family ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: MoxR-like AAA family ATPase; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004052457.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: gfo:GFO_1937 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004052458.1	InterPro IPR011933; KEGG: gfo:GFO_1936 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain
YP_004052459.1	KEGG: zpr:ZPR_1950 membrane protein; SPTR: uncharacterized protein
YP_004052460.1	KEGG: zpr:ZPR_1951 membrane protein; SPTR: uncharacterized protein
YP_004052461.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933; KEGG: lic:LIC13491 metallopeptidase; PFAM: peptidase M20; SPTR: protease; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_004052462.1	KEGG: tdn:Suden_0374 ComEC/Rec2-related protein; SPTR: uncharacterized protein
YP_004052463.1	KEGG: sli:Slin_1752 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2452)
YP_004052464.1	COGs: COG1794 Aspartate racemase; InterPro IPR004380: IPR015942: IPR018187; KEGG: rbi:RB2501_09150 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; SPTR: aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase
YP_004052465.1	KEGG: mdo:100027300 hypothetical protein LOC100027300; SPTR: Periodic tryptophan protein 2 homolog
YP_004052466.1	InterPro IPR011576; KEGG: pub:SAR11_1197 flavin mononucleotide binding protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_004052467.1	COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: sli:Slin_6283 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor; PFAM: RF-1 domain
YP_004052468.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: cts:Ctha_1885 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Sensor histidine kinase/response regulator, putative; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052469.1	COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR004624: IPR013987: IPR013988; KEGG: chu:CHU_1339 alkylphosphonate uptake protein; PFAM: PhnA protein; SPTR: Alkylphosphonate uptake protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA
YP_004052470.1	KEGG: dfe:Dfer_5116 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase
YP_004052471.1	KEGG: ptr:739222 hypothetical protein LOC739222; SPTR: uncharacterized protein
YP_004052472.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR004514: IPR020060: IPR020058: IPR020059: IPR 001412; KEGG: fjo:Fjoh_1012 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_004052473.1	KEGG: apt:APA01_21560 outer membrane protein; SPTR: Outer membrane protein
YP_004052474.1	InterPro IPR003410; KEGG: spu:588541 similar to egg bindin receptor 1 precursor; PFAM: Hyalin; SPTR: Secreted protein containing hyalin domain; PFAM: HYR domain
YP_004052475.1	InterPro IPR019861; KEGG: fjo:Fjoh_3477 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004052476.1	InterPro IPR011659: IPR013026; KEGG: fjo:Fjoh_4540 OmpA/MotB domain-containing protein; PFAM: hypothetical protein; SPTR: Immunogenic 75 kDa protein PG4, putative; PFAM: WD40-like Beta Propeller Repeat
YP_004052477.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: chu:CHU_2577 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Response Regulator Receiver Signal Transduction Histidine Kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052478.1	KEGG: ate:Athe_1020 hypothetical protein; SPTR: uncharacterized protein
YP_004052479.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR011777: IPR003042: IPR008671; KEGG: cpi:Cpin_0830 geranylgeranyl reductase; PFAM: Lycopene beta and epsilon cyclase; SPTR: Geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase family
YP_004052480.1	KEGG: rbi:RB2501_05435 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_004052481.1	KEGG: amd:AMED_2632 hypothetical protein; SPTR: uncharacterized protein
YP_004052482.1	COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: rde:RD1_0722 hypothetical protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: Beta-Ig-H3/Fasciclin; PFAM: Fasciclin domain
YP_004052483.1	COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004805: IPR004013: IPR011708: IPR003141; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_004052484.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: fba:FIC_01143 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family
YP_004052485.1	InterPro IPR004119: IPR015897; KEGG: dre:797003 hypothetical LOC797003; PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF227)
YP_004052486.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760: IPR020583; KEGG: caa:Caka_0241 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: Inositol monophosphatase family; PFAM: Inositol monophosphatase family
YP_004052487.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: cat:CA2559_10158 short-chain dehydrogenase; SPTR: Short-chain dehydrogenase; PFAM: short chain dehydrogenase
YP_004052488.1	InterPro IPR002156; KEGG: pca:Pcar_2273 RNase HI; SPTR: RNase HI; PFAM: RNase H
YP_004052489.1	COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: rbi:RB2501_14909 hypothetical protein; PFAM: amidohydrolase 2; SPTR: Amidohydrolase 2; PFAM: Amidohydrolase
YP_004052490.1	KEGG: dfe:Dfer_3622 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_004052491.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR011659: IPR006665; KEGG: chu:CHU_2185 outer membrane protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052492.1	KEGG: cgr:CAGL0C05071g hypothetical protein; SPTR: Strain CBS138 chromosome C complete sequence
YP_004052493.1	KEGG: tet:TTHERM_00476750 hypothetical protein; SPTR: K14
YP_004052494.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: cat:CA2559_00245 site-specific DNA-methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004052495.1	KEGG: eli:ELI_02550 hypothetical protein; SPTR: uncharacterized protein
YP_004052496.1	COGs: COG1204 Superfamily II helicase; InterProIPR011545: IPR014001: IPR006555: IPR014021: IPR 018247; KEGG: seh:SeHA_C1592 helicase C2; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase c2; SPTR: Helicase c2; PFAM: DEAD/DEAH box helicase
YP_004052497.1	KEGG: hypothetical protein; SPTR: Uncharacterized protein MJ1672
YP_004052498.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437: IPR018151; KEGG: ctu:Ctu_39150 transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: GreA/GreB family elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreB
YP_004052499.1	KEGG: dra:DR_0948 hypothetical protein; SPTR: uncharacterized protein; PFAM: AhpC/TSA family
YP_004052500.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: scl:sce9319 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004052501.1	COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR011815: IPR001264: IPR001460: IPR009647; KEGG: fps:FP2234 membrane carboxypeptidase/penicillin-binding protein PbpC; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; PRIAM: Peptidoglycan glycosyltransferase; SPTR: uncharacterized protein; TIGRFAM: penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C
YP_004052502.1	COGs: COG2852 conserved hypothetical protein; KEGG: fta:FTA_1030 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF559)
YP_004052503.1	COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890: IPR011625; KEGG: cpi:Cpin_0163 alpha-2-macroglobulin domain protein; PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; SPTR: Alpha-2-macroglobulin domain protein; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin MG1 domain
YP_004052504.1	COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: rbi:RB2501_03305 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function
YP_004052505.1	COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: sli:Slin_6521 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004052506.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sus:Acid_5000 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004052507.1	InterPro IPR008671; KEGG: fjo:Fjoh_0926 lycopene beta and epsilon cyclase; PFAM: Lycopene beta and epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; PFAM: Lycopene cyclase protein
YP_004052508.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR003661: IPR003594: IPR005467: IPR 017441; KEGG: chu:CHU_3468 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052509.1	COGs: COG0541 Signal recognition particle GTPase; InterProIPR004780: IPR013822: IPR000897: IPR004125: IPR 003593; KEGG: chu:CHU_2754 signal recognition particle subunit FFH/SRP54 (SRP54); PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: ATPase AAA; SPTR: Signal recognition particle protein; TIGRFAM: signal recognition particle protein; manually curated; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_004052510.1	COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001440: IPR019734: IPR013026; KEGG: sli:Slin_1991 tetratricopeptide TPR_2 repeat protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat
YP_004052511.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_5130 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Protein of unknown function (DUF1416)
YP_004052512.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594: IPR005467; KEGG: cpi:Cpin_2585 histidine kinase; PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATPase ATP-binding protein; SMART: histidine kinase A domain protein; ATPase ATP-binding protein; SPTR: Sensor histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052513.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: cpi:Cpin_2586 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004052514.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014: IPR004358: IPR013655: IPR013767: IPR 003661: IPR003594: IPR001789: IPR001610: IPR005467: IPR000700; KEGG: zpr:ZPR_2293 two-component system sensor histidine kinase/response regulator hybrid; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: PAS/PAC domain protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052515.1	InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A domain
YP_004052516.1	KEGG: dfe:Dfer_3845 hypothetical protein; SPTR: uncharacterized protein
YP_004052517.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881: IPR002035: IPR013838; KEGG: dfe:Dfer_3844 hypothetical protein; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004052518.1	KEGG: dfe:Dfer_3843 hypothetical protein; SPTR: uncharacterized protein
YP_004052519.1	COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR005747: IPR000432: IPR002625: IPR007696; KEGG: sli:Slin_0268 Smr protein/MutS2; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: Smr protein/MutS2; TIGRFAM: MutS2 family protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_004052520.1	COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: nfa:nfa1540 two-component system response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator; PFAM: Response regulator receiver domain
YP_004052521.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR004358: IPR003594: IPR005467; KEGG: amr:AM1_0287 signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Sensory transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052522.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR004358: IPR013767: IPR013655: IPR 003661: IPR003594: IPR001610: IPR005467: IPR000700; KEGG: cyn:Cyan7425_3017 multi-sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052523.1	InterPro IPR019861; KEGG: chu:CHU_3655 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004052524.1	InterProIPR010221: IPR002126: IPR001304: IPR000601: IPR 007110: IPR018120; KEGG: mmw:Mmwyl1_1672 beta strand repeat-containing protein; PFAM: Cadherin; C-type lectin domain protein; SMART: Cadherin; PKD domain containing protein; SPTR: Autotransporter-associated beta strand repeat protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Cadherin domain
YP_004052525.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR: uncharacterized protein
YP_004052526.1	KEGG: fps:FP1547 hypothetical protein; SPTR: uncharacterized protein
YP_004052527.1	KEGG: cat:CA2559_11618 hypothetical protein; SPTR: uncharacterized protein
YP_004052528.1	KEGG: fps:FP1550 hypothetical protein; SPTR: uncharacterized protein
YP_004052530.1	KEGG: pkn:PKH_100011 hypothetical protein; SPTR: uncharacterized protein
YP_004052531.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: chu:CHU_2947 hypothetical protein; PFAM: AAA-4 family protein; SPTR: uncharacterized protein; PFAM: Divergent AAA domain
YP_004052532.1	KEGG: chu:CHU_2948 hypothetical protein; SPTR: uncharacterized protein
YP_004052533.1	KEGG: chu:CHU_2948 hypothetical protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052534.1	KEGG: hse:Hsero_4096 hypothetical protein; SPTR: uncharacterized protein
YP_004052535.1	KEGG: plm:Plim_1075 hypothetical protein; SPTR: uncharacterized protein
YP_004052536.1	KEGG: gga:424958 replication factor C (activator 1) 4, 37kDa; SPTR: uncharacterized protein
YP_004052537.1	KEGG: msu:MS0110 hypothetical protein; SPTR: uncharacterized protein
YP_004052538.1	COGs: COG2356 Endonuclease I; InterPro IPR007346; KEGG: oih:OB2858 extracellular ribonuclease; PFAM: Endonuclease I; SPTR: Extracellular ribonuclease; PFAM: Endonuclease I
YP_004052539.1	KEGG: apa:APP7_0703 Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase
YP_004052540.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: fps:FP2274 type II modification methyltransferase HpaII; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004052541.1	KEGG: tet:TTHERM_00691830 hypothetical protein; SPTR: Pantoate-beta-alanine ligase
YP_004052542.1	InterPro IPR019062; KEGG: btk:BT9727_0842 type II restriction enzyme HpaII (endonuclease HpaII); PFAM: Restriction endonuclease, type II, HpaII; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II restriction enzyme HpaII (Endonuclease HpaII); PFAM: HpaII restriction endonuclease
YP_004052543.1	KEGG: vvi:100248376 hypothetical protein LOC100248376; SPTR: Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x
YP_004052544.1	KEGG: pfa:PF14_0170 NOT family protein, putative; SPTR: NOT family protein, putative
YP_004052545.1	KEGG: rpb:RPB_2529 hypothetical protein; SPTR: uncharacterized protein
YP_004052546.1	KEGG: chu:CHU_1184 hypothetical protein; SPTR: uncharacterized protein; PFAM: AAA domain (dynein-related subfamily)
YP_004052547.1	KEGG: fps:FP1538 hypothetical protein; SPTR: uncharacterized protein
YP_004052548.1	KEGG: zpr:ZPR_2233 DNA-binding protein; SPTR: DNA-binding protein
YP_004052549.1	InterPro IPR011260; KEGG: ttj:TTHA1664 DNA-directed RNA polymerase subunit alpha; SPTR: DNA-directed RNA polymerase subunit alpha
YP_004052550.1	KEGG: fps:FP1574 hypothetical protein; SPTR: uncharacterized protein
YP_004052551.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: zpr:ZPR_2218 transposase; PFAM: integrase family protein; SPTR: transposase; PFAM: Phage integrase family
YP_004052552.1	COGs: COG3825 conserved hypothetical protein; KEGG: sfu:Sfum_1614 hypothetical protein; SPTR: uncharacterized protein
YP_004052553.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: prw:PsycPRwf_1719 ATPase central domain-containing protein; PFAM: ATPase associated with various cellular activities AAA_5; SPTR: ATPase AAA, central domain protein; PFAM: AAA domain (dynein-related subfamily)
YP_004052554.1	KEGG: bvu:BVU_0765 hypothetical protein; SPTR: uncharacterized protein
YP_004052555.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR007895: IPR003661: IPR003594: IPR 005467; KEGG: cyp:PCC8801_2163 histidine kinase; PFAM: MASE1 domain protein; histidine kinase A domain protein; ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Two-component hybrid sensor and regulator, putative; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; MASE1
YP_004052556.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR008756: IPR016047: IPR002508; KEGG: cat:CA2559_07981 TonB; PFAM: Peptidase M23; peptidase M56 BlaR1; cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: M23/M37 peptidase domain protein; PFAM: BlaR1 peptidase M56; N-acetylmuramoyl-L-alanine amidase; Peptidase family M23
YP_004052557.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: fjo:Fjoh_1362 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor
YP_004052558.1	COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: gfo:GFO_2391 sodium:alanine symporter family protein; PFAM: sodium:alanine symporter; SPTR: Sodium:alanine symporter family protein; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein
YP_004052559.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: cpi:Cpin_3628 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004052560.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bth:BT_1458 two-component system sensor histidine kinase; PFAM: histidine kinase internal region; SPTR: Signaling protein without kinase domain; PFAM: Histidine kinase
YP_004052562.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: rcu:RCOM_0330130 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Hydrolase, alpha/beta hydrolase fold family, putative; PFAM: esterase
YP_004052563.1	KEGG: chu:CHU_2401 hypothetical protein; SPTR: uncharacterized protein
YP_004052564.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: kko:Kkor_2081 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase family enzyme; PFAM: Amidohydrolase family
YP_004052565.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rmr:Rmar_1357 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004052566.1	KEGG: gfo:GFO_0867 hypothetical protein; SPTR: uncharacterized protein
YP_004052567.1	KEGG: tra:Trad_2511 hypothetical protein; SPTR: uncharacterized protein
YP_004052568.1	KEGG: pph:Ppha_1909 hypothetical protein; SPTR: uncharacterized protein
YP_004052569.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5746 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; PFAM: LytTr DNA-binding domain
YP_004052570.1	InterPro IPR012441; KEGG: acl:ACL_0934 hypothetical protein; PFAM: protein of unknown function DUF1643; SPTR: Uncharacterized protein conserved in bacteria; PFAM: Protein of unknown function (DUF1643)
YP_004052571.1	COGs: COG2366 Protein related to penicillin acylase; InterPro IPR014395: IPR002692; KEGG: hoh:Hoch_3571 glutaryl-7-aminocephalosporanic-acid acylase; PFAM: peptidase S45 penicillin amidase; PRIAM: Acyl-homoserine-lactone acylase; SPTR: Penicillin amidase family protein; PFAM: Penicillin amidase
YP_004052572.1	COGs: COG3781 membrane protein; KEGG: cpi:Cpin_2003 protein of unknown function UPF0187; SPTR: uncharacterized protein; manually curated; PFAM: Bestrophin
YP_004052573.1	InterPro IPR016047; KEGG: dfe:Dfer_3924 peptidase M23; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase family M23
YP_004052574.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR002364; KEGG: gfo:GFO_1929 zinc-type alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004052575.1	KEGG: ami:Amir_5100 TIMP2; TIMP metallopeptidase inhibitor 2; SPTR: uncharacterized protein; PFAM: TiSSUe inhibitor of metalloproteinase
YP_004052576.1	InterPro IPR000073; KEGG: mma:MM_3198 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: uncharacterized protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family)
YP_004052577.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: bth:BT_4328 16S ribosomal RNA methyltransferase RsmE; PFAM: protein of unknown function DUF558; SPTR: uncharacterized protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_004052578.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: chu:CHU_3091 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052579.1	KEGG: gfo:GFO_0266 hypothetical protein; SPTR: uncharacterized protein
YP_004052580.1	COGs: COG0135 Phosphoribosylanthranilate isomerase; KEGG: dfe:Dfer_2823 hypothetical protein; SPTR: uncharacterized protein; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_004052581.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: gfo:GFO_1928 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator (MarR family) protein; PFAM: MarR family
YP_004052582.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: lla:L0198 glutathione peroxidase; PFAM: glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase
YP_004052583.1	KEGG: lbf:LBF_1051 hypothetical protein; SPTR: uncharacterized protein
YP_004052584.1	KEGG: nve:NEMVE_v1g242264 hypothetical protein; SPTR: uncharacterized protein
YP_004052585.1	InterPro IPR006046: IPR006047: IPR015237: IPR006589; KEGG: fjo:Fjoh_1948 cytoplasmic alpha-amylase; PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; SPTR: Candidate alpha amylase; Glycoside hydrolase family 13; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF1939)
YP_004052586.1	InterPro IPR001789; KEGG: zmn:Za10_1485 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain
YP_004052587.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: lic:LIC10282 zinc-binding dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Zn-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004052588.1	KEGG: sli:Slin_1651 hypothetical protein; SPTR: Lipoprotein, putative
YP_004052589.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506; KEGG: aas:Aasi_1200 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_004052590.1	InterPro IPR000866: IPR017936; KEGG: tth:TT_P0168 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family
YP_004052591.1	COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: kko:Kkor_0563 natural resistance-associated macrophage protein; PFAM: natural resistance-associated macrophage protein; SPTR: Mn2+/Fe2+ transporter, NRAMP family protein; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters
YP_004052592.1	COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: bcy:Bcer98_2060 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: UPF0271 protein Bcer98_2060; PFAM: LamB/YcsF family
YP_004052593.1	COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR010016: IPR003833; KEGG: oih:OB2678 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: uncharacterized protein; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370
YP_004052594.1	COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003778; KEGG: bbe:BBR47_26540 hypothetical protein; PFAM: Allophanate hydrolase subunit 2; PRIAM: Urea carboxylase; SMART: Allophanate hydrolase subunit 2; SPTR: uncharacterized protein; PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotin-dependent carboxylase uncharacterized domain
YP_004052595.1	KEGG: gfo:GFO_2211 hypothetical protein; SPTR: uncharacterized protein
YP_004052596.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660; KEGG: zpr:ZPR_0339 hypothetical protein; PFAM: arsenate reductase and related; SPTR: ArsC family protein; PFAM: ArsC family
YP_004052597.1	KEGG: chu:CHU_2333 hypothetical protein; SPTR: uncharacterized protein
YP_004052598.1	KEGG: chu:CHU_1606 hypothetical protein; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004052599.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: fjo:Fjoh_1432 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_004052600.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_1583 ROK family protein; PFAM: ROK family protein; SPTR: ROK; PFAM: ROK family
YP_004052601.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545: IPR001650: IPR014001: IPR014021: IPR 014014: IPR000629; KEGG: cat:CA2559_09353 ATP-dependent RNA helicase, DEAD/DEAH box family protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase, DEAD/DEAH box family protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004052602.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545: IPR001650: IPR014001: IPR014021: IPR 014014: IPR000629; KEGG: chu:CHU_1658 DEAD box-related helicase (ATP-dependent RNA helicase); PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD box-related helicase (ATP-dependent RNA helicase); PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004052603.1	COGs: COG3452 periplasmic ligand-binding sensor domain; InterPro IPR000014: IPR006189: IPR013656: IPR013767; KEGG: gfo:GFO_0149 two-component system sensor histidine kinase; PFAM: PAS fold domain protein; PAS fold-4 domain protein; CHASE domain protein; SMART: PAS domain containing protein; SPTR: Two-component system sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CHASE domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052604.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gfo:GFO_1940 DNA gyrase modulator family protein; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62, modulator of DNA gyrase; PFAM: modulator of DNA gyrase
YP_004052605.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR006311: IPR002510; KEGG: gfo:GFO_1941 DNA gyrase modulator family protein; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Twin-arginine translocation pathway signal; PFAM: modulator of DNA gyrase
YP_004052606.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: rlt:Rleg2_5155 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif
YP_004052607.1	InterPro IPR011600; KEGG: dol:Dole_2005 peptidase C14 caspase catalytic subunit P20; PFAM: peptidase C14 caspase catalytic subunit p20; SPTR: Peptidase; PFAM: Caspase domain
YP_004052608.1	InterProIPR002909: IPR013517: IPR003961: IPR001791: IPR 006558: IPR000276; KEGG: sru:SRU_1454 hypothetical protein; PFAM: cell surface receptor IPT/TIG domain protein; FG-GAP repeat protein; Fibronectin type III domain protein; SMART: LamG domain protein jellyroll fold domain protein; Laminin G; Fibronectin type III domain protein; SPTR: uncharacterized protein; PFAM: Laminin G domain
YP_004052609.1	KEGG: ter:Tery_1906 Na-Ca exchanger/integrin-beta4; SPTR: uncharacterized protein
YP_004052610.1	COGs: COG0225 Peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: cat:CA2559_08631 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_004052611.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: aas:Aasi_0827 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004052612.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743: IPR002205: IPR006691; KEGG: chu:CHU_1682 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA gyrase A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit
YP_004052613.1	KEGG: aas:Aasi_1391 hypothetical protein; SPTR: uncharacterized protein
YP_004052614.1	KEGG: sso:SSO2281 bifunctional phosphoglucose/phosphomannose isomerase; SPTR: Bifunctional phosphoglucose/phosphomannose isomerase
YP_004052615.1	KEGG: pru:PRU_2668 AraC family transcriptional regulator; SPTR: PAS/PAC sensor signal transduction histidine kinase
YP_004052616.1	COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670: IPR018211; KEGG: fjo:Fjoh_0760 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_004052617.1	KEGG: chu:CHU_3774 histidine kinase; SPTR: uncharacterized protein
YP_004052618.1	InterPro IPR000462; KEGG: fps:FP1646 CDP-alcohol phosphatidyltransferase class-I family protein; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase class-I family protein; PFAM: CDP-alcohol phosphatidyltransferase
YP_004052619.1	COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: sli:Slin_2216 ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_004052620.1	InterPro IPR001706: IPR021137: IPR018265; KEGG: aas:Aasi_0561 hypothetical protein; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_004052621.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR001288: IPR019814: IPR019815: IPR019813; KEGG: sli:Slin_2218 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_004052622.1	COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR002320: IPR018158: IPR004095: IPR012947: IPR 002314: IPR004154: IPR006195; KEGG: sli:Slin_2219 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; SPTR: Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_004052623.1	KEGG: sce:YDR356W Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner; SPTR: uncharacterized protein
YP_004052624.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: chu:CHU_0488 uracil phosphoribosyltransferase/pyrimidine operon attenuation protein; PFAM: phosphoribosyltransferase; SPTR: PyrR bifunctional protein; PFAM: Phosphoribosyl transferase domain
YP_004052625.1	COGs: COG1522 Transcriptional regulators; InterPro IPR000485: IPR019887: IPR019888: IPR019885; KEGG: dfe:Dfer_3786 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Probable transcription regulator protein; PFAM: AsnC family
YP_004052626.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873: IPR020845; KEGG: zpr:ZPR_3061 O-succinylbenzoyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: O-succinylbenzoic acid-CoA ligase; PFAM: AMP-binding enzyme
YP_004052627.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639: IPR000073; KEGG: pmy:Pmen_0672 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: Predicted Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) protein; PFAM: alpha/beta hydrolase fold
YP_004052628.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: mxa:MXAN_6060 amine oxidase, flavin-containing; PFAM: amine oxidase; SPTR: Oxidoreductase, FAD-binding protein; PFAM: Flavin containing amine oxidoreductase
YP_004052629.1	KEGG: dan:Dana_GF11555 GF11555 gene product from transcript GF11555-RA; SPTR: GF11555
YP_004052630.1	COGs: COG4864 conserved hypothetical protein; KEGG: aas:Aasi_1337 hypothetical protein; SPTR: UPF0365 protein Aasi_1337; PFAM: SigmaW regulon antibacterial
YP_004052631.1	InterPro IPR001611; KEGG: ctc:CTC00494 internalin A-like protein/S-layer protein; SPTR: Internalin A-like protein/S-layer protein; PFAM: Leucine Rich Repeat
YP_004052632.1	KEGG: sli:Slin_6465 hypothetical protein; SPTR: uncharacterized protein
YP_004052633.1	KEGG: dfe:Dfer_3581 hypothetical protein; SPTR: uncharacterized protein
YP_004052634.1	KEGG: ddi:DDB_G0285815 hypothetical protein; SPTR: uncharacterized protein
YP_004052635.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: sli:Slin_2032 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: Silent information regulator protein Sir2; PFAM: Sir2 family
YP_004052636.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078: IPR003016; KEGG: chu:CHU_2527 dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: 2-oxo acid dehydrogenases acyltransferase (Catalytic domain) protein; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme
YP_004052638.1	COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135: IPR008136: IPR001453; KEGG: sli:Slin_1357 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: competence-damage inducible; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain
YP_004052639.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209: IPR000601: IPR002052; KEGG: chu:CHU_2524 subtilisin-like serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; SPTR: Subtilisin-like serine protease; PFAM: Subtilase family
YP_004052640.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR011975: IPR015590; KEGG: cpi:Cpin_1136 phenylacetic acid degradation protein PaaN; PFAM: Aldehyde Dehydrogenase; SPTR: Phenylacetic acid degradation protein paaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde dehydrogenase family; TIGRFAM: phenylacetic acid degradation protein paaN
YP_004052641.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789; KEGG: hoh:Hoch_4644 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004052642.1	InterPro IPR013097; KEGG: gfo:GFO_3068 hypothetical protein; PFAM: Stress responsive alpha-beta barrel domain-containing protein; SPTR: uncharacterized protein; PFAM: Stress responsive A/B Barrel Domain
YP_004052643.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: hoh:Hoch_3168 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: mechanosensitive channel protein (MscS family); PFAM: Mechanosensitive ion channel
YP_004052644.1	COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: cat:CA2559_07175 hypothetical protein; PFAM: protein of unknown function DUF159; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG2135
YP_004052645.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593: IPR017871; KEGG: chu:CHU_1763 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004052646.1	KEGG: sli:Slin_4765 hypothetical protein; SPTR: uncharacterized protein
YP_004052647.1	KEGG: mla:Mlab_1712 hypothetical protein; SPTR: uncharacterized protein
YP_004052648.1	KEGG: rcu:RCOM_1686400 copper-transporting atpase p-type, putative
YP_004052649.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: chu:CHU_1410 hypothetical protein; SPTR: MORN variant repeat protein; PFAM: MORN repeat variant
YP_004052650.1	InterPro IPR020003; KEGG: cpi:Cpin_1395 YD repeat protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain
YP_004052651.1	KEGG: fjo:Fjoh_4292 integral membrane sensor signal transduction histidine kinase; SPTR: uncharacterized protein
YP_004052652.1	InterPro IPR002328; KEGG: cpi:Cpin_1395 YD repeat protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain
YP_004052653.1	InterPro IPR006530; KEGG: phe:Phep_1097 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies)
YP_004052654.1	KEGG: mcp:MCAP_0862 hypothetical protein; SPTR: Membrane protein, putative
YP_004052655.1	COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: dfe:Dfer_4076 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_004052656.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: zpr:ZPR_4559 multidrug resistance protein D; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance plasma membrane protein; PFAM: AcrB/AcrD/AcrF family
YP_004052657.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cpi:Cpin_1144 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004052658.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR000276; KEGG: dfe:Dfer_3429 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004052659.1	InterPro IPR001647; KEGG: sli:Slin_5507 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004052660.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_5639 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_004052661.1	COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728: IPR010918: IPR017926; KEGG: chu:CHU_1667 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, single chain form
YP_004052662.1	KEGG: sli:Slin_3472 hypothetical protein; SPTR: uncharacterized protein
YP_004052663.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836: IPR000842; KEGG: dfe:Dfer_0421 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004052664.1	InterPro IPR001021: IPR020055; KEGG: aas:Aasi_0482 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25-like; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_004052665.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR000748: IPR002942: IPR006145: IPR018496; KEGG: zpr:ZPR_3830 ribosomal large subunit pseudouridine synthase F; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004052666.1	KEGG: fba:FIC_01718 hypothetical protein; SPTR: uncharacterized protein
YP_004052667.1	COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328: IPR018171; KEGG: phe:Phep_0584 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_004052668.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: gfo:GFO_0807 zinc protease PqqL; PFAM: peptidase M16 domain protein; SPTR: zinc protease; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004052669.1	KEGG: cat:CA2559_09178 hypothetical protein; SPTR: uncharacterized protein
YP_004052670.1	COGs: COG0308 Aminopeptidase N; KEGG: zpr:ZPR_0774 peptidase; SPTR: Peptidase
YP_004052671.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108: IPR006180; KEGG: cat:CA2559_09528 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004052672.1	COGs: COG3530 conserved hypothetical protein; KEGG: chu:CHU_2567 hypothetical protein; SPTR: uncharacterized protein
YP_004052673.1	COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: IS1663 transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase
YP_004052674.1	KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR: uncharacterized protein
YP_004052675.1	KEGG: fps:FP2035 hypothetical protein; SPTR: uncharacterized protein
YP_004052676.1	KEGG: fba:FIC_02369 hypothetical protein; SPTR: uncharacterized protein; PFAM: Transmembrane exosortase (Exosortase_EpsH)
YP_004052677.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR020019: IPR001451; KEGG: bts:Btus_0883 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Acetyltransferase; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_004052678.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR020019: IPR001451: IPR018357; KEGG: chu:CHU_1212 hexapeptide repeat-containing protein acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; SPTR: uncharacterized protein; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_004052679.1	InterPro IPR013766: IPR017936; KEGG: zpr:ZPR_2855 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; PFAM: Thioredoxin
YP_004052680.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: cat:CA2559_03240 Zn-dependent aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: aminopeptidase; PFAM: Peptidase family M1
YP_004052681.1	KEGG: chu:CHU_1553 hypothetical protein; SPTR: uncharacterized protein
YP_004052682.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750: IPR001986; KEGG: chu:CHU_1552 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004052683.1	KEGG: mba:Mbar_A1826 hypothetical protein; SPTR: uncharacterized protein
YP_004052684.1	KEGG: ptm:GSPATT00022867001 hypothetical protein; SPTR: uncharacterized protein
YP_004052685.1	InterPro IPR003961; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004052686.1	COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: sli:Slin_4014 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: uncharacterized protein; PFAM: PIN domain
YP_004052687.1	KEGG: pdi:BDI_3642 hypothetical protein; SPTR: uncharacterized protein
YP_004052688.1	KEGG: cbi:CLJ_B2931 hypothetical protein; SPTR: uncharacterized protein
YP_004052689.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020019: IPR001451: IPR018130; KEGG: cpe:CPE0474 serine O-acetyltransferase; SPTR: uncharacterized protein; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_004052690.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: gwc:GWCH70_3258 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Capsular polysaccharide biosynthesis glycosyltransferase capM; PFAM: Glycosyl transferases group 1
YP_004052691.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pjd:Pjdr2_0359 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004052692.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: amr:AM1_4833 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004052693.1	InterPro IPR000863; KEGG: hch:HCH_03434 hypothetical protein; PFAM: sulfotransferase; SPTR: uncharacterized protein; PFAM: Sulfotransferase domain
YP_004052694.1	KEGG: rxy:Rxyl_2678 hypothetical protein; SPTR: uncharacterized protein; PFAM: O-methyltransferase
YP_004052695.1	KEGG: cyn:Cyan7425_3801 hypothetical protein; SPTR: uncharacterized protein
YP_004052696.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bsu:BSU34340 extracellular matrix biosynthesis enzyme; PFAM: glycosyl transferase group 1; SPTR: transferase; PFAM: Glycosyl transferases group 1
YP_004052697.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cph:Cpha266_0355 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004052698.1	KEGG: rbi:RB2501_06690 hypothetical protein; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Sulfotransferase domain
YP_004052699.1	InterPro IPR001173; KEGG: hwa:HQ3531A hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: WsbD; PFAM: Glycosyl transferase family 2
YP_004052700.1	InterPro IPR001173; KEGG: gfo:GFO_2031 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2
YP_004052701.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376; KEGG: gfo:GFO_2032 hypothetical protein; PFAM: formyl transferase domain protein; SPTR: Formyltransferase family protein; PFAM: Formyl transferase
YP_004052702.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: pfo:Pfl01_4046 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004052703.1	KEGG: ter:Tery_0022 tetratricopeptide TPR_2; SPTR: uncharacterized protein
YP_004052704.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: bfr:BF2582 capsular polysaccharide transporter; PFAM: polysaccharide biosynthesis protein; SPTR: Capsular polysaccharide repeat unit transporter; PFAM: Polysaccharide biosynthesis protein
YP_004052705.1	KEGG: cbl:CLK_2084 hypothetical protein; SPTR: uncharacterized protein
YP_004052706.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: pdi:BDI_1486 alginate O-acetylation protein, alginate O-acetyltransferase; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Alginate O-acetylation protein; PFAM: MBOAT family
YP_004052707.1	KEGG: cbl:CLK_2440 hypothetical protein; SPTR: uncharacterized protein
YP_004052708.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR008089: IPR001509; KEGG: cff:CFF8240_1396 WbnF; PFAM: NAD-dependent epimerase/dehydratase; SPTR: WbnF; PFAM: NAD dependent epimerase/dehydratase family
YP_004052709.1	InterPro IPR007712; KEGG: fps:FP1938 hypothetical protein; PFAM: plasmid stabilization system; SPTR: Hypothetical plasmid-stabilisation protein; PFAM: Plasmid stabilisation system protein
YP_004052710.1	KEGG: fps:FP1939 hypothetical protein; SPTR: uncharacterized protein
YP_004052711.1	KEGG: aco:Amico_1736 transcriptional regulator, PaaX family; SPTR: transcriptional regulator, PaaX family
YP_004052713.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702; KEGG: chu:CHU_0880 tyrosine-protein kinase; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Tyrosine-protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family
YP_004052714.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715: IPR019554; KEGG: gfo:GFO_1984 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: uncharacterized protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain
YP_004052715.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: zpr:ZPR_4711 integrase, catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region; PFAM: Integrase core domain
YP_004052716.1	InterPro IPR002514; KEGG: zpr:ZPR_4701 ISPsy11, transposase OrfA; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_004052717.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: cpi:Cpin_6898 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Phage shock protein E; PFAM: Rhodanese-like domain
YP_004052718.1	KEGG: cpi:Cpin_1193 protein of unknown function DUF540; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF540)
YP_004052719.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: hma:rrnB0219 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004052720.1	KEGG: ana:all1711 hypothetical protein; SPTR: Membrane protein, putative; PFAM: Major Facilitator Superfamily
YP_004052721.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family
YP_004052722.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: dfe:Dfer_5127 amidohydrolase; PFAM: amidohydrolase; SPTR: Secreted enzyme, contains two amidohydrolase related domains; PFAM: Amidohydrolase family
YP_004052723.1	InterPro IPR003018; KEGG: dae:Dtox_3786 GAF sensor hybrid histidine kinase; PFAM: GAF domain protein; SMART: GAF domain protein; SPTR: PAS domain S-box protein
YP_004052724.1	COGs: COG2270 Permease of the major facilitator superfamily; KEGG: sli:Slin_2251 major facilitator superfamily MFS_1; SPTR: uncharacterized protein; PFAM: Vacuole effluxer Atg22 like
YP_004052725.1	InterPro IPR003400; KEGG: zpr:ZPR_4542 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_004052726.1	InterPro IPR003400; KEGG: rmr:Rmar_1719 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_004052727.1	KEGG: bfs:BF3529 hypothetical protein; SPTR: uncharacterized protein
YP_004052728.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: zpr:ZPR_4545 ExbB-like MotA/TolQ/ExbB family biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel family
YP_004052729.1	COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR020827: IPR006034: IPR006033; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I
YP_004052730.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR012278: IPR001130: IPR015991; KEGG: vvu:VV1_0903 Mg-dependent DNase; PFAM: TatD-related deoxyribonuclease; SPTR: Deoxyribonuclease, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_004052731.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004052732.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cat:CA2559_01375 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein; PFAM: Polysaccharide deacetylase
YP_004052733.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: chu:CHU_2179 sigma factor regulation protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: regulatory protein; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004052734.1	InterPro IPR001818; KEGG: rbi:RB2501_15574 predicted extracellular metal-dependent peptidase; PFAM: peptidase M10A and M12B matrixin and adamalysin; SPTR: uncharacterized protein
YP_004052735.1	KEGG: cpc:Cpar_1255 hypothetical protein; SPTR: uncharacterized protein
YP_004052736.1	COGs: COG1742 conserved hypothetical protein; InterPro IPR003844; KEGG: npu:Npun_R3289 hypothetical protein; PFAM: protein of unknown function UPF0060; SPTR: uncharacterized protein; PFAM: Uncharacterised BCR, YnfA/UPF0060 family
YP_004052737.1	KEGG: chu:CHU_0726 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3703)
YP_004052738.1	KEGG: chu:CHU_2181 hypothetical protein; SPTR: uncharacterized protein
YP_004052739.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2238 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_004052740.1	KEGG: dfe:Dfer_2025 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterised protein family (UPF0104)
YP_004052741.1	KEGG: cat:CA2559_12793 hypothetical protein; SPTR: uncharacterized protein; PFAM: BlaR1 peptidase M56
YP_004052742.1	KEGG: psl:Psta_4324 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: uncharacterized protein
YP_004052743.1	KEGG: fjo:Fjoh_2365 membrane protein-like protein; SPTR: uncharacterized protein
YP_004052744.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cte:CT1253 alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: Hydrolase, alpha/beta hydrolase fold family; PFAM: alpha/beta hydrolase fold
YP_004052745.1	KEGG: caa:Caka_0930 hypothetical protein; SPTR: uncharacterized protein
YP_004052746.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cat:CA2559_03665 C-5 cytosine-specific DNA methylase:multi antimicrobial extrusion (MatE) protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: C-5 cytosine-specific DNA methylase:Multi antimicrobial extrusion (MatE) protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004052747.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: phe:Phep_3536 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004052748.1	COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: dfe:Dfer_2646 protein of unknown function DUF218; PFAM: protein of unknown function DUF218; SPTR: uncharacterized protein; PFAM: DUF218 domain
YP_004052749.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: ter:Tery_2249 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase family
YP_004052750.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: chu:CHU_1639 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A
YP_004052751.1	KEGG: rpt:Rpal_1975 hypothetical protein; SPTR: uncharacterized protein
YP_004052752.1	KEGG: rpt:Rpal_1974 hypothetical protein; SPTR: uncharacterized protein
YP_004052753.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR018522: IPR003594: IPR001241: IPR013506; KEGG: chu:CHU_1614 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATPase ATP-binding protein; SMART: DNA topoisomerase II; ATPase ATP-binding protein; SPTR: DNA topoisomerase IV subunit B; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus
YP_004052754.1	KEGG: cpr:CPR_0762 hypothetical protein; SPTR: uncharacterized protein
YP_004052755.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: lic:LIC12336 sterol desaturase-related protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase-related protein; PFAM: Fatty acid hydroxylase superfamily
YP_004052756.1	KEGG: sli:Slin_5550 hypothetical protein; SPTR: Lipoprotein, putative
YP_004052757.1	InterPro IPR000700: IPR003660: IPR003018: IPR000014; KEGG: npu:Npun_R2375 multi-sensor hybrid histidine kinase; PFAM: histidine kinase HAMP region domain protein; SMART: GAF domain protein; histidine kinase HAMP region domain protein; SPTR: Two-component hybrid sensor and regulator, putative; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004052758.1	KEGG: lbf:LBF_2165 hypothetical protein; SPTR: uncharacterized protein
YP_004052759.1	InterPro IPR002716; KEGG: lbf:LBF_2166 PIN domain-containing protein; PFAM: PilT protein domain protein; SPTR: uncharacterized protein; PFAM: PIN domain
YP_004052760.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: aba:Acid345_2396 transglutaminase-like; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_004052761.1	KEGG: mmu:670449 predicted gene 9485; SPTR: uncharacterized protein
YP_004052762.1	KEGG: dtu:Dtur_0300 protein of unknown function DUF112 transmembrane; SPTR: Retrotransposon protein, putative, Ty3-gypsy subclass
YP_004052763.1	COGs: COG0787 Alanine racemase; InterPro IPR020622: IPR001608: IPR011079: IPR000821; KEGG: lbf:LBF_4162 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_004052764.1	KEGG: aeh:Mlg_1476 hypothetical protein; SPTR: uncharacterized protein
YP_004052765.1	KEGG: hha:Hhal_1491 hypothetical protein; SPTR: uncharacterized protein
YP_004052766.1	COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: zpr:ZPR_2270 S10 family carboxypeptidase; PFAM: peptidase S10 serine carboxypeptidase; SPTR: S10 family carboxypeptidase; PFAM: Serine carboxypeptidase
YP_004052767.1	COGs: COG2183 Transcriptional accessory protein; InterPro IPR003029: IPR006641: IPR018974; KEGG: chu:CHU_2338 S1 RNA-binding domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; SPTR: RNA binding protein with S1 RNA-binding domain; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region
YP_004052768.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305: IPR002306; KEGG: cat:CA2559_03505 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_004052769.1	InterPro IPR011637; KEGG: cat:CA2559_01610 hypothetical protein; PFAM: DoxX family protein; SPTR: uncharacterized protein; PFAM: DoxX
YP_004052770.1	InterPro IPR011467; KEGG: chu:CHU_1003 hypothetical protein; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004052771.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: mmr:Mmar10_2681 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase family
YP_004052772.1	COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: kko:Kkor_1406 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: Transporter; PFAM: Sodium:neurotransmitter symporter family
YP_004052773.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: syn:sll1428 P3 protein; PFAM: Bile acid:sodium symporter; SPTR: Sodium bile acid symporter family protein; PFAM: Sodium Bile acid symporter family
YP_004052774.1	InterPro IPR017937: IPR017936: IPR013766; KEGG: brm:Bmur_0806 protein of unknown function DUF255; PFAM: Thioredoxin domain-containing protein; SPTR: uncharacterized protein; PFAM: Thioredoxin
YP_004052775.1	KEGG: nfi:NFIA_078050 hypothetical protein
YP_004052776.1	COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: zpr:ZPR_0052 transcriptional regulator PadR-like protein; PFAM: transcriptional regulator PadR family protein; SPTR: uncharacterized protein; PFAM: Transcriptional regulator PadR-like family
YP_004052777.1	KEGG: sli:Slin_6511 hypothetical protein; SPTR: uncharacterized protein
YP_004052778.1	KEGG: zpr:ZPR_0054 membrane protein; SPTR: uncharacterized protein
YP_004052779.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004052780.1	COGs: COG0302 GTP cyclohydrolase I; InterPro IPR018234: IPR020602: IPR001474; KEGG: dfe:Dfer_0468 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_004052781.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347; KEGG: sli:Slin_1007 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004052782.1	KEGG: mpn:MPN635 hypothetical protein; SPTR: uncharacterized protein
YP_004052783.1	KEGG: ecb:100059813 hypothetical LOC100059813; SPTR: uncharacterized protein PH1895
YP_004052784.1	KEGG: tvo:TVN0807 chromosome segregation ATPase; SPTR: Traf3-interacting jnk-activating modulator, putative
YP_004052785.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107: IPR010200; KEGG: ade:Adeh_3523 HflC protein; PFAM: hypothetical protein; SMART: hypothetical protein; SPTR: HflC protein; TIGRFAM: HflC protein; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein
YP_004052786.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107: IPR010201: IPR001972; KEGG: pca:Pcar_2262 HflK protein; PFAM: hypothetical protein; SMART: hypothetical protein; SPTR: HflK protein; TIGRFAM: HflK protein; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein
YP_004052787.1	COGs: COG2234 aminopeptidase; InterPro IPR003137: IPR007484; KEGG: dfe:Dfer_4110 peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28
YP_004052788.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR016192: IPR002125; KEGG: npu:Npun_R2274 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Cytidine/deoxycytidylate deaminase, zinc-binding region; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004052789.1	KEGG: mho:MHO_2500 hypothetical protein; SPTR: uncharacterized protein
YP_004052790.1	COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR012020: IPR000073; KEGG: sli:Slin_5174 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_004052791.1	KEGG: ddf:DEFDS_1872 hypothetical protein; SPTR: uncharacterized protein
YP_004052792.1	KEGG: chu:CHU_0324 DnaJ-like chaperone; heat shock protein; SPTR: uncharacterized protein
YP_004052793.1	KEGG: sli:Slin_1983 hypothetical protein; SPTR: uncharacterized protein
YP_004052794.1	InterPro IPR000305; KEGG: cpi:Cpin_1593 excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC C subunit domain protein; SPTR: uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_004052795.1	InterPro IPR000305; KEGG: cpi:Cpin_1593 excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC C subunit domain protein; SPTR: uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_004052796.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: pmt:PMT0296 TPR repeat-containing protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: TPR-repeat-containing proteins; PFAM: Tetratricopeptide repeat
YP_004052797.1	KEGG: chu:CHU_3044 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_004052798.1	COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR018357: IPR001451; KEGG: zpr:ZPR_3098 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; SPTR: uncharacterized protein; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_004052799.1	InterPro IPR001296; KEGG: chu:CHU_2023 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_004052800.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367: IPR007167; KEGG: chu:CHU_2024 Mn-dependent transcriptional regulator; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_004052801.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127: IPR006128: IPR006129; KEGG: chu:CHU_2025 Mn/Zn ABC transporter, substrate-binding protein; PFAM: periplasmic solute binding protein; SPTR: Mn/Zn ABC transporter, substrate-binding protein; PFAM: Periplasmic solute binding protein family
YP_004052802.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: chu:CHU_2026 Mn/Zn ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Mn/Zn ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004052803.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001367: IPR001626; KEGG: chu:CHU_2027 Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; SPTR: Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC 3 transport family; Iron dependent repressor, metal binding and dimerisation domain
YP_004052804.1	COGs: COG3241 Azurin; InterPro IPR000923: IPR014068; KEGG: dfe:Dfer_2909 azurin; PFAM: blue (type 1) copper domain protein; SPTR: Azurin; TIGRFAM: azurin; PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: azurin
YP_004052805.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: chu:CHU_2028 Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC-3 protein; SPTR: Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC 3 transport family
YP_004052806.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR017937: IPR017936; KEGG: sli:Slin_4487 thioredoxin-related protein-like protein; SPTR: Thioredoxin-related protein-like protein; PFAM: Protein of unknown function, DUF255
YP_004052807.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155: IPR004792: IPR013027; KEGG: kko:Kkor_1393 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; HI0933 family protein; SPTR: NADH:flavin oxidoreductase, Old Yellow Enzyme family protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family
YP_004052808.1	KEGG: fba:FIC_01849 hypothetical protein; SPTR: uncharacterized protein
YP_004052809.1	COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR018110: IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase
YP_004052810.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: dfe:Dfer_3300 queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_004052811.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: plt:Plut_0101 AefA; PFAM: MscS Mechanosensitive ion channel; SPTR: uncharacterized protein; PFAM: Mechanosensitive ion channel
YP_004052812.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140: IPR006139: IPR002912: IPR006383; KEGG: gfo:GFO_0734 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; SPTR: D-3-phosphoglycerate dehydrogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; D-3-phosphoglycerate dehydrogenase
YP_004052813.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR019734: IPR005467: IPR013026: IPR003661: IPR 003594: IPR001440: IPR004358; KEGG: rbi:RB2501_12999 hypothetical protein; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; hypothetical protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004052814.1	KEGG: zpr:ZPR_4604 membrane protein; SPTR: Membrane protein
YP_004052815.1	InterPro IPR013857; KEGG: gfo:GFO_2305 hypothetical protein; PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; SPTR: UOS1; PFAM: Complex I intermediate-associated protein 30 (CIA30)
YP_004052816.1	KEGG: cpi:Cpin_5121 hypothetical protein; SPTR: uncharacterized protein
YP_004052817.1	KEGG: btb:BMB171_C5065 two-component sensor kinase YycG; SPTR: uncharacterized protein
YP_004052818.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_0028 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004052819.1	InterPro IPR012910; KEGG: dfe:Dfer_4830 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004052820.1	InterPro IPR002110: IPR020683; KEGG: tva:TVAG_291510 ankyrin repeat protein; SPTR: Ankyrin repeat protein, putative; PFAM: Ankyrin repeat
YP_004052821.1	COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR018062: IPR018060: IPR000005: IPR020449; KEGG: rbi:RB2501_11087 transcriptional regulator, AraC family protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: DNA binding protein
YP_004052822.1	KEGG: cel:T07F8.3 defective in Germ Line Development; SPTR: Defective in germ line development protein 3, isoform a
YP_004052823.1	COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterPro IPR017866: IPR013650: IPR005811: IPR005809; KEGG: dfe:Dfer_2736 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA synthetase beta chain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_004052824.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR003439: IPR015854: IPR003593; KEGG: cat:CA2559_08621 lipoprotein releasing system ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Lipoprotein releasing system ATP-binding protein; PFAM: ABC transporter
YP_004052825.1	InterPro IPR019861; KEGG: chu:CHU_1690 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004052826.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterProIPR020610: IPR020613: IPR002155: IPR020616: IPR 020617; KEGG: cpi:Cpin_1205 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase
YP_004052827.1	KEGG: svo:SVI_1446 flagellar biosynthesis protein FlhA; SPTR: Flagellar biosynthesis protein FlhA
YP_004052828.1	COGs: COG0207 Thymidylate synthase; InterPro IPR020940: IPR000398; KEGG: bmd:BMD_4045 thymidylate synthase; PFAM: thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_004052829.1	KEGG: gfo:GFO_0335 secreted protein; SPTR: uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL)
YP_004052830.1	KEGG: gfo:GFO_0336 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2807)
YP_004052831.1	COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: tet:TTHERM_00688570 Alanine racemase, N-terminal domain containing protein; PFAM: alanine racemase domain protein; SPTR: uncharacterized protein; PFAM: Alanine racemase, N-terminal domain
YP_004052832.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR017439: IPR002933: IPR011650: IPR010168; KEGG: zpr:ZPR_1210 hydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Thermostable carboxypeptidase 2; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_004052833.1	COGs: COG3022 conserved hypothetical protein; InterPro IPR005583; KEGG: vcj:VCD_001994 hypothetical protein; PFAM: protein of unknown function DUF328; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF328)
YP_004052834.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cse:Cseg_1199 acyl-ACP thioesterase; PFAM: thioesterase superfamily protein; SPTR: uncharacterized protein; PFAM: Acyl-ACP thioesterase
YP_004052835.1	COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047: IPR006046; KEGG: sli:Slin_0347 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: AmyM; PFAM: Alpha amylase, catalytic domain
YP_004052836.1	KEGG: gfo:GFO_0860 hypothetical protein; SPTR: uncharacterized protein
YP_004052837.1	InterPro IPR002716; KEGG: gfo:GFO_0859 hypothetical protein; PFAM: PilT protein domain protein; SPTR: uncharacterized protein; PFAM: PIN domain
YP_004052838.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR006411; KEGG: dfe:Dfer_2688 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype
YP_004052839.1	KEGG: ptm:GSPATT00032387001 hypothetical protein; SPTR: Haem lyase
YP_004052840.1	InterPro IPR012944; KEGG: srm:SRM_00437 conserved hypothetical protein, outer membrane, containing RagB/SusD domain; PFAM: RagB/SusD domain protein; SPTR: uncharacterized protein; PFAM: SusD family
YP_004052841.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR018247: IPR012910: IPR000531; KEGG: sru:SRU_0358 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004052842.1	COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR006589: IPR004193: IPR006047; KEGG: sli:Slin_0361 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; SPTR: Alpha-amylase; PFAM: Alpha amylase, catalytic domain
YP_004052843.1	InterPro IPR000634; KEGG: bfs:BF3144 lipoprotein; SPTR: uncharacterized protein
YP_004052844.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: pdi:BDI_1557 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family
YP_004052845.1	COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644: IPR001347: IPR004800; KEGG: tcx:Tcr_0503 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SPTR: KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_004052846.1	COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218: IPR006269; KEGG: pru:PRU_0445 3-deoxy-8-phosphooctulonate synthase; PFAM: DAHP synthetase I/KDSA; SPTR: uncharacterized protein; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_004052847.1	COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: hor:Hore_19090 alpha-glucosidase; PFAM: glycoside hydrolase family 31; SPTR: A-glucosidase, glycoside hydrolase family 31 protein; PFAM: Glycosyl hydrolases family 31
YP_004052848.1	COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047; KEGG: zpr:ZPR_2815 alpha amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase; PFAM: Alpha amylase, catalytic domain
YP_004052849.1	COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: cat:CA2559_05075 sugar transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Hypothetical transport protein; PFAM: Major Facilitator Superfamily
YP_004052850.1	InterPro IPR001590: IPR003961: IPR002884; KEGG: hau:Haur_0966 hypothetical protein; PFAM: Proprotein convertase P; Fibronectin type III domain protein; SPTR: uncharacterized protein; PFAM: Developmentally Regulated MAPK Interacting Protein; Proprotein convertase P-domain
YP_004052851.1	COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: sli:Slin_2720 20S proteasome A and B subunits; PFAM: 20S proteasome A and B subunits; SPTR: ATP-dependent protease HslV; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit
YP_004052853.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR003016: IPR000089: IPR004167: IPR001078: IPR 006257; KEGG: chu:CHU_1755 dihydrolipoyllysine-residue acetyltransferase (dihydrolipoamide S-acetyltransferase); PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_004052854.1	InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)
YP_004052855.1	InterPro IPR002610; KEGG: zpr:ZPR_3887 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004052856.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: gfo:GFO_3101 histone deacetylase family protein; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase superfamily; PFAM: Histone deacetylase domain
YP_004052857.1	KEGG: sli:Slin_2427 hypothetical protein; SPTR: uncharacterized protein
YP_004052858.1	COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: cpi:Cpin_0809 membrane protein of unknown function; PFAM: membrane protein of unknown function; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function
YP_004052859.1	KEGG: fjo:Fjoh_2807 hypothetical protein; SPTR: uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain
YP_004052860.1	KEGG: cat:CA2559_12608 hypothetical protein; SPTR: uncharacterized protein
YP_004052861.1	KEGG: cpi:Cpin_1324 hypothetical protein; SPTR: uncharacterized protein
YP_004052862.1	KEGG: bhy:BHWA1_01485 hypothetical protein; SPTR: uncharacterized protein
YP_004052863.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747: IPR004655; KEGG: fps:FP1501 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH2; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004052864.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: fjo:Fjoh_1678 carbonic anhydrase; PFAM: transferase hexapeptide repeat containing protein; SPTR: Acetyltransferase/carbonic anhydrase
YP_004052865.1	InterPro IPR007372; KEGG: cpi:Cpin_1135 YceI family protein; PFAM: YceI family protein; SPTR: YCE I like family protein; PFAM: YceI-like domain
YP_004052866.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890: IPR019999; KEGG: sli:Slin_3444 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; SPTR: p-aminobenzoate synthetase, component I; PFAM: chorismate binding enzyme
YP_004052867.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR020612: IPR002792: IPR013848: IPR006638: IPR 007197: IPR005839: IPR006463; KEGG: aas:Aasi_0614 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: TRNA-i(6)A37 thiotransferase enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_004052868.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR003593: IPR002197: IPR020441; KEGG: chu:CHU_1822 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004052869.1	KEGG: sli:Slin_0989 hypothetical protein; SPTR: uncharacterized protein
YP_004052870.1	KEGG: sli:Slin_0988 hypothetical protein; SPTR: uncharacterized protein
YP_004052871.1	InterPro IPR004692; KEGG: dfe:Dfer_2731 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: uncharacterized protein; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_004052872.1	KEGG: pyo:PY07424 hypothetical protein; SPTR: Predicted protein
YP_004052873.1	KEGG: amc:MADE_03268 hypothetical protein; SPTR: TonB-dependent receptor
YP_004052874.1	COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: chu:CHU_2672 hypothetical protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_004052875.1	COGs: COG1109 Phosphomannomutase; InterProIPR016066: IPR005844: IPR005845: IPR005846: IPR 005841; KEGG: chu:CHU_0998 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; SPTR: Phosphomannomutase, putative; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004052876.1	COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR005956: IPR004360; KEGG: cpi:Cpin_5420 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase
YP_004052877.1	KEGG: chu:CHU_0999 hypothetical protein; SPTR: uncharacterized protein
YP_004052878.1	COGs: COG3808 Inorganic pyrophosphatase; InterPro IPR004131; KEGG: sli:Slin_0746 V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic H+ pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase
YP_004052879.1	InterPro IPR003660; KEGG: ava:Ava_4696 GAF sensor hybrid histidine kinase; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; SPTR: GAF Sensor Hybrid Histidine Kinase, putative; PFAM: HAMP domain; TIGRFAM: PAS domain S-box
YP_004052880.1	COGs: COG1793 ATP-dependent DNA ligase; InterPro IPR016059: IPR012310: IPR012309; KEGG: cpi:Cpin_6857 ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; SPTR: ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase I, ATP-dependent (dnl1)
YP_004052881.1	COGs: COG1201 Lhr-like helicase; InterProIPR014021: IPR001650: IPR014001: IPR017170: IPR 011545: IPR013701; KEGG: gfo:GFO_3528 DEAD box helicase family protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD box helicase family protein; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase
YP_004052882.1	InterPro IPR019223; KEGG: cts:Ctha_2007 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2147)
YP_004052883.1	COGs: COG1407 ICC-like phosphoesterase; InterPro IPR004843; KEGG: chu:CHU_3526 ICC-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, SbcD/Mre11-related
YP_004052884.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: chu:CHU_0953 RNA polymerase, sigma-E factor; heat shock and oxidative stress; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: DNA-directed RNA polymerase specialized sigma subunit, putative; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004052885.1	KEGG: chu:CHU_0952 hypothetical protein; SPTR: uncharacterized protein
YP_004052886.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: aas:Aasi_0390 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Cell division protein FtsX; PFAM: Predicted permease
YP_004052887.1	KEGG: gfo:GFO_2759 secreted protein
YP_004052888.1	KEGG: dfe:Dfer_1244 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3098)
YP_004052889.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR010916: IPR003824; KEGG: cat:CA2559_04545 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenol kinase, subfamily; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_004052890.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR002501: IPR014780; KEGG: gfo:GFO_3038 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_004052891.1	COGs: COG0196 FAD synthase; InterPro IPR002606: IPR015864: IPR015865; KEGG: sli:Slin_0790 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_004052892.1	COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004163: IPR004165: IPR012792; KEGG: fba:FIC_00873 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit
YP_004052893.1	COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004164: IPR004165: IPR012791; KEGG: gfo:GFO_3238 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit
YP_004052894.1	COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: cts:Ctha_0444 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: Peptidase, M48 family; PFAM: Peptidase family M48
YP_004052895.1	InterPro IPR019854; KEGG: sli:Slin_1361 gliding motility-associated protein GldC; SPTR: uncharacterized protein; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC
YP_004052896.1	InterPro IPR012544; KEGG: cpi:Cpin_2100 protein of unknown function DUF1696; PFAM: protein of unknown function DUF1696; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1696)
YP_004052897.1	KEGG: bth:BT_3234 hypothetical protein; SPTR: uncharacterized protein
YP_004052898.1	COGs: COG4222 conserved hypothetical protein; KEGG: cpi:Cpin_0631 hypothetical protein; SPTR: uncharacterized protein
YP_004052899.1	COGs: COG1278 Cold shock protein; InterPro IPR011129: IPR012156: IPR002059; KEGG: chu:CHU_2346 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: 'cold-shock' DNA-binding protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004052900.1	COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: fjo:Fjoh_2552 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine-R-sulfoxide reductase, MsrB protein (PilB protein); TIGRFAM: methionine-R-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_004052901.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: mvn:Mevan_0283 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004052902.1	KEGG: sli:Slin_5875 hypothetical protein; SPTR: uncharacterized protein
YP_004052903.1	COGs: COG0321 Lipoate-protein ligase B; InterPro IPR020605: IPR004143: IPR000544; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B
YP_004052904.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR019490: IPR011857; KEGG: csc:Csac_1187 bifunctional phosphoglucose/phosphomannose isomerase; PFAM: Bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase-like; SPTR: Bifunctional phosphoglucose/phosphomannose isomerase; TIGRFAM: bifunctional phosphoglucose/phosphomannose isomerase; PFAM: Bacterial phospho-glucose isomerase C-terminal region; TIGRFAM: bifunctional phosphoglucose/phosphomannose isomerase
YP_004052905.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: sli:Slin_5877 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein M23134_07546; PFAM: Uncharacterised protein family UPF0102
YP_004052906.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2622 glycosyl transferase family 9; PFAM: glycosyl transferase family 9; SPTR: Glycosyl transferase family 9; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_004052907.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR002054: IPR003141: IPR004013; KEGG: phe:Phep_3075 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; DNA polymerase X; SPTR: PHP domain protein; manually curated; PFAM: PHP domain
YP_004052908.1	KEGG: dfe:Dfer_2677 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004052909.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: sli:Slin_3159 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain
YP_004052910.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR006130: IPR006132: IPR006131: IPR002082; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_004052911.1	KEGG: zpr:ZPR_2253 hypothetical protein; SPTR: uncharacterized protein
YP_004052912.1	KEGG: pfa:PF14_0419 conserved Plasmodium protein, unknown function; SPTR: Ketol-acid reductoisomerase
YP_004052913.1	COGs: COG0031 Cysteine synthase; InterPro IPR001216: IPR000644: IPR001926; KEGG: sli:Slin_5829 cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Cysteine synthase; PFAM: CBS domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cystathionine beta-synthase
YP_004052914.1	KEGG: chu:CHU_2804 hypothetical protein; SPTR: uncharacterized protein
YP_004052915.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280: IPR002792: IPR001566; KEGG: bfs:BF2568 RNA methyltransferase; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; SPTR: RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_004052916.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR011659: IPR006664; KEGG: chu:CHU_2993 outer membrane protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Possible outer membrane protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052917.1	COGs: COG0466 ATP-dependent Lon protease; InterProIPR008268: IPR003111: IPR003593: IPR003959: IPR 004815: IPR001984; KEGG: sli:Slin_5918 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_004052918.1	KEGG: chu:CHU_2991 hypothetical protein; SPTR: uncharacterized protein
YP_004052919.1	COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR003593: IPR013093: IPR019489: IPR004491; KEGG: sli:Slin_1628 heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent protease HslVU, ATPase subunit
YP_004052920.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347; KEGG: chu:CHU_2989 short-chain alcohol dehydrogenase/reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; PFAM: short chain dehydrogenase
YP_004052921.1	InterPro IPR000601: IPR005046: IPR011889; KEGG: srm:PSR_61030 conserved hypothetical protein containing fibronectin, type III domain; PFAM: protein of unknown function DUF285 lipoprotein; SPTR: Transmembrane protein, putative; TIGRFAM: lipoprotein; PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat
YP_004052922.1	KEGG: chu:CHU_3341 hypothetical protein; SPTR: uncharacterized protein
YP_004052923.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016; KEGG: chu:CHU_3510 superfamily I DNA/RNA helicase; SPTR: Superfamily I DNA and RNA helicase; PFAM: UvrD/REP helicase
YP_004052924.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR011659: IPR006664; KEGG: chu:CHU_1585 OmpA family outer membrane protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein, OmpA family; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004052925.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: oan:Oant_3093 beta-lactamase; PFAM: beta-lactamase; SPTR: Amide hydrolase; PFAM: Beta-lactamase
YP_004052926.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020625: IPR002220: IPR005263; KEGG: dfe:Dfer_5112 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_004052927.1	KEGG: aas:Aasi_1370 hypothetical protein; SPTR: uncharacterized protein
YP_004052928.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR018239: IPR001357: IPR013840: IPR001679: IPR 013839: IPR004150: IPR004149; KEGG: chu:CHU_1313 DNA ligase; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase; BRCT domain protein; SPTR: DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent
YP_004052929.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: sli:Slin_6185 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Dipeptidyl peptidase IV (DPP IV) N-terminal region domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_004052930.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR015377: IPR002529: IPR005959; KEGG: gfo:GFO_2263 fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: fumarylacetoacetase
YP_004052931.1	COGs: COG0525 Valyl-tRNA synthetase; InterProIPR001412: IPR002300: IPR013155: IPR019499: IPR 002303: IPR019754; KEGG: phe:Phep_1244 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_004052932.1	KEGG: nvi:100121075 similar to 4-nitrophenylphosphatase; SPTR: Exodeoxyribonuclease VII, large subunit
YP_004052933.1	COGs: COG3696 silver efflux pump; InterPro IPR001036: IPR003423: IPR004763; KEGG: pdi:BDI_0802 transport-related, membrane protein; PFAM: acriflavin resistance protein; outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004052934.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0162 cation efflux system protein; SPTR: Cation efflux system protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004052935.1	COGs: COG3129 SAM-dependent methyltransferase; InterPro IPR016909: IPR010286; KEGG: ant:Arnit_1537 rRNA (adenine-N(6)-)-methyltransferase; PFAM: protein of unknown function DUF890; PRIAM: rRNA (adenine-N(6)-)-methyltransferase; SPTR: Ribosomal RNA large subunit methyltransferase F; PFAM: Protein of unknown function (DUF890)
YP_004052936.1	InterPro IPR000182; KEGG: bay:RBAM_031150 YvbK; PFAM: GCN5-related N-acetyltransferase; SPTR: IAA acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004052937.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158: IPR005129: IPR006099: IPR006159; KEGG: fjo:Fjoh_2332 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: B12 binding domain/ArgK/methylmalonyl-CoA mutase family protein; PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_004052938.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593; KEGG: fps:FP0007 helicase; SMART: ATPase AAA; SPTR: Helicase, putative; PFAM: PIF1 helicase
YP_004052939.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR008144: IPR002627: IPR018022; KEGG: chu:CHU_2776 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; manually curated; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_004052940.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467: IPR001789: IPR000014: IPR000700: IPR 008207: IPR001610: IPR003661: IPR003594: IPR013767: IPR004358; KEGG: chu:CHU_2784 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATPase ATP-binding protein; histidine kinase A domain protein; PAS fold domain protein; Hpt domain protein; SMART: response regulator receiver; ATPase ATP-binding protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box
YP_004052941.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: chu:CHU_2785 sensor for ctr capsule biosynthesis, histidine kinase acting on RcsB; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB; PFAM: Response regulator receiver domain
YP_004052942.1	KEGG: chu:CHU_2786 hypothetical protein; SPTR: uncharacterized protein
YP_004052943.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: chu:CHU_2787 metal-dependent hydrolase; SPTR: Metal-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily
YP_004052944.1	COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616: IPR008532; KEGG: dfe:Dfer_2016 protein of unknown function DUF814; PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA)
YP_004052945.1	KEGG: pha:PSHAa2180 TonB-dependent receptor; SPTR: TonB-dependent receptor
YP_004052946.1	KEGG: bhy:BHWA1_01120 hypothetical protein; SPTR: CheA Signal Transduction Histidine Kinases (STHK)
YP_004052947.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016: IPR014017: IPR000212; KEGG: sli:Slin_5601 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase
YP_004052948.1	KEGG: fps:FP1141 hypothetical protein; SPTR: Lipoprotein, putative
YP_004052949.1	KEGG: hau:Haur_3199 hypothetical protein; SPTR: uncharacterized protein
YP_004052950.1	KEGG: ant:Arnit_0896 plasmid stabilization system; SPTR: uncharacterized protein; PFAM: Plasmid stabilisation system protein
YP_004052951.1	KEGG: phe:Phep_1819 hypothetical protein; SPTR: uncharacterized protein
YP_004052952.1	KEGG: aeh:Mlg_1165 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2721)
YP_004052953.1	COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076: IPR000172; KEGG: phe:Phep_3645 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase
YP_004052954.1	KEGG: sli:Slin_5805 hypothetical protein; SPTR: uncharacterized protein
YP_004052955.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: rmr:Rmar_1734 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_004052956.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: phe:Phep_2327 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004052957.1	COGs: COG0225 Peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: rbi:RB2501_11597 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_004052958.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660: IPR006659; KEGG: app:CAP2UW1_4244 arsenate reductase; PFAM: arsenate reductase and related; SPTR: Arsenate reductase; TIGRFAM: arsenate reductase; PFAM: ArsC family; TIGRFAM: arsenate reductase (glutaredoxin)
YP_004052959.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104: IPR011932; KEGG: chu:CHU_2702 site-specific recombinase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Site-specific recombinase; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD
YP_004052960.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR018509: IPR001874; KEGG: cpi:Cpin_2345 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_004052961.1	COGs: COG1803 Methylglyoxal synthase; InterPro IPR018148: IPR004363: IPR011607; KEGG: zpr:ZPR_2750 methylglyoxal synthase; PFAM: MGS domain protein; PRIAM: Methylglyoxal synthase; SPTR: uncharacterized protein; TIGRFAM: methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase
YP_004052962.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: shn:Shewana3_3523 ferredoxin-dependent glutamate synthase; PFAM: ferredoxin-dependent glutamate synthase; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase family protein; PFAM: Conserved region in glutamate synthase
YP_004052963.1	InterPro IPR011110: IPR011123; KEGG: rmr:Rmar_1703 histidine kinase; PFAM: Two component regulator three Y domain-containing protein; Two component regulator propeller; SPTR: Histidine kinase; PFAM: Y_Y_Y domain
YP_004052964.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: fjo:Fjoh_4464 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase
YP_004052965.1	COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: sli:Slin_5663 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_004052966.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR017871: IPR003439: IPR003593; KEGG: sli:Slin_0799 ABC transporter related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_004052967.1	KEGG: nmr:Nmar_0503 hypothetical protein; SPTR: uncharacterized protein
YP_004052968.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: gfo:GFO_2340 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase family
YP_004052969.1	KEGG: cpi:Cpin_2333 hypothetical protein; SPTR: uncharacterized protein
YP_004052970.1	COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818: IPR001476; KEGG: aas:Aasi_0309 hypothetical protein; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_004052971.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR018370: IPR002423: IPR001844; KEGG: aas:Aasi_0308 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_004052972.1	KEGG: pfd:PFDG_03752 hypothetical protein; SPTR: uncharacterized protein; PFAM: Tellurite resistance protein TerB
YP_004052973.1	COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254: IPR005744; KEGG: smt:Smal_3054 channel protein, hemolysin III family; PFAM: Hly-III family protein; SPTR: Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_004052974.1	KEGG: chu:CHU_0962 cold-shock DNA-binding protein family protein; SPTR: uncharacterized protein
YP_004052975.1	COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: csc:Csac_0667 PhzF family phenazine biosynthesis protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family
YP_004052976.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151; KEGG: sli:Slin_1888 peptidase S41; PFAM: peptidase S41; SPTR: uncharacterized protein; PFAM: Peptidase family S41
YP_004052977.1	InterPro IPR018530; KEGG: lic:LIC12326 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004052978.1	KEGG: chu:CHU_1022 hypothetical protein; SPTR: uncharacterized protein
YP_004052979.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000595: IPR011110: IPR010822; KEGG: lic:LIC12324 serine/threonine kinase protein; PFAM: Stage II sporulation protein E; Two component regulator propeller; SPTR: Serine/threonine protein kinases, putative; PFAM: Two component regulator propeller; Stage II sporulation protein E (SpoIIE)
YP_004052980.1	KEGG: chu:CHU_1023 hypothetical protein; SPTR: uncharacterized protein
YP_004052981.1	InterPro IPR019775: IPR019782: IPR017986: IPR001680; KEGG: chu:CHU_1024 hypothetical protein; SPTR: Peptidase C14, caspase catalytic subunit p20, putative; PFAM: WD domain, G-beta repeat
YP_004052982.1	KEGG: chu:CHU_1025 hypothetical protein; SPTR: uncharacterized protein
YP_004052983.1	KEGG: pfd:PFDG_02858 hypothetical protein; SPTR: tRNA modification GTPase mnmE
YP_004052984.1	InterPro IPR000601: IPR001434; KEGG: chu:CHU_1906 CHU large protein, SAP or adhesin AidA-related; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: CHU large protein, possible SAP or adhesin AidA-related; TIGRFAM: conserved repeat domain protein
YP_004052985.1	COGs: COG0372 Citrate synthase; InterPro IPR019810: IPR002020: IPR010953; KEGG: dfe:Dfer_0554 citrate synthase I; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate (Si)-synthase, eukaryotic; citrate synthase I (hexameric type)
YP_004052986.1	COGs: COG4281 Acyl-CoA-binding protein; InterPro IPR000582; KEGG: cpi:Cpin_4032 acyl-coA-binding protein ACBP; PFAM: acyl-coA-binding protein ACBP; SPTR: Acyl-CoA binding protein; PFAM: Acyl CoA binding protein
YP_004052987.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: phe:Phep_0869 aminotransferase class-III; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine aminotransferase; PFAM: Aminotransferase class-III
YP_004052988.1	KEGG: pti:PHATRDRAFT_44792 hypothetical protein; SPTR: uncharacterized protein
YP_004052989.1	InterPro IPR017937: IPR017936: IPR013740; KEGG: cat:CA2559_11808 thioredoxin, putative; PFAM: Redoxin domain protein; SPTR: Thiol-disulfide oxidoreductase; PFAM: AhpC/TSA family
YP_004052990.1	InterPro IPR002092: IPR005804; KEGG: lpa:lpa_04391 alkane 1-monooxygenase; PFAM: fatty acid desaturase; PRIAM: Alkane 1-monooxygenase; SPTR: Alkane 1-monooxygenase; PFAM: Fatty acid desaturase
YP_004052991.1	InterPro IPR011701; KEGG: cpi:Cpin_0923 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_004052992.1	KEGG: sli:Slin_6388 hypothetical protein; SPTR: uncharacterized protein; PFAM: PspC domain
YP_004052993.1	InterPro IPR019734: IPR013026; KEGG: chu:CHU_2679 outer membrane lipoprotein P61; SPTR: Probable outer membrane lipoprotein P61
YP_004052994.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR013838: IPR005475: IPR005476; KEGG: sli:Slin_5165 transketolase central region; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: Transketolase central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004052995.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000838: IPR007627: IPR013249: IPR014284; KEGG: dfe:Dfer_3544 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004052996.1	KEGG: dfe:Dfer_3545 hypothetical protein; SPTR: uncharacterized protein
YP_004052997.1	KEGG: gfo:GFO_1857 hypothetical protein; SPTR: uncharacterized protein
YP_004052998.1	InterPro IPR011467; KEGG: sli:Slin_6328 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004052999.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V); PFAM: Uncharacterized conserved protein (DUF2075)
YP_004053000.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: pdi:BDI_1501 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_004053001.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086: IPR020476; KEGG: chu:CHU_2664 NUDIX hydrolase family protein; PFAM: NUDIX hydrolase; SPTR: NTP pyrophosphohydrolase including oxidative damage repair enzyme; PFAM: NUDIX domain
YP_004053002.1	KEGG: gfo:GFO_1825 hypothetical protein; SPTR: uncharacterized protein
YP_004053003.1	KEGG: chu:CHU_2666 hypothetical protein; SPTR: uncharacterized protein
YP_004053004.1	COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR004820: IPR004821: IPR001980; KEGG: dfe:Dfer_0236 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_004053005.1	KEGG: brm:Bmur_1557 hypothetical protein; SPTR: uncharacterized protein
YP_004053006.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: gfo:GFO_2517 hydroxymethylglutaryl-CoA lyase-like protein; PFAM: pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase like protein; PFAM: HMGL-like
YP_004053007.1	InterPro IPR002797; KEGG: chu:CHU_2768 membrane export protein; PFAM: polysaccharide biosynthesis protein; SPTR: uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_004053008.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tsi:TSIB_2051 pyridoxal phosphate-dependent protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004053009.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR015912: IPR012003: IPR000023: IPR012828; KEGG: dfe:Dfer_3102 6-phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_004053010.1	InterPro IPR018247: IPR014982; KEGG: fjo:Fjoh_1897 hypothetical protein; PFAM: GSCFA domain protein; SPTR: Lipoprotein, putative; PFAM: GSCFA family
YP_004053011.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: chu:CHU_2595 hypothetical protein; SPTR: Thymidylate kinase; PFAM: Glycosyl Hydrolase Family 88; Protein of unknown function, DUF255
YP_004053012.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterProIPR014021: IPR001650: IPR014001: IPR011545: IPR 005259; KEGG: dfe:Dfer_3377 primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_004053013.1	KEGG: phe:Phep_3739 hypothetical protein; SPTR: uncharacterized protein
YP_004053014.1	InterPro IPR008619; KEGG: cpi:Cpin_4916 hypothetical protein; PFAM: Haemagluttinin repeat-containing protein; SPTR: uncharacterized protein
YP_004053015.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845: IPR000873; KEGG: dfe:Dfer_3249 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme
YP_004053016.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR010231; KEGG: chu:CHU_0978 cysteine desulfurase activator complex subunit SufB; PFAM: SufBD protein; SPTR: uncharacterized protein; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_004053017.1	KEGG: acr:Acry_3409 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: uncharacterized protein
YP_004053018.1	COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439: IPR003593: IPR010230; KEGG: chu:CHU_0977 iron-regulated ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ATP-dependent transporter Ycf16; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_004053019.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR011542; KEGG: sli:Slin_0174 FeS assembly protein SufD; PFAM: SufBD protein; SPTR: FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1
YP_004053020.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR020578: IPR000192: IPR010970; KEGG: sli:Slin_0166 cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily
YP_004053021.1	COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: aas:Aasi_0997 hypothetical protein; PFAM: Fe-S metabolism associated SufE; SPTR: uncharacterized protein; PFAM: Fe-S metabolism associated domain
YP_004053022.1	COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744: IPR014291; KEGG: sli:Slin_0162 FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; SPTR: uncharacterized protein; TIGRFAM: FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein
YP_004053023.1	InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: protein of unknown function DUF1094; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1094)
YP_004053024.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: gfo:GFO_2240 glutamyl-tRNA(Gln) amidotransferase subunit A; PFAM: Amidase; SPTR: Amidase; PFAM: Amidase
YP_004053025.1	KEGG: coc:Coch_0160 YD repeat protein; SPTR: uncharacterized protein
YP_004053026.1	KEGG: ilo:IL2410 hypothetical protein; SPTR: uncharacterized protein
YP_004053027.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR014014: IPR014001: IPR 000629: IPR011545: IPR005580; KEGG: phe:Phep_0666 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_004053028.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR017909: IPR000683: IPR006311; KEGG: zpr:ZPR_4657 dehydrogenase; PFAM: oxidoreductase domain protein; SPTR: dehydrogenase; manually curated; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_004053029.1	InterPro IPR010496; KEGG: zpr:ZPR_4658 hypothetical protein; PFAM: protein of unknown function DUF1080; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_004053030.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR006311; KEGG: sli:Slin_1892 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel
YP_004053031.1	COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: cha:CHAB381_1381 large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_004053032.1	KEGG: rmr:Rmar_0373 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_004053033.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016192: IPR016473: IPR002125; KEGG: chu:CHU_2215 cytidine/deoxycytidylate deaminase (dCMP deaminase); PFAM: CMP/dCMP deaminase zinc-binding; SPTR: DCMP deaminase, putative; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004053034.1	KEGG: fjo:Fjoh_1606 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004053035.1	KEGG: cal:CaO19.813 low complexity orf; SPTR: Lipoprotein, putative
YP_004053036.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR016166: IPR006094: IPR011601: IPR003170; KEGG: gfo:GFO_2930 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004053037.1	InterPro IPR003761; KEGG: ppd:Ppro_0179 hypothetical protein; PFAM: Exonuclease VII small subunit; SPTR: Exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII small subunit
YP_004053038.1	COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: chu:CHU_0932 stationary phase survival protein SurE; PFAM: Survival protein SurE; SPTR: 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_004053039.1	KEGG: sli:Slin_6372 hypothetical protein; SPTR: uncharacterized protein
YP_004053040.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR016299: IPR000422: IPR000926; KEGG: chu:CHU_0931 bifunctional protein: GTP cyclohydrolase II; 3,4 dihydroxy-2-butanone-4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: riboflavin biosynthesis protein; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_004053041.1	COGs: COG0358 DNA primase; InterProIPR002694: IPR006154: IPR013264: IPR006171: IPR 006295; KEGG: aas:Aasi_0912 hypothetical protein; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; SPTR: DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core
YP_004053042.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808: IPR002744: IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: uncharacterized protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ
YP_004053043.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: NifU family protein; PFAM: NifU-like domain
YP_004053044.1	KEGG: cat:CA2559_01750 hypothetical protein; SPTR: uncharacterized protein; PFAM: Pregnancy-associated plasma protein-A
YP_004053045.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR011761: IPR000291: IPR011127: IPR011095: IPR 005905; KEGG: chu:CHU_0924 D-alanine--D-alanine ligase A; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase A; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_004053046.1	COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: dfe:Dfer_2925 PASTA domain containing protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: PASTA domain containing protein; PFAM: PASTA domain
YP_004053047.1	KEGG: dfe:Dfer_2924 hypothetical protein; SPTR: uncharacterized protein
YP_004053048.1	KEGG: sli:Slin_5751 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_004053049.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786: IPR001544; KEGG: sli:Slin_1098 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain-amino-acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_004053050.1	COGs: COG2096 conserved hypothetical protein; InterPro IPR002779: IPR017858; KEGG: sli:Slin_1099 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP:cob(I)alamin adenosyltransferase, putative; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_004053051.1	KEGG: caa:Caka_0294 hypothetical protein; SPTR: uncharacterized protein
YP_004053052.1	KEGG: mma:MM_0423 hypothetical protein; SPTR: Conserved protein
YP_004053053.1	KEGG: mch:Mchl_1979 animal heme peroxidase; SPTR: uncharacterized protein
YP_004053054.1	KEGG: lpa:lpa_03779 SidF; SPTR: uncharacterized protein
YP_004053055.1	KEGG: mch:Mchl_1979 animal heme peroxidase; SPTR: uncharacterized protein SCF11.30
YP_004053056.1	InterPro IPR001261; KEGG: fps:FP0254 hypothetical protein; SPTR: uncharacterized protein
YP_004053057.1	KEGG: sli:Slin_2330 hypothetical protein; SPTR: uncharacterized protein
YP_004053058.1	KEGG: fba:FIC_00030 hypothetical protein; SPTR: uncharacterized protein
YP_004053059.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sil:SPO3848 sterol desaturase family protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase family protein; PFAM: Fatty acid hydroxylase superfamily
YP_004053060.1	COGs: COG3564 conserved hypothetical protein; InterPro IPR008497; KEGG: nwa:Nwat_3004 hypothetical protein; PFAM: protein of unknown function DUF779; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF779)
YP_004053061.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160: IPR015590; KEGG: dfe:Dfer_0072 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde dehydrogenase (NAD+); PFAM: Aldehyde dehydrogenase family
YP_004053062.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR018062: IPR000005; KEGG: dfe:Dfer_0071 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC-type DNA-binding domain-containing protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-type transcriptional regulator N-terminus
YP_004053063.1	COGs: COG2066 Glutaminase; InterPro IPR015868; KEGG: cat:CA2559_09673 glutaminase; PFAM: Glutaminase, core; PRIAM: Glutaminase; SPTR: Glutaminase; TIGRFAM: Glutaminase, core; PFAM: Glutaminase; TIGRFAM: glutaminase A
YP_004053064.1	InterPro IPR000792: IPR011701; KEGG: rbi:RB2501_12804 permease of the major facilitator superfamily protein; PFAM: major facilitator superfamily MFS_1; SPTR: Permease of the major facilitator superfamily protein; PFAM: Major Facilitator Superfamily
YP_004053065.1	KEGG: dfe:Dfer_1053 hypothetical protein; SPTR: uncharacterized protein
YP_004053066.1	InterPro IPR018247; KEGG: srm:SRM_02658 hypothetical protein; SPTR: Beta-Ig-H3/fasciclin
YP_004053067.1	KEGG: sli:Slin_3490 hypothetical protein; SPTR: Lipoprotein, putative
YP_004053068.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR009056: IPR004852; KEGG: dfe:Dfer_5340 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Methylamine utilization protein MauG; manually curated; PFAM: Di-haem cytochrome c peroxidase
YP_004053069.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865: IPR000994; KEGG: gfo:GFO_0851 secreted Xaa-Pro aminopeptidase; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; SPTR: Secreted Xaa-Pro aminopeptidase; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24
YP_004053070.1	KEGG: bpo:BP951000_2174 hypothetical protein; SPTR: uncharacterized protein
YP_004053071.1	InterPro IPR003111; KEGG: sli:Slin_5613 peptidase S16 lon domain protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; SPTR: ATP-dependent Lon protease, putative; PFAM: ATP-dependent protease La (LON) domain
YP_004053072.1	InterPro IPR003961; KEGG: rmr:Rmar_0976 hypothetical protein; SPTR: uncharacterized protein
YP_004053073.1	COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: cat:CA2559_03420 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2132)
YP_004053074.1	COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR001557: IPR001236: IPR011275; KEGG: zpr:ZPR_3792 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_004053075.1	InterPro IPR000595; KEGG: rmr:Rmar_2556 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004053076.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063: IPR012795: IPR012796; KEGG: aas:Aasi_1198 hypothetical protein; PFAM: PP-loop domain protein; SPTR: tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_004053077.1	KEGG: aas:Aasi_1197 hypothetical protein; SPTR: uncharacterized protein; PFAM: OstA-like protein
YP_004053078.1	KEGG: dfe:Dfer_5215 hypothetical protein; SPTR: uncharacterized protein
YP_004053079.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: sli:Slin_1307 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_004053080.1	InterPro IPR006110: IPR003716; KEGG: sli:Slin_1306 hypothetical protein; PFAM: RNA polymerase Rpb6; SPTR: uncharacterized protein; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_004053081.1	KEGG: chu:CHU_3014 hypothetical protein; SPTR: uncharacterized protein
YP_004053082.1	InterPro IPR008266; KEGG: zpr:ZPR_0495 acyl-protein synthetase, LuxE; SPTR: Possible acyl protein synthase/acyl-CoA reductase-like protein; PFAM: Acyl-protein synthetase, LuxE
YP_004053083.1	KEGG: sli:Slin_4429 hypothetical protein; SPTR: Lipoprotein, putative
YP_004053084.1	COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: ppd:Ppro_3278 peptidase M48, Ste24p; PFAM: peptidase M48 Ste24p; SPTR: Peptidase M48, Ste24p; PFAM: Peptidase family M48
YP_004053085.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: sli:Slin_0979 fumarylacetoacetate (FAA) hydrolase; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_004053086.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dfe:Dfer_2938 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23
YP_004053087.1	COGs: COG1225 Peroxiredoxin; InterPro IPR017936: IPR000866; KEGG: chu:CHU_1893 bacterioferritin comigratory protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PRIAM: Peroxiredoxin; SPTR: bacterioferritin co-migratory protein; PFAM: AhpC/TSA family
YP_004053088.1	COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: phe:Phep_0874 transketolase domain protein; PFAM: Transketolase domain-containing protein; SPTR: Transketolase subunit A; PFAM: Transketolase, thiamine diphosphate binding domain
YP_004053089.1	InterPro IPR002035; KEGG: rrs:RoseRS_1396 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain
YP_004053090.1	COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475: IPR005476; KEGG: phe:Phep_0873 transketolase central region; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: Transketolase, C-terminal subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004053091.1	COGs: COG1359 conserved hypothetical protein; InterPro IPR007138; KEGG: sli:Slin_4551 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase domain protein; PFAM: Antibiotic biosynthesis monooxygenase
YP_004053092.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dfe:Dfer_5075 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004053093.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: gfo:GFO_3372 hypothetical protein; SPTR: Alpha/beta hydrolase; PFAM: Prolyl oligopeptidase family
YP_004053094.1	KEGG: sto:ST0652 hypothetical protein; SPTR: uncharacterized protein
YP_004053095.1	KEGG: dma:DMR_38040 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_004053096.1	InterPro IPR003644; KEGG: cpi:Cpin_5094 conserved repeat domain protein; PFAM: Na-Ca exchanger/integrin-beta4; SPTR: Conserved repeat domain protein; PFAM: Calx-beta domain
YP_004053097.1	KEGG: cpi:Cpin_0370 hypothetical protein; SPTR: uncharacterized protein
YP_004053098.1	InterPro IPR012910: IPR000531; KEGG: gfo:GFO_2846 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004053099.1	COGs: COG0316 conserved hypothetical protein; InterPro IPR000361; KEGG: srm:SRM_01511 iron-sulfur cluster assembly accessory protein, putative; PFAM: HesB/YadR/YfhF-family protein; SPTR: Iron-sulfur cluster assembly accessory protein, putative; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_004053100.1	KEGG: chu:CHU_0763 hypothetical protein; SPTR: uncharacterized protein
YP_004053101.1	KEGG: fjo:Fjoh_1338 hypothetical protein; SPTR: uncharacterized protein
YP_004053102.1	KEGG: srm:SRM_02546 hypothetical protein; SPTR: uncharacterized protein
YP_004053103.1	InterPro IPR010652; KEGG: dfe:Dfer_4460 protein of unknown function DUF1232; PFAM: protein of unknown function DUF1232; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1232)
YP_004053104.1	KEGG: dfe:Dfer_4036 hypothetical protein; SPTR: uncharacterized protein
YP_004053105.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR000534; KEGG: zpr:ZPR_0284 NAD dependent epimerase/dehydratase protein; PFAM: Semialdehyde dehydrogenase NAD - binding; SPTR: Semialdehyde dehydrogenase NAD-binding; PFAM: NAD dependent epimerase/dehydratase family
YP_004053106.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: bfr:BF0097 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_004053107.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: gfo:GFO_0097 hypothetical protein; SPTR: Membrane protein, putative; PFAM: MMPL family
YP_004053108.1	COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR018394: IPR006050: IPR005101: IPR002081; KEGG: fps:FP2041 deoxyribodipyrimidine photolyase PhrB2; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; SPTR: Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase
YP_004053109.1	COGs: COG1038 Pyruvate carboxylase; InterProIPR000089: IPR011761: IPR011764: IPR000891: IPR 001882: IPR005479: IPR005930: IPR005481: IPR005482: IPR003379; KEGG: sli:Slin_4454 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; pyruvate carboxyltransferase; Conserved carboxylase region; biotin/lipoyl attachment domain-containing protein; SPTR: Pyruvate carboxylase; TIGRFAM: pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; HMGL-like; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; Conserved carboxylase domain; TIGRFAM: pyruvate carboxylase
YP_004053110.1	COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR002547: IPR001412: IPR015413: IPR014758: IPR 002304: IPR004495; KEGG: chu:CHU_2689 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; PRIAM: Methionine--tRNA ligase; SPTR: Methionine--tRNA ligase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_004053111.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: chu:CHU_0957 phosphoadenylyLSUlfate reductase (thioredoxin); PFAM: phosphoadenosine phosphosulfate reductase; SPTR: PhosphoadenylyLSUlfate reductase (Thioredoxin); PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin)
YP_004053112.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467: IPR003661: IPR003594: IPR011623: IPR 004358; KEGG: hmo:HM1_0638 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; Diverse 7TM receptor transmembrane region; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Lipoprotein, putative; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004053113.1	KEGG: pfa:PF11_0349 conserved Plasmodium protein; SPTR: Conserved Plasmodium protein
YP_004053114.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: chu:CHU_0958 ADP-glyceromanno-heptose 6-epimerase precursor; PFAM: NAD-dependent epimerase/dehydratase; SPTR: ADP-glyceromanno-heptose 6-epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_004053115.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601: IPR000276; KEGG: mma:MM_2470 surface layer protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: surface layer protein; PFAM: PKD domain
YP_004053116.1	KEGG: sli:Slin_6385 hypothetical protein; SPTR: uncharacterized protein
YP_004053117.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814: IPR005815; KEGG: phe:Phep_2566 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_004053118.1	COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: chu:CHU_2977 dethiobiotin synthetase; PRIAM: Dethiobiotin synthase; SPTR: Dethiobiotin synthetase; TIGRFAM: dethiobiotin synthase; TIGRFAM: dethiobiotin synthase
YP_004053119.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917: IPR004839; KEGG: fjo:Fjoh_0814 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_004053120.1	KEGG: aas:Aasi_0924 hypothetical protein; SPTR: uncharacterized protein
YP_004053121.1	KEGG: pyo:PY00649 rhoptry protein; SPTR: Conserved hypothetical phage-related protein
YP_004053122.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR011659: IPR006664; KEGG: chu:CHU_2008 outer membrane protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: OmpA family protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004053123.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR019734: IPR013026: IPR011716: IPR001440; KEGG: chu:CHU_3775 TPR repeat-containing protein; PFAM: hypothetical protein; hypothetical protein; SPTR: Tetratricopeptide repeat family; PFAM: Tetratricopeptide repeat
YP_004053124.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: rbi:RB2501_00466 aminopeptidase M1 family protein; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Aminopeptidase M1 family protein; PFAM: Peptidase family M1
YP_004053125.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089: IPR006092: IPR006091: IPR006090; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004053126.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: abo:ABO_0204 hypothetical protein; PFAM: transglutaminase domain-containing protein; SPTR: uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_004053127.1	InterPro IPR001647; KEGG: sfr:Sfri_3937 transcriptional regulator, TetR family protein; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family
YP_004053128.1	COGs: COG4922 conserved hypothetical protein; InterPro IPR009959; KEGG: vex:VEA_001568 possible membrane protein; PFAM: protein of unknown function DUF1486; SPTR: uncharacterized protein; PFAM: SnoaL-like polyketide cyclase
YP_004053129.1	KEGG: tet:TTHERM_00455290 TPR Domain containing protein; SPTR: GK11303
YP_004053130.1	KEGG: pbe:PB001277.00.0 RNA helicase; SPTR: SAR DNA-binding protein-1
YP_004053131.1	InterPro IPR012359: IPR004518; KEGG: pdi:BDI_2969 hypothetical protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: uncharacterized protein; PFAM: MazG nucleotide pyrophosphohydrolase domain
YP_004053132.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: phe:Phep_0480 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase family
YP_004053133.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845: IPR010944; KEGG: sli:Slin_0368 AMP nucleosidase; PFAM: purine or other phosphorylase family 1; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase, putative
YP_004053134.1	KEGG: dfe:Dfer_2421 hypothetical protein; SPTR: uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)
YP_004053135.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR018300: IPR001544; KEGG: sli:Slin_1202 aminotransferase class IV; PFAM: aminotransferase class IV; SPTR: Aminotransferase class IV; PFAM: Aminotransferase class IV
YP_004053136.1	COGs: COG1760 L-serine deaminase; InterPro IPR004643: IPR005131; KEGG: bmq:BMQ_4227 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase beta subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit
YP_004053137.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2866 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004053138.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_1204 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Membrane fusion efflux protein, putative; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053139.1	KEGG: phe:Phep_1930 hypothetical protein; SPTR: uncharacterized protein
YP_004053140.1	KEGG: kko:Kkor_1792 hypothetical protein; SPTR: uncharacterized protein
YP_004053141.1	KEGG: fjo:Fjoh_2211 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3307)
YP_004053142.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218: IPR006268; KEGG: rmr:Rmar_0597 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004053143.1	COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR018204: IPR002028; KEGG: zpr:ZPR_0829 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_004053144.1	COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR006653: IPR001926: IPR006654; KEGG: gfo:GFO_2673 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_004053145.1	COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: sli:Slin_5476 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_004053146.1	COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR001468: IPR013798; KEGG: cpi:Cpin_1825 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_004053147.1	COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR017459: IPR000312: IPR005940; KEGG: sli:Slin_5474 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_004053148.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR017926: IPR000991: IPR006220: IPR011702: IPR 001317: IPR006221; KEGG: bth:BT_0531 anthranilate synthase component II; PFAM: glutamine amidotransferase class-I; SPTR: Anthranilate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_004053149.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890: IPR019999; KEGG: cat:CA2559_06405 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme
YP_004053150.1	KEGG: bpo:BP951000_0269 uncharacterized protein-like protein; SPTR: uncharacterized protein
YP_004053151.1	COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837: IPR004481; KEGG: zpr:ZPR_3943 sodium/calcium exchanger protein; PFAM: sodium/calcium exchanger membrane region; SPTR: uncharacterized protein; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_004053152.1	KEGG: dak:DaAHT2_0310 hypothetical protein; SPTR: uncharacterized protein
YP_004053153.1	COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR011761: IPR013651; KEGG: fsu:Fisuc_2858 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: uncharacterized protein; PFAM: RimK-like ATP-grasp domain
YP_004053154.1	InterPro IPR006336; KEGG: zpr:ZPR_2567 GCS2 glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; SPTR: GCS2 glutamate--cysteine ligase; PFAM: Glutamate-cysteine ligase family 2(GCS2)
YP_004053155.1	COGs: COG3931 N-formylglutamate amidohydrolase; InterPro IPR007709; KEGG: tbd:Tbd_1455 N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; SPTR: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase
YP_004053156.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: gur:Gura_1597 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold
YP_004053157.1	InterPro IPR019288; KEGG: rbi:RB2501_05965 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: uncharacterized protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
YP_004053158.1	COGs: COG0557 Exoribonuclease R; InterProIPR003029: IPR001900: IPR013223: IPR011805: IPR 004476; KEGG: chu:CHU_0462 exoribonuclease II; PFAM: ribonuclease II; Ribonuclease B OB region domain; SPTR: Ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_004053159.1	KEGG: dfe:Dfer_3974 hypothetical protein; SPTR: uncharacterized protein
YP_004053160.1	COGs: COG2366 Protein related to penicillin acylase; InterPro IPR022272: IPR014395: IPR002692; KEGG: aas:Aasi_0772 hypothetical protein; PFAM: peptidase S45 penicillin amidase; SPTR: Penicillin acylase II; PFAM: Penicillin amidase
YP_004053161.1	KEGG: chu:CHU_3286 SAM-dependent methyltransferase; SPTR: uncharacterized protein
YP_004053162.1	KEGG: cyn:Cyan7425_2939 hypothetical protein; SPTR: uncharacterized protein
YP_004053163.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002471: IPR000073; KEGG: mac:MA2933 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_004053164.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: gfo:GFO_0177 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053165.1	KEGG: gfo:GFO_0178 membrane protein; SPTR: uncharacterized protein
YP_004053166.1	KEGG: sli:Slin_0165 hypothetical protein; SPTR: uncharacterized protein
YP_004053167.1	KEGG: sli:Slin_5723 transcriptional regulator, TetR family; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004053168.1	KEGG: sli:Slin_5722 hypothetical protein; SPTR: uncharacterized protein
YP_004053169.1	KEGG: sli:Slin_5721 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1475)
YP_004053170.1	COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: phe:Phep_2793 cupin; PFAM: cupin; SPTR: cupin; PFAM: Cupin domain
YP_004053171.1	KEGG: bth:BT_0302 hypothetical protein; SPTR: uncharacterized protein
YP_004053172.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR003439: IPR003593: IPR017871: IPR001036; KEGG: bth:BT_0300 AcrB/AcrD/AcrF family cation efflux protein; PFAM: acriflavin resistance protein; ABC transporter related; SMART: ATPase AAA; SPTR: uncharacterized protein; PFAM: ABC transporter; AcrB/AcrD/AcrF family
YP_004053173.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR005829: IPR001036; KEGG: bth:BT_0299 AcrB/AcrD/AcrF family cation efflux protein; PFAM: acriflavin resistance protein; SPTR: uncharacterized protein; PFAM: AcrB/AcrD/AcrF family
YP_004053174.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR018120: IPR006143; KEGG: bth:BT_0298 cation efflux system protein (outer membrane protein); SPTR: uncharacterized protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053175.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_0297 outer membrane lipoprotein SilC precursor; PFAM: outer membrane efflux protein; SPTR: uncharacterized protein; manually curated; PFAM: Outer membrane efflux protein
YP_004053176.1	KEGG: bth:BT_0296 xanthan lyase XalB precursor; SPTR: uncharacterized protein
YP_004053177.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: bth:BT_0295 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: uncharacterized protein; PFAM: ABC transporter
YP_004053178.1	KEGG: CTP:CTRG_03453 hypothetical protein; SPTR: Predicted protein
YP_004053179.1	COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: pdi:BDI_1103 transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family
YP_004053180.1	KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004053181.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: cpi:Cpin_7291 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004053182.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR018189: IPR001672; KEGG: cpi:Cpin_5494 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase
YP_004053183.1	COGs: COG2081 flavoprotein; InterPro IPR004792: IPR013027; KEGG: cpi:Cpin_5845 HI0933 family protein; PFAM: HI0933 family protein; SPTR: uncharacterized protein; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family
YP_004053184.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: chy:CHY_1115 transporter; PFAM: major facilitator superfamily MFS_1; SPTR: transporter; PFAM: Major Facilitator Superfamily
YP_004053185.1	COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: chu:CHU_0995 phosphoserine aminotransferase; PFAM: aminotransferase class V; SPTR: Aminotransferase, class V superfamily; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, putative; phosphoserine aminotransferase
YP_004053186.1	KEGG: rbi:RB2501_00566 hypothetical protein; SPTR: uncharacterized protein
YP_004053187.1	KEGG: rno:687472 hypothetical protein LOC687472; SPTR: uncharacterized protein
YP_004053188.1	KEGG: dre:286832 laminin, gamma 1; SPTR: Molybdenum (Mo2+) ABC superfamily ATP binding cassette transporter, binding protein
YP_004053189.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: dfe:Dfer_3568 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_004053190.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634: IPR002142: IPR004635; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type
YP_004053191.1	COGs: COG0502 Biotin synthase; InterPro IPR006638: IPR007197: IPR010722: IPR002684; KEGG: chu:CHU_2466 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase
YP_004053192.1	COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047; KEGG: fjo:Fjoh_1398 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase; PFAM: Alpha amylase, catalytic domain
YP_004053193.1	KEGG: zpr:ZPR_0921 hypothetical protein; SPTR: uncharacterized protein
YP_004053194.1	InterPro IPR013216; KEGG: pjd:Pjdr2_0933 transcriptional regulator, XRE family; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Tellurite resistance protein TehB
YP_004053195.1	KEGG: cfa:474948 dystonin; SPTR: uncharacterized protein
YP_004053196.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: cpi:Cpin_4988 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053197.1	KEGG: sil:SPO1532 hypothetical protein; SPTR: uncharacterized protein
YP_004053198.1	InterPro IPR017896: IPR017900; KEGG: chu:CHU_2228 ferredoxin; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding
YP_004053199.1	InterPro IPR019196; KEGG: cps:CPS_3140 hypothetical protein; PFAM: ABC-type uncharacterised transport system; SPTR: uncharacterized protein
YP_004053200.1	KEGG: kko:Kkor_2400 TPR repeat-containing protein; SPTR: TPR repeat-containing protein
YP_004053201.1	KEGG: ses:SARI_02606 hypothetical protein; SPTR: uncharacterized protein
YP_004053202.1	KEGG: ddf:DEFDS_0577 organic solvent tolerance protein; SPTR: Organic solvent tolerance protein
YP_004053203.1	InterPro IPR003675; KEGG: smb:smi_0531 metal-dependent membrane protease, CAAX amino terminal protease family protein; PFAM: Abortive infection protein; SPTR: Metal-dependent membrane protease, CAAX amino terminal protease family protein; PFAM: CAAX amino terminal protease family
YP_004053204.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: gme:Gmet_1507 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004053205.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: transmembrane protein; PFAM: Histidine kinase
YP_004053206.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: sli:Slin_5133 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004053207.1	InterPro IPR011600; KEGG: hch:HCH_04244 TPR repeat-containing protein; PFAM: peptidase C14 caspase catalytic subunit p20; SPTR: Tetratricopeptide repeat family protein, putative; PFAM: Caspase domain
YP_004053208.1	InterPro IPR002126; KEGG: rba:RB886 hypothetical protein; PFAM: Cadherin; SMART: Cadherin; SPTR: Fat protein-possibly involved in cell-cell attachment
YP_004053209.1	KEGG: ter:Tery_1906 Na-Ca exchanger/integrin-beta4; SPTR: Na-Ca exchanger/integrin-beta4; PFAM: Developmentally Regulated MAPK Interacting Protein
YP_004053210.1	KEGG: bmr:BMI_II41 sensor histidine kinase; SPTR: Two component sensor kinase
YP_004053211.1	KEGG: sli:Slin_1994 histidine kinase; SPTR: Histidine kinase
YP_004053212.1	COGs: COG1289 membrane protein; KEGG: gfo:GFO_1528 hypothetical protein; SPTR: Membrane protein containing DUF893; PFAM: Fusaric acid resistance protein family; TIGRFAM: hypothetical membrane protein, TIGR01666
YP_004053213.1	COGs: COG4430 conserved hypothetical protein; InterPro IPR016786: IPR014922; KEGG: fjo:Fjoh_2204 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004053214.1	InterPro IPR005545; KEGG: bcm:Bcenmc03_1734 YciI-like protein; PFAM: YCII-related; SPTR: uncharacterized protein; PFAM: YCII-related domain
YP_004053215.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: zpr:ZPR_4591 redox protein; PFAM: OsmC family protein; SPTR: Redox protein; PFAM: OsmC-like protein
YP_004053216.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: nth:Nther_1894 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053217.1	KEGG: pat:Patl_3310 hypothetical protein; SPTR: uncharacterized protein
YP_004053218.1	KEGG: tgu:100227641 ring finger protein 20; SPTR: uncharacterized protein
YP_004053219.1	KEGG: phe:Phep_3629 hypothetical protein; SPTR: uncharacterized protein
YP_004053220.1	KEGG: lsp:Bsph_1869 hypothetical protein; SPTR: uncharacterized protein
YP_004053221.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708; KEGG: fta:FTA_0507 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; SPTR: Shikimate/quinate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase
YP_004053222.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR005834: IPR010023: IPR006549; KEGG: mac:MA3766 acylneuraminate cytidylyltransferase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Phosphatase kdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_004053223.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718: IPR019904; KEGG: chu:CHU_2252 osmotically inducible protein; PFAM: OsmC family protein; SPTR: Osmotically inducible protein; TIGRFAM: peroxiredoxin, OsmC subfamily; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily
YP_004053224.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: zpr:ZPR_4711 integrase, catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region; PFAM: Integrase core domain
YP_004053225.1	InterPro IPR002514; KEGG: zpr:ZPR_4701 ISPsy11, transposase OrfA; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_004053226.1	KEGG: zpr:ZPR_2136 acyl-CoA reductase; SPTR: uncharacterized protein; PFAM: Acyl-CoA reductase (LuxC)
YP_004053227.1	COGs: COG2031 Short chain fatty acids transporter; InterPro IPR006160; KEGG: bha:BH0358 short-chain fatty acids transporter; PFAM: short chain fatty acid transporter; SPTR: Short-chain fatty acids transporter; PFAM: Short chain fatty acid transporter; TIGRFAM: conserved hypothetical integral membrane protein
YP_004053228.1	InterPro IPR007712; KEGG: coc:Coch_0496 hypothetical protein; PFAM: plasmid stabilization system; SPTR: RelE family toxin-antitoxin system toxin component; PFAM: Plasmid stabilisation system protein
YP_004053229.1	KEGG: fba:FIC_00593 hypothetical protein; SPTR: uncharacterized protein
YP_004053230.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR001345: IPR013078; KEGG: sli:Slin_2908 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase, putative; PFAM: Phosphoglycerate mutase family
YP_004053231.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: sli:Slin_2909 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase family protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_004053232.1	COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: dfe:Dfer_5138 chorismate binding-like protein; PFAM: Chorismate binding-like; SPTR: uncharacterized protein; PFAM: chorismate binding enzyme
YP_004053233.1	InterPro IPR000835; KEGG: zpr:ZPR_0838 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: MarR family transcriptional regulator; PFAM: MarR family
YP_004053234.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; KEGG: zpr:ZPR_0470 metallo-beta-lactamase; SPTR: Metallo-beta-lactamase
YP_004053235.1	KEGG: sli:Slin_3643 hypothetical protein; SPTR: uncharacterized protein
YP_004053236.1	COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114: IPR018220; KEGG: dfe:Dfer_4579 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_004053237.1	COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645: IPR003658; KEGG: chu:CHU_1702 anti-anti-sigma regulatory factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004053238.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: chu:CHU_1703 ferric uptake regulator protein; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulation protein Fur; PFAM: Ferric uptake regulator family
YP_004053239.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR003607: IPR006674: IPR007685: IPR004095: IPR 002912: IPR004811; KEGG: sli:Slin_1611 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_004053240.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881: IPR005215; KEGG: chu:CHU_1705 peptidyl-prolyl cis-trans isomerase, trigger factor; PFAM: trigger factor domain-containing protein; SPTR: FKBP-type peptidyl-prolyl cis-transisomerase (Trigger factor); TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor
YP_004053241.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR018215: IPR001907; KEGG: aas:Aasi_1180 hypothetical protein; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_004053242.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR003593: IPR002078: IPR010603: IPR013093: IPR 019489: IPR004487; KEGG: chu:CHU_1707 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_004053243.1	COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR011761: IPR013651: IPR004666; KEGG: gfo:GFO_3175 ribosomal protein S6 modification protein; PFAM: RimK domain protein ATP-grasp; SPTR: Ribosomal protein S6 modification protein; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family
YP_004053244.1	COGs: COG0460 Homoserine dehydrogenase; InterPro IPR019811: IPR005106: IPR001342; KEGG: phe:Phep_1873 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; PRIAM: Homoserine dehydrogenase; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain
YP_004053245.1	COGs: COG2021 Homoserine acetyltransferase; InterPro IPR008220: IPR000073; KEGG: dfe:Dfer_2669 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_004053246.1	COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR000277: IPR006235; KEGG: chu:CHU_0274 O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_004053247.1	InterPro IPR012506; KEGG: fps:FP1682 hypothetical protein; PFAM: YhhN family protein; SPTR: uncharacterized protein; PFAM: YhhN-like protein
YP_004053248.1	KEGG: fjo:Fjoh_4721 endonuclease I; SPTR: uncharacterized protein
YP_004053249.1	COGs: COG0063 sugar kinase; InterPro IPR000631: IPR004443; KEGG: dfe:Dfer_5089 carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region
YP_004053250.1	InterPro IPR017136; KEGG: pat:Patl_0150 zinc finger protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: Zinc finger protein; manually curated; PFAM: Uncharacterized protein conserved in bacteria (DUF2256)
YP_004053251.1	COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR017440: IPR005810: IPR003781: IPR005811; KEGG: zpr:ZPR_2376 succinyl-CoA ligase subunit alpha; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_004053252.1	COGs: COG4807 conserved hypothetical protein; InterPro IPR009921; KEGG: chu:CHU_3098 hypothetical protein; PFAM: protein of unknown function DUF1456; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1456)
YP_004053253.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR000387: IPR001763; KEGG: zpr:ZPR_1810 rhodanese-like protein; SMART: Rhodanese domain protein; SPTR: Rhodanese-like protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004053254.1	COGs: COG0730 permease; InterPro IPR002781; KEGG: cat:CA2559_12623 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004053255.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cpi:Cpin_7238 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Mate efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004053256.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: chu:CHU_1214 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide repeat domain protein
YP_004053257.1	KEGG: cpi:Cpin_2225 hypothetical protein; SPTR: uncharacterized protein
YP_004053258.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: chu:CHU_1401 M42 glutamyl aminopeptidase; PFAM: peptidase M42 family protein; PRIAM: Cellulase; SPTR: Endoglucanase; PFAM: M42 glutamyl aminopeptidase
YP_004053259.1	COGs: COG1278 Cold shock protein; InterPro IPR011129: IPR019844: IPR012156: IPR002059; KEGG: chu:CHU_0079 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding protein family; PFAM: 'Cold-shock' DNA-binding domain
YP_004053260.1	COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: abu:Abu_1105 phosphohistidine phosphatase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase family domain protein; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_004053261.1	InterPro IPR013026: IPR019734: IPR001440; KEGG: bpo:BP951000_1989 TPR domain-containing protein; PFAM: hypothetical protein; SPTR: TPR repeat-containing protein
YP_004053262.1	KEGG: aoe:Clos_1802 hypothetical protein; SPTR: uncharacterized protein
YP_004053263.1	InterPro IPR007744: IPR006342; KEGG: mmh:Mmah_0086 methyltransferase FkbM family; PFAM: Protein of unknown function DUF672; SPTR: Methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_004053264.1	KEGG: rmr:Rmar_0910 glycosyl hydrolase BNR repeat-containing protein; SPTR: BNR/Asp-box repeat domain protein; PFAM: BNR/Asp-box repeat
YP_004053265.1	KEGG: ptm:GSPATT00017112001 hypothetical protein; SPTR: Chromosome undetermined scaffold_51, whole genome shotgun sequence
YP_004053266.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: fba:FIC_02119 peptidase, M23/M37 family protein; PFAM: Peptidase M23; SPTR: Peptidase, M23/M37 family protein; PFAM: Peptidase family M23
YP_004053267.1	KEGG: sli:Slin_5160 hypothetical protein; SPTR: uncharacterized protein
YP_004053268.1	KEGG: cts:Ctha_0506 helix-hairpin-helix DNA-binding class 1; SPTR: uncharacterized protein
YP_004053269.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: str:Sterm_4110 MORN variant repeat protein; PFAM: MORN variant repeat-containing protein; SPTR: MORN variant repeat protein; PFAM: MORN repeat variant
YP_004053270.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: chu:CHU_2430 outer membrane protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat domain protein; manually curated; PFAM: Surface antigen variable number repeat; Surface antigen
YP_004053271.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: chu:CHU_2420 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein ALPR1_15124; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_004053272.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: chu:CHU_2419 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_004053273.1	COGs: COG0171 NAD synthase; InterPro IPR003010: IPR014445: IPR003694; KEGG: chu:CHU_2417 glutamine-dependent NAD(+) synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase
YP_004053274.1	COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR001159: IPR000999: IPR011907; KEGG: dfe:Dfer_3916 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Ribonuclease III; TIGRFAM: ribonuclease III; PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial
YP_004053275.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR018201: IPR014030: IPR014031: IPR017568; KEGG: dfe:Dfer_3915 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_004053276.1	COGs: COG0236 Acyl carrier protein; InterPro IPR009081: IPR006162: IPR006163: IPR003231; KEGG: chu:CHU_1398 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004053277.1	KEGG: chu:CHU_1399 hypothetical protein; SPTR: uncharacterized protein
YP_004053278.1	COGs: COG0469 Pyruvate kinase; InterPro IPR018209: IPR015793: IPR015794: IPR001697; KEGG: chu:CHU_1400 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_004053279.1	KEGG: sfr:Sfri_2036 hypothetical protein; SPTR: uncharacterized protein
YP_004053280.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR005467: IPR001789: IPR003594: IPR000014; KEGG: fjo:Fjoh_4627 multi-sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; response regulator receiver; SMART: response regulator receiver; ATPase ATP-binding protein; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; TIGRFAM: PAS domain S-box
YP_004053281.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792: IPR001789; KEGG: phe:Phep_2735 response regulator receiver; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Transcriptional regulator, LuxR family protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004053282.1	InterPro IPR002641; KEGG: chu:CHU_1718 hypothetical protein; PFAM: Patatin; SPTR: uncharacterized protein; PFAM: Patatin-like phospholipase
YP_004053283.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: pam:PANA_1805 YjeP; PFAM: MscS Mechanosensitive ion channel; SPTR: YjeP; PFAM: Mechanosensitive ion channel
YP_004053284.1	KEGG: ilo:IL0085 hypothetical protein; SPTR: Uncharacterized conserved coiled coil protein
YP_004053285.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089: IPR006092: IPR006091: IPR006090; KEGG: rbi:RB2501_04215 acyl-CoA dehydrogenase-like protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004053286.1	COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); InterPro IPR004981; KEGG: phe:Phep_0260 tryptophan 2 3-dioxygenase (vermilion); PFAM: tryptophan 23-dioxygenase; SPTR: Tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase
YP_004053287.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR018337: IPR011652; KEGG: chu:CHU_1410 hypothetical protein; PFAM: MORN variant repeat-containing protein; SPTR: uncharacterized protein; PFAM: MORN repeat variant
YP_004053288.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR013027: IPR006076; KEGG: chu:CHU_1411 NAD(FAD)-dependent dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; SPTR: NAD-utilizing dehydrogenases; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004053289.1	COGs: COG1832 CoA-binding protein; KEGG: chu:CHU_1412 hypothetical protein; SPTR: uncharacterized protein
YP_004053290.1	InterPro IPR003660: IPR003018; KEGG: npu:Npun_R2375 multi-sensor hybrid histidine kinase; PFAM: histidine kinase HAMP region domain protein; GAF domain protein; SMART: GAF domain protein; SPTR: Hamp domain protein; PFAM: HAMP domain; GAF domain
YP_004053291.1	KEGG: tde:TDE0236 PilT domain-containing protein; SPTR: PIN domain protein
YP_004053292.1	KEGG: zpr:ZPR_4526 hypothetical protein; SPTR: uncharacterized protein
YP_004053293.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR020565: IPR000807: IPR005954: IPR006543; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; PFAM: Polynucleotide kinase 3 phosphatase; Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase family domain; histidinol-phosphatase
YP_004053294.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR011622: IPR011623: IPR010822; KEGG: chu:CHU_1988 sensor protein for response regulator AtoC; PFAM: Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Probable two-component sensor, putative; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; Stage II sporulation protein E (SpoIIE)
YP_004053295.1	KEGG: dfe:Dfer_2683 conserved hypothetical protein, secreted; SPTR: Branched-chain amino acid aminotransferase
YP_004053296.1	KEGG: tet:TTHERM_00666840 hypothetical protein; SPTR: uncharacterized protein
YP_004053297.1	COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR001412: IPR002300: IPR013155: IPR002302; KEGG: phe:Phep_3538 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; aminoacyl-tRNA synthetase class Ia; SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_004053298.1	KEGG: ecy:ECSE_0630 hypothetical protein; SPTR: uncharacterized protein
YP_004053299.1	KEGG: sli:Slin_2807 hypothetical protein; SPTR: uncharacterized protein
YP_004053300.1	COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: zpr:ZPR_0018 LysE type amino acid translocator; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Translocator protein, LysE family; PFAM: LysE type translocator
YP_004053301.1	InterPro IPR004993; KEGG: dfe:Dfer_0473 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: plant auxin-regulated protein; PFAM: GH3 auxin-responsive promoter
YP_004053302.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078: IPR001608; KEGG: gfo:GFO_0664 alanine racemase [fragment]; PFAM: alanine racemase domain protein; SPTR: uncharacterized protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_004053303.1	COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: dfe:Dfer_2013 protein of unknown function DUF423; PFAM: protein of unknown function DUF423; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF423)
YP_004053304.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: chu:CHU_1911 MORN repeat-containing protein; PFAM: MORN variant repeat-containing protein; SPTR: Hypothetical exported 24-amino acid repeat protein; PFAM: MORN repeat variant
YP_004053305.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterProIPR020615: IPR020610: IPR020613: IPR002155: IPR 020616: IPR020617; KEGG: dfe:Dfer_2430 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004053306.1	KEGG: gur:Gura_2173 TPR repeat-containing protein
YP_004053307.1	InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor, type A, putative; PFAM: von Willebrand factor type A domain
YP_004053308.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cat:CA2559_11843 transposase; PFAM: integrase family protein; SPTR: Phage integrase family protein; PFAM: Phage integrase family
YP_004053309.1	InterPro IPR000875; KEGG: fps:FP1574 hypothetical protein; SPTR: uncharacterized protein
YP_004053310.1	KEGG: zpr:ZPR_2233 DNA-binding protein; SPTR: DNA-binding protein
YP_004053311.1	KEGG: chu:CHU_1184 hypothetical protein; SPTR: uncharacterized protein; PFAM: AFG1-like ATPase
YP_004053312.1	KEGG: chu:CHU_0726 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3703)
YP_004053313.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: rbi:RB2501_04910 hypothetical protein; SPTR: uncharacterized protein; PFAM: Ferric uptake regulator family
YP_004053314.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: gfo:GFO_0025 CDF family cation efflux protein; PFAM: cation efflux protein; SPTR: CDF family cation efflux protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004053315.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121: IPR002524; KEGG: zpr:ZPR_4062 integral membrane protein; PFAM: cation efflux protein; SPTR: Integral membrane protein; manually curated; PFAM: Cation efflux family; Heavy-metal-associated domain
YP_004053316.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: gfo:GFO_1187 HlyD family secretion protein; SPTR: lipoprotein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053317.1	COGs: COG3696 silver efflux pump; InterPro IPR001036: IPR003423: IPR004763; KEGG: gfo:GFO_1186 AcrB/AcrD/AcrF family heavy metal cation efflux protein; PFAM: acriflavin resistance protein; outer membrane efflux protein; SPTR: transport-related, membrane protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004053318.1	KEGG: gfo:GFO_0030 hypothetical protein; SPTR: uncharacterized protein
YP_004053319.1	InterPro IPR015018; KEGG: sli:Slin_5574 hypothetical protein; PFAM: Domain of unknown function DUF1905; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1905)
YP_004053320.1	InterPro IPR020683: IPR002110; KEGG: tva:TVAG_184130 ankyrin repeat protein; PFAM: Ankyrin; SPTR: Ankyrin repeat protein, putative
YP_004053321.1	KEGG: gur:Gura_3599 hypothetical protein; SPTR: uncharacterized protein
YP_004053322.1	COGs: COG3943 Virulence protein; InterPro IPR011204; KEGG: clj:CLJU_c00540 hypothetical protein; SPTR: uncharacterized protein
YP_004053323.1	KEGG: zpr:ZPR_3366 hypothetical protein; SPTR: uncharacterized protein
YP_004053324.1	InterPro IPR001845; KEGG: sli:Slin_6743 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: ArsR family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family
YP_004053325.1	COGs: COG2608 Copper chaperone; InterPro IPR006121: IPR017969: IPR003457; KEGG: zpr:ZPR_3374 mercuric transport protein; PFAM: Heavy metal transport/detoxification protein; Mercuric transport protein MerT; SPTR: Mercuric transport protein; PFAM: Heavy-metal-associated domain; MerT mercuric transport protein
YP_004053326.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099: IPR000815; KEGG: gfo:GFO_1323 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Glutathione reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004053327.1	KEGG: fjo:Fjoh_3090 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004053329.1	SPTR: IP17725p
YP_004053330.1	KEGG: abu:Abu_1680 hypothetical protein; SPTR: uncharacterized protein
YP_004053332.1	KEGG: chu:CHU_1188 hypothetical protein; SPTR: uncharacterized protein
YP_004053333.1	KEGG: fps:FP1547 hypothetical protein; SPTR: uncharacterized protein
YP_004053334.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR: uncharacterized protein
YP_004053335.1	KEGG: cat:CA2559_00470 hypothetical protein; SPTR: uncharacterized protein
YP_004053336.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR011659: IPR006664; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004053337.1	InterPro IPR019861; KEGG: cpi:Cpin_3624 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004053338.1	COGs: COG5271 ATPase AAA containing von Willebrand factor type A (vWA) domain; InterPro IPR003367: IPR001434; KEGG: gfo:GFO_0054 cadherin domain-containing proteins; SPTR: Secreted protein containing cadherin domains; TIGRFAM: conserved repeat domain protein
YP_004053339.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467: IPR000014: IPR000700: IPR013656: IPR 003594: IPR004358; KEGG: rbi:RB2501_13794 two component system histidine kinase/response regulator fusion protein; PFAM: ATPase ATP-binding protein; PAS fold-4 domain protein; SMART: ATPase ATP-binding protein; PAS domain containing protein; SPTR: Possible sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_004053340.1	KEGG: sli:Slin_5143 hypothetical protein; SPTR: uncharacterized protein
YP_004053341.1	KEGG: nha:Nham_2477 hypothetical protein; SPTR: uncharacterized protein
YP_004053342.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: sli:Slin_5141 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053344.1	KEGG: dfe:Dfer_5762 hypothetical protein; SPTR: uncharacterized protein
YP_004053345.1	KEGG: phe:Phep_3212 hypothetical protein; SPTR: uncharacterized protein
YP_004053346.1	InterPro IPR007492; KEGG: fjo:Fjoh_0682 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; PFAM: LytTr DNA-binding domain
YP_004053347.1	InterPro IPR003675; KEGG: xac:XAC3293 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein; PFAM: CAAX amino terminal protease family
YP_004053348.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: vex:VEA_002339 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_004053349.1	KEGG: cpi:Cpin_3257 protein of unknown function DUF1200; SPTR: Lipoprotein, putative; PFAM: Protein of unknown function (DUF1200)
YP_004053350.1	COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: fjo:Fjoh_1572 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Oxidoreductase, 2OG-Fe(II) oxygenase family protein; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_004053351.1	InterPro IPR006917; KEGG: cpb:Cphamn1_2389 SOUL heme-binding protein; PFAM: SOUL heme-binding protein; SPTR: uncharacterized protein; PFAM: SOUL heme-binding protein
YP_004053352.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: gfo:GFO_0311 universal stress protein family protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein family protein; PFAM: Universal stress protein family
YP_004053353.1	KEGG: tet:TTHERM_00037430 ABC transporter family protein; SPTR: uncharacterized protein
YP_004053354.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR006195: IPR004365: IPR004364: IPR018149: IPR 002313; KEGG: chu:CHU_0741 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_004053355.1	InterPro IPR002872; KEGG: dfe:Dfer_4393 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase
YP_004053356.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002701: IPR006218: IPR020822; KEGG: sli:Slin_5731 DAHP synthetase I/KdsA; PFAM: Chorismate mutase, type II; DAHP synthetase I/KDSA; SPTR: DAHP synthetase I/KDSA; PFAM: Chorismate mutase type II; DAHP synthetase I family
YP_004053357.1	COGs: COG0077 Prephenate dehydratase; InterPro IPR001086; KEGG: hiq:CGSHiGG_09385 cell division protein FtsZ; PFAM: prephenate dehydratase; SPTR: Prephenate dehydratase; PFAM: Prephenate dehydratase
YP_004053358.1	KEGG: dfe:Dfer_5240 DNA polymerase beta domain protein region; SPTR: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_004053359.1	InterPro IPR010235; KEGG: pdi:BDI_3665 hypothetical protein; PFAM: Nucleotidyltransferase substrate binding protein HI0074; SPTR: Nucleotidyltransferase substrate binding protein; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein like; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family
YP_004053360.1	COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: pat:Patl_1937 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004053361.1	InterPro IPR013538; KEGG: rbi:RB2501_11797 hypothetical protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004053362.1	InterPro IPR019587; KEGG: swp:swp_4288 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_004053363.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002701: IPR006218: IPR020822; KEGG: rbi:RB2501_03045 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; PFAM: Chorismate mutase, type II; DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: chorismate mutase; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004053364.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658: IPR016037: IPR016303; KEGG: dfe:Dfer_3640 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_004053365.1	KEGG: zpr:ZPR_2458 hypothetical protein; SPTR: uncharacterized protein
YP_004053366.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986: IPR016228; KEGG: chu:CHU_0717 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004053367.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: fjo:Fjoh_2323 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein
YP_004053368.1	KEGG: slt:Slit_0937 hypothetical protein; SPTR: uncharacterized protein
YP_004053369.1	KEGG: app:CAP2UW1_2790 hypothetical protein; SPTR: uncharacterized protein
YP_004053370.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: chu:CHU_0315 aminopeptidase; PFAM: peptidase M42 family protein; SPTR: Aminopeptidase; PFAM: M42 glutamyl aminopeptidase
YP_004053371.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: gfo:GFO_0275 amidohydrolase family protein; PFAM: amidohydrolase; SPTR: Xaa-Pro dipeptidase family enzyme; PFAM: Amidohydrolase family
YP_004053372.1	KEGG: chu:CHU_0933 hypothetical protein; SPTR: uncharacterized protein
YP_004053373.1	COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: gfo:GFO_2057 hypothetical protein; PFAM: protein of unknown function DUF479; SPTR: Protein containing DUF479; PFAM: Protein of unknown function, DUF479
YP_004053374.1	InterPro IPR013519; KEGG: mmr:Mmar10_2781 outer membrane autotransporter; SPTR: Glycosyl hydrolase, BNR repeat
YP_004053375.1	KEGG: chu:CHU_0212 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cna protein B-type domain
YP_004053376.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: chu:CHU_3762 fatty acid desaturase; PFAM: fatty acid desaturase; PRIAM: Linoleoyl-CoA desaturase; SPTR: Fatty acid desaturase; PFAM: Fatty acid desaturase
YP_004053378.1	COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: gfo:GFO_3603 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2064)
YP_004053379.1	COGs: COG4134 ABC transporter periplasmic component; InterPro IPR006059; KEGG: drt:Dret_2122 ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Protein YnjB; PFAM: Bacterial extracellular solute-binding protein
YP_004053380.1	COGs: COG4135 ABC transporter permease component; InterPro IPR000515; KEGG: cby:CLM_1266 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004053381.1	COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: amt:Amet_3293 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC-transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004053382.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: cbi:CLJ_B1158 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Sulfate/thiosulfate import ATP-binding protein CysA; PFAM: ABC transporter
YP_004053383.1	COGs: COG1957 Inosine-uridine nucleoside N-ribohydrolase; InterPro IPR001910; KEGG: stp:Strop_1316 inosine/uridine-preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; SPTR: Inosine-uridine preferring nucleoside hydrolase; PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_004053384.1	COGs: COG4857 kinase; InterPro IPR002575; KEGG: rbi:RB2501_08800 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: Methylthioribose kinase; PFAM: Phosphotransferase enzyme family; TIGRFAM: 5-methylthioribose kinase
YP_004053385.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: cat:CA2559_04165 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004053386.1	KEGG: cat:CA2559_04170 hypothetical protein; SPTR: uncharacterized protein
YP_004053387.1	KEGG: geo:Geob_2748 hypothetical protein; SPTR: uncharacterized protein
YP_004053388.1	COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR003714: IPR006596; KEGG: chu:CHU_2279 PhoH-related protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: PhoH family protein; PFAM: PhoH-like protein
YP_004053389.1	KEGG: phe:Phep_1930 hypothetical protein; SPTR: uncharacterized protein
YP_004053390.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017: IPR005475: IPR005476; KEGG: cpi:Cpin_1538 transketolase central region; PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain-containing protein; SPTR: Transketolase central region; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004053391.1	COGs: COG0633 Ferredoxin; InterPro IPR001041: IPR001055; KEGG: dfe:Dfer_0408 ferredoxin; PFAM: ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004053392.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027: IPR000103; KEGG: sli:Slin_3270 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Probable thioredoxin resuctase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004053393.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5141 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: transmembrane sensor histidine kinase transcription regulator protein; PFAM: Histidine kinase
YP_004053394.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: sli:Slin_2906 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system, regulatory protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004053395.1	KEGG: rbi:RB2501_12192 hypothetical protein; SPTR: uncharacterized protein
YP_004053396.1	COGs: COG2936 acyl esterase; InterPro IPR005674; KEGG: fjo:Fjoh_4602 peptidase S15; SPTR: Peptidase family S15-like protein; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family
YP_004053397.1	InterPro IPR003675; KEGG: lga:LGAS_0717 metal-dependent membrane protease; PFAM: Abortive infection protein; SPTR: Integral membrane protein PlnU, membrane-bound protease CAAX family; PFAM: CAAX amino terminal protease family
YP_004053398.1	KEGG: zpr:ZPR_1937 acetyltransferase; SPTR: Acetyltransferase
YP_004053399.1	COGs: COG5616 integral membrane protein; InterProIPR018060: IPR013026: IPR000005: IPR020449: IPR 018062: IPR005829: IPR019734; KEGG: rbi:RB2501_05325 serine/threonine kinase; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: Probable serine/threonine kinase; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004053400.1	COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110: IPR020683; KEGG: rbi:RB2501_05330 ankyrin; SPTR: Ankyrin repeat domain protein; PFAM: Ankyrin repeat
YP_004053401.1	KEGG: rbi:RB2501_05335 acyltransferase family protein; SPTR: uncharacterized protein; PFAM: Acyltransferase family
YP_004053402.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rbi:RB2501_12082 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; SPTR: D-alanyl-D-alanine carboxypeptidase; PFAM: Beta-lactamase
YP_004053403.1	KEGG: ptm:GSPATT00011521001 hypothetical protein; SPTR: uncharacterized protein
YP_004053404.1	COGs: COG5616 integral membrane protein; InterProIPR018060: IPR019734: IPR013026: IPR001440: IPR 000005; KEGG: rlg:Rleg_3418 adenylate/guanylate cyclase with TPR repeats; PFAM: helix-turn-helix- domain containing protein AraC type; hypothetical protein; PRIAM: Adenylate cyclase; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinase; PFAM: Tetratricopeptide repeat
YP_004053405.1	COGs: COG0645 kinase; KEGG: rfr:Rfer_0177 hypothetical protein; SPTR: uncharacterized protein; PFAM: Zeta toxin
YP_004053406.1	COGs: COG4430 conserved hypothetical protein; KEGG: zpr:ZPR_3958 hypothetical protein; SPTR: uncharacterized protein
YP_004053407.1	InterPro IPR013538; KEGG: gau:GAU_3468 hypothetical protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004053408.1	KEGG: rbi:RB2501_05960 hypothetical protein; SPTR: uncharacterized protein
YP_004053409.1	KEGG: zpr:ZPR_4296 membrane protein; SPTR: uncharacterized protein; manually curated
YP_004053410.1	KEGG: cat:CA2559_01880 hypothetical protein; SPTR: uncharacterized protein
YP_004053411.1	KEGG: phe:Phep_0972 hypothetical protein; SPTR: uncharacterized protein
YP_004053412.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_0615 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004053413.1	KEGG: gfo:GFO_0614 hypothetical protein; SPTR: uncharacterized protein
YP_004053414.1	KEGG: coc:Coch_1373 hypothetical protein; SPTR: uncharacterized protein
YP_004053415.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR019734: IPR013026: IPR000801: IPR001440; KEGG: sli:Slin_2144 esterase; PFAM: esterase; hypothetical protein; SPTR: esterase; PFAM: esterase
YP_004053416.1	KEGG: sse:Ssed_2789 hypothetical protein; SPTR: uncharacterized protein
YP_004053417.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sus:Acid_2378 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004053418.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR019734: IPR013026: IPR000801: IPR001440; KEGG: sli:Slin_2109 esterase; PFAM: hypothetical protein; esterase; SMART: Tetratricopeptide repeat; SPTR: Predicted hydrolase of the alpha/beta superfamily protein; PFAM: Tetratricopeptide repeat; esterase
YP_004053419.1	InterPro IPR003675; KEGG: rbi:RB2501_12077 CAAX amino terminal protease family protein; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease family family protein; PFAM: CAAX amino terminal protease family
YP_004053420.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149; KEGG: bwe:BcerKBAB4_0162 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004053421.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: bwe:BcerKBAB4_1138 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004053422.1	KEGG: bwe:BcerKBAB4_1618 D-alanyl-D-alanine carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase
YP_004053423.1	KEGG: sru:SRU_2526 hypothetical protein; SPTR: uncharacterized protein
YP_004053424.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0424 RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053425.1	KEGG: rbi:RB2501_16214 hypothetical protein; SPTR: uncharacterized protein
YP_004053426.1	KEGG: smt:Smal_0137 hypothetical protein; SPTR: uncharacterized protein
YP_004053427.1	InterPro IPR004843: IPR006186; KEGG: gsu:GSU2630 serine/threonine protein phosphatase, putative; PFAM: metallophosphoesterase; SPTR: Serine/threonine protein phosphatase, putative; PFAM: Calcineurin-like phosphoesterase
YP_004053428.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_1079 NmrA family protein; SPTR: NmrA-like family protein; PFAM: NmrA-like family
YP_004053429.1	COGs: COG2910 NADH-flavin reductase; KEGG: tra:Trad_0489 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family
YP_004053430.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cyh:Cyan8802_1702 transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; SPTR: uncharacterized protein; PFAM: HxlR-like helix-turn-helix
YP_004053431.1	COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: gfo:GFO_1955 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase
YP_004053432.1	InterPro IPR019734: IPR013026; KEGG: gfo:GFO_0706 TPR repeat-containing protein; SPTR: TPR repeat-containing protein
YP_004053433.1	KEGG: sli:Slin_4964 hypothetical protein; SPTR: uncharacterized protein
YP_004053434.1	KEGG: eay:EAM_2552 flagellar hook protein; SPTR: uncharacterized protein
YP_004053435.1	InterPro IPR005149; KEGG: phe:Phep_0467 transcriptional regulator PadR family protein; PFAM: transcriptional regulator PadR family protein; SPTR: Transcriptional regulator PadR family protein; PFAM: Transcriptional regulator PadR-like family
YP_004053436.1	COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: sli:Slin_2743 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain; Protein of unknown function (DUF2807)
YP_004053437.1	KEGG: dha:DEHA2E17930g DEHA2E17930p; SPTR: DEHA2E17930p
YP_004053438.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: mmb:Mmol_0837 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_004053439.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: rbi:RB2501_07245 metallo-beta-lactamase superfamily protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004053440.1	KEGG: bcl:ABC1108 hypothetical protein; SPTR: uncharacterized protein
YP_004053441.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: cpi:Cpin_6586 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004053442.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559: IPR003594; KEGG: phe:Phep_1541 histidine kinase internal region; PFAM: histidine kinase internal region; ATPase ATP-binding protein; SPTR: Signal transduction ATPase, FimS family protein; PFAM: Histidine kinase
YP_004053443.1	KEGG: cpi:Cpin_6589 transmembrane protein; SPTR: transmembrane protein; PFAM: Predicted membrane protein (DUF2154)
YP_004053444.1	KEGG: cpi:Cpin_6818 hypothetical protein; SPTR: uncharacterized protein
YP_004053445.1	KEGG: fph:Fphi_0775 hypothetical protein; SPTR: uncharacterized protein
YP_004053446.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR005467: IPR003594; KEGG: cpi:Cpin_6820 histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Probable two-component sensor; manually curated; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004053447.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792: IPR001789; KEGG: dfe:Dfer_2281 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004053448.1	KEGG: cps:CPS_0799 hypothetical protein; SPTR: uncharacterized protein; PFAM: Semialdehyde dehydrogenase, NAD binding domain
YP_004053449.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: dfe:Dfer_3459 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053450.1	KEGG: bvu:BVU_0051 hypothetical protein; SPTR: uncharacterized protein
YP_004053451.1	KEGG: sli:Slin_5683 hypothetical protein; SPTR: uncharacterized protein
YP_004053452.1	KEGG: bbo:BBOV_II006600 hypothetical protein; SPTR: uncharacterized protein
YP_004053453.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467: IPR013026: IPR001440: IPR003594: IPR 004358: IPR019734; KEGG: gfo:GFO_0018 adenylate/guanylate cyclase catalytic domain-containing protein; PFAM: ATPase ATP-binding protein; hypothetical protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; SPTR: Secreted protein containing adenylate/guanylate cyclase catalytic domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004053454.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR017871: IPR003593; KEGG: chu:CHU_2216 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004053455.1	KEGG: sea:SeAg_B2454 ShdA; SPTR: uncharacterized protein
YP_004053456.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_0121 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_004053457.1	KEGG: cat:CA2559_02030 hypothetical protein; SPTR: uncharacterized protein
YP_004053458.1	COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: pdi:BDI_3545 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII
YP_004053459.1	COGs: COG0388 amidohydrolase; InterPro IPR003010: IPR000132; KEGG: sti:Sthe_2746 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase 4; PFAM: Carbon-nitrogen hydrolase
YP_004053460.1	InterPro IPR000620; KEGG: gym:GYMC10_3377 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Drug/Metabolite exporter family transporter; PFAM: EamA-like transporter family
YP_004053461.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836: IPR006162: IPR004467; KEGG: chu:CHU_2669 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase
YP_004053462.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR018329: IPR 014001; KEGG: dfe:Dfer_3780 ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family
YP_004053463.1	KEGG: rrs:RoseRS_3906 SpoVT/AbrB domain-containing protein; SPTR: Virulence associated protein B
YP_004053464.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753: IPR018376; KEGG: chu:CHU_2974 methylglutaconyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Methylglutaconyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004053465.1	COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: aas:Aasi_0450 hypothetical protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein, putative; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein
YP_004053466.1	COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: sli:Slin_1919 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004053467.1	COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: sli:Slin_1917 PhoH family protein; PFAM: PhoH family protein; SPTR: Phosphate starvation-inducible protein, PhoH; PFAM: PhoH-like protein
YP_004053468.1	COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: chu:CHU_2970 hypothetical protein; PFAM: protein of unknown function DUF62; SPTR: uncharacterized protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase
YP_004053469.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092: IPR006091: IPR006090: IPR002655: IPR 012258; KEGG: fjo:Fjoh_3394 acyl-CoA oxidase domain-containing protein; PFAM: acyl-CoA oxidase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein; SPTR: Predicted acyl-CoA oxidase domain protein; PFAM: Acyl-CoA oxidase; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004053470.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734: IPR013026: IPR001440; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; PFAM: hypothetical protein; SPTR: Tetratricopeptide TPR_2; PFAM: Tetratricopeptide repeat
YP_004053471.1	COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: dfe:Dfer_0246 peptidase T2 asparaginase 2; PFAM: peptidase T2 asparaginase 2; PRIAM: Beta-aspartyl-peptidase; SPTR: Peptidase T2 asparaginase 2; PFAM: Asparaginase
YP_004053472.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: zpr:ZPR_1492 transmembrane family 2 fatty acid desaturase; PFAM: fatty acid desaturase; PRIAM: Linoleoyl-CoA desaturase; SPTR: Transmembrane family 2 fatty acid desaturase; PFAM: Fatty acid desaturase
YP_004053473.1	COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: vsp:VS_2958 hypothetical protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_004053474.1	KEGG: cat:CA2559_06060 hypothetical protein; SPTR: uncharacterized protein
YP_004053475.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: fjo:Fjoh_4932 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: uncharacterized protein; PFAM: ABC transporter
YP_004053476.1	KEGG: tet:TTHERM_00703420 hypothetical protein; SPTR: uncharacterized protein
YP_004053477.1	KEGG: cpi:Cpin_5460 hypothetical protein; SPTR: uncharacterized protein
YP_004053478.1	KEGG: zpr:ZPR_2065 hypothetical protein; SPTR: uncharacterized protein
YP_004053479.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: cpi:Cpin_5462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: Sigma-70, region 4 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1
YP_004053480.1	KEGG: fba:FIC_01610 secreted protein; SPTR: uncharacterized protein
YP_004053481.1	COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR008778: IPR012093; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin
YP_004053482.1	InterPro IPR000835; KEGG: sli:Slin_0365 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator; PFAM: MarR family
YP_004053483.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: gfo:GFO_0039 N-ethylmaleimide reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: N-ethylmaleimide reductase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_004053484.1	KEGG: bfo:BRAFLDRAFT_99083 hypothetical protein; SPTR: uncharacterized protein
YP_004053485.1	KEGG: ptm:GSPATT00015472001 hypothetical protein; SPTR: uncharacterized protein
YP_004053486.1	KEGG: zpr:ZPR_4660 hypothetical protein; SPTR: Cellulosome protein dockerin type I
YP_004053487.1	KEGG: dvm:DvMF_2950 flagellin domain protein; SPTR: Flagellin domain protein
YP_004053488.1	InterPro IPR014966; KEGG: shl:Shal_2186 FRG domain-containing protein; PFAM: FRG domain protein; SPTR: FRG domain protein; PFAM: FRG domain
YP_004053489.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356: IPR002296: IPR002052; KEGG: nhl:Nhal_3964 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: N-6 DNA methylase; PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_004053490.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mmw:Mmwyl1_3199 restriction modification system DNA specificity subunit; PFAM: restriction modification system DNA specificity domain; SPTR: Type I restriction enzyme StySJI specificity protein; PFAM: Type I restriction modification DNA specificity domain
YP_004053491.1	COGs: COG3472 conserved hypothetical protein; InterPro IPR004919: IPR018651; KEGG: vfi:VF_A0536 hypothetical protein; PFAM: Protein of unknown function DUF2081; protein of unknown function DUF262; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2081); Protein of unknown function DUF262
YP_004053492.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterProIPR014021: IPR001650: IPR007409: IPR006935: IPR 014001; KEGG: nhl:Nhal_3962 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; helicase domain protein; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: Type III restriction protein res subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Domain of unknown function (DUF3559)
YP_004053493.1	KEGG: pru:PRU_0781 hypothetical protein; SPTR: uncharacterized protein; PFAM: HEPN domain
YP_004053494.1	KEGG: dan:Dana_GF17207 GF17207 gene product from transcript GF17207-RA; SPTR: Phosphotriesterase-related protein
YP_004053495.1	KEGG: vsa:VSAL_II0661 hypothetical protein; SPTR: uncharacterized protein
YP_004053497.1	KEGG: brm:Bmur_0150 apolipoprotein A1/A4/E; SPTR: Apolipoprotein A1/A4/E
YP_004053498.1	KEGG: pcr:Pcryo_2466 Fmu (Sun); SPTR: uncharacterized protein
YP_004053499.1	KEGG: fjo:Fjoh_2677 helix-turn-helix domain-containing protein; SPTR: Helix-turn-helix domain protein
YP_004053500.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: sus:Acid_2947 resolvase domain-containing protein; PFAM: Resolvase domain; SPTR: Probable DNA-invertase (Site-specific recombinase); PFAM: Resolvase, N terminal domain
YP_004053501.1	KEGG: ptm:GSPATT00015472001 hypothetical protein; SPTR: uncharacterized protein
YP_004053502.1	KEGG: bfo:BRAFLDRAFT_99083 hypothetical protein; SPTR: uncharacterized protein
YP_004053503.1	KEGG: vpo:Kpol_2000p34 hypothetical protein; SPTR: uncharacterized protein
YP_004053504.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; tmRNA as predicted by Rfam (RF00023), score 131.11; PFAM: Phage integrase family
YP_004053505.1	COGs: COG0176 Transaldolase; InterPro IPR001585: IPR018225: IPR004731; KEGG: chu:CHU_2529 translaldolase; PFAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family
YP_004053506.1	KEGG: chu:CHU_2530 hypothetical protein; SPTR: Fructose-6-phosphate aldolase
YP_004053507.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR003439: IPR017871: IPR003593; KEGG: dfe:Dfer_5046 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ATP-binding protein involved in cell division; PFAM: ABC transporter
YP_004053508.1	KEGG: bba:Bd1712 cell wall surface anchor family protein; SPTR: Cell wall surface anchor family protein
YP_004053509.1	InterPro IPR001611; KEGG: osa:4327633 hypothetical protein; PFAM: leucine-rich repeat-containing protein; SPTR: Disease resistance protein; PFAM: Leucine Rich Repeat
YP_004053510.1	COGs: COG0295 Cytidine deaminase; InterPro IPR002125: IPR016192; KEGG: cat:CA2559_05460 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_004053511.1	KEGG: dre:449864 si:dkey-154b17.1; SPTR: Novel protein similar to vertebrate glutamate receptor, ionotropic, N-methyl D-aspartate 2D (GRIN2D)
YP_004053512.1	KEGG: clj:CLJU_c09730 glycosyltransferase; SPTR: uncharacterized protein
YP_004053513.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915: IPR011343; KEGG: tsi:TSIB_1148 probable deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_004053514.1	InterPro IPR001478: IPR001969; KEGG: phe:Phep_0001 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: uncharacterized protein; PFAM: Retroviral aspartyl protease; PDZ domain (Also known as DHR or GLGF)
YP_004053515.1	KEGG: mmb:Mmol_0128 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SPTR: uncharacterized protein
YP_004053516.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_5369 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; Protein of unknown function (DUF2867)
YP_004053517.1	KEGG: zpr:ZPR_2650 glycosyltransferase-distantly-related protein; SPTR: Glycosyltransferase-distantly-related protein; TIGRFAM: conserved hypothetical protein
YP_004053518.1	KEGG: ddi:DDB_G0294290 xeroderma pigmentosum group G family protein; SPTR: Xeroderma pigmentosum group G family protein
YP_004053519.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: cpi:Cpin_0780 sulphate transporter; PFAM: sulphate transporter; SPTR: Sulphate transporter; PFAM: Sulfate transporter family
YP_004053520.1	COGs: COG0288 Carbonic anhydrase; InterPro IPR001765: IPR015892; KEGG: lbl:LBL_2497 bifunctional permease/carbonic anhydrase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Bifunctional permease/carbonic anhydrase; PFAM: Carbonic anhydrase
YP_004053521.1	COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: chu:CHU_1928 L-isoaspartyl protein carboxyl methyltransferase (protein-L-isoaspartate(D-aspartate) O-methyltransferase); PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004053522.1	COGs: COG3186 Phenylalanine-4-hydroxylase; InterPro IPR019774: IPR018301; KEGG: sli:Slin_6319 phenylalanine-4-hydroxylase; PFAM: Aromatic amino acid hydroxylase-like; PRIAM: Phenylalanine 4-monooxygenase; SPTR: Phenylalanine-4-hydroxylase, monomeric form; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form
YP_004053523.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: chu:CHU_1549 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_004053524.1	KEGG: fba:FIC_01220 hypothetical protein; SPTR: uncharacterized protein
YP_004053525.1	COGs: COG3668 Plasmid stabilization system protein; InterPro IPR007712; KEGG: zpr:ZPR_1445 plasmid stabilization system; PFAM: plasmid stabilization system; SPTR: Plasmid stabilization system; PFAM: Plasmid stabilisation system protein
YP_004053526.1	InterPro IPR005360; KEGG: cpb:Cphamn1_1160 addiction module antidote protein, CopG/Arc/MetJ family; SPTR: uncharacterized protein; TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: Uncharacterised protein family (UPF0156); TIGRFAM: addiction module antidote protein, CC2985 family
YP_004053527.1	KEGG: chu:CHU_1548 hypothetical protein; SPTR: uncharacterized protein
YP_004053528.1	COGs: COG3225 ABC transporter involved in gliding motility auxiliary component; InterPro IPR019196: IPR019863; KEGG: dfe:Dfer_3719 gliding motility protein, ABC-related protein; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding motility protein, ABC-related protein; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; PFAM: ABC transporter; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG
YP_004053529.1	InterPro IPR019860; KEGG: dfe:Dfer_4470 ABC transporter permease; gliding motility-associated protein; SPTR: ABC transporter permease; gliding motility-associated protein; TIGRFAM: gliding motility-associated ABC transporter permease GldF; TIGRFAM: gliding motility-associated ABC transporter permease GldF
YP_004053530.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR019864: IPR003593; KEGG: chu:CHU_1545 ABC-type multidrug transporter, ATP-binding protein; gliding motility-associated protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Gliding motility protein; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA; PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA
YP_004053531.1	KEGG: aci:ACIAD2452 hydroxyacylglutathione hydrolase (GloB); SPTR: Hydroxyacylglutathione hydrolase
YP_004053532.1	KEGG: ppl:POSPLDRAFT_91894 hypothetical protein; SPTR: Predicted protein
YP_004053533.1	InterPro IPR008915; KEGG: sli:Slin_2710 peptidase M50; PFAM: peptidase M50; SPTR: Peptidase M50; PFAM: Peptidase family M50
YP_004053534.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR005833: IPR006402; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase
YP_004053535.1	InterPro IPR002502: IPR006619; KEGG: hau:Haur_4245 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SPTR: N-acetylmuramoyl-L-alanine amidase domain protein; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_004053536.1	InterPro IPR003961: IPR003599; KEGG: cch:Cag_1560 VCBS; SMART: Immunoglobulin subtype; Fibronectin type III domain protein; SPTR: Leucine-rich repeat (LRR) protein
YP_004053537.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: chu:CHU_3775 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide repeat domain protein
YP_004053538.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667: IPR003156: IPR004610; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_004053539.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: aas:Aasi_1421 hypothetical protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004053540.1	InterPro IPR004993; KEGG: phe:Phep_3685 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter
YP_004053541.1	KEGG: fjo:Fjoh_2314 hypothetical protein; SPTR: uncharacterized protein
YP_004053542.1	InterPro IPR017936: IPR000866; KEGG: chu:CHU_1976 thiol-disulfide isomerase or thioredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol-disulfide isomerase or thioredoxin; PFAM: AhpC/TSA family
YP_004053543.1	InterPro IPR017936: IPR013740; KEGG: chu:CHU_1975 thioredoxin-like protein; PFAM: Redoxin domain protein; SPTR: Thioredoxin-like protein; PFAM: AhpC/TSA family
YP_004053544.1	KEGG: chu:CHU_3366 hypothetical protein; SPTR: uncharacterized protein
YP_004053545.1	KEGG: chu:CHU_3365 hypothetical protein; SPTR: uncharacterized protein
YP_004053546.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006145: IPR006224: IPR006225; KEGG: aas:Aasi_0665 hypothetical protein; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_004053547.1	KEGG: fjo:Fjoh_2376 hypothetical protein; SPTR: uncharacterized protein
YP_004053548.1	KEGG: fjo:Fjoh_1279 phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase
YP_004053549.1	SPTR: uncharacterized protein
YP_004053550.1	KEGG: chu:CHU_2719 hypothetical protein; SPTR: uncharacterized protein
YP_004053551.1	InterPro IPR016769; KEGG: zpr:ZPR_0959 hydrolase-like protein; SPTR: uncharacterized protein
YP_004053552.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994: IPR001714: IPR002467; KEGG: gfo:GFO_0411 methionine aminopeptidase; PFAM: peptidase M24; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_004053553.1	COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: sli:Slin_6313 GumN family protein; PFAM: GumN family protein; SPTR: uncharacterized protein; PFAM: GumN protein
YP_004053554.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: gfo:GFO_0177 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053555.1	KEGG: gfo:GFO_0178 membrane protein; SPTR: Membrane protein
YP_004053556.1	InterPro IPR004360; KEGG: sme:SMc01145 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase family protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004053557.1	InterPro IPR005242; KEGG: aas:Aasi_0622 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_004053558.1	COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: chu:CHU_3644 condensin subunit ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Condensin subunit ScpA; PFAM: ScpA/B protein
YP_004053559.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR005475: IPR005476: IPR005474: IPR020826: IPR 005477; KEGG: sli:Slin_5566 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_004053560.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cpi:Cpin_6938 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_004053561.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509: IPR008089: IPR005886; KEGG: pdi:BDI_0510 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_004053562.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509: IPR008089; KEGG: fjo:Fjoh_1037 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004053563.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: dfe:Dfer_3001 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004053564.1	InterPro IPR012910: IPR000531; KEGG: pdi:BDI_3481 TonB dependent outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_004053565.1	InterPro IPR000835; KEGG: fba:FIC_01504 possible transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_004053566.1	KEGG: cdl:CDR20291_1513 sodium extrusion ABC transporter, permease protein; SPTR: sodium extrusion ABC transporter,permease protein
YP_004053567.1	InterPro IPR006694; KEGG: sli:Slin_5702 fatty acid hydroxylase; PFAM: fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PFAM: Fatty acid hydroxylase superfamily
YP_004053568.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: phe:Phep_3618 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_004053569.1	COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060: IPR019845; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Phytoene synthetase; PFAM: Squalene/phytoene synthase
YP_004053570.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937: IPR014105; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase
YP_004053571.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053572.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: sli:Slin_5173 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein
YP_004053573.1	KEGG: fps:FP0070 hypothetical protein; SPTR: uncharacterized protein
YP_004053574.1	KEGG: tkm:TK90_0662 hypothetical protein; SPTR: uncharacterized protein
YP_004053575.1	COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR017936: IPR013766: IPR006662: IPR017937: IPR 005746; KEGG: gfo:GFO_3393 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004053576.1	InterPro IPR006121; KEGG: pmm:PMM0131 P-type ATPase transporter for copper; PFAM: Heavy metal transport/detoxification protein; SPTR: uncharacterized protein; PFAM: Heavy-metal-associated domain
YP_004053577.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rbi:RB2501_02165 rhodanese-like domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: uncharacterized protein; PFAM: Rhodanese-like domain
YP_004053578.1	KEGG: tle:Tlet_0056 phenylalanyl-tRNA synthetase subunit beta; SPTR: uncharacterized protein
YP_004053579.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: cat:CA2559_08546 probable aminopeptidase; PFAM: peptidase M28; SPTR: Probable aminopeptidase; PFAM: PA domain; Peptidase family M28
YP_004053580.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: lic:LIC12384 sodium bile acid symporter family protein; PFAM: Bile acid:sodium symporter; SPTR: Sodium bile acid symporter family protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter
YP_004053581.1	KEGG: ath:AT3G05130 hypothetical protein; SPTR: T12H1.9 protein
YP_004053582.1	COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR012135: IPR001295: IPR005719; KEGG: chu:CHU_2701 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2
YP_004053583.1	InterPro IPR006628; KEGG: dfe:Dfer_4775 hypothetical protein; SMART: PUR-alpha/beta/gamma DNA/RNA-binding; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3276)
YP_004053584.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: dfe:Dfer_4773 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004053585.1	COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: phe:Phep_3288 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_004053586.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: cpi:Cpin_4010 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two-component system response regulator protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004053587.1	InterPro IPR000326; KEGG: sli:Slin_2918 phosphoesterase PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: uncharacterized protein; PFAM: PAP2 superfamily
YP_004053588.1	COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260: IPR018375; KEGG: sli:Slin_2294 coproporphyrinogen oxidase; PFAM: coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase
YP_004053589.1	COGs: COG1956 GAF domain-containing protein; KEGG: phe:Phep_2040 GafA; GAF domain-containing protein; SPTR: GAF domain-containing protein involved in signal transduction
YP_004053590.1	COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125: IPR002734: IPR016192: IPR004794; KEGG: chu:CHU_0203 bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; SPTR: Riboflavin biosynthesis protein ribD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_004053591.1	COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848: IPR004556: IPR019874; KEGG: chu:CHU_0202 protoporphyrinogen oxidase; PFAM: methyltransferase small; SPTR: Protoporphyrinogen oxidase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_004053592.1	COGs: COG0628 permease; InterPro IPR002549: IPR000560; KEGG: chu:CHU_2697 transport protein; PFAM: protein of unknown function UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004053593.1	KEGG: gfo:GFO_3614 hypothetical protein; SPTR: uncharacterized protein
YP_004053594.1	KEGG: cat:CA2559_01355 hypothetical protein; SPTR: uncharacterized protein
YP_004053595.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: mmw:Mmwyl1_2379 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: Transporter, putative; PFAM: Domain of unknown function DUF20
YP_004053596.1	COGs: COG4989 oxidoreductase; InterPro IPR001395; KEGG: fba:FIC_01407 oxidoreductase, aldo/keto reductase family protein; PFAM: aldo/keto reductase; SPTR: Oxidoreductase, aldo/keto reductase family protein; PFAM: Aldo/keto reductase family
YP_004053597.1	COGs: COG0486 GTPase; InterPro IPR018948: IPR002917: IPR004520: IPR005225; KEGG: chu:CHU_2030 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: TRNA modification GTPase; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain
YP_004053598.1	InterPro IPR007024; KEGG: mgm:Mmc1_2641 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: BLUF domain protein; SPTR: Activator of photopigment and puc expression; PFAM: Sensors of blue-light using FAD
YP_004053599.1	KEGG: bcl:ABC0578 hypothetical protein; SPTR: uncharacterized protein
YP_004053600.1	KEGG: shi:Shel_11830 hypothetical protein; SPTR: uncharacterized protein
YP_004053601.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469: IPR002470: IPR002471; KEGG: sli:Slin_4504 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Dipeptidyl peptidase IV; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_004053602.1	InterPro IPR002610; KEGG: sli:Slin_5745 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004053603.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: sli:Slin_5744 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl pyrophosphate synthetase (Ggpp synthetase) (Ggps); PFAM: Polyprenyl synthetase
YP_004053604.1	COGs: COG0450 Peroxiredoxin; InterPro IPR017936: IPR000866: IPR019479; KEGG: aas:Aasi_0071 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; SPTR: thioredoxin peroxidase; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004053605.1	COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: hch:HCH_00686 uncharacterized membrane protein; PFAM: MgtC/SapB transporter; SPTR: Uncharacterized membrane protein; PFAM: MgtC family
YP_004053606.1	COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: psl:Psta_4450 peptidyl-arginine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; SPTR: uncharacterized protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_004053607.1	KEGG: pfa:PF11_0207 conserved Plasmodium protein; SPTR: Predicted protein
YP_004053608.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006091: IPR006090: IPR006089; KEGG: slt:Slit_2174 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_004053609.1	KEGG: ncr:NCU09273 hypothetical protein; SPTR: uncharacterized protein
YP_004053610.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pha:PSHAa2154 efflux pump; PFAM: multi antimicrobial extrusion protein MatE; SPTR: efflux pump; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004053611.1	COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR006195: IPR002314: IPR004154: IPR015807: IPR 004516; KEGG: dfe:Dfer_1143 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_004053612.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106: IPR005921; KEGG: fjo:Fjoh_2576 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase
YP_004053613.1	KEGG: chu:CHU_2674 hypothetical protein; SPTR: Fibronectin type III domain protein
YP_004053614.1	COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: dfe:Dfer_4005 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein ALPR1_06800; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family
YP_004053615.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_4006 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_004053616.1	KEGG: bha:BH1959 hypothetical protein; SPTR: BH1959 protein
YP_004053617.1	KEGG: rbi:RB2501_06090 hypothetical protein; SPTR: uncharacterized protein
YP_004053618.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: gfo:GFO_1080 secreted beta-lactamase family protein; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004053619.1	KEGG: cho:Chro.70347 hypothetical protein; SPTR: uncharacterized protein
YP_004053620.1	InterPro IPR003961: IPR000209: IPR006162; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Fibronectin type III domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; SMART: Fibronectin type III domain protein; SPTR: Regulatory P domain of the subtilisin-like proprotein convertases and other protease; PFAM: Fibronectin type III domain; Subtilase family
YP_004053621.1	COGs: COG3361 conserved hypothetical protein; KEGG: zpr:ZPR_0371 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (COG2071)
YP_004053622.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: gfo:GFO_2541 secreted amidohydrolase; PFAM: amidohydrolase; SPTR: Secreted amidohydrolase; PFAM: Amidohydrolase family
YP_004053623.1	COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: sli:Slin_0995 hypothetical protein; PFAM: protein of unknown function DUF165; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein
YP_004053624.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; InterPro IPR013471; KEGG: chu:CHU_1914 ribonuclease Z; SPTR: Ribonuclease Z; TIGRFAM: ribonuclease Z; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z
YP_004053625.1	InterPro IPR002645; KEGG: chu:CHU_1913 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004053626.1	COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636: IPR018236; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004053627.1	KEGG: cpi:Cpin_6557 hypothetical protein; SPTR: acetyltransferase
YP_004053628.1	COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518: IPR018223; KEGG: cpi:Cpin_6556 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_004053629.1	COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000534: IPR012280: IPR000706; KEGG: chu:CHU_3081 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_004053630.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130: IPR002082: IPR006132: IPR006131; KEGG: cpi:Cpin_6553 N-acetylornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YP_004053631.1	COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048: IPR011148: IPR004662; KEGG: pdi:BDI_0488 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_004053632.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650: IPR001261; KEGG: chu:CHU_3087 acetylornithine deacetylase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Acetylornithine deacetylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase
YP_004053633.1	COGs: COG0165 Argininosuccinate lyase; InterPro IPR003031: IPR000362: IPR020557: IPR009049; KEGG: chu:CHU_3088 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_004053634.1	COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR006662: IPR013766: IPR017937: IPR017936: IPR 005746; KEGG: chu:CHU_0093 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004053635.1	KEGG: gfo:GFO_1241 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3347)
YP_004053636.1	KEGG: rbi:RB2501_04650 hypothetical protein; SPTR: Uncharacterized conserved secreted or membrane protein
YP_004053637.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841: IPR002293; KEGG: rbi:RB2501_04725 amino acid transporter; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region protein; PFAM: Amino acid permease; TC 2.A.3
YP_004053638.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: gfo:GFO_2949 HlyD family secretion protein; SPTR: metal transport-related, exported protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Protein of unknown function (DUF3347); TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053639.1	InterPro IPR012657; KEGG: rbi:RB2501_06420 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004053640.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: nve:NEMVE_v1g225776 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein
YP_004053641.1	COGs: COG3696 silver efflux pump; InterPro IPR001036; KEGG: gfo:GFO_1328 AcrB/AcrD/AcrF family membrane transporter; PFAM: acriflavin resistance protein; SPTR: copper/silver resistance-related transport membrane protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004053642.1	KEGG: cat:CA2559_11763 hypothetical protein; SPTR: uncharacterized protein
YP_004053643.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866: IPR017936; KEGG: tra:Trad_0184 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family
YP_004053644.1	COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: pdi:BDI_1187 hypothetical protein; SPTR: uncharacterized protein
YP_004053645.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212: IPR014016: IPR014017; KEGG: pdi:BDI_2571 ATP-dependent helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase domain protein; PFAM: UvrD/REP helicase
YP_004053647.1	COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: aas:Aasi_0164 hypothetical protein; PFAM: protein of unknown function DUF502; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF502)
YP_004053648.1	COGs: COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrE; InterPro IPR003667: IPR010967; KEGG: zpr:ZPR_0952 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: RnfA-Nqr electron transport subunit; SPTR: NADH:ubiquinone oxidoreductase, Na translocating, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit
YP_004053649.1	COGs: COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrD; InterPro IPR003667: IPR011292; KEGG: zpr:ZPR_0951 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: RnfA-Nqr electron transport subunit; SPTR: NADH-ubiquinone oxidoreductase; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
YP_004053650.1	COGs: COG2869 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrC; InterPro IPR007329: IPR010204; KEGG: zpr:ZPR_0950 Na(+)-translocating NADH-quinone reductase subunit C; PFAM: FMN-binding domain protein; SPTR: Na(+)-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
YP_004053651.1	COGs: COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrB; InterPro IPR004338: IPR010966; KEGG: gfo:GFO_0401 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NQR2 and RnfD family protein; SPTR: Na(+)-translocating NADH-quinone reductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit
YP_004053652.1	COGs: COG1726 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrA; InterPro IPR008703; KEGG: coc:Coch_0043 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A; SPTR: Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit A; PFAM: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); NQRA C-terminal domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit
YP_004053653.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: chu:CHU_0087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_004053654.1	COGs: COG0283 Cytidylate kinase; InterPro IPR011994: IPR003136; KEGG: chu:CHU_0086 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_004053655.1	KEGG: zpr:ZPR_4484 membrane protein; SPTR: Membrane protein
YP_004053656.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: chu:CHU_1917 outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: uncharacterized protein; PFAM: Surface antigen variable number repeat; Surface antigen
YP_004053657.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: aas:Aasi_1647 hypothetical protein; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: RNA methyltransferase, TrmH family protein; PFAM: SpoU rRNA Methylase family
YP_004053658.1	KEGG: api:100165062 similar to predicted protein; SPTR: Antifreeze protein
YP_004053659.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_5669 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004053660.1	KEGG: cpi:Cpin_7226 hypothetical protein; SPTR: uncharacterized protein
YP_004053661.1	KEGG: sru:SRU_2321 hypothetical protein; SPTR: uncharacterized protein
YP_004053662.1	InterPro IPR003737; KEGG: cyc:PCC7424_3789 LmbE family protein; PFAM: LmbE family protein; SPTR: uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase
YP_004053663.1	COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: chu:CHU_0987 protein kinase; PFAM: ABC-1 domain-containing protein; SPTR: ABC1 family protein; PFAM: ABC1 family
YP_004053664.1	KEGG: sli:Slin_1923 hypothetical protein; SPTR: uncharacterized protein
YP_004053665.1	COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: sli:Slin_4155 beta-aspartyl-peptidase; PFAM: peptidase T2 asparaginase 2; SPTR: Beta-aspartyl-peptidase; PFAM: Asparaginase
YP_004053666.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR003663: IPR005829; KEGG: gfo:GFO_0008 major facilitator superfamily permease sugar transporter; SPTR: Xylose transporter; TIGRFAM: sugar transporter; PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_004053667.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583: IPR017932; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; PFAM: Glutamine amidotransferases class-II
YP_004053668.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003594: IPR005467; KEGG: fjo:Fjoh_1956 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Tetratricopeptide repeat domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004053669.1	COGs: COG0796 Glutamate racemase; InterPro IPR015942: IPR018187: IPR004391; KEGG: dfe:Dfer_3460 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase
YP_004053670.1	KEGG: zpr:ZPR_2890 hypothetical protein; SPTR: uncharacterized protein
YP_004053671.1	COGs: COG0316 conserved hypothetical protein; InterPro IPR000361: IPR017870: IPR016092; KEGG: chu:CHU_2522 scaffold protein for iron-sulphur cluster assembly; PFAM: HesB/YadR/YfhF-family protein; SPTR: Scaffold protein for iron-sulphur cluster assembly; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_004053672.1	KEGG: sak:SAK_1025 acetyltransferase; SPTR: uncharacterized protein
YP_004053673.1	InterPro IPR004360: IPR017515; KEGG: sli:Slin_5823 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_004053674.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728: IPR006283; KEGG: chu:CHU_2521 thiamine-phosphate kinase (thiamin-monophosphate kinase); PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_004053675.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: dfe:Dfer_2424 maf protein; PFAM: Maf family protein; SPTR: Maf protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_004053676.1	COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: cpb:Cphamn1_0121 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1015)
YP_004053677.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR001917; KEGG: chu:CHU_1310 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase); PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II
YP_004053678.1	KEGG: chu:CHU_1311 hypothetical protein; SPTR: Histone H1-like protein
YP_004053679.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176: IPR004839; KEGG: dar:Daro_3334 aminotransferase; PFAM: aminotransferase class I and II; SPTR: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: Aminotransferase class I and II
YP_004053680.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sli:Slin_5432 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase
YP_004053681.1	COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782: IPR002160; KEGG: rbi:RB2501_12547 adhesion lipoprotein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: adhesion lipoprotein; PFAM: Fasciclin domain
YP_004053682.1	InterPro IPR013517: IPR000834; KEGG: sli:Slin_4333 FG-GAP repeat protein; PFAM: FG-GAP repeat protein; SPTR: FG-GAP repeat protein
YP_004053683.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713: IPR013221: IPR004101: IPR005863; KEGG: chu:CHU_0699 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_004053684.1	KEGG: dfe:Dfer_3373 oxidoreductase; SPTR: Oxidoreductase
YP_004053685.1	KEGG: chu:CHU_0208 hypothetical protein; SPTR: uncharacterized protein
YP_004053686.1	KEGG: fba:FIC_00575 hypothetical protein; SPTR: uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_004053687.1	KEGG: fba:FIC_00575 hypothetical protein; SPTR: uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_004053688.1	COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR013027; KEGG: mxa:MXAN_5165 GMC oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: GMC oxidoreductase
YP_004053689.1	InterPro IPR001589; KEGG: jan:Jann_0144 spheroidene monooxygenase; SPTR: Spheroidene monooxygenase
YP_004053690.1	KEGG: gfo:GFO_1814 hypothetical protein; SPTR: uncharacterized protein
YP_004053691.1	COGs: COG1164 Oligoendopeptidase F; InterPro IPR001567: IPR011976; KEGG: dfe:Dfer_3532 oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: oligoendopeptidase, M3 family; PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family
YP_004053693.1	COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterProIPR001834: IPR001709: IPR008333: IPR001433: IPR 001041: IPR006058: IPR017927; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; SPTR: PaaE; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: ferredoxin [2Fe-2S]
YP_004053694.1	InterPro IPR000209; KEGG: sli:Slin_5896 hypothetical protein; SPTR: uncharacterized protein
YP_004053695.1	KEGG: fsu:Fisuc_1324 hypothetical protein; SPTR: Cellulose-binding protein
YP_004053696.1	KEGG: phe:Phep_1860 hypothetical protein; SPTR: uncharacterized protein
YP_004053697.1	KEGG: chu:CHU_0933 hypothetical protein; SPTR: uncharacterized protein
YP_004053698.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR000073: IPR003718; KEGG: gfo:GFO_1021 OsmC-like protein; PFAM: OsmC family protein; alpha/beta hydrolase fold; SPTR: Hydrolases of the alpha/beta superfamily; PFAM: Prolyl oligopeptidase family; OsmC-like protein
YP_004053699.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: rbi:RB2501_07330 sodium/glucose cotransporter; PFAM: Na+/solute symporter; SPTR: Transporter, SSS family, putative; PFAM: Sodium:solute symporter family
YP_004053700.1	COGs: COG4323 membrane protein; KEGG: abo:ABO_0810 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF962)
YP_004053701.1	KEGG: rpr:RP566 hypothetical protein; SPTR: uncharacterized protein
YP_004053702.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: chu:CHU_3569 membrane protease subunit; PFAM: hypothetical protein; SMART: hypothetical protein; SPTR: Spfh domain / band 7 family, putative; PFAM: SPFH domain / Band 7 family
YP_004053703.1	COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: sli:Slin_5386 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_004053704.1	COGs: COG2503 secreted acid phosphatase; InterPro IPR005519: IPR006423; KEGG: btk:BT9727_4246 acid phosphatase; PFAM: acid phosphatase (Class B); SPTR: uncharacterized protein; TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: HAD superfamily, subfamily IIIB (Acid phosphatase); TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family
YP_004053705.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR001638: IPR003661: IPR003594: IPR 005467; KEGG: cts:Ctha_0870 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; SMART: ATPase ATP-binding protein; extracellular solute-binding protein family 3; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3
YP_004053706.1	InterPro IPR003018; KEGG: dae:Dtox_3786 GAF sensor hybrid histidine kinase; SMART: GAF domain protein; SPTR: GAF domain protein
YP_004053707.1	KEGG: fjo:Fjoh_2938 hypothetical protein; SPTR: uncharacterized protein
YP_004053708.1	InterPro IPR003489; KEGG: chu:CHU_3399 ribosomal subunit interface protein; SPTR: uncharacterized protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_004053709.1	KEGG: tga:TGAM_2065 nucleotidyltransferase, putative; SPTR: Nucleotidyltransferase, putative
YP_004053710.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dfe:Dfer_4578 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulation protein; PFAM: Ferric uptake regulator family
YP_004053711.1	COGs: COG2217 Cation transport ATPase; InterProIPR001757: IPR008250: IPR005834: IPR018303: IPR 006121; KEGG: chu:CHU_1133 Cu(I)-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Cation transport ATPase, E1-E2 family protein; PFAM: E1-E2 ATPase; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004053712.1	InterPro IPR004714; KEGG: fps:FP1154 cytochrome cbb3 oxidase maturation protein CcoS; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, Cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type
YP_004053713.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883: IPR003468: IPR009056: IPR004677; KEGG: sli:Slin_3562 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Probable cytochrome oxidase subunit (Cbb3-type); TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I
YP_004053714.1	KEGG: rbi:RB2501_04160 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cbb3-type cytochrome oxidase component FixQ
YP_004053715.1	InterPro IPR008168: IPR003088: IPR009056; KEGG: zpr:ZPR_2303 cbb3-type cytochrome c oxidase subunit III; PFAM: cytochrome c class I; SPTR: Cytochrome-c oxidase fixP chain; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III
YP_004053716.1	COGs: COG0348 Polyferredoxin; InterPro IPR017900: IPR017896: IPR014116; KEGG: gfo:GFO_1436 FixG-like iron-sulfur-cluster-binding protein; SPTR: Iron-sulfur cluster-binding protein; TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG
YP_004053717.1	KEGG: cpi:Cpin_0685 FixH family protein; SPTR: uncharacterized protein; PFAM: FixH
YP_004053718.1	COGs: COG2836 conserved hypothetical protein; KEGG: fba:FIC_00141 heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis CycZ-like domain, possible membrane copper tolerance protein; SPTR: uncharacterized protein
YP_004053719.1	COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006222: IPR013977: IPR006223; KEGG: fjo:Fjoh_2562 glycine cleavage system aminomethyltransferase T; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; SPTR: Aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein
YP_004053720.1	COGs: COG0308 Aminopeptidase N; InterPro IPR018247; KEGG: smt:Smal_1028 hypothetical protein; SPTR: uncharacterized protein; PFAM: Peptidase family M1
YP_004053721.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: rce:RC1_1686 ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004053722.1	KEGG: cpi:Cpin_0367 hypothetical protein; SPTR: uncharacterized protein
YP_004053723.1	COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR002202; KEGG: vfm:VFMJ11_A0972 hydroxymethylglutaryl-coenzyme A reductase; PFAM: hydroxymethylglutaryl-coenzyme A reductase; PRIAM: Hydroxymethylglutaryl-CoA reductase (NADPH); SPTR: Hydroxymethylglutaryl-CoA reductase (NADPH); PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP)
YP_004053724.1	KEGG: str:Sterm_1948 UbiA prenyltransferase; SPTR: Membrane protein, putative; PFAM: UbiA prenyltransferase family
YP_004053725.1	COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192: IPR008279; KEGG: str:Sterm_1949 pyruvate phosphate dikinase PEP/pyruvate-binding protein; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; SPTR: Phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YP_004053726.1	COGs: COG5379 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; KEGG: str:Sterm_1950 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase-like protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3419)
YP_004053727.1	InterPro IPR000374; KEGG: str:Sterm_1951 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_004053728.1	KEGG: str:Sterm_1952 GCN5-related N-acetyltransferase; SPTR: uncharacterized protein
YP_004053729.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873: IPR017871: IPR020845; KEGG: str:Sterm_1953 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-ligase; PFAM: AMP-binding enzyme
YP_004053730.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR001036: IPR003392: IPR000731; KEGG: ant:Arnit_2220 RND efflux transporter; PFAM: Patched family protein; SPTR: exporter protein; PFAM: MMPL family
YP_004053732.1	COGs: COG1171 Threonine dehydratase; InterPro IPR001926: IPR001721: IPR011820; KEGG: gfo:GFO_2109 threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein; SPTR: Threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase
YP_004053733.1	COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013116: IPR000506: IPR013023; KEGG: dfe:Dfer_3679 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_004053734.1	COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912: IPR019455: IPR004789; KEGG: fps:FP0447 acetolactate synthase small subunit; PFAM: amino acid-binding ACT domain protein; Acetolactate synthase, small subunit-like; SPTR: Acetohydroxyacid synthase small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit
YP_004053735.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR012001: IPR012000: IPR011766: IPR000399: IPR 012846; KEGG: zpr:ZPR_2802 acetolactate synthase large subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; SPTR: Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_004053736.1	COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581: IPR020558: IPR004404; KEGG: rbi:RB2501_14414 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_004053737.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544: IPR018300: IPR005785; KEGG: phe:Phep_3417 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I
YP_004053739.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804: IPR019818: IPR004429; KEGG: chu:CHU_3744 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_004053740.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573: IPR004431; KEGG: cpi:Cpin_1984 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_004053741.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030: IPR018136: IPR004430; KEGG: cpi:Cpin_1982 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_004053742.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891: IPR002034; KEGG: rbi:RB2501_15799 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; SPTR: 2-isopropylmalate synthase 1; PFAM: HMGL-like
YP_004053743.1	KEGG: chu:CHU_3473 hypothetical protein; SPTR: uncharacterized protein
YP_004053744.1	KEGG: cel:C17E7.2 Serpentine Receptor, class H; SPTR: uncharacterized protein
YP_004053745.1	COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: cpi:Cpin_3273 sec-independent protein translocase protein TatC; PFAM: globin; SPTR: Sec-independent protein translocase protein TatC; PFAM: Bacterial-like globin
YP_004053746.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197: IPR010723: IPR006638: IPR004558; KEGG: fps:FP1163 coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase HemN; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase
YP_004053747.1	KEGG: bha:BH1959 hypothetical protein; SPTR: uncharacterized protein
YP_004053748.1	COGs: COG0217 conserved hypothetical protein; InterPro IPR002876; KEGG: wsu:WS1016 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: UPF0082 protein WS1016; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_004053749.1	COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: cya:CYA_0079 fasciclin domain-containing protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: Fasciclin domain protein; PFAM: Fasciclin domain
YP_004053750.1	KEGG: fjo:Fjoh_1859 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF983)
YP_004053751.1	KEGG: rno:687472 hypothetical protein LOC687472; SPTR: Smooth muscle caldesmon, putative
YP_004053752.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804: IPR019818: IPR014273; KEGG: lbl:LBL_0271 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase
YP_004053753.1	KEGG: sbi:SORBI_03g009600 hypothetical protein; SPTR: uncharacterized protein
YP_004053754.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR008089: IPR001509: IPR020904; KEGG: hmg:100202205 similar to UDP-glucuronate decarboxylase 1; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase family protein; PFAM: NAD dependent epimerase/dehydratase family
YP_004053755.1	InterPro IPR004993; KEGG: cat:CA2559_12318 hypothetical protein; PFAM: GH3 auxin-responsive promoter; SPTR: uncharacterized protein; PFAM: GH3 auxin-responsive promoter
YP_004053756.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR000150: IPR006379; KEGG: gfo:GFO_2353 haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: uncharacterized protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_004053757.1	InterPro IPR004027; KEGG: ssa:SSA_0543 preprotein translocase subunit SecA; PFAM: SEC-C motif domain protein; SPTR: uncharacterized protein; PFAM: SEC-C motif
YP_004053758.1	KEGG: sli:Slin_5297 hypothetical protein; SPTR: uncharacterized protein
YP_004053759.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: sli:Slin_0650 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_004053760.1	COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: drm:Dred_1529 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Ferric iron uptake ABC transporter (FeT) family, substrate binding protein; PFAM: Bacterial extracellular solute-binding protein
YP_004053761.1	COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: tkm:TK90_0298 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Iron utilization protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004053762.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR013611: IPR003593: IPR017871; KEGG: bha:BH0512 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: ATPase AAA; SPTR: MsmX; PFAM: ABC transporter; TOBE domain
YP_004053763.1	KEGG: gfo:GFO_0481 hypothetical protein; SPTR: uncharacterized protein
YP_004053764.1	KEGG: cat:CA2559_10578 hypothetical protein; SPTR: uncharacterized protein
YP_004053765.1	InterPro IPR019115; KEGG: cat:CA2559_10573 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_004053766.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: cpi:Cpin_0694 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: two component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004053767.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867: IPR005829; KEGG: cpi:Cpin_0693 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: DNA-binding response regulator RprY; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004053768.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR001958: IPR011701; KEGG: cpi:Cpin_0805 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator family transporter, putative; PFAM: PUCC protein; Major Facilitator Superfamily
YP_004053769.1	InterPro IPR018914; KEGG: chu:CHU_0100 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2480)
YP_004053770.1	COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: chu:CHU_0099 M22 family peptidase; PFAM: peptidase M22 glycoprotease; SPTR: Probable peptidase M22, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ
YP_004053771.1	COGs: COG0730 permease; InterPro IPR002781; KEGG: mvn:Mevan_0247 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004053772.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151: IPR004447; KEGG: dfe:Dfer_3850 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004053773.1	InterPro IPR000100; KEGG: pdi:BDI_3055 ribonuclease P; SPTR: Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_004053774.1	InterPro IPR000271: IPR020939; KEGG: sli:Slin_3921 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_004053775.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963: IPR001478; KEGG: dfe:Dfer_4157 peptidase M61 domain protein; PFAM: peptidase M61 domain protein; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase
YP_004053776.1	COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: coc:Coch_1396 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: Peptidase M48 Ste24p; PFAM: Peptidase family M48
YP_004053777.1	KEGG: coc:Coch_1397 hypothetical protein; SPTR: Membrane protein; PFAM: Chloroplast import component protein (Tic20)
YP_004053778.1	KEGG: mbt:JTY_1909 transmembrane protein; SPTR: POSSIBLE TRANSMEMBRANE PROTEIN
YP_004053779.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090: IPR006089; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004053780.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterProIPR020616: IPR020617: IPR020615: IPR020610: IPR 020613: IPR002155; KEGG: sli:Slin_5109 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004053781.1	KEGG: fjo:Fjoh_4923 S23 ribosomal protein; SPTR: S23 ribosomal; manually curated; PFAM: S23 ribosomal protein
YP_004053782.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108: IPR001753; KEGG: chu:CHU_3591 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004053783.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835: IPR000792; KEGG: sli:Slin_4426 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: MarR family protein; PFAM: MarR family
YP_004053784.1	KEGG: cat:CA2559_08761 adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase
YP_004053785.1	COGs: COG4242 Cyanophycinase and related exopeptidase; KEGG: sus:Acid_6598 cyanophycinase and related exopeptidase-like protein; SPTR: Cyanophycinase and related exopeptidase-like protein; PFAM: Peptidase family S51
YP_004053786.1	COGs: COG2871 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF; InterProIPR001709: IPR001041: IPR001433: IPR017927: IPR 010205; KEGG: zpr:ZPR_0953 Na(+)-translocating NADH-quinone reductase subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; SPTR: Na(+)-translocating NADH-quinone reductase subunit F; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
YP_004053787.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: sli:Slin_4391 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004053788.1	KEGG: chu:CHU_3613 hypothetical protein; SPTR: uncharacterized protein
YP_004053789.1	COGs: COG0777 Acetyl-CoA carboxylase beta subunit; InterPro IPR000438: IPR000022: IPR011762; KEGG: aas:Aasi_1431 hypothetical protein; PFAM: carboxyl transferase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_004053790.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: gsu:GSU2698 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004053791.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747; KEGG: fjo:Fjoh_0446 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004053792.1	KEGG: pfa:PF11_0207 conserved Plasmodium protein; SPTR: uncharacterized protein
YP_004053793.1	COGs: COG1160 GTPase; InterPro IPR006073: IPR002917: IPR016484: IPR005225; KEGG: sli:Slin_5226 ribosome-associated GTPase EngA; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_004053794.1	InterPro IPR012657; KEGG: cpi:Cpin_3673 hypothetical protein; SPTR: Conserved protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004053795.1	COGs: COG1159 GTPase; InterProIPR001806: IPR002917: IPR004044: IPR005225: IPR 005662; KEGG: sli:Slin_5225 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_004053796.1	InterPro IPR000305; KEGG: zpr:ZPR_3498 protein containing GIY-YIG catalytic domain; PFAM: Excinuclease ABC C subunit domain protein; SPTR: uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_004053797.1	KEGG: svo:SVI_1758 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1772)
YP_004053798.1	InterPro IPR002913; KEGG: xac:XAC0537 hypothetical protein; SPTR: uncharacterized protein; PFAM: START domain
YP_004053799.1	KEGG: dal:Dalk_3046 hypothetical protein; SPTR: uncharacterized protein
YP_004053800.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ava:Ava_1692 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_004053801.1	COGs: COG1295 membrane protein; InterPro IPR004664: IPR017039; KEGG: sli:Slin_1616 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_004053802.1	COGs: COG0824 thioesterase; InterPro IPR006683: IPR006684; KEGG: sli:Slin_1617 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004053803.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: sli:Slin_1618 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_004053804.1	COGs: COG0009 translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: phe:Phep_3021 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004053805.1	InterPro IPR014985; KEGG: sli:Slin_1369 WbqC-like family protein; PFAM: WbqC-like family protein; SPTR: WbqC-like family protein; PFAM: WbqC-like protein family
YP_004053806.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR001270: IPR004176: IPR003959: IPR001943: IPR 013093: IPR019489: IPR003593: IPR018368; KEGG: chu:CHU_1079 ATP-dependent Clp protease, ATP-binding subunit; PFAM: ATPase AAA-2 domain protein; Clp domain protein; ATPase AAA; UvrB/UvrC protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: ATPase; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif
YP_004053807.1	KEGG: ptm:GSPATT00019611001 hypothetical protein; SPTR: Chromosome undetermined scaffold_61, whole genome shotgun sequence
YP_004053808.1	COGs: COG1522 Transcriptional regulators; InterPro IPR000485: IPR019887: IPR019888; KEGG: dfe:Dfer_5148 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: Bacterial regulatory protein, arsR family; AsnC family
YP_004053809.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: zpr:ZPR_1664 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_004053810.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439: IPR017871: IPR004602; KEGG: dfe:Dfer_3281 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: UvrABC SOS-repair system protein excinuclease A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004053811.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: lil:LA_3127 sodium bile acid symporter family protein; PFAM: Bile acid:sodium symporter; SPTR: Sodium bile acid symporter family protein; PFAM: Sodium Bile acid symporter family
YP_004053812.1	COGs: COG3696 silver efflux pump; InterPro IPR001036: IPR004763; KEGG: gfo:GFO_1306 heavy metal cation efflux protein CzcA; PFAM: acriflavin resistance protein; SPTR: Heavy metal cation efflux protein CzcA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004053813.1	InterPro IPR012657; KEGG: gur:Gura_1699 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004053814.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR000089: IPR006143; KEGG: rbi:RB2501_01101 secretion protein HlyD; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053815.1	KEGG: rbi:RB2501_01106 hypothetical protein; SPTR: uncharacterized protein
YP_004053816.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: rbi:RB2501_01111 puter membrane protein; PFAM: outer membrane efflux protein; SPTR: puter membrane protein; PFAM: Outer membrane efflux protein
YP_004053817.1	KEGG: rbi:RB2501_01116 hypothetical protein; SPTR: uncharacterized protein
YP_004053818.1	KEGG: dfe:Dfer_2478 hypothetical protein; SPTR: uncharacterized protein
YP_004053819.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR005483: IPR005481: IPR005479: IPR005480: IPR 011761: IPR006275; KEGG: chu:CHU_3278 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; SPTR: Carbamoyl-phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_004053820.1	InterPro IPR013217; KEGG: dfe:Dfer_2850 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 12; PFAM: Methyltransferase domain
YP_004053821.1	KEGG: lic:LIC12672 hypothetical protein; SPTR: uncharacterized protein; PFAM: UbiA prenyltransferase family
YP_004053822.1	COGs: COG0335 Ribosomal protein L19; InterPro IPR001857: IPR018257; KEGG: chu:CHU_0120 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_004053823.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR016009: IPR002649; KEGG: dfe:Dfer_2580 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_004053824.1	COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR002676: IPR007903: IPR011961; KEGG: dfe:Dfer_2581 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_004053825.1	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307: IPR020592; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_004053826.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358: IPR011110: IPR011123: IPR003661: IPR 003594: IPR005467; KEGG: sli:Slin_0921 histidine kinase; PFAM: ATPase ATP-binding protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Hybrid sensor, putative; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; His Kinase A (phosphoacceptor) domain
YP_004053827.1	COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017: IPR005475: IPR011603; KEGG: chu:CHU_3362 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; SPTR: Alpha-ketoglutarate decarboxylase; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component
YP_004053828.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR000089: IPR004167: IPR001078: IPR003016: IPR 006255; KEGG: dfe:Dfer_5753 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
YP_004053829.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR013027: IPR000815: IPR004099: IPR012999: IPR 006258; KEGG: sli:Slin_6035 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_004053830.1	KEGG: zpr:ZPR_1942 Fe-S-cluster oxidoreductase; SPTR: Fe-S-cluster oxidoreductase; PFAM: Uncharacterised protein family (UPF0153)
YP_004053831.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: sli:Slin_5951 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004053832.1	KEGG: chu:CHU_3238 hypothetical protein; SPTR: uncharacterized protein
YP_004053833.1	InterPro IPR016160; KEGG: chu:CHU_3237 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25
YP_004053834.1	COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462; KEGG: phe:Phep_3071 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR:CDP-diacylglycerol-serine-O-phosphatidyltransf erase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_004053835.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: chu:CHU_3235 metallo-beta-lactamase family protein; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_004053836.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase, putative; PFAM: FAD dependent oxidoreductase
YP_004053837.1	InterPro IPR011659; KEGG: chu:CHU_3233 WD-40-like repeat-containing protein; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: WD40-like Beta Propeller Repeat
YP_004053838.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527: IPR013551: IPR005229; KEGG: phe:Phep_4196 hypothetical protein; PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; SPTR: uncharacterized protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_004053839.1	KEGG: phe:Phep_3467 hypothetical protein; SPTR: uncharacterized protein
YP_004053840.1	KEGG: cpi:Cpin_1879 hypothetical protein; SPTR: uncharacterized protein
YP_004053841.1	COGs: COG0308 Aminopeptidase N; KEGG: cpi:Cpin_1880 aminopeptidase; SPTR: Zn-dependent aminopeptidase
YP_004053842.1	KEGG: nmg:Nmag_3075 hypothetical protein; SPTR: uncharacterized protein
YP_004053843.1	COGs: COG4892 heme/steroid binding protein; InterPro IPR001199; KEGG: dfe:Dfer_3563 cytochrome b5; PFAM: cytochrome b5; SPTR: uncharacterized protein; PFAM: Cytochrome b5-like Heme/Steroid binding domain
YP_004053844.1	COGs: COG1283 Na+/phosphate symporter; InterPro IPR003841; KEGG: cyp:PCC8801_1509 Na+/Picotransporter; PFAM: Na+/Picotransporter; SPTR: NptA protein; PFAM: Na+/Pi-cotransporter
YP_004053845.1	KEGG: cts:Ctha_1384 hypothetical protein; SPTR: uncharacterized protein
YP_004053846.1	KEGG: pbe:PB500035.00.0 BIR protein; SPTR: BIR protein, putative
YP_004053847.1	KEGG: enc:ECL_00196 hypothetical protein; SPTR: uncharacterized protein
YP_004053848.1	COGs: COG2337 Growth inhibitor; InterPro IPR003477; KEGG: lbl:LBL_2675 proteic killer gene system protein, growth inhibitor; PFAM: PemK family protein; SPTR: PemK family protein; PFAM: PemK-like protein
YP_004053849.1	KEGG: zpr:ZPR_0704 transcriptional regulator/antitoxin, MazE; SPTR: Transcriptional regulator/antitoxin, MazE
YP_004053850.1	KEGG: sca:Sca_0323 hypothetical protein; SPTR: membrane protein
YP_004053851.1	KEGG: tfu:Tfu_0363 hypothetical protein; SPTR: uncharacterized protein
YP_004053852.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR011650: IPR017439: IPR010168; KEGG: chu:CHU_0130 N-acyl-L-amino acid amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: N-acyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_004053853.1	InterPro IPR007730; KEGG: dfe:Dfer_3955 sporulation domain protein; PFAM: Sporulation domain-containing protein; SPTR: Sporulation domain protein; PFAM: Sporulation related domain
YP_004053854.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR011115: IPR011130: IPR001650: IPR011116: IPR 020937: IPR014018: IPR000185; KEGG: chu:CHU_0128 preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SPTR: Translocase; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_004053855.1	COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: cat:CA2559_12773 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_004053856.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family
YP_004053857.1	InterPro IPR019057; KEGG: swp:swp_0009 type II restriction enzyme eco47ii; PFAM: Restriction endonuclease, type II, Eco47II; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II site-specific deoxyribonuclease (Sau96I-li); PFAM: Eco47II restriction endonuclease
YP_004053858.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: gfo:GFO_2532 V-type sodium ATP synthase subunit J; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: V-type sodium ATP synthase subunit J; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_004053859.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: gfo:GFO_2532 V-type sodium ATP synthase subunit J; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: V-type sodium ATP synthase subunit J; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_004053860.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611: IPR002173; KEGG: dfe:Dfer_4000 PfkB domain protein; PFAM: PfkB domain protein; SPTR: PfkB domain protein; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I
YP_004053861.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176: IPR004839: IPR004838; KEGG: rbi:RB2501_02675 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_004053863.1	KEGG: chu:CHU_3300 hypothetical protein; SPTR: uncharacterized protein
YP_004053864.1	COGs: COG3491 Isopenicillin N synthase and related dioxygenase; InterPro IPR005123; KEGG: dfe:Dfer_2706 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Oxidoreductase; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_004053865.1	COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370: IPR014047; KEGG: sli:Slin_1603 chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; SPTR: Chromate transport protein; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family
YP_004053866.1	KEGG: coc:Coch_0513 conserved hypothetical protein, secreted; SPTR: uncharacterized protein
YP_004053867.1	COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; PFAM: LD-carboxypeptidase
YP_004053868.1	InterPro IPR005632; KEGG: chu:CHU_3414 OmpH family outer membrane protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein (OmpH-like); PFAM: Outer membrane protein (OmpH-like)
YP_004053869.1	InterPro IPR005632; KEGG: chu:CHU_3413 OmpH family outer membrane protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein, ompH family; PFAM: Outer membrane protein (OmpH-like)
YP_004053870.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184: IPR016474; KEGG: sli:Slin_4434 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: outer membrane protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_004053871.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441: IPR018520; KEGG: sli:Slin_4433 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_004053872.1	KEGG: dfe:Dfer_3621 hypothetical protein; SPTR: uncharacterized protein
YP_004053873.1	KEGG: chu:CHU_3409 hypothetical protein; SPTR: uncharacterized protein
YP_004053874.1	COGs: COG0061 sugar kinase; InterPro IPR002504; KEGG: chu:CHU_3408 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase
YP_004053875.1	InterPro IPR000644; KEGG: chu:CHU_3407 hypothetical protein; PFAM: CBS domain containing protein; SPTR: CBS domain pair protein
YP_004053876.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_0656 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_004053877.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR006220: IPR011702: IPR001317: IPR000991: IPR 017926: IPR006221; KEGG: sli:Slin_0655 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_004053878.1	InterPro IPR003825; KEGG: dfe:Dfer_4730 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein
YP_004053879.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: dfe:Dfer_4729 hypothetical protein; SPTR: uncharacterized protein; PFAM: Yqey-like protein
YP_004053880.1	COGs: COG0854 Pyridoxal phosphate biosynthesis protein; InterPro IPR004569; KEGG: sli:Slin_4990 pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_004053881.1	InterPro IPR002514; KEGG: zpr:ZPR_4701 ISPsy11, transposase OrfA; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_004053882.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: zpr:ZPR_4711 integrase, catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region; PFAM: Integrase core domain
YP_004053883.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639: IPR000073; KEGG: dfe:Dfer_5071 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta superfamily hydrolase; PFAM: alpha/beta hydrolase fold
YP_004053884.1	KEGG: cpi:Cpin_4444 YCII-related; SPTR: uncharacterized protein
YP_004053885.1	COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: dfe:Dfer_5003 protein of unknown function UPF0126; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; PFAM: UPF0126 domain
YP_004053886.1	KEGG: edi:EDI_287650 hypothetical protein; SPTR: uncharacterized protein
YP_004053887.1	COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638: IPR008258: IPR000189; KEGG: cts:Ctha_0374 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3
YP_004053888.1	KEGG: gfo:GFO_1062 membrane protein; SPTR: uncharacterized protein
YP_004053889.1	KEGG: zpr:ZPR_1704 molecular chaperone DnaK; SPTR: Molecular chaperone DnaK
YP_004053890.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: phe:Phep_0707 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Ribosomal large subunit pseudouridine synthase C; PFAM: RNA pseudouridylate synthase
YP_004053891.1	InterPro IPR002514; KEGG: zpr:ZPR_4701 ISPsy11, transposase OrfA; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_004053892.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: zpr:ZPR_4711 integrase, catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region; PFAM: Integrase core domain
YP_004053893.1	COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: bfs:BF0947 hypothetical protein; SMART: PUA domain containing protein; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_004053894.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: coc:Coch_2048 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_004053895.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR002772; KEGG: fjo:Fjoh_3521 glycoside hydrolase family 3 protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Candidate beta-glucosidase; Glycoside hydrolase family 3; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_004053896.1	COGs: COG4099 peptidase; InterPro IPR003140; KEGG: gfo:GFO_0365 alpha/beta fold hydrolase; PFAM: phospholipase/Carboxylesterase; SPTR: uncharacterized protein; PFAM: Phospholipase/Carboxylesterase
YP_004053897.1	COGs: COG5368 conserved hypothetical protein; InterPro IPR016883; KEGG: rbi:RB2501_07305 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2329)
YP_004053898.1	COGs: COG5368 conserved hypothetical protein; KEGG: dfe:Dfer_4453 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2329)
YP_004053899.1	KEGG: gur:Gura_3011 LamG domain-containing protein; SPTR: uncharacterized protein
YP_004053900.1	InterPro IPR012944; KEGG: dfe:Dfer_4455 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_004053901.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bfs:BF4169 TonB-linked outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004053902.1	InterPro IPR011623; KEGG: cpi:Cpin_3587 diverse 7TM receptor transmembrane region; PFAM: Diverse 7TM receptor transmembrane region; SPTR: Chromosome segregation ATPase; intracellular signalling protein; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2
YP_004053903.1	InterPro IPR009056; KEGG: ant:Arnit_1602 hypothetical protein; SPTR: uncharacterized protein
YP_004053904.1	COGs: COG3899 ATPase; InterProIPR017442: IPR003018: IPR010822: IPR002290: IPR 020635: IPR000719; KEGG: lic:LIC12324 serine/threonine kinase protein; PFAM: Serine/threonine-protein kinase-like domain; GAF domain protein; Stage II sporulation protein E; SMART: GAF domain protein; serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine kinase with GAF domain; PFAM: Protein kinase domain; GAF domain; Stage II sporulation protein E (SpoIIE)
YP_004053905.1	KEGG: mjl:Mjls_2384 transglycosylase associated protein; SPTR: transglycosylase associated protein
YP_004053906.1	COGs: COG2514 ring-cleavage extradiol dioxygenase; InterPro IPR004360: IPR018146; KEGG: dfe:Dfer_0290 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004053907.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: cyt:cce_1643 nitroreductase; PFAM: nitroreductase; SPTR: Probable nitroreductase; PFAM: Nitroreductase family
YP_004053908.1	KEGG: fjo:Fjoh_0081 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF83
YP_004053909.1	KEGG: api:100165445 similar to CG4030 CG4030-PA; SPTR: uncharacterized protein
YP_004053910.1	InterPro IPR000788: IPR005144: IPR013509: IPR013346; KEGG: chu:CHU_0451 ribonucleoside diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_004053911.1	COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: aas:Aasi_0535 hypothetical protein; PFAM: ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: uncharacterized protein; PFAM: Ribonucleotide reductase, small chain
YP_004053912.1	KEGG: cla:Cla_1534 hypothetical protein; SPTR: uncharacterized protein
YP_004053913.1	COGs: COG0261 Ribosomal protein L21; InterPro IPR001787: IPR018258; KEGG: phe:Phep_1624 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_004053914.1	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: chu:CHU_0454 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_004053915.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001440: IPR003661: IPR019734: IPR005467: IPR 013026; KEGG: ter:Tery_2811 tetratricopeptide TPR_2; PFAM: histidine kinase A domain protein; hypothetical protein; SPTR: Tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide repeat
YP_004053916.1	KEGG: dfe:Dfer_3079 hypothetical protein; SPTR: uncharacterized protein
YP_004053917.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004820: IPR004821: IPR005248; KEGG: sli:Slin_5549 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_004053918.1	COGs: COG0194 Guanylate kinase; InterPro IPR008144: IPR008145: IPR017665; KEGG: sli:Slin_5548 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_004053919.1	KEGG: chu:CHU_0600 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: anti-sigma factor, TIGR02949 family
YP_004053920.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: chu:CHU_0601 RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004053921.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: str:Sterm_3098 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004053922.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mmq:MmarC5_1307 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004053923.1	InterPro IPR006342; KEGG: sfu:Sfum_3336 hypothetical protein; SPTR: Methyltransferase FkbM; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_004053924.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: maq:Maqu_0791 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004053925.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pru:PRU_2908 group 2 family glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase, group 2 family; PFAM: Glycosyl transferase family 2
YP_004053926.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cat:CA2559_06130 lipopolysaccharide biosynthesis glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_004053927.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR019825: IPR020082: IPR000043: IPR015878; KEGG: zpr:ZPR_4471 S-adenosylhomocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_004053928.1	COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408: IPR004143; KEGG: chu:CHU_0611 biotin--[acetyl-CoA-carboxylase] ligase; PFAM: biotin/lipoate A/B protein ligase; SPTR: Biotin--[acetyl-CoA-carboxylase] ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region
YP_004053929.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: sli:Slin_3002 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_004053930.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR003960: IPR005936: IPR003593: IPR003959: IPR 000642; KEGG: sli:Slin_3001 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; PRIAM: Microtubule-severing ATPase; SMART: ATPase AAA; SPTR: Cell division protein FtsH, putative; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_004053931.1	KEGG: fnu:FN2074 BslIM; SPTR: BslIM
YP_004053932.1	KEGG: sli:Slin_1736 hypothetical protein; SPTR: uncharacterized protein
YP_004053933.1	InterPro IPR013078; KEGG: sfr:Sfri_2302 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase family protein; PFAM: Phosphoglycerate mutase family
YP_004053934.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001638: IPR003661: IPR003594: IPR004358: IPR 005467; KEGG: caa:Caka_1431 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3
YP_004053935.1	KEGG: chu:CHU_0707 hypothetical protein; SPTR: uncharacterized protein
YP_004053936.1	InterPro IPR018334: IPR001845; KEGG: chu:CHU_0706 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family
YP_004053937.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR011951: IPR006439: IPR005834: IPR005833; KEGG: sli:Slin_3999 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD superfamily (Subfamily IA) hydrolase; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254
YP_004053938.1	KEGG: sli:Slin_0428 transglutaminase domain protein; SPTR: Transglutaminase-like enzyme; cysteine protease
YP_004053939.1	KEGG: sli:Slin_1897 hypothetical protein; SPTR: uncharacterized protein
YP_004053940.1	COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: sli:Slin_5686 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Probable phosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_004053941.1	KEGG: cpi:Cpin_6202 hypothetical protein; SPTR: uncharacterized protein
YP_004053942.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_6408 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004053943.1	InterPro IPR003231: IPR006163: IPR009081; KEGG: chu:CHU_1398 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004053944.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003594: IPR004358: IPR005467; KEGG: cpi:Cpin_0952 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004053945.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078: IPR001789: IPR003593: IPR002197: IPR 020441; KEGG: dfe:Dfer_4836 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: two-component response regulator transcriptional regulatory protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004053946.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: cat:CA2559_12583 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004053947.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR020904: IPR002198: IPR002347; KEGG: phe:Phep_0379 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: oxidoreductase/dehydrogenase; PFAM: short chain dehydrogenase
YP_004053948.1	KEGG: cal:CaO19.2885 DNA primase large subunit; SPTR: uncharacterized protein
YP_004053949.1	COGs: COG0797 Lipoprotein; InterPro IPR012997: IPR005132: IPR007730; KEGG: lic:LIC10054 lipoprotein; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; SPTR: uncharacterized protein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A
YP_004053950.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: chu:CHU_0195 sigma factor SigB regulation protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Serine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004053951.1	InterPro IPR003658: IPR002645; KEGG: chu:CHU_0194 anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004053952.1	KEGG: chu:CHU_0193 hypothetical protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004053953.1	COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: chu:CHU_0192 peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: exported isomerase; PFAM: PPIC-type PPIASE domain
YP_004053954.1	KEGG: aas:Aasi_0784 hypothetical protein; SPTR: uncharacterized protein
YP_004053955.1	COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR015391: IPR000297; KEGG: chu:CHU_0191 peptidyl-prolyl cis-trans isomerase (survival protein); PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: exported peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_004053956.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR016366: IPR011703; KEGG: sli:Slin_0805 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: MoxR protein; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004053957.1	InterPro IPR013740: IPR017936; KEGG: cpi:Cpin_6146 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_004053958.1	KEGG: fjo:Fjoh_4186 hypothetical protein
YP_004053960.1	KEGG: bvu:BVU_1028 hypothetical protein; SPTR: lipoprotein
YP_004053961.1	COGs: COG0443 Molecular chaperone; InterPro IPR018181: IPR012725: IPR013126: IPR001023; KEGG: chu:CHU_3101 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_004053962.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: gfo:GFO_1648 TrmH family tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: TrmH family tRNA/rRNA methyltransferase; PFAM: SpoU rRNA Methylase family
YP_004053963.1	KEGG: gfo:GFO_2211 hypothetical protein; SPTR: uncharacterized protein
YP_004053964.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: fjo:Fjoh_4702 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 2
YP_004053965.1	KEGG: fjo:Fjoh_1869 hypothetical protein; SPTR: HIT family protein
YP_004053966.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR002195: IPR006680; KEGG: fba:FIC_00226 dihydroorotase; PFAM: amidohydrolase; SPTR: Possible dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004053967.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR000629: IPR014001: IPR001650: IPR011545: IPR 014021: IPR014014; KEGG: sli:Slin_5691 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004053968.1	InterPro IPR011701; KEGG: gfo:GFO_0020 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily permease; PFAM: Major Facilitator Superfamily
YP_004053969.1	KEGG: pyo:PY03578 hypothetical protein; SPTR: uncharacterized protein PY03578
YP_004053970.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: zpr:ZPR_0345 secreted dipeptidyl-peptidase IV family protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Secreted dipeptidyl-peptidase IV family protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_004053971.1	KEGG: dfe:Dfer_3756 hypothetical protein; SPTR: uncharacterized protein
YP_004053972.1	InterPro IPR000601: IPR006626; KEGG: dfe:Dfer_4525 parallel beta-helix repeat protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; Parallel beta-helix repeat; SPTR: Parallel beta-helix repeat protein; PFAM: PKD domain; REJ domain
YP_004053973.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR017871: IPR004602: IPR003439; KEGG: chu:CHU_3698 excinuclease ABC subunit A; PFAM: ABC transporter related; SPTR: Excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004053974.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: mbn:Mboo_1288 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_004053975.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198: IPR002347; KEGG: cyc:PCC7424_4642 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004053976.1	KEGG: msi:Msm_1420 UvrD/Rep family helicase; SPTR: topoisomerase DNA-binding C4 zinc finger domain protein
YP_004053977.1	KEGG: rbi:RB2501_12042 hypothetical protein; SPTR: uncharacterized protein
YP_004053978.1	KEGG: mdo:100032155 similar to MAX dimerization protein 5; SPTR: Predicted protein
YP_004053979.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006095: IPR014362: IPR006097: IPR006096; KEGG: dat:HRM2_03260 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: GdhA1; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004053980.1	KEGG: dmo:Dmoj_GI24870 GI24870 gene product from transcript GI24870-RA; SPTR: GI24870
YP_004053981.1	KEGG: gfo:GFO_3276 hypothetical protein; SPTR: uncharacterized protein
YP_004053982.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871: IPR003593: IPR003439; KEGG: gfo:GFO_3275 ABC-type transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ATP-binding protein; PFAM: ABC transporter
YP_004053983.1	COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: clj:CLJU_c25680 erythromycin esterase; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase; PFAM: Erythromycin esterase
YP_004053984.1	InterPro IPR019861; KEGG: chu:CHU_3655 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; manually curated; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004053985.1	InterPro IPR019825: IPR000601; KEGG: cpi:Cpin_6899 conserved repeat domain protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Conserved repeat domain protein
YP_004053986.1	KEGG: bxe:Bxe_A3946 hypothetical protein; SPTR: uncharacterized protein
YP_004053987.1	InterPro IPR000834; KEGG: rbi:RB2501_11282 secreted protein containing N-terminal zinc-dependent carboxypeptidase related domain; PFAM: peptidase M14 carboxypeptidase A; SPTR: Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain; PFAM: Zinc carboxypeptidase
YP_004053988.1	KEGG: dfe:Dfer_5072 OmpA-related protein; SPTR: OmpA-related protein
YP_004053989.1	InterPro IPR000782; KEGG: cpi:Cpin_6992 hypothetical protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: uncharacterized protein; PFAM: Fasciclin domain
YP_004053990.1	COGs: COG2356 Endonuclease I; InterPro IPR007346: IPR004365; KEGG: oih:OB2858 extracellular ribonuclease; PFAM: Endonuclease I; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Extracellular ribonuclease; PFAM: Endonuclease I
YP_004053991.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_3735 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004053992.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: rmr:Rmar_0902 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Multidrug resistance protein, putative; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004053993.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fjo:Fjoh_2941 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: outer membrane protein TolC; PFAM: Outer membrane efflux protein
YP_004053994.1	KEGG: dfe:Dfer_3777 conserved hypothetical protein, membrane; SPTR: uncharacterized protein
YP_004053995.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006690: IPR011659: IPR006665: IPR006664; KEGG: chu:CHU_0217 outer membrane protein, porin F precursor; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein, porin F; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004053996.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR006664; KEGG: chu:CHU_3735 outer membrane protein; PFAM: OmpA/MotB domain protein; SPTR: Possible outer membrane protein; PFAM: OmpA family
YP_004053997.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: phe:Phep_1271 patatin; PFAM: Patatin; SPTR: Patatin; PFAM: Patatin-like phospholipase
YP_004053998.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: rmr:Rmar_1597 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase, M23/M37 family protein; PFAM: Peptidase family M23
YP_004053999.1	KEGG: dfe:Dfer_2587 hypothetical protein; SPTR: uncharacterized protein
YP_004054000.1	COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: sli:Slin_4415 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase
YP_004054001.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: zpr:ZPR_2059 ABC-type transporter periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Periplasmic-binding protein of ABC transporter; PFAM: Periplasmic binding protein
YP_004054002.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: fjo:Fjoh_0082 transport system permease protein; PFAM: transport system permease protein; SPTR: Iron(III) ABC transporter permease; PFAM: FecCD transport family
YP_004054003.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: fps:FP1995 iron ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Probable ABC-type iron(III)-transport system, ATPase component; PFAM: ABC transporter
YP_004054004.1	KEGG: cli:Clim_1546 hypothetical protein; SPTR: uncharacterized protein
YP_004054005.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_5541 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator; PFAM: Ferric uptake regulator family
YP_004054006.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871: IPR003593: IPR001140: IPR003439: IPR 017940; KEGG: sli:Slin_6331 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: ATPase; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004054007.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006095: IPR016211: IPR006097: IPR006096; KEGG: aas:Aasi_0423 hypothetical protein; PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; SPTR: Glutamate dehydrogenase/leucine dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004054008.1	COGs: COG0781 Transcription termination factor; InterPro IPR011605: IPR006027; KEGG: sli:Slin_6330 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_004054009.1	KEGG: sli:Slin_6329 hypothetical protein; SPTR: uncharacterized protein
YP_004054010.1	InterPro IPR011467; KEGG: cat:CA2559_12918 hypothetical protein; PFAM: protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004054011.1	COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: uncharacterized protein; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_004054012.1	KEGG: sli:Slin_6326 hypothetical protein; SPTR: uncharacterized protein
YP_004054013.1	COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: chu:CHU_2441 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_004054014.1	KEGG: dfe:Dfer_0425 hypothetical protein; SPTR: uncharacterized protein
YP_004054015.1	KEGG: cps:CPS_2103 hypothetical protein; SPTR: AMV265
YP_004054016.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845: IPR011904: IPR000873; KEGG: chu:CHU_2429 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acetate--CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_004054017.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR019734: IPR001932: IPR001440: IPR010822: IPR 013026; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Stage II sporulation protein E; hypothetical protein; SMART: protein phosphatase 2C domain protein; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases; PFAM: 26S proteasome subunit RPN7; Stage II sporulation protein E (SpoIIE)
YP_004054018.1	InterPro IPR013099: IPR003148: IPR003091: IPR006037; KEGG: dsa:Desal_0933 ion transport 2 domain protein; PFAM: Ion transport 2 domain protein; TrkA-N domain protein; SPTR: Ion transport 2 domain protein; PFAM: TrkA-N domain; Ion channel
YP_004054019.1	KEGG: chu:CHU_1801 hypothetical protein; SPTR: uncharacterized protein
YP_004054020.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: chu:CHU_0687 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_004054021.1	COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: sli:Slin_5360 protein of unknown function UCP012535; PFAM: protein of unknown function UCP012535; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317)
YP_004054022.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR020612: IPR005840: IPR005839: IPR006638: IPR 013848: IPR007197: IPR002792; KEGG: chu:CHU_0653 2-methylthioadenine synthetase; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_004054023.1	KEGG: cpi:Cpin_0159 hypothetical protein; SPTR: uncharacterized protein
YP_004054024.1	KEGG: aas:Aasi_0797 hypothetical protein; SPTR: uncharacterized protein
YP_004054025.1	COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR000257: IPR006361; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_004054026.1	COGs: COG1760 L-serine deaminase; InterPro IPR004642: IPR005130; KEGG: aoe:Clos_1741 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; PRIAM: L-serine ammonia-lyase; SPTR: Probable L-serine dehydratase alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: Serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit
YP_004054027.1	COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481: IPR004837; KEGG: rca:Rcas_3954 CaCA family Na(+)/Ca(+) antiporter; PFAM: sodium/calcium exchanger membrane region; SPTR: uncharacterized protein; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_004054028.1	COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: gfo:GFO_1565 uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_004054029.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007: IPR002933; KEGG: chu:CHU_0067 aminopeptidase; PFAM: peptidase M20; SPTR: Aminopeptidase, M42 family; PFAM: M42 glutamyl aminopeptidase
YP_004054030.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR005904: IPR000836; KEGG: dfe:Dfer_3743 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_004054031.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850: IPR006259; KEGG: dfe:Dfer_4092 adenylate kinase; PFAM: adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_004054032.1	COGs: COG0536 GTPase; InterProIPR006074: IPR014100: IPR005225: IPR006169: IPR 002917: IPR006073; KEGG: chu:CHU_0069 GTPase ObgE; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_004054033.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740; KEGG: chu:CHU_0070 molecular chaperone, heat shock protein; PFAM: GrpE protein; SPTR: Co-chaperone GrpE; PFAM: GrpE
YP_004054034.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR018253: IPR012724: IPR001623: IPR001305: IPR 002939: IPR003095; KEGG: chu:CHU_0071 molecular chaperone, heat shock protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: DnaJ protein; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_004054035.1	KEGG: lsp:Bsph_2464 hypothetical protein; SPTR: uncharacterized protein
YP_004054036.1	KEGG: zpr:ZPR_3271 hypothetical protein; SPTR: uncharacterized protein
YP_004054037.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: zpr:ZPR_1290 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: integron integrase
YP_004054038.1	KEGG: mfe:Mefer_1088 DNA polymerase II small subunit; SPTR: Glycoside hydrolase family 2, sugar binding
YP_004054039.1	InterPro IPR001387; KEGG: lsp:Bsph_p098 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: uncharacterized protein; PFAM: Helix-turn-helix
YP_004054040.1	KEGG: dgr:Dgri_GH20569 GH20569 gene product from transcript GH20569-RA; SPTR: GH20569
YP_004054041.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052: IPR003356: IPR002296; KEGG: aat:D11S_1858 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: N-6 DNA Methylase family; PFAM: N-6 DNA Methylase
YP_004054042.1	KEGG: caa:Caka_0294 hypothetical protein; SPTR: uncharacterized protein
YP_004054043.1	KEGG: ppa:PAS_chr4_0958 hypothetical protein; SPTR: Hypothetical phage protein
YP_004054044.1	InterPro IPR000494; KEGG: zpr:ZPR_1515 leucine-rich protein; PFAM: epidermal growth-factor receptor (EGFR) L domain; SPTR: uncharacterized protein; PFAM: Receptor L domain
YP_004054045.1	KEGG: sbi:SORBI_07g005470 hypothetical protein; SPTR: uncharacterized protein
YP_004054046.1	KEGG: fps:FP0758 beta-N-acetylglucosaminidase precursor; SPTR: Uncharacterized proteins, LmbE homologs
YP_004054047.1	KEGG: lrl:LC705_01802 phosphoenolpyruvate--protein phosphotransferase; SPTR: uncharacterized protein
YP_004054048.1	KEGG: cbe:Cbei_3152 DEAD/DEAH box helicase domain-containing protein
YP_004054049.1	KEGG: tet:TTHERM_00661710 Josephin family protein; SPTR: LOC100158371 protein
YP_004054050.1	KEGG: tva:TVAG_253910 hypothetical protein; SPTR: uncharacterized protein
YP_004054051.1	InterPro IPR007069; KEGG: fba:FIC_01214 transposase; PFAM: transposase; SPTR: Transposase; PFAM: transposase
YP_004054052.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fba:FIC_01213 probable integrase; PFAM: integrase family protein; SPTR: Probable integrase; PFAM: Phage integrase family
YP_004054053.1	KEGG: zpr:ZPR_3724 hypothetical protein; SPTR: uncharacterized protein
YP_004054054.1	KEGG: dae:Dtox_1722 hypothetical protein; SPTR: uncharacterized protein
YP_004054055.1	KEGG: bvu:BVU_3663 hypothetical protein; SPTR: uncharacterized protein
YP_004054056.1	KEGG: fpl:Ferp_0613 protein of unknown function DUF125 transmembrane; SPTR: uncharacterized protein
YP_004054057.1	KEGG: tet:TTHERM_00731380 Integral membrane protein DUF6 containing protein; SPTR: uncharacterized protein
YP_004054058.1	KEGG: cps:CPS_1853 biopolymer transport ExbB protein; SPTR: membrane protein
YP_004054059.1	KEGG: sai:Saci_0258 ABC transporter; SPTR: ABC transporter
YP_004054060.1	KEGG: hch:HCH_03732 hypothetical protein; SPTR: uncharacterized protein
YP_004054061.1	KEGG: bbl:BLBBGE_612 transmembrane HD family protein; SPTR: transmembrane HD family protein
YP_004054062.1	COGs: COG4185 conserved hypothetical protein; KEGG: bvu:BVU_1630 hypothetical protein; SPTR: Uncharacterized protein conserved in bacteria; PFAM: Zeta toxin
YP_004054063.1	KEGG: dfe:Dfer_4482 hypothetical protein; SPTR: uncharacterized protein
YP_004054064.1	COGs: COG4680 conserved hypothetical protein; InterPro IPR018669; KEGG: gfo:GFO_0923 hypothetical protein; PFAM: Protein of unknown function DUF2136; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2136)
YP_004054065.1	COGs: COG5499 transcription regulator containing HTH domain; InterPro IPR001387; KEGG: fps:FP1227 XRE family transcriptional regulator; SPTR: Helix-turn-helix motif
YP_004054066.1	COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: rmr:Rmar_1887 protein of unknown function DUF433; PFAM: protein of unknown function DUF433; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF433)
YP_004054067.1	KEGG: sli:Slin_1155 hypothetical protein; SPTR: uncharacterized protein
YP_004054068.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR005467; KEGG: bur:Bcep18194_C7668 GAF sensor hybrid histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: GAF sensor hybrid histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004054069.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105: IPR002937; KEGG: hau:Haur_0609 zeta-phytoene desaturase; PFAM: amine oxidase; SPTR: Gamma-carotene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase
YP_004054070.1	InterPro IPR007354; KEGG: afl:Aflv_2198 hypothetical protein; PFAM: protein of unknown function DUF422; SPTR: Membrane protein, putative; PFAM: Protein of unknown function (DUF422)
YP_004054071.1	COGs: COG0366 Glycosidase; InterPro IPR000601: IPR006589: IPR006047; KEGG: chl:Chy400_0553 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; PKD domain containing protein; SMART: alpha amylase catalytic sub domain; PKD domain containing protein; SPTR: Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain; PKD domain
YP_004054072.1	COGs: COG1533 DNA repair photolyase; InterPro IPR006638: IPR007197; KEGG: gfo:GFO_3214 radical SAM superfamily protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM superfamily protein; PFAM: Radical SAM superfamily
YP_004054073.1	COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: phe:Phep_3604 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF477)
YP_004054074.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: chu:CHU_0733 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Probable TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004054075.1	COGs: COG3797 conserved hypothetical protein; InterPro IPR012545; KEGG: lic:LIC10638 hypothetical protein; PFAM: protein of unknown function DUF1697; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1697)
YP_004054076.1	KEGG: phe:Phep_1470 hypothetical protein; SPTR: uncharacterized protein
YP_004054077.1	COGs: COG1741 Pirin-related protein; InterPro IPR012093: IPR003829; KEGG: fjo:Fjoh_1735 pirin domain-containing protein; PFAM: Pirin domain protein; SPTR: Pirin family proteins; PFAM: Pirin
YP_004054078.1	KEGG: aga:AgaP_AGAP008173 AGAP008173-PA; SPTR: AGAP008173-PA
YP_004054079.1	KEGG: pfa:PFB0915w liver stage antigen 3; SPTR: Lipoprotein, putative
YP_004054080.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871: IPR003593: IPR003439: IPR013525; KEGG: pdi:BDI_1446 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; ABC-2 type transporter; SMART: ATPase AAA; SPTR: ABC transporter ATP-binding protein, putative; PFAM: ABC transporter; Tellurite resistance protein TerB; ABC-2 type transporter
YP_004054081.1	KEGG: srm:SRM_00019 hypothetical protein; SPTR: Lipoprotein, putative
YP_004054082.1	KEGG: edi:EDI_058410 hypothetical protein; SPTR: uncharacterized protein
YP_004054083.1	KEGG: fjo:Fjoh_3511 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004054084.1	KEGG: cat:CA2559_13268 hypothetical protein; SPTR: outer membrane protein, probably involved in nutrient binding
YP_004054085.1	COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR021115: IPR002129: IPR010977; KEGG: gau:GAU_3087 aromatic amino acid decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; SPTR: Tyrosine decarboxylase 1; PFAM: Pyridoxal-dependent decarboxylase conserved domain
YP_004054086.1	InterPro IPR019850; KEGG: dfe:Dfer_4560 protein involved in gliding motility GldD; SPTR: Protein involved in gliding motility GldD; TIGRFAM: gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD
YP_004054087.1	COGs: COG1200 RecG-like helicase; InterProIPR019793: IPR004609: IPR014001: IPR001650: IPR 004365: IPR011545: IPR014021; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase recG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG
YP_004054088.1	KEGG: bcz:BCZK1034 group-specific protein; SPTR: uncharacterized protein
YP_004054089.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791: IPR003335: IPR005665; KEGG: aas:Aasi_0092 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD/SecF; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_004054090.1	COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437: IPR020580: IPR001597; KEGG: sli:Slin_5204 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like; aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating)
YP_004054091.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: phe:Phep_3822 peptidase M28; PFAM: peptidase M28; SPTR: Aminopeptidase; PFAM: Peptidase family M28
YP_004054092.1	KEGG: nth:Nther_2617 periplasmic binding protein
YP_004054093.1	KEGG: bth:BT_0407 hypothetical protein; SPTR: uncharacterized protein
YP_004054094.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR020583: IPR020550: IPR000760; KEGG: phe:Phep_2935 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: Inositol monophosphatase; PFAM: Inositol monophosphatase family
YP_004054095.1	KEGG: dfe:Dfer_4998 hypothetical protein; SPTR: transmembrane protein
YP_004054096.1	COGs: COG0313 methyltransferase; InterPro IPR018063: IPR008189: IPR000878; KEGG: bth:BT_2273 methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: uncharacterized protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004054097.1	COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: cpi:Cpin_1008 transcriptional coactivator/pterin dehydratase; PFAM: transcriptional coactivator/pterin dehydratase; SPTR: Pterin-4-alpha-carbinolamine dehydratase; PFAM: Pterin 4 alpha carbinolamine dehydratase
YP_004054098.1	KEGG: srm:SRM_01432 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF493)
YP_004054099.1	COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: dfe:Dfer_4724 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_004054100.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: sli:Slin_1440 transporter-associated region; PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; SPTR: hemolysin; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_004054101.1	InterPro IPR010664; KEGG: chu:CHU_3270 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_004054102.1	InterPro IPR013026; KEGG: bvu:BVU_2563 hypothetical protein; SPTR: TPR domain protein
YP_004054103.1	KEGG: sli:Slin_1298 hypothetical protein; SPTR: outer membrane protein
YP_004054104.1	COGs: COG1521 transcriptional regulator protein; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bvg accessory factor; SPTR: transcriptional acitvator, Baf family; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_004054105.1	COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; InterPro IPR005338; KEGG: fba:FIC_01306 anhydro-N-acetylmuramic acid kinase; PFAM: protein of unknown function UPF0075; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0075)
YP_004054106.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: cat:CA2559_06630 Glu/Leu/Phe/Val dehydrogenase family protein; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: Glu/Leu/Phe/Val dehydrogenase family protein; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004054107.1	COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: aas:Aasi_1246 hypothetical protein; PFAM: Citrate transporter; SPTR: uncharacterized protein; TC 9.B.53
YP_004054108.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR000897: IPR004390: IPR003593: IPR013822; KEGG: sli:Slin_5354 signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_004054109.1	KEGG: sli:Slin_5353 hypothetical protein; SPTR: uncharacterized protein
YP_004054110.1	InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_004054111.1	COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: fjo:Fjoh_4983 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_004054112.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR010164: IPR005814; KEGG: gfo:GFO_1886 ornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: Acetylornithine aminotransferase, putative; TIGRFAM: ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase
YP_004054113.1	KEGG: syg:sync_0149 GumB protein; SPTR: Oxidoreductase, FAD-dependent
YP_004054114.1	COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: zpr:ZPR_3153 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal domain
YP_004054115.1	KEGG: rbi:RB2501_12087 hypothetical protein; SPTR: uncharacterized protein
YP_004054116.1	KEGG: ehi:EHI_033700 structural maintenance of chromosomes protein; SPTR: uncharacterized protein
YP_004054118.1	InterPro IPR004638: IPR011701; KEGG: cpi:Cpin_4689 drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; SPTR: Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_004054119.1	KEGG: chu:CHU_0806 hypothetical protein; SPTR: uncharacterized protein
YP_004054120.1	KEGG: pat:Patl_1908 hypothetical protein; SPTR: uncharacterized protein
YP_004054121.1	COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: cpe:CPE0985 hypothetical protein; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: uncharacterized protein; PFAM: C4-dicarboxylate anaerobic carrier
YP_004054122.1	COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: cpi:Cpin_6024 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200)
YP_004054123.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fjo:Fjoh_1391 beta-lactamase domain-containing protein; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_004054124.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_4424 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004054125.1	KEGG: amr:AM1_0196 hypothetical protein; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolase family 53
YP_004054127.1	COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: zpr:ZPR_1043 membrane protein; PFAM: protein of unknown function DUF808; SPTR: Conserved hypothetical transmembrane protein; PFAM: Protein of unknown function (DUF808)
YP_004054128.1	COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314; KEGG: cpb:Cphamn1_1409 hypothetical protein; PFAM: protein of unknown function DUF399; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF399
YP_004054129.1	COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062; KEGG: pdi:BDI_2017 imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; SPTR: 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_004054130.1	KEGG: dfe:Dfer_4245 hypothetical protein; SPTR: GTP-binding protein EngA; PFAM: SprT-like family
YP_004054131.1	KEGG: chu:CHU_3066 hypothetical protein; SPTR: uncharacterized protein
YP_004054132.1	COGs: COG2103 sugar phosphate isomerase; InterPro IPR005486: IPR005488: IPR001347; KEGG: chu:CHU_3065 N-acetylmuramic acid-6-phosphate etherase; PFAM: sugar isomerase (SIS); SPTR: Glucokinase regulatory protein, sugar phosphate isomerase; TIGRFAM: glucokinase regulatory-like protein; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase
YP_004054133.1	COGs: COG2971 N-acetylglucosamine kinase; KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: uncharacterized protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family
YP_004054134.1	KEGG: phe:Phep_4235 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1469)
YP_004054135.1	KEGG: sli:Slin_5645 hypothetical protein; SPTR: uncharacterized protein
YP_004054136.1	COGs: COG1646 phosphate-binding protein with TIM-barrel fold; InterPro IPR010946: IPR008205; KEGG: chu:CHU_3825 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: PcrB family protein; SPTR: uncharacterized protein; TIGRFAM: geranylgeranylglyceryl phosphate synthase; geranylgeranylglyceryl phosphate synthase family protein; PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; geranylgeranylglyceryl phosphate synthase family protein
YP_004054137.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062: IPR018060: IPR000005; KEGG: chu:CHU_3826 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004054138.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089: IPR006092: IPR006091: IPR006090; KEGG: fjo:Fjoh_0455 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004054139.1	COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: chu:CHU_3831 hypothetical protein; PFAM: peptidase membrane zinc metallopeptidase; SPTR: uncharacterized protein; PFAM: neutral zinc metallopeptidase
YP_004054140.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011914: IPR004821: IPR004820; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: cytidylyltransferase; SPTR: RfaE bifunctional protein, domain II; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain
YP_004054141.1	InterPro IPR005242; KEGG: chu:CHU_3833 integral membrane protein; SPTR: Integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_004054142.1	COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: chu:CHU_3834 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_004054143.1	COGs: COG0414 Panthothenate synthetase; InterPro IPR003721; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_004054144.1	COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: sli:Slin_4463 starch synthase; PFAM: Starch synthase catalytic domain-containing protein; SPTR: Glycogen synthase; PFAM: Starch synthase catalytic domain
YP_004054145.1	KEGG: fjo:Fjoh_1685 hypothetical protein; SPTR: uncharacterized protein
YP_004054146.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR005855: IPR000583: IPR001347: IPR017932; KEGG: chu:CHU_3838 glucosamine--fructose-6-phosphate aminotransferase; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); SPTR: Glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_004054148.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: zpr:ZPR_4062 integral membrane protein; PFAM: cation efflux protein; SPTR: Integral membrane protein; PFAM: Cation efflux family
YP_004054149.1	KEGG: fjo:Fjoh_3090 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054150.1	InterPro IPR006121; KEGG: zpr:ZPR_3369 protein containing heavy-metal-associated domain; SPTR: Protein containing heavy-metal-associated domain; PFAM: Heavy-metal-associated domain
YP_004054151.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303: IPR017969: IPR000150: IPR006403: IPR 006416: IPR001757: IPR006121: IPR008250: IPR005834: IPR001756; KEGG: zpr:ZPR_3370 copper transport-related membrane protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: copper transport-related membrane protein; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004054152.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062: IPR018060: IPR000005: IPR020449; KEGG: zpr:ZPR_3376 regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004054153.1	KEGG: rbi:RB2501_04685 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054154.1	KEGG: gfo:GFO_2947 hypothetical protein; SPTR: Lipoprotein, putative; PFAM: Protein of unknown function (DUF2911)
YP_004054155.1	COGs: COG1830 DhnA-type fructose-1 6-bisphosphate aldolase; InterPro IPR002915; KEGG: zpr:ZPR_3401 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: Fructose-bisphosphate aldolase; PFAM: DeoC/LacD family aldolase
YP_004054156.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR001958; KEGG: zpr:ZPR_3415 multidrug-efflux transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug-efflux transporter; PFAM: Major Facilitator Superfamily
YP_004054157.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303: IPR006403: IPR006416: IPR001757: IPR 008250: IPR005834: IPR000695; KEGG: zpr:ZPR_3414 copper-transporting ATPase, P-type (CopB); PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-transporting ATPase, P-type (CopB); TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004054158.1	COGs: COG2326 conserved hypothetical protein; InterPro IPR016898: IPR005660; KEGG: cpi:Cpin_0387 protein of unknown function DUF344; PFAM: protein of unknown function DUF344; SPTR: uncharacterized protein; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family
YP_004054159.1	KEGG: zpr:ZPR_3413 phosphoribosylpyrophosphate synthetase; SPTR: Phosphoribosylpyrophosphate synthetase; manually curated
YP_004054160.1	COGs: COG0531 Amino acid transporter; InterPro IPR002293: IPR004841; KEGG: rbi:RB2501_04725 amino acid transporter; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region protein; PFAM: Amino acid permease; TC 2.A.3
YP_004054161.1	KEGG: zpr:ZPR_3412 hypothetical protein; SPTR: uncharacterized protein
YP_004054162.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: zpr:ZPR_3411 phosphoribosyl transferase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: uncharacterized protein; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004054163.1	COGs: COG0213 Thymidine phosphorylase; InterProIPR017872: IPR016160: IPR013466: IPR000053: IPR 017459: IPR013102; KEGG: rbi:RB2501_04835 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; PRIAM: Thymidine phosphorylase; SPTR: thymidine phosphorylase; TIGRFAM: thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: thymidine phosphorylase
YP_004054164.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: zpr:ZPR_3409 metallo-beta-lactamase superfamily protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_004054165.1	InterPro IPR005144: IPR007560; KEGG: zpr:ZPR_3407 nuclease; PFAM: ATP-cone domain protein; restriction endonuclease; SPTR: uncharacterized protein; PFAM: ATP cone domain; Restriction endonuclease
YP_004054166.1	InterPro IPR003016; KEGG: vpa:VP1840 hypothetical protein; SPTR: uncharacterized protein
YP_004054167.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR018107: IPR001991; KEGG: rbi:RB2501_04810 proton/sodium-glutamate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: Proton/sodium-glutamate symporter; PFAM: Sodium:dicarboxylate symporter family
YP_004054168.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020830: IPR006436: IPR020831: IPR020828; KEGG: zpr:ZPR_3400 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)(+)) (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II
YP_004054169.1	InterPro IPR013099; KEGG: zpr:ZPR_4246 ion channel protein; PFAM: Ion transport 2 domain protein; SPTR: Ion channel protein; PFAM: Ion channel
YP_004054170.1	COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: cpi:Cpin_4662 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; TC 2.A.33.1.1
YP_004054171.1	InterPro IPR012932; KEGG: gfo:GFO_1337 hypothetical protein; PFAM: Vitamin K epoxide reductase; SPTR: uncharacterized protein; PFAM: Vitamin K epoxide reductase family
YP_004054172.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: gfo:GFO_1336 nucleotide-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Nucleotide-diphosphate-sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_004054173.1	KEGG: rbi:RB2501_04790 hypothetical protein; SPTR: uncharacterized protein
YP_004054174.1	KEGG: rbi:RB2501_04775 hypothetical protein; SPTR: uncharacterized protein
YP_004054175.1	KEGG: rbi:RB2501_04770 hypothetical protein; SPTR: uncharacterized protein
YP_004054176.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: zpr:ZPR_3406 universal stress protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004054177.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: gfo:GFO_1335 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_004054178.1	InterPro IPR018649; KEGG: zpr:ZPR_3394 predicted membrane protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2078)
YP_004054179.1	InterPro IPR007029; KEGG: tau:Tola_1985 heavy metal translocating P-type ATPase; PFAM: YHS domain-containing protein; SPTR: Heavy metal translocating P-type ATPase; PFAM: YHS domain
YP_004054180.1	COGs: COG3439 conserved hypothetical protein; InterPro IPR016796: IPR005180; KEGG: gfo:GFO_1289 hypothetical protein; PFAM: protein of unknown function DUF302; SPTR: Protein containing DUF302; PFAM: Domain of unknown function DUF302
YP_004054181.1	KEGG: zpr:ZPR_4243 hypothetical protein; SPTR: uncharacterized protein
YP_004054182.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005: IPR006121; KEGG: cat:CA2559_00255 regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004054183.1	KEGG: ngr:NAEGRDRAFT_59829 cation efflux protein; SPTR: Cation efflux protein
YP_004054184.1	KEGG: gfo:GFO_2941 membrane protein; SPTR: Membrane protein
YP_004054185.1	KEGG: rbi:RB2501_04850 hypothetical protein; SPTR: uncharacterized protein
YP_004054186.1	KEGG: cel:T28F3.5 hypothetical protein; SPTR: Protein T28F3.5a, partially confirmed by transcript evidence
YP_004054187.1	InterPro IPR000589; KEGG: rbi:RB2501_04685 hypothetical protein; SPTR: uncharacterized protein
YP_004054188.1	COGs: COG2132 multicopper oxidase; InterProIPR002355: IPR006311: IPR011707: IPR011706: IPR 017909; KEGG: gfo:GFO_1338 CotA-like multicopper oxidase; PFAM: multicopper oxidase type 3; multicopper oxidase type 2; SPTR: CotA-like multicopper oxidase; PFAM: Multicopper oxidase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004054189.1	COGs: COG0531 Amino acid transporter; InterPro IPR002293: IPR004841; KEGG: rbi:RB2501_04725 amino acid transporter; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region protein; PFAM: Amino acid permease; TC 2.A.3
YP_004054190.1	InterPro IPR018649; KEGG: hma:pNG6050 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2078)
YP_004054191.1	InterPro IPR001763; KEGG: tbd:Tbd_1650 rhodanese-like protein; SMART: Rhodanese domain protein; SPTR: Rhodanese-like protein; PFAM: Rhodanese-like domain
YP_004054192.1	InterPro IPR007029; KEGG: cpo:COPRO5265_1254 copper-transporting P-type ATPase; PFAM: YHS domain-containing protein; SPTR: Copper-transporting P-type ATPase; PFAM: YHS domain
YP_004054193.1	KEGG: gfo:GFO_1172 membrane or secreted protein; SPTR: Membrane or secreted protein
YP_004054194.1	KEGG: rno:308939 importin 7; SPTR: Importin 7 (Predicted), isoform CRA_c
YP_004054195.1	COGs: COG3439 conserved hypothetical protein; InterPro IPR016796: IPR005180; KEGG: gfo:GFO_1117 hypothetical protein; PFAM: protein of unknown function DUF302; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF302
YP_004054196.1	COGs: COG2132 multicopper oxidase; InterPro IPR002355: IPR011707: IPR001117: IPR011706; KEGG: gfo:GFO_2942 PcoA-like multicopper oxidase; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; SPTR: PcoA-like multicopper oxidase; PFAM: Multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family
YP_004054197.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005: IPR006121; KEGG: cat:CA2559_00255 regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC-like helix-turn-helix-domain containing protein; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004054198.1	KEGG: pmx:PERMA_0554 MlpB; SPTR: uncharacterized protein
YP_004054199.1	KEGG: nph:NP2860A aspartic acid-rich protein; SPTR: uncharacterized protein
YP_004054200.1	KEGG: fjo:Fjoh_3073 hypothetical protein; SPTR: Hypothetical lipoprotein; PFAM: Protein of unknown function (DUF3347)
YP_004054201.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: zpr:ZPR_3378 metal transport-related, exported protein; PFAM: secretion protein HlyD family protein; SPTR: metal transport-related, exported protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Protein of unknown function (DUF3347); TIGRFAM: RND family efflux transporter, MFP subunit
YP_004054202.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: nve:NEMVE_v1g225776 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein
YP_004054203.1	COGs: COG3696 silver efflux pump; InterPro IPR001036; KEGG: zpr:ZPR_3386 copper/silver resistance-related transport membrane protein; PFAM: acriflavin resistance protein; SPTR: copper/silver resistance-related transport membrane protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004054204.1	KEGG: zpr:ZPR_4261 hypothetical protein; SPTR: uncharacterized protein
YP_004054205.1	KEGG: sli:Slin_5074 hypothetical protein; SPTR: uncharacterized protein
YP_004054206.1	InterPro IPR022272; KEGG: fba:FIC_01480 hypothetical protein; SPTR: uncharacterized protein
YP_004054207.1	KEGG: ang:An09g06620 hypothetical protein; SPTR: uncharacterized protein
YP_004054208.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099: IPR000815; KEGG: zpr:ZPR_4028 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Glutathione reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004054209.1	KEGG: nde:NIDE0067 hypothetical protein; SPTR: uncharacterized protein
YP_004054210.1	InterPro IPR017969: IPR006121; KEGG: zpr:ZPR_4022 copper-translocating P-type ATPase; PFAM: Heavy metal transport/detoxification protein; SPTR: Copper-translocating P family ATPase; PFAM: Heavy-metal-associated domain
YP_004054211.1	COGs: COG2608 Copper chaperone; InterPro IPR006121; KEGG: zpr:ZPR_3374 mercuric transport protein; PFAM: Heavy metal transport/detoxification protein; SPTR: mercuric transport protein; PFAM: Heavy-metal-associated domain; MerT mercuric transport protein
YP_004054212.1	InterPro IPR001845; KEGG: sli:Slin_6743 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004054213.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593; KEGG: chu:CHU_3614 DNA repair protein RadA; SMART: ATPase AAA; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA
YP_004054214.1	KEGG: tva:TVAG_221970 hypothetical protein; SPTR: uncharacterized protein
YP_004054215.1	KEGG: bse:Bsel_1508 binding-protein-dependent transport systems inner membrane component; SPTR: uncharacterized protein
YP_004054216.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871: IPR003593: IPR001140: IPR003439: IPR 017940; KEGG: sli:Slin_1469 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: ATPase; PFAM: ABC transporter; ABC transporter transmembrane region
YP_004054217.1	COGs: COG0101 Pseudouridylate synthase; InterPro IPR001406: IPR020097; KEGG: chu:CHU_0483 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_004054218.1	KEGG: pgu:PGUG_05605 similar to heat shock protein 70; SPTR: uncharacterized protein
YP_004054219.1	KEGG: chu:CHU_0307 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2723)
YP_004054220.1	KEGG: gfo:GFO_0295 hypothetical protein; SPTR: uncharacterized protein
YP_004054221.1	KEGG: bfr:BF0046 hypothetical protein; SPTR: uncharacterized protein
YP_004054223.1	COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR013123: IPR001537; KEGG: chu:CHU_0306 TrmH family tRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: tRNA:rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3
YP_004054224.1	KEGG: cpi:Cpin_0142 hypothetical protein; SPTR: Lipoprotein, putative
YP_004054225.1	COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: gfo:GFO_0238 1-aminocyclopropane-1-carboxylate deaminase; SPTR: D-cysteine desulfhydrase DcyD
YP_004054226.1	KEGG: scl:sce7195 protein kinase; SPTR: Protein kinase
YP_004054227.1	KEGG: zpr:ZPR_2758 S-adenosyl-L-methionine-dependent methyltransferase; SPTR: uncharacterized protein
YP_004054228.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterProIPR005986: IPR012080: IPR000534: IPR012280: IPR 000319; KEGG: sli:Slin_5364 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase, USG-1 related protein; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_004054229.1	KEGG: cpi:Cpin_0536 hypothetical protein; SPTR: uncharacterized protein
YP_004054230.1	KEGG: dfe:Dfer_4376 hypothetical protein; SPTR: uncharacterized protein
YP_004054231.1	COGs: COG0696 Phosphoglyceromutase; InterPro IPR005995: IPR011258: IPR006124; KEGG: chu:CHU_3731 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_004054232.1	KEGG: hip:CGSHiEE_05565 hypothetical protein; SPTR: uncharacterized protein
YP_004054233.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: pdi:BDI_3001 site-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004054234.1	COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR004576: IPR014021: IPR001650: IPR003711: IPR 011545: IPR005118: IPR014001; KEGG: dfe:Dfer_3695 transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_004054235.1	COGs: COG0073 EMAP domain; InterPro IPR008231: IPR002547; KEGG: chu:CHU_3785 methionine--tRNA ligase (methionine tRNA synthetase); PFAM: t-RNA-binding domain-containing protein; SPTR: Methionine--tRNA ligase (Methionine tRNA synthetase); TIGRFAM: export-related chaperone CsaA; PFAM: tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; export-related chaperone CsaA
YP_004054236.1	InterPro IPR000298; KEGG: dfe:Dfer_4112 cytochrome c oxidase, subunit III; SPTR: Probable cytochrome-c oxidase transmembrane protein; PFAM: Cytochrome c oxidase subunit III
YP_004054237.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: sli:Slin_5542 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; SPTR: DNA mismatch repair protein MutS; PFAM: MutS domain V
YP_004054238.1	COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR004597: IPR005019; KEGG: zpr:ZPR_4445 DNA-3-methyladenine glycosylase; PFAM: methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: 3-Methyladenine DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I
YP_004054239.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198; KEGG: rmr:Rmar_2136 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004054240.1	InterPro IPR017143; KEGG: zpr:ZPR_4140 hypothetical protein; SPTR: uncharacterized protein
YP_004054241.1	COGs: COG1835 acyltransferase; InterPro IPR002656: IPR018488; KEGG: cbg:CbuG_1385 acyltransferase family; PFAM: acyltransferase 3; SPTR: Acyltransferase family; PFAM: Acyltransferase family
YP_004054242.1	KEGG: chu:CHU_3486 hypothetical protein; SPTR: uncharacterized protein; PFAM: ATP10 protein
YP_004054244.1	COGs: COG1597 Sphingosine kinase; InterPro IPR005218: IPR001206; KEGG: zpr:ZPR_2450 diacylglycerol kinase catalytic subunit; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: Diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family
YP_004054245.1	COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: mxa:MXAN_0055 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2183)
YP_004054246.1	COGs: COG0450 Peroxiredoxin; InterPro IPR017936: IPR000866: IPR019479; KEGG: chu:CHU_3466 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxidase; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004054247.1	KEGG: cnb:CNBD3780 hypothetical protein; SPTR: uncharacterized protein
YP_004054248.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR000644: IPR001807: IPR005829; KEGG: pdi:BDI_1743 chloride channel protein; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SPTR: transport related, membrane protein; PFAM: CBS domain; Voltage gated chloride channel
YP_004054249.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151: IPR019825; KEGG: pdi:BDI_3195 hypothetical protein; PFAM: peptidase S41; SMART: peptidase S41; SPTR: uncharacterized protein; PFAM: Peptidase family S41
YP_004054250.1	KEGG: tca:661133 similar to Metabotropic glutamate receptor precursor; SPTR: uncharacterized protein
YP_004054251.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986: IPR000183; KEGG: gfo:GFO_0749 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_004054252.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR003148: IPR006037: IPR006153; KEGG: gfo:GFO_1965 KefB-and KefC-like glutathione-regulated potassium-efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; SPTR: KefB-and KefC-like glutathione-regulated potassium-efflux system protein; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TrkA-C domain; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family; TC 2.A.37.1
YP_004054253.1	InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_5310 hypothetical protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug domain protein
YP_004054254.1	KEGG: edi:EDI_199130 cation-transporting ATPase 13a1
YP_004054255.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_004054256.1	KEGG: hvo:HVO_A0613 hypothetical protein; SPTR: uncharacterized protein
YP_004054257.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492: IPR000215; KEGG: sli:Slin_1794 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004054258.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198: IPR020904; KEGG: bse:Bsel_0954 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004054259.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145: IPR006224; KEGG: cpi:Cpin_4402 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004054260.1	InterPro IPR000601; KEGG: sli:Slin_5463 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Cell surface protein, putative; PFAM: PKD domain
YP_004054261.1	KEGG: bid:Bind_2266 hypothetical protein; SPTR: uncharacterized protein
YP_004054262.1	KEGG: gau:GAU_0093 hypothetical protein; SPTR: uncharacterized protein
YP_004054263.1	InterPro IPR001387; KEGG: phe:Phep_1912 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix
YP_004054264.1	KEGG: emi:Emin_0166 hypothetical protein; SPTR: uncharacterized protein
YP_004054265.1	COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR002177: IPR008331; KEGG: gfo:GFO_2047 Dps family ferritin-like DNA-binding protein; PFAM: Ferritin Dps family protein; SPTR: Dps family ferritin-like DNA-binding protein; PFAM: Ferritin-like domain
YP_004054266.1	COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: dfe:Dfer_2991 UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; SPTR: UDP-2,3-diacylglucosamine hydrolase; PFAM: Calcineurin-like phosphoesterase
YP_004054267.1	KEGG: bre:BRE_80 hypothetical protein; SPTR: uncharacterized protein
YP_004054268.1	COGs: COG0515 Serine/threonine protein kinase; InterProIPR019734: IPR000719: IPR013026: IPR017442: IPR 001440: IPR020635: IPR002290: IPR017441: IPR008271; KEGG: pat:Patl_0961 TPR repeat-containing serine/threonin protein kinase; PFAM: Serine/threonine-protein kinase-like domain; hypothetical protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain
YP_004054269.1	InterPro IPR011517: IPR014284; KEGG: sus:Acid_1209 ECF subfamily RNA polymerase sigma-24 factor; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family
YP_004054270.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: sli:Slin_6032 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004054271.1	KEGG: dfe:Dfer_3626 hypothetical protein; SPTR: uncharacterized protein
YP_004054272.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR005759: IPR003265: IPR003651: IPR004035; KEGG: dfe:Dfer_3627 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: endonuclease; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_004054273.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: gfo:GFO_3598 sodium:sulfate symporter; PFAM: sodium/sulphate symporter; SPTR: Anion transporter; TIGRFAM: anion transporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter
YP_004054274.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: rbi:RB2501_11277 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: uncharacterized protein; manually curated; PFAM: Acyltransferase
YP_004054275.1	COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: ote:Oter_2032 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain
YP_004054276.1	KEGG: cpi:Cpin_0474 hypothetical protein; SPTR: Phosphoglyceromutase
YP_004054277.1	COGs: COG4843 conserved hypothetical protein; InterPro IPR019264; KEGG: mem:Memar_1511 hypothetical protein; PFAM: Protein of unknown function DUF2179; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2179)
YP_004054278.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR019868: IPR005532; KEGG: chu:CHU_3494 gliding motility-related protein; serine kinase; PFAM: protein of unknown function DUF323; SPTR: Possible gliding motility-related protein; possible serine kinase; TIGRFAM: gliding motility-associated lipoprotein GldJ; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ
YP_004054279.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: dfe:Dfer_0205 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004054280.1	KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: uncharacterized protein
YP_004054281.1	COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dfe:Dfer_4264 protein of unknown function DUF124; PFAM: protein of unknown function DUF124; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266
YP_004054282.1	InterPro IPR003961: IPR008162; KEGG: sdn:Sden_3728 cadherin; PFAM: Fibronectin type III domain protein; SPTR: Cadherin
YP_004054283.1	KEGG: dtu:Dtur_1286 lipoprotein, putative; SPTR: PKD
YP_004054284.1	KEGG: chu:CHU_1025 hypothetical protein; SPTR: uncharacterized protein
YP_004054285.1	COGs: COG2319 FOG: WD40 repeat; InterProIPR019782: IPR017986: IPR019781: IPR001680: IPR 019775; KEGG: chu:CHU_1024 hypothetical protein; PFAM: hypothetical protein; SPTR: Peptidase C14, caspase catalytic subunit p20, putative; PFAM: WD domain, G-beta repeat
YP_004054286.1	KEGG: chu:CHU_1023 hypothetical protein; SPTR: uncharacterized protein
YP_004054287.1	COGs: COG3202 ATP/ADP translocase; InterPro IPR000595; KEGG: chu:CHU_1022 hypothetical protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding domain protein
YP_004054288.1	KEGG: tpt:Tpet_0897 hypothetical protein; SPTR: uncharacterized protein
YP_004054289.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: pdi:BDI_2285 beta-lactamase; PFAM: beta-lactamase; SPTR: beta-lactamase; PFAM: Beta-lactamase
YP_004054290.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pdi:BDI_1047 hypothetical protein; PFAM: LemA family protein; SPTR: uncharacterized protein; PFAM: LemA family
YP_004054291.1	InterPro IPR004256; KEGG: bfr:BF2824 ATPase; PFAM: DUF234 DEXX-box ATPase; SPTR: Predicted protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function
YP_004054292.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: chu:CHU_3430 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004054293.1	COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: chu:CHU_3703 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF477)
YP_004054294.1	InterPro IPR003961; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004054295.1	KEGG: pbe:PB000797.02.0 hypothetical protein; SPTR: uncharacterized protein
YP_004054296.1	KEGG: fjo:Fjoh_2275 OmpA/MotB domain-containing protein; SPTR: uncharacterized protein; manually curated
YP_004054297.1	KEGG: cja:CJA_3270 hypothetical protein; PFAM: Bacterial SH3 domain
YP_004054298.1	KEGG: ame:414017 similar to CG12734-PA, isoform A; SPTR: uncharacterized protein
YP_004054299.1	COGs: COG0250 Transcription antiterminator; InterPro IPR006645; KEGG: cpi:Cpin_2360 NusG antitermination factor; PFAM: NGN domain-containing protein; SMART: NGN domain-containing protein; SPTR: NusG antitermination factor; PFAM: Transcription termination factor nusG
YP_004054300.1	KEGG: gur:Gura_3815 hypothetical protein; SPTR: uncharacterized protein
YP_004054301.1	COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: dhd:Dhaf_1803 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_004054302.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: syp:SYNPCC7002_A0418 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004054303.1	KEGG: npu:Npun_R2545 macrocin-O-methyltransferase domain-containing protein; SPTR: MtfB; PFAM: Macrocin-O-methyltransferase (TylF)
YP_004054304.1	InterPro IPR013216; KEGG: amr:AM1_1907 methyltransferase, putative; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 12; PFAM: Methyltransferase domain
YP_004054305.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sye:Syncc9902_0202 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004054306.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mmx:MmarC6_1579 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004054307.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mmx:MmarC6_1579 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase family 2; manually curated; PFAM: Glycosyl transferase family 2
YP_004054308.1	InterPro IPR000863; KEGG: ttu:TERTU_2349 sulfotransferase; PFAM: sulfotransferase; SPTR: TPR domain protein; PFAM: Sulfotransferase domain
YP_004054309.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mmx:MmarC6_1579 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004054310.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: glo:Glov_1496 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004054311.1	COGs: COG4421 Capsular polysaccharide biosynthesis protein; KEGG: ter:Tery_3136 capsular polysaccharide biosynthesis protein-like; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004054312.1	KEGG: cyt:cce_2734 hypothetical protein; SPTR: uncharacterized protein
YP_004054313.1	KEGG: mgm:Mmc1_3089 hypothetical protein; SPTR: uncharacterized protein
YP_004054314.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mpd:MCP_1931 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: EpsM; manually curated; PFAM: Glycosyl transferase family 2
YP_004054315.1	KEGG: abo:ABO_0921 hypothetical protein; SPTR: uncharacterized protein
YP_004054316.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mac:MA1904 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: PKD domain protein; PFAM: PKD domain
YP_004054317.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR012394: IPR015590: IPR016160; KEGG: nwa:Nwat_1444 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004054318.1	KEGG: ppr:PBPRA0176 hypothetical protein; SPTR: uncharacterized protein DR0488
YP_004054319.1	KEGG: fjo:Fjoh_1372 hypothetical protein; SPTR: uncharacterized protein
YP_004054320.1	KEGG: amr:AM1_2252 hypothetical protein; SPTR: Fumarate hydratase
YP_004054321.1	COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056: IPR006175; KEGG: chu:CHU_3374 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: uncharacterized protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_004054322.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006108; KEGG: cpi:Cpin_0943 3-hydroxyacyl-CoA dehydrogenase domain protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; SPTR: 3-hydroxyacyl-CoA dehydrogenase domain protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YP_004054323.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006095: IPR014362: IPR006097: IPR006096; KEGG: rmr:Rmar_2129 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; SPTR: Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004054324.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: rbi:RB2501_11652 amidohydrolase family enzyme; PFAM: amidohydrolase; SPTR: Amidohydrolase family enzyme; PFAM: Amidohydrolase family
YP_004054325.1	InterPro IPR019563; KEGG: gfo:GFO_3444 alpha-glucosidase; PFAM: Glycoside hydrolase 97; SPTR: Alpha-glucosidase; PFAM: Glycoside hydrolase 97
YP_004054326.1	InterPro IPR013217; KEGG: gfo:GFO_1611 SAM-dependent methyltransferase; PFAM: Methyltransferase type 12; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004054327.1	COGs: COG3424 naringenin-chalcone synthase; InterPro IPR011141: IPR001099: IPR012328; KEGG: llo:LLO_1607 naringenin-chalcone synthase; PFAM: chalcone and stilbene synthase domain protein; SPTR: Possible chalcone synthase; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain
YP_004054328.1	InterPro IPR000537; KEGG: dol:Dole_2097 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: uncharacterized protein; PFAM: UbiA prenyltransferase family
YP_004054329.1	KEGG: phe:Phep_0972 hypothetical protein; SPTR: uncharacterized protein
YP_004054330.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR000846; KEGG: bmd:BMD_0685 NAD dependent epimerase/dehydratase; PFAM: dihydrodipicolinate reductase; SPTR: NAD dependent epimerase/dehydratase; PFAM: NmrA-like family
YP_004054331.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: dfe:Dfer_4044 DNA repair protein RecO; SPTR: DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_004054332.1	KEGG: chu:CHU_3302 surface antigen; SPTR: uncharacterized protein
YP_004054333.1	COGs: COG1435 Thymidine kinase; InterPro IPR001267: IPR020633; KEGG: sli:Slin_5162 thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; PFAM: Thymidine kinase
YP_004054334.1	COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: lic:LIC12506 adenylate/guanylate cyclase; PFAM: ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004054335.1	KEGG: chu:CHU_3303 hypothetical protein; SPTR: uncharacterized protein
YP_004054336.1	COGs: COG3487 Uncharacterized iron-regulated protein; InterPro IPR018976; KEGG: dac:Daci_1525 iron-regulated protein; PFAM: Peptidase M75, Imelysin; SPTR: uncharacterized protein; PFAM: Imelysin
YP_004054337.1	COGs: COG3488 thiol oxidoreductase; InterPro IPR009056: IPR010538; KEGG: chu:CHU_0667 thiol oxidoreductase; PFAM: protein of unknown function DUF1111; SPTR: Thiol oxidoreductase; PFAM: Protein of unknown function (DUF1111)
YP_004054338.1	COGs: COG3489 periplasmic lipoprotein; InterPro IPR018976; KEGG: chu:CHU_0310 hypothetical protein; PFAM: Peptidase M75, Imelysin; SPTR: uncharacterized protein; PFAM: Imelysin
YP_004054339.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR011923: IPR001182: IPR018365; KEGG: chu:CHU_3304 rod shape-determining protein; PFAM: cell cycle protein; SPTR: Rod shape-determining protein; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_004054340.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790: IPR005311: IPR001460; KEGG: aas:Aasi_0246 hypothetical protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2 (PBP-2); TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_004054341.1	KEGG: chu:CHU_3306 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: rod shape-determining protein MreD
YP_004054342.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR005223: IPR007221; KEGG: chu:CHU_3307 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_004054343.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: chu:CHU_3308 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_004054344.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695: IPR011607: IPR013982; KEGG: chu:CHU_3309 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_004054345.1	KEGG: mvn:Mevan_0947 small GTP-binding protein; SPTR: uncharacterized protein
YP_004054346.1	COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099: IPR005913: IPR001509: IPR013549; KEGG: sli:Slin_6071 domain of unknown function DUF1731; PFAM: domain of unknown function DUF1731; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777
YP_004054347.1	KEGG: tye:THEYE_A1993 chromosome segregation SMC protein, putative; SPTR: Chromosome segregation SMC protein, putative
YP_004054348.1	KEGG: cat:CA2559_08626 membrane associated hydrolase; SPTR: uncharacterized protein
YP_004054349.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209: IPR010259; KEGG: hoh:Hoch_5312 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; SPTR: Alkaline serine protease; PFAM: Peptidase inhibitor I9; Subtilase family
YP_004054350.1	InterPro IPR000014; KEGG: azo:azo3685 hybrid sensor and regulator protein; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_004054351.1	KEGG: mmb:Mmol_1245 hypothetical protein; SPTR: Predicted membrane protein
YP_004054352.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR003095; KEGG: drm:Dred_2495 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein dnaJ; PFAM: DnaJ domain
YP_004054353.1	SPTR: uncharacterized protein
YP_004054354.1	InterPro IPR000834; KEGG: cat:CA2559_07966 hypothetical protein; PFAM: peptidase M14 carboxypeptidase A; SPTR: uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_004054355.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR014014: IPR011545: IPR 014001: IPR000629; KEGG: rbi:RB2501_00561 DEAD/DEAH box helicase-like protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase-like protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004054356.1	COGs: COG4922 conserved hypothetical protein; KEGG: fjo:Fjoh_4696 hypothetical protein; SPTR: uncharacterized protein
YP_004054358.1	InterPro IPR001789; KEGG: lbl:LBL_0269 receiver protein of a two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Receiver protein of a two-component response regulator; PFAM: Response regulator receiver domain
YP_004054359.1	COGs: COG0784 FOG: CheY-like receiver; InterPro IPR000014: IPR001789; KEGG: zpr:ZPR_1259 PAS/PAC sensor signal transduction histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004054360.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: nde:NIDE1492 CheY-like response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator; PFAM: Response regulator receiver domain
YP_004054361.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR005467: IPR000700: IPR004358: IPR 013655: IPR013767: IPR003661: IPR003594: IPR001610: IPR003018; KEGG: geo:Geob_3565 multi-sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; GAF domain protein; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004054362.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: chu:CHU_0057 lipoprotein; PFAM: NLP/P60 protein; SPTR: Probable lipoprotein; PFAM: NlpC/P60 family
YP_004054363.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR016166: IPR006094: IPR004113; KEGG: fps:FP0574 (S)-2-hydroxy-acid oxidase; PFAM: FAD linked oxidase domain protein; SPTR: (S)-2-hydroxy-acid oxidase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_004054364.1	InterPro IPR001647; KEGG: cat:CA2559_06485 hypothetical protein; PFAM: regulatory protein TetR; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family
YP_004054365.1	COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439: IPR017940; KEGG: rbi:RB2501_08265 HlyB/MsbA family ABC transporter; SPTR: ABC transporter; PFAM: ABC transporter transmembrane region
YP_004054366.1	COGs: COG1566 Multidrug resistance efflux pump; KEGG: zpr:ZPR_2947 outer membrane efflux protein; SPTR: uncharacterized protein
YP_004054367.1	COGs: COG1538 Outer membrane protein; KEGG: cat:CA2559_06470 hypothetical protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004054368.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426: IPR017932: IPR000583: IPR001962; KEGG: chu:CHU_0058 asparagine synthase (glutamine-hydrolysing); PFAM: asparagine synthase; glutamine amidotransferase class-II; SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Domain of unknown function (DUF1933); TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_004054369.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: sun:SUN_1408 cation efflux system protein CzcD; PFAM: cation efflux protein; SPTR: Cobalt/zinc/cadmium cation efflux pump protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004054370.1	COGs: COG2936 acyl esterase; InterPro IPR005674: IPR013736; KEGG: rbi:RB2501_05125 alpha-amino acid ester hydrolase; PFAM: X-Pro dipeptidyl-peptidase domain protein; SPTR: Glutaryl-7-ACA acylase; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family
YP_004054371.1	COGs: COG4181 ABC-type transport system involved in lysophospholipase L1 biosynthesis ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: rbi:RB2501_11622 probable ATP-binding component of ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004054372.1	COGs: COG3127 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component; InterPro IPR003838; KEGG: sli:Slin_6498 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Efflux ABC transporter, permease protein; PFAM: Predicted permease
YP_004054373.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: sli:Slin_3138 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004054374.1	KEGG: mei:Msip34_2576 hypothetical protein; SPTR: uncharacterized protein
YP_004054375.1	COGs: COG2020 protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: chy:CHY_1640 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: uncharacterized protein; PFAM: NnrU protein
YP_004054376.1	KEGG: lic:LIC10670 hypothetical protein; SPTR: uncharacterized protein
YP_004054377.1	KEGG: gfo:GFO_1754 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF88
YP_004054378.1	KEGG: sdn:Sden_0777 hypothetical protein; SPTR: uncharacterized protein
YP_004054380.1	InterPro IPR011701; KEGG: gfo:GFO_2207 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_004054381.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198; KEGG: spu:761956 similar to LOC407663 protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004054382.1	KEGG: fph:Fphi_1000 cytochrome bd-II terminal oxidase subunit I; SPTR: GF15470
YP_004054383.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: chu:CHU_2455 glucosyltransferase-S; SPTR: uncharacterized protein; PFAM: MORN repeat variant
YP_004054384.1	COGs: COG2759 Formyltetrahydrofolate synthetase; InterPro IPR000559; KEGG: dba:Dbac_3185 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: Formate--tetrahydrofolate ligase; PFAM: Formate--tetrahydrofolate ligase
YP_004054385.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: coc:Coch_0006 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: TRNA/rRNA methyltransferase; PFAM: SpoU rRNA Methylase family
YP_004054386.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR005748: IPR007695: IPR007860: IPR007696: IPR 007861: IPR000432; KEGG: dfe:Dfer_2983 DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_004054387.1	InterPro IPR000014: IPR000700; KEGG: mev:Metev_0453 signal transduction histidine kinase; SPTR: Signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_004054388.1	InterPro IPR011652; KEGG: str:Sterm_2247 hypothetical protein; PFAM: MORN variant repeat-containing protein; SPTR: uncharacterized protein
YP_004054389.1	KEGG: fba:FIC_01633 hypothetical protein; SPTR: uncharacterized protein
YP_004054390.1	KEGG: fba:FIC_01633 hypothetical protein; SPTR: uncharacterized protein
YP_004054391.1	COGs: COG1398 Fatty-acid desaturase; InterPro IPR015876: IPR005804; KEGG: cpi:Cpin_3312 stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase; PRIAM: Stearoyl-CoA 9-desaturase; SPTR: Stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase
YP_004054392.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR014189: IPR013154: IPR013149; KEGG: ote:Oter_0170 PIG3 family NAD(P)H quinone oxidoreductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family
YP_004054393.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: cat:CA2559_03805 hypothetical protein; PFAM: surface antigen (D15); SPTR: uncharacterized protein; PFAM: Surface antigen
YP_004054394.1	InterPro IPR007452; KEGG: zpr:ZPR_2082 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_004054395.1	InterPro IPR007712; KEGG: fjo:Fjoh_2487 plasmid stabilization system protein; PFAM: plasmid stabilization system; SPTR: uncharacterized protein; PFAM: Plasmid stabilisation system protein
YP_004054396.1	KEGG: ptm:GSPATT00003462001 hypothetical protein; SPTR: uncharacterized protein
YP_004054397.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155: IPR020617; KEGG: bpt:Bpet0885 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; PRIAM: Propanoyl-CoA C-acyltransferase; SPTR: 3-ketoacyl-CoA thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain
YP_004054398.1	InterPro IPR017936: IPR000866; KEGG: cat:CA2559_02625 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: Redoxin
YP_004054399.1	KEGG: gfo:GFO_1931 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_004054400.1	COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035: IPR019793; KEGG: phe:Phep_0187 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: uncharacterized protein; PFAM: von Willebrand factor; von Willebrand factor type A domain; Domain of unknown function (DUF3520)
YP_004054401.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: cpi:Cpin_0929 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase ECF family sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004054402.1	InterPro IPR006260; KEGG: cpi:Cpin_0930 TonB family protein; PFAM: TonB domain; SPTR: TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004054403.1	COGs: COG0178 Excinuclease ATPase subunit; KEGG: gfo:GFO_1943 UvrABC system protein A-like; SPTR: UvrABC system protein A-like
YP_004054404.1	COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: rba:RB11201 response regulator rcp1; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator rcp1; PFAM: Response regulator receiver domain
YP_004054405.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR005467: IPR000700: IPR004358: IPR 003018: IPR013655: IPR013656: IPR013767: IPR003661: IPR003594:I PR001610: IPR018247; KEGG: mac:MA1270 sensory transduction histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004054406.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439: IPR017871; KEGG: gfo:GFO_1943 UvrABC system protein A-like; PFAM: ABC transporter related; SPTR: UvrABC system protein A-like; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004054407.1	KEGG: fjo:Fjoh_2186 transposase IS200-family protein; SPTR: Transposase IS200-family protein; PFAM: Transposase IS200 like
YP_004054408.1	KEGG: pfh:PFHG_02553 conserved hypothetical protein; SPTR: TonB-dependent receptor
YP_004054409.1	KEGG: pfh:PFHG_01476 erythrocyte membrane-associated antigen; SPTR: Predicted protein
YP_004054410.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005225: IPR002127: IPR000795: IPR005517: IPR 000640; KEGG: pjd:Pjdr2_5938 small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Tetracycline resistance protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004054411.1	SPTR: uncharacterized protein
YP_004054412.1	KEGG: lbl:LBL_2790 hypothetical protein; SPTR: uncharacterized protein
YP_004054413.1	KEGG: mmi:MMAR_2940 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3179)
YP_004054414.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: rrs:RoseRS_4381 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004054415.1	COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728: IPR010918; KEGG: tro:trd_0023 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; SPTR: Hydrogenase expression/formation factor related protein; PFAM: AIR synthase related protein, C-terminal domain
YP_004054416.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: tvo:TVN0508 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; PRIAM: Thiamine-phosphate diphosphorylase; SPTR: Thiamin-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_004054417.1	InterPro IPR005651; KEGG: mbu:Mbur_1284 hypothetical protein; PFAM: protein of unknown function DUF343; SPTR: uncharacterized protein; PFAM: Trm112p-like protein
YP_004054418.1	KEGG: mar:MAE_61300 hypothetical protein; SPTR: uncharacterized protein
YP_004054419.1	KEGG: ctt:CtCNB1_2613 hypothetical protein; SPTR: uncharacterized protein
YP_004054420.1	KEGG: ctt:CtCNB1_2613 hypothetical protein; SPTR: uncharacterized protein
YP_004054421.1	KEGG: cma:Cmaq_1081 SMC domain-containing protein; SPTR: SMC domain protein
YP_004054422.1	KEGG: bvu:BVU_3214 hypothetical protein; SPTR: uncharacterized protein
YP_004054423.1	KEGG: rbi:RB2501_09420 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004054424.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808: IPR000595; KEGG: zpr:ZPR_1791 transcriptional regulator, Crp family protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; SPTR: Transcriptional regulator, Crp family protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004054425.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR018967: IPR002932: IPR006622; KEGG: swp:swp_0971 glutamate synthase domain protein; PFAM: ferredoxin-dependent glutamate synthase; Iron sulphur-containing domain, CDGSH-type; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase domain protein; PFAM: Iron-binding zinc finger CDGSH type; Conserved region in glutamate synthase
YP_004054426.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: gfo:GFO_1136 cyclic nucleotide-binding domain-containing protein; PFAM: cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_004054427.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: hmg:100197617 similar to peroxisomal enoyl-coenzyme A hydratase-like protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004054428.1	InterPro IPR019883: IPR004360; KEGG: cat:CA2559_09323 glyoxalase family protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase family protein; TIGRFAM: lactoylglutathione lyase family protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase family protein
YP_004054429.1	COGs: COG0693 intracellular protease/amidase; InterPro IPR002818; KEGG: cat:CA2559_10123 ThiJ/PfpI; PFAM: ThiJ/PfpI domain-containing protein; SPTR: ThiJ/PfpI; PFAM: DJ-1/PfpI family
YP_004054430.1	COGs: COG2130 NADP-dependent oxidoreductase; InterPro IPR013149; KEGG: cat:CA2559_11258 YfmJ; PFAM: Alcohol dehydrogenase zinc-binding domain protein; SPTR: YfmJ; PFAM: Zinc-binding dehydrogenase
YP_004054431.1	KEGG: hch:HCH_01548 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004054432.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR001412: IPR002364; KEGG: amr:AM1_6234 zinc-binding oxidoreductase, putative; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: zinc-binding oxidoreductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004054433.1	KEGG: pmt:PMT1944 CPA2 family Na+/H+ antiporter; SPTR: transporter
YP_004054434.1	COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: bpf:BpOF4_07485 hypothetical protein; PFAM: Protein of unknown function DUF2196; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein
YP_004054435.1	InterPro IPR014922; KEGG: lbf:LBF_0452 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004054436.1	COGs: COG3590 metalloendopeptidase; InterPro IPR018497: IPR008753; KEGG: zpr:ZPR_3541 metalloendopeptidase PepO; PFAM: peptidase M13; Peptidase M13, neprilysin-like; PRIAM: Neprilysin; SPTR: Metalloendopeptidase PepO; PFAM: Peptidase family M13
YP_004054437.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863: IPR001431; KEGG: pdi:BDI_0963 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: Peptidase, M16 family protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004054438.1	KEGG: bfs:BF2812 hypothetical protein; SPTR: exported protein
YP_004054439.1	KEGG: cat:CA2559_04900 biopolymer transport protein; SPTR: uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family
YP_004054440.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: gfo:GFO_2163 two-component system sensor histidine kinase; PFAM: histidine kinase internal region; SPTR: two component system, sensor protein; PFAM: Histidine kinase
YP_004054441.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: cpi:Cpin_7298 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004054442.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393: IPR002638; KEGG: chu:CHU_3729 nicotinate-nucleotide pyrophosphorylase [carboxylating]; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_004054443.1	KEGG: aas:Aasi_1341 hypothetical protein; SPTR: uncharacterized protein
YP_004054444.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376: IPR001555; KEGG: pdi:BDI_2826 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: uncharacterized protein; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_004054445.1	COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR017936: IPR013740; KEGG: gfo:GFO_0928 thiol-disulfide oxidoreductase; PFAM: Redoxin domain protein; SPTR: Thiol-disulfide oxidoreductase; PFAM: Redoxin
YP_004054446.1	KEGG: chu:CHU_1870 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054447.1	InterPro IPR013216; KEGG: chu:CHU_1869 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004054448.1	KEGG: cpi:Cpin_4430 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (COG2071)
YP_004054449.1	KEGG: chu:CHU_1867 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054450.1	COGs: COG2405 nucleic acid-binding protein contains PIN domain; KEGG: cts:Ctha_1342 nucleic acid-binding protein contains PIN domain-like protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF3368)
YP_004054451.1	KEGG: cch:Cag_0312 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0175)
YP_004054452.1	KEGG: sde:Sde_0054 adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: uncharacterized protein
YP_004054453.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002410: IPR000073; KEGG: sus:Acid_6005 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily
YP_004054454.1	KEGG: tan:TA12630 molecular chaperone; SPTR: uncharacterized protein
YP_004054455.1	KEGG: ava:Ava_1573 hypothetical protein; SPTR: Alr3752 protein
YP_004054456.1	COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: zpr:ZPR_3906 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Oligopeptidase A; SPTR: peptidyl-dipeptidase; PFAM: Peptidase family M3
YP_004054457.1	KEGG: mmw:Mmwyl1_4074 hypothetical protein; SPTR: Transcriptional regulator, putative; PFAM: Limonene-1,2-epoxide hydrolase catalytic domain
YP_004054458.1	KEGG: sfr:Sfri_2538 hypothetical protein; SPTR: uncharacterized protein
YP_004054459.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR005990: IPR000644: IPR018529: IPR001093: IPR 015875; KEGG: sli:Slin_1193 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_004054460.1	COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: tmt:Tmath_1896 carbon starvation protein CstA; PFAM: carbon starvation protein CstA; SPTR: Carbon starvation-induced protein; PFAM: Carbon starvation protein CstA
YP_004054461.1	KEGG: chu:CHU_3505 hypothetical protein; SPTR: Tetratricopeptide repeat domain protein
YP_004054462.1	KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: uncharacterized protein
YP_004054463.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: dfe:Dfer_3803 methyltransferase type 12; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004054464.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR004416: IPR002218: IPR020595; KEGG: chu:CHU_3502 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_004054465.1	COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036: IPR020549; KEGG: chu:CHU_3501 hypothetical protein; PFAM: protein of unknown function UPF0054; SPTR: metalloprotease ALPR1_01170; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family
YP_004054466.1	InterPro IPR003594; KEGG: chu:CHU_3500 anti-sigma regulatory factor; PFAM: ATPase ATP-binding protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004054467.1	COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054468.1	COGs: COG0708 Exonuclease III; InterProIPR000097: IPR004808: IPR005135: IPR020847: IPR 020848; KEGG: coc:Coch_1451 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_004054469.1	KEGG: sli:Slin_5517 hypothetical protein; SPTR: uncharacterized protein
YP_004054470.1	COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR004675: IPR003779; KEGG: zpr:ZPR_1132 carboxymuconolactone decarboxylase family protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: uncharacterized protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_004054471.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: aas:Aasi_1314 hypothetical protein; PFAM: phosphoribosyltransferase; SPTR: Competence protein; manually curated; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_004054472.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: sga:GALLO_1405 amino acid ABC transporter, amino acid-binding/permease protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004054473.1	KEGG: edi:EDI_339150 hypothetical protein; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein
YP_004054474.1	KEGG: nmc:NMC0895 ParA protein; SPTR: Plasmid partition protein ParF, putative; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004054475.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: cpi:Cpin_1600 nitroreductase; PFAM: nitroreductase; SPTR: Protein YdjA; PFAM: Nitroreductase family
YP_004054476.1	COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterPro IPR004529: IPR006195: IPR004188: IPR002319; KEGG: dfe:Dfer_4769 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: Phenylalanyl-tRNA synthetase alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_004054477.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108; KEGG: cpi:Cpin_0691 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004054478.1	InterPro IPR017941; KEGG: fps:FP2365 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054479.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006261: IPR006674: IPR003607; KEGG: fjo:Fjoh_1521 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PRIAM: dGTPase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative
YP_004054480.1	InterPro IPR022270; KEGG: srm:SRM_02436 conserved hypothetical protein, membrane; SPTR: uncharacterized protein; TIGRFAM: Beta-carotene 15,15'-monooxygenase, Brp/Blh family; TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family
YP_004054481.1	KEGG: gfo:GFO_3348 transcription elongation factor; SPTR: uncharacterized protein; PFAM: Transcription elongation factor, GreA/GreB, C-term
YP_004054482.1	KEGG: cat:CA2559_06315 hypothetical protein; SPTR: uncharacterized protein
YP_004054483.1	COGs: COG1171 Threonine dehydratase; InterPro IPR001926; KEGG: dfe:Dfer_2376 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: threonine dehydratase; PFAM: Pyridoxal-phosphate dependent enzyme
YP_004054484.1	KEGG: sli:Slin_0763 hypothetical protein; SPTR: Lipoprotein, putative
YP_004054485.1	InterPro IPR001789; KEGG: dfe:Dfer_2534 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator; PFAM: Response regulator receiver domain
YP_004054486.1	KEGG: tet:TTHERM_00035470 hypothetical protein; SPTR: uncharacterized protein
YP_004054487.1	KEGG: bth:BT_3749 anti-sigma factor; SPTR: Anti-sigma factor; PFAM: FecR protein
YP_004054488.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: zpr:ZPR_0699 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004054489.1	KEGG: cts:Ctha_2510 conserved hypothetical protein; signal peptide; SPTR: Cytochrome c family protein, putative; PFAM: Protein of unknown function (DUF3365)
YP_004054490.1	InterPro IPR003660: IPR003018; KEGG: lbl:LBL_1299 sensor histidine kinase and response regulator of a two component complex; PFAM: histidine kinase HAMP region domain protein; GAF domain protein; SMART: GAF domain protein; SPTR: GAF Sensor Hybrid Histidine Kinase, putative; PFAM: HAMP domain; GAF domain
YP_004054491.1	KEGG: dat:HRM2_45180 hypothetical protein; SPTR: uncharacterized protein
YP_004054492.1	COGs: COG0216 Protein chain release factor A; InterPro IPR004373: IPR005139: IPR000352; KEGG: sli:Slin_4995 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_004054493.1	KEGG: chu:CHU_3705 hypothetical protein; SPTR: uncharacterized protein
YP_004054494.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090: IPR006089; KEGG: phe:Phep_0837 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004054495.1	KEGG: fjo:Fjoh_0804 hypothetical protein; SPTR: uncharacterized protein
YP_004054496.1	InterPro IPR001911: IPR018278; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_004054497.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: chu:CHU_3398 integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_004054498.1	COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: chu:CHU_3399 ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Sigma-54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_004054499.1	KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: Tetratricopeptide repeat domain protein
YP_004054500.1	KEGG: chu:CHU_0064 hypothetical protein; SPTR: Membrane protein, putative
YP_004054501.1	COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910: IPR000531: IPR010917; KEGG: gfo:GFO_2512 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004054502.1	InterPro IPR011020; KEGG: gfo:GFO_2513 vitamin K-dependent gamma-carboxylase; SMART: HTTM domain protein; SPTR: Gamma-glutamyl carboxylase-like protein; PFAM: Vitamin K-dependent gamma-carboxylase
YP_004054503.1	InterPro IPR018976; KEGG: cat:CA2559_08516 hypothetical protein; PFAM: Peptidase M75, Imelysin; SPTR: uncharacterized protein; PFAM: Imelysin
YP_004054504.1	KEGG: fps:FP1486 hypothetical protein; SPTR: uncharacterized protein
YP_004054505.1	COGs: COG0114 Fumarase; InterPro IPR005677: IPR000362: IPR018951: IPR020557; KEGG: coc:Coch_2054 fumarate hydratase; PFAM: fumarate lyase; Fumarase C-like; SPTR: Fumarate hydratase, class II; TIGRFAM: fumarate hydratase, class II; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II
YP_004054506.1	KEGG: chu:CHU_3666 hypothetical protein; SPTR: uncharacterized protein
YP_004054507.1	COGs: COG0787 Alanine racemase; InterProIPR000821: IPR000713: IPR013221: IPR001608: IPR 011079; KEGG: chu:CHU_3724 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: alanine racemase domain protein; Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Mur ligase domain protein/alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Mur ligase family, catalytic domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase
YP_004054509.1	KEGG: bfs:BF1071 hypothetical protein; SPTR: uncharacterized protein
YP_004054510.1	COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: dfe:Dfer_1523 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; manually curated; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_004054511.1	COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: dfe:Dfer_4966 ABC transporter permease; SPTR: ABC transporter permease
YP_004054512.1	COGs: COG4152 ABC transporter ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: dfe:Dfer_4965 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004054513.1	KEGG: dae:Dtox_3786 GAF sensor hybrid histidine kinase; SPTR: PAS
YP_004054514.1	InterPro IPR007372; KEGG: gfo:GFO_1427 secreted protein; PFAM: YceI family protein; SPTR: Secreted protein; PFAM: YceI-like domain
YP_004054515.1	InterPro IPR022272; KEGG: fba:FIC_01480 hypothetical protein; SPTR: uncharacterized protein
YP_004054516.1	InterPro IPR007372; KEGG: zpr:ZPR_0533 secreted protein; PFAM: YceI family protein; SPTR: uncharacterized protein; PFAM: YceI-like domain
YP_004054517.1	KEGG: gfo:GFO_3552 membrane protein; SPTR: uncharacterized protein
YP_004054518.1	COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: gtn:GTNG_0162 DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix
YP_004054519.1	COGs: COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR006240: IPR000760: IPR020583; KEGG: chu:CHU_0638 sulfite synthesis pathway protein; PFAM: inositol monophosphatase; SPTR: Sulfite synthesis pathway protein; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase family; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial
YP_004054520.1	COGs: COG0529 AdenylyLSUlfate kinase and related kinase; InterPro IPR002891; KEGG: chu:CHU_0637 adenylyLSUlfate kinase; PFAM: adenylyLSUlfate kinase; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: adenylyLSUlfate kinase; PFAM: AdenylyLSUlphate kinase; TIGRFAM: adenylyLSUlfate kinase (apsK)
YP_004054521.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR011784: IPR002500; KEGG: chu:CHU_0636 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase; SPTR: Sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit
YP_004054522.1	InterPro IPR012657; KEGG: fps:FP2266 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004054523.1	COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR005225: IPR011779: IPR000795: IPR004161; KEGG: chu:CHU_0635 sulfate adenylyltransferase subunit 1; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain
YP_004054524.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: phe:Phep_3046 regulatory protein RecX; PFAM: regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family
YP_004054525.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: cat:CA2559_02090 hypothetical protein; PFAM: aminotransferase class V; SPTR: Aminotransferase, class V; PFAM: Aminotransferase class-V
YP_004054526.1	COGs: COG3408 Glycogen debranching protein; KEGG: sli:Slin_6094 glycogen debranching protein-like protein; SPTR: Glycogen debranching protein-like protein; PFAM: Protein of unknown function, DUF608
YP_004054527.1	KEGG: chu:CHU_0055 hypothetical protein; SPTR: uncharacterized protein
YP_004054528.1	InterPro IPR001789; KEGG: chu:CHU_0054 response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS); PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator of ato, ornithine decarboxylase antizyme (Sensor ATOS); PFAM: Response regulator receiver domain
YP_004054529.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR016160; KEGG: cat:CA2559_02440 probable piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004054530.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR011782: IPR001254: IPR001940; KEGG: chu:CHU_0052 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Serine protease; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004054531.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: phe:Phep_2899 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_004054532.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308: IPR015803: IPR015273; KEGG: dfe:Dfer_3906 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_004054533.1	InterPro IPR003728: IPR020790; KEGG: phe:Phep_0139 protein of unknown function DUF150; PFAM: protein of unknown function DUF150; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_004054534.1	COGs: COG0195 Transcription elongation factor; InterPro IPR004088: IPR003029: IPR010213: IPR013735; KEGG: chu:CHU_3421 transcription elongation factor NusA; PFAM: NusA domain-containing protein; SPTR: Transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: KH domain; NusA N-terminal domain; TIGRFAM: transcription termination factor NusA
YP_004054535.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178: IPR005225: IPR006847: IPR000795: IPR 004161; KEGG: chu:CHU_3422 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_004054536.1	KEGG: fps:FP0287 hypothetical protein; SPTR: uncharacterized protein
YP_004054537.1	KEGG: fps:FP0285 hypothetical protein; SPTR: uncharacterized protein; PFAM: serine esterase (DUF676)
YP_004054538.1	InterPro IPR013247; KEGG: tde:TDE2390 hypothetical protein; PFAM: SH3 type 3 domain protein; SPTR: uncharacterized protein; PFAM: Bacterial SH3 domain
YP_004054539.1	InterPro IPR011944; KEGG: sru:SRU_0539 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein
YP_004054540.1	InterPro IPR006626; KEGG: dfe:Dfer_1942 hypothetical protein; SPTR: uncharacterized protein
YP_004054541.1	KEGG: rbi:RB2501_00576 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_004054543.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_0431 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004054544.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR003710: IPR013332: IPR013752; KEGG: hmo:HM1_3023 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_004054545.1	KEGG: rbi:RB2501_12087 hypothetical protein; SPTR: uncharacterized protein
YP_004054546.1	KEGG: cat:CA2559_08646 hypothetical protein; SPTR: uncharacterized protein
YP_004054547.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_4568 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor domain protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004054548.1	COGs: COG0308 Aminopeptidase N; KEGG: rbi:RB2501_02515 Zn-dependent aminopeptidase; SPTR: aminopeptidase
YP_004054549.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002938: IPR003042; KEGG: sli:Slin_3185 monooxygenase FAD-binding protein; PFAM: monooxygenase FAD-binding; SPTR: FAD dependent oxidoreductase, putative; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004054550.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: chu:CHU_3675 membrane protein; SPTR: Membrane protein, putative; PFAM: MMPL family
YP_004054551.1	COGs: COG0060 Isoleucyl-tRNA synthetase; InterPro IPR002301: IPR002300: IPR013155: IPR015905; KEGG: chu:CHU_3676 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase
YP_004054552.1	COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: sli:Slin_5729 lipoprotein signal peptidase-like protein; PFAM: peptidase A8 signal peptidase II; SPTR: signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_004054553.1	InterPro IPR010617; KEGG: sde:Sde_3064 transglutaminase-like; PFAM: protein of unknown function DUF1211; SPTR: Transglutaminase-like protein; PFAM: Protein of unknown function (DUF1211)
YP_004054554.1	InterPro IPR019734: IPR013026; KEGG: cac:CA_C0415 TPR repeat-containing protein; SPTR: TPR-repeat-containing protein
YP_004054555.1	COGs: COG1295 membrane protein; InterPro IPR004664: IPR017039; KEGG: fjo:Fjoh_2469 ribonuclease BN; PFAM: ribonuclease BN; SPTR: ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_004054556.1	InterPro IPR001478: IPR001969; KEGG: zpr:ZPR_4398 asp_protease; SMART: PDZ/DHR/GLGF domain protein; SPTR: Asp_protease; PFAM: PDZ domain (Also known as DHR or GLGF)
YP_004054557.1	KEGG: llo:LLO_1627 hypothetical protein; SPTR: BfpU
YP_004054558.1	InterPro IPR003675; KEGG: zpr:ZPR_4397 metal-dependent membrane protease; PFAM: Abortive infection protein; SPTR: metal-dependent membrane protease; PFAM: CAAX amino terminal protease family
YP_004054559.1	COGs: COG3228 conserved hypothetical protein; InterPro IPR010384; KEGG: chu:CHU_1809 hypothetical protein; PFAM: protein of unknown function DUF980; SPTR: uncharacterized protein; PFAM: Phosphoenolpyruvate:glucose-phosphotransferase regulator
YP_004054560.1	COGs: COG3387 Glucoamylase and related glycosyl hydrolase; InterPro IPR011613; KEGG: cpi:Cpin_4023 glycoside hydrolase 15-related; PFAM: glycoside hydrolase 15-related; SPTR: Glycoside hydrolase; PFAM: Glycosyl hydrolases family 15
YP_004054561.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: phe:Phep_3007 peptidase M28; PFAM: peptidase M28; SPTR: uncharacterized protein; PFAM: Peptidase family M28
YP_004054562.1	KEGG: vfm:VFMJ11_2695 threonine dehydratase; SPTR: NTPase
YP_004054563.1	COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: cpi:Cpin_0407 protein of unknown function DUF541; PFAM: protein of unknown function DUF541; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF541)
YP_004054564.1	COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: cpi:Cpin_1362 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Possible enoyl-CoA hydratase; PFAM: MaoC like domain
YP_004054566.1	InterPro IPR007484; KEGG: sli:Slin_5551 peptidase M28; PFAM: peptidase M28; SPTR: uncharacterized protein; PFAM: Peptidase family M28
YP_004054567.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: sli:Slin_3485 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: Prenyltransferase 2; PFAM: UbiA prenyltransferase family
YP_004054568.1	COGs: COG5495 conserved hypothetical protein; InterPro IPR018931; KEGG: sli:Slin_6619 hypothetical protein; PFAM: Domain of unknown function DUF2520; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2520); Rossmann-like domain
YP_004054569.1	COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541: IPR003567; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c biogenesis factor; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF
YP_004054570.1	KEGG: dfe:Dfer_5081 hypothetical protein; SPTR: Cytochrome c-type biogenesis protein CcmE, putative; PFAM: CcmE
YP_004054571.1	KEGG: sli:Slin_1446 hypothetical protein; SPTR: uncharacterized protein
YP_004054572.1	InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Heme exporter protein C, putative; PFAM: Cytochrome C assembly protein
YP_004054573.1	COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: dfe:Dfer_5084 cytochrome c-type biogenesis protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB; PFAM: CcmB protein
YP_004054574.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: mma:MM_1166 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_004054575.1	KEGG: cat:CA2559_02905 hypothetical protein; SPTR: uncharacterized protein
YP_004054576.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: cpi:Cpin_1511 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_004054577.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: phe:Phep_4022 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_004054578.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003593: IPR003439: IPR017940: IPR001140: IPR 017871; KEGG: chu:CHU_3530 ABC transporter, ATP-binding/permease; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004054579.1	KEGG: zpr:ZPR_1875 membrane or secreted protein; SPTR: uncharacterized protein
YP_004054580.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: hau:Haur_0016 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family
YP_004054581.1	KEGG: fjo:Fjoh_4762 hypothetical protein; SPTR: uncharacterized protein; PFAM: LETM1-like protein
YP_004054582.1	InterPro IPR006162; KEGG: aas:Aasi_0778 hypothetical protein; SPTR: uncharacterized protein
YP_004054583.1	KEGG: chu:CHU_3690 hypothetical protein; SPTR: uncharacterized protein
YP_004054584.1	InterPro IPR008258; KEGG: gfo:GFO_1070 membrane-bound lytic murein transglycosylase; PFAM: Lytic transglycosylase catalytic; SPTR: membrane-bound lytic murein transglycosylase; PFAM: Transglycosylase SLT domain
YP_004054585.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: sli:Slin_1915 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_004054586.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: cpi:Cpin_2595 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_004054587.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003593: IPR003439: IPR017940: IPR001140: IPR 017871; KEGG: sli:Slin_5540 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: HlyB/MsbA family ABC transporter; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: ABC transporter, permease/ATP-binding protein
YP_004054588.1	COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: gfo:GFO_1278 thiol:disulfide interchange protein DsbD 1; PFAM: cytochrome c biogenesis protein transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Thiol:disulfide interchange protein dsbD, putative; PFAM: Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255
YP_004054589.1	KEGG: dfe:Dfer_1145 hypothetical protein; SPTR: uncharacterized protein
YP_004054590.1	COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: dge:Dgeo_1745 hypothetical protein; PFAM: protein of unknown function DUF427; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF427)
YP_004054591.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037: IPR013099; KEGG: glo:Glov_0875 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein; SPTR: Potassium uptake protein, TrkA family; PFAM: TrkA-N domain; Ion channel; TrkA-C domain
YP_004054592.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR000412: IPR013525: IPR013526; KEGG: cts:Ctha_2520 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter
YP_004054593.1	COGs: COG0527 Aspartokinase; InterPro IPR001341: IPR001048: IPR018042; KEGG: cpi:Cpin_6874 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase
YP_004054594.1	COGs: COG0054 Riboflavin synthase beta-chain; InterPro IPR002180; KEGG: sli:Slin_5633 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; SPTR: Riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004054595.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: sli:Slin_5634 tetratricopeptide TPR_2 repeat protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004054596.1	COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017597: IPR001017: IPR020557; KEGG: chu:CHU_3718 pyruvate dehydrogenase E1 component alpha subunit; PFAM: dehydrogenase E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit
YP_004054597.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR001238: IPR003395: IPR018078; KEGG: sli:Slin_5508 DNA replication and repair protein RecF; PFAM: SMC domain protein; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_004054598.1	InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF721)
YP_004054599.1	COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: gfo:GFO_1948 GDSL-like lipase/acylhydrolase; PFAM: lipolytic protein G-D-S-L family; SPTR: GDSL-like lipase/acylhydrolase domain protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004054600.1	COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: sli:Slin_0076 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; SPTR: SMP-30/Gluconolaconase/LRE domain protein; manually curated; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_004054601.1	InterPro IPR019619; KEGG: gfo:GFO_3452 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004054602.1	COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: cpi:Cpin_6952 DinB family protein; PFAM: DinB family protein; SPTR: Nuclease inhibitor; PFAM: DinB family
YP_004054603.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020058: IPR020060: IPR001412; KEGG: chu:CHU_3373 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_004054604.1	KEGG: sli:Slin_4892 hypothetical protein; SPTR: uncharacterized protein
YP_004054605.1	COGs: COG2356 Endonuclease I; InterPro IPR003961: IPR000998: IPR007346; KEGG: fjo:Fjoh_4721 endonuclease I; PFAM: Endonuclease I; Fibronectin type III domain protein; MAM protein; SMART: Fibronectin type III domain protein; MAM protein; SPTR: surface protein; PFAM: MAM domain; Endonuclease I; Fibronectin type III domain
YP_004054606.1	COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR003337: IPR006379: IPR001830; KEGG: cpi:Cpin_4022 trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose-phosphatase; SPTR: Trehalose-6-phosphate synthase-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: trehalose-phosphatase; alpha,alpha-trehalose-phosphate synthase [UDP-forming]; HAD-superfamily hydrolase, subfamily IIB
YP_004054607.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: gfo:GFO_1424 4-hydroxybutyrate coenzyme A transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: 4-Hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain
YP_004054608.1	KEGG: ssp:SSP1213 DNA transport machinery protein; SPTR: uncharacterized protein
YP_004054609.1	KEGG: amr:AM1_A0270 hypothetical protein; SPTR: uncharacterized protein
YP_004054610.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR006005: IPR013027: IPR000759; KEGG: chu:CHU_3777 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADPH-dependent glutamate synthase, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit
YP_004054611.1	COGs: COG0069 Glutamate synthase domain 2; InterProIPR017932: IPR000583: IPR006982: IPR002932: IPR 002489; KEGG: chu:CHU_3776 glutamate synthase (NADH) large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase, large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II
YP_004054612.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: rbi:RB2501_01540 hypothetical protein; SPTR: uncharacterized protein; PFAM: Glucose / Sorbosone dehydrogenase
YP_004054613.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873: IPR020845; KEGG: chu:CHU_3595 long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase); PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase); PFAM: AMP-binding enzyme
YP_004054614.1	KEGG: gga:419107 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa; SPTR: Transcription initiation factor TFIID subunit 3
YP_004054615.1	COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: sli:Slin_6029 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_004054616.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: chu:CHU_3649 hypothetical protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: uncharacterized protein; PFAM: DHH family; DHHA1 domain
YP_004054617.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_6027 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004054618.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_4380 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004054619.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: rbi:RB2501_11232 peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004054620.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637: IPR020922; KEGG: bvu:BVU_1146 deoxyribonucleoside-triphosphatase; PFAM: Ham1 family protein; SPTR: Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_004054621.1	COGs: COG0572 Uridine kinase; InterPro IPR000764; KEGG: dfe:Dfer_4546 phosphoribulokinase/uridine kinase; SPTR: Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family
YP_004054622.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: cts:Ctha_1709 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: Potassium uptake protein KtrA; PFAM: TrkA-N domain; TrkA-C domain
YP_004054624.1	KEGG: bfs:BF1965 hypothetical protein; SPTR: uncharacterized protein
YP_004054625.1	KEGG: mru:mru_1713 ABC transporter permease; SPTR: Transcriptional regulator, LuxR family
YP_004054626.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sun:SUN_0283 patatin; PFAM: Patatin; SPTR: Serine protease; PFAM: Patatin-like phospholipase
YP_004054627.1	InterPro IPR013216; KEGG: cpi:Cpin_4275 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Membrane-associated protein, putative; PFAM: Methyltransferase domain
YP_004054628.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001610: IPR003661: IPR003594: IPR005467: IPR 000700: IPR000014: IPR013655: IPR004358; KEGG: chu:CHU_0317 sensor histidine kinase; PFAM: ATPase ATP-binding protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; PAC repeat-containing protein; SPTR: Two-component hybrid sensor and regulator, putative; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004054629.1	COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR006195: IPR002315: IPR002314: IPR004154; KEGG: sli:Slin_1692 glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; SPTR: Glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type
YP_004054630.1	InterPro IPR017936: IPR013766; KEGG: zpr:ZPR_2855 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin family protein; PFAM: Thioredoxin
YP_004054631.1	KEGG: coc:Coch_0769 hypothetical protein; SPTR: uncharacterized protein
YP_004054632.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: lga:LGAS_0529 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004054633.1	KEGG: abu:Abu_1080 sodium:phosphate cotransporter; SPTR: Sodium:phosphate cotransporter
YP_004054634.1	COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: zpr:ZPR_2426 NADH:quinone dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH:quinone dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004054635.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_0375 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: transmembrane sensor histidine kinase transcription regulator protein; PFAM: Histidine kinase
YP_004054636.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: cpi:Cpin_0374 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two-component system, regulatory protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004054637.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638: IPR004559: IPR007197: IPR010723; KEGG: sli:Slin_2843 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; manually curated; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase
YP_004054638.1	KEGG: chu:CHU_0166 outer membrane protein; SPTR: Outer membrane protein, OMP85 family, putative
YP_004054639.1	KEGG: sli:Slin_3228 hypothetical protein; SPTR: uncharacterized protein
YP_004054640.1	COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: chu:CHU_0169 uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Possible uroporphyrinogen-III synthase; manually curated; PFAM: Uroporphyrinogen-III synthase HemD
YP_004054641.1	InterPro IPR019861; KEGG: chu:CHU_0170 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004054642.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR019867: IPR005532; KEGG: chu:CHU_0171 gliding motility-related protein; PFAM: protein of unknown function DUF323; SPTR: Gliding motility-related protein; TIGRFAM: gliding motility-associated lipoprotein GldK; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK
YP_004054643.1	InterPro IPR019852; KEGG: chu:CHU_0172 gliding motility-related protein; SPTR: uncharacterized protein; TIGRFAM: gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL
YP_004054644.1	InterPro IPR019859; KEGG: aas:Aasi_0253 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM
YP_004054645.1	InterPro IPR019847; KEGG: aas:Aasi_1512 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: gliding motility associated protien GldN; TIGRFAM: gliding motility associated protien GldN
YP_004054646.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR000305: IPR001162: IPR004791; KEGG: aas:Aasi_0024 excinuclease ABC subunit C; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_004054647.1	COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264: IPR001460; KEGG: aas:Aasi_0981 hypothetical protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1A; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_004054648.1	InterPro IPR019734: IPR003107: IPR013026: IPR001440; KEGG: chu:CHU_0177 TPR repeat-containing gliding mobility protein; PFAM: hypothetical protein; SPTR: Gliding motility-related protein; TPR repeat-containing protein
YP_004054649.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: aas:Aasi_0690 hypothetical protein; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase family M23
YP_004054650.1	COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: aas:Aasi_0691 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF583
YP_004054651.1	KEGG: cat:CA2559_03030 hypothetical protein; SPTR: uncharacterized protein
YP_004054652.1	KEGG: gfo:GFO_3271 membrane protein; SPTR: uncharacterized protein
YP_004054653.1	COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: fjo:Fjoh_1055 ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_004054654.1	InterPro IPR002379: IPR000454: IPR020537; KEGG: fjo:Fjoh_1056 H+-transporting two-sector ATPase, C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: uncharacterized protein; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_004054655.1	COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR005864: IPR002146; KEGG: fps:FP2460 F0F1 ATP synthase subunit B; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_004054656.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711: IPR020781; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_004054657.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterProIPR005294: IPR004100: IPR000194: IPR000793: IPR 020003; KEGG: sli:Slin_6523 ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_004054658.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: sli:Slin_6524 ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_004054659.1	COGs: COG0517 FOG: CBS domain; InterPro IPR000644; KEGG: cat:CA2559_01920 inosine monophosphate dehydrogenase-related protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: CBS domain protein; PFAM: CBS domain
YP_004054660.1	KEGG: lbf:LBF_2597 methyltransferase/methylase; SPTR: methyltransferase; manually curated
YP_004054661.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: dfe:Dfer_4582 superfamily I DNA helicase; SPTR: Superfamily I DNA helicase
YP_004054662.1	KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: uncharacterized protein
YP_004054663.1	COGs: COG1514 2'-5' RNA ligase; KEGG: cyt:cce_3434 2',5' RNA ligase; SPTR: 2',5' RNA ligase; PFAM: Cyclic phosphodiesterase-like protein
YP_004054664.1	KEGG: chu:CHU_2286 hypothetical protein; SPTR: uncharacterized protein
YP_004054665.1	KEGG: chu:CHU_2285 hypothetical protein; SPTR: uncharacterized protein
YP_004054666.1	KEGG: dde:Dde_3046 hypothetical protein; SPTR: uncharacterized protein
YP_004054667.1	COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR011761: IPR005875: IPR003135; KEGG: chu:CHU_3733 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein
YP_004054668.1	COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: chu:CHU_3734 phosphoribosylaminoimidazole carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_004054669.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR019734: IPR003661: IPR003594: IPR005467: IPR 013026: IPR001440: IPR004358; KEGG: ttu:TERTU_0011 sensory box sensor histidine kinase/DNA-binding response regulator, AraC family; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; hypothetical protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004054670.1	KEGG: phe:Phep_0090 thiamine pyrophosphokinase; SPTR: Thiamine diphosphokinase
YP_004054671.1	InterPro IPR003154; KEGG: cat:CA2559_07475 S1/P1 nuclease; PFAM: S1/P1 nuclease; SPTR: S1/P1 Nuclease; PFAM: S1/P1 Nuclease
YP_004054672.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR014001: IPR001650: IPR001943: IPR014021: IPR 004807: IPR006935; KEGG: sli:Slin_3612 excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_004054673.1	COGs: COG3439 conserved hypothetical protein; InterPro IPR016796: IPR005180; KEGG: rbi:RB2501_04710 hypothetical protein; PFAM: protein of unknown function DUF302; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF302
YP_004054674.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR002550; KEGG: dsa:Desal_1538 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; SPTR: uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21
YP_004054675.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR019862: IPR002550: IPR005170; KEGG: sli:Slin_5985 gliding motility-associated protein GldE; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SPTR: Hemolysin-related protein, containing CBS domain; TIGRFAM: gliding motility-associated protein GldE; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; TIGRFAM: gliding motility-associated protein GldE
YP_004054676.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: chu:CHU_3685 single-stranded DNA binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004054677.1	COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265: IPR005760: IPR003651; KEGG: sli:Slin_5983 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase
YP_004054678.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: chu:CHU_3687 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein
YP_004054679.1	InterPro IPR019734: IPR013026; KEGG: dfe:Dfer_4434 hypothetical protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004054680.1	COGs: COG1530 Ribonuclease G and E; InterPro IPR004659: IPR003029: IPR019307; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_004054681.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594: IPR005467: IPR011123: IPR009386: IPR 004358; KEGG: chu:CHU_3029 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; Two component regulator three Y domain-containing protein; protein of unknown function DUF1043; SMART: ATPase ATP-binding protein; SPTR: Two-component hybrid sensor and regulator, putative; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004054682.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: fba:FIC_01328 signal transduction histidine kinase; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: Two-component sensor histidine kinase
YP_004054683.1	COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: sli:Slin_0649 ferrochelatase; PFAM: ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_004054684.1	InterPro IPR003018: IPR000014: IPR003660; KEGG: dae:Dtox_3786 GAF sensor hybrid histidine kinase; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; SMART: GAF domain protein; SPTR: Chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain
YP_004054685.1	COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR014133: IPR006050: IPR005101: IPR002081; KEGG: amr:AM1_2428 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; SPTR: Cryptochrome, DASH family; TIGRFAM: cryptochrome, DASH family; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family
YP_004054686.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652: IPR020861; KEGG: sli:Slin_5608 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_004054687.1	COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456: IPR004498; KEGG: dfe:Dfer_3738 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_004054688.1	KEGG: chu:CHU_3275 hypothetical protein; SPTR: uncharacterized protein
YP_004054689.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: dfe:Dfer_3741 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Possible beta-Ala-His dipeptidase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_004054690.1	COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837; KEGG: srm:SRM_02026 Na+/Ca2+-exchanging protein; PFAM: sodium/calcium exchanger membrane region; SPTR: Na+/Ca2+-exchanging protein; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_004054691.1	KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Membrane protein, putative
YP_004054692.1	COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: sli:Slin_0998 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_004054693.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: aas:Aasi_0365 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Releasing system transmembrane protein; PFAM: Predicted permease
YP_004054694.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR014021: IPR000330; KEGG: chu:CHU_3627 SNF2 family DNA/RNA helicase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Superfamily II DNA/RNA helicase, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_004054695.1	KEGG: gfo:GFO_3436 hypothetical protein; SPTR: uncharacterized protein
YP_004054696.1	InterPro IPR001647; KEGG: bha:BH1002 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator (TetR family); PFAM: Bacterial regulatory proteins, tetR family
YP_004054697.1	KEGG: dps:DP1785 hypothetical protein; SPTR: uncharacterized protein
YP_004054698.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: aco:Amico_1329 ABC transporter related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_004054699.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dps:DP1783 lipoprotein releasing system transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: Similar to lipoprotein releasing system transmembrane protein; PFAM: Predicted permease
YP_004054700.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dps:DP1782 lipoprotein releasing system transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: Related to lipoprotein releasing system transmembrane protein; PFAM: Predicted permease
YP_004054701.1	InterPro IPR022272; KEGG: dps:DP1781 hypothetical protein; SPTR: uncharacterized protein; PFAM: MucB/RseB family
YP_004054702.1	KEGG: tva:TVAG_420800 hypothetical protein; SPTR: uncharacterized protein
YP_004054703.1	COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500: IPR004785; KEGG: chu:CHU_3631 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_004054704.1	InterPro IPR001451; KEGG: fps:FP1134 sugar phosphate nucleotydyl transferase; PFAM: transferase hexapeptide repeat containing protein; SPTR: uncharacterized protein
YP_004054705.1	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: aas:Aasi_0758 hypothetical protein; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_004054706.1	KEGG: chu:CHU_0507 hypothetical protein; SPTR: uncharacterized protein
YP_004054707.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003593: IPR003439: IPR017940: IPR001140: IPR 017871; KEGG: aas:Aasi_0351 hypothetical protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: transport ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004054708.1	KEGG: xtr:613047 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10; SPTR: Ddx10 protein
YP_004054709.1	COGs: COG0279 Phosphoheptose isomerase; InterPro IPR004515: IPR001347: IPR020620; KEGG: asa:ASA_2783 phosphoheptose isomerase; PFAM: sugar isomerase (SIS); SPTR: Phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase
YP_004054710.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR003593: IPR004482: IPR000523: IPR001208; KEGG: sli:Slin_4052 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA; SPTR: Mg chelatase-like protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein
YP_004054711.1	KEGG: chu:CHU_2671 hypothetical protein; SPTR: uncharacterized protein
YP_004054712.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594: IPR005467: IPR011622: IPR011623: IPR 004358; KEGG: chu:CHU_2797 sensor kinase of Zn/Pb responsive two-component regulatory system; PFAM: Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Periplasmic Sensor Hybrid Histidine Kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; 7TMR-DISM extracellular 2; His Kinase A (phosphoacceptor) domain
YP_004054713.1	KEGG: cat:CA2559_01950 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family
YP_004054714.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: cat:CA2559_01945 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004054715.1	COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR020946: IPR000103: IPR013027; KEGG: zpr:ZPR_2618 monooxygenase; PFAM: Flavin-containing monooxygenase-like; SPTR: Monooxygenase; PFAM: Flavin-binding monooxygenase-like; Thi4 family
YP_004054716.1	COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706: IPR002657; KEGG: cyb:CYB_2365 anion:cation symporter (ACS) family protein; PFAM: Bile acid:sodium symporter; SPTR: Transporter, arsenical resistance-3 (ACR3) family; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein
YP_004054717.1	KEGG: cat:CA2559_00485 probable arsenate reductase; SPTR: Probable arsenate reductase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_004054718.1	KEGG: fjo:Fjoh_4420 hypothetical protein; SPTR: uncharacterized protein
YP_004054719.1	InterPro IPR001845; KEGG: gfo:GFO_2196 transcription regulator ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family
YP_004054720.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516: IPR001750: IPR003916; KEGG: pvi:Cvib_1257 monovalent cation/H+ antiporter subunit A; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YP_004054721.1	InterPro IPR007182; KEGG: rrs:RoseRS_2101 monovalent cation/H+ antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: Na+/H+ antiporter MnhB subunit-related protein; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter; TC 2.A.63.1
YP_004054722.1	COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; InterPro IPR001133; KEGG: zpr:ZPR_4508 monovalent cation/H+ antiporter subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: monovalent cation/H+ antiporter subunit C; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; TC 2.A.63.1
YP_004054723.1	COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750: IPR003916; KEGG: jan:Jann_3692 NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; TC 2.A.63.1
YP_004054724.1	COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: gwc:GWCH70_2870 monovalent cation/H+ antiporter subunit E; PFAM: cation antiporter; SPTR: MrpE; PFAM: Na+/H+ ion antiporter subunit
YP_004054725.1	InterPro IPR007208; KEGG: cpc:Cpar_1407 multiple resistance and pH regulation protein F; PFAM: multiple resistance and pH regulation protein F; SPTR: Monovalent cation/proton antiporter, MrpF/PhaF family protein; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF)
YP_004054726.1	COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: cpb:Cphamn1_0080 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: Monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit
YP_004054727.1	KEGG: chu:CHU_3774 histidine kinase; SPTR: uncharacterized protein
YP_004054728.1	COGs: COG1109 Phosphomannomutase; InterProIPR005844: IPR005845: IPR005846: IPR005843: IPR 005841: IPR016066; KEGG: phe:Phep_1412 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucomutase/phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004054729.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454: IPR000192; KEGG: dfe:Dfer_4416 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_004054730.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: gfo:GFO_2553 universal stress protein family protein; PFAM: UspA domain-containing protein; SPTR: UspA; PFAM: Universal stress protein family
YP_004054731.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782: IPR015211; KEGG: phe:Phep_2445 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; Leukotriene A4 hydrolase; SPTR: Leukotriene A-4 hydrolase (LTA-4 hydrolase) (LeukotrieneA(4) hydrolase); PFAM: Leukotriene A4 hydrolase, C-terminal; Peptidase family M1
YP_004054732.1	InterPro IPR018530; KEGG: lic:LIC12326 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004054733.1	COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: cbb:CLD_1614 decarboxylase family protein; PFAM: Pyridoxal-dependent decarboxylase; SPTR: Pyridoxal phosphate-dependent amino acid decarboxylase; PFAM: Pyridoxal-dependent decarboxylase conserved domain
YP_004054734.1	COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: sli:Slin_5126 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: ATP synthase epsilon chain; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YP_004054735.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; InterProIPR003593: IPR005722: IPR004100: IPR000194: IPR 000793: IPR020003; KEGG: gfo:GFO_3548 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA; SPTR: ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_004054736.1	InterPro IPR001818; KEGG: gfo:GFO_2927 hypothetical protein; PFAM: peptidase M10A and M12B matrixin and adamalysin; SPTR: uncharacterized protein
YP_004054737.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR005467: IPR004358; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004054738.1	KEGG: dfe:Dfer_5195 hypothetical protein; SPTR: uncharacterized protein
YP_004054739.1	KEGG: zpr:ZPR_2139 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3244)
YP_004054740.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005: IPR020449: IPR018062; KEGG: rbi:RB2501_01955 activator protein MtlR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Activator protein MtlR; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004054741.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481: IPR018480; KEGG: cpi:Cpin_0390 glycosyl transferase family 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4
YP_004054742.1	InterPro IPR007016; KEGG: cat:CA2559_02935 hypothetical protein; PFAM: O-antigen polymerase; SPTR: uncharacterized protein; PFAM: O-Antigen ligase
YP_004054743.1	InterPro IPR001173; KEGG: bfs:BF1375 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_004054744.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bth:BT_1344 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_004054745.1	KEGG: nam:NAMH_1656 O-antigen polymerase family; SPTR: O-Antigen Polymerase family
YP_004054746.1	KEGG: smf:Smon_0761 integral membrane protein MviN; SPTR: Integral membrane protein MviN
YP_004054747.1	COGs: COG1541 Coenzyme F390 synthetase; KEGG: cps:CPS_5015 polysaccharide biosynthesis protein; SPTR: polysaccharide biosynthesis protein; PFAM: AMP-binding enzyme
YP_004054748.1	KEGG: hbu:Hbut_1584 transcriptional regulator; SPTR: ParB-like nuclease domain protein; PFAM: ParB-like nuclease domain
YP_004054749.1	COGs: COG0560 Phosphoserine phosphatase; InterPro IPR006385: IPR006383; KEGG: ctc:CTC01739 phosphoserine phosphatase; SPTR: WfdQ; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
YP_004054750.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839: IPR001176; KEGG: cje:Cj1436c aminotransferase; PFAM: aminotransferase class I and II; SPTR: Aminotransferase; PFAM: Aminotransferase class I and II
YP_004054751.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509: IPR008089; KEGG: cpc:Cpar_1802 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004054752.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: dfe:Dfer_3001 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004054753.1	COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: wsu:WS0054 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; SPTR: UDP-GLUCOSE 6-DEHYDROGENASE; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004054754.1	COGs: COG2852 conserved hypothetical protein; KEGG: cyh:Cyan8802_2274 protein of unknown function DUF559; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF559)
YP_004054755.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541; KEGG: chu:CHU_2700 cell division protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: FtsK/SpoIIIE-like protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_004054756.1	COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: chu:CHU_2699 gliding motility-related protein; outer membrane protein; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Gliding motility-related protein; possible outer membrane protein; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_004054757.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR011995: IPR001754; KEGG: chu:CHU_2698 orotidine 5' phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2
YP_004054758.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708: IPR006151; KEGG: chu:CHU_0006 shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase
YP_004054759.1	COGs: COG2035 membrane protein; InterPro IPR007163; KEGG: cts:Ctha_1490 protein of unknown function DUF368; PFAM: protein of unknown function DUF368; SPTR: Predicted membrane protein; manually curated; PFAM: Domain of unknown function (DUF368)
YP_004054760.1	COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: chu:CHU_0004 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase (ComA)
YP_004054761.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: chu:CHU_0003 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: TPR repeat containing protein; PFAM: Tetratricopeptide repeat
YP_004054762.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2955 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dihydroflavonol-4-reductase; PFAM: NAD dependent epimerase/dehydratase family
YP_004054763.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: sli:Slin_6307 capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family
YP_004054764.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: chu:CHU_3844 polysaccharide export periplasmic protein; PFAM: polysaccharide export protein; SPTR: Periplasmic protein involved in polysaccharide export; manually curated; PFAM: Polysaccharide biosynthesis/export protein
YP_004054765.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: abu:Abu_0679 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferases group 1; PFAM: Glycosyl transferases group 1
YP_004054766.1	InterPro IPR009056: IPR003088: IPR008168: IPR020633; KEGG: chu:CHU_3841 cytochrome c variant; PFAM: cytochrome c class I; SPTR: uncharacterized protein; PFAM: Cytochrome c
YP_004054767.1	COGs: COG2262 GTPase; InterPro IPR016496: IPR005225: IPR002917: IPR006073; KEGG: dfe:Dfer_3121 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_004054768.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: cpi:Cpin_0368 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004054769.1	COGs: COG0061 sugar kinase; KEGG: fps:FP1085 hypothetical protein; SPTR: uncharacterized protein; PFAM: ATP-NAD kinase
YP_004054770.1	KEGG: fps:FP1084 hypothetical protein; SPTR: uncharacterized protein; PFAM: SPFH domain / Band 7 family
YP_004054771.1	KEGG: fpl:Ferp_0546 haloacid dehalogenase domain protein hydrolase type 3; SPTR: Haloacid dehalogenase domain protein hydrolase type 3
YP_004054772.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR016471: IPR015977; KEGG: cpi:Cpin_0607 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; PRIAM: Nicotinamide phosphoribosyltransferase; SPTR: Nicotinamide phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family
YP_004054773.1	InterPro IPR000086; KEGG: cpi:Cpin_0606 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004054774.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086: IPR020476: IPR020084; KEGG: cpi:Cpin_0602 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004054775.1	KEGG: lbf:LBF_0345 hypothetical protein; SPTR: uncharacterized protein
YP_004054776.1	COGs: COG3085 conserved hypothetical protein; InterPro IPR007335; KEGG: xbo:XBJ1_4197 transcriptional regulator with PssR; PFAM: protein of unknown function DUF413; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF
YP_004054777.1	KEGG: cpi:Cpin_1073 ATPase AAA; SPTR: ATPase AAA; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004054778.1	COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: chu:CHU_1290 integral membrane protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Integral membrane protein; PFAM: VIT family
YP_004054779.1	COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: cpb:Cphamn1_1469 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2141)
YP_004054780.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_2558 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004054781.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_2818 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004054782.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2819 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004054783.1	KEGG: fba:FIC_01675 hypothetical protein; SPTR: uncharacterized protein
YP_004054784.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: fps:FP0924 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Probable transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_004054785.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808: IPR012318; KEGG: fjo:Fjoh_4632 CRP/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004054786.1	COGs: COG2132 multicopper oxidase; InterProIPR009056: IPR012746: IPR011706: IPR001117: IPR 003088: IPR001287; KEGG: fjo:Fjoh_2418 nitrite reductase, copper-containing; PFAM: cytochrome c class I; multicopper oxidase type 2; multicopper oxidase type 1; PRIAM: Nitrite reductase (NO-forming); SPTR: Probable nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: Multicopper oxidase; Cytochrome c; TIGRFAM: nitrite reductase, copper-containing
YP_004054787.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: fjo:Fjoh_2417 hypothetical protein; PFAM: protein of unknown function DUF323; SPTR: uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme
YP_004054788.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: fjo:Fjoh_2416 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_004054789.1	KEGG: phe:Phep_2499 hypothetical protein; SPTR: uncharacterized protein
YP_004054790.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531: IPR000425; KEGG: cpb:Cphamn1_0655 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004054791.1	COGs: COG2846 Regulator of cell morphogenesis and NO signaling; InterPro IPR019903: IPR012312; KEGG: gfo:GFO_1401 nitric oxide-dependent regulator; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: Nitric oxide-dependent regulator; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: Hemerythrin HHE cation binding domain; Domain of Unknown function (DUF542); TIGRFAM: iron-sulfur cluster repair di-iron protein
YP_004054792.1	KEGG: fjo:Fjoh_2415 hypothetical protein; SPTR: uncharacterized protein
YP_004054793.1	InterPro IPR009056: IPR003088; KEGG: dfe:Dfer_0692 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cytochrome c
YP_004054794.1	COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429: IPR001505; KEGG: rbi:RB2501_05465 nitrous oxide reductase precursor; PFAM: cytochrome c oxidase subunit II; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; PFAM: Cytochrome C oxidase subunit II, periplasmic domain
YP_004054795.1	KEGG: pmx:PERMA_1258 hypothetical protein; SPTR: uncharacterized protein
YP_004054796.1	KEGG: hth:HTH_0161 nitrous oxide reductase accessory protein; SPTR: Nitrous oxide reductase accessory protein; PFAM: NosL
YP_004054797.1	COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006633: IPR006626: IPR007742; KEGG: gfo:GFO_1408 periplasmic copper-binding protein NosD; PFAM: periplasmic copper-binding; SPTR: Periplasmic copper-binding protein NosD; PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies)
YP_004054798.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dfe:Dfer_0696 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004054799.1	KEGG: dfe:Dfer_0697 nitrous-oxide metabolic protein NosY; SPTR: Nitrous-oxide metabolic protein NosY
YP_004054800.1	KEGG: sli:Slin_1828 hypothetical protein; SPTR: uncharacterized protein
YP_004054801.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: zpr:ZPR_2210 two-component system sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004054802.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789: IPR003593: IPR002078: IPR002197: IPR 020441; KEGG: gfo:GFO_0728 two-component response transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Two-component system response regulator containing sigma-54 interaction domain; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004054803.1	KEGG: sde:Sde_3420 thiamine-monophosphate kinase; SPTR: retaining b-glycosidase
YP_004054804.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437: IPR018151; KEGG: gfo:GFO_0725 transcription elongation factor; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: Transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB, C-term
YP_004054805.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: aas:Aasi_0249 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein MreB; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_004054806.1	COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: fjo:Fjoh_4055 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthetase A; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_004054807.1	COGs: COG0029 Aspartate oxidase; InterPro IPR003953: IPR013027; KEGG: fjo:Fjoh_4056 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: L-aspartate oxidase; PFAM: FAD binding domain; TIGRFAM: L-aspartate oxidase
YP_004054808.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: gfo:GFO_1399 Rrf2-like transcriptional regulator protein; PFAM: protein of unknown function UPF0074; SPTR: Rrf2-like transcriptional regulator protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004054809.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: gfo:GFO_1398 cbb3-type cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I
YP_004054810.1	COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR009056: IPR003468: IPR003088; KEGG: gfo:GFO_1397 cbb3-type cytochrome c oxidase subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; SPTR: Cbb3-type cytochrome c oxidase subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II
YP_004054811.1	KEGG: gfo:GFO_1396 secreted protein; SPTR: Secreted protein
YP_004054812.1	KEGG: gfo:GFO_1395 hypothetical protein; SPTR: uncharacterized protein
YP_004054813.1	COGs: COG2346 Truncated hemoglobins; KEGG: gfo:GFO_1394 globin family protein; SPTR: Bacterial-like globin family protein; PFAM: Bacterial-like globin
YP_004054814.1	KEGG: gfo:GFO_1402 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054815.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rbi:RB2501_10797 rrf2 family protein (transcriptional regulator); PFAM: protein of unknown function UPF0074; SPTR: Rrf2 family protein (transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004054816.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: cat:CA2559_02840 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004054817.1	COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR005144: IPR012833; KEGG: fjo:Fjoh_4058 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase
YP_004054818.1	KEGG: sun:SUN_0256 hypothetical protein; SPTR: uncharacterized protein
YP_004054819.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR012840: IPR007197; KEGG: sun:SUN_0257 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein
YP_004054820.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: lpf:lpl2294 hypothetical protein; SPTR: uncharacterized protein
YP_004054821.1	COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR011031: IPR017571: IPR005126; KEGG: pdi:BDI_0108 quinol oxidase; PFAM: NapC/NirT cytochrome c domain protein; SPTR: Cytochrome c nitrate reductase, small subunit; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit
YP_004054822.1	COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit; InterPro IPR003321: IPR011031; KEGG: pdi:BDI_0109 cytochrome c552; PFAM: cytochrome c552; PRIAM: Nitrite reductase (cytochrome; ammonia-forming); SPTR: Nitrite reductase, formate-dependent, cytochrome; PFAM: Cytochrome c552
YP_004054823.1	KEGG: fjo:Fjoh_4630 hypothetical protein; SPTR: uncharacterized protein
YP_004054824.1	COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: tdn:Suden_0916 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: ResB-like family; Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB
YP_004054825.1	KEGG: ppd:Ppro_0588 NADH dehydrogenase (quinone); SPTR: uncharacterized protein
YP_004054826.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: lbf:LBF_2856 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: additional subunit of nitric oxide reductase (Nor) complex, membrane protein; PFAM: Cytochrome c oxidase subunit III
YP_004054827.1	COGs: COG2461 conserved hypothetical protein; InterPro IPR000014; KEGG: coc:Coch_0661 PAS/PAC sensor protein; SPTR: PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; TIGRFAM: PAS domain S-box
YP_004054828.1	COGs: COG4548 Nitric oxide reductase activation protein; InterPro IPR002035; KEGG: lbf:LBF_2852 nitric oxide reductase activation protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: NorD protein; PFAM: von Willebrand factor type A domain
YP_004054829.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: lbf:LBF_2853 MoxR-like ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SPTR: Nitric oxide reductase NorQ protein; PFAM: AAA domain (dynein-related subfamily); CbbQ/NirQ/NorQ C-terminal
YP_004054830.1	COGs: COG3256 Nitric oxide reductase large subunit; InterPro IPR000883; KEGG: lbf:LBF_2854 nitric oxide reductase large subunit; PFAM: cytochrome c oxidase subunit I; PRIAM: Nitric-oxide reductase; SPTR: Nitric-oxide reductase subunit B; PFAM: Cytochrome C and Quinol oxidase polypeptide I
YP_004054831.1	InterPro IPR009056: IPR003088; KEGG: lbf:LBF_2855 nitric oxide reductase-like protein; PFAM: cytochrome c class I; SPTR: Nitric oxide reductase, cytochrome c-containing subunit; PFAM: Cytochrome c
YP_004054832.1	KEGG: fjo:Fjoh_0504 hypothetical protein; SPTR: uncharacterized protein
YP_004054833.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: nde:NIDE3895 peroxiredoxin OsmC; PFAM: OsmC family protein; SPTR: OsmC-like protein; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, SACOL1771 subfamily
YP_004054834.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781; KEGG: bth:BT_2924 acetyl-CoA synthetase; PFAM: CoA-binding domain protein; SPTR: CoA ligase family protein; PFAM: CoA binding domain
YP_004054835.1	KEGG: gfo:GFO_3122 membrane or secreted protein; SPTR: Membrane or secreted protein
YP_004054836.1	InterPro IPR004360; KEGG: phe:Phep_2367 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004054837.1	InterPro IPR006626; KEGG: sli:Slin_3272 parallel beta-helix repeat protein; SPTR: Parallel beta-helix repeat protein; TIGRFAM: parallel beta-helix repeat-containing protein; parallel beta-helix repeat (two copies)
YP_004054838.1	InterPro IPR022269; KEGG: sli:Slin_3273 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: hypothetical protein; TIGRFAM: conserved hypothetical protein, HNE_0200 family
YP_004054839.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: sli:Slin_5544 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: iron-sulfur-binding reductase; PFAM: Cysteine-rich domain
YP_004054840.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017896: IPR017900; KEGG: chu:CHU_0122 oxidoreductase, Fe-S subunit; SPTR: uncharacterized protein
YP_004054841.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003661: IPR003594: IPR004358; KEGG: chu:CHU_3091 sensor histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Response Regulator Receiver Signal Transduction Histidine Kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004054842.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR006145: IPR000748: IPR018496; KEGG: dfe:Dfer_3919 pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004054843.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: chu:CHU_0142 condensin subunit ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: Condensin subunit ScpB; TIGRFAM: segregation and condensation protein B; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_004054844.1	InterPro IPR000962: IPR020458; KEGG: sli:Slin_5647 transcriptional regulator, TraR/DksA family; SPTR: DnaK suppressor protein, putative; PFAM: Prokaryotic dksA/traR C4-type zinc finger
YP_004054845.1	InterPro IPR000620; KEGG: ilo:IL0026 permease; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Predicted permease; PFAM: EamA-like transporter family
YP_004054846.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269: IPR004652: IPR018517; KEGG: coc:Coch_0479 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; SPTR: TIM-barrel protein, nifR3 family; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family
YP_004054847.1	InterPro IPR003675; KEGG: dfe:Dfer_2995 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein family; PFAM: CAAX amino terminal protease family
YP_004054848.1	KEGG: srm:SRM_01921 hypothetical protein; SPTR: uncharacterized protein
YP_004054849.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dfe:Dfer_2993 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_004054850.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096: IPR006095: IPR014362; KEGG: sli:Slin_5648 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: Glutamate dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004054851.1	COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR004428: IPR003817; KEGG: dfe:Dfer_3556 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein
YP_004054852.1	COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: sli:Slin_6088 protein of unknown function DUF785; PFAM: protein of unknown function DUF785; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF785)
YP_004054853.1	COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: dfe:Dfer_3276 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; SPTR: Porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_004054854.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130: IPR020892; KEGG: bvu:BVU_0377 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_004054855.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sli:Slin_4815 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_004054856.1	KEGG: xce:Xcel_1448 ABC transporter related protein; SPTR: ABC transporter related protein
YP_004054857.1	KEGG: tva:TVAG_198570 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein, putative
YP_004054858.1	KEGG: sdl:Sdel_1179 ATPase ATP-binding protein; SPTR: ATPase ATP-binding protein
YP_004054859.1	KEGG: mpe:MYPE2580 hypothetical protein; SPTR: uncharacterized protein MYPE2580
YP_004054860.1	COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: pmt:PMT0954 hypothetical protein; PFAM: VanW family protein; SPTR: VanW family protein; PFAM: VanW like protein
YP_004054861.1	KEGG: lbf:LBF_3062 hypothetical protein; SPTR: uncharacterized protein
YP_004054862.1	COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: rbi:RB2501_13189 D-alanyl-D-alanine dipeptidase; PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; SPTR: Probable peptidase; PFAM: D-ala-D-ala dipeptidase
YP_004054863.1	KEGG: lbf:LBF_3063 hypothetical protein; SPTR: uncharacterized protein
YP_004054864.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: gfo:GFO_2644 two-component response transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two-component system response regulator containing LytTR DNA-binding domain; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004054865.1	COGs: COG5522 integral membrane protein; InterPro IPR011737; KEGG: bmd:BMD_3912 hypothetical protein; PFAM: Conserved hypothetical protein CHP02206, TP0381; SPTR: YwaF; TIGRFAM: conserved hypothetical protein; PFAM: Integral membrane protein (intg_mem_TP0381); TIGRFAM: conserved hypothetical integral membrane protein TIGR02206
YP_004054866.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR005467: IPR011495: IPR003594; KEGG: abu:Abu_1163 two-component sensor histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; ATPase ATP-binding protein; SPTR: Two-component sensor histidine kinase; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004054867.1	InterPro IPR007886: IPR007698; KEGG: chu:CHU_3369 hypothetical protein; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: uncharacterized protein; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain
YP_004054868.1	COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: fps:FP0262 deoxynucleoside kinase; PFAM: deoxynucleoside kinase; SPTR: Deoxynucleoside kinase subfamily, putative; PFAM: Deoxynucleoside kinase
YP_004054869.1	InterPro IPR001425; KEGG: sli:Slin_1643 rhodopsin; PFAM: rhodopsin; SPTR: Rhodopsin; PFAM: Bacteriorhodopsin-like protein
YP_004054870.1	COGs: COG5587 conserved hypothetical protein; InterPro IPR012808: IPR015996; KEGG: fjo:Fjoh_0215 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453
YP_004054871.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR013026: IPR003095; KEGG: chu:CHU_1443 DnaJ class chaperone; heat shock protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: DNAJ class chaperone; heat shock protein; PFAM: DnaJ domain
YP_004054872.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: phe:Phep_4102 peptidase M28; PFAM: peptidase M28; SPTR: Aminopeptidase; PFAM: Peptidase family M28
YP_004054873.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_3692 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase family 4 protein; PFAM: Glycosyl transferases group 1
YP_004054874.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR003953: IPR000103: IPR013027; KEGG: cpi:Cpin_6573 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: HI0933-like protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004054875.1	COGs: COG0172 Seryl-tRNA synthetase; InterProIPR006195: IPR015866: IPR002314: IPR002317: IPR 018156; KEGG: sli:Slin_5630 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase
YP_004054876.1	COGs: COG1158 Transcription termination factor; InterProIPR011129: IPR003593: IPR011112: IPR011113: IPR 000194: IPR004665; KEGG: chu:CHU_3603 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; SMART: Cold shock protein; ATPase AAA; SPTR: Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_004054877.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523: IPR004488; KEGG: tnp:Tnap_0341 magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_004054878.1	COGs: COG0313 methyltransferase; KEGG: meh:M301_1327 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004054879.1	COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: cat:CA2559_05975 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase
YP_004054880.1	KEGG: aco:Amico_0081 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: uncharacterized protein
YP_004054881.1	COGs: COG0004 Ammonia permease; InterPro IPR001905: IPR018047; KEGG: chu:CHU_0916 ammonium transporter; PFAM: ammonium transporter; SPTR: uncharacterized protein; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; TC 1.A.11
YP_004054882.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518: IPR011551; KEGG: chu:CHU_3483 nucleoside triphosphate pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_004054883.1	KEGG: zpr:ZPR_3745 membrane or secreted protein; SPTR: uncharacterized protein
YP_004054884.1	KEGG: fba:FIC_02177 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2807)
YP_004054885.1	COGs: COG4188 dienelactone hydrolase; InterPro IPR016986; KEGG: hau:Haur_2487 lipoprotein signal peptide; SPTR: Dienelactone hydrolase protein; PFAM: isoform II
YP_004054886.1	COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: chu:CHU_3108 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_004054887.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: phe:Phep_1630 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel
YP_004054888.1	KEGG: dfe:Dfer_2979 ATP/GTP-binding; SPTR: Periplasmic ATP/GTP-binding protein
YP_004054889.1	InterPro IPR012910: IPR000531; KEGG: rmr:Rmar_2560 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Outer membrane protein, putative; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor
YP_004054890.1	KEGG: rmr:Rmar_2561 hypothetical protein; SPTR: Outer membrane lipoprotein, putative
YP_004054891.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703: IPR016366: IPR000215; KEGG: sli:Slin_2939 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: ATPase family associated with various cellular activities (AAA), putative; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004054892.1	COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR005764: IPR000836; KEGG: phe:Phep_0836 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase
YP_004054893.1	COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: dfe:Dfer_4745 threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; PFAM: Beta-eliminating lyase
YP_004054894.1	KEGG: tbi:Tbis_0103 40-residue YVTN family beta-propeller repeat-containing protein; SPTR: 40-residue YVTN family beta-propeller repeat protein
YP_004054895.1	COGs: COG0388 amidohydrolase; InterPro IPR003010: IPR000182: IPR001110; KEGG: zpr:ZPR_2804 carbon-nitrogen hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Carbon-nitrogen hydrolase; PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase
YP_004054896.1	COGs: COG0320 Lipoate synthase; InterPro IPR006638: IPR003698: IPR007197; KEGG: sli:Slin_0446 lipoic acid synthetase; PFAM: Radical SAM domain protein; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase
YP_004054897.1	KEGG: sli:Slin_0445 hypothetical protein; SPTR: uncharacterized protein
YP_004054898.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: prw:PsycPRwf_0647 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; PFAM: OsmC-like protein
YP_004054899.1	KEGG: sli:Slin_5833 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2847)
YP_004054900.1	KEGG: tgo:TGME49_051460 hypothetical protein; SPTR: uncharacterized protein
YP_004054901.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017: IPR005475: IPR005476; KEGG: chu:CHU_3183 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion; PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain-containing protein; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SPTR: 2-oxoisovalerate dehydrogenase beta subunit; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004054902.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: chu:CHU_3182 zinc protease; PFAM: peptidase M16 domain protein; SPTR: Zinc protease; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004054903.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526; KEGG: dfe:Dfer_2948 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_004054904.1	COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: chu:CHU_0640 hypothetical protein; PFAM: protein of unknown function DUF752; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF752)
YP_004054905.1	KEGG: cyp:PCC8801_2070 hypothetical protein
YP_004054906.1	KEGG: dfe:Dfer_3682 hypothetical protein; SPTR: uncharacterized protein; PFAM: Conserved Archaeal protein (DUF2204)
YP_004054907.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: chu:CHU_3062 formiminoglutamase-related protein; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Formiminoglutamase-related protein; PFAM: Arginase family
YP_004054908.1	KEGG: zpr:ZPR_3092 hypothetical protein; SPTR: uncharacterized protein
YP_004054909.1	KEGG: cth:Cthe_2161 hypothetical protein; SPTR: uncharacterized protein
YP_004054910.1	COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: amt:Amet_0580 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: Transporter; PFAM: Sodium:neurotransmitter symporter family
YP_004054912.1	InterPro IPR011440; KEGG: ftm:FTM_1408 hypothetical protein; PFAM: protein of unknown function DUF1543; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1543)
YP_004054913.1	COGs: COG2077 Peroxiredoxin; InterPro IPR017936: IPR013740: IPR018219; KEGG: dal:Dalk_2031 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Thiol peroxidase; PFAM: Redoxin
YP_004054914.1	KEGG: cts:Ctha_2265 hypothetical protein; SPTR: uncharacterized protein
YP_004054915.1	KEGG: lbf:LBF_2883 hypothetical protein; SPTR: uncharacterized protein
YP_004054916.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR016160; KEGG: kko:Kkor_0387 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004054917.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347; KEGG: kko:Kkor_0388 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: short-chain dehydrogenase/reductase; PFAM: short chain dehydrogenase
YP_004054918.1	InterPro IPR010329; KEGG: zpr:ZPR_0297 3-hydroxyanthranilate 3,4-dioxygenase; PFAM: 3-hydroxyanthranilic acid dioxygenase; PRIAM: 3-hydroxyanthranilate 3,4-dioxygenase; SPTR: 3-hydroxyanthranilate 3,4-dioxygenase; TIGRFAM: 3-hydroxyanthranilate 3,4-dioxygenase; PFAM: 3-hydroxyanthranilic acid dioxygenase; TIGRFAM: 3-hydroxyanthranilate 3,4-dioxygenase
YP_004054919.1	COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: kko:Kkor_0379 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: Amidohydrolase 2; PFAM: Amidohydrolase
YP_004054920.1	COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048: IPR001497; KEGG: fjo:Fjoh_0876 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: Methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_004054921.1	COGs: COG3844 Kynureninase; InterPro IPR010111; KEGG: fps:FP2215 kynureninase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: kynureninase; PFAM: Aminotransferase class-V; TIGRFAM: kynureninase
YP_004054922.1	COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076: IPR003042; KEGG: gfo:GFO_2711 kynurenine-3-monooxygenase-like protein; PFAM: FAD dependent oxidoreductase; PRIAM: Kynurenine 3-monooxygenase; SPTR: Kynurenine 3-monooxygenase; PFAM: FAD binding domain
YP_004054923.1	COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR017927: IPR008333: IPR001433: IPR000951; KEGG: cpi:Cpin_3456 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; SPTR: Flavodoxin reductase (Ferredoxin-NADPH reductase) family 1; PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_004054924.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347; KEGG: dfe:Dfer_4624 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier protein] reductase protein; PFAM: short chain dehydrogenase
YP_004054925.1	KEGG: phu:Phum_PHUM448870 glucose dehydrogenase precursor, putative; SPTR: uncharacterized protein
YP_004054926.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR012318: IPR001808; KEGG: cpi:Cpin_0678 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: FNR-family transcriptional regulator protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004054927.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383: IPR007197; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_004054928.1	InterPro IPR006260: IPR003538; KEGG: pgi:PG0785 TonB protein, putative; PFAM: TonB domain; SPTR: TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004054929.1	COGs: COG3369 conserved hypothetical protein; InterPro IPR006622: IPR018967; KEGG: sli:Slin_1437 protein of unknown function DUF1271; PFAM: Iron sulphur-containing domain, CDGSH-type; SPTR: uncharacterized protein; PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271)
YP_004054930.1	KEGG: sli:Slin_1568 hypothetical protein; SPTR: uncharacterized protein
YP_004054931.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531: IPR010917; KEGG: gfo:GFO_3184 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004054932.1	COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR000795: IPR004161: IPR004548: IPR005225; KEGG: dfe:Dfer_5122 peptide chain release factor 3; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; SPTR: Peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3
YP_004054933.1	COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR001341; KEGG: zpr:ZPR_0465 aspartokinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase
YP_004054934.1	COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146; KEGG: dfe:Dfer_4096 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Inositol phosphatase/fructose-16-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase
YP_004054935.1	COGs: COG0218 GTPase; InterPro IPR019987: IPR002917; KEGG: phe:Phep_0976 GTP-binding protein HSR1-related; PFAM: GTP-binding protein HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_004054936.1	KEGG: pmx:PERMA_1803 hypothetical protein; SPTR: uncharacterized protein
YP_004054937.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: dfe:Dfer_3261 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_004054938.1	KEGG: sli:Slin_5701 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2795)
YP_004054939.1	KEGG: dfe:Dfer_4120 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF349)
YP_004054940.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593: IPR017871; KEGG: sli:Slin_5234 ABC transporter related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ATP-binding component of ABC transporter; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family
YP_004054941.1	InterPro IPR004360; KEGG: dfe:Dfer_3641 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004054942.1	KEGG: bba:Bd1064 hypothetical protein; SPTR: uncharacterized protein osc
YP_004054943.1	KEGG: rbi:RB2501_06335 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_004054944.1	KEGG: phe:Phep_3878 hypothetical protein; SPTR: uncharacterized protein
YP_004054945.1	InterPro IPR018247; KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004054946.1	KEGG: pjd:Pjdr2_5843 nuclear export factor GLE1; SPTR: Lipoprotein, putative
YP_004054947.1	COGs: COG0527 Aspartokinase; InterProIPR001048: IPR002912: IPR005106: IPR001342: IPR 001341: IPR011147: IPR018042: IPR019811; KEGG: cpi:Cpin_5429 aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; PRIAM: Aspartate kinase., Homoserine dehydrogenase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: aspartate kinase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_004054948.1	COGs: COG0083 Homoserine kinase; InterPro IPR006204: IPR013750: IPR000870: IPR006203; KEGG: gfo:GFO_1969 homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: Homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase
YP_004054949.1	COGs: COG0498 Threonine synthase; InterPro IPR001926: IPR004450; KEGG: fjo:Fjoh_2573 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_004054950.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: mxa:MXAN_0764 M24 family peptidase; PFAM: peptidase M24; SPTR: Xaa-Pro aminopeptidase family enzyme; PFAM: Metallopeptidase family M24
YP_004054951.1	COGs: COG1418 HD superfamily hydrolase; InterProIPR004088: IPR004087: IPR003607: IPR017705: IPR 018111: IPR006674: IPR006675; KEGG: dfe:Dfer_0007 phosphodiesterase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: uncharacterized protein; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_004054952.1	InterPro IPR013838; KEGG: chu:CHU_1128 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cell division protein ZapA
YP_004054953.1	KEGG: chu:CHU_1129 hypothetical protein; SPTR: uncharacterized protein
YP_004054954.1	COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR002547: IPR005121: IPR004532: IPR005146: IPR 005147; KEGG: sli:Slin_0287 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain-containing protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_004054955.1	COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: hmu:Hmuk_0693 protein of unknown function DUF1684; PFAM: protein of unknown function DUF1684; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1684)
YP_004054956.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478: IPR008915: IPR004387; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: peptidase M50; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_004054957.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821: IPR013512: IPR013644; KEGG: sli:Slin_5921 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004054958.1	InterPro IPR004993; KEGG: sli:Slin_5924 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter
YP_004054959.1	KEGG: sli:Slin_2087 DNA/RNA non-specific endonuclease
YP_004054960.1	COGs: COG0481 Membrane GTPase LepA; InterProIPR006297: IPR000795: IPR004161: IPR000640: IPR 013842: IPR005225; KEGG: chu:CHU_1717 GTP-binding protein LepA; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_004054961.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR000672: IPR020630: IPR020631: IPR020867; KEGG: zpr:ZPR_3835 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004054962.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: dfe:Dfer_0088 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004054963.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR013026: IPR006665: IPR011659: IPR006664; KEGG: dfe:Dfer_0087 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004054964.1	InterPro IPR012910: IPR000531; KEGG: gau:GAU_3808 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004054965.1	KEGG: gau:GAU_3807 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family
YP_004054966.1	KEGG: chu:CHU_3779 hypothetical protein; SPTR: uncharacterized protein
YP_004054967.1	InterPro IPR000326; KEGG: gfo:GFO_1033 vanadium-dependent haloperoxidase family protein; PFAM: phosphoesterase PA-phosphatase related; SPTR: Vanadium-dependent haloperoxidase family protein; PFAM: PAP2 superfamily
YP_004054968.1	InterPro IPR013517: IPR011519; KEGG: dfe:Dfer_4948 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV; FG-GAP repeat
YP_004054969.1	InterPro IPR012910; KEGG: fjo:Fjoh_1438 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; SPTR: outer membrane protein probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain
YP_004054970.1	KEGG: sli:Slin_0031 hypothetical protein; SPTR: uncharacterized protein
YP_004054971.1	KEGG: pfh:PFHG_03264 conserved hypothetical protein; SPTR: uncharacterized protein
YP_004054972.1	InterPro IPR012944; KEGG: gfo:GFO_2921 SusD/RagB family protein; PFAM: RagB/SusD domain protein; SPTR: outer membrane protein; PFAM: SusD family
YP_004054973.1	KEGG: bth:BT_0208 hypothetical protein; SPTR: uncharacterized protein; PFAM: Calx-beta domain
YP_004054974.1	KEGG: gfo:GFO_2917 secreted protein; SPTR: Secreted protein
YP_004054975.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: rmr:Rmar_0662 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004054976.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR002917: IPR013029: IPR004396: IPR006073; KEGG: dfe:Dfer_4776 GTP-dependent nucleic acid-binding protein EngD; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: Translation-associated GTPase; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_004054977.1	COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR002743: IPR010156; KEGG: chu:CHU_2218 hypothetical protein; PFAM: protein of unknown function DUF57; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas6; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6
YP_004054978.1	KEGG: chu:CHU_2217 hypothetical protein; SPTR: uncharacterized protein
YP_004054979.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004054980.1	KEGG: dfe:Dfer_3665 hypothetical protein; SPTR: uncharacterized protein
YP_004054981.1	InterPro IPR006660; KEGG: cat:CA2559_10508 hypothetical protein; PFAM: arsenate reductase and related; SPTR: uncharacterized protein; PFAM: ArsC family
YP_004054982.1	KEGG: sru:SRU_2860 hypothetical protein; SPTR: uncharacterized protein
YP_004054983.1	InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_1098 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004054984.1	KEGG: aas:Aasi_0021 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004054985.1	KEGG: fno:Fnod_0715 S-layer domain-containing protein; SPTR: S-layer domain protein
YP_004054986.1	KEGG: dfe:Dfer_0450 hypothetical protein; SPTR: uncharacterized protein
YP_004054987.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402: IPR006439: IPR005833; KEGG: sli:Slin_0811 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase family hydrolase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004054988.1	KEGG: mxa:MXAN_2248 hypothetical protein; SPTR: uncharacterized protein
YP_004054989.1	COGs: COG1292 Choline-glycine betaine transporter; InterPro IPR000060: IPR018093; KEGG: zpr:ZPR_3532 choline/carnitine/betaine transport; PFAM: BCCT transporter; SPTR: choline transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT family transporter; TIGRFAM: choline/carnitine/betaine transport
YP_004054990.1	InterPro IPR006016: IPR006015; KEGG: zpr:ZPR_3533 universal stress protein family protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein family; PFAM: Universal stress protein family
YP_004054991.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: chu:CHU_1444 DNA processing protein; PFAM: SMF family protein; SPTR: Smf protein DNA processing chain A; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_004054992.1	InterPro IPR000551; KEGG: chu:CHU_1445 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator
YP_004054993.1	COGs: COG2843 protein of poly-gamma-glutamate biosynthesis (capsule formation); InterPro IPR019079; KEGG: str:Sterm_2631 protein of poly-gamma-glutamate biosynthesis (capsule formation)-like protein; PFAM: Capsule synthesis protein, CapA; SPTR: uncharacterized protein; PFAM: Bacterial capsule synthesis protein PGA_cap
YP_004054994.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: aas:Aasi_1633 hypothetical protein; PFAM: Peptidase M23; SPTR: M23/M37 peptidase; PFAM: Peptidase family M23
YP_004054995.1	COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018165: IPR018164: IPR012947: IPR003156: IPR 002318; KEGG: chu:CHU_1446 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_004054996.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterPro IPR004413: IPR006075: IPR018027: IPR017958; KEGG: chu:CHU_1447 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: GatB region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_004054997.1	COGs: COG1225 Peroxiredoxin; InterPro IPR017936: IPR000866; KEGG: sli:Slin_5957 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol:disulfide interchange protein; PFAM: AhpC/TSA family
YP_004054998.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467: IPR000014: IPR003594: IPR013655: IPR 004358; KEGG: zpr:ZPR_2477 histidine kinase sensor protein; PFAM: ATPase ATP-binding protein; PAS fold-3 domain protein; SMART: ATPase ATP-binding protein; PAS domain containing protein; SPTR: Histidine kinase sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_004054999.1	InterPro IPR001387; KEGG: zpr:ZPR_2068 membrane protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: uncharacterized protein; PFAM: Helix-turn-helix
YP_004055000.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011659: IPR006680: IPR001252; KEGG: rbi:RB2501_11502 hypothetical protein; PFAM: amidohydrolase; hypothetical protein; SPTR: WD40-like repeat/amidohydrolase domain protein; PFAM: WD40-like Beta Propeller Repeat; Amidohydrolase family
YP_004055001.1	KEGG: zpr:ZPR_1190 hypothetical protein; SPTR: uncharacterized protein
YP_004055002.1	KEGG: gfo:GFO_1372 ATPase central region domain-containing protein; SPTR: uncharacterized protein
YP_004055003.1	InterPro IPR005151; KEGG: kko:Kkor_2190 peptidase S41; PFAM: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41
YP_004055004.1	KEGG: rle:RL3364 hypothetical protein; SPTR: uncharacterized protein
YP_004055005.1	KEGG: cyc:PCC7424_1445 glycosyl transferase family 39; SPTR: uncharacterized protein
YP_004055006.1	KEGG: fjo:Fjoh_3600 hypothetical protein; SPTR: uncharacterized protein
YP_004055007.1	KEGG: bre:BRE_29 hypothetical protein; SPTR: UPF0082 protein BDU_30
YP_004055008.1	KEGG: gfo:GFO_3139 secreted protein; SPTR: Secreted protein
YP_004055009.1	COGs: COG4283 conserved hypothetical protein; InterPro IPR012550; KEGG: str:Sterm_0136 protein of unknown function DUF1706; PFAM: protein of unknown function DUF1706; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1706)
YP_004055010.1	KEGG: bpo:BP951000_2245 DNA-directed RNA polymerase omega subunit family protein-like protein; SPTR: uncharacterized protein
YP_004055011.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR019734: IPR013026: IPR006665: IPR011659: IPR 006664: IPR018521; KEGG: chu:CHU_2715 peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: Peptidoglycan-associated lipoprotein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004055012.1	KEGG: cat:CA2559_07445 hypothetical protein; SPTR: uncharacterized protein
YP_004055013.1	KEGG: mab:MAB_4275c hypothetical protein; SPTR: Na+/H+ antiporter
YP_004055014.1	InterPro IPR008201; KEGG: bth:BT_0167 hypothetical protein; PFAM: protein of unknown function DUF86; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF86
YP_004055015.1	COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: bth:BT_0168 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: toxin-antitoxin system, toxin component; PFAM: Nucleotidyltransferase domain
YP_004055016.1	KEGG: lme:LEUM_1536 von Willebrand factor domain-containing protein; SPTR: Ntnh protein
YP_004055017.1	KEGG: rbi:RB2501_12192 hypothetical protein; SPTR: uncharacterized protein
YP_004055018.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: cat:CA2559_01875 D-alanyl-D-alanine carboxypeptidase; PFAM: beta-lactamase; SPTR: D-alanyl-D-alanine carboxypeptidase; PFAM: Beta-lactamase
YP_004055019.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347; KEGG: amr:AM1_3557 oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase
YP_004055020.1	KEGG: cpi:Cpin_6603 hypothetical protein; SPTR: uncharacterized protein
YP_004055021.1	KEGG: mxa:MXAN_0186 lipoprotein; SPTR: uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF885)
YP_004055022.1	KEGG: gfo:GFO_2894 secreted protein; SPTR: uncharacterized protein
YP_004055023.1	InterPro IPR003018; KEGG: scl:sce4909 GAF domain-containing protein; PFAM: GAF domain protein; SMART: GAF domain protein; SPTR: Response regulator; PFAM: GAF domain
YP_004055024.1	KEGG: pfa:PF11_0021 rifin; SPTR: RIFIN
YP_004055025.1	KEGG: mba:Mbar_A0745 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2807)
YP_004055026.1	COGs: COG2234 aminopeptidase; InterPro IPR003961: IPR007484; KEGG: gfo:GFO_1039 fibronectin type III repeat-containing secreted peptidase, family M28; PFAM: peptidase M28; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; SPTR: Probable aminopeptidase fused to fibronectin type 3 domain; PFAM: Peptidase family M28; Fibronectin type III domain
YP_004055027.1	InterPro IPR019619; KEGG: cat:CA2559_04575 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004055028.1	KEGG: cat:CA2559_04570 leucyl/phenylalanyl-tRNA--protein transferase; SPTR: uncharacterized protein
YP_004055029.1	InterPro IPR017936: IPR000866; KEGG: dfe:Dfer_3524 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Lipoprotein, putative; PFAM: Redoxin
YP_004055030.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR005467: IPR003594: IPR004358; KEGG: ttr:Tter_1031 histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Two-component hybrid sensor and regulator; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004055031.1	KEGG: chu:CHU_0331 hypothetical protein; SPTR: uncharacterized protein
YP_004055032.1	COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: gfo:GFO_0122 methylated-DNA-[protein]-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: 6-O-methylguanine DNA methyltransferase, DNA binding domain subfamily protein; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_004055033.1	KEGG: lbf:LBF_2813 PIN domain-containing protein; SPTR: PIN domain protein; PFAM: PIN domain
YP_004055034.1	KEGG: syp:SYNPCC7002_A1818 CopG family transcriptional regulator; SPTR: Predicted transcriptional regulator, copG family; PFAM: Ribbon-helix-helix protein, copG family
YP_004055035.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Sodium/iodide co-transporter; PFAM: Sodium:solute symporter family
YP_004055036.1	InterPro IPR003769; KEGG: chu:CHU_1046 hypothetical protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: uncharacterized protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS
YP_004055037.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR006154: IPR000093: IPR015967: IPR006171; KEGG: sli:Slin_1600 recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; SPTR: Recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_004055038.1	KEGG: ame:725431 hypothetical protein LOC725431; SPTR: uncharacterized protein
YP_004055039.1	InterPro IPR000834; KEGG: gfo:GFO_2233 hypothetical protein; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain, putative; PFAM: Zinc carboxypeptidase
YP_004055040.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_2021 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: oxidoreductase protein; PFAM: NAD dependent epimerase/dehydratase family
YP_004055041.1	COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR000343: IPR015895: IPR006151: IPR015896; KEGG: chu:CHU_0333 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; PRIAM: Glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_004055043.1	KEGG: pdi:BDI_0816 hypothetical protein; SPTR: uncharacterized protein
YP_004055044.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: fba:FIC_00926 hypothetical protein; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase family M23
YP_004055045.1	COGs: COG3531 protein-disulfide isomerase; KEGG: chu:CHU_3640 protein-disulfide isomerase; SPTR: Protein-disulfide isomerase; PFAM: DSBA-like thioredoxin domain
YP_004055046.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR006195: IPR004365: IPR004364: IPR004115: IPR 004524: IPR002312; KEGG: gfo:GFO_3090 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_004055047.1	KEGG: dfe:Dfer_5195 hypothetical protein; SPTR: uncharacterized protein
YP_004055048.1	InterPro IPR003689; KEGG: chu:CHU_0375 hypothetical protein; PFAM: zinc/iron permease; SPTR: uncharacterized protein; PFAM: ZIP Zinc transporter
YP_004055049.1	InterPro IPR013216; KEGG: fjo:Fjoh_2494 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Tellurite resistance protein TehB
YP_004055050.1	COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: bfr:BF1182 thiamine biosynthesis lipoprotein ApbE precursor; PFAM: ApbE family lipoprotein; SPTR: Thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE family
YP_004055051.1	KEGG: sli:Slin_5074 hypothetical protein; SPTR: uncharacterized protein
YP_004055052.1	KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: uncharacterized protein
YP_004055053.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453: IPR020541; KEGG: dfe:Dfer_4064 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_004055054.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991: IPR000131: IPR018107; KEGG: cat:CA2559_11013 proton/glutamate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: Proton/glutamate symporter; PFAM: Sodium:dicarboxylate symporter family
YP_004055055.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824: IPR001075; KEGG: dfe:Dfer_4882 nitrogen-fixing NifU domain protein; PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; SPTR: NifU domain protein; PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain
YP_004055056.1	COGs: COG3565 dioxygenase of extradiol dioxygenase family; InterPro IPR004360; KEGG: cyt:cce_0483 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Similar to dioxygenase of extradiol dioxygenase family; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004055057.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: sli:Slin_5703 transcriptional regulator; PFAM: AAA-4 family protein; SPTR: transcriptional regulator; PFAM: Divergent AAA domain
YP_004055058.1	KEGG: mva:Mvan_0995 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; SPTR: Glycerol-3-phosphate dehydrogenase
YP_004055059.1	KEGG: chu:CHU_2709 PorT-related protein; SPTR: PorT-related protein
YP_004055060.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: dfe:Dfer_4023 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_004055061.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: chu:CHU_3055 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_004055062.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_4653 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: ABC transporter efflux protein, putative; PFAM: Predicted permease
YP_004055063.1	KEGG: chu:CHU_0110 hypothetical protein; SPTR: uncharacterized protein
YP_004055064.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125: IPR016192; KEGG: chu:CHU_0109 cytosine/adenosine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Cytosine/adenosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004055065.1	COGs: COG0605 Superoxide dismutase; InterPro IPR019831: IPR019832: IPR001189: IPR019833; KEGG: gfo:GFO_3377 superoxide dismutase [Mn]; PFAM: Manganese/iron superoxide dismutase-like; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_004055066.1	InterPro IPR019861; KEGG: gfo:GFO_1837 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004055067.1	InterProIPR002909: IPR003961: IPR003368: IPR013517: IPR 005046: IPR011889: IPR013838; KEGG: dfe:Dfer_1906 lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; FG-GAP repeat protein; Polymorphic membrane protein Chlamydia; cell surface receptor IPT/TIG domain protein; SMART: Fibronectin type III domain protein; cell surface receptor IPT/TIG domain protein; SPTR: Transmembrane protein, putative; TIGRFAM: lipoprotein; PFAM: Mycoplasma protein of unknown function, DUF285; FG-GAP repeat; TIGRFAM: bacterial surface protein 26-residue repeat
YP_004055068.1	InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Hydrolase, NUDIX family protein; PFAM: NUDIX domain
YP_004055069.1	COGs: COG5505 integral membrane protein; InterPro IPR008537; KEGG: pha:PSHAa1062 inner membrane protein; PFAM: protein of unknown function DUF819; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF819)
YP_004055070.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fps:FP1756 hypothetical protein; PFAM: esterase; SPTR: uncharacterized protein; PFAM: esterase
YP_004055071.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: chu:CHU_2639 cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase
YP_004055072.1	COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117: IPR006067: IPR006066; KEGG: zpr:ZPR_3631 ferredoxin-nitrite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; PRIAM: Ferredoxin--nitrite reductase; SPTR: Ferredoxin-nitrite reductase; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain
YP_004055073.1	COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR000878: IPR006366; KEGG: sli:Slin_2052 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase
YP_004055074.1	COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: chu:CHU_2635 precorrin-2 dehydrogenase; SPTR: Precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase; TIGRFAM: siroheme synthase, N-terminal domain
YP_004055075.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500: IPR004511; KEGG: abo:ABO_1686 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; SPTR: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzyme; TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin)
YP_004055076.1	KEGG: tye:THEYE_A1110 phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; SPTR: Thioredoxin family protein
YP_004055077.1	KEGG: tet:TTHERM_00420180 hypothetical protein; SPTR: listeria/Bacterioides repeat-containing domain protein
YP_004055078.1	KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: uncharacterized protein
YP_004055079.1	InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004055080.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004055081.1	InterPro IPR003961; KEGG: cpi:Cpin_6899 conserved repeat domain protein; PFAM: Fibronectin type III domain protein; SPTR: CHU large protein; uncharacterized
YP_004055082.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR019861: IPR006664: IPR006690; KEGG: fsu:Fisuc_0577 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); OmpA family; TIGRFAM: Bacteroidetes-specific membrane protein
YP_004055083.1	KEGG: chu:CHU_3449 hypothetical protein; SPTR: uncharacterized protein
YP_004055084.1	InterPro IPR003961; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004055085.1	KEGG: mmy:MSC_0324 ABC transporter, permease component; SPTR: ABC transporter, permease component (Na+?)
YP_004055086.1	KEGG: cyp:PCC8801_0753 heat domain containing protein; SPTR: HEAT domain containing protein
YP_004055087.1	KEGG: aag:AaeL_AAEL008699 prolylcarboxypeptidase, putative; SPTR: Prolylcarboxypeptidase, putative
YP_004055088.1	COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: pru:PRU_0213 hypothetical protein; SMART: ATPase AAA; SPTR: uncharacterized protein
YP_004055089.1	KEGG: bth:BT_0761 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3352)
YP_004055090.1	KEGG: ath:AT5G63770 ATDGK2 (Diacylglycerol kinase 2); diacylglycerol kinase; SPTR: ATDGK2
YP_004055091.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: phe:Phep_3180 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004055092.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_004055093.1	KEGG: cpi:Cpin_5774 hypothetical protein; SPTR: uncharacterized protein; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004055094.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680: IPR004722; KEGG: chu:CHU_1793 dihydroorotase; PFAM: amidohydrolase; SPTR: Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004055095.1	InterPro IPR011933; KEGG: sli:Slin_1217 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain
YP_004055096.1	InterPro IPR001647; KEGG: lsg:lse_1018 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004055097.1	COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076: IPR003042; KEGG: hau:Haur_2339 monooxygenase FAD-binding; PFAM: FAD dependent oxidoreductase; SPTR: Possible monooxygenase; PFAM: FAD binding domain
YP_004055098.1	KEGG: cpi:Cpin_0865 hypothetical protein; SPTR: uncharacterized protein
YP_004055099.1	COGs: COG0233 Ribosome recycling factor; InterPro IPR015998: IPR002661; KEGG: chu:CHU_0578 ribosome recycling factor (ribosome releasing factor); PFAM: ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_004055100.1	COGs: COG0528 Uridylate kinase; InterPro IPR001048: IPR015963: IPR011817; KEGG: phe:Phep_0115 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_004055101.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089: IPR001882; KEGG: sli:Slin_2390 biotin/lipoyl attachment domain-containing protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Pyruvate carboxylase; PFAM: Biotin-requiring enzyme
YP_004055102.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: sli:Slin_4484 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004055103.1	InterPro IPR001901: IPR005807; KEGG: aas:Aasi_1402 hypothetical protein; PFAM: protein secE/sec61-gamma protein; SPTR: uncharacterized protein; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_004055104.1	COGs: COG0250 Transcription antiterminator; InterPro IPR006645: IPR005824: IPR001062: IPR015869; KEGG: chu:CHU_3174 transcription antitermination protein NusG; PFAM: NGN domain-containing protein; KOW domain protein; SMART: NGN domain-containing protein; KOW domain protein; SPTR: Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_004055105.1	COGs: COG0080 Ribosomal protein L11; InterProIPR000911: IPR020784: IPR020783: IPR006519: IPR 020785; KEGG: sli:Slin_4481 ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_004055106.1	COGs: COG0081 Ribosomal protein L1; InterPro IPR002143: IPR005878; KEGG: chu:CHU_3172 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_004055107.1	COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: dfe:Dfer_3451 ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: 50S ribosomal protein L10; PFAM: Ribosomal protein L10
YP_004055108.1	COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR000206: IPR013823; KEGG: sli:Slin_4478 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_004055109.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641: IPR007121; KEGG: chu:CHU_3169 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_004055110.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR006592: IPR012754: IPR007080: IPR000722: IPR 007066: IPR007083: IPR007081; KEGG: chu:CHU_3168 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_004055111.1	KEGG: chu:CHU_3167 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3467)
YP_004055112.1	COGs: COG0048 Ribosomal protein S12; InterPro IPR006032: IPR005679; KEGG: zpr:ZPR_3879 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_004055113.1	COGs: COG0049 Ribosomal protein S7; InterPro IPR000235: IPR005717: IPR020606; KEGG: dfe:Dfer_4340 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_004055114.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 004540: IPR005225: IPR004838; KEGG: chu:CHU_3164 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004055115.1	COGs: COG0051 Ribosomal protein S10; InterPro IPR005731: IPR001848: IPR018268; KEGG: chu:CHU_3163 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_004055116.1	COGs: COG0087 Ribosomal protein L3; InterPro IPR000597: IPR019927: IPR019926; KEGG: dfe:Dfer_4343 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_004055117.1	COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: aas:Aasi_0196 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family
YP_004055118.1	COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: aas:Aasi_0195 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: uncharacterized protein; PFAM: Ribosomal protein L23
YP_004055119.1	COGs: COG0090 Ribosomal protein L2; InterPro IPR002171: IPR005880; KEGG: chu:CHU_3159 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_004055120.1	COGs: COG0185 Ribosomal protein S19; InterPro IPR002222: IPR005732: IPR020934; KEGG: sli:Slin_5783 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_004055121.1	COGs: COG0091 Ribosomal protein L22; InterPro IPR001063: IPR005727; KEGG: sli:Slin_5782 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_004055122.1	COGs: COG0092 Ribosomal protein S3; InterProIPR004088: IPR004044: IPR004087: IPR008282: IPR 001351: IPR005704: IPR018280; KEGG: chu:CHU_3156 30S ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_004055123.1	COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR000114: IPR016180: IPR020798; KEGG: chu:CHU_3155 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_004055124.1	InterPro IPR001854: IPR018254; KEGG: chu:CHU_3154 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_004055125.1	COGs: COG0186 Ribosomal protein S17; InterPro IPR000266: IPR019984; KEGG: phe:Phep_0611 ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_004055126.1	COGs: COG0093 Ribosomal protein L14; InterPro IPR000218: IPR005745: IPR019972; KEGG: dfe:Dfer_4353 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_004055127.1	COGs: COG0198 Ribosomal protein L24; InterPro IPR005824: IPR003256: IPR005825; KEGG: aas:Aasi_0186 50S ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_004055128.1	COGs: COG0094 Ribosomal protein L5; InterPro IPR002132: IPR020929; KEGG: chu:CHU_3150 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_004055129.1	COGs: COG0199 Ribosomal protein S14; InterPro IPR001209: IPR018271; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: Ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e
YP_004055130.1	COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: Ribosomal protein S8; PFAM: Ribosomal protein S8
YP_004055131.1	COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040: IPR000702: IPR019906; KEGG: chu:CHU_3147 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_004055132.1	COGs: COG0256 Ribosomal protein L18; InterPro IPR005484: IPR004389; KEGG: dfe:Dfer_4359 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_004055133.1	COGs: COG0098 Ribosomal protein S5; InterPro IPR013810: IPR005324: IPR005712: IPR018192; KEGG: chu:CHU_3145 30S ribosomal protein S5; PFAM: Ribosomal protein S5; ribosomal protein S5 domain protein; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_004055134.1	COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517: IPR005996; KEGG: btb:BMB171_C0123 50S ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_004055135.1	COGs: COG0200 Ribosomal protein L15; InterPro IPR005749: IPR001196; KEGG: dfe:Dfer_4362 ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_004055136.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dfe:Dfer_4363 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Protein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_004055137.1	COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196: IPR004368; KEGG: chu:CHU_3140 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_004055138.1	InterPro IPR000473; KEGG: cat:CA2559_05830 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_004055139.1	COGs: COG0099 Ribosomal protein S13; InterPro IPR001892: IPR019980: IPR018269; KEGG: dfe:Dfer_4367 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_004055140.1	COGs: COG0100 Ribosomal protein S11; InterPro IPR001971: IPR019981: IPR018102; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_004055141.1	COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912: IPR002942: IPR005709: IPR018079; KEGG: chu:CHU_3137 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_004055142.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011261: IPR011262: IPR011260: IPR011773: IPR 011263; KEGG: chu:CHU_3136 DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_004055143.1	COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: sli:Slin_5759 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_004055144.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR002474: IPR000991: IPR001317: IPR011702: IPR 006220: IPR006274: IPR017926; KEGG: dfe:Dfer_4372 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_004055145.1	COGs: COG0148 Enolase; InterPro IPR020811: IPR020810: IPR000941: IPR020809; KEGG: dfe:Dfer_4373 enolase; PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_004055146.1	KEGG: chu:CHU_3132 hypothetical protein; SPTR: uncharacterized protein; PFAM: Septum formation initiator
YP_004055147.1	KEGG: cpi:Cpin_6912 hypothetical protein; SPTR: uncharacterized protein
YP_004055148.1	COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: cpi:Cpin_6875 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_004055149.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: dfe:Dfer_3926 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family
YP_004055150.1	KEGG: clj:CLJU_c05090 hypothetical protein; SPTR: uncharacterized protein
YP_004055151.1	COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: gfo:GFO_2880 alkaline phosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: alkaline phosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_004055152.1	KEGG: ptm:GSPATT00001621001 hypothetical protein; SPTR: uncharacterized protein
YP_004055153.1	KEGG: ngr:NAEGRDRAFT_61558 hypothetical protein; SPTR: Predicted protein
YP_004055154.1	KEGG: enc:ECL_02191 dmso reductase anchor subunit; SPTR: Dmso reductase anchor subunit
YP_004055155.1	KEGG: dfe:Dfer_1543 hypothetical protein; SPTR: uncharacterized protein
YP_004055156.1	COGs: COG4815 conserved hypothetical protein; InterPro IPR011235; KEGG: fjo:Fjoh_0073 hypothetical protein; PFAM: protein of unknown function UCP032285; SPTR: uncharacterized protein; PFAM: MepB protein
YP_004055157.1	COGs: COG2249 NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: fjo:Fjoh_4532 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold
YP_004055158.1	InterPro IPR004360; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004055159.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_5821 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_004055160.1	KEGG: gur:Gura_4343 hypothetical protein; SPTR: Two-component sensor histidine kinase
YP_004055161.1	KEGG: dfe:Dfer_3340 hypothetical protein; SPTR: uncharacterized protein
YP_004055162.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: gfo:GFO_3044 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: Nitrilotriacetate monooxygenase component B; PFAM: Flavin reductase like domain
YP_004055163.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583: IPR001962: IPR006426: IPR017932; KEGG: ddr:Deide_20310 asparagine synthase (glutamine-hydrolyzing, glutamine-dependent asparagine synthetase); PFAM: asparagine synthase; glutamine amidotransferase class-II; SPTR: asparagine synthase (Glutamine-hydrolyzing, glutamine-dependent asparagine synthetase); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_004055164.1	COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: IS1663 transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase
YP_004055165.1	COGs: COG4111 conserved hypothetical protein; InterPro IPR000086; KEGG: amu:Amuc_0278 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: uncharacterized protein; PFAM: NUDIX domain
YP_004055166.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR000023: IPR012003: IPR012828: IPR015912; KEGG: sli:Slin_4275 6-phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_004055167.1	KEGG: phe:Phep_3738 N-acetylglucosamine kinase; SPTR: N-acetylglucosamine kinase
YP_004055168.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bfs:BF0512 ROK family transcriptional repressor; PFAM: ROK family protein; SPTR: uncharacterized protein; PFAM: ROK family; TIGRFAM: ROK family protein (glucokinase)
YP_004055169.1	KEGG: api:100160993 similar to viral A-type inclusion protein, putative; SPTR: uncharacterized protein
YP_004055170.1	COGs: COG3751 proline hydroxylase; InterPro IPR005123: IPR006620; KEGG: sli:Slin_4910 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; SPTR: 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_004055171.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR001917; KEGG: csc:Csac_1225 glycine C-acetyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_004055172.1	InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: uncharacterized protein
YP_004055173.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478: IPR001940; KEGG: chu:CHU_3006 periplasmic serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Periplasmic serine protease; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004055174.1	KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: uncharacterized protein; PFAM: S1/P1 Nuclease
YP_004055175.1	InterPro IPR002583; KEGG: dfe:Dfer_0225 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_004055176.1	COGs: COG2003 DNA repair protein; InterPro IPR001405: IPR020891; KEGG: sli:Slin_0523 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_004055177.1	KEGG: chu:CHU_2520 hypothetical protein; SPTR: uncharacterized protein
YP_004055178.1	InterProIPR013767: IPR013655: IPR000014: IPR000700: IPR 001610; KEGG: meh:M301_2093 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS domain containing protein; SPTR: PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like; TIGRFAM: PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004055179.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: phe:Phep_1262 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_004055180.1	KEGG: ngr:NAEGRDRAFT_80621 hypothetical protein; SPTR: Predicted protein
YP_004055181.1	KEGG: dfe:Dfer_1163 hypothetical protein; SPTR: uncharacterized protein
YP_004055182.1	KEGG: bth:BT_1569 hypothetical protein; SPTR: uncharacterized protein
YP_004055183.1	KEGG: pdi:BDI_1980 hypothetical protein; SPTR: MarR/emrR family transcriptional regulator
YP_004055184.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: srm:SRM_00929 conserved hypohtetical protein, membrane, containing tetratricopeptide repeat domain; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: Conserved hypohtetical protein, membrane, containing tetratricopeptide repeat domain; PFAM: Tetratricopeptide repeat
YP_004055185.1	InterPro IPR012910; KEGG: sli:Slin_3591 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain
YP_004055186.1	KEGG: sli:Slin_2831 hypothetical protein; SPTR: uncharacterized protein
YP_004055187.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001440: IPR003661: IPR003594: IPR004358: IPR 019734: IPR005467: IPR013026; KEGG: rbi:RB2501_13794 two component system histidine kinase/response regulator fusion protein; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; hypothetical protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: Sensor histidine kinase/response regulator; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: pentatricopeptide repeat domain (PPR motif)
YP_004055188.1	InterPro IPR005318; KEGG: saf:SULAZ_1441 outer membrane porin, OprD family; PFAM: outer membrane porin; SPTR: uncharacterized protein; PFAM: outer membrane porin, OprD family
YP_004055189.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004055190.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808: IPR012318; KEGG: gfo:GFO_0959 CRP family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; SPTR: Crp family transcriptional regulator protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004055191.1	InterPro IPR001845; KEGG: sli:Slin_5228 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004055192.1	COGs: COG2217 Cation transport ATPase; InterProIPR006121: IPR008250: IPR005834: IPR001757: IPR 001756: IPR006403: IPR006416: IPR018303: IPR017969: IPR000150; KEGG: zpr:ZPR_3370 copper transport-related membrane protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: copper transport-related membrane protein; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004055193.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: chu:CHU_2733 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: flavoprotein; PFAM: NADPH-dependent FMN reductase
YP_004055194.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: zpr:ZPR_0836 hypothetical protein; PFAM: YceI family protein; SPTR: uncharacterized protein; PFAM: YceI-like domain
YP_004055195.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845: IPR011268: IPR011270; KEGG: phe:Phep_0646 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family
YP_004055196.1	InterPro IPR010870: IPR010917; KEGG: fjo:Fjoh_0542 phosphate-selective porin O and P; PFAM: phosphate-selective porin O and P; SPTR: uncharacterized protein; PFAM: Phosphate-selective porin O and P
YP_004055197.1	COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: ilo:IL0105 phosphatase; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: Predicted phosphatase; PFAM: Macro domain
YP_004055198.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR015977: IPR007229: IPR006405; KEGG: gfo:GFO_3189 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase
YP_004055199.1	COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: lpa:lpa_00470 bifunctional pyrazinamidase/nicotinamidase; PFAM: isochorismatase hydrolase; PRIAM: Nicotinamidase; SPTR: Bifunctional pyrazinamidase/nicotinamidase; PFAM: Isochorismatase family
YP_004055200.1	KEGG: cho:Chro.60411 hypothetical protein; SPTR: uncharacterized protein Sb02g035350
YP_004055201.1	KEGG: bau:BUAPTUC7_342 ribonuclease E; SPTR: Ribonuclease E
YP_004055202.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2351 outer membrane protein-like protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane protein TolC, putative; PFAM: Outer membrane efflux protein
YP_004055203.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: cpi:Cpin_7079 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: ABC-type transport systems, involved in lipoprotein release, permease components; PFAM: Predicted permease
YP_004055204.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cpi:Cpin_7080 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit, putative; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004055205.1	InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Methyltransferase domain
YP_004055206.1	InterPro IPR012910: IPR000531; KEGG: phe:Phep_3310 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane exported protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004055207.1	InterPro IPR000782; KEGG: rbi:RB2501_12547 adhesion lipoprotein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: adhesion lipoprotein; PFAM: Fasciclin domain
YP_004055208.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sus:Acid_7369 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase family
YP_004055209.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR005931: IPR016160; KEGG: dfe:Dfer_3807 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1
YP_004055210.1	KEGG: fjo:Fjoh_1716 AsmA family protein; SPTR: AsmA family protein
YP_004055211.1	COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357; KEGG: chu:CHU_1054 hypothetical protein; PFAM: deoxyribodipyrimidine photolyase-related protein; SPTR: uncharacterized protein; PFAM: Deoxyribodipyrimidine photo-lyase-related protein
YP_004055212.1	KEGG: brm:Bmur_0020 TPR repeat-containing protein; SPTR: uncharacterized protein
YP_004055213.1	COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: gfo:GFO_0789 phosphodiesterase/alkaline phosphatase D-like protein; SPTR: Alkaline phosphatase D domain protein; PFAM: PhoD-like phosphatase
YP_004055214.1	KEGG: coc:Coch_0219 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF481
YP_004055215.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: dfe:Dfer_3272 DNA polymerase III gamma/tau subunit; SPTR: DNA polymerase III, delta subunit
YP_004055216.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033: IPR019822; KEGG: zpr:ZPR_1133 sec-independent protein translocase protein TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_004055217.1	COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085: IPR019798; KEGG: dfe:Dfer_3814 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004055218.1	InterPro IPR010902; KEGG: dfe:Dfer_5063 NUMOD4 domain-containing protein; PFAM: NUMOD4 domain protein; SPTR: NUMOD4 domain-containing protein; PFAM: NUMOD4 motif
YP_004055219.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959: IPR003593; KEGG: cpi:Cpin_0165 ATPase AAA; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: AAA family ATPase protein; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)
YP_004055220.1	COGs: COG0697 Permease of the drug/metabolite transporter (DMT) superfamily; InterPro IPR000620; KEGG: cat:CA2559_02540 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: transmembrane permease; PFAM: EamA-like transporter family
YP_004055221.1	KEGG: gfo:GFO_0525 hypothetical protein; SPTR: uncharacterized protein
YP_004055222.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: sli:Slin_5831 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_004055223.1	COGs: COG1162 GTPase; InterPro IPR004881: IPR010914; KEGG: dfe:Dfer_3198 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: Ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_004055225.1	InterPro IPR012867; KEGG: sti:Sthe_0222 protein of unknown function DUF1648; PFAM: protein of unknown function DUF1648; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1648)
YP_004055226.1	COGs: COG4301 conserved hypothetical protein; InterPro IPR019257; KEGG: sli:Slin_6101 methyltransferase; PFAM: Protein of unknown function DUF2260; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase
YP_004055227.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532: IPR017806; KEGG: fjo:Fjoh_3833 hypothetical protein; PFAM: protein of unknown function DUF323; SPTR: uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: conserved hypothetical protein TIGR03440
YP_004055228.1	InterPro IPR019861; KEGG: sli:Slin_3585 hypothetical protein; SPTR: membrane protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004055229.1	InterPro IPR013517: IPR018294; KEGG: fps:FP0688 hypothetical protein; PFAM: FG-GAP repeat protein; SPTR: FG-GAP repeat domain protein
YP_004055230.1	KEGG: cpi:Cpin_7137 hypothetical protein; SPTR: uncharacterized protein
YP_004055231.1	InterPro IPR007730: IPR019861; KEGG: gfo:GFO_0053 hypothetical protein; PFAM: Sporulation domain-containing protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); Sporulation related domain; TIGRFAM: Bacteroidetes-specific membrane protein
YP_004055232.1	InterPro IPR013517: IPR000601; KEGG: phe:Phep_2593 conserved repeat domain protein; PFAM: PKD domain containing protein; FG-GAP repeat protein; SMART: PKD domain containing protein; SPTR: Conserved repeat domain protein; PFAM: PKD domain
YP_004055233.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176: IPR003959: IPR013093: IPR019489: IPR 001270: IPR017730: IPR018368: IPR003593; KEGG: sli:Slin_0495 ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: Endopeptidase Clp ATP-binding chain B; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_004055234.1	InterPro IPR011123: IPR005829; KEGG: fjo:Fjoh_1559 two component regulator; PFAM: Two component regulator three Y domain-containing protein; SPTR: Two component regulator three Y motif family; PFAM: Y_Y_Y domain
YP_004055235.1	COGs: COG0824 thioesterase; KEGG: azo:azo3771 thioesterase; SPTR: uncharacterized protein; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004055236.1	InterPro IPR000601: IPR007110; KEGG: dfe:Dfer_3689 PKD domain containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: uncharacterized protein; PFAM: PKD domain
YP_004055237.1	InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_004055238.1	COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: chu:CHU_1393 Zn-dependent protease with chaperone function; PFAM: peptidase M48 Ste24p; PRIAM: Ste24 endopeptidase; SPTR: Caax prenyl protease 1; PFAM: Peptidase family M48
YP_004055239.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659: IPR006665: IPR013026; KEGG: chu:CHU_1558 outer membrane protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: Outer membrane protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004055240.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022: IPR000438: IPR011762: IPR011763; KEGG: sli:Slin_1632 carboxyl transferase; PFAM: carboxyl transferase; SPTR: propionyl-CoA carboxylase beta chain protein; PFAM: Carboxyl transferase domain
YP_004055241.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: zpr:ZPR_1793 probable transmembrane protein; PFAM: fatty acid hydroxylase; SPTR: Probable transmembrane protein; PFAM: Fatty acid hydroxylase superfamily
YP_004055242.1	KEGG: bfs:BF3479 hypothetical protein; SPTR: uncharacterized protein
YP_004055243.1	COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: bfs:BF3478 hypothetical protein; PFAM: protein of unknown function DUF955; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF955)
YP_004055244.1	InterPro IPR001387; KEGG: bfr:BF3686 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: transcriptional regulator; PFAM: Helix-turn-helix
YP_004055245.1	KEGG: ate:Athe_2114 KWG repeat protein; SPTR: uncharacterized protein
YP_004055246.1	KEGG: bpo:BP951000_0657 dynein heavy chain; SPTR: uncharacterized protein
YP_004055247.1	InterPro IPR013247; KEGG: cph:Cpha266_0059 SH3 type 3 domain-containing protein; PFAM: SH3 type 3 domain protein; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: Bacterial SH3 domain
YP_004055248.1	KEGG: tet:TTHERM_00474650 cyclic nucleotide-binding domain containing protein; SPTR: uncharacterized protein
YP_004055249.1	KEGG: pbe:PB000112.03.0 hypothetical protein; SPTR: uncharacterized protein
YP_004055251.1	KEGG: sun:SUN_1965 hypothetical protein; SPTR: uncharacterized protein
YP_004055252.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395: IPR006311: IPR017909; KEGG: ade:Adeh_3215 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_004055253.1	COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: pdi:BDI_3123 transmembrane protein; PFAM: protein of unknown function DUF418; SPTR: transport protein; PFAM: Protein of unknown function (DUF1624); Protein of unknown function (DUF418)
YP_004055254.1	InterPro IPR008254; KEGG: rbi:RB2501_01036 flavodoxin, putative; SPTR: Flavodoxin
YP_004055255.1	COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: tmt:Tmath_1401 hypothetical protein; PFAM: cupin; SPTR: uncharacterized protein; PFAM: Cupin domain
YP_004055256.1	KEGG: gur:Gura_4371 hypothetical protein; SPTR: uncharacterized protein
YP_004055258.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR020449: IPR018060; KEGG: cpi:Cpin_3787 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004055259.1	KEGG: fps:FP1550 hypothetical protein; SPTR: uncharacterized protein
YP_004055260.1	KEGG: cat:CA2559_11618 hypothetical protein; SPTR: uncharacterized protein
YP_004055261.1	KEGG: fps:FP1547 hypothetical protein; SPTR: uncharacterized protein
YP_004055262.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR: uncharacterized protein
YP_004055263.1	KEGG: phe:Phep_2967 hypothetical protein; SPTR: uncharacterized protein
YP_004055264.1	KEGG: zpr:ZPR_0720 membrane protein; SPTR: uncharacterized protein
YP_004055265.1	InterPro IPR011727; KEGG: cpi:Cpin_6784 hypothetical protein; PFAM: Conserved hypothetical protein CHP02117; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2459); TIGRFAM: conserved hypothetical protein
YP_004055266.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: nfa:nfa1540 two-component system response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: two-component system response regulator; PFAM: Response regulator receiver domain
YP_004055267.1	KEGG: cat:CA2559_01615 hypothetical protein; SPTR: uncharacterized protein
YP_004055268.1	InterPro IPR013517: IPR018294; KEGG: mxa:MXAN_1046 FG-GAP repeat-HVR domain-containing protein; PFAM: FG-GAP repeat protein; SPTR: FG-GAP repeat domain protein
YP_004055270.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: sli:Slin_1227 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: outer membrane protein probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004055271.1	KEGG: sli:Slin_2828 hypothetical protein; SPTR: uncharacterized protein
YP_004055272.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: phe:Phep_3809 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: HIT family protein; PFAM: HIT domain
YP_004055273.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437: IPR006359; KEGG: dfe:Dfer_4815 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_004055274.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: srm:SRM_01933 conserved hypothetical protein, membrane containing pentapeptide repeat; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat family protein; PFAM: Pentapeptide repeats (8 copies)
YP_004055275.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: dfe:Dfer_0419 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: Predicted dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004055276.1	COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668: IPR000644: IPR006667: IPR006669; KEGG: chu:CHU_1629 magnesium transporter, MgtE; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein; SPTR: Magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE)
YP_004055277.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737: IPR011530: IPR020598; KEGG: chu:CHU_1628 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_004055278.1	COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: sli:Slin_0323 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_004055279.1	COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_004055280.1	InterPro IPR002677; KEGG: fps:FP2380 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_004055281.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747: IPR004655; KEGG: phe:Phep_3817 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004055282.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR013185: IPR001059: IPR015365: IPR020599: IPR 011768: IPR013852; KEGG: aas:Aasi_0714 hypothetical protein; PFAM: Elongation factor P; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_004055283.1	COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR000089: IPR001249: IPR001882; KEGG: dfe:Dfer_4149 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_004055284.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR005481: IPR005479: IPR005482: IPR004549: IPR 011761: IPR011764; KEGG: sli:Slin_5245 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004055285.1	KEGG: chu:CHU_1620 hypothetical protein; SPTR: uncharacterized protein
YP_004055286.1	COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: gym:GYMC10_0704 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP family protein; PFAM: Endoribonuclease L-PSP
YP_004055287.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: chu:CHU_1432 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family
YP_004055288.1	KEGG: chu:CHU_0918 hypothetical protein; SPTR: uncharacterized protein
YP_004055289.1	COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991: IPR016226: IPR010139: IPR017926; KEGG: chu:CHU_1271 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I; SPTR: Imidazole glycerol phosphate synthase subunit hisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_004055290.1	COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062: IPR006063; KEGG: sli:Slin_5534 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino) methylideneamino)imidazole-4-carboxamideisomerase; PFAM: histidine biosynthesis protein; SPTR:1-(5-phosphoribosyl)-5-((5-phosphoribosylamino )methylideneamino)imidazole-4-carboxamideisomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_004055291.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062: IPR004651; KEGG: sli:Slin_5537 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_004055292.1	COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496: IPR021130: IPR008179; KEGG: cpi:Cpin_1832 phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_004055293.1	KEGG: phe:Phep_3388 hypothetical protein; SPTR: uncharacterized protein
YP_004055294.1	KEGG: phe:Phep_3388 hypothetical protein; SPTR: uncharacterized protein
YP_004055295.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gfo:GFO_0968 nitroreductase family protein; PFAM: nitroreductase; SPTR: Nitroreductase family protein; PFAM: Nitroreductase family
YP_004055296.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR003329: IPR004528; KEGG: dfe:Dfer_5048 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_004055297.1	COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002142: IPR002810; KEGG: chu:CHU_2844 serine protease, ClpP class; PFAM: protein of unknown function DUF107; peptidase S49; SPTR: uncharacterized protein; PFAM: Peptidase family S49; NfeD-like
YP_004055298.1	InterPro IPR018392: IPR002482; KEGG: chu:CHU_2842 LysM repeat-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Possible LysM domain; PFAM: LysM domain
YP_004055299.1	InterPro IPR014127; KEGG: dfe:Dfer_5052 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757
YP_004055300.1	COGs: COG1570 Exonuclease VII large subunit; InterPro IPR020579; KEGG: bvu:BVU_0271 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; SPTR: uncharacterized protein; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_004055302.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: gfo:GFO_2553 universal stress protein family protein; PFAM: UspA domain-containing protein; SPTR: UspA; PFAM: Universal stress protein family
YP_004055303.1	InterPro IPR003807; KEGG: zpr:ZPR_3646 hypothetical protein; PFAM: protein of unknown function DUF202; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF
YP_004055304.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR001440: IPR019734: IPR013026; KEGG: chu:CHU_3775 TPR repeat-containing protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide repeat family
YP_004055305.1	KEGG: nth:Nther_1263 redoxin domain protein; SPTR: Redoxin domain protein
YP_004055306.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: cpi:Cpin_6189 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004055307.1	KEGG: rbi:RB2501_09295 hypothetical protein; SPTR: uncharacterized protein
YP_004055308.1	KEGG: sli:Slin_0262 Xaa-Pro aminopeptidase family enzyme; SPTR: Xaa-Pro aminopeptidase family enzyme; PFAM: Metallopeptidase family M24
YP_004055309.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545: IPR001650: IPR005580: IPR014021: IPR 014001; KEGG: gfo:GFO_2658 ATP-independent RNA helicase DbpA; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-independent RNA helicase; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_004055310.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545: IPR001650: IPR014021: IPR014014: IPR 000629: IPR014001; KEGG: chu:CHU_1885 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Possible ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004055311.1	KEGG: fps:FP0665 hypothetical protein; SPTR: uncharacterized protein
YP_004055312.1	KEGG: chu:CHU_0793 sensor histidine kinase; SPTR: uncharacterized protein
YP_004055313.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198: IPR002347: IPR020904; KEGG: cat:CA2559_04715 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase
YP_004055314.1	KEGG: ton:TON_0225 hypothetical protein; SPTR: uncharacterized protein; PFAM: PemK-like protein
YP_004055315.1	KEGG: aac:Aaci_0465 transcriptional regulator, XRE family; SPTR: Transcriptional regulator, XRE family
YP_004055316.1	KEGG: bfs:BF0554 hypothetical protein; SPTR: uncharacterized protein
YP_004055317.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176: IPR020563; KEGG: chu:CHU_2183 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_004055318.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR020046: IPR020047: IPR002562: IPR001098: IPR 002298: IPR018320: IPR019760: IPR002421: IPR008918; KEGG: dfe:Dfer_1096 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I
YP_004055319.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073: IPR005945: IPR002410; KEGG: gfo:GFO_0853 proline iminopeptidase; PFAM: alpha/beta hydrolase fold; SPTR: Proline iminopeptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily
YP_004055320.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: fjo:Fjoh_1627 UspA domain-containing protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein family; PFAM: Universal stress protein family
YP_004055321.1	COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537: IPR004657; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
YP_004055322.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: sli:Slin_0040 peroxiredoxin; PFAM: glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase
YP_004055323.1	COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148: IPR015945: IPR008909: IPR001278: IPR 001412; KEGG: coc:Coch_0186 arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain protein; Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_004055324.1	COGs: COG4874 Uncharacterized protein containing a pentein-type domain; InterPro IPR014541; KEGG: fjo:Fjoh_0365 pentein-type domain-containing protein; SPTR: Uncharacterized protein containing a pentein-type domain-like protein
YP_004055325.1	COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: coc:Coch_1455 amidinotransferase; PFAM: amidinotransferase; SPTR: DdaH family protein; PFAM: Amidinotransferase
YP_004055326.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: dfe:Dfer_3427 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_004055327.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018: IPR003661: IPR003594: IPR004358: IPR 005467: IPR000209; KEGG: aci:ACIAD3176 sensory transduction histidine kinase; PFAM: ATPase ATP-binding protein; GAF domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; GAF domain protein; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain
YP_004055328.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043: IPR004410; KEGG: fps:FP0408 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_004055329.1	COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: gwc:GWCH70_1956 thiol-disulphide oxidoreductase DCC; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF393
YP_004055330.1	KEGG: sli:Slin_0230 hypothetical protein; SPTR: uncharacterized protein
YP_004055331.1	InterPro IPR011138; KEGG: sli:Slin_5011 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
YP_004055332.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953: IPR004112: IPR013027: IPR011280; KEGG: sli:Slin_5010 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup
YP_004055333.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041: IPR004489: IPR017896: IPR006058; KEGG: dfe:Dfer_3971 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: ferredoxin; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_004055334.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: paa:Paes_0801 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: Probable sodium:solute symport protein, putative; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_004055335.1	InterPro IPR000182; KEGG: fba:FIC_01254 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_004055336.1	COGs: COG3457 amino acid racemase; InterPro IPR001608; KEGG: fba:FIC_01255 amino acid racemase; PFAM: alanine racemase domain protein; SPTR: uncharacterized protein; PFAM: Alanine racemase, N-terminal domain
YP_004055337.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR011650: IPR017439: IPR010168; KEGG: csa:Csal_1797 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Cellulose synthesis protein; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidohydrolase
YP_004055338.1	COGs: COG0787 Alanine racemase; InterPro IPR001608: IPR011079: IPR000821: IPR020622; KEGG: lbf:LBF_4162 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_004055339.1	KEGG: sli:Slin_5314 hypothetical protein; SPTR: uncharacterized protein
YP_004055340.1	InterPro IPR002696; KEGG: sli:Slin_5313 protein of unknown function DUF37; PFAM: protein of unknown function DUF37; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF37
YP_004055341.1	KEGG: sli:Slin_5312 hypothetical protein; SPTR: uncharacterized protein
YP_004055342.1	KEGG: sli:Slin_5311 hypothetical protein; SPTR: uncharacterized protein
YP_004055343.1	KEGG: sli:Slin_5310 TM2 domain containing protein; SPTR: TM2 domain containing protein; PFAM: TM2 domain
YP_004055344.1	KEGG: ccs:CCNA_00201 outer membrane protein; SPTR: uncharacterized protein
YP_004055345.1	KEGG: sli:Slin_5314 hypothetical protein; SPTR: uncharacterized protein
YP_004055346.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: oih:OB1687 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein TtheDRAFT_2097; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_004055347.1	KEGG: gem:GM21_3712 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004055348.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: gfo:GFO_3417 aerotolerance-related protein BatE; PFAM: hypothetical protein; SPTR: TPR repeat
YP_004055349.1	KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: uncharacterized protein
YP_004055350.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: hoh:Hoch_3258 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family
YP_004055351.1	KEGG: pbe:PB000559.02.0 hypothetical protein; SPTR: uncharacterized protein
YP_004055352.1	COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR004106: IPR002470: IPR002471; KEGG: gfo:GFO_3350 prolyl endopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl endopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family
YP_004055353.1	KEGG: cgr:CAGL0G03223g hypothetical protein; SPTR: Strain CBS138 chromosome G complete sequence
YP_004055354.1	InterPro IPR001623; KEGG: gfo:GFO_1973 DnaJ-like protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: DnaJ-like protein; PFAM: DnaJ domain
YP_004055355.1	KEGG: smm:Smp_046060.1 myosin heavy chain type B; SPTR: uncharacterized protein
YP_004055356.1	InterPro IPR000182; KEGG: lbz:LbrM35_V2.2970 acetyltransferase-like protein; PFAM: GCN5-related N-acetyltransferase; PRIAM: Diamine N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004055357.1	COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: protein of unknown function DUF218; SPTR: uncharacterized protein; PFAM: DUF218 domain
YP_004055358.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cpi:Cpin_5227 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Possible hydrolase; PFAM: alpha/beta hydrolase fold
YP_004055359.1	KEGG: fjo:Fjoh_2960 LVIVD repeat-containing protein; SPTR: uncharacterized protein
YP_004055360.1	COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR021135: IPR001449; KEGG: dfe:Dfer_3929 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase
YP_004055361.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: cat:CA2559_02700 metallopeptidase, M16 family protein; PFAM: peptidase M16 domain protein; PRIAM: processing peptidase; SPTR: Processing protease; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004055362.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: fjo:Fjoh_1544 peptidase M16 domain-containing protein; PFAM: peptidase M16 domain protein; PRIAM: processing peptidase; SPTR: Probable peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004055363.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611: IPR002139: IPR002173; KEGG: kko:Kkor_0952 PfkB domain protein; PFAM: PfkB domain protein; SPTR: Cell division protein FtsA; PFAM: pfkB family carbohydrate kinase
YP_004055364.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: zpr:ZPR_0250 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_004055365.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cpi:Cpin_0545 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004055366.1	COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: srm:SRM_02557 CaiB/BaiF family; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: CAIB/BAIF family; PFAM: CoA-transferase family III
YP_004055367.1	COGs: COG2001 conserved hypothetical protein; InterPro IPR020603: IPR003444; KEGG: chu:CHU_2749 MraZ-like; PFAM: MraZ domain; SPTR: Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_004055368.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: sli:Slin_4428 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_004055369.1	KEGG: chu:CHU_2747 hypothetical protein; SPTR: uncharacterized protein
YP_004055370.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460: IPR005543; KEGG: chu:CHU_2746 cell division protein, penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA domain containing protein; SPTR: Cell division protein, penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain
YP_004055371.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR000713: IPR013221: IPR004101: IPR005761; KEGG: chu:CHU_2745 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_004055372.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480: IPR018481: IPR003524; KEGG: chu:CHU_2742 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_004055373.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221: IPR004101: IPR005762: IPR018109; KEGG: fps:FP2059 UDP-N-acetylmuramoylalanine--D-glutamateligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_004055374.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: aas:Aasi_0815 hypothetical protein; PFAM: cell cycle protein; SPTR: transmembrane rod-shape determining protein; PFAM: Cell cycle protein
YP_004055375.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR004276: IPR007235: IPR006009; KEGG: fjo:Fjoh_1810 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; SPTR: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_004055376.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101: IPR005758; KEGG: sli:Slin_4753 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_004055377.1	KEGG: sli:Slin_4754 hypothetical protein; SPTR: uncharacterized protein
YP_004055378.1	COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494: IPR020823; KEGG: aas:Aasi_1248 hypothetical protein; PFAM: cell division protein FtsA; SPTR: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_004055379.1	COGs: COG0206 Cell division GTPase; InterPro IPR003008: IPR018316: IPR000158: IPR020805; KEGG: chu:CHU_2735 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_004055380.1	KEGG: chu:CHU_2718 hypothetical protein; SPTR: uncharacterized protein
YP_004055381.1	KEGG: cre:CHLREDRAFT_170889 hypothetical protein; SPTR: Predicted protein
YP_004055382.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: gau:GAU_0387 TonB-dependent outer membrane transport protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent transmembrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004055383.1	InterPro IPR000859: IPR003961; KEGG: hac:Hac_0549 vacuolating cytotoxin (VacA) paralog; PFAM: CUB protein; Fibronectin type III domain protein; SPTR: uncharacterized protein
YP_004055384.1	COGs: COG3172 ATPase/kinase involved in NAD metabolism; KEGG: cpi:Cpin_0719 NAD metabolism ATPase/kinase-like protein; SPTR: ATPase/kinase involved in NAD metabolism-like protein; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type
YP_004055385.1	COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: sde:Sde_3407 response regulator receiver domain-containing protein; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: transporter protein; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC
YP_004055386.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: gfo:GFO_0004 TerC family integral membrane protein; PFAM: Integral membrane protein TerC; SPTR: TerC family integral membrane protein; PFAM: Integral membrane protein TerC family
YP_004055387.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001440: IPR003661: IPR003594: IPR004358: IPR 019734: IPR005467: IPR013026; KEGG: chu:CHU_1092 aerobic respiration sensor-response protein; histidine protein kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; hypothetical protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; SPTR: Aerobic respiration sensor-response protein; histidine protein kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Cohesin loading factor
YP_004055388.1	COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: sli:Slin_0326 Mg-chelatase subunit ChlI-like protein; SPTR: Magnesium chelatase, subunit ChlI family protein; PFAM: Sigma-54 interaction domain
YP_004055389.1	COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: dfe:Dfer_5786 hypothetical protein; SPTR: uncharacterized protein
YP_004055390.1	KEGG: sli:Slin_2497 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF833)
YP_004055391.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: cch:Cag_1572 hypothetical protein; SPTR: WcaG protein
YP_004055392.1	InterPro IPR006694; KEGG: chu:CHU_0011 fatty acid hydroxylase; PFAM: fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PFAM: Fatty acid hydroxylase superfamily
YP_004055393.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0012 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004055394.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR001466: IPR019800; KEGG: chu:CHU_0013 b-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; beta-lactamase; SPTR: B-glycosidase, glycoside hydrolase family 3 protein; PFAM: Glycosyl hydrolase family 3 N terminal domain; Beta-lactamase
YP_004055395.1	KEGG: pgn:PGN_1554 hypothetical protein; SPTR: uncharacterized protein
YP_004055396.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR003594: IPR013507: IPR014790: IPR014763: IPR 020667; KEGG: chu:CHU_0014 DNA mismatch repair protein; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATPase ATP-binding protein; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_004055397.1	InterPro IPR002610; KEGG: dfe:Dfer_3810 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: uncharacterized protein; PFAM: Rhomboid family
YP_004055398.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: sli:Slin_5567 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004055399.1	InterPro IPR018764; KEGG: chu:CHU_0347 hypothetical protein; PFAM: Anti-sigma K factor RskA; SPTR: uncharacterized protein; PFAM: Anti-sigma-K factor rskA
YP_004055400.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR007630: IPR014284; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004055401.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR013027: IPR004099: IPR000815: IPR006258: IPR 012999; KEGG: phe:Phep_3001 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_004055402.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR002347: IPR011284: IPR020904; KEGG: sli:Slin_1373 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_004055403.1	KEGG: fps:FP0757 hypothetical protein; SPTR: uncharacterized protein
YP_004055404.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659: IPR006665: IPR006664: IPR013026: IPR 019734; KEGG: sli:Slin_5203 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; hypothetical protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004055405.1	KEGG: dfe:Dfer_1747 hypothetical protein; SPTR: uncharacterized protein
YP_004055406.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753: IPR018376; KEGG: aas:Aasi_0328 hypothetical protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004055407.1	InterPro IPR002797; KEGG: aas:Aasi_0804 hypothetical protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; permease component; PFAM: Polysaccharide biosynthesis protein
YP_004055408.1	COGs: COG0756 dUTPase; InterPro IPR008180: IPR008181; KEGG: zpr:ZPR_0069 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; PRIAM: dUTP diphosphatase; SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_004055409.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835; KEGG: chu:CHU_0020 glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form
YP_004055410.1	InterPro IPR001440: IPR019734: IPR013026: IPR003107; KEGG: dfe:Dfer_3772 TPR repeat-containing protein; PFAM: hypothetical protein; SMART: RNA-processing protein HAT helix repeating-containing protein; Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein
YP_004055411.1	KEGG: dfe:Dfer_3773 hypothetical protein; SPTR: uncharacterized protein
YP_004055412.1	COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: chu:CHU_0023 M23/M37 family peptidase; PFAM: Peptidase M23; SPTR: Possible membrane protein; possible peptidase, M23/M37 family; PFAM: Peptidase family M23
YP_004055413.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369: IPR006312; KEGG: sli:Slin_4498 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Conserved domain protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_004055414.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120: IPR004412; KEGG: chu:CHU_0025 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_004055415.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterProIPR008258: IPR018392: IPR013838: IPR000189: IPR 002482; KEGG: chu:CHU_0026 peptidoglycan-binding lytic transglycosylase; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: lytic murein transglycosylase; PFAM: Transglycosylase SLT domain; LysM domain
YP_004055416.1	KEGG: bvu:BVU_2599 hypothetical protein; SPTR: uncharacterized protein
YP_004055417.1	COGs: COG0281 Malic enzyme; InterPro IPR012301: IPR012302: IPR002505: IPR012188; KEGG: chu:CHU_0027 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: NADP-dependent malate dehydrogenase; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase
YP_004055418.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterProIPR013849: IPR000445: IPR011114: IPR000085: IPR 003583; KEGG: chu:CHU_0028 Holliday junction DNA helicase; PFAM: DNA recombination protein RuvA domain I; helix-hairpin-helix motif; RuvA domain protein; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_004055419.1	KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: SprA
YP_004055420.1	COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); InterPro IPR002930: IPR017453: IPR003016; KEGG: rbi:RB2501_03610 glycine cleavage system protein H; PFAM: glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_004055421.1	InterPro IPR006976; KEGG: chu:CHU_0031 integral membrane protein; PFAM: VanZ family protein; SPTR: uncharacterized protein; manually curated; PFAM: VanZ like family
YP_004055422.1	InterPro IPR006260: IPR003538; KEGG: pgn:PGN_0809 TonB protein; PFAM: TonB domain; SPTR: TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TC 2.C.1.1.1
YP_004055423.1	COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: aas:Aasi_1321 hypothetical protein; PFAM: protein of unknown function DUF195; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2681); RmuC family
YP_004055424.1	KEGG: cat:CA2559_08806 hypothetical protein; SPTR: uncharacterized protein
YP_004055425.1	KEGG: cpi:Cpin_0367 hypothetical protein; SPTR: uncharacterized protein
YP_004055426.1	InterPro IPR020018; KEGG: sli:Slin_5969 gliding motility-associated lipoprotein GldH; SPTR: GldH, putative; TIGRFAM: gliding motility-associated lipoprotein GldH; TIGRFAM: gliding motility-associated lipoprotein GldH
YP_004055427.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: sli:Slin_5965 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: Fjo17; PFAM: PSP1 C-terminal conserved region
YP_004055428.1	COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR000115: IPR011761: IPR020562: IPR020561: IPR 020560; KEGG: gfo:GFO_3282 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_004055430.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293: IPR018329: IPR002121: IPR014021: IPR 001650: IPR014001: IPR011545: IPR018982; KEGG: sli:Slin_5963 ATP-dependent DNA helicase RecQ; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; RQC domain; HRDC domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family
YP_004055431.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: dfe:Dfer_3883 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_004055432.1	COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: kol:Kole_0198 protein of unknown function DUF125 transmembrane; PFAM: protein of unknown function DUF125 transmembrane; SPTR: uncharacterized protein; PFAM: VIT family
YP_004055434.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR004605: IPR003593: IPR008824: IPR003959: IPR 008823; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: ATPase AAA; Holliday junction DNA helicase RuvB domain; SMART: ATPase AAA; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_004055435.1	COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR017896: IPR017900: IPR013542; KEGG: zpr:ZPR_0587 4Fe-4S binding domain-containing protein; PFAM: domain of unknown function DUF1730; SPTR: iron-sulfur cluster-binding protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative
YP_004055436.1	KEGG: dre:100009631 solute carrier family 43, member 1b; SPTR: DNA helicase II
YP_004055437.1	COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: gfo:GFO_2399 secreted protein containing DUF1343; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Secreted protein containing DUF1343; PFAM: Protein of unknown function (DUF1343)
YP_004055438.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: chu:CHU_1572 ABC transporter, permease; PFAM: protein of unknown function DUF214; SPTR: ABC transporter, permease protein; PFAM: Predicted permease
YP_004055439.1	COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805: IPR006055: IPR003141: IPR013520: IPR 004013: IPR011708: IPR004365; KEGG: rbi:RB2501_04255 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; Exonuclease RNase T and DNA polymerase III; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; Exonuclease; SPTR: DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_004055440.1	KEGG: sli:Slin_5017 hypothetical protein; SPTR: uncharacterized protein; PFAM: Hsp20/alpha crystallin family
YP_004055442.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cat:CA2559_05405 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Dolichol phosphate mannosyltransferase or dolichol phosphate beta glucosyltrandferase; PFAM: Glycosyl transferase family 2
YP_004055443.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_6620 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_004055444.1	KEGG: gfo:GFO_3620 hypothetical protein; SPTR: uncharacterized protein
YP_004055445.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: zpr:ZPR_1798 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: uncharacterized protein; PFAM: Rhodanese-like domain
YP_004055446.1	COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: cat:CA2559_05025 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2064)
YP_004055447.1	COGs: COG0264 Translation elongation factor Ts; InterPro IPR001816: IPR018101: IPR000449: IPR014039; KEGG: sli:Slin_4744 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_004055448.1	COGs: COG0052 Ribosomal protein S2; InterPro IPR005706: IPR018130: IPR001865; KEGG: sli:Slin_4743 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_004055449.1	COGs: COG0103 Ribosomal protein S9; InterPro IPR020574: IPR000754; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_004055450.1	COGs: COG0102 Ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: pdi:BDI_3487 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_004055451.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224: IPR006145; KEGG: phe:Phep_2521 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridylate synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004055452.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR005467: IPR004358: IPR003661: IPR003594; KEGG: sli:Slin_5610 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Alkaline phosphatase synthesis sensor protein PhoR; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004055453.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: chu:CHU_3042 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Response regulator DrrA; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004055454.1	COGs: COG4324 aminopeptidase; InterPro IPR014553; KEGG: sli:Slin_0009 aminopeptidase; PFAM: aminopeptidase; SPTR: Aminopeptidase; PFAM: Predicted aminopeptidase (DUF2265)
YP_004055455.1	KEGG: aas:Aasi_0404 hypothetical protein; SPTR: uncharacterized protein
YP_004055456.1	COGs: COG0468 RecA/RadA recombinase; InterProIPR013765: IPR020588: IPR020587: IPR020584: IPR 001553: IPR003593; KEGG: chu:CHU_3045 recombinase A; PFAM: RecA domain protein; SMART: ATPase AAA; SPTR: Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_004055457.1	KEGG: bcu:BCAH820_2619 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3267)
YP_004055458.1	KEGG: sli:Slin_1302 hypothetical protein; SPTR: uncharacterized protein
YP_004055459.1	InterPro IPR009056; KEGG: sli:Slin_1300 cytochrome c class I; SPTR: Major anaerobically induced transmembrane protein; PFAM: Cytochrome c
YP_004055460.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR017936: IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_004055461.1	COGs: COG1981 membrane protein; InterPro IPR005265; KEGG: zpr:ZPR_0118 membrane protein, UPF0093; PFAM: Uncharacterised protein family UPF0093; SPTR: Uncharacterized protein family (UPF0093); PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein
YP_004055462.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR012318: IPR001808; KEGG: fps:FP0703 Crp/Fnr family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; SPTR: uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_004055463.1	InterPro IPR000634; KEGG: chu:CHU_3027 hypothetical protein; SPTR: uncharacterized protein
YP_004055464.1	COGs: COG4252 transmembrane sensor domain; InterPro IPR007890; KEGG: chu:CHU_3026 hypothetical protein; PFAM: CHASE2 domain protein; SPTR: uncharacterized protein; PFAM: CHASE2 domain
YP_004055465.1	COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: bth:BT_4049 arginine/ornithine transport system ATPase; PFAM: ArgK protein; SPTR: Arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_004055466.1	InterPro IPR000601; KEGG: srm:SRM_01336 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: uncharacterized protein; PFAM: PKD domain
YP_004055467.1	COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: gfo:GFO_1866 ATP-binding domain-containing protein; PFAM: protein of unknown function DUF71 ATP-binding region; SPTR: uncharacterized protein; TIGRFAM: ATP binding protein; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain
YP_004055468.1	KEGG: zpr:ZPR_0946 membrane protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3667)
YP_004055469.1	KEGG: msv:Mesil_3075 hypothetical protein; SPTR: uncharacterized protein
YP_004055470.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: phe:Phep_2501 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Long-chain acyl-CoA thioester hydrolase family protein; PFAM: Thioesterase superfamily
YP_004055471.1	KEGG: fjo:Fjoh_0092 hypothetical protein; SPTR: surface layer protein
YP_004055472.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_1085 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor, putative; PFAM: TonB-dependent Receptor Plug Domain
YP_004055473.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: zpr:ZPR_2926 CmpR; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: CmpR; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_004055474.1	KEGG: dan:Dana_GF11551 GF11551 gene product from transcript GF11551-RA; SPTR: Isocitrate dehydrogenase
YP_004055475.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003916: IPR001750; KEGG: chl:Chy400_1925 NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_004055476.1	COGs: COG3002 conserved hypothetical protein; InterPro IPR018752; KEGG: chl:Chy400_1924 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: UPF0753 protein Chy400_1924; PFAM: Uncharacterized protein conserved in bacteria (DUF2309)
YP_004055477.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: rhi:NGR_b02990 major facilitator family transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily (MFS_1) transporter; PFAM: Major Facilitator Superfamily
YP_004055478.1	COGs: COG0655 Multimeric flavodoxin WrbA; KEGG: nwa:Nwat_1668 hypothetical protein; SPTR: Divalent cation-transport integral membrane protein mntH; PFAM: NADPH-dependent FMN reductase
YP_004055479.1	KEGG: npu:Npun_F5895 WD-40 repeat-containing protein; SPTR: WD-40 repeat protein
YP_004055480.1	KEGG: sli:Slin_0714 hypothetical protein; SPTR: uncharacterized protein
YP_004055481.1	COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR012255: IPR014730; KEGG: sli:Slin_0713 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein (Beta subunit); PFAM: Electron transfer flavoprotein domain
YP_004055482.1	COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR001308: IPR014730: IPR014731; KEGG: chu:CHU_1360 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain
YP_004055483.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR001943: IPR003729; KEGG: chu:CHU_1361 hypothetical protein; PFAM: protein of unknown function DUF151; UvrB/UvrC protein; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif
YP_004055484.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR006675: IPR003607: IPR002646: IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: TRNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_004055485.1	InterPro IPR019734: IPR013026; KEGG: tet:TTHERM_01156780 SLEI family protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004055486.1	InterPro IPR001638; KEGG: seq:SZO_06920 glutamine ABC transporter, glutamine-binding protein/permease protein; SMART: extracellular solute-binding protein family 3; SPTR: uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004055487.1	KEGG: pjd:Pjdr2_4740 restriction modification system DNA specificity domain protein; SPTR: uncharacterized protein
YP_004055488.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: msv:Mesil_1405 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC-like predicted redox protein; PFAM: OsmC-like protein
YP_004055489.1	COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR006589: IPR004193: IPR006047: IPR006048; KEGG: chu:CHU_1345 glycogen branching protein; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: Candidate glycogen branching enzyme, glycoside hydrolase family 13 protein; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain
YP_004055490.1	COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_5659 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein; Protein of unknown function (DUF1351)
YP_004055491.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002471: IPR002470; KEGG: gfo:GFO_2206 prolyl oligopeptidase; SPTR: Secreted prolyl oligopeptidase family protein; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family
YP_004055492.1	KEGG: fba:FIC_01564 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1083)
YP_004055493.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR005467: IPR004358: IPR003594; KEGG: cpi:Cpin_0952 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004055494.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078: IPR001789: IPR020441: IPR003593: IPR 002197; KEGG: dfe:Dfer_4836 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Sigma-54 dependent DNA-binding response regulator, Fis family protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004055495.1	InterPro IPR014922; KEGG: lbf:LBF_2108 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004055496.1	InterPro IPR004360; KEGG: gvi:glr0713 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glr0713 protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004055497.1	KEGG: fba:FIC_00593 hypothetical protein; SPTR: uncharacterized protein
YP_004055498.1	InterPro IPR012753: IPR007712; KEGG: tmz:Tmz1t_2336 addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; SPTR: uncharacterized protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family
YP_004055499.1	COGs: COG5499 transcription regulator containing HTH domain; InterPro IPR001387; KEGG: gfo:GFO_0922 HTH_3 family transcriptional regulator protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix motif; PFAM: Helix-turn-helix
YP_004055500.1	KEGG: bca:BCE_5203 hypothetical protein; SPTR: uncharacterized protein
YP_004055501.1	KEGG: ecv:APECO1_2051 hypothetical protein; SPTR: uncharacterized protein
YP_004055502.1	KEGG: sfr:Sfri_3614 hypothetical protein; SPTR: uncharacterized protein
YP_004055503.1	KEGG: tca:655426 similar to CG11856-PA; SPTR: uncharacterized protein
YP_004055504.1	KEGG: bcm:Bcenmc03_0427 hypothetical protein; SPTR: uncharacterized protein
YP_004055505.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cpi:Cpin_0954 efflux transporter, RND family, MFP subunit; SPTR: ABC transporter permease; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004055506.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: cpi:Cpin_0956 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transport system, ATP-binding protein; PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group
YP_004055507.1	InterPro IPR003838; KEGG: cpi:Cpin_2954 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: FtsX-related transmembrane transport protein; PFAM: Predicted permease
YP_004055508.1	InterPro IPR003838; KEGG: cpi:Cpin_0958 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: ABC transporter permease; PFAM: Predicted permease
YP_004055509.1	InterPro IPR003838; KEGG: sli:Slin_4615 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: uncharacterized protein; PFAM: Predicted permease
YP_004055510.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_4595 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: uncharacterized protein; PFAM: Predicted permease
YP_004055511.1	InterPro IPR003838; KEGG: zpr:ZPR_4641 FtsX-related transmembrane transport protein; PFAM: protein of unknown function DUF214; SPTR: FtsX-related transmembrane transport protein; PFAM: Predicted permease
YP_004055512.1	InterPro IPR003838; KEGG: cpi:Cpin_2464 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: transporter permease protein; PFAM: Predicted permease
YP_004055513.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: dfe:Dfer_4898 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transport system, ATP-binding protein; PFAM: ABC transporter
YP_004055514.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: rmr:Rmar_0066 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004055515.1	InterPro IPR002509; KEGG: dfe:Dfer_4687 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase domain protein; PFAM: Polysaccharide deacetylase
YP_004055516.1	InterPro IPR003675; KEGG: zpr:ZPR_4397 metal-dependent membrane protease; PFAM: Abortive infection protein; SPTR: Metal-dependent membrane protease; PFAM: CAAX amino terminal protease family
YP_004055517.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: dfe:Dfer_3933 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family protein; PFAM: MarR family
YP_004055518.1	InterPro IPR009894; KEGG: chu:CHU_1567 hypothetical protein; PFAM: EppA_BapA family protein; SPTR: uncharacterized protein
YP_004055519.1	KEGG: chu:CHU_1568 hypothetical protein; SPTR: uncharacterized protein
YP_004055520.1	KEGG: paa:Paes_2109 protein of unknown function DUF87; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF87
YP_004055521.1	KEGG: ptm:GSPATT00003662001 hypothetical protein; SPTR: Chromosome undetermined scaffold_8, whole genome shotgun sequence
YP_004055522.1	KEGG: cjd:JJD26997_0639 hypothetical protein; SPTR: uncharacterized protein
YP_004055523.1	KEGG: mvo:Mvol_1026 DNA-directed RNA polymerase, subunit A''; SPTR: DNA-directed RNA polymerase, subunit A''
YP_004055524.1	KEGG: cat:CA2559_06880 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0156); TIGRFAM: addiction module antidote protein, CC2985 family
YP_004055525.1	InterPro IPR007712; KEGG: cat:CA2559_06885 hypothetical protein; PFAM: plasmid stabilization system; SPTR: uncharacterized protein; PFAM: Plasmid stabilisation system protein
YP_004055526.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: vfi:VF_1675 pyrimidine reductase; PFAM: bifunctional deaminase-reductase domain protein; SPTR: Pyrimidine reductase; PFAM: RibD C-terminal domain
YP_004055527.1	KEGG: bta:520101 Ras association (RalGDS/AF-6) domain family member 6; SPTR: uncharacterized protein OSJNBa0049D13.11
YP_004055528.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR003095; KEGG: ddi:DDB_G0288639 DNAJ heat shock N-terminal domain-containing protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: DnaJ homolog subfamily C member 7 homolog; PFAM: DnaJ domain
YP_004055529.1	KEGG: phe:Phep_1930 hypothetical protein; SPTR: uncharacterized protein
YP_004055530.1	InterPro IPR019734: IPR013026: IPR001589; KEGG: zpr:ZPR_0960 thioredoxin-like protein; SPTR: uncharacterized protein
YP_004055531.1	InterPro IPR002126; KEGG: mmr:Mmar10_2493 serralysin; SMART: Cadherin; SPTR: Serralysin
YP_004055532.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: cat:CA2559_06970 hypothetical protein; PFAM: Camphor resistance CrcB protein; SPTR: CrcB protein; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_004055533.1	InterPro IPR011652; KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: uncharacterized protein
YP_004055534.1	COGs: COG0326 Molecular chaperone HSP90 family; InterProIPR001404: IPR019805: IPR020575: IPR003594: IPR 020576; KEGG: phe:Phep_0051 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATPase ATP-binding protein; SPTR: Heat shock protein 90; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_004055535.1	KEGG: dfe:Dfer_0457 hypothetical protein; SPTR: uncharacterized protein
YP_004055536.1	KEGG: gfo:GFO_1872 hypothetical protein; SPTR: uncharacterized protein
YP_004055537.1	InterPro IPR003409; KEGG: rbi:RB2501_14809 phosphatidylinositol 4-phosphate 5-kinase; PFAM: MORN repeat-containing protein; SMART: MORN repeat-containing protein; SPTR: phosphatidylinositol-4-phosphate 5-kinase; PFAM: MORN repeat
YP_004055538.1	InterPro IPR019619; KEGG: rbi:RB2501_14814 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004055539.1	KEGG: rbi:RB2501_14819 hypothetical protein; SPTR: uncharacterized protein
YP_004055540.1	KEGG: aas:Aasi_1432 hypothetical protein; SPTR: uncharacterized protein
YP_004055541.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR005467: IPR004358: IPR003661: IPR003594; KEGG: cpi:Cpin_4970 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004055542.1	InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004055543.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004055544.1	KEGG: sli:Slin_6447 hypothetical protein; SPTR: uncharacterized protein
YP_004055545.1	COGs: COG1986 conserved hypothetical protein; InterPro IPR002786; KEGG: vha:VIBHAR_01000 NTPase; PFAM: protein of unknown function DUF84; SPTR: UPF0244 protein M23134_05053; PFAM: Protein of unknown function DUF84; TIGRFAM: inosine/xanthosine triphosphatase
YP_004055546.1	COGs: COG0376 Catalase (peroxidase I); InterPro IPR000763: IPR002016: IPR019794; KEGG: dak:DaAHT2_2475 catalase/peroxidase HPI; PFAM: Haem peroxidase; SPTR: Catalase-peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI
YP_004055547.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: chu:CHU_2828 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004055548.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: chu:CHU_2829 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: Aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_004055549.1	InterPro IPR013026; KEGG: sli:Slin_5122 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide repeat domain protein
YP_004055550.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ATPase; PFAM: ABC transporter
YP_004055551.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792: IPR001789; KEGG: fjo:Fjoh_1987 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Transcriptional regulator, LuxR family protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004055552.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: dfe:Dfer_2572 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_004055553.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR005794: IPR002376: IPR005793; KEGG: dfe:Dfer_4814 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_004055554.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR005467: IPR003660: IPR004358: IPR003661: IPR 003594; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATPase ATP-binding protein; histidine kinase A domain protein; SPTR: Sensory transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004055555.1	KEGG: chu:CHU_2196 hypothetical protein; SPTR: uncharacterized protein
YP_004055556.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: chu:CHU_2195 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004055557.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: chu:CHU_2194 ABC transporter, permease; PFAM: protein of unknown function DUF140; SPTR: ABC transporter, permease; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_004055558.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR020904: IPR002347: IPR002198; KEGG: dfe:Dfer_3961 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: oxidoreductase; PFAM: short chain dehydrogenase
YP_004055559.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cts:Ctha_2154 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004055560.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: phe:Phep_3919 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Possible capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004055561.1	InterPro IPR020084: IPR000086; KEGG: chu:CHU_2668 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: uncharacterized protein; PFAM: NUDIX domain
YP_004055562.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR017871: IPR003593; KEGG: dfe:Dfer_4068 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004055564.1	KEGG: xau:Xaut_0813 hypothetical protein; SPTR: uncharacterized protein
YP_004055565.1	InterPro IPR001387; KEGG: xau:Xaut_0814 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix
YP_004055566.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019734: IPR013026: IPR001440; KEGG: cyh:Cyan8802_3282 chromosome partitioning ATPase; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: ATPase involved in chromosome partitioning-like protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Tetratricopeptide repeat
YP_004055568.1	KEGG: bpo:BP951000_0417 hypothetical protein; SPTR: uncharacterized protein
YP_004055569.1	KEGG: hch:HCH_06386 hypothetical protein; SPTR: uncharacterized protein
YP_004055570.1	KEGG: zpr:ZPR_4088 hypothetical protein; SPTR: uncharacterized protein
YP_004055571.1	KEGG: fma:FMG_0739 hypothetical protein; SPTR: DNA helicase
YP_004055572.1	KEGG: chu:CHU_2945 hypothetical protein; SPTR: uncharacterized protein
YP_004055573.1	KEGG: sbo:SBO_1137 hypothetical protein; SPTR: uncharacterized protein
YP_004055574.1	COGs: COG1002 Type II restriction enzyme methylase subunits; InterPro IPR002052: IPR002296; KEGG: mar:MAE_63060 type IIS restriction/modification enzyme; SPTR: type IIS restriction/modification enzyme; PFAM: Eco57I restriction endonuclease
YP_004055575.1	InterPro IPR004843; KEGG: chu:CHU_2932 hypothetical protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase
YP_004055577.1	KEGG: cms:CMS_2064 integral membrane efflux protein; SPTR: integral membrane efflux protein
YP_004055578.1	InterPro IPR001387; KEGG: hau:Haur_2753 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_004055579.1	KEGG: tet:TTHERM_00661510 aminotransferase, classes I and II family protein; SPTR: uncharacterized protein
YP_004055580.1	KEGG: trq:TRQ2_1139 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004055581.1	KEGG: fjo:Fjoh_2234 hypothetical protein; SPTR: uncharacterized protein
YP_004055582.1	KEGG: hsa:80321 centrosomal protein 70kDa
YP_004055583.1	KEGG: ere:EUBREC_3546 hypothetical protein; SPTR: Mobilization protein MobB
YP_004055584.1	KEGG: tye:THEYE_A0311 hypothetical protein; SPTR: uncharacterized protein
YP_004055585.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: lip:LIA029 chromosome-partitioning ATPase; SPTR: Chromosome-partitioning ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004055586.1	KEGG: zpr:ZPR_3424 DNA primase; SPTR: Mobilizable transposon, excision protein
YP_004055587.1	COGs: COG3378 ATPase; KEGG: pdi:BDI_2140 hypothetical protein; SPTR: uncharacterized protein; PFAM: Virulence-associated protein E
YP_004055588.1	InterPro IPR000551; KEGG: dat:HRM2_19080 hypothetical protein; PFAM: regulatory protein MerR; SPTR: uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family
YP_004055589.1	KEGG: pkn:PKH_112280 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004055590.1	InterPro IPR002104; KEGG: bvu:BVU_2469 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Integrase; PFAM: Phage integrase family
YP_004055591.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR006037: IPR004680; KEGG: zpr:ZPR_0525 TrkA domain protein; PFAM: Citrate transporter; TrkA-C domain protein; SPTR: TrkA domain protein; PFAM: Citrate transporter; TrkA-C domain
YP_004055592.1	InterPro IPR017963: IPR001126; KEGG: fjo:Fjoh_3568 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family
YP_004055593.1	KEGG: sad:SAAV_2020 phage tail tape measure protein; SPTR: uncharacterized protein
YP_004055594.1	InterPro IPR001387; KEGG: chu:CHU_1881 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional repressor LexA, putative; PFAM: Helix-turn-helix
YP_004055595.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bfs:BF2986 ABC transport system, membrane protein; PFAM: acriflavin resistance protein; SPTR: ABC transport system, membrane protein; PFAM: AcrB/AcrD/AcrF family
YP_004055596.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143: IPR000089; KEGG: bvu:BVU_0061 cation efflux system protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: ABC transport system, lipoprotein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004055597.1	KEGG: cqu:CpipJ_CPIJ007349 zinc finger protein 225; SPTR: Lysine-arginine-ornithine-binding periplasmic protein
YP_004055598.1	InterPro IPR019115; KEGG: zpr:ZPR_4165 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_004055599.1	InterPro IPR019115; KEGG: zpr:ZPR_4165 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_004055600.1	InterPro IPR012910; KEGG: zpr:ZPR_4162 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: uncharacterized protein
YP_004055601.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_0672 drug efflux protein; PFAM: acriflavin resistance protein; SPTR: ABC transport system, membrane protein; PFAM: AcrB/AcrD/AcrF family
YP_004055602.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576; KEGG: sli:Slin_3127 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004055603.1	COGs: COG0009 translation factor (SUA5); InterPro IPR004388: IPR006070: IPR010923: IPR005145; KEGG: chu:CHU_2418 translation factor SUA5; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein; SPTR: Sua5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004055604.1	KEGG: sbi:SORBI_09g022750 hypothetical protein; SPTR: uncharacterized protein
YP_004055605.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734: IPR013026: IPR001440; KEGG: dfe:Dfer_5044 tetratricopeptide TPR_2 repeat protein; PFAM: hypothetical protein; SPTR: Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat
YP_004055606.1	COGs: COG3268 conserved hypothetical protein; InterPro IPR005097; KEGG: ilo:IL1477 hypothetical protein; PFAM: Saccharopine dehydrogenase; SPTR: Uncharacterized conserved membrane protein; PFAM: Saccharopine dehydrogenase
YP_004055607.1	InterPro IPR000086; KEGG: dfe:Dfer_5005 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004055608.1	KEGG: amr:AM1_3691 hypothetical protein; SPTR: uncharacterized protein
YP_004055609.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: phe:Phep_4277 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004055610.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR010137: IPR001451; KEGG: chu:CHU_1036 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase (UDP-N-acetylglucosamine acetyltransferase); TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_004055611.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463: IPR010084: IPR013114; KEGG: chu:CHU_1037 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_004055612.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR007691: IPR018357: IPR020573: IPR001451; KEGG: chu:CHU_1038 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004055613.1	COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR003607; KEGG: dfe:Dfer_3017 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Phosphohydrolase; PFAM: HD domain
YP_004055614.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR013973; KEGG: sli:Slin_3042 response regulator receiver protein; PFAM: PglZ domain protein; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator; PFAM: PglZ domain; Response regulator receiver domain
YP_004055615.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: chu:CHU_2440 ATPase; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: ATPase; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_004055616.1	COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886: IPR007698; KEGG: dfe:Dfer_4962 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: Alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase
YP_004055617.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR013026: IPR019734: IPR011716: IPR001440: IPR 010822; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Stage II sporulation protein E; hypothetical protein; hypothetical protein; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004055618.1	COGs: COG2217 Cation transport ATPase; InterProIPR006403: IPR006416: IPR001757: IPR018303: IPR 001756: IPR008250: IPR005834; KEGG: zpr:ZPR_3414 copper-transporting ATPase, P-type (CopB); PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-transporting ATPase, P-type (CopB); TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004055619.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304: IPR004455; KEGG: zpr:ZPR_2279 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_004055620.1	COGs: COG0263 Glutamate 5-kinase; InterPro IPR011529: IPR001057: IPR001048; KEGG: gfo:GFO_1962 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Glutamate 5-kinase; SPTR: Glutamate 5-kinase; manually curated; PFAM: Amino acid kinase family
YP_004055621.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; InterPro IPR000965: IPR012134; KEGG: cat:CA2559_12653 hypothetical protein; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase
YP_004055622.1	InterPro IPR019777; KEGG: csc:Csac_2528 hypothetical protein; SPTR: Phenylalanine racemase (ATP-hydrolyzing)
YP_004055623.1	KEGG: sli:Slin_5493 hypothetical protein; SPTR: uncharacterized protein
YP_004055624.1	InterPro IPR013211; KEGG: dfe:Dfer_0081 LVIVD repeat protein; PFAM: LVIVD repeat-containing protein; SPTR: LVIVD repeat protein
YP_004055625.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR019734: IPR013026: IPR001440: IPR010317: IPR 010822; KEGG: lic:LIC12324 serine/threonine kinase protein; PFAM: hypothetical protein; protein of unknown function DUF916 cell surface; Stage II sporulation protein E; SMART: Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases; PFAM: Tetratricopeptide repeat; Stage II sporulation protein E (SpoIIE)
YP_004055626.1	InterPro IPR011889: IPR019775: IPR005046; KEGG: dfe:Dfer_0502 lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; SPTR: Lipoprotein; TIGRFAM: lipoprotein; PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat
YP_004055627.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035: IPR005924; KEGG: cpi:Cpin_3076 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family
YP_004055628.1	COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: chu:CHU_2342 phosphohistidine phosphatase; PFAM: Phosphoglycerate mutase; SPTR: Phosphohistidine phosphatase; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_004055629.1	COGs: COG0550 Topoisomerase IA; InterProIPR005733: IPR000380: IPR006154: IPR003601: IPR 003602: IPR006171: IPR013497; KEGG: chu:CHU_2343 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_004055630.1	COGs: COG2388 acetyltransferase; KEGG: sae:NWMN_2419 acetyltransferase, GNAT family protein; SPTR: Acetyltransferase, gnat family protein
YP_004055631.1	InterPro IPR000620; KEGG: cat:CA2559_07550 drug/metabolite transporter (dmt superfamily); PFAM: protein of unknown function DUF6 transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family; TIGRFAM: rarD protein
YP_004055632.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014: IPR005467: IPR000700: IPR004358: IPR 001610: IPR003661: IPR003594: IPR013655; KEGG: zpr:ZPR_2293 two-component system sensor histidine kinase/response regulator hybrid; PFAM: ATPase ATP-binding protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATPase ATP-binding protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: uncharacterized protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004055633.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: dfe:Dfer_3775 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004055634.1	COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: zpr:ZPR_3604 NADP-dependent monomeric type isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type
YP_004055635.1	COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: chu:CHU_3363 hypothetical protein; PFAM: protein of unknown function DUF1800; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1800)
YP_004055636.1	COGs: COG4102 conserved hypothetical protein; InterPro IPR006311: IPR010869; KEGG: chu:CHU_3364 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1501)
YP_004055637.1	KEGG: chu:CHU_3365 hypothetical protein; SPTR: uncharacterized protein
YP_004055638.1	KEGG: chu:CHU_3366 hypothetical protein; SPTR: uncharacterized protein
YP_004055639.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; KEGG: dfe:Dfer_5722 hypothetical protein; SPTR: uncharacterized protein; PFAM: Surface antigen
YP_004055640.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: rbi:RB2501_03500 small-conductance mechanosensitive channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Small-conductance mechanosensitive channel; PFAM: Mechanosensitive ion channel
YP_004055641.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR011912: IPR001509; KEGG: dfe:Dfer_2574 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: ADP-glyceromanno-heptose 6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase
YP_004055642.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: chu:CHU_1390 6-pyruvoyltetrahydropterin synthase (6-pyruvoyl tetrahydrobiopterin) synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004055643.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR012763: IPR001270: IPR003593: IPR003959; KEGG: chu:CHU_1233 DNA polymerase III, tau and gamma subunits; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: DNA polymerase III, tau and gamma subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau
YP_004055644.1	KEGG: sli:Slin_0023 DNA polymerase III, subunits gamma and tau; SPTR: DNA polymerase III, subunits gamma and tau
YP_004055645.1	KEGG: chu:CHU_1960 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3078); Protein of unknown function, DUF481
YP_004055646.1	InterPro IPR001789; KEGG: chu:CHU_3028 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator; PFAM: Response regulator receiver domain
YP_004055647.1	InterPro IPR002482: IPR008258: IPR018392; KEGG: aas:Aasi_0565 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; Lytic transglycosylase catalytic; SMART: Peptidoglycan-binding LysM; SPTR: uncharacterized protein; PFAM: Transglycosylase SLT domain; LysM domain
YP_004055648.1	COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dfe:Dfer_2897 O-methyltransferase family 3; PFAM: O-methyltransferase family 3; SPTR: O-methyltransferase family 3; PFAM: O-methyltransferase
YP_004055649.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: dfe:Dfer_2952 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase, M16 family; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004055650.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pdi:BDI_2815 mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004055651.1	InterPro IPR004300; KEGG: pdi:BDI_0210 alpha-glycosidase; PFAM: glycoside hydrolase family 57; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolase family 57
YP_004055652.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0802 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase family 4 protein; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1
YP_004055653.1	COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: chu:CHU_0803 A-glucosidase; PFAM: glycoside hydrolase family 31; PRIAM: Alpha-glucosidase; SPTR: A-glucosidase, glycoside hydrolase family 31 protein; PFAM: Glycosyl hydrolases family 31
YP_004055654.1	InterPro IPR008631; KEGG: chu:CHU_1581 glycogen synthase, glycosyltransferase family 3 protein; PFAM: glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Candidate glycogen synthase, Glycosyltransferase Family 3 protein; PFAM: Glycogen synthase
YP_004055655.1	KEGG: sli:Slin_5436 cytoplasmic protein; SPTR: uncharacterized protein
YP_004055656.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: chu:CHU_1806 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: uncharacterized protein; PFAM: zinc ribbon domain
YP_004055657.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678: IPR017221; KEGG: dfe:Dfer_5147 protein of unknown function DUF34; PFAM: protein of unknown function DUF34; SPTR: uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_004055658.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: sli:Slin_2019 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_004055659.1	KEGG: sli:Slin_2018 hypothetical protein; SPTR: uncharacterized protein
YP_004055660.1	COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: sli:Slin_1657 tRNA-hydroxylase; PFAM: tRNA-hydroxylase; SPTR: TRNA-(Ms(2)io(6)A)-hydroxylase; PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
YP_004055661.1	InterPro IPR019882; KEGG: cat:CA2559_07510 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2805); TIGRFAM: conserved hypothetical protein TIGR03643
YP_004055662.1	COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011415: IPR011642; KEGG: bvu:BVU_1218 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: uncharacterized protein; PFAM: Nucleoside recognition
YP_004055663.1	InterPro IPR002934; KEGG: bth:BT_0168 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: uncharacterized protein; PFAM: Nucleotidyltransferase domain
YP_004055664.1	COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: bth:BT_0167 hypothetical protein; PFAM: protein of unknown function DUF86; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF86
YP_004055665.1	KEGG: sli:Slin_0436 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2851)
YP_004055666.1	KEGG: chu:CHU_2695 hypothetical protein; SPTR: Membrane protein, putative
YP_004055667.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020019: IPR018357: IPR001451; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Hexapeptide transferase family protein; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_004055668.1	COGs: COG1054 sulfurtransferase; InterPro IPR001763: IPR020936; KEGG: chu:CHU_2691 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: UPF0176 protein ALPR1_03445; PFAM: Rhodanese-like domain
YP_004055669.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: cpi:Cpin_4693 purine or other phosphorylase family 1; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase II; PFAM: Phosphorylase superfamily
YP_004055670.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003594: IPR011110: IPR011123; KEGG: dsa:Desal_3328 histidine kinase; PFAM: ATPase ATP-binding protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; SMART: ATPase ATP-binding protein; SPTR: Histidine kinase; PFAM: Y_Y_Y domain; Two component regulator propeller; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004055671.1	KEGG: ppr:PBPRB0521 hypothetical protein; SPTR: uncharacterized protein
YP_004055672.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114: IPR000241; KEGG: chu:CHU_3255 RNA methylase family protein; PFAM: RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: RNA methylase family protein; PFAM: RNA methylase family UPF0020
YP_004055673.1	KEGG: dfe:Dfer_2989 hypothetical protein; SPTR: uncharacterized protein
YP_004055674.1	InterPro IPR006869; KEGG: cat:CA2559_01395 hypothetical protein; PFAM: protein of unknown function DUF547; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF547
YP_004055675.1	COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: zpr:ZPR_4195 nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004055676.1	COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: zpr:ZPR_4197 iron-sulfur binding transmembrane protein; SPTR: 4Fe-4S binding domain protein
YP_004055677.1	InterPro IPR000182; KEGG: lbf:LBF_0202 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004055678.1	KEGG: chu:CHU_0746 hypothetical protein; SPTR: uncharacterized protein; PFAM: Ribbon-helix-helix protein, copG family
YP_004055679.1	COGs: COG2337 Growth inhibitor; InterPro IPR003477; KEGG: chu:CHU_0745 growth inhibitor, PemK-like protein; PFAM: PemK family protein; SPTR: uncharacterized protein; PFAM: PemK-like protein
YP_004055680.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: phe:Phep_4273 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family
YP_004055681.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR005920: IPR006680; KEGG: fjo:Fjoh_4570 imidazolonepropionase; PFAM: amidohydrolase; SPTR: Imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase
YP_004055682.1	COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004522: IPR006195: IPR002312: IPR004365: IPR 004364; KEGG: cpi:Cpin_1004 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_004055683.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_004055684.1	KEGG: chu:CHU_3178 hypothetical protein; SPTR: Membrane protein, putative; manually curated
YP_004055685.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376: IPR001753; KEGG: cpi:Cpin_0592 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004055686.1	KEGG: aas:Aasi_0765 hypothetical protein; SPTR: uncharacterized protein
YP_004055687.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR006162: IPR000209; KEGG: chu:CHU_3033 serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Serine protease; PFAM: Subtilase family
YP_004055688.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001131: IPR007865: IPR000994; KEGG: gfo:GFO_3143 Xaa-Pro aminopeptidase; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; SPTR: Probable X-pro aminopeptidase; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24
YP_004055689.1	COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: zpr:ZPR_4198 cyclase; PFAM: cyclase family protein; SPTR: cyclase; PFAM: cyclase
YP_004055690.1	InterPro IPR000073; KEGG: lil:LA_1541 phospholipase; PFAM: alpha/beta hydrolase fold; SPTR: Prolyl oligopeptidase family; PFAM: Prolyl oligopeptidase family
YP_004055691.1	KEGG: sli:Slin_1746 hypothetical protein; SPTR: uncharacterized protein
YP_004055692.1	COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: kko:Kkor_0381 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: 2-aminomuconate deaminase; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_004055693.1	KEGG: cpc:Cpar_1949 hypothetical protein; SPTR: uncharacterized protein
YP_004055694.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: phe:Phep_0221 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor domain protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004055695.1	InterPro IPR001434: IPR013017: IPR001412: IPR001258; KEGG: sus:Acid_2879 NHL repeat-containing protein; PFAM: protein of unknown function DUF11; NHL repeat containing protein; SPTR: NHL repeat containing protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; NHL repeat; TIGRFAM: conserved repeat domain
YP_004055696.1	COGs: COG0686 Alanine dehydrogenase; InterPro IPR008141: IPR008143: IPR007886: IPR007698; KEGG: sli:Slin_2902 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase
YP_004055697.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017: IPR005475: IPR005476; KEGG: aas:Aasi_0324 hypothetical protein; PFAM: Transketolase domain-containing protein; Transketolase central region; dehydrogenase E1 component; SPTR: (Pyruvate) Oxoisovalerate Dehydrogenase Alpha and Beta Fusion, putative; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004055698.1	KEGG: aoe:Clos_2793 peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase
YP_004055699.1	KEGG: dfe:Dfer_0023 hypothetical protein; SPTR: Translation initiation factor IF-2
YP_004055700.1	InterPro IPR000326; KEGG: dfe:Dfer_0022 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase, PA-phosphatase related protein; PFAM: PAP2 superfamily
YP_004055701.1	COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910; KEGG: sru:SRU_0844 TonB-dependent outer membrane protein; PFAM: TonB-dependent receptor plug; SPTR: Iron(III) dicitrate TonB-dependent receptor, putative; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004055702.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR004620: IPR003171; KEGG: bpi:BPLAN_195 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_004055703.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR011822: IPR003726: IPR000489: IPR004223: IPR 006158: IPR003759; KEGG: gfo:GFO_0333 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; SPTR: 5-methyltetrahydrofolate:homocysteine methyltransferase-cobalamin binding domain; TIGRFAM: methionine synthase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; Protein of unknown function (DUF559); TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain
YP_004055704.1	COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR019734: IPR000792: IPR013026: IPR001440; KEGG: slo:Shew_2207 integral membrane sensor signal transduction histidine kinase; PFAM: regulatory protein LuxR; hypothetical protein; SMART: regulatory protein LuxR; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases, putative; PFAM: Bacterial regulatory proteins, luxR family; Tetratricopeptide repeat
YP_004055705.1	InterPro IPR011889: IPR002126: IPR005046; KEGG: sru:SRU_p0003 transmembrane protein, putative; PFAM: protein of unknown function DUF285 lipoprotein; SPTR: Transmembrane protein, putative; TIGRFAM: lipoprotein; PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat
YP_004055706.1	KEGG: cyp:PCC8801_2948 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004055707.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR018247: IPR012910: IPR000531; KEGG: hoh:Hoch_5117 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: exported TonB-dependent receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004055708.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639: IPR000073; KEGG: rmr:Rmar_2446 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Dihydrolipoamide acetyltransferase; PFAM: alpha/beta hydrolase fold
YP_004055709.1	KEGG: ptm:GSPATT00001105001 hypothetical protein; SPTR: uncharacterized protein
YP_004055710.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845: IPR000873; KEGG: bba:Bd0279 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme
YP_004055711.1	COGs: COG4145 Na+/panthothenate symporter; InterPro IPR001734; KEGG: rmr:Rmar_2448 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Sodium:pantothenate symporter; PFAM: Sodium:solute symporter family
YP_004055712.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747; KEGG: bba:Bd0280 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004055713.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904: IPR002347: IPR002198; KEGG: rmr:Rmar_2450 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_004055714.1	InterPro IPR006869; KEGG: htu:Htur_0561 protein of unknown function DUF547; PFAM: protein of unknown function DUF547; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF547
YP_004055715.1	KEGG: ftn:FTN_1159 gamma-glutamyltranspeptidase; SPTR: Gamma-glutamyltranspeptidase
YP_004055716.1	InterPro IPR000184; KEGG: zpr:ZPR_2202 hypothetical protein; PFAM: surface antigen (D15); SPTR: Flammulin 1; PFAM: Surface antigen
YP_004055717.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR019734: IPR013026: IPR001932: IPR001440: IPR 010822; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Stage II sporulation protein E; hypothetical protein; SMART: protein phosphatase 2C domain protein; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE); Tetratricopeptide repeat
YP_004055718.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR004739: IPR001674: IPR017926: IPR011702: IPR 000991; KEGG: dfe:Dfer_2697 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; SPTR: Bifunctional GMP synthase/glutamine amidotransferase protein; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_004055719.1	InterPro IPR019734: IPR013026; KEGG: aas:Aasi_0523 hypothetical protein; SPTR: uncharacterized protein; PFAM: Receptor family ligand binding region
YP_004055720.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR004639: IPR005814; KEGG: dfe:Dfer_1148 glutamate-1-semialdehyde aminotransferase; PFAM: aminotransferase class-III; SPTR: Glutamate-1-semialdehyde-2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_004055721.1	KEGG: uma:UM02528.1 hypothetical protein; SPTR: uncharacterized protein
YP_004055722.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153; KEGG: gfo:GFO_0743 Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TC 2.A.36
YP_004055723.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: pph:Ppha_1161 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: uncharacterized protein; PFAM: Pentapeptide repeats (8 copies)
YP_004055724.1	InterPro IPR007272; KEGG: gfo:GFO_0978 YeeE/YedE domain-containing protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_004055725.1	InterPro IPR007272; KEGG: gfo:GFO_1271 YeeE/YedE domain-containing protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_004055726.1	COGs: COG3258 Cytochrome c; InterPro IPR009056; KEGG: azo:azo2669 cytochrome c family protein; SPTR: uncharacterized protein; PFAM: Cytochrome c
YP_004055727.1	KEGG: gfo:GFO_1286 hypothetical protein; SPTR: uncharacterized protein; PFAM: outer membrane porin, OprD family
YP_004055728.1	COGs: COG2224 Isocitrate lyase; InterPro IPR000918: IPR006254: IPR018523; KEGG: fjo:Fjoh_1739 isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; SPTR: Isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: Isocitrate lyase family; TIGRFAM: isocitrate lyase
YP_004055729.1	COGs: COG2225 Malate synthase; InterPro IPR011076: IPR006252: IPR019830; KEGG: sti:Sthe_2906 malate synthase A; PFAM: Malate synthase family protein; PRIAM: Malate synthase; SPTR: Malate synthase; TIGRFAM: malate synthase A; PFAM: Malate synthase; TIGRFAM: malate synthase A
YP_004055730.1	InterPro IPR001387: IPR010359; KEGG: dfe:Dfer_2636 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; SPTR: uncharacterized protein; PFAM: Helix-turn-helix; Domain of unknown function (DUF955)
YP_004055731.1	KEGG: rbi:RB2501_09420 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004055732.1	KEGG: hla:Hlac_1511 hypothetical protein; SPTR: uncharacterized protein
YP_004055733.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: Lipoprotein, putative
YP_004055734.1	KEGG: chu:CHU_0350 hypothetical protein; SPTR: uncharacterized protein
YP_004055735.1	InterPro IPR009056; KEGG: net:Neut_1281 iron permease FTR1; SPTR: Iron permease FTR1
YP_004055736.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: cpi:Cpin_2027 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004055737.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594: IPR005467: IPR011110: IPR011123: IPR 004358; KEGG: fjo:Fjoh_4178 periplasmic ligand-binding sensor protein; PFAM: ATPase ATP-binding protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; SMART: ATPase ATP-binding protein; SPTR: Two component regulator three Y motif family; manually curated; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004055738.1	KEGG: swd:Swoo_3809 hypothetical protein; SPTR: uncharacterized protein
YP_004055740.1	KEGG: chu:CHU_1740 hypothetical protein; SPTR: uncharacterized protein
YP_004055741.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_5607 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: ABC transporter efflux protein; PFAM: Predicted permease
YP_004055742.1	KEGG: chu:CHU_1739 hypothetical protein; SPTR: uncharacterized protein
YP_004055743.1	InterPro IPR000209: IPR006162; KEGG: hoh:Hoch_5489 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Protease; PFAM: Subtilase family
YP_004055744.1	InterPro IPR012910; KEGG: zpr:ZPR_2427 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004055745.1	KEGG: zpr:ZPR_2428 hypothetical protein; SPTR: uncharacterized protein
YP_004055746.1	COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fps:FP1651 two-component system sensor; PFAM: histidine kinase internal region; SPTR: uncharacterized protein; PFAM: Histidine kinase
YP_004055747.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: zpr:ZPR_2432 two-component response transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: two-component response regulator autolysis regulator LytR; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004055748.1	COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795: IPR004161: IPR000640: IPR005225: IPR 006298; KEGG: sli:Slin_5495 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding elongation factor family protein TypA/BipA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_004055750.1	KEGG: npu:Npun_F5048 secretion protein HlyD; SPTR: Elongation factor Ts
YP_004055751.1	InterPro IPR014922; KEGG: lsp:Bsph_2455 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004055752.1	KEGG: mmr:Mmar10_1145 hypothetical protein; SPTR: uncharacterized protein
YP_004055753.1	KEGG: sdn:Sden_1975 hypothetical protein; SPTR: uncharacterized protein
YP_004055754.1	KEGG: dsi:Dsim_GD21261 GD21261 gene product from transcript GD21261-RA; SPTR: HLHm3
YP_004055755.1	InterPro IPR001387; KEGG: fps:FP0735 DNA binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: uncharacterized protein; PFAM: Helix-turn-helix
YP_004055756.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: smb:smi_0942 site-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004055757.1	KEGG: smb:smi_0943 hypothetical protein; SPTR: uncharacterized protein; PFAM: Restriction endonuclease BpuJI - N terminal
YP_004055758.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: smb:smi_0944 site-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004055759.1	InterPro IPR000326; KEGG: fps:FP2362 membrane-associated phospholipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: uncharacterized protein; PFAM: PAP2 superfamily
YP_004055760.1	COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395: IPR018170: IPR020471; KEGG: srm:SRM_01456 aldehyde reductase; PFAM: aldo/keto reductase; PRIAM: Aldehyde reductase; SPTR: Aldehyde reductase; PFAM: Aldo/keto reductase family
YP_004055761.1	InterPro IPR009056: IPR011031: IPR003088; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c3; PFAM: Class III cytochrome C family; Cytochrome c
YP_004055762.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017909: IPR017896: IPR006311; KEGG: sli:Slin_5665 iron-sulfur binding oxidoreductase; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004055763.1	COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dfe:Dfer_3475 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulfide reductase chain C; PFAM: Polysulphide reductase, NrfD
YP_004055764.1	KEGG: chu:CHU_2210 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3341)
YP_004055765.1	InterPro IPR009056; KEGG: dfe:Dfer_3473 cytochrome c family protein; SPTR: uncharacterized protein; PFAM: Cytochrome c
YP_004055766.1	KEGG: chu:CHU_2208 hypothetical protein; SPTR: uncharacterized protein
YP_004055767.1	COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429: IPR011759; KEGG: dfe:Dfer_3471 cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; SPTR: Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain
YP_004055768.1	COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: chu:CHU_2206 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I
YP_004055769.1	COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: phe:Phep_0296 cytochrome oxidase assembly; PFAM: cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly protein; PFAM: Cytochrome oxidase assembly protein
YP_004055770.1	COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); InterPro IPR000537: IPR006369; KEGG: dfe:Dfer_3468 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase
YP_004055771.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5674 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Probable cytochrome-c oxidase transmembrane protein; PFAM: Cytochrome c oxidase subunit III
YP_004055772.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5675 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III
YP_004055773.1	KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: caa(3)-type oxidase, subunit IV
YP_004055774.1	KEGG: sli:Slin_5677 electron transport protein SCO1/SenC; SPTR: uncharacterized protein
YP_004055775.1	COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: sli:Slin_5678 protein of unknown function DUF420; PFAM: protein of unknown function DUF420; SPTR: YozB; PFAM: Protein of unknown function (DUF420)
YP_004055776.1	KEGG: sli:Slin_5679 hypothetical protein; SPTR: uncharacterized protein
YP_004055777.1	COGs: COG4585 Signal transduction histidine kinase; InterProIPR019734: IPR006597: IPR003594: IPR005467: IPR 013026: IPR001440: IPR011712; KEGG: dfe:Dfer_4503 histidine kinase; PFAM: ATPase ATP-binding protein; histidine kinase dimerisation and phosphoacceptor region; hypothetical protein; SMART: ATPase ATP-binding protein; Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; SPTR: uncharacterized protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Tetratricopeptide repeat
YP_004055778.1	SPTR: Ribulose-phosphate 3-epimerase
YP_004055779.1	KEGG: zpr:ZPR_3699 protein containing GAF domain; SPTR: Protein containing GAF domain
YP_004055780.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR011282; KEGG: cat:CA2559_03185 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase
YP_004055781.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR005467: IPR001427: IPR004358; KEGG: fjo:Fjoh_1956 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase ATP-binding protein; SMART: ATPase ATP-binding protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004055782.1	InterPro IPR010916; KEGG: phe:Phep_1453 hypothetical protein; SPTR: uncharacterized protein
YP_004055783.1	InterPro IPR019756; KEGG: cat:CA2559_06830 hypothetical protein; SPTR: uncharacterized protein
YP_004055784.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0063 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004055785.1	COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719: IPR001412; KEGG: cbf:CLI_2226 PhzF family phenazine biosynthesis protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family
YP_004055786.1	COGs: COG4864 conserved hypothetical protein; KEGG: chu:CHU_3230 hypothetical protein; SPTR: uncharacterized protein; PFAM: SigmaW regulon antibacterial
YP_004055787.1	COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: chu:CHU_3229 hypothetical protein; PFAM: protein of unknown function DUF107; SPTR: uncharacterized protein; PFAM: NfeD-like
YP_004055788.1	COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR006195: IPR002314: IPR004154: IPR016061: IPR 004499; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II-like; Anticodon-binding domain protein; tRNA synthetase class II (G H P and S); PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I
YP_004055789.1	KEGG: rbi:RB2501_10527 prolyl-tRNA synthetase; SPTR: Prolyl-tRNA synthetase
YP_004055790.1	KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: uncharacterized protein
YP_004055791.1	COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: cpi:Cpin_6268 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase
YP_004055792.1	KEGG: dfe:Dfer_0221 DoxX family protein; SPTR: uncharacterized protein
YP_004055793.1	InterPro IPR011630; KEGG: chu:CHU_3224 hypothetical protein; PFAM: protein of unknown function DUF1599; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599)
YP_004055794.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489: IPR006390; KEGG: fps:FP1425 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_004055795.1	COGs: COG1624 conserved hypothetical protein; InterPro IPR003390: IPR014046; KEGG: chu:CHU_3222 hypothetical protein; PFAM: protein of unknown function DUF147; SPTR: uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159
YP_004055796.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753: IPR018376; KEGG: cpi:Cpin_6304 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004055797.1	COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; KEGG: dfe:Dfer_5113 aminotransferase class V; SPTR: Phosphoserine aminotransferase, Mycobacterial type, putative; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, putative
YP_004055798.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sli:Slin_2433 multiple antibiotic resistance (MarC)-related protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: Multiple antibiotic resistance (MarC)-related protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004055799.1	COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: chu:CHU_2706 ribonuclease HI; PFAM: ribonuclease H; PRIAM: Ribonuclease H; SPTR: Ribonuclease HI; PFAM: RNase H
YP_004055800.1	InterPro IPR018130; KEGG: cpi:Cpin_6196 hypothetical protein; SPTR: uncharacterized protein
YP_004055801.1	InterPro IPR013026; KEGG: fjo:Fjoh_1276 hypothetical protein; SPTR: uncharacterized protein
YP_004055802.1	InterPro IPR014284; KEGG: fjo:Fjoh_1275 ECF subfamily RNA polymerase sigma-24 factor; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004055803.1	KEGG: fjo:Fjoh_1273 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004055804.1	InterPro IPR000601; KEGG: fjo:Fjoh_1272 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: uncharacterized protein; PFAM: PKD domain
YP_004055805.1	COGs: COG4995 conserved hypothetical protein; InterPro IPR005479; KEGG: fjo:Fjoh_1271 hypothetical protein; SPTR: Uncharacterized protein
YP_004055806.1	COGs: COG4123 O-methyltransferase; InterPro IPR007848: IPR002052; KEGG: chu:CHU_2705 SAM-dependent methyltransferase; PFAM: methyltransferase small; SPTR: SmtA protein; PFAM: Methyltransferase small domain
YP_004055807.1	COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: cat:CA2559_01665 saccharopine dehydrogenase, putative; PFAM: Saccharopine dehydrogenase; PRIAM: Saccharopine dehydrogenase (NADP(+), L-glutamate-forming); SPTR: Saccharopine dehydrogenase, putative; PFAM: Saccharopine dehydrogenase
YP_004055808.1	COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780: IPR002052; KEGG: cpi:Cpin_2258 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: CheR methyltransferase, SAM binding domain; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_004055809.1	COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: dae:Dtox_3784 CheB methylesterase; PFAM: CheB methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase; PFAM: CheB methylesterase
YP_004055810.1	KEGG: ptm:GSPATT00037032001 hypothetical protein; SPTR: Chromosome undetermined scaffold_165, whole genome shotgun sequence
YP_004055811.1	InterPro IPR003018; KEGG: swd:Swoo_1961 multi-sensor hybrid histidine kinase; SMART: GAF domain protein; SPTR: GAF sensor hybrid histidine kinase, putative
YP_004055812.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR000014: IPR000700: IPR003660: IPR003018: IPR 013767: IPR010822; KEGG: lic:LIC12324 serine/threonine kinase protein; PFAM: PAS fold domain protein; histidine kinase HAMP region domain protein; GAF domain protein; Stage II sporulation protein E; SMART: PAS domain containing protein; SPTR: Serine/threonine protein kinases; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box
YP_004055813.1	KEGG: azl:AZL_c04650 hypothetical protein; SPTR: uncharacterized protein
YP_004055814.1	InterPro IPR018530; KEGG: lbl:LBL_2181 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004055815.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439: IPR013525: IPR017871; KEGG: pdi:BDI_1446 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; ABC-2 type transporter; SMART: ATPase AAA; SPTR: ABC-2 type transporter family; PFAM: ABC transporter; Tellurite resistance protein TerB; ABC-2 type transporter
YP_004055816.1	KEGG: brm:Bmur_0150 apolipoprotein A1/A4/E; SPTR: uncharacterized protein
YP_004055817.1	KEGG: ttu:TERTU_4390 MltA-interacting protein MipA; SPTR: uncharacterized protein
YP_004055818.1	COGs: COG0400 esterase; InterPro IPR003140; KEGG: sli:Slin_0089 hypothetical protein; PFAM: phospholipase/Carboxylesterase; SPTR: uncharacterized protein; PFAM: Phospholipase/Carboxylesterase
YP_004055819.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bth:BT_0251 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_004055820.1	COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR005834: IPR006543: IPR006549; KEGG: sli:Slin_5528 hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain
YP_004055821.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362: IPR013539: IPR004769: IPR020557; KEGG: zpr:ZPR_2104 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain-containing protein; fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase
YP_004055822.1	KEGG: dfe:Dfer_5078 hypothetical protein; SPTR: uncharacterized protein
YP_004055823.1	KEGG: chu:CHU_3583 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3127)
YP_004055824.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140; KEGG: bpf:BpOF4_16080 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YP_004055825.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006145; KEGG: pjd:Pjdr2_1275 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004055826.1	COGs: COG0681 Signal peptidase I; InterPro IPR019759: IPR000223: IPR019758; KEGG: dfe:Dfer_0210 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_004055827.1	COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846: IPR011770; KEGG: chu:CHU_2563 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_004055828.1	KEGG: rbi:RB2501_01620 hypothetical protein; SPTR: uncharacterized protein
YP_004055829.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR003115: IPR004437; KEGG: chu:CHU_2561 chromosome partitioning protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: chromosome partitioning protein parB; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_004055830.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: sli:Slin_0241 cobyrinic acid ac-diamide synthase; SPTR: SpoOJ regulator protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004055831.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128: IPR006109: IPR006168; KEGG: aas:Aasi_0284 hypothetical protein; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_004055832.1	COGs: COG2937 Glycerol-3-phosphate O-acyltransferase; InterPro IPR002123; KEGG: aas:Aasi_0283 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004055833.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: gfo:GFO_3443 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Cys/Met metabolism PLP-dependent enzyme superfamily protein; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_004055834.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: aas:Aasi_0641 hypothetical protein; PFAM: MscS Mechanosensitive ion channel; SPTR: uncharacterized protein; PFAM: Mechanosensitive ion channel
YP_004055835.1	KEGG: aas:Aasi_0597 hypothetical protein; SPTR: uncharacterized protein
YP_004055836.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034: IPR014036: IPR018356; KEGG: cpi:Cpin_0729 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: Transcriptional regulator, GntR family protein; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_004055837.1	COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076: IPR000447; KEGG: zpr:ZPR_0766 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004055838.1	COGs: COG0554 Glycerol kinase; InterPro IPR018484: IPR018485: IPR005999: IPR018483; KEGG: pdi:BDI_1816 glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase
YP_004055839.1	COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: pdi:BDI_1815 glycerol uptake facilitator protein; PFAM: major intrinsic protein; SPTR: glycerol diffusion channel; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins
YP_004055840.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: afu:AF1753 lysophospholipase; PFAM: alpha/beta hydrolase fold; SPTR: Lysophospholipase; PFAM: lysophospholipase
YP_004055841.1	COGs: COG1528 Ferritin-like protein; InterPro IPR009040: IPR008331; KEGG: aas:Aasi_0380 hypothetical protein; PFAM: Ferritin Dps family protein; SPTR: Ferritin like protein 1; PFAM: Ferritin-like domain
YP_004055842.1	COGs: COG1048 Aconitase A; InterPro IPR001030: IPR000573: IPR006248: IPR018136; KEGG: gfo:GFO_2504 aconitate hydratase; PFAM: aconitate hydratase domain-containing protein; SPTR: Aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial
YP_004055843.1	KEGG: pfh:PFHG_01405 hypothetical protein; SPTR: uncharacterized protein
YP_004055844.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004055845.1	KEGG: pru:PRU_2321 hypothetical protein; SPTR: uncharacterized protein
YP_004055846.1	COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: mba:Mbar_A0692 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_004055847.1	KEGG: cpi:Cpin_6195 hypothetical protein; SPTR: uncharacterized protein
YP_004055848.1	KEGG: coc:Coch_0140 conserved hypothetical protein, membrane; SPTR: uncharacterized protein
YP_004055849.1	KEGG: gfo:GFO_2557 hypothetical protein; SPTR: uncharacterized protein; PFAM: Transcriptional regulator PadR-like family
YP_004055850.1	COGs: COG4452 Inner membrane protein involved in colicin E2 resistance; InterPro IPR010364; KEGG: dal:Dalk_1578 hypothetical protein; PFAM: Inner membrane CreD family protein; SPTR: Inner membrane CreD family protein; PFAM: Inner membrane protein CreD
YP_004055851.1	InterPro IPR020218; KEGG: rbi:RB2501_11977 hypothetical protein; SPTR: uncharacterized protein
YP_004055852.1	COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR001753: IPR010198; KEGG: zpr:ZPR_1722 naphthoate synthase (dihydroxynaphtoic acid synthetase); PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase)
YP_004055853.1	COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; InterPro IPR012001: IPR004433; KEGG: chu:CHU_1759 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase
YP_004055854.1	KEGG: cpi:Cpin_1245 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_004055855.1	InterPro IPR018841; KEGG: cph:Cpha266_2244 hypothetical protein; PFAM: Protein of unknown function DUF2442; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2442)
YP_004055856.1	KEGG: lga:LGAS_0243 hypothetical protein; SPTR: uncharacterized protein
YP_004055857.1	KEGG: mjl:Mjls_2257 hypothetical protein; SPTR: uncharacterized protein
YP_004055858.1	COGs: COG3182 Uncharacterized iron-regulated membrane protein; KEGG: cat:CA2559_07035 iron-regulated transmembrane protein; SPTR: iron-regulated transmembrane protein
YP_004055859.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: rbi:RB2501_01086 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004055860.1	KEGG: rbi:RB2501_11637 hypothetical protein; SPTR: uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_004055861.1	KEGG: rbi:RB2501_11632 hypothetical protein; SPTR: uncharacterized protein
YP_004055862.1	COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: gfo:GFO_2366 sodium:alanine symporter family protein; PFAM: sodium:alanine symporter; SPTR: Sodium/alanine symporter; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein
YP_004055863.1	KEGG: bba:Bd0705 cell wall surface anchor family protein; SPTR: Cell wall surface anchor family protein
YP_004055864.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509: IPR008089; KEGG: chy:CHY_1057 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Conserved domain protein; PFAM: NAD dependent epimerase/dehydratase family
YP_004055865.1	COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: mru:mru_1876 CMP-N-acetylneuraminic acid synthetase NeuA; PFAM: acylneuraminate cytidylyltransferase; SPTR: CMP-N-acetylneuraminic acid synthetase NeuA; PFAM: Cytidylyltransferase
YP_004055866.1	COGs: COG2089 Sialic acid synthase; InterPro IPR006190: IPR013132: IPR013974; KEGG: dvm:DvMF_1894 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: N-acylneuraminate-9-phosphate synthase; PFAM: SAF domain; NeuB family
YP_004055867.1	KEGG: rde:RD1_4206 hypothetical protein; SPTR: uncharacterized protein; PFAM: Polysaccharide pyruvyl transferase
YP_004055868.1	KEGG: chu:CHU_2757 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF115
YP_004055869.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cpi:Cpin_4699 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Succinoglycan biosynthesis protein; PFAM: Glycosyl transferase family 2
YP_004055870.1	InterPro IPR018580; KEGG: bfs:BF4264 hypothetical protein; PFAM: Protein of unknown function, membrane YfhO; SPTR: uncharacterized protein; PFAM: Bacterial membrane protein YfhO
YP_004055871.1	KEGG: dfe:Dfer_3061 hypothetical protein; SPTR: uncharacterized protein
YP_004055872.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR001258; KEGG: rbi:RB2501_14849 L-sorbosone dehydrogenase; PFAM: NHL repeat containing protein; SPTR: L-sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase
YP_004055873.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158: IPR006099: IPR006098: IPR006159; KEGG: lic:LIC20209 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_004055874.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: aps:CFPG_558 cobalamin-dependent methylmalonyl-CoA mutase large subunit; PFAM: methylmalonyl-CoA mutase; PRIAM: Methylmalonyl-CoA mutase; SPTR: uncharacterized protein; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain