-- dump date   	20140619_125945
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003996150.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR018312:IPR001957:IPR013317:IPR013159:IPR 020591:IPR003593; KEGG: dfe:Dfer_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_003996151.1	COGs: COG1063 Threonine dehydrogenase and related ZN-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: bvu:BVU_0222 sorbitol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: Sorbitol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003996152.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: phe:Phep_0779 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Putative LacI-family transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003996153.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2610 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996154.1	InterPro IPR012944; KEGG: pru:PRU_2611 lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996155.1	InterPro IPR002105:IPR012910:IPR000531; KEGG: zpr:ZPR_1016 TonB-dependent receptor Plug domain protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent Receptor Plug domain protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996156.1	InterPro IPR012944; KEGG: zpr:ZPR_1015 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996157.1	KEGG: sli:Slin_1222 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996158.1	KEGG: fjo:Fjoh_4229 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996159.1	COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_0456 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88
YP_003996160.1	KEGG: sli:Slin_2685 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996161.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771; KEGG: dfe:Dfer_5696 ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Ketose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; manually curated; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003996162.1	COGs: COG3718 Uncharacterized protein involved in inositol metabolism; KEGG: dfe:Dfer_5701 myo-inositol catabolism IolB domain protein; SPTR: Myo-inositol catabolism IolB domain protein; PFAM: KduI/IolB family
YP_003996163.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: dfe:Dfer_5700 PfkB domain protein; PFAM: PfkB domain protein; SPTR: PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_003996164.1	COGs: COG3962 Acetolactate synthase; InterPro IPR000399:IPR012001:IPR012000:IPR011766; KEGG: dfe:Dfer_5695 thiamine pyrophosphate protein central region; PFAM: thiamine pyrophosphate central domaiN-containing protein; thiamine pyrophosphate TPP-binding domaiN-containing protein; SPTR: Thiamine pyrophosphate protein central region; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003996165.1	COGs: COG4146 symporter; InterPro IPR019900:IPR001734; KEGG: plu:plu1803 symporter YidK; PFAM: Na+/solute symporter; SPTR: Putative uncharacterized protein; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_003996166.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR010061:IPR015590; KEGG: dfe:Dfer_5699 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase
YP_003996167.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sus:Acid_1484 xylose isomerase domaiN-containing protein; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; PRIAM: Myo-inosose-2 dehydratase; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel
YP_003996168.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_5698 inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; PRIAM: Inositol 2-dehydrogenase; SPTR: Inositol 2-dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_003996169.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003996170.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003996171.1	InterPro IPR000182; KEGG: cpi:Cpin_2927 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996172.1	KEGG: fjo:Fjoh_2482 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1572)
YP_003996173.1	COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: sli:Slin_6325 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_003996174.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fps:FP1055 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: B-glycosyltransferase, glycosyltransferase family 2 protein; PFAM: Glycosyl transferase family 2
YP_003996175.1	COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: sli:Slin_6386 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein Slin_6386; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family
YP_003996176.1	COGs: COG2234 aminopeptidase; InterPro IPR007484:IPR001478; KEGG: fba:FIC_01278 WD40-like beta propeller; PFAM: peptidase M28; SMART: PDZ/DHR/GLGF domain protein; SPTR: WD40-like beta Propeller; PFAM: Peptidase family M28
YP_003996177.1	KEGG: zpr:ZPR_1231 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996178.1	KEGG: dfe:Dfer_1477 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996179.1	KEGG: dfe:Dfer_1478 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996180.1	KEGG: dfe:Dfer_1479 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996181.1	KEGG: dfe:Dfer_1480 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996182.1	KEGG: dfe:Dfer_1481 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996183.1	KEGG: phe:Phep_0201 membrane or secreted protein; SPTR: Possible membrane or secreted protein
YP_003996184.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR020565:IPR005954:IPR006543:IPR000807; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Histidinol-phosphatase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; PFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: histidinol-phosphate phosphatase family domain; histidinol-phosphatase
YP_003996185.1	KEGG: dfe:Dfer_3546 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996186.1	KEGG: phe:Phep_4231 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996187.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000838:IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5603 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003996188.1	COGs: COG0031 Cysteine synthase; InterPro IPR001216:IPR005856:IPR001926; KEGG: phe:Phep_2362 cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteine synthase; TIGRFAM: cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteine synthase B
YP_003996189.1	InterPro IPR010905; KEGG: phe:Phep_4097 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl Hydrolase Family 88; PFAM: Glycosyl Hydrolase Family 88
YP_003996190.1	KEGG: fjo:Fjoh_2151 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003996191.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: dfe:Dfer_0239 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase
YP_003996192.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: sli:Slin_1467 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Putative uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_003996193.1	InterPro IPR020084:IPR000086; KEGG: chu:CHU_2668 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: Orotate phosphoribosyltransferase; PFAM: NUDIX domain
YP_003996194.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_4270 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; manually curated; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003996195.1	KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO
YP_003996196.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_4274 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003996197.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0661 LmbE family protein; PFAM: LmbE family protein; SPTR: GlcNAc-PI de-N-acetylase family protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003996198.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR018392:IPR002482; KEGG: sli:Slin_1779 peptidase M23; PFAM: Peptidase M23; PeptidoglycaN-binding lysin domain; SMART: PeptidoglycaN-binding LysM; SPTR: Peptidase M23; PFAM: Peptidase family M23; LysM domain
YP_003996199.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cyh:Cyan8802_0039 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_003996200.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_2773 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003996201.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2772 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003996202.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: dfe:Dfer_2771 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter
YP_003996203.1	KEGG: sli:Slin_2569 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996204.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_2568 soluble ligand binding domain protein; PFAM: Soluble ligand binding domain; polysaccharide export protein; SPTR: Soluble ligand binding domain protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain
YP_003996205.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR018522:IPR003594:IPR013506:IPR001241; KEGG: dfe:Dfer_2768 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA topoisomerase type IIA subunit B region 2 domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus
YP_003996206.1	COGs: COG0077 Prephenate dehydratase; InterProIPR018528:IPR010957:IPR020822:IPR001086:IPR 008242:IPR002701; KEGG: sli:Slin_2566 chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; SPTR: Chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Prephenate dehydratase; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2
YP_003996207.1	KEGG: sli:Slin_2544 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996208.1	COGs: COG0196 FAD synthase; InterPro IPR004821:IPR002606:IPR015864:IPR015865; KEGG: sli:Slin_0790 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; cytidyltransferase-related domain
YP_003996209.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR014780:IPR002501; KEGG: zpr:ZPR_4442 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: Putative tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_003996210.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: fjo:Fjoh_0569 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_003996211.1	KEGG: dfe:Dfer_1244 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3098)
YP_003996212.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dfe:Dfer_1243 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003996213.1	InterPro IPR002123; KEGG: dfe:Dfer_4159 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase
YP_003996214.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729:IPR001943; KEGG: sli:Slin_0711 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; UvrB/UvrC protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif
YP_003996215.1	InterPro IPR014127; KEGG: chu:CHU_2841 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757
YP_003996216.1	InterPro IPR018392:IPR002482; KEGG: dfe:Dfer_5051 peptidoglycaN-binding LysM; PFAM: PeptidoglycaN-binding lysin domain; SMART: PeptidoglycaN-binding LysM; SPTR: Possible LysM domain; PFAM: LysM domain
YP_003996217.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR004528:IPR003329; KEGG: dfe:Dfer_5048 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_003996218.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: sli:Slin_3042 response regulator receiver protein; PFAM: response regulator receiver; PglZ domain protein; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: PglZ domain; Response regulator receiver domain
YP_003996219.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR017871:IPR003439:IPR003593; KEGG: sli:Slin_3028 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Cell division ATP-binding protein; PFAM: ABC transporter
YP_003996220.1	COGs: COG0176 Transaldolase; InterPro IPR018225:IPR004731:IPR001585; KEGG: cat:CA2559_10763 transaldolase; PFAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family
YP_003996221.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR004791:IPR000305:IPR001162; KEGG: sli:Slin_3221 excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: UvrABC system protein C; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrC Helix-hairpiN-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_003996222.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: zpr:ZPR_1474 glucose/sorbosone dehydrogenase; SPTR: Putative uncharacterized protein; PFAM: Glucose / Sorbosone dehydrogenase
YP_003996223.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003996224.1	COGs: COG1048 Aconitase A; InterPro IPR018136:IPR006248:IPR001030:IPR000573; KEGG: sli:Slin_2025 aconitate hydratase; PFAM: aconitate hydratase domaiN-containing protein; SPTR: Aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial
YP_003996225.1	COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR005733:IPR006171:IPR013497:IPR 006154:IPR003601:IPR003602; KEGG: sli:Slin_2030 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domaiN-containing protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domaiN-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_003996226.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: bbe:BBR47_57910 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; SPTR: Response regulator receiver; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003996227.1	KEGG: sli:Slin_6093 hypothetical protein; SPTR: P47phox
YP_003996228.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: sli:Slin_0568 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; SPTR: Asparagine synthase (Glutamine-hydrolyzing); PFAM: Asparagine synthase
YP_003996229.1	InterPro IPR005829; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SPTR: VCBS
YP_003996230.1	KEGG: dfe:Dfer_1853 lipoprotein; SPTR: Lipoprotein
YP_003996231.1	KEGG: sli:Slin_0566 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996232.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: dfe:Dfer_1211 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: Silent information regulator protein Sir2; PFAM: Sir2 family
YP_003996233.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789; KEGG: sli:Slin_4823 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003996234.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1988 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003996235.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003996236.1	InterPro IPR001021:IPR020055; KEGG: dfe:Dfer_0420 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25-like; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_003996237.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000842:IPR005946:IPR000836; KEGG: dfe:Dfer_0421 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_003996238.1	KEGG: mes:Meso_4612 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996239.1	KEGG: dfe:Dfer_0235 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996240.1	InterPro IPR000086:IPR020476; KEGG: sli:Slin_1463 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003996241.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR014001:IPR014021:IPR 014014; KEGG: sli:Slin_3330 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003996242.1	InterPro IPR010496; KEGG: rbi:RB2501_07880 probable secreted glycosyl hydrolase; PFAM: protein of unknown function DUF1080; SPTR: Probable secreted glycosyl hydrolase; PFAM: Domain of Unknown Function (DUF1080)
YP_003996243.1	COGs: COG0468 RecA/RadA recombinase; InterProIPR020584:IPR013765:IPR001553:IPR003593:IPR 020588:IPR020587; KEGG: sli:Slin_5034 RecA protein; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_003996244.1	KEGG: sli:Slin_0008 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_003996245.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476:IPR001732:IPR014026:IPR014027; KEGG: sli:Slin_3526 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_003996246.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR008089; KEGG: sli:Slin_3525 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003996247.1	KEGG: fba:FIC_01705 periplasmic protein; SPTR: Putative periplasmic protein; PFAM: Protein of unknown function (DUF2874)
YP_003996248.1	KEGG: fjo:Fjoh_0107 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2874)
YP_003996249.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR005467; KEGG: coc:Coch_1450 histidine kinase; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003996250.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: coc:Coch_1449 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003996251.1	KEGG: zpr:ZPR_1375 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996252.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR017937:IPR001763:IPR013766:IPR017936; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese domain protein; Thioredoxin domaiN-containing protein; SMART: Rhodanese domain protein; SPTR: Thioredoxin family protein; PFAM: Thioredoxin; Rhodanese-like domain
YP_003996253.1	InterPro IPR007272; KEGG: fjo:Fjoh_4883 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003996254.1	InterPro IPR007272; KEGG: cpi:Cpin_3331 protein of unknown function DUF395 YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003996255.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: phe:Phep_3734 peptidase M61 domain protein; PFAM: peptidase M61 domain protein; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase
YP_003996256.1	InterPro IPR012944; KEGG: dfe:Dfer_1439 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003996257.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1438 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996258.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710:IPR000421; KEGG: bvu:BVU_1123 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; coagulation factor 5/8 type domain protein; SPTR: Glycoside hydrolase family 43 protein; PFAM: F5/8 type C domain; Glycosyl hydrolases family 43
YP_003996259.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347; KEGG: acd:AOLE_00935 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003996260.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_1392 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Probable cAMP-binding domain containing regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003996261.1	COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: phe:Phep_1288 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_003996262.1	COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497:IPR014048:IPR000005:IPR018060; KEGG: fjo:Fjoh_1575 methylated-DNA--proteiN-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: DNA-O6-methylguanine--proteiN-cysteine S-methyltransferase / Transcriptional regulator Ada; TIGRFAM: methylated-DNA/proteiN-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; Bacterial regulatory helix-turN-helix proteins, AraC family; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_003996263.1	COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: phe:Phep_1031 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Alkylated DNA repair protein; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_003996264.1	InterPro IPR013217; KEGG: dak:DaAHT2_0375 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain
YP_003996266.1	KEGG: dfe:Dfer_5221 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996267.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: sli:Slin_3089 restriction modification system DNA specificity domain protein; PFAM: restriction modification system DNA specificity domain; SPTR: Restriction modification system DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain
YP_003996268.1	COGs: COG0286 Type I restrictioN-modification system methyltransferase subunit; InterPro IPR002052:IPR003356:IPR002296; KEGG: sli:Slin_3088 site-specific DNA-methyltransferase (adenine-specific); PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Site-specific DNA-methyltransferase (Adenine-specific); PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_003996269.1	KEGG: pvx:PVX_114340 SNF2 family N-terminal domain containing protein; SPTR: Cell surface protein
YP_003996270.1	KEGG: fjo:Fjoh_0088 hypothetical protein; SPTR: Probable transposase; PFAM: Transposase IS200 like
YP_003996271.1	COGs: COG4096 Type I site-specific restrictioN-modification system R (restriction) subunit and related helicase; InterProIPR007409:IPR006935:IPR013670:IPR014001:IPR 014021:IPR001650; KEGG: sli:Slin_3086 type I site-specific deoxyribonuclease; PFAM: EcoEI R domain protein; type III restriction protein res subunit; protein of unknown function DUF450; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: Type I site-specific deoxyribonuclease; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; EcoEI R protein C-terminal
YP_003996272.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_6177 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Putative AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996273.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347; KEGG: mab:MAB_0717 dehydrogenase/reductase; SPTR: Probable dehydrogenase/reductase; PFAM: short chain dehydrogenase
YP_003996274.1	COGs: COG3631 Ketosteroid isomerase-related protein; InterPro IPR009959; KEGG: bcg:BCG9842_B4455 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Ketosteroid isomerase-related proteiN-like protein; PFAM: SnoaL-like polyketide cyclase
YP_003996275.1	InterPro IPR004843; KEGG: cpi:Cpin_0975 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase; PFAM: CalcineuriN-like phosphoesterase
YP_003996276.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_1587 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family
YP_003996278.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR001357:IPR006055; KEGG: cpe:CPE1401 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; BRCT domain protein; SMART: Exonuclease; SPTR: Probable DNA polymerase III epsilon chain; PFAM: Exonuclease; BRCA1 C Terminus (BRCT) domain
YP_003996280.1	COGs: COG3183 restriction endonuclease; InterPro IPR002711; KEGG: bai:BAA_3822 hypothetical protein; PFAM: HNH endonuclease; SPTR: Putative uncharacterized protein; PFAM: HNH endonuclease
YP_003996281.1	KEGG: pmo:Pmob_0629 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996282.1	COGs: COG2184 Protein involved in cell division; InterPro IPR003812; KEGG: bgr:Bgr_p00180 cell filamentation protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Putative uncharacterized protein; manually curated; PFAM: Fic/DOC family
YP_003996283.1	KEGG: cch:Cag_1364 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996284.1	COGs: COG4422 Bacteriophage protein gp37; InterPro IPR011101; KEGG: cph:Cpha266_1493 phage Gp37Gp68 family protein; PFAM: Gp37Gp68 family protein; SPTR: Phage Gp37Gp68 family protein; PFAM: Phage protein Gp37/Gp68
YP_003996285.1	KEGG: dal:Dalk_4264 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996287.1	KEGG: bcm:Bcenmc03_2492 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996288.1	KEGG: tet:TTHERM_00992990 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996289.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: coc:Coch_0145 integrase family protein; PFAM: integrase family protein; SPTR: Integrase; PFAM: Phage integrase family
YP_003996290.1	SPTR: Putative uncharacterized protein
YP_003996291.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: fjo:Fjoh_2979 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003996292.1	InterPro IPR017686; KEGG: fjo:Fjoh_2980 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage/plasmid-related protein TIGR03299; PFAM: Domain of unknown function (DUF932); TIGRFAM: phage/plasmid-related protein TIGR03299
YP_003996293.1	KEGG: ath:AT2G32950 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitiN-protein ligase; SPTR: Putative uncharacterized protein
YP_003996294.1	KEGG: enc:ECL_03140 rhs family protein; SPTR: Putative uncharacterized protein
YP_003996295.1	InterPro IPR022273; KEGG: fjo:Fjoh_2981 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein E; TIGRFAM: PRTRC system protein E
YP_003996296.1	KEGG: fjo:Fjoh_2983 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein C
YP_003996297.1	KEGG: fjo:Fjoh_2984 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996298.1	KEGG: fjo:Fjoh_2985 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein B
YP_003996299.1	InterPro IPR000594; KEGG: fjo:Fjoh_2986 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF family NAD/FAD binding protein; PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein
YP_003996300.1	KEGG: fjo:Fjoh_2998 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: GIY-YIG catalytic domain
YP_003996301.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: bpf:BpOF4_05695 two-component response regulator of extracellular degradative enzyme; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Possible response regulator; PFAM: Response regulator receiver domain
YP_003996302.1	KEGG: dfe:Dfer_0334 hypothetical protein; SPTR: Possible response regulator
YP_003996303.1	KEGG: bfs:BF1794 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family
YP_003996304.1	KEGG: bfs:BF1793 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996305.1	KEGG: dfe:Dfer_2363 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996306.1	KEGG: bfr:BF0113 hypothetical protein; SPTR: Conserved protein found in conjugate transposon
YP_003996307.1	InterPro IPR018899; KEGG: bfr:BF1350 conjugate transposon protein TraO; PFAM: Conjugative transposon protein TraO; SPTR: Protein found in conjugate transposon TraO; PFAM: Conjugative transposon protein TraO
YP_003996308.1	KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein
YP_003996309.1	KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein
YP_003996310.1	KEGG: pmx:PERMA_A0011 DNA replication protein DnaC; SPTR: Putative uncharacterized protein
YP_003996311.1	KEGG: hmg:100198550 hypothetical protein LOC100198550; SPTR: Putative uncharacterized protein
YP_003996312.1	KEGG: fjo:Fjoh_3001 hypothetical protein; SPTR: Conjugative transposon protein TraK; TIGRFAM: Bacteroides conjugative transposon TraK protein
YP_003996313.1	InterPro IPR012424; KEGG: fjo:Fjoh_3002 TraJ family protein conjugative transposon; PFAM: TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein
YP_003996314.1	KEGG: fjo:Fjoh_3003 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraI
YP_003996315.1	COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: fjo:Fjoh_3004 type IV secretory pathway VirB4 components-like protein; SPTR: Protein found in conjugate transposon; TIGRFAM: Bacteroides conjugation system ATPase, TraG family
YP_003996316.1	KEGG: fjo:Fjoh_3005 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996317.1	KEGG: fjo:Fjoh_3006 hypothetical protein; SPTR: Protein found in conjugate transposon
YP_003996318.1	KEGG: cpv:cgd1_3240 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996319.1	KEGG: fjo:Fjoh_3014 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996320.1	KEGG: fjo:Fjoh_3015 hypothetical protein; SPTR: Protein found in conjugate transposon; PFAM: Protein of unknown function (DUF3408)
YP_003996321.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fjo:Fjoh_3016 chromosome partitioning ATPase; SPTR: Protein found in conjugate transposon; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003996323.1	KEGG: fjo:Fjoh_3017 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996324.1	InterPro IPR005094; KEGG: fjo:Fjoh_3018 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain
YP_003996325.1	KEGG: cpi:Cpin_3010 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996326.1	KEGG: fjo:Fjoh_3019 hypothetical protein; SPTR: Mobilization protein; PFAM: TraG/TraD family
YP_003996327.1	COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_003996328.1	InterPro IPR015082; KEGG: bth:BT_2325 hypothetical protein; PFAM: Domain of unknown function DUF1896; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1896)
YP_003996329.1	KEGG: bcu:BCAH820_4373 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996330.1	KEGG: tet:TTHERM_00657240 Guanylate-binding protein, N-terminal domain containing protein; SPTR: Putative uncharacterized protein
YP_003996331.1	InterPro IPR018873; KEGG: ddf:DEFDS_0289 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; PFAM: ORF6N domain
YP_003996332.1	COGs: COG0550 Topoisomerase IA; InterProIPR018089:IPR005738:IPR006171:IPR013497:IPR 000380:IPR006154:IPR003601:IPR003602; KEGG: fjo:Fjoh_3021 DNA topoisomerase; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domaiN-containing protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domaiN-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase III; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid
YP_003996333.1	KEGG: fjo:Fjoh_3022 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996334.1	KEGG: fjo:Fjoh_3023 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996335.1	KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996336.1	InterPro IPR018534; KEGG: fjo:Fjoh_3024 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein RteC family protein; PFAM: RteC protein
YP_003996337.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR000005:IPR020449:IPR018060; KEGG: fjo:Fjoh_4441 helix-turN-helix domaiN-containing protein; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996338.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347; KEGG: cpi:Cpin_0128 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003996339.1	KEGG: fjo:Fjoh_4445 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1097)
YP_003996340.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347; KEGG: cpi:Cpin_0127 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003996341.1	COGs: COG0604 NADPH:quinone reductase and related ZN-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: cpi:Cpin_4859 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Possible NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003996342.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060; KEGG: cpi:Cpin_5386 transcriptional regulator, AraC family; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996343.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_1587 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family
YP_003996344.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_2324 helix-turN-helix domaiN-containing protein; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Helix-turN-helix-domain containing protein, AraC type; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996345.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR020471; KEGG: sli:Slin_1860 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003996346.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018062:IPR000005:IPR020449:IPR018060; KEGG: cpi:Cpin_4585 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996347.1	COGs: COG1359 conserved hypothetical protein; InterPro IPR007138; KEGG: pat:Patl_3536 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase
YP_003996348.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR020904:IPR002198:IPR002347; KEGG: cpi:Cpin_3798 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003996349.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: dfe:Dfer_4686 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Putative oxidoreductase; PFAM: Aldo/keto reductase family
YP_003996350.1	KEGG: cpi:Cpin_0125 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996351.1	InterPro IPR017871; KEGG: cpi:Cpin_0126 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996352.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002198:IPR002347; KEGG: cgt:cgR_0065 hypothetical protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; PFAM: short chain dehydrogenase
YP_003996353.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR000634:IPR001395; KEGG: pmy:Pmen_3155 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Putative uncharacterized protein; PFAM: Aldo/keto reductase family
YP_003996354.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: dze:Dd1591_2284 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_003996355.1	KEGG: bmy:Bm1_10115 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996356.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: sme:SMa0322 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Flavin reductase like domain
YP_003996357.1	COGs: COG0604 NADPH:quinone reductase and related ZN-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: epy:EpC_25070 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003996358.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_5575 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family
YP_003996359.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002198:IPR002347; KEGG: bld:BLi02171 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase
YP_003996360.1	InterPro IPR018534; KEGG: fjo:Fjoh_4473 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein; PFAM: RteC protein
YP_003996361.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: zpr:ZPR_1379 prolyl oligopeptidase family; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Prolyl oligopeptidase family; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003996362.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterProIPR018062:IPR013096:IPR000005:IPR020449:IPR 018060; KEGG: cpi:Cpin_5587 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family; AraC-like ligand binding domain
YP_003996363.1	COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR004402:IPR000845; KEGG: gym:GYMC10_5646 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase deoD-type; TIGRFAM: purine nucleoside phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)
YP_003996364.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR015590:IPR011408; KEGG: fba:FIC_01836 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003996365.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915; KEGG: fba:FIC_01837 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_003996366.1	KEGG: dfe:Dfer_3756 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996367.1	COGs: COG1015 Phosphopentomutase; InterPro IPR010045:IPR006124; KEGG: tte:TTE0463 phosphopentomutase; PFAM: metalloenzyme domain protein; PRIAM: Phosphopentomutase; SPTR: Phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase
YP_003996368.1	KEGG: sli:Slin_3024 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996369.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR005479:IPR006275:IPR005481:IPR005480:IPR 005483:IPR011761; KEGG: dfe:Dfer_2476 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; SPTR: Carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_003996370.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V); PFAM: Uncharacterized conserved protein (DUF2075)
YP_003996371.1	KEGG: dfe:Dfer_4725 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996372.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR015590; KEGG: cpi:Cpin_2318 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003996373.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sli:Slin_5437 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_003996374.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: dfe:Dfer_1088 Fmu (Sun) domain protein; PFAM: Fmu (Sun) domain protein; SPTR: Putative sun protein; PFAM: NOL1/NOP2/sun family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB
YP_003996375.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: dfe:Dfer_0419 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_003996376.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2585 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_003996377.1	KEGG: sli:Slin_2584 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996378.1	InterPro IPR010916:IPR013026; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723)
YP_003996379.1	COGs: COG1428 Deoxynucleoside kinase; InterPro IPR001977:IPR002624; KEGG: dfe:Dfer_0477 deoxynucleoside kinase; PFAM: deoxynucleoside kinase; Dephospho-CoA kinase; SPTR: Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase
YP_003996380.1	COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: dfe:Dfer_0474 stationary phase survival protein SurE; PFAM: Survival protein SurE; SPTR: Stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_003996381.1	InterPro IPR009056; KEGG: chu:CHU_2867 cytochrome c-related protein; SPTR: Class I diheme cytochrome c; PFAM: Cytochrome c
YP_003996382.1	InterPro IPR020084:IPR000086; KEGG: dfe:Dfer_0471 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003996383.1	COGs: COG0491 ZN-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_003996384.1	InterPro IPR002781; KEGG: pgi:PG1572 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Membrane protein, putative; PFAM: Sulfite exporter TauE/SafE
YP_003996385.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family
YP_003996386.1	COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: dfe:Dfer_2016 protein of unknown function DUF814; PFAM: protein of unknown function DUF814; FibronectiN-binding A domain protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF814); FibronectiN-binding protein A N-terminus (FbpA)
YP_003996387.1	KEGG: act:ACLA_091860 proteiN-ER retention receptor, putative; SPTR: ProteiN-ER retention receptor, putative
YP_003996388.1	COGs: COG3186 Phenylalanine-4-hydroxylase; InterPro IPR019774; KEGG: phe:Phep_3273 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like; SPTR: Phenylalanine-4-hydroxylase; PFAM: BiopteriN-dependent aromatic amino acid hydroxylase
YP_003996389.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347; KEGG: phe:Phep_3274 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Probable dehydrogenase/reductase; PFAM: short chain dehydrogenase
YP_003996390.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: dfe:Dfer_2951 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16 domain protein; manually curated; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003996391.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR020555:IPR003526; KEGG: phe:Phep_4060 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_003996392.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020625:IPR005263:IPR002220; KEGG: dfe:Dfer_5112 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_003996393.1	InterPro IPR000326; KEGG: bfs:BF4336 transmembrane PAP2-family protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Putative uncharacterized protein; PFAM: PAP2 superfamily
YP_003996394.1	KEGG: sli:Slin_1397 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996395.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_5034 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003996396.1	KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S1/P1 Nuclease
YP_003996397.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dfe:Dfer_5477 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_003996398.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_2026 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003996399.1	KEGG: fjo:Fjoh_1378 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104)
YP_003996400.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176; KEGG: dfe:Dfer_2024 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_003996401.1	KEGG: dfe:Dfer_1952 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996402.1	KEGG: fjo:Fjoh_1188 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996403.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003996404.1	InterPro IPR011110; KEGG: cpi:Cpin_3143 two component regulator propeller domain protein; PFAM: Two component regulator propeller; SPTR: GGDEF domain protein; PFAM: Two component regulator propeller
YP_003996405.1	COGs: COG0438 Glycosyltransferase; InterPro IPR012821:IPR001296:IPR006380; KEGG: dak:DaAHT2_1337 sucrose-phosphate synthase; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase; PFAM: Sucrose synthase; Glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, putative, glycosyltransferase domain; HAD-superfamily hydrolase, subfamily IIB; sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial
YP_003996406.1	InterPro IPR000595; KEGG: dhd:Dhaf_3071 transcriptional regulator, Crp/Fnr family; SPTR: Cyclic nucleotide binding regulatory protein
YP_003996407.1	InterPro IPR002514; KEGG: paa:Paes_2107 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003996408.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: gfo:GFO_1996 integrase/transposase; PFAM: Integrase catalytic region; SPTR: Integrase; PFAM: Integrase core domain
YP_003996409.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018062:IPR011110:IPR011123:IPR003661:IPR 003594:IPR001789:IPR000005:IPR004358:IPR018060:IPR005467; KEGG: pru:PRU_2699 sensor histidine kinase/DNA-binding response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Putative uncharacterized protein; PFAM: Y_Y_Y domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996410.1	InterPro IPR012910:IPR000531; KEGG: pru:PRU_2697 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003996411.1	InterPro IPR012944; KEGG: pru:PRU_2696 lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996412.1	COGs: COG0627 esterase; InterPro IPR000801; KEGG: dfe:Dfer_0298 esterase; PFAM: esterase; SPTR: Putative uncharacterized protein; PFAM: Putative esterase
YP_003996413.1	COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: pdi:BDI_2687 glycosylhydrolase; PFAM: esterase; glycoside hydrolase family 13 domain protein; SPTR: Putative esterase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase
YP_003996414.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR017975:IPR019800:IPR001764:IPR002772; KEGG: pdi:BDI_2428 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Glycoside hydrolase family 3 protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003996415.1	COGs: COG0627 esterase; InterPro IPR000801; KEGG: srm:SRM_02222 esterase; PFAM: esterase; SPTR: Putative esterase superfamily protein; PFAM: Putative esterase
YP_003996416.1	COGs: COG2851 H+/citrate symporter; InterPro IPR014738:IPR004680; KEGG: sli:Slin_4146 citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; SPTR: Citrate/H+ symporter, CitMHS family; TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TIGRFAM: citrate transporter, CitMHS family
YP_003996417.1	InterPro IPR010839; KEGG: sli:Slin_4147 protein of unknown function DUF1446; PFAM: protein of unknown function DUF1446; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1446)
YP_003996418.1	KEGG: sli:Slin_4148 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996419.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2778 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003996420.1	KEGG: sli:Slin_2779 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996422.1	InterPro IPR013096; KEGG: dfe:Dfer_1447 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_003996423.1	InterPro IPR000801; KEGG: aca:ACP_2491 lipoprotein; PFAM: esterase; SPTR: Putative secreted protein; PFAM: Putative esterase
YP_003996424.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: fjo:Fjoh_2187 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase
YP_003996425.1	KEGG: sli:Slin_1619 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996426.1	KEGG: msv:Mesil_3342 phosphoribosylglycinamide synthetase, N-domain protein; SPTR: Phosphoribosylglycinamide synthetase, N-domain protein
YP_003996427.1	KEGG: phu:Phum_PHUM430290 ankyrin repeat-containing protein, putative; SPTR: TonB-dependent receptor plug domain protein
YP_003996428.1	KEGG: dfe:Dfer_4527 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996429.1	InterPro IPR007372; KEGG: dfe:Dfer_0371 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003996430.1	COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: cpi:Cpin_3791 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_003996431.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_1841 response regulator receiver; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003996432.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_1842 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Histidine kinase internal region; PFAM: Histidine kinase
YP_003996433.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR000005:IPR020449:IPR018060; KEGG: cpi:Cpin_3787 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996434.1	InterPro IPR000182:IPR000835; KEGG: fjo:Fjoh_4033 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; SPTR: GNAT family acetyltransferase; PFAM: Acetyltransferase (GNAT) family; MarR family
YP_003996435.1	KEGG: phe:Phep_3161 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996436.1	COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: cpi:Cpin_4003 small multidrug resistance protein; PFAM: small multidrug resistance protein; SPTR: Small multidrug resistance protein; PFAM: Small Multidrug Resistance protein
YP_003996437.1	InterPro IPR000595; KEGG: fjo:Fjoh_3294 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; manually curated; PFAM: Cyclic nucleotide-binding domain
YP_003996438.1	COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dfe:Dfer_2981 protein of unknown function DUF486; PFAM: protein of unknown function DUF486; SPTR: Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function, DUF486
YP_003996439.1	COGs: COG3503 membrane protein; KEGG: sli:Slin_2897 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1624)
YP_003996440.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR018195:IPR010916:IPR002469; KEGG: sli:Slin_2851 peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003996441.1	KEGG: fba:FIC_01559 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996442.1	KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996443.1	COGs: COG4892 heme/steroid binding protein; InterPro IPR001199; KEGG: phe:Phep_3698 cytochrome b5; PFAM: cytochrome b5; SPTR: Putative uncharacterized protein; PFAM: Cytochrome b5-like Heme/Steroid binding domain
YP_003996444.1	KEGG: chu:CHU_3269 hypothetical protein; SPTR: Phosphatidate cytidylyltransferase
YP_003996445.1	KEGG: sli:Slin_3077 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996446.1	COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicilliN-binding protein 4); InterPro IPR000667; KEGG: sli:Slin_2717 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine- endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
YP_003996447.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: dfe:Dfer_5620 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_003996448.1	COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; InterPro IPR001095:IPR020582:IPR011763; KEGG: dfe:Dfer_5619 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_003996449.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402:IPR005834:IPR005833; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003996450.1	InterPro IPR008915; KEGG: sli:Slin_2710 peptidase M50; PFAM: peptidase M50; SPTR: Peptidase M50; PFAM: Peptidase family M50
YP_003996451.1	InterPro IPR002123; KEGG: gfo:GFO_1494 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acyltransferase
YP_003996452.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dfe:Dfer_2612 cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase
YP_003996453.1	COGs: COG5587 conserved hypothetical protein; InterPro IPR015996:IPR012808; KEGG: dfe:Dfer_0426 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: Putative uncharacterized protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453
YP_003996454.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: dfe:Dfer_0423 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: TryptophaN--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_003996455.1	InterPro IPR000326; KEGG: coc:Coch_0468 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Phosphoesterase PA-phosphatase related; PFAM: PAP2 superfamily
YP_003996456.1	COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: cts:Ctha_1316 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2147)
YP_003996457.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR020471; KEGG: rlg:Rleg_2612 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003996458.1	KEGG: bth:BT_0948 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996459.1	KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996460.1	KEGG: nwi:Nwi_1613 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996461.1	KEGG: tde:TDE1611 hypothetical protein; SPTR: Conserved domain protein
YP_003996462.1	KEGG: rbi:RB2501_07085 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996463.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003996464.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rbi:RB2501_10797 rrf2 family protein (transcriptional regulator); PFAM: protein of unknown function UPF0074; SPTR: Rrf2 family protein (Putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_003996465.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: cpi:Cpin_5783 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I
YP_003996466.1	COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR009056:IPR003468:IPR003088; KEGG: dfe:Dfer_1787 cytochrome c oxidase mono-heme subunit/FixO; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; SPTR: Cytochrome C oxidase mono-heme subunit/FixO; PFAM: Cytochrome c; Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II
YP_003996467.1	KEGG: cpi:Cpin_3779 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996468.1	KEGG: fps:FP0917 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_003996469.1	KEGG: sil:SPOA0172 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Hexameric tyrosine-coordinated heme protein (HTHP)
YP_003996470.1	COGs: COG2346 Truncated hemoglobins; KEGG: gfo:GFO_1394 globin family protein; SPTR: Bacterial-like globin family protein; PFAM: Bacterial-like globin
YP_003996471.1	KEGG: wch:wcw_0477 hypothetical protein; SPTR: Putative membrane protein
YP_003996472.1	COGs: COG2846 Regulator of cell morphogenesis and NO signaling; InterPro IPR007500:IPR012312:IPR019903; KEGG: gfo:GFO_1401 nitric oxide-dependent regulator; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; SPTR: Nitric oxide-dependent regulator; TIGRFAM: iroN-sulfur cluster repair di-iron protein; PFAM: Domain of Unknown function (DUF542); Hemerythrin HHE cation binding domain; TIGRFAM: iroN-sulfur cluster repair di-iron protein
YP_003996473.1	KEGG: cbk:CLL_A3602 inner membrane protein translocase component YidC; SPTR: Putative sporulation protein/membrane protein insertase, OxaA family
YP_003996474.1	KEGG: tet:TTHERM_00577100 Kelch motif family protein; SPTR: Putative uncharacterized protein
YP_003996475.1	KEGG: pcs:Pc20g02960 Pc20g02960; SPTR: ABC-2 type transporter
YP_003996476.1	COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR006058:IPR002888:IPR006311; KEGG: fjo:Fjoh_4202 2Fe-2S iroN-sulfur cluster binding domaiN-containing protein; PFAM: [2Fe-2S]-binding domaiN-containing protein; ferredoxin; SPTR: Oxidoreductase, iroN-sulphur binding subunit; PFAM: 2Fe-2S iroN-sulfur cluster binding domain; [2Fe-2S] binding domain
YP_003996477.1	COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterPro IPR016166:IPR002346:IPR005107; KEGG: pst:PSPTO_4651 oxidoreductase, molybdopteriN-binding subunit; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; SPTR: Oxidoreductase, molybdopteriN-binding subunit; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain
YP_003996478.1	COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274; KEGG: cpi:Cpin_2168 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; SPTR: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; PFAM: MolybdopteriN-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
YP_003996479.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003996480.1	InterPro IPR000182; KEGG: fjo:Fjoh_4884 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996481.1	InterPro IPR005181; KEGG: sli:Slin_2555 protein of unknown function DUF303 acetylesterase putative; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303)
YP_003996482.1	COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sus:Acid_0712 hypothetical protein; PFAM: glycoside hydrolase family 16; SPTR: Agarase; PFAM: Glycosyl hydrolases family 16
YP_003996483.1	COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR006101; KEGG: sli:Slin_0624 beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Di-glucose binding within endoplasmic reticulum; Glycosyl hydrolases family 2, sugar binding domain
YP_003996484.1	InterPro IPR012944; KEGG: rmr:Rmar_1078 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996485.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_2077 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996486.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR018062:IPR 011110:IPR011123:IPR003661:IPR003594:IPR000005:IPR004358; KEGG: bth:BT_3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Putative uncharacterized protein; PFAM: Y_Y_Y domain; Two component regulator propeller; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996487.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: dfe:Dfer_3128 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turN-helix domain
YP_003996488.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6448 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996489.1	InterPro IPR012944; KEGG: dfe:Dfer_1849 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996490.1	KEGG: bfs:BF0974 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CalcineuriN-like phosphoesterase
YP_003996491.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_0456 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003996492.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953:IPR001613; KEGG: phe:Phep_0457 hypothetical protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: Putative uncharacterized protein; PFAM: FAD binding domain
YP_003996493.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: phe:Phep_0458 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003996494.1	InterPro IPR011701; KEGG: dfe:Dfer_3129 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: polyol permease family
YP_003996495.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: phe:Phep_3505 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_003996496.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: dfe:Dfer_3131 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003996497.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: dfe:Dfer_3132 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003996498.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR001345:IPR013078; KEGG: phe:Phep_3502 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family
YP_003996499.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: pdi:BDI_3922 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_003996500.1	COGs: COG1957 Inosine-uridine nucleoside N-ribohydrolase; InterPro IPR001969:IPR001910; KEGG: gym:GYMC10_4824 inosine/uridine-preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; SPTR: Inosine/uridine-preferring nucleoside hydrolase; PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_003996501.1	KEGG: bth:BT_2802 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996502.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611:IPR011877:IPR002139; KEGG: pdi:BDI_1657 ribokinase; PFAM: PfkB domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase
YP_003996503.1	InterPro IPR001910; KEGG: bth:BT_2808 inosine-uridine preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; SPTR: Putative uncharacterized protein; PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_003996504.1	InterPro IPR010651; KEGG: pdi:BDI_1654 integral membrane protein; PFAM: sugar transport family protein; SPTR: Integral membrane protein; PFAM: Fatty acid elongase 3-ketoacyl-CoA synthase 1
YP_003996505.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_2227 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996506.1	InterPro IPR012944; KEGG: fjo:Fjoh_2021 RagB/SusD domaiN-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996507.1	KEGG: kfl:Kfla_4192 carbohydrate binding family 6; SPTR: Putative uncharacterized protein
YP_003996508.1	KEGG: kfl:Kfla_4525 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_003996509.1	KEGG: kfl:Kfla_4192 carbohydrate binding family 6; SPTR: Putative uncharacterized protein
YP_003996510.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR006402:IPR006439:IPR005833; KEGG: vex:VEA_000391 2-deoxyglucose-6-phosphate hydrolase YniC; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Possible phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003996511.1	COGs: COG0819 Putative transcription activator; InterPro IPR004305; KEGG: cat:CA2559_10853 transcriptional activator (TenA family); PFAM: TENA/THI-4 domaiN-containing protein; SPTR: Putative transcriptional activator (TenA family); PFAM: TENA/THI-4/PQQC family
YP_003996512.1	COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: zpr:ZPR_1974 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; PRIAM: Phosphomethylpyrimidine kinase; SPTR: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_003996513.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: zpr:ZPR_1975 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: Thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_003996514.1	COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family; InterPro IPR011144:IPR000417; KEGG: zpr:ZPR_1976 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; PRIAM: Hydroxyethylthiazole kinase; SPTR: Hydroxyethylthiazole kinase; PFAM: Hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase
YP_003996515.1	InterPro IPR000601; KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_003996516.1	KEGG: fps:FP0281 M36 fungalysin family metalloprotease precursor; SPTR: Probable M36 fungalysin family metalloprotease
YP_003996517.1	KEGG: dfe:Dfer_4090 protein of unknown function DUF303 acetylesterase putative; SPTR: Putative uncharacterized protein
YP_003996518.1	InterPro IPR002059:IPR011129; KEGG: cpi:Cpin_5168 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding protein family protein; PFAM: 'Cold-shock' DNA-binding domain
YP_003996519.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021:IPR001650:IPR014014:IPR000629:IPR 011545:IPR014001; KEGG: bvu:BVU_0398 ATP-dependent RNA helicase DeaD; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase DeaD; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003996520.1	InterPro IPR002921; KEGG: sli:Slin_0221 protein of unknown function DUF306 MetA and HslJ; PFAM: lipase class 3; SPTR: Putative uncharacterized protein; PFAM: Lipase (class 3)
YP_003996521.1	KEGG: dfe:Dfer_3340 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996522.1	KEGG: phe:Phep_3301 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996523.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_4134 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003996525.1	KEGG: rbi:RB2501_00261 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996526.1	InterPro IPR007372; KEGG: cpi:Cpin_0225 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003996527.1	KEGG: cpi:Cpin_0224 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996528.1	InterPro IPR003006; KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996529.1	COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: dfe:Dfer_2882 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: TatD-related deoxyribonuclease; PFAM: TatD related DNase
YP_003996530.1	InterPro IPR000537; KEGG: phe:Phep_0429 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; PFAM: UbiA prenyltransferase family
YP_003996531.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016303:IPR002658; KEGG: dfe:Dfer_2884 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase
YP_003996532.1	KEGG: dfe:Dfer_2885 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996533.1	COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003996534.1	InterPro IPR009959; KEGG: pgi:PG1451 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase
YP_003996535.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: pgi:PG1450 hypothetical protein; PFAM: helix-turN-helix HxlR type; SPTR: Transcriptional regulator family protein; PFAM: HxlR-like helix-turN-helix
YP_003996536.1	KEGG: ddr:Deide_3p00340 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996537.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dfe:Dfer_1562 transcriptional regulator, HxlR family; PFAM: helix-turN-helix HxlR type; SPTR: Transcriptional regulator, HxlR family; manually curated; PFAM: HxlR-like helix-turN-helix
YP_003996538.1	KEGG: pfh:PFHG_00650 conserved hypothetical protein; SPTR: Putative histone-lysine N-methyltransferase PFF1440w
YP_003996539.1	KEGG: eat:EAT1b_0629 DNA internalizatioN-related competence protein ComEC/Rec2; SPTR: DNA internalizatioN-related competence protein ComEC/Rec2
YP_003996540.1	InterPro IPR001387; KEGG: pdi:BDI_2133 hypothetical protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003996541.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR005467:IPR003594:IPR004358; KEGG: wsu:WS1927 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003996542.1	KEGG: wsu:WS1929 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996543.1	InterPro IPR002052:IPR003356:IPR002296; KEGG: wsu:WS1930 hypothetical protein; PFAM: N-6 DNA methylase; SPTR: N-6 DNA methylase family protein; PFAM: Eco57I restriction endonuclease
YP_003996544.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_2568 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_003996545.1	KEGG: avn:Avin_00100 glycyl-tRNA synthetase subunit beta; SPTR: Phage integrase family protein
YP_003996546.1	KEGG: kfl:Kfla_6978 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996547.1	KEGG: bpu:BPUM_1127 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996548.1	InterPro IPR002514; KEGG: cpy:Cphy_3216 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003996549.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003996550.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: fjo:Fjoh_0157 deaminase-reductase domaiN-containing protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: Deaminase-reductase domain protein; PFAM: RibD C-terminal domain
YP_003996551.1	COGs: COG4430 conserved hypothetical protein; InterPro IPR014922; KEGG: gtn:GTNG_1580 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_003996552.1	InterPro IPR016944; KEGG: phe:Phep_2123 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996553.1	COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: phe:Phep_2122 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_003996554.1	InterPro IPR001845; KEGG: cpi:Cpin_4829 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_003996555.1	COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR013216; KEGG: str:Sterm_0996 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; PFAM: Methyltransferase domain
YP_003996556.1	KEGG: pru:PRU_2457 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Abi-like protein
YP_003996557.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003996558.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: lin:lin1811 hypothetical protein; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003996559.1	KEGG: bpu:BPUM_1127 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996560.1	InterPro IPR002052:IPR002296; KEGG: mar:MAE_63060 type IIS restriction/modification enzyme; SPTR: Putative type IIS restriction/modification enzyme; PFAM: Eco57I restriction endonuclease
YP_003996562.1	KEGG: fjo:Fjoh_0904 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Transposase IS200 like
YP_003996563.1	InterPro IPR000157; KEGG: set:SEN1975 hypothetical protein; PFAM: TIR protein; SMART: TIR protein; SPTR: Putative uncharacterized protein; PFAM: TIR domain
YP_003996564.1	COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR020827:IPR006034:IPR006033; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I
YP_003996565.1	KEGG: dfe:Dfer_1239 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996566.1	COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR012255:IPR014730; KEGG: dfe:Dfer_1240 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein domain
YP_003996567.1	COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR001308:IPR014730:IPR014731; KEGG: dfe:Dfer_1241 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain
YP_003996568.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665:IPR011659:IPR006664; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_003996569.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4680 ribonuclease III; PFAM: glycosyl transferase family 2; SPTR: Ribonuclease III; PFAM: Glycosyl transferase family 2
YP_003996570.1	COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 membrane proteiN-like protein; PFAM: glycosyl transferase family 39; SPTR: Membrane proteiN-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003996571.1	InterPro IPR001173; KEGG: dfe:Dfer_3529 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003996572.1	KEGG: sli:Slin_2675 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996573.1	COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR003016:IPR017453; KEGG: cat:CA2559_01205 glycine cleavage system protein H; PFAM: glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_003996574.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR004722; KEGG: dfe:Dfer_4467 dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; SPTR: Dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type
YP_003996575.1	KEGG: sli:Slin_6625 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996576.1	KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996577.1	InterPro IPR018073:IPR019860; KEGG: dfe:Dfer_4470 ABC transporter permease; gliding motility-associated protein; SPTR: ABC transporter permease; gliding motility-associated protein; TIGRFAM: gliding motility-associated ABC transporter permease protein GldF; TIGRFAM: gliding motility-associated ABC transporter permease protein GldF
YP_003996578.1	COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: ckr:CKR_0845 hypothetical protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family
YP_003996579.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: sli:Slin_1175 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003996580.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: cpi:Cpin_1530 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_003996581.1	COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: gbr:Gbro_2421 LAO/AO transport system ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_003996582.1	COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); InterPro IPR001272:IPR015994; KEGG: cpi:Cpin_6930 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (ATP); PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_003996583.1	KEGG: dfe:Dfer_4410 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Neutral/alkaline noN-lysosomal ceramidase
YP_003996584.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: scl:sce1514 hypothetical protein; PFAM: NADPH-dependent FMN reductase; SPTR: Putative uncharacterized protein; PFAM: NADPH-dependent FMN reductase
YP_003996585.1	KEGG: zpr:ZPR_2896 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF3472)
YP_003996586.1	COGs: COG2738 ZN-dependent protease; InterPro IPR007395; KEGG: chu:CHU_3831 hypothetical protein; PFAM: peptidase membrane zinc metallopeptidase; SPTR: Putative uncharacterized protein; PFAM: Putative neutral zinc metallopeptidase
YP_003996587.1	InterPro IPR000620; KEGG: cpi:Cpin_1584 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family
YP_003996588.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR012278:IPR001130; KEGG: sli:Slin_2234 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_003996589.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1003 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003996590.1	COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: gct:GC56T3_0584 phosphinothricin acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: Phosphinothricin acetyltransferase; SPTR: Phosphinothricin acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996591.1	KEGG: dfe:Dfer_4376 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996592.1	COGs: COG2855 membrane protein; InterPro IPR018383; KEGG: phe:Phep_2085 hypothetical protein; PFAM: Uncharacterised protein family UPF0324; SPTR: PSE family sulfate exporter; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein
YP_003996593.1	KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996594.1	COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: dfe:Dfer_4876 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_003996595.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_4877 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003996596.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4878 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase family M1
YP_003996597.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein, putative; PFAM: Radical SAM superfamily
YP_003996598.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR002121:IPR014021:IPR001650:IPR011545:IPR 018982:IPR014001:IPR006293:IPR018329; KEGG: dfe:Dfer_3602 ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; RQC domain; HRDC domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family
YP_003996599.1	COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644:IPR001347:IPR004800; KEGG: dfe:Dfer_3603 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SMART: CBS domain containing protein; SPTR: KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_003996600.1	COGs: COG0029 Aspartate oxidase; InterPro IPR003953:IPR004112:IPR005288:IPR013027; KEGG: phe:Phep_0012 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase
YP_003996601.1	KEGG: sli:Slin_6388 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PspC domain
YP_003996602.1	COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR001135; KEGG: dfe:Dfer_3733 NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YP_003996603.1	KEGG: chu:CHU_3066 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996604.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: phe:Phep_2363 serine O-acetyltransferase; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase
YP_003996605.1	InterPro IPR013217; KEGG: dfe:Dfer_3413 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 12; manually curated; PFAM: Methyltransferase domain
YP_003996606.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR001412:IPR020058:IPR004527:IPR020060; KEGG: sli:Slin_4891 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_003996607.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1818 dipeptidyl peptidase IV; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase S9, prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003996608.1	InterPro IPR001387; KEGG: fjo:Fjoh_4999 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003996609.1	KEGG: bth:BT_4753 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996610.1	KEGG: afu:AF1804 hypothetical protein; SPTR: S-adenosylmethionine decarboxylase proenzyme
YP_003996611.1	InterPro IPR007627:IPR007630:IPR014284; KEGG: zpr:ZPR_4420 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003996612.1	KEGG: zpr:ZPR_4419 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: transposase, IS605 OrfB family, central region
YP_003996613.1	InterPro IPR012910:IPR000531; KEGG: bfs:BF0596 surface membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996614.1	InterPro IPR012944; KEGG: bfr:BF0671 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996615.1	InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL)
YP_003996616.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2738 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1
YP_003996617.1	KEGG: geo:Geob_2303 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003996618.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2737 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Possible group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1
YP_003996619.1	KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: Outer membrane protein
YP_003996620.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_003996621.1	InterPro IPR000182; KEGG: dfe:Dfer_2556 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996622.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917:IPR004839; KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_003996623.1	KEGG: phe:Phep_4095 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996624.1	InterPro IPR003838; KEGG: dfe:Dfer_5420 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative ABC transporter permease; PFAM: Predicted permease
YP_003996625.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: zpr:ZPR_4631 ABC-type transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative ABC transporter ATP-binding protein; PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group
YP_003996626.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: rbi:RB2501_00516 efflux transporter, MFP component, RND family protein; SPTR: Efflux transporter, MFP component, RND family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003996627.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR001789:IPR002197:IPR003593:IPR 020441; KEGG: zpr:ZPR_4629 sigma-54 dependent DNA-binding response regulator, fis family protein; PFAM: sigma-54 factor interaction domaiN-containing protein; response regulator receiver; helix-turN-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Sigma-54 dependent DNA-binding response regulator, Fis family protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003996628.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR005467:IPR003594:IPR004358; KEGG: zpr:ZPR_4628 sensory box sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Sensory box sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003996629.1	KEGG: dfe:Dfer_3212 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996630.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR000700:IPR 008207:IPR003018:IPR013767:IPR013655:IPR013656:IPR003661:I PR003594:IPR001610:IPR004358; KEGG: fba:FIC_01779 PAS/PAC domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: Possible sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003996631.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: fba:FIC_01778 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain
YP_003996632.1	KEGG: fba:FIC_01777 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996633.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173:IPR000917; KEGG: fba:FIC_01776 glycosyl transferase, family 2; PFAM: sulfatase; glycosyl transferase family 2; SPTR: Glycosyl transferase family protein; PFAM: Sulfatase; Glycosyl transferase family 2; Chitin synthase
YP_003996634.1	InterPro IPR019734:IPR013026:IPR001440; KEGG: fba:FIC_01774 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein
YP_003996635.1	COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR013549:IPR010099; KEGG: bal:BACI_c05080 epimerase; PFAM: domain of unknown function DUF1731; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777
YP_003996636.1	KEGG: sli:Slin_3048 rifampin ADP-ribosyl transferase; SPTR: Rifampin ADP-ribosyl transferase; PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase
YP_003996637.1	COGs: COG0443 Molecular chaperone; KEGG: chu:CHU_2145 heat shock protein; SPTR: Probable heat shock protein; PFAM: Hsp70 protein
YP_003996638.1	KEGG: phe:Phep_3164 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996639.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_2259 cyclic nucleotide binding regulatory protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003996640.1	KEGG: fjo:Fjoh_3132 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996641.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_0371 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003996642.1	KEGG: pgn:PGN_1476 hypothetical protein; SPTR: Thermostable beta-glucosidase B (Gentiobiase)(Cellobiase) (Beta-D-glucoside glucohydrolase)
YP_003996643.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dau:Daud_0865 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Mannosyltransferase; PFAM: Glycosyl transferases group 1
YP_003996644.1	COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: rba:RB2988 hypothetical protein; PFAM: glycosidase related protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF377)
YP_003996645.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dau:Daud_0862 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_003996646.1	KEGG: sfr:Sfri_2538 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996647.1	KEGG: amc:MADE_03683 enzymatic protein; SPTR: Putative enzymatic protein
YP_003996648.1	InterPro IPR000595; KEGG: cpi:Cpin_4692 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_003996649.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_3159 response regulator receiver; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003996651.1	KEGG: lci:LCK_01285 alternansucrase; SPTR: Alternansucrase
YP_003996652.1	InterPro IPR001818; KEGG: mcc:703867 matrix metallopeptidase 12 (macrophage elastase); PFAM: peptidase M10A and M12B matrixin and adamalysin; SPTR: LOC100127631 protein
YP_003996653.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: nwi:Nwi_3112 helix-turN-helix, fis-type; PFAM: Integrase catalytic region; SPTR: Helix-turN-helix, Fis-type protein; PFAM: Integrase core domain
YP_003996654.1	InterPro IPR002514; KEGG: mch:Mchl_5506 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911; PFAM: Transposase
YP_003996655.1	COGs: COG1404 SubtilisiN-like serine protease; InterPro IPR000209; KEGG: pdi:BDI_3426 calcium dependent protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Putative calcium dependent protease; PFAM: Subtilase family
YP_003996656.1	KEGG: ppa:PAS_chr3_0966 Vacuolar membrane zinc transporter; SPTR: Putative uncharacterized protein
YP_003996657.1	InterPro IPR002514; KEGG: dap:Dacet_1482 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase ORF-A, IS-type; PFAM: Transposase
YP_003996658.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003996659.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003996660.1	KEGG: xau:Xaut_5086 type IV secretion/conjugal transfer ATPase; SPTR: Site-specific recombinase
YP_003996661.1	KEGG: zpr:ZPR_3089 hypothetical protein; SPTR: Regulatory protein RteC family protein
YP_003996662.1	COGs: COG2132 Putative multicopper oxidase; InterPro IPR002355:IPR011707:IPR001117:IPR011706; KEGG: fjo:Fjoh_0192 multicopper oxidase, type 3; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; SPTR: Copper resistance protein; PFAM: Multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family
YP_003996663.1	KEGG: rbi:RB2501_04695 hypothetical protein; SPTR: Cytochrome c
YP_003996664.1	KEGG: pmx:PERMA_0554 MlpB; SPTR: MlpB family protein
YP_003996665.1	KEGG: fjo:Fjoh_3066 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3347)
YP_003996666.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757:IPR000695; KEGG: zpr:ZPR_3414 copper-transporting ATPase, P-type (CopB); PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-exporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003996667.1	KEGG: zpr:ZPR_3413 phosphoribosylpyrophosphate synthetase; SPTR: Putative uncharacterized protein
YP_003996668.1	KEGG: fjo:Fjoh_3064 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Heavy-metal-associated domain; Protein of unknown function (DUF3347)
YP_003996669.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121:IPR002524; KEGG: prw:PsycPRwf_0699 cation efflux protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; PFAM: Cation efflux family
YP_003996670.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910; KEGG: bvu:BVU_4189 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003996671.1	KEGG: bvu:BVU_4190 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003996672.1	KEGG: cgt:cgR_0748 hypothetical protein
YP_003996673.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006118:IPR006119:IPR011109; KEGG: zpr:ZPR_3496 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain
YP_003996674.1	SPTR: Putative uncharacterized protein
YP_003996675.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: fjo:Fjoh_3463 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Candidate beta-glycosyltransferase; Glycosyltransferase family 2; PFAM: Glycosyl transferase family 2
YP_003996676.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814:IPR004639; KEGG: sli:Slin_2012 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; SPTR: Glutamate-1-semialdehyde-2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_003996677.1	KEGG: sli:Slin_2013 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996678.1	COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR019998:IPR020001; KEGG: dfe:Dfer_1150 inner membrane protein translocase component YidC; PFAM: 60 kDa inner membrane insertion protein; SPTR: 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_003996679.1	COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003996680.1	InterPro IPR000504; KEGG: cli:Clim_2119 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_003996681.1	InterPro IPR000504; KEGG: pfh:PFHG_04109 conserved hypothetical protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: Nucleolar protein 4; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_003996682.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: vha:VIBHAR_01509 hypothetical protein; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: RNA methyltransferase TrmH family; PFAM: SpoU rRNA Methylase family
YP_003996683.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_2726 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen
YP_003996684.1	KEGG: fba:FIC_01904 bleomycin resistance protein; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_003996685.1	KEGG: gym:GYMC10_3233 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996686.1	COGs: COG4122 O-methyltransferase; KEGG: cpi:Cpin_6507 O-methyltransferase-like protein; SPTR: O-methyltransferase-like protein; PFAM: O-methyltransferase
YP_003996687.1	COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG domain protein; SPTR: ApaG domain protein; PFAM: Protein of unknown function (DUF525)
YP_003996688.1	COGs: COG0692 Uracil DNA glycosylase; InterPro IPR002043:IPR018085:IPR005122; KEGG: bvu:BVU_4148 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase
YP_003996689.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114:IPR002052:IPR000241; KEGG: fjo:Fjoh_2495 RNA methylase; PFAM: RNA methylase; THUMP domaiN-containing protein; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Putative RNA methylase; PFAM: Putative RNA methylase family UPF0020; THUMP domain
YP_003996690.1	InterPro IPR019887; KEGG: mmw:Mmwyl1_0222 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SPTR: Putative transcriptional regulator, AsnC family; PFAM: AsnC family
YP_003996691.1	COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: cpi:Cpin_6024 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200)
YP_003996692.1	KEGG: pic:PICST_4679 SVP1-like protein 2
YP_003996693.1	KEGG: mxa:MXAN_6132 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996694.1	KEGG: chu:CHU_2401 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996695.1	KEGG: cbr:CBG04125 Hypothetical protein CBG04125; SPTR: GBSi1, group II intron, maturase
YP_003996696.1	COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_003996698.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017963:IPR001126; KEGG: fba:FIC_01143 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family
YP_003996699.1	InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003996700.1	InterPro IPR011701:IPR001958; KEGG: phe:Phep_1458 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated; PFAM: Major Facilitator Superfamily
YP_003996701.1	KEGG: msv:Mesil_1457 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996702.1	COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR017045:IPR005196:IPR005195; KEGG: dfe:Dfer_2756 maltose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; SPTR: Kojibiose phosphorylase; PFAM: Glycosyl hydrolase family 65, N-terminal domain; Glycosyl hydrolase family 65 central catalytic domain
YP_003996703.1	COGs: COG4677 Pectin methylesterase; InterPro IPR018040:IPR000070; KEGG: sli:Slin_4787 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase
YP_003996704.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_1500 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43
YP_003996705.1	COGs: COG0637 phosphatase/phosphohexomutase; InterProIPR005834:IPR010972:IPR010976:IPR006402:IPR 005833; KEGG: dfe:Dfer_2757 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Beta-phosphoglucomutase; TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase
YP_003996706.1	COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589; KEGG: dfe:Dfer_2758 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain
YP_003996707.1	KEGG: dfe:Dfer_1387 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996708.1	COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR001412:IPR015413:IPR013155:IPR002302; KEGG: dfe:Dfer_2634 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodoN-binding; tRNA synthetase class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); AnticodoN-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_003996709.1	InterPro IPR017936:IPR013740; KEGG: sli:Slin_1863 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Redoxin
YP_003996710.1	KEGG: sli:Slin_4820 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996711.1	InterPro IPR011637; KEGG: cat:CA2559_01610 hypothetical protein; PFAM: DoxX family protein; SPTR: Putative uncharacterized protein; PFAM: DoxX
YP_003996712.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR001555:IPR002376:IPR004607; KEGG: dfe:Dfer_2482 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: Formyl transferase domain protein; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_003996713.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2480 prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: UbiA prenyltransferase; PFAM: UbiA prenyltransferase family
YP_003996714.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0012 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_003996715.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR001140:IPR 003593; KEGG: sli:Slin_6331 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003996716.1	COGs: COG1295 membrane protein; InterPro IPR004664:IPR017039; KEGG: dfe:Dfer_5015 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Ribonuclease BN; TIGRFAM: ribonuclease BN; manually curated; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_003996717.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: dfe:Dfer_5014 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_003996718.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: dfe:Dfer_5013 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_003996719.1	COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR006195:IPR015807:IPR004516:IPR002314:IPR 004154; KEGG: dfe:Dfer_1143 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); AnticodoN-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_003996720.1	KEGG: sli:Slin_2009 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996721.1	KEGG: sli:Slin_2010 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996722.1	COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: glo:Glov_2977 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003996723.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224:IPR006145; KEGG: cpi:Cpin_4402 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_003996724.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR017909:IPR000683:IPR006311; KEGG: dfe:Dfer_0297 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twiN-arginine translocation) pathway signal sequence
YP_003996725.1	KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: Gliding motility-related protein
YP_003996726.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterPro IPR000085:IPR013849:IPR011114; KEGG: dfe:Dfer_4464 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_003996727.1	InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Thioredoxin family protein; PFAM: Thioredoxin; Rhodanese-like domain
YP_003996728.1	COGs: COG0148 Enolase; InterPro IPR000941:IPR020809:IPR020811:IPR020810; KEGG: dfe:Dfer_4373 enolase; PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_003996729.1	InterPro IPR007060; KEGG: sli:Slin_5031 hypothetical protein; PFAM: Septum formation initiator; SPTR: Putative uncharacterized protein; PFAM: Septum formation initiator
YP_003996730.1	COGs: COG0394 ProteiN-tyrosine-phosphatase; InterPro IPR017867:IPR000106; KEGG: sli:Slin_5030 protein tyrosine phosphatase; PFAM: ProteiN-tyrosine phosphatase, low molecular weight; SMART: ProteiN-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_003996731.1	KEGG: dfe:Dfer_2817 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996732.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: dfe:Dfer_3933 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_003996733.1	COGs: COG4757 alpha/beta hydrolase; InterPro IPR017208; KEGG: hoh:Hoch_0438 hypothetical protein; SPTR: Alpha/beta hydrolase
YP_003996734.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003439:IPR017940:IPR001140:IPR003593; KEGG: dfe:Dfer_4763 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003996735.1	InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; PFAM: Zinc carboxypeptidase
YP_003996736.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: ote:Oter_0821 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003996737.1	COGs: COG0681 Signal peptidase I; InterPro IPR019758:IPR019759:IPR000223; KEGG: sli:Slin_0245 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_003996738.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3414 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003996739.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3415 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003996740.1	InterPro IPR008894; KEGG: dfe:Dfer_3416 WxcM domain protein; PFAM: WxcM-like domaiN-containing protein; SPTR: WxcM domain protein; PFAM: WxcM-like, C-terminal
YP_003996741.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: sli:Slin_5527 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Orn/DAP/Arg decarboxylase 2; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_003996742.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221; KEGG: dfe:Dfer_4117 Mur ligase middle domain protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Mur ligase middle domain protein; PFAM: Mur ligase family, catalytic domain; Mur ligase middle domain
YP_003996743.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: sli:Slin_2822 glycosyl transferase family 9; PFAM: glycosyl transferase family 9; SPTR: Putative uncharacterized protein; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_003996744.1	KEGG: sli:Slin_2821 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996745.1	COGs: COG0083 Homoserine kinase; InterPro IPR000870:IPR006204:IPR013750; KEGG: sli:Slin_6218 homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: Homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase
YP_003996746.1	COGs: COG0527 Aspartokinase; InterProIPR018042:IPR019811:IPR011147:IPR001048:IPR 002912:IPR005106:IPR001342:IPR001341; KEGG: sli:Slin_4514 aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; PRIAM: Aspartate kinase., Homoserine dehydrogenase; SPTR: Aspartate kinase; TIGRFAM: aspartate kinase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_003996747.1	InterPro IPR001845; KEGG: rbi:RB2501_08195 transcription regulator, ArsR family protein (imported); PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family
YP_003996748.1	COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: dfe:Dfer_5113 aminotransferase class V; PFAM: aminotransferase class V; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_003996749.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sli:Slin_2433 multiple antibiotic resistance (MarC)-related protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: Multiple antibiotic resistance (MarC)-related protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_003996750.1	InterPro IPR012506; KEGG: ctt:CtCNB1_4281 YhhN-like protein; PFAM: YhhN family protein; SPTR: Putative uncharacterized protein; PFAM: YhhN-like protein
YP_003996751.1	COGs: COG4502 conserved hypothetical protein; KEGG: rbi:RB2501_10642 5'(3')-deoxyribonucleotidase; SPTR: 5'(3')-deoxyribonucleotidase; PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
YP_003996752.1	KEGG: chu:CHU_2148 polysaccharide lyase polysaccharide lyase family 14 protein; SPTR: Candidate polysaccharide lyase, polysaccharide lyase family 14 protein
YP_003996753.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: dfe:Dfer_2424 maf protein; PFAM: Maf family protein; SPTR: Maf protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_003996754.1	InterPro IPR000835; KEGG: chu:CHU_0954 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator; PFAM: MarR family
YP_003996755.1	KEGG: sli:Slin_0763 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Secretory lipase
YP_003996756.1	KEGG: dfe:Dfer_0226 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996757.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR002082:IPR006130:IPR006132:IPR006131; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/OrN-binding region; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_003996758.1	COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268:IPR020396; KEGG: sli:Slin_6042 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH-quinone oxidoreductase; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_003996759.1	COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: chu:CHU_2672 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; TIGRFAM: phosphoesterase, MJ0936 family
YP_003996760.1	KEGG: dfe:Dfer_2677 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996761.1	COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: cbh:CLC_1220 ZIP family zinc transporter; PFAM: zinc/iron permease; SPTR: Zinc transporter, ZIP family; PFAM: ZIP Zinc transporter
YP_003996762.1	InterPro IPR010496; KEGG: dfe:Dfer_5676 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003996763.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gfo:GFO_2279 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Galactosyltransferase; Glycosyl transferase family 2
YP_003996764.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: fba:FIC_00839 mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Mannosyltransferase; PFAM: Glycosyl transferases group 1
YP_003996765.1	InterPro IPR000834; KEGG: psl:Psta_3804 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003996766.1	InterPro IPR000834; KEGG: psl:Psta_3805 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003996767.1	KEGG: cpi:Cpin_5477 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_003996768.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR017730:IPR018368:IPR001270:IPR003593:IPR 004176:IPR003959:IPR013093:IPR019489; KEGG: dfe:Dfer_2969 ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_003996769.1	KEGG: dfe:Dfer_2763 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: DinB family
YP_003996770.1	KEGG: sli:Slin_2223 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: DinB family
YP_003996771.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003996772.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR018320:IPR019760:IPR002298:IPR002421:IPR 008918:IPR002562:IPR001098:IPR020046:IPR020047; KEGG: dfe:Dfer_1096 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpiN-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I
YP_003996773.1	COGs: COG1001 Adenine deaminase; InterPro IPR006679:IPR006680; KEGG: dfe:Dfer_5735 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase
YP_003996774.1	COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding proteiN-like protein; SPTR: DNA uptake protein and related DNA-binding proteiN-like protein
YP_003996775.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_0527 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel
YP_003996776.1	COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dfe:Dfer_4264 protein of unknown function DUF124; PFAM: protein of unknown function DUF124; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266
YP_003996777.1	KEGG: dfe:Dfer_4263 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996778.1	KEGG: phe:Phep_1306 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996779.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR017909:IPR000683; KEGG: dfe:Dfer_4556 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twiN-arginine translocation) pathway signal sequence
YP_003996780.1	COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146:IPR020548; KEGG: zpr:ZPR_0468 fructose-1,6-bisphosphatase; PFAM: Inositol phosphatase/fructose-16-bisphosphatase; SPTR: Fructose-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase
YP_003996781.1	COGs: COG2859 conserved hypothetical protein; InterPro IPR016907:IPR007497; KEGG: fba:FIC_02304 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Periplasmic protein; PFAM: Protein of unknown function (DUF541)
YP_003996782.1	COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019; KEGG: dfe:Dfer_3910 methyladenine glycosylase; PFAM: methyladenine glycosylase; SPTR: Methyladenine glycosylase; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I
YP_003996783.1	InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003996784.1	COGs: COG3530 conserved hypothetical protein; KEGG: cpi:Cpin_4969 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996785.1	COGs: COG3781 membrane protein; KEGG: cpi:Cpin_2003 protein of unknown function UPF0187; SPTR: Putative uncharacterized protein; PFAM: Bestrophin
YP_003996786.1	COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR001020:IPR006175; KEGG: rbi:RB2501_05340 transcription regulator; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_003996787.1	KEGG: ppd:Ppro_0505 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996788.1	COGs: COG0281 Malic enzyme; InterPro IPR012188:IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase
YP_003996789.1	InterPro IPR002640; KEGG: pla:Plav_2097 arylesterase; PFAM: Arylesterase; SPTR: Serum paraoxonase/arylesterase 2; PFAM: Arylesterase
YP_003996790.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_3435 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twiN-arginine translocation) pathway signal sequence
YP_003996791.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021:IPR001650:IPR014014:IPR000629:IPR 014001:IPR011545:IPR005580; KEGG: dfe:Dfer_0202 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_003996792.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dfe:Dfer_3215 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_003996793.1	KEGG: lsp:Bsph_2088 cell surface glycoprotein 2 precursor (S-layer protein 2); SPTR: Cell surface glycoprotein 2 (S-layer protein 2)
YP_003996794.1	InterPro IPR003961; KEGG: fjo:Fjoh_0912 fibronectin, type III domaiN-containing protein; SPTR: Fibronectin, type III domain protein
YP_003996795.1	InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain
YP_003996796.1	KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides forsythus 147-residue repeat
YP_003996797.1	KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996798.1	InterPro IPR003961; KEGG: fjo:Fjoh_0912 fibronectin, type III domaiN-containing protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin, type III domain protein
YP_003996799.1	KEGG: fjo:Fjoh_0912 fibronectin, type III domaiN-containing protein; SPTR: Fibronectin, type III domain protein
YP_003996800.1	InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain
YP_003996801.1	KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996802.1	KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996803.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR005467:IPR011110:IPR011712:IPR003594; KEGG: sli:Slin_5256 histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; Two component regulator propeller; ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller
YP_003996804.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789; KEGG: fjo:Fjoh_1987 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003996805.1	COGs: COG0302 GTP cyclohydrolase I; InterPro IPR001474:IPR018234:IPR020602; KEGG: chu:CHU_0955 GTP cyclohydrolase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_003996806.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_003996807.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR012763:IPR001270:IPR003593:IPR003959; KEGG: dfe:Dfer_4930 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau
YP_003996808.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: phe:Phep_2231 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003996809.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_1452 cyclic nucleotide binding regulatory protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003996811.1	COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: chu:CHU_3631 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_003996812.1	KEGG: sli:Slin_1308 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996813.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_003996814.1	KEGG: sli:Slin_1306 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_003996815.1	InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003996816.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR013027:IPR006076; KEGG: sli:Slin_1023 FAD dependent oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; SPTR: Putative uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003996817.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017896:IPR017900; KEGG: dfe:Dfer_4037 4Fe-4S ferredoxin iroN-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iroN-sulfur binding domain protein
YP_003996818.1	COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR002355:IPR001457; KEGG: sli:Slin_4912 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_003996819.1	COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: dfe:Dfer_4039 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_003996820.1	COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: zpr:ZPR_4424 excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Excinuclease ABC C subunit domain protein; PFAM: GIY-YIG catalytic domain
YP_003996821.1	COGs: COG3865 conserved hypothetical protein; InterPro IPR009725; KEGG: art:Arth_2204 3-demethylubiquinone-9 3-methyltransferase; SPTR: 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase
YP_003996822.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: zpr:ZPR_3711 predicted cAMP-binding domain, regulatory protein, diverged; PFAM: cyclic nucleotide-binding; SPTR: Possible cAMP-binding domain regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003996823.1	COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: pfl:PFL_0765 quinone family NAD(P)H dehydrogenase; PFAM: NAD(P)H dehydrogenase (quinone); SPTR: Quinone family NAD(P)H dehydrogenase; PFAM: FlavodoxiN-like fold
YP_003996824.1	KEGG: abu:Abu_1247 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996825.1	COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; InterPro IPR004625:IPR013749; KEGG: ent:Ent638_2946 pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: Pyridoxal kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase
YP_003996826.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: coc:Coch_0906 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: Alanine racemase domain protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003996827.1	COGs: COG1289 membrane protein; KEGG: cts:Ctha_2029 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996828.1	InterPro IPR000182; KEGG: cps:CPS_1640 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family
YP_003996829.1	KEGG: ngr:NAEGRDRAFT_45977 hypothetical protein; SPTR: Predicted protein
YP_003996830.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_2089 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41
YP_003996831.1	COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: chu:CHU_2283 hypothetical protein; PFAM: transcription activator effector binding; SPTR: Putative uncharacterized protein; PFAM: Bacterial transcription activator, effector binding domain
YP_003996833.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: sli:Slin_0548 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC-like protein; PFAM: OsmC-like protein
YP_003996834.1	InterPro IPR000182; KEGG: vvu:VV1_2448 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Probable acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996835.1	COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: sli:Slin_2340 RES domain protein; PFAM: RES domain protein; SPTR: RES domain protein; PFAM: RES domain
YP_003996836.1	KEGG: sli:Slin_2341 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: toxiN-antitoxin system antitoxin component, TIGR02293 family
YP_003996837.1	COGs: COG1201 Lhr-like helicase; InterProIPR017170:IPR014021:IPR001650:IPR014001:IPR 011545:IPR013701; KEGG: fba:FIC_01804 helicase domain protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Probable ATP-dependent helicase; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase
YP_003996838.1	COGs: COG1407 ICC-like phosphoesterase; InterPro IPR003006:IPR004843; KEGG: fba:FIC_01803 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: CalcineuriN-like phosphoesterase; TIGRFAM: phosphoesterase, SbcD/Mre11-related
YP_003996839.1	COGs: COG0388 amidohydrolase; InterPro IPR003010:IPR000182:IPR001110; KEGG: paa:Paes_0511 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Acetyltransferase (GNAT) family; CarboN-nitrogen hydrolase
YP_003996840.1	InterPro IPR000182; KEGG: zpr:ZPR_1937 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996841.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: dap:Dacet_1807 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Putative uncharacterized protein; PFAM: Membrane transport protein
YP_003996842.1	KEGG: fba:FIC_01814 sensory transduction histidine kinase; SPTR: Sensory transduction histidine kinase
YP_003996843.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR004358:IPR 003661:IPR003594:IPR000005; KEGG: zpr:ZPR_2934 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: DNA-binding response regulator/sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996844.1	COGs: COG0443 Molecular chaperone; InterPro IPR012725:IPR018181:IPR001023:IPR013126; KEGG: dfe:Dfer_1226 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_003996845.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR005861:IPR001917:IPR004839; KEGG: dfe:Dfer_1138 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_003996846.1	COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260:IPR018375; KEGG: dfe:Dfer_2369 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase
YP_003996847.1	COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR010196:IPR018110:IPR013342; KEGG: cat:CA2559_11263 chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Chloromuconate cycloisomerase; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase
YP_003996848.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: dfe:Dfer_2371 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; manually curated; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_003996849.1	KEGG: sli:Slin_2018 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996850.1	KEGG: bsu:BSU34290 polysaccharide pyruvyl transferase; SPTR: Putative polysaccharide pyruvyl transferase
YP_003996851.1	KEGG: lbl:LBL_2867 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996852.1	COGs: COG2308 conserved hypothetical protein; InterPro IPR016450:IPR007297:IPR007302; KEGG: dfe:Dfer_4767 protein of unknown function DUF404; PFAM: protein of unknown function DUF404; protein of unknown function DUF407; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407)
YP_003996853.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bac:BamMC406_2352 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; manually curated; PFAM: Integrase core domain
YP_003996854.1	InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_003996855.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sli:Slin_4815 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_003996856.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR020892; KEGG: dfe:Dfer_3225 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003996857.1	COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: dps:DP0602 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; SPTR: Porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_003996858.1	KEGG: dfe:Dfer_4216 hypothetical protein; SPTR: Membrane protein, putative; PFAM: PAP2 superfamily
YP_003996859.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_003996860.1	COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: sli:Slin_0770 chorismate binding-like protein; PFAM: Chorismate binding-like; SPTR: Chorismate binding-like protein; PFAM: chorismate binding enzyme
YP_003996861.1	KEGG: sli:Slin_1445 hypothetical protein; SPTR: Putative Cytochrome c-type biogenesis protein CcmE
YP_003996862.1	KEGG: phe:Phep_3220 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996863.1	InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein
YP_003996864.1	COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: dfe:Dfer_5084 cytochrome c-type biogenesis protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB; PFAM: CcmB protein
YP_003996865.1	InterPro IPR005151; KEGG: sli:Slin_5254 peptidase S41; PFAM: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41
YP_003996866.1	COGs: COG0781 Transcription termination factor; InterPro IPR011605:IPR006027; KEGG: dfe:Dfer_4924 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_003996867.1	KEGG: dfe:Dfer_4925 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996868.1	COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_003996869.1	InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721)
YP_003996870.1	COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; PFAM: LD-carboxypeptidase
YP_003996871.1	KEGG: sli:Slin_4967 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996872.1	COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002315:IPR006195:IPR002314:IPR004154; KEGG: dfe:Dfer_4906 glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); AnticodoN-binding domain protein; SPTR: Glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type
YP_003996873.1	KEGG: dfe:Dfer_0540 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996874.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR001566:IPR002792:IPR010280; KEGG: dfe:Dfer_1077 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; SPTR: Putative RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_003996875.1	InterPro IPR005151; KEGG: zpr:ZPR_0307 peptidase family S41; PFAM: peptidase S41; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S41
YP_003996876.1	COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255:IPR001969; KEGG: sli:Slin_0323 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_003996877.1	COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: fjo:Fjoh_2714 alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative
YP_003996878.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002701:IPR006218:IPR020822; KEGG: dfe:Dfer_4394 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; SPTR: DAHP synthetase I/KDSA; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: chorismate mutase related enzymes; phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003996879.1	InterPro IPR002872; KEGG: sli:Slin_5730 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase
YP_003996880.1	COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: dfe:Dfer_4392 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: Lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_003996881.1	KEGG: dfe:Dfer_0842 chromate transporter, chromate ion transporter (CHR) family; SPTR: Putative uncharacterized protein
YP_003996882.1	COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: pdi:BDI_1215 calcineurin superfamily phosphohydrolase; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: CalcineuriN-like phosphoesterase
YP_003996883.1	KEGG: bth:BT_0691 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996884.1	COGs: COG1018 Flavodoxin reductase (ferredoxiN-NADPH reductase) family 1; InterProIPR001041:IPR017927:IPR001834:IPR001709:IPR 008333:IPR001433; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: 2Fe-2S iroN-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: ferredoxin [2Fe-2S]
YP_003996885.1	KEGG: ppd:Ppro_2216 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996886.1	COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: pjd:Pjdr2_1753 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: Putative NADPH-quinone reductase; PFAM: FlavodoxiN-like fold
YP_003996887.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_2842 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003996888.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003996889.1	InterPro IPR004360; KEGG: cwo:Cwoe_0965 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003996890.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cpi:Cpin_4616 transcriptional regulator, HxlR family; PFAM: helix-turN-helix HxlR type; SPTR: Putative uncharacterized protein; PFAM: HxlR-like helix-turN-helix
YP_003996891.1	KEGG: cpi:Cpin_4614 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996892.1	COGs: COG1741 PiriN-related protein; InterPro IPR012093:IPR003829:IPR008778; KEGG: cpi:Cpin_4366 pirin domain protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin
YP_003996893.1	KEGG: aci:ACIAD3581 hypothetical protein; SPTR: GNAT family acetyltransferase
YP_003996894.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dsy:DSY3285 hypothetical protein; SPTR: AAA+ superfamily ATPase
YP_003996895.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_2428 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Possible HI0933-like protein; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996896.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198; KEGG: acd:AOLE_17445 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Possible 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: short chain dehydrogenase
YP_003996897.1	KEGG: cpi:Cpin_0126 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996898.1	KEGG: tpr:Tpau_0933 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996899.1	KEGG: nwa:Nwat_1638 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996900.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060; KEGG: fba:FIC_01204 transcriptional regulator, AraC family; SMART: Helix-turN-helix, AraC domain; SPTR: Putative transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996901.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: fba:FIC_01203 bifunctional deaminase-reductase domain protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: Bifunctional deaminase-reductase domain protein; PFAM: RibD C-terminal domain
YP_003996902.1	KEGG: eba:ebD46 transposase; SPTR: Putative uncharacterized protein
YP_003996903.1	InterPro IPR008878; KEGG: zpr:ZPR_3984 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; PFAM: IS66 Orf2 like protein
YP_003996904.1	InterPro IPR018134; KEGG: bfr:BF4122 hypothetical protein; SPTR: Putative MrsE protein
YP_003996905.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sss:SSUSC84_0854 lantibiotic transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Potential ABC transporter; manually curated; PFAM: ABC transporter
YP_003996906.1	COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: bfr:BF4124 hypothetical protein; PFAM: Erythromycin esterase; SPTR: Putative uncharacterized protein; PFAM: Erythromycin esterase
YP_003996907.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR000103:IPR013027; KEGG: zpr:ZPR_2200 alkyl hydroperoxide reductase, F52a subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Alkyl hydroperoxide reductase, F52a subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003996908.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: zpr:ZPR_3182 transcription regulator; SPTR: Probable transcription regulator; PFAM: Ferric uptake regulator family
YP_003996909.1	KEGG: fjo:Fjoh_2549 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996910.1	KEGG: fjo:Fjoh_2548 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996911.1	KEGG: cpi:Cpin_6115 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996912.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: cpi:Cpin_5119 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003996913.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: zpr:ZPR_0736 protein containing cyclic nucleotide-binding domain; PFAM: cyclic nucleotide-binding; SPTR: Protein containing cyclic nucleotide-binding domain; PFAM: Cyclic nucleotide-binding domain
YP_003996914.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: fjo:Fjoh_2547 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003996915.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR017871:IPR003593; KEGG: fjo:Fjoh_2144 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003996916.1	COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR017937:IPR000866; KEGG: phe:Phep_0264 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family
YP_003996917.1	KEGG: cpi:Cpin_7187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Thioredoxin family protein
YP_003996918.1	COGs: COG2128 conserved hypothetical protein; InterPro IPR004675:IPR003779; KEGG: fjo:Fjoh_3734 alkylhydroperoxidase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_003996919.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_3733 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_003996920.1	InterPro IPR002934; KEGG: pjd:Pjdr2_1923 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_003996921.1	KEGG: dfe:Dfer_5273 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996922.1	KEGG: bcv:Bcav_3950 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_003996923.1	KEGG: ddc:Dd586_1282 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2750)
YP_003996924.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: cbe:Cbei_3168 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family
YP_003996925.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR020471:IPR001395; KEGG: bxe:Bxe_B0797 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Putative aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003996926.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_003996927.1	KEGG: zpr:ZPR_3496 site-specific recombinase; SPTR: Site-specific recombinase; tmRNA as predicted by Rfam (RF00023), score 115.44; PFAM: Recombinase
YP_003996928.1	InterPro IPR002052; KEGG: sli:Slin_2097 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996929.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3653 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28
YP_003996930.1	InterPro IPR000182; KEGG: fjo:Fjoh_3310 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003996931.1	COGs: COG1741 PiriN-related protein; InterPro IPR012093:IPR003829; KEGG: chu:CHU_2096 piriN-related protein; PFAM: Pirin domain protein; SPTR: PiriN-related protein; PFAM: Pirin
YP_003996932.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003996933.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0589 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Putative two-component system sensor histidine kinase; PFAM: Histidine kinase
YP_003996934.1	KEGG: bvu:BVU_0843 beta-glycosidase; SPTR: Putative uncharacterized protein
YP_003996935.1	InterPro IPR012944; KEGG: bvu:BVU_0842 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003996936.1	InterPro IPR012910:IPR000531; KEGG: bvu:BVU_0841 hypothetical protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative TonB-linked outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003996937.1	KEGG: bvu:BVU_0840 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996938.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR018062:IPR 004358:IPR003661:IPR003594:IPR011110:IPR011123:IPR000005; KEGG: bth:BT_3049 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Two-component system sensor histidine kinase/response regulator, hybrid (One-component system); PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Two component regulator propeller; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003996939.1	COGs: COG3324 protein related to lactoylglutathione lyase; KEGG: vvu:VV1_2678 lactoylglutathione lyase-like protein; SPTR: Glyoxalase family protein
YP_003996940.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: dfe:Dfer_4817 peptidase M42 family protein; PFAM: peptidase M42 family protein; SPTR: Peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase
YP_003996941.1	KEGG: sti:Sthe_3182 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996942.1	COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: cts:Ctha_0501 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_003996943.1	COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR010230:IPR003439:IPR003593; KEGG: dfe:Dfer_5778 FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_003996944.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR011542:IPR000825; KEGG: sli:Slin_0174 FeS assembly protein SufD; PFAM: SufBD protein; SPTR: FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1
YP_003996945.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: dfe:Dfer_5780 cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily
YP_003996946.1	COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476:IPR001732:IPR014026:IPR014027; KEGG: cpi:Cpin_4763 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; SPTR: O-antigen biosynthesis protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_003996947.1	COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: dfe:Dfer_5783 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated domain
YP_003996948.1	COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: sli:Slin_0162 FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein
YP_003996949.1	InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: protein of unknown function DUF1094; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1094)
YP_003996950.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR004559:IPR018087:IPR006638:IPR007197:IPR 010723; KEGG: sli:Slin_2843 oxygeN-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: OxygeN-independent coproporphyrinogen III oxidase; TIGRFAM: oxygeN-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygeN-independent coproporphyrinogen III oxidase
YP_003996951.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sli:Slin_3138 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_003996953.1	KEGG: dre:565191 GTPase, IMAP family member 4-like; SPTR: Putative uncharacterized protein
YP_003996954.1	KEGG: cat:CA2559_03625 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996955.1	KEGG: bmy:Bm1_23310 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996956.1	manually curated
YP_003996957.1	KEGG: pkn:PKH_145380 hypothetical protein; SPTR: Predicted protein
YP_003996958.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fba:FIC_02403 multidrug resistance protein, AcrA/AcrE family; PFAM: secretion protein HlyD family protein; SPTR: Multidrug resistance protein, AcrA/AcrE family; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003996959.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR000731:IPR001036; KEGG: fba:FIC_02404 AcrB/AcrD/AcrF family membrane transport protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein D; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003996960.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: zpr:ZPR_0291 OprM-like outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: OprM-like outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003996961.1	COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004562:IPR004143:IPR019491; KEGG: fba:FIC_01956 lipoate-protein ligase A; PFAM: Lipoate protein ligase-like; biotin/lipoate A/B protein ligase; SPTR: Lipoate--protein ligase; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: Bacterial lipoate protein ligase C-terminus; Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoyltransferase and lipoate-protein ligase
YP_003996962.1	COGs: COG1410 Methionine synthase I cobalamiN-binding domain; InterProIPR011822:IPR003726:IPR000489:IPR004223:IPR 006158:IPR003759; KEGG: dfe:Dfer_2804 methionine synthase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; SPTR: Methionine synthase; TIGRFAM: methionine synthase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain
YP_003996963.1	COGs: COG1522 Transcriptional regulators; InterPro IPR000485:IPR019885:IPR019888:IPR019887; KEGG: dfe:Dfer_2805 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: Sugar-specific transcriptional regulator TrmB; AsnC family
YP_003996964.1	SPTR: Putative uncharacterized protein
YP_003996965.1	InterPro IPR000531; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003996966.1	InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; PFAM: Heavy-metal-associated domain
YP_003996967.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: zpr:ZPR_1960 outer membrane efflux family protein; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003996968.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR000731:IPR001036; KEGG: fjo:Fjoh_4408 hydrophobe/amphiphile efflux-1 (HAE1) family protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein D; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003996969.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0982 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: RND family efflux transporter, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003996970.1	KEGG: dre:777712 zgc:152816; SPTR: Novel protein
YP_003996971.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: dfe:Dfer_5001 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; PFAM: OsmC-like protein
YP_003996972.1	COGs: COG4891 conserved hypothetical protein; KEGG: afe:Lferr_2766 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_003996973.1	KEGG: phe:Phep_0720 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996974.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_003996975.1	COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR010016:IPR003833; KEGG: hin:HI1731 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370
YP_003996976.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003996977.1	KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996978.1	KEGG: dfe:Dfer_0029 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996979.1	COGs: COG3800 transcriptional regulator protein; InterPro IPR001387:IPR010359; KEGG: sli:Slin_2021 transcriptional regulator, XRE family; PFAM: helix-turN-helix domain protein; protein of unknown function DUF955; SMART: helix-turN-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turN-helix; Domain of unknown function (DUF955)
YP_003996980.1	COGs: COG0694 ThioredoxiN-like protein and domains; InterPro IPR001075:IPR017065:IPR014824; KEGG: dfe:Dfer_4882 nitrogeN-fixing NifU domain protein; PFAM: nitrogeN-fixing NifU domain protein; Scaffold protein Nfu/NifU; SPTR: NitrogeN-fixing NifU domain protein; PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain
YP_003996981.1	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: hmg:100206875 similar to 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_003996982.1	COGs: COG0261 Ribosomal protein L21; InterPro IPR001787:IPR018258; KEGG: dfe:Dfer_4884 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_003996983.1	InterPro IPR001611; KEGG: dfe:Dfer_5076 leucine-rich repeat-containing protein typical subtype; SPTR: Leucine-rich repeat-containing protein typical subtype
YP_003996984.1	COGs: COG0207 Thymidylate synthase; InterPro IPR000398:IPR020940; KEGG: dfe:Dfer_5002 thymidylate synthase; PFAM: thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_003996985.1	COGs: COG4692 neuraminidase (sialidase); KEGG: cpi:Cpin_7180 neuraminidase; SPTR: BNR repeat-containing glycosyl hydrolase
YP_003996986.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: dfe:Dfer_0445 sulfatase; PFAM: sulfatase; SPTR: Sulfatase; PFAM: Sulfatase
YP_003996987.1	COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: dfe:Dfer_0446 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region; SPTR: Glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal
YP_003996988.1	KEGG: sli:Slin_2427 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996989.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: rbi:RB2501_13214 16S ribosomal RNA methyltransferase RsmE; PFAM: protein of unknown function DUF558; SPTR: Putative uncharacterized protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_003996990.1	KEGG: sli:Slin_1353 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003996991.1	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307:IPR020592; KEGG: sli:Slin_1384 ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_003996992.1	COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR011961:IPR002676:IPR007903; KEGG: fps:FP0345 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; RimM protein; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_003996993.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR002649:IPR016009; KEGG: dfe:Dfer_2580 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_003996994.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743:IPR002205:IPR006691; KEGG: dfe:Dfer_1029 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit
YP_003996995.1	InterPro IPR019734:IPR013026:IPR001440; KEGG: dfe:Dfer_1030 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein
YP_003996996.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_2467 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family
YP_003996997.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1720 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_003996998.1	InterPro IPR011110; KEGG: cpi:Cpin_3143 two component regulator propeller domain protein; PFAM: Two component regulator propeller; SPTR: GGDEF domain protein; PFAM: Two component regulator propeller
YP_003996999.1	KEGG: hor:Hore_04850 heavy metal translocating P-type ATPase
YP_003997000.1	KEGG: tad:TRIADDRAFT_58332 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997001.1	KEGG: zpr:ZPR_1559 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997002.1	InterPro IPR001845; KEGG: fjo:Fjoh_2987 regulatory protein, ArsR; SMART: regulatory protein ArsR; SPTR: ArsR family regulatory protein; PFAM: Bacterial regulatory protein, arsR family
YP_003997003.1	KEGG: fjo:Fjoh_2988 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997004.1	COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: fjo:Fjoh_3080 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Possible phosphinothricin acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997005.1	InterPro IPR000182; KEGG: xcb:XC_1155 coenzyme A binding pocket; other site; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family protein; PFAM: Acetyltransferase (GNAT) family
YP_003997006.1	KEGG: gfo:GFO_2350 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997007.1	KEGG: fjo:Fjoh_4605 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997008.1	COGs: COG3781 membrane protein; KEGG: chu:CHU_0696 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bestrophin
YP_003997009.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR004705:IPR006153; KEGG: cpi:Cpin_3978 Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen antiporter; TIGRFAM: Na+/H+ antiporter; PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; TC 2.A.36
YP_003997010.1	COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: pmu:PM1197 VatB; PFAM: transferase hexapeptide repeat containing protein; SPTR: VatB; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003997011.1	KEGG: phe:Phep_2768 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997012.1	KEGG: cat:CA2559_07330 unknown membrane protein; SPTR: Putative uncharacterized protein
YP_003997014.1	InterPro IPR001387; KEGG: dfe:Dfer_1044 transcriptional regulator, XRE family; PFAM: helix-turN-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turN-helix
YP_003997015.1	KEGG: tan:TA16985 cysteine repeat modular protein 2
YP_003997016.1	COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR018357:IPR001451; KEGG: dfe:Dfer_1045 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; SPTR:2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN- succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_003997017.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR006424:IPR020831:IPR020830:IPR020832:IPR 020828:IPR020829; KEGG: dfe:Dfer_1046 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_003997018.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: dfe:Dfer_1047 tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; SPTR: tRNA (Guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_003997019.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645:IPR018109:IPR013221; KEGG: dfe:Dfer_1048 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: Folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_003997020.1	KEGG: sli:Slin_1995 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997021.1	InterPro IPR007730; KEGG: gfo:GFO_3253 hypothetical protein; PFAM: Sporulation domaiN-containing protein; SPTR: Putative uncharacterized protein; PFAM: Sporulation related domain
YP_003997022.1	KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997023.1	InterPro IPR019734:IPR013026:IPR001440:IPR011716; KEGG: sli:Slin_2038 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; Tetratricopeptide TPR_3 repeat-containing protein; SPTR: TPR repeat-containing protein
YP_003997024.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR001478:IPR007963; KEGG: sli:Slin_2037 peptidase M61 domain protein; PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase
YP_003997025.1	COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR017937:IPR019825:IPR000866; KEGG: fjo:Fjoh_3991 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol:disulfide interchange protein; PFAM: AhpC/TSA family
YP_003997026.1	COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770:IPR017441:IPR000846; KEGG: sli:Slin_0244 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_003997027.1	KEGG: bth:BT_4000 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997028.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: sli:Slin_0242 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_003997029.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fba:FIC_00750 ParA-like ATPase; SPTR: ParA-like ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003997030.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284:IPR000943:IPR009042:IPR007627:IPR 007624:IPR007630; KEGG: dfe:Dfer_1056 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; SPTR: RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003997031.1	COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR012162:IPR004088:IPR003029:IPR004087:IPR 001247:IPR015847:IPR015848:IPR018111; KEGG: sli:Slin_1986 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_003997032.1	COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR005290:IPR000589; KEGG: sli:Slin_1985 ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_003997033.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_1984 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003997034.1	KEGG: dfe:Dfer_1060 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997035.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR012318:IPR001808:IPR000595; KEGG: fba:FIC_01586 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; SPTR: Transcriptional regulator Crp family protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003997036.1	InterPro IPR002781; KEGG: fba:FIC_01585 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_003997037.1	InterPro IPR007069; KEGG: fba:FIC_01214 transposase; PFAM: transposase; SPTR: Transposase; PFAM: Putative transposase
YP_003997038.1	COGs: COG1741 PiriN-related protein; KEGG: ebi:EbC_pEb10200330 pirin family protein; SPTR: Pirin domain protein; PFAM: Pirin
YP_003997039.1	KEGG: aha:AHA_3464 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997040.1	InterPro IPR000595; KEGG: fjo:Fjoh_3733 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_003997041.1	KEGG: swd:Swoo_3876 hypothetical protein; SPTR: Putative uncharacterized protein N471L
YP_003997042.1	COGs: COG0657 Esterase/lipase; KEGG: dze:Dd1591_3247 alpha/beta hydrolase fold-3 domain protein; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_003997043.1	InterPro IPR014922; KEGG: sus:Acid_4948 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_003997044.1	COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: fba:FIC_01723 DNA-binding protein; SMART: helix-turN-helix domain protein; SPTR: DNA-binding protein; PFAM: Helix-turN-helix
YP_003997045.1	KEGG: fba:FIC_01722 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997046.1	KEGG: chu:CHU_1450 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997047.1	KEGG: dfe:Dfer_0778 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997048.1	InterPro IPR000595; KEGG: chu:CHU_1452 cyclic nucleotide binding regulatory protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_003997049.1	KEGG: chu:CHU_1725 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997050.1	KEGG: lbl:LBL_1294 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase
YP_003997051.1	COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: intradiol ring-cleavage dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Dioxygenase
YP_003997052.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: swd:Swoo_2437 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; PFAM: LytTr DNA-binding domain
YP_003997053.1	InterPro IPR019619; KEGG: sli:Slin_7028 protein of unknown function DUF2490; PFAM: Protein of unknown function DUF2490; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_003997054.1	InterPro IPR007272; KEGG: fba:FIC_01580 hypothetical protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395)
YP_003997055.1	InterPro IPR012657; KEGG: bth:BT_0352 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_003997056.1	InterPro IPR007272; KEGG: fba:FIC_01581 probable transmembrane protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395)
YP_003997057.1	COGs: COG3118 Thioredoxin domaiN-containing protein; InterPro IPR013766:IPR006662:IPR005746:IPR017936; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domaiN-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003997058.1	KEGG: bfs:BF2692 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997059.1	KEGG: sli:Slin_6447 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003997060.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: pgi:PG1570 rhodanese-like domaiN-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese family domain protein; PFAM: Rhodanese-like domain
YP_003997061.1	COGs: COG0491 ZN-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: fba:FIC_01582 metallo-beta-lactamase superfamily protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_003997063.1	COGs: COG0730 permease; InterPro IPR002781; KEGG: pgi:PG1572 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Membrane protein, putative; PFAM: Sulfite exporter TauE/SafE
YP_003997064.1	InterPro IPR012657; KEGG: fjo:Fjoh_1388 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_003997066.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: sfr:Sfri_1658 esterase; PFAM: esterase; SPTR: Putative uncharacterized protein; PFAM: Putative esterase
YP_003997067.1	InterPro IPR007069:IPR018060; KEGG: fba:FIC_01214 transposase; PFAM: transposase; SMART: Helix-turN-helix, AraC domain; SPTR: Transposase; PFAM: Putative transposase
YP_003997068.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: fjo:Fjoh_0862 hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Hydrolase; PFAM: haloacid dehalogenase-like hydrolase
YP_003997069.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: zpr:ZPR_3082 transcriptional regulator, Crp/Fnr family protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain
YP_003997070.1	KEGG: sag:SAG1103 6-phospho-beta-glucosidase; SPTR: 6-phospho-beta-glucosidase
YP_003997071.1	KEGG: fba:FIC_01981 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF937)
YP_003997072.1	COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: gfo:GFO_0277 uncharacterized stress protein (general stress protein 26); PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Uncharacterized stress protein (General stress protein 26); PFAM: Pyridoxamine 5'-phosphate oxidase
YP_003997073.1	InterPro IPR002514; KEGG: paa:Paes_2107 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003997074.1	KEGG: dfe:Dfer_2363 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997075.1	KEGG: sli:Slin_5064 conserved repeat domain protein; SPTR: Putative uncharacterized protein; PFAM: Pregnancy-associated plasma proteiN-A
YP_003997076.1	KEGG: sdn:Sden_2517 sulfate transport protein CysZ; SPTR: Soluble acid invertase 1
YP_003997077.1	COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: dfe:Dfer_4026 transposase IS204/IS1001/IS1096/IS1165 family protein; PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; SPTR: Transposase IS204/IS1001/IS1096/IS1165 family protein; PFAM: Transposase
YP_003997078.1	KEGG: dfe:Dfer_4025 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997079.1	COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918:IPR010074; KEGG: sli:Slin_2274 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_003997080.1	KEGG: dfe:Dfer_2374 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997081.1	COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR003135:IPR005875:IPR011761; KEGG: dfe:Dfer_5765 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein
YP_003997082.1	COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: phe:Phep_1897 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_003997083.1	InterPro IPR018392:IPR002482; KEGG: dfe:Dfer_5763 peptidoglycaN-binding LysM; PFAM: PeptidoglycaN-binding lysin domain; SMART: PeptidoglycaN-binding LysM; SPTR: PeptidoglycaN-binding LysM; PFAM: LysM domain
YP_003997084.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003997085.1	KEGG: sli:Slin_1383 hypothetical protein; SPTR: Lipoprotein
YP_003997086.1	KEGG: sli:Slin_1374 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997087.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347:IPR011284:IPR020904; KEGG: sli:Slin_1373 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_003997088.1	COGs: COG0313 methyltransferase; InterPro IPR000878:IPR008189:IPR018063; KEGG: dfe:Dfer_4999 uroporphyriN-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: UroporphyriN-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_003997089.1	KEGG: cpi:Cpin_5063 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997090.1	COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: dfe:Dfer_2724 hypothetical protein; PFAM: protein of unknown function DUF165; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein
YP_003997091.1	KEGG: cpi:Cpin_3068 metal-dependent hydrolase; SPTR: Putative uncharacterized protein
YP_003997092.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760:IPR020583:IPR020550; KEGG: sli:Slin_2273 inositol monophosphatase; PFAM: inositol monophosphatase; SPTR: Inositol monophosphatase; PFAM: Inositol monophosphatase family
YP_003997093.1	KEGG: dfe:Dfer_4998 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997094.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR001943:IPR013093:IPR 019489:IPR001270:IPR018368:IPR003593; KEGG: dfe:Dfer_5019 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATPase AAA-2 domain protein; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; UvrB/uvrC motif; ATPase family associated with various cellular activities (AAA)
YP_003997095.1	InterPro IPR014985; KEGG: sli:Slin_1369 WbqC-like family protein; PFAM: WbqC-like family protein; SPTR: WbqC-like family protein; PFAM: WbqC-like protein family
YP_003997096.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665:IPR006664; KEGG: sli:Slin_4643 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein; PFAM: OmpA family
YP_003997097.1	COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR005145:IPR004388:IPR010923; KEGG: sli:Slin_1394 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domaiN-containing protein; SPTR: Sua5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_003997098.1	COGs: COG0101 Pseudouridylate synthase; InterPro IPR020097:IPR001406; KEGG: fjo:Fjoh_4667 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_003997099.1	InterPro IPR020480; KEGG: zpr:ZPR_2440 nucleoside:proton symporter; SPTR: Nucleoside:H+ symporter; PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter
YP_003997100.1	COGs: COG0114 Fumarase; InterPro IPR000362:IPR018951:IPR005677:IPR020557; KEGG: sli:Slin_2694 fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; SPTR: Fumarate hydratase, class II; TIGRFAM: fumarate hydratase, class II; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II
YP_003997101.1	SPTR: Putative uncharacterized protein
YP_003997102.1	COGs: COG3391 conserved hypothetical protein; KEGG: sli:Slin_6860 40-residue YVTN family beta-propeller repeat protein; SPTR: 40-residue YVTN family beta-propeller repeat protein
YP_003997103.1	InterPro IPR000086; KEGG: dfe:Dfer_5005 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003997104.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372:IPR005790; KEGG: sli:Slin_1937 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_003997105.1	COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: cyc:PCC7424_1921 protein of unknown function DUF479; PFAM: protein of unknown function DUF479; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF479
YP_003997106.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125:IPR016192:IPR016473; KEGG: sli:Slin_1927 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003997107.1	InterPro IPR005829; KEGG: sli:Slin_1918 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pregnancy-associated plasma proteiN-A
YP_003997108.1	COGs: COG1702 Phosphate starvatioN-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dfe:Dfer_1072 PhoH family protein; PFAM: PhoH family protein; SPTR: PhoH family protein; PFAM: PhoH-like protein
YP_003997109.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR007693:IPR007694:IPR007692:IPR003593; KEGG: sli:Slin_1916 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_003997110.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: gym:GYMC10_6003 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003997111.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR006089; KEGG: chu:CHU_1408 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003997112.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR002986; KEGG: sli:Slin_0227 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_003997113.1	COGs: COG2235 Arginine deiminase; InterPro IPR003198:IPR003876; KEGG: dfe:Dfer_5777 arginine deiminase; PFAM: amidinotransferase; PRIAM: Arginine deiminase; SPTR: Arginine deiminase; PFAM: Amidinotransferase
YP_003997114.1	COGs: COG4874 Uncharacterized protein containing a penteiN-type domain; InterPro IPR014541; KEGG: sli:Slin_0193 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997115.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_3436 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003997116.1	COGs: COG3607 lactoylglutathione lyase; InterPro IPR004360; KEGG: aas:Aasi_0443 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_003997117.1	KEGG: dal:Dalk_5240 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997118.1	InterPro IPR008878; KEGG: zpr:ZPR_3984 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; PFAM: IS66 Orf2 like protein
YP_003997119.1	KEGG: tad:TRIADDRAFT_10277 hypothetical protein
YP_003997120.1	KEGG: cvi:CV_2861 hypothetical protein; SPTR: Ketosteroid isomerase-related proteiN-like protein
YP_003997121.1	KEGG: lil:LA_1841 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997122.1	KEGG: dpe:Dper_GL22673 GL22673 gene product from transcript GL22673-RA; SPTR: Polyphosphate kinase
YP_003997123.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011704:IPR003593; KEGG: hmo:HM1_2017 GTPase subunit of restriction endonuclease, putative; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: GTPase subunit of restriction endonuclease, putative; PFAM: AAA domain (dyneiN-related subfamily)
YP_003997124.1	KEGG: hmo:HM1_2016 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997126.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: zpr:ZPR_0707 glycosyl transferase family protein; SPTR: Glycosyl transferase family protein
YP_003997127.1	KEGG: msm:MSMEG_0349 virulence factor mce family protein; SPTR: Virulence factor mce family protein
YP_003997128.1	KEGG: swp:swp_0637 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997129.1	KEGG: nmu:Nmul_A1880 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997130.1	KEGG: ayw:AYWB_pI02 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997131.1	KEGG: chu:CHU_1187 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997132.1	KEGG: fps:FP2318 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997133.1	KEGG: deb:DehaBAV1_1005 secreted endonuclease distantly related to Holliday junction resolvase-like protein; SPTR: Putative uncharacterized protein
YP_003997134.1	KEGG: pla:Plav_2049 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997135.1	KEGG: dsa:Desal_0324 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997136.1	KEGG: bps:BPSL0568 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997137.1	KEGG: rno:100361422 rCG38005-like; SPTR: Putative uncharacterized protein ENSRNOP00000048952
YP_003997138.1	COGs: COG4938 conserved hypothetical protein; KEGG: lbf:LBF_2452 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3696)
YP_003997139.1	InterPro IPR004919; KEGG: lbf:LBF_2453 hypothetical protein; PFAM: protein of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF262
YP_003997140.1	InterPro IPR001387; KEGG: fps:FP0735 DNA binding protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: DNA-binding protein; PFAM: Helix-turN-helix
YP_003997141.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: gfo:GFO_1996 integrase/transposase; PFAM: Integrase catalytic region; SPTR: Integrase; manually curated; PFAM: Integrase core domain
YP_003997142.1	InterPro IPR002514; KEGG: paa:Paes_2107 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003997143.1	COGs: COG5545 P-loop ATPase and inactivated derivatives; InterPro IPR014907:IPR007936; KEGG: fps:FP2173 hypothetical protein; PFAM: VirE; virulence-associated E family protein; SPTR: Putative uncharacterized protein; PFAM: VirE N-terminal domain; Virulence-associated protein E
YP_003997144.1	KEGG: fps:FP2174 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997145.1	KEGG: fps:FP2176 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997146.1	InterPro IPR013096; KEGG: bha:BH0377 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_003997147.1	KEGG: fjo:Fjoh_2482 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1572)
YP_003997148.1	COGs: COG3911 ATPase; KEGG: zpr:ZPR_0715 P-loop containing nucleoside triphosphate hydrolase; SPTR: ATPase-like protein; PFAM: Predicted ATPase of the ABC class
YP_003997149.1	KEGG: cpi:Cpin_0187 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase
YP_003997150.1	InterPro IPR007837:IPR007087; KEGG: gau:GAU_3357 hypothetical protein; PFAM: DinB family protein; SPTR: Putative uncharacterized protein; PFAM: DinB family
YP_003997151.1	KEGG: bce:BC4619 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997152.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: mag:amb3601 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Phenylacetic acid degradation protein paai; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003997153.1	InterPro IPR000182; KEGG: phe:Phep_1633 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997154.1	KEGG: fba:FIC_01415 hypothetical protein; SPTR: Metal-dependent hydrolase; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain
YP_003997155.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chaiN-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_003997156.1	InterPro IPR000182; KEGG: cpi:Cpin_2927 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997157.1	InterPro IPR000182; KEGG: fjo:Fjoh_1285 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_003997158.1	InterPro IPR000620; KEGG: dfe:Dfer_1183 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family
YP_003997159.1	COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: pdi:BDI_1253 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family/aminotransferase class-I; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family
YP_003997160.1	COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991:IPR017926; KEGG: paa:Paes_2153 glutamine amidotransferase class-I; PFAM: glutamine amidotransferase class-I; SPTR: Putative amino transferase; PFAM: Glutamine amidotransferase class-I
YP_003997161.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608:IPR011078; KEGG: coc:Coch_0906 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: Alanine racemase domaiN-containing protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003997162.1	InterPro IPR000182:IPR008125; KEGG: fjo:Fjoh_4873 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Probable acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997163.1	KEGG: cpi:Cpin_6052 thioredoxin; SPTR: Thioredoxin
YP_003997164.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: mxa:MXAN_6731 dihydrodipicolinate synthase family protein; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family
YP_003997165.1	COGs: COG3435 Gentisate 1 2-dioxygenase; InterPro IPR013096; KEGG: svo:SVI_2216 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin domain protein; PFAM: Cupin domain
YP_003997166.1	COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: cpi:Cpin_6053 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family with aminotransferase domain; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family
YP_003997167.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125:IPR016192; KEGG: zpr:ZPR_1903 guanine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Guanine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003997168.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cat:CA2559_00445 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase family
YP_003997169.1	KEGG: chu:CHU_1860 cell wall protein; SPTR: Cobalamin biosynthesis protein CobT (Nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
YP_003997170.1	KEGG: dfe:Dfer_0120 protein of unknown function DUF303 acetylesterase putative; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303)
YP_003997171.1	KEGG: fjo:Fjoh_3970 TonB-dependent receptor; SPTR: TonB-dependent receptor
YP_003997172.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003997173.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003997174.1	KEGG: ddr:Deide_2p00720 acetyltransferase; SPTR: GCN5-related N-acetyltransferase
YP_003997175.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: bth:BT_1006 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase; manually curated; PFAM: Nitroreductase family
YP_003997176.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_2584 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003997177.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_1160 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_003997178.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_0257 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: RND family efflux transporter, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003997179.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003997180.1	COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterPro IPR013650:IPR005811:IPR005809:IPR017866; KEGG: sli:Slin_0981 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_003997181.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR015854:IPR017871:IPR003593; KEGG: dfe:Dfer_2735 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003997182.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: sli:Slin_4055 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997183.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_3739 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003997184.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR001991; KEGG: sli:Slin_1640 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family
YP_003997185.1	InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_3219 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein; manually curated
YP_003997186.1	COGs: COG0491 ZN-dependent hydrolase including glyoxylase; KEGG: dfe:Dfer_4741 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003997187.1	KEGG: sli:Slin_5463 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997188.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545:IPR001650:IPR018329:IPR014021:IPR 014001; KEGG: sli:Slin_5465 ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; manually curated; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family
YP_003997189.1	KEGG: osa:4325092 hypothetical protein; SPTR: KCBP-like kinesin
YP_003997190.1	COGs: COG1646 phosphate-binding protein with TIM-barrel fold; InterPro IPR008205:IPR010946; KEGG: dfe:Dfer_4244 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: PcrB family protein; SPTR: Geranylgeranylglyceryl phosphate synthase; TIGRFAM: geranylgeranylglyceryl phosphate synthase family protein; geranylgeranylglyceryl phosphate synthase; manually curated; PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; geranylgeranylglyceryl phosphate synthase family protein; tryptophan synthase, alpha subunit
YP_003997191.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpteriN-pyrophosphokinase; InterPro IPR000550; KEGG: chu:CHU_2468 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro-6-hydroxymethylpteriN-pyrophosphokinase); PFAM: 78-dihydro-6-hydroxymethylpteriN-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inediphosphokinase(7,8-dihydro-6-hydroxymethylpteriN-pyrop hosphokinase); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpteriN-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_003997192.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: npu:Npun_R5713 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Possible mannosyltransferase I; PFAM: Glycosyl transferases group 1
YP_003997193.1	COGs: COG2360 Leu/Phe-tRNA-protein transferase; InterPro IPR004616; KEGG: sli:Slin_0427 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_003997194.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: sli:Slin_3159 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain
YP_003997195.1	COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: dfe:Dfer_2675 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_003997196.1	KEGG: tye:THEYE_A1197 probable phosphoenolpyruvate synthase/pyruvate phosphate dikinase; SPTR: Probable phosphoenolpyruvate synthase/pyruvate phosphate dikinase
YP_003997197.1	InterPro IPR000182; KEGG: fjo:Fjoh_3407 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997198.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: dfe:Dfer_0088 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily
YP_003997199.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR017178; KEGG: sli:Slin_1366 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; SPTR: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_003997200.1	KEGG: sli:Slin_1365 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997201.1	COGs: COG2315 conserved hypothetical protein; KEGG: dfe:Dfer_0459 protein of unknown function DUF419; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF419)
YP_003997202.1	COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: aeh:Mlg_0302 hypothetical protein; PFAM: AIG2 family protein; SPTR: Putative uncharacterized protein; PFAM: AIG2-like family
YP_003997203.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: coc:Coch_1593 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_003997204.1	COGs: COG3118 Thioredoxin domaiN-containing protein; InterProIPR013766:IPR006662:IPR005746:IPR017936:IPR 017937; KEGG: sli:Slin_0530 thioredoxin; PFAM: Thioredoxin domaiN-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003997205.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_0433 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Aminotransferase class-III; PFAM: Aminotransferase class-III
YP_003997206.1	KEGG: dfe:Dfer_0434 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997207.1	COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991:IPR017926; KEGG: dfe:Dfer_0435 hypothetical protein; PFAM: glutamine amidotransferase class-I; SPTR: Putative uncharacterized protein; PFAM: Glutamine amidotransferase class-I
YP_003997208.1	COGs: COG2170 conserved hypothetical protein; InterPro IPR006336:IPR011793; KEGG: dfe:Dfer_0436 carboxylate-amine ligase; PFAM: glutamate--cysteine ligase GCS2; SPTR: Carboxylate-amine ligase Dfer_0436; PFAM: Glutamate-cysteine ligase family 2(GCS2); TIGRFAM: uncharacterized enzyme
YP_003997209.1	COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR011761; KEGG: fba:FIC_01388 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein; SPTR: Glutathione synthase/ribosomal protein S6 modification glutaminyl transferase-like protein
YP_003997210.1	COGs: COG4947 conserved hypothetical protein; KEGG: dfe:Dfer_0438 esterase; SPTR: Putative esterase; manually curated; PFAM: Putative esterase
YP_003997211.1	COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1341 esterase; PFAM: esterase; SPTR: Putative esterase; PFAM: Putative esterase
YP_003997212.1	KEGG: dfe:Dfer_0440 acyl-CoA reductase; SPTR: Acyl-CoA reductase; PFAM: Acyl-CoA reductase (LuxC)
YP_003997213.1	InterPro IPR017896:IPR017900; KEGG: sli:Slin_1345 4Fe-4S ferredoxin iroN-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iroN-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_003997214.1	KEGG: sli:Slin_1346 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997215.1	COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: dfe:Dfer_0443 ammonium transporter; PFAM: ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_003997216.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003997217.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848:IPR007197:IPR005839:IPR006467:IPR 020612:IPR006638; KEGG: dfe:Dfer_0444 MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family
YP_003997218.1	COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: dfe:Dfer_0448 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain
YP_003997219.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013:IPR002054:IPR003141; KEGG: dfe:Dfer_5653 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; DNA polymerase X; SPTR: PHP domain protein; PFAM: PHP domain
YP_003997220.1	InterPro IPR004692; KEGG: dfe:Dfer_2731 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Putative uncharacterized protein; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_003997221.1	KEGG: ana:all4121 ferredoxiN--NADP(+) reductase; SPTR: Glycoside hydrolase family 63
YP_003997222.1	KEGG: sli:Slin_0989 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997223.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR002197:IPR020441:IPR003593; KEGG: sli:Slin_0990 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domaiN-containing protein; helix-turN-helix Fis-type; SMART: AAA ATPase; SPTR: Sigma54 specific transcriptional regulator, Fis family; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003997224.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848:IPR007197:IPR002792:IPR005839:IPR 006463:IPR020612:IPR006638; KEGG: sli:Slin_0991 RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_003997225.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rbi:RB2501_05190 hypothetical protein; PFAM: beta-lactamase; SPTR: Putative uncharacterized protein; PFAM: Beta-lactamase
YP_003997226.1	COGs: COG3828 conserved hypothetical protein; InterPro IPR001202; KEGG: dfe:Dfer_2188 cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Trehalose utilisation
YP_003997227.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR000601:IPR003088:IPR002324:IPR009056:IPR 001202; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: cytochrome c class I; PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Cytochrome c class I; PFAM: Cytochrome c; Trehalose utilisation
YP_003997228.1	COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR009056; KEGG: dfe:Dfer_4620 heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Heme-binding protein; PFAM: HEAT repeat; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type
YP_003997229.1	COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: dfe:Dfer_1224 ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_003997230.1	COGs: COG0291 Ribosomal protein L35; InterPro IPR021137:IPR001706:IPR018265; KEGG: sli:Slin_2217 ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_003997231.1	COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013:IPR011708:IPR004365:IPR004805:IPR 003141; KEGG: sli:Slin_0531 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_003997232.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: pdi:BDI_0047 acetyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: Putative lipd A biosynthesis related exported protein; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_003997233.1	COGs: COG2068 Uncharacterized MobA-related protein; KEGG: aca:ACP_2323 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997234.1	InterPro IPR002035; KEGG: sus:Acid_2953 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain
YP_003997235.1	COGs: COG0783 DNA-binding ferritiN-like protein (oxidative damage protectant); InterPro IPR008331:IPR002177; KEGG: cpi:Cpin_0319 ferritin Dps family protein; PFAM: Ferritin Dps family protein; SPTR: Ferritin Dps family protein; PFAM: FerritiN-like domain
YP_003997236.1	COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: phe:Phep_4181 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF-type NAD/FAD binding protein; PFAM: ThiF family
YP_003997237.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR012278; KEGG: fjo:Fjoh_2775 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: TatD-related deoxyribonuclease; PFAM: TatD related DNase
YP_003997238.1	COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: zpr:ZPR_0012 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family
YP_003997239.1	COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036; KEGG: dfe:Dfer_3801 protein of unknown function UPF0054; PFAM: protein of unknown function UPF0054; SPTR: Putative metalloprotease Dfer_3801; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family
YP_003997240.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: dfe:Dfer_2808 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family
YP_003997241.1	InterPro IPR000866:IPR017936; KEGG: cpi:Cpin_3149 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family
YP_003997242.1	COGs: COG0791 Cell wall-associated hydrolase (invasioN-associated protein); InterPro IPR000064; KEGG: sli:Slin_0670 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: NLP/P60 protein; PFAM: NlpC/P60 family
YP_003997243.1	COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: phe:Phep_1914 WD40 domain protein beta propeller; PFAM: WD40-like beta Propeller containing protein; SPTR: WD40 domain protein beta Propeller; PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003997244.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568:IPR018201; KEGG: chu:CHU_2863 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_003997245.1	InterPro IPR001647; KEGG: fjo:Fjoh_4313 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003997246.1	COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: sli:Slin_5458 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC family protein; PFAM: MgtC family
YP_003997247.1	KEGG: dfe:Dfer_4554 integral membrane protein; SPTR: Integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003997248.1	COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: sli:Slin_3464 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_003997249.1	COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: sli:Slin_1073 aminotransferase class V; PFAM: aminotransferase class V; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, putative; phosphoserine aminotransferase
YP_003997250.1	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: dfe:Dfer_3270 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_003997251.1	COGs: COG1803 Methylglyoxal synthase; InterPro IPR011607:IPR004363:IPR018148; KEGG: cli:Clim_1144 methylglyoxal synthase; PFAM: MGS domain protein; PRIAM: Methylglyoxal synthase; SPTR: Methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase
YP_003997252.1	KEGG: dfe:Dfer_4427 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997254.1	COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: sli:Slin_0810 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_003997255.1	InterPro IPR000297; KEGG: sli:Slin_0807 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: OmpA family; PPIC-type PPIASE domain
YP_003997256.1	COGs: COG0760 ParvuliN-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: dfe:Dfer_2499 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_003997257.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703:IPR016366; KEGG: sli:Slin_0805 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: ATPase associated with various cellular activities AAA_3; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003997258.1	COGs: COG2220 ZN-dependent hydrolase of the beta-lactamase fold; KEGG: cpi:Cpin_5728 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily
YP_003997259.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740; KEGG: dfe:Dfer_4974 GrpE protein; PFAM: GrpE protein; SPTR: GrpE protein; PFAM: GrpE
YP_003997260.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR001305:IPR002939:IPR003095:IPR 012724:IPR018253; KEGG: sli:Slin_1521 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_003997261.1	COGs: COG4430 conserved hypothetical protein; InterPro IPR014922; KEGG: rbi:RB2501_11317 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_003997262.1	KEGG: tva:TVAG_438360 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997263.1	KEGG: ptm:GSPATT00014607001 hypothetical protein; SPTR: Phosphoribosylformylglycinamidine synthase
YP_003997264.1	COGs: COG4783 Putative ZN-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sli:Slin_0980 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: Peptidase M48 Ste24p; PFAM: Peptidase family M48
YP_003997265.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: sli:Slin_0979 fumarylacetoacetate (FAA) hydrolase; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_003997266.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: sli:Slin_0978 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23
YP_003997267.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866:IPR017936; KEGG: dfe:Dfer_2937 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PRIAM: Peroxiredoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_003997268.1	InterPro IPR008756:IPR006260; KEGG: sli:Slin_6187 TonB family protein; PFAM: peptidase M56 BlaR1; TonB domain; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_003997269.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: phe:Phep_0214 penicillinase repressor; PFAM: Penicillinase repressor; SPTR: Putative antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor
YP_003997270.1	COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: dfe:Dfer_2936 transketolase domain protein; PFAM: Transketolase domaiN-containing protein; SPTR: Transketolase domain protein; PFAM: Transketolase, thiamine diphosphate binding domain
YP_003997271.1	COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: phe:Phep_0873 transketolase central region; PFAM: Transketolase central region; Transketolase domaiN-containing protein; SPTR: Transketolase central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_003997272.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR000838; KEGG: sli:Slin_0974 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003997273.1	KEGG: cpi:Cpin_0185 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997274.1	KEGG: dfe:Dfer_2932 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997275.1	InterPro IPR020003; KEGG: fps:FP1621 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997276.1	KEGG: yli:YALI0F30855g YALI0F30855p; SPTR: ErpL protein
YP_003997277.1	KEGG: sfu:Sfum_2201 hypothetical protein; SPTR: Peptidase M23B
YP_003997278.1	COGs: COG1946 Acyl-CoA thioesterase; InterPro IPR003703; KEGG: psb:Psyr_4293 acyl-CoA thioesterase; PFAM: acyl-CoA thioesterase; PRIAM: Choloyl-CoA hydrolase; SPTR: Palmitoyl-CoA hydrolase; PFAM: Acyl-CoA thioesterase; TIGRFAM: acyl-CoA thioesterase II
YP_003997279.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: rbi:RB2501_07750 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase
YP_003997280.1	KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997281.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506; KEGG: dfe:Dfer_2662 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_003997282.1	KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase
YP_003997283.1	InterPro IPR007168; KEGG: sli:Slin_0952 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain
YP_003997284.1	InterPro IPR008162; KEGG: dfe:Dfer_2826 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997285.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_2865 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003997286.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR000991:IPR001674:IPR011702:IPR004739:IPR 017926; KEGG: sli:Slin_2862 GMP synthase, large subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; SPTR: GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_003997287.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481:IPR018480; KEGG: sli:Slin_2593 glycosyl transferase, family 4, conserved region; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase, family 4, conserved region; PFAM: Glycosyl transferase family 4
YP_003997288.1	COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: dfe:Dfer_0251 colanic acid biosynthesis acetyltransferase WcaF; PFAM: transferase hexapeptide repeat containing protein; SPTR: Acetyltransferase
YP_003997289.1	COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: yli:YALI0F17644g YALI0F17644p; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase (NADP(+)); SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_003997290.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family
YP_003997291.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1771 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family
YP_003997292.1	KEGG: dfe:Dfer_3149 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Nucleotidyl transferase
YP_003997293.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3250 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_003997294.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182:IPR011923:IPR018365; KEGG: sli:Slin_3201 cell cycle protein; PFAM: cell cycle protein; SPTR: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_003997295.1	COGs: COG0768 Cell division protein FtsI/penicilliN-binding protein 2; InterPro IPR005311:IPR001460; KEGG: dfe:Dfer_2015 penicilliN-binding protein 2; PFAM: penicilliN-binding protein transpeptidase; PenicilliN-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: PenicilliN-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; PenicilliN-binding Protein dimerisation domain; TIGRFAM: penicilliN-binding protein 2
YP_003997296.1	COGs: COG2388 acetyltransferase; KEGG: fjo:Fjoh_3492 GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997297.1	COGs: COG3592 conserved hypothetical protein; KEGG: bth:BT_1494 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1271)
YP_003997298.1	COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003778; KEGG: bcu:BCAH820_3101 UreA amidolyase-related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; SPTR: Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotiN-dependent carboxylase uncharacterized domain
YP_003997299.1	COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: sca:Sca_2038 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: UPF0271 protein Sca_2038; PFAM: LamB/YcsF family
YP_003997300.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: phe:Phep_3737 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003997301.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_3207 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003997302.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_3208 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003997303.1	COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: dfe:Dfer_4281 transmembrane transport protein; SPTR: Putative transmembrane transport protein; PFAM: Natural resistance-associated macrophage protein
YP_003997304.1	KEGG: dfe:Dfer_2928 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997305.1	InterPro IPR001763; KEGG: sli:Slin_1457 rhodanese domaiN-containing protein; SPTR: Rhodanese domaiN-containing protein; PFAM: Rhodanese-like domain
YP_003997306.1	COGs: COG2003 DNA repair protein; InterPro IPR001405:IPR020891; KEGG: sli:Slin_0523 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_003997307.1	InterPro IPR002583; KEGG: coc:Coch_1511 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_003997308.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_1715 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_003997309.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933:IPR011650:IPR010168:IPR017439; KEGG: dfe:Dfer_2714 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_003997310.1	COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR004388; KEGG: dfe:Dfer_5017 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_003997311.1	InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6566 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003997312.1	InterPro IPR012944; KEGG: cpi:Cpin_6565 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003997313.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR006089; KEGG: cpi:Cpin_3323 glutaryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Acyl-CoA oxidase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003997314.1	KEGG: tcr:506943.100 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997315.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fba:FIC_01412 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: cyclic nucleotide-binding; SPTR: cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: Cyclic nucleotide-binding domain
YP_003997316.1	InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_1991 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat
YP_003997317.1	KEGG: dfe:Dfer_1053 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997318.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912; KEGG: dfe:Dfer_4690 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; SPTR: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; D-3-phosphoglycerate dehydrogenase
YP_003997319.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR008910:IPR006685; KEGG: cps:CPS_1419 mechanosensitive ion channel family protein; PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; SPTR: Mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel; Conserved TM helix
YP_003997320.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: sli:Slin_0040 peroxiredoxin; PFAM: glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase
YP_003997321.1	COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537:IPR004657; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
YP_003997322.1	KEGG: dfe:Dfer_0026 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997323.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_5243 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003997324.1	InterPro IPR002781; KEGG: pat:Patl_2981 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Integral membrane protein; PFAM: Sulfite exporter TauE/SafE
YP_003997325.1	COGs: COG2183 Transcriptional accessory protein; InterPro IPR018974:IPR003029:IPR006641; KEGG: dfe:Dfer_1085 RNA binding S1 domain protein; PFAM: Tex-like proteiN-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; SPTR: RNA binding S1 domain protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpiN-helix repeat region
YP_003997326.1	KEGG: sli:Slin_5491 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997327.1	COGs: COG2081 flavoprotein; InterPro IPR004792:IPR013027; KEGG: cat:CA2559_04960 hypothetical protein; PFAM: HI0933 family protein; SPTR: Putative uncharacterized protein; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family
YP_003997328.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fps:FP2136 integrase/recombinase; PFAM: integrase family protein; SPTR: Integrase/recombinase; PFAM: Phage integrase family
YP_003997329.1	COGs: COG1741 PiriN-related protein; InterPro IPR003829:IPR008778:IPR012093; KEGG: fjo:Fjoh_3490 pirin domaiN-containing protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin
YP_003997330.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR017821; KEGG: bba:Bd1620 acetyl-CoA hydrolase/transferase family protein; PFAM: acetyl-CoA hydrolase/transferase; PRIAM: Acetyl-CoA hydrolase; SPTR: Acetyl-CoA hydrolase/transferase family protein; TIGRFAM: succinate CoA transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; Citrate lyase, alpha subunit (CitF); TIGRFAM: succinate CoA transferases
YP_003997331.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 006073:IPR005225:IPR003373; KEGG: fps:FP0090 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domaiN-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domaiN-containing protein; SPTR: Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003997332.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: fjo:Fjoh_0961 FeoA family protein; PFAM: FeoA family protein; SPTR: FeoA family protein; PFAM: FeoA domain
YP_003997333.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR019800; KEGG: bth:BT_4714 periplasmic beta-glucosidase precursor, xylosidase/arabinosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Periplasmic beta-glucosidase, xylosidase/arabinosidase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003997334.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096:IPR006095:IPR014362; KEGG: zpr:ZPR_0160 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: Glutamate dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_003997335.1	COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR013542:IPR004453:IPR017896:IPR017900; KEGG: sli:Slin_1519 iroN-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; SPTR: IroN-sulfur cluster binding protein; TIGRFAM: iroN-sulfur cluster binding protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iroN-sulfur cluster binding protein, putative
YP_003997336.1	COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832:IPR001189:IPR019833; KEGG: cpi:Cpin_1061 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; PRIAM: Superoxide dismutase; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_003997337.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR015967:IPR006171:IPR000093:IPR006154; KEGG: dfe:Dfer_2905 recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domaiN-containing protein; SMART: Toprim sub domaiN-containing protein; SPTR: Recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_003997338.1	InterPro IPR003769; KEGG: sli:Slin_1599 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS
YP_003997339.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_2903 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family
YP_003997340.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: phe:Phep_1133 protein of unknown function DUF323; PFAM: protein of unknown function DUF323; SPTR: Protein of hypothetical function DUF323; PFAM: Formylglycine-generating sulfatase enzyme
YP_003997341.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311:IPR017909; KEGG: phe:Phep_1134 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003997342.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_6441 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Transcriptional regulator, LuxR family protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003997343.1	KEGG: pfd:PFDG_00836 conserved hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997344.1	KEGG: hau:Haur_3561 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997345.1	InterPro IPR002575:IPR000719; KEGG: drm:Dred_3288 choline/ethanolamine kinase; PFAM: aminoglycoside phosphotransferase; SPTR: Choline/ethanolamine kinase; PFAM: Choline/ethanolamine kinase
YP_003997346.1	KEGG: sus:Acid_6415 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997347.1	COGs: COG4585 Signal transduction histidine kinase; InterProIPR001440:IPR011712:IPR003594:IPR019734:IPR 013026; KEGG: dfe:Dfer_0415 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003997348.1	InterPro IPR007492; KEGG: sli:Slin_3848 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator; PFAM: LytTr DNA-binding domain
YP_003997349.1	KEGG: rsc:RCFBP_10528 hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
YP_003997350.1	KEGG: autotransporter/virulence factor; SPTR: Glycoside hydrolase family 26
YP_003997351.1	COGs: COG1284 conserved hypothetical protein; InterPro IPR006674:IPR003740:IPR019264; KEGG: phe:Phep_3548 protein of unknown function DUF161; PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; metal-dependent phosphohydrolase HD sub domain; SPTR: Putative uncharacterized protein; PFAM: HD domain; Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179)
YP_003997352.1	COGs: COG1981 membrane protein; InterPro IPR005265:IPR014351; KEGG: phe:Phep_3443 hypothetical protein; PFAM: Uncharacterised protein family UPF0093; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein
YP_003997353.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_003997354.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR005982:IPR000103; KEGG: chu:CHU_1778 thioredoxiN-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: ThioredoxiN-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxiN-disulfide reductase
YP_003997355.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627:IPR018022; KEGG: dfe:Dfer_0552 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_003997356.1	KEGG: dfe:Dfer_0551 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997357.1	KEGG: sli:Slin_2967 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_003997358.1	COGs: COG0579 dehydrogenase; InterPro IPR006231; KEGG: cpi:Cpin_2378 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; PRIAM: Malate dehydrogenase (acceptor); SPTR: Probable malate:quinone oxidoreductase; TIGRFAM: malate/quinone oxidoreductase; PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase
YP_003997359.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665:IPR006664; KEGG: dfe:Dfer_3868 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_003997360.1	KEGG: tsi:TSIB_0695 pyrimidine dimer DNA glycosylase; SPTR: Pyrimidine dimer DNA glycosylase; PFAM: Pyrimidine dimer DNA glycosylase
YP_003997361.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR017456:IPR000991:IPR017926:IPR004468; KEGG: dfe:Dfer_1151 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_003997362.1	COGs: COG0604 NADPH:quinone reductase and related ZN-dependent oxidoreductase; InterPro IPR013154:IPR013149:IPR014188; KEGG: pag:PLES_34941 oxidoreductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Probable oxidoreductase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family
YP_003997363.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737:IPR011530:IPR020596:IPR020598; KEGG: dfe:Dfer_5760 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_003997364.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR008207:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: dfe:Dfer_5761 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box
YP_003997365.1	KEGG: sli:Slin_3529 transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; PFAM: Transglycosylase associated protein
YP_003997366.1	COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR007055:IPR018392:IPR002482; KEGG: dfe:Dfer_2006 peptidoglycaN-binding LysM; PFAM: PeptidoglycaN-binding lysin domain; transport-associated; SMART: PeptidoglycaN-binding LysM; SPTR: PeptidoglycaN-binding LysM; PFAM: Putative phospholipid-binding domain; LysM domain
YP_003997367.1	KEGG: phe:Phep_0632 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: ubiE/COQ5 methyltransferase family
YP_003997368.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4450 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase family M1
YP_003997369.1	COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_0466 glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter
YP_003997370.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: coc:Coch_1827 purine or other phosphorylase family 1; PFAM: purine or other phosphorylase family 1; SPTR: Purine or other phosphorylase family 1; PFAM: Phosphorylase superfamily
YP_003997371.1	COGs: COG0295 Cytidine deaminase; InterPro IPR002125:IPR016192; KEGG: fjo:Fjoh_1554 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_003997372.1	KEGG: rfe:RF_0224 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cryptococcal mannosyltransferase 1
YP_003997373.1	InterPro IPR008166; KEGG: dde:Dde_2772 hypothetical protein; PFAM: protein of unknown function DUF23; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function
YP_003997374.1	COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818:IPR001476; KEGG: sli:Slin_0985 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_003997375.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR002423:IPR001844:IPR018370; KEGG: chu:CHU_1828 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_003997376.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003997377.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: sli:Slin_5847 LemA family protein; PFAM: LemA family protein; SPTR: LemA family protein; PFAM: LemA family
YP_003997378.1	COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: dfe:Dfer_4335 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477)
YP_003997379.1	COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sli:Slin_5849 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; manually curated; PFAM: Domain of unknown function (DUF477)
YP_003997380.1	InterPro IPR001911:IPR018278; KEGG: dfe:Dfer_3927 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_003997381.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: dfe:Dfer_3928 integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_003997382.1	COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_4942 aminopeptidase precursor; SPTR: Putative aminopeptidase
YP_003997383.1	COGs: COG2912 conserved hypothetical protein; KEGG: sli:Slin_5838 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997384.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR005886; KEGG: dfe:Dfer_2894 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_003997385.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: dfe:Dfer_2895 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_003997386.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: sli:Slin_5841 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_003997387.1	KEGG: cse:Cseg_0880 dehydrogenase; SPTR: ThiJ/PfpI family
YP_003997388.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994:IPR001131; KEGG: cpi:Cpin_5101 peptidase M24; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; SPTR: Peptidase M24; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24
YP_003997389.1	KEGG: syp:SYNPCC7002_A0415 glycosyl transferase family protein; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 11
YP_003997390.1	InterPro IPR013222; KEGG: nwi:Nwi_0540 hypothetical protein; PFAM: Glycosyl hydrolase family 98 carbohydrate binding module; SMART: Glycosyl hydrolase family 98 carbohydrate binding module; SPTR: Carbohydrate-binding CenC domain protein; PFAM: NPCBM/NEW2 domain
YP_003997391.1	KEGG: nha:Nham_3304 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cephalosporin hydroxylase
YP_003997392.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004558; KEGG: sli:Slin_3571 oxygeN-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: OxygeN-independent coproporphyrinogen III oxidase; TIGRFAM: oxygeN-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygeN-independent coproporphyrinogen III oxidase
YP_003997393.1	COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006137:IPR006138; KEGG: dfe:Dfer_2472 NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_003997394.1	COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: dfe:Dfer_2467 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_003997395.1	COGs: COG2935 Putative arginyl-tRNA:protein arginylyltransferase; InterPro IPR007472; KEGG: chu:CHU_2143 arginyl-tRNA:protein arginylyltransferase; PFAM: Arginine-tRNA-protein transferase domain protein; SPTR: Arginyl-tRNA:protein arginylyltransferase; PFAM: Arginine-tRNA-protein transferase, C terminus
YP_003997396.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: dfe:Dfer_4989 magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_003997397.1	COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR001926; KEGG: dfe:Dfer_2577 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme
YP_003997398.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR002942:IPR006145:IPR017964:IPR006224:IPR 006225; KEGG: dfe:Dfer_2578 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_003997399.1	InterPro IPR000182; KEGG: sli:Slin_1389 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: Diamine N-acetyltransferase; SPTR: Possible diamine N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997400.1	COGs: COG3241 Azurin; InterPro IPR000923:IPR014068; KEGG: dfe:Dfer_2909 azurin; PFAM: blue (type 1) copper domain protein; SPTR: Azurin; TIGRFAM: azurin; PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: azurin
YP_003997401.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1750 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: O-succinylbenzoic acid--CoA ligase; PFAM: AMP-binding enzyme
YP_003997402.1	KEGG: dfe:Dfer_1214 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997403.1	InterPro IPR001387; KEGG: chu:CHU_1881 transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Transcriptional regulator; PFAM: Helix-turN-helix
YP_003997404.1	COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: dfe:Dfer_5624 ATP-dependent protease peptidase subunit; PFAM: 20S proteasome A and B subunits; SPTR: 20S proteasome A and B subunits; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit
YP_003997405.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078:IPR003016; KEGG: chu:CHU_1755 dihydrolipoyllysine-residue acetyltransferase (dihydrolipoamide S-acetyltransferase); PFAM: catalytic domaiN-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domaiN-containing protein; E3 binding domain protein; SPTR: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; BiotiN-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_003997406.1	COGs: COG0481 Membrane GTPase LepA; InterProIPR000795:IPR004161:IPR000640:IPR013842:IPR 006297:IPR005225; KEGG: dfe:Dfer_5632 GTP-binding protein LepA; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domaiN-containing protein; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_003997407.1	KEGG: sli:Slin_4922 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997408.1	KEGG: dfe:Dfer_5608 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003997409.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_0794 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003997410.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109:IPR006118; KEGG: zpr:ZPR_3469 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain
YP_003997411.1	KEGG: zpr:ZPR_3495 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997412.1	InterPro IPR014942; KEGG: fjo:Fjoh_3621 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003997413.1	KEGG: fjo:Fjoh_3622 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997414.1	KEGG: pmg:P9301_10901 aminopeptidase N; SPTR: Probable aminopeptidase N
YP_003997415.1	KEGG: pvx:PVX_114990 guanylyl cyclase; SPTR: Guanylyl cyclase, putative
YP_003997416.1	KEGG: pmj:P9211_00581 bacteriocin/lantibiotic ABC transporter; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003997417.1	KEGG: dfe:Dfer_5228 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997418.1	KEGG: dfe:Dfer_5229 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997419.1	KEGG: dfe:Dfer_5230 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997420.1	InterPro IPR005094; KEGG: dfe:Dfer_5231 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain
YP_003997421.1	InterPro IPR001387; KEGG: dfe:Dfer_0967 helix-turN-helix domain protein; SPTR: Helix-turN-helix domain protein
YP_003997422.1	InterPro IPR001387:IPR018126; KEGG: drm:Dred_0020 XRE family transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003997423.1	InterPro IPR001387; KEGG: fjo:Fjoh_3106 XRE family transcriptional regulator; PFAM: helix-turN-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turN-helix
YP_003997424.1	KEGG: amt:Amet_4677 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997425.1	KEGG: oaa:100076365 similar to munc 13-1; SPTR: Putative uncharacterized protein
YP_003997426.1	COGs: COG0610 Type I site-specific restrictioN-modification system R (restriction) subunit and related helicase; InterProIPR007409:IPR006935:IPR014021:IPR014001:IPR 004473; KEGG: fjo:Fjoh_4396 HsdR family type I site-specific deoxyribonuclease; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; Type I restriction and modification enzyme - subunit R C terminal; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_003997427.1	InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_003997428.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cte:CT1880 type I restriction system specificity protein; PFAM: restriction modification system DNA specificity domain; SPTR: Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain
YP_003997429.1	COGs: COG3943 Virulence protein; InterPro IPR011204; KEGG: apj:APJL_0299 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997430.1	COGs: COG0286 Type I restrictioN-modification system methyltransferase subunit; InterPro IPR003356:IPR002052:IPR004546:IPR002296; KEGG: fjo:Fjoh_4393 type I restrictioN-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restrictioN-modification system, M subunit; TIGRFAM: type I restrictioN-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_003997431.1	InterPro IPR001387; KEGG: gfo:GFO_0879 HTH_3 family transcriptional regulator protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: HTH_3 family transcriptional regulator protein; PFAM: Helix-turN-helix
YP_003997432.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR020904:IPR002347; KEGG: dfe:Dfer_1833 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Cyclohexanol dehydrogenase; PFAM: short chain dehydrogenase
YP_003997433.1	KEGG: edi:EDI_248660 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997434.1	InterPro IPR014922; KEGG: gym:GYMC10_5500 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_003997435.1	COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: fjo:Fjoh_4704 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_003997436.1	InterPro IPR000005:IPR018060; KEGG: csc:Csac_2727 helix-turN-helix domaiN-containing protein; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Putative uncharacterized protein
YP_003997437.1	KEGG: cpi:Cpin_3811 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE
YP_003997438.1	KEGG: pan:PODANSg536 hypothetical protein; SPTR: Predicted CDS Pa_3_11100
YP_003997439.1	InterPro IPR019734:IPR013026; KEGG: phe:Phep_1035 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003997440.1	InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_2264 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003997441.1	InterPro IPR013740:IPR017936; KEGG: cpi:Cpin_3163 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Possible thiol:disulfide interchange protein TlpA; PFAM: AhpC/TSA family
YP_003997442.1	InterPro IPR001387; KEGG: fjo:Fjoh_4372 helix-turN-helix domaiN-containing protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: XRE family transcriptional regulator; PFAM: Helix-turN-helix
YP_003997443.1	KEGG: cyp:PCC8801_3064 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997444.1	KEGG: cyp:PCC8801_3065 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997445.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3654 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug
YP_003997446.1	InterPro IPR012932:IPR005074; KEGG: dfe:Dfer_5247 peptidase C39 bacteriocin processing; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; SPTR: Putative uncharacterized protein; PFAM: Peptidase C39 family; Vitamin K epoxide reductase family
YP_003997447.1	KEGG: fjo:Fjoh_4796 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997448.1	COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR005074:IPR003439:IPR017940:IPR017871:IPR 000215:IPR003593; KEGG: phe:Phep_0558 ABC transporter related; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family
YP_003997449.1	KEGG: ngr:NAEGRDRAFT_80577 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997450.1	KEGG: tet:TTHERM_01081630 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997451.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: zpr:ZPR_3982 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase)
YP_003997452.1	InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: IS66 Orf2 like protein
YP_003997453.1	KEGG: afr:AFE_2939 ISAfe4, tranposase orf1; SPTR: Putative uncharacterized protein
YP_003997454.1	KEGG: cth:Cthe_3144 AraC family transcriptional regulator; SPTR: Putative uncharacterized protein
YP_003997455.1	COGs: COG3012 conserved hypothetical protein; KEGG: fba:FIC_01793 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997456.1	COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: fba:FIC_00661 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: Thiol-disulphide dehydrogenase; PFAM: Protein of unknown function, DUF393
YP_003997457.1	KEGG: fba:FIC_01184 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997458.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000073; KEGG: lga:LGAS_1762 alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: Hydrolase, alpha/beta fold family protein; PFAM: alpha/beta hydrolase fold
YP_003997459.1	InterPro IPR013078; KEGG: sth:STH3216 hypothetical protein; PFAM: Phosphoglycerate mutase; SPTR: Putative uncharacterized protein; PFAM: Phosphoglycerate mutase family
YP_003997460.1	InterPro IPR005151; KEGG: fps:FP0609 hypothetical protein; PFAM: peptidase S41; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S41
YP_003997461.1	InterPro IPR000086:IPR020084; KEGG: cpi:Cpin_5229 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003997462.1	InterPro IPR019734; KEGG: dfe:Dfer_1581 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein
YP_003997463.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sli:Slin_6199 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003997464.1	KEGG: bcj:BCAS0499 exported monooxygenase; SPTR: Putative exported monooxygenase
YP_003997465.1	COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR012393:IPR011659:IPR005151; KEGG: sus:Acid_3719 peptidase S41; PFAM: peptidase S41; WD40-like beta Propeller containing protein; SMART: peptidase S41; SPTR: Peptidase S41; PFAM: WD40-like Beta Propeller Repeat; Peptidase family S41
YP_003997466.1	KEGG: dfe:Dfer_2485 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997467.1	InterPro IPR001434; KEGG: coc:Coch_1618 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; TIGRFAM: conserved repeat domain
YP_003997468.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283:IPR000728; KEGG: sli:Slin_5192 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_003997469.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475:IPR005476:IPR013838; KEGG: dfe:Dfer_3509 transketolase central region; PFAM: Transketolase central region; Transketolase domaiN-containing protein; SPTR: Transketolase central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_003997470.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR017936:IPR017937; KEGG: sli:Slin_4487 thioredoxiN-related proteiN-like protein; SPTR: ThioredoxiN-related proteiN-like protein; PFAM: Protein of unknown function, DUF255
YP_003997471.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR017439:IPR002933:IPR010168; KEGG: sli:Slin_4957 amidohydrolase; PFAM: peptidase M20; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_003997472.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR004035:IPR005759; KEGG: chu:CHU_3695 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; PFAM: HhH-GPD family protein; iroN-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iroN-sulfur cluster loop; SPTR: Endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; IroN-sulfur binding domain of endonuclease III; Helix-hairpiN-helix motif; TIGRFAM: endonuclease III
YP_003997473.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR005730; KEGG: dfe:Dfer_1153 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; manually curated; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase
YP_003997474.1	InterPro IPR006153; KEGG: chu:CHU_0626 Na(+)/H(+) exchanger family protein; PFAM: sodium/hydrogen exchanger; SPTR: Na(+)/H(+) exchanger family protein; PFAM: Sodium/hydrogen exchanger family; TC 2.A.36
YP_003997475.1	COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_2786 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase
YP_003997476.1	KEGG: sli:Slin_2904 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997477.1	COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_0288 protein of unknown function DUF1684; PFAM: protein of unknown function DUF1684; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1684)
YP_003997478.1	COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: sli:Slin_0293 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_003997479.1	COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: sli:Slin_0294 PASTA domain containing protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: PASTA domain containing protein; PFAM: PASTA domain
YP_003997480.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dfe:Dfer_2923 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_003997481.1	KEGG: cpi:Cpin_6195 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997482.1	InterPro IPR013078; KEGG: ilo:IL1582 broad specificity phosphatase, PhoE-like; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase family protein; PFAM: Phosphoglycerate mutase family
YP_003997483.1	KEGG: cpb:Cphamn1_1393 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997484.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: phe:Phep_2339 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; TIGRFAM: peroxiredoxin, OsmC subfamily; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily
YP_003997485.1	COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: sli:Slin_6556 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_003997486.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: dfe:Dfer_5755 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_003997487.1	COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668:IPR000644:IPR006667:IPR006669; KEGG: sli:Slin_3299 magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein; SPTR: Magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE)
YP_003997488.1	COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: bth:BT_3527 alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; SPTR: Putative uncharacterized protein; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative
YP_003997489.1	COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_3062 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; PFAM: alpha/beta hydrolase fold
YP_003997490.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: zpr:ZPR_1379 prolyl oligopeptidase family; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Prolyl oligopeptidase family; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003997491.1	KEGG: cpi:Cpin_3583 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997492.1	COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: ant:Arnit_2599 hypothetical protein; PFAM: Protein of unknown function DUF2196; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein
YP_003997493.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterProIPR003439:IPR015854:IPR017871:IPR013838:IPR 003593; KEGG: fps:FP0921 lipoprotein releasing system ATP-binding protein LolD; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Lipoprotein releasing system ATP-binding protein LolD; PFAM: ABC transporter
YP_003997494.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838:IPR017441; KEGG: fps:FP0922 lipoprotein releasing system transmembrane protein LolC; PFAM: protein of unknown function DUF214; SPTR: Lipoprotein releasing system transmembrane protein LolC; PFAM: Predicted permease
YP_003997495.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: fps:FP0923 membrane fusion efflux protein precursor; SPTR: Probable membrane fusion efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; manually curated; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003997496.1	COGs: COG1538 Outer membrane protein; KEGG: dfe:Dfer_4162 outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003997497.1	COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: dfe:Dfer_5012 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_003997498.1	COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: amt:Amet_3510 threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; PFAM: Beta-eliminating lyase
YP_003997499.1	InterPro IPR007139; KEGG: sli:Slin_2892 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349)
YP_003997500.1	COGs: COG0259 Pyridoxamine-phosphate oxidase; InterPro IPR011576:IPR019576:IPR000659:IPR019740; KEGG: cyc:PCC7424_1509 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxine 5'-phosphate oxidase, dimerisatioN-like; pyridoxamine 5'-phosphate oxidase-related FMN-binding; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase
YP_003997501.1	InterPro IPR010664; KEGG: dfe:Dfer_5216 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_003997502.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012795:IPR012796; KEGG: chu:CHU_3018 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_003997503.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR003395:IPR004604; KEGG: sli:Slin_1303 DNA repair protein RecN; PFAM: SMC domain protein; SPTR: DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_003997504.1	KEGG: zpr:ZPR_1577 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997505.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782:IPR017936; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_003997506.1	InterPro IPR009056; KEGG: dfe:Dfer_5206 cytochrome c class I; SPTR: Cytochrome c class I; manually curated; PFAM: Cytochrome c
YP_003997507.1	InterPro IPR010664; KEGG: sli:Slin_1299 protein of unknown function DUF1239; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_003997508.1	KEGG: dfe:Dfer_5204 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997509.1	COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bvg accessory factor; SPTR: Putative transcriptional acitvator, Baf family; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003997510.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_3435 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003997511.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418; KEGG: dfe:Dfer_5055 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; AP endonuclease 2 domain protein; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel
YP_003997512.1	KEGG: gau:GAU_3461 hypothetical membrane protein; SPTR: Hypothetical membrane protein
YP_003997513.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR017970; KEGG: fjo:Fjoh_0433 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TC 2.A.36
YP_003997514.1	COGs: COG2936 acyl esterase; InterPro IPR013736:IPR005674; KEGG: sli:Slin_0314 X-Pro dipeptidyl-peptidase domain protein; PFAM: X-Pro dipeptidyl-peptidase domain protein; SPTR: X-Pro dipeptidyl-peptidase domain protein; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase C-terminal noN-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family
YP_003997515.1	COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: chu:CHU_3561 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like regioN-containing protein; PRIAM: Gluconolactonase; SPTR: Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_003997516.1	COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: dfe:Dfer_3859 fumarylacetoacetate (FAA) hydrolase; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_003997517.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: dfe:Dfer_3655 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003997518.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466:IPR019800; KEGG: sli:Slin_4196 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; beta-lactamase; SPTR: Glycoside hydrolase family 3 domain protein; PFAM: Glycosyl hydrolase family 3 N terminal domain; Beta-lactamase
YP_003997519.1	KEGG: dfe:Dfer_3389 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997520.1	KEGG: sli:Slin_0343 hypothetical protein; SPTR: Lipoprotein, putative; PFAM: DinB family
YP_003997521.1	KEGG: dfe:Dfer_5195 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997522.1	KEGG: brm:Bmur_0975 response regulator receiver protein; SPTR: Putative uncharacterized protein
YP_003997523.1	KEGG: gur:Gura_3881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997524.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006091:IPR006090:IPR006089; KEGG: rbi:RB2501_14189 very long chain acyl-CoA dehydrogenase-related protein; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003997525.1	KEGG: sli:Slin_5160 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003997526.1	KEGG: cme:CMC041C hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997527.1	KEGG: ftm:FTM_1275 hypothetical protein
YP_003997528.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; KEGG: zpr:ZPR_0850 TrkA-N domaiN-containing protein; PFAM: TrkA-N domain protein; SPTR: K+ uptake transporter, KtrA subunit; PFAM: TrkA-N domain
YP_003997529.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: gfo:GFO_2532 V-type sodium ATP synthase subunit J; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: V-type sodium ATP synthase subunit J; PFAM: Cation transport protein
YP_003997530.1	KEGG: dfe:Dfer_3935 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997531.1	KEGG: dfe:Dfer_5061 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997532.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 004358; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997533.1	COGs: COG0491 ZN-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3014 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003997534.1	COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462:IPR004533; KEGG: sli:Slin_3015 CDP-diacylglycerol/serineO-phosphatidyltransfera se; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol/serineO-phosphatidyltransfera se; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_003997535.1	COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: sli:Slin_3016 phosphoribosylformylglycinamidine synthase, PurS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; SPTR: Phosphoribosylformylglycinamidine synthase, PurS protein; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein
YP_003997536.1	InterPro IPR016047; KEGG: dfe:Dfer_3048 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23
YP_003997537.1	KEGG: sli:Slin_5008 GtrA family protein; SPTR: GtrA family protein; PFAM: BioY family; GtrA-like protein
YP_003997538.1	KEGG: fjo:Fjoh_1111 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997539.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002938; KEGG: fjo:Fjoh_1110 tryptophan halogenase; PFAM: monooxygenase FAD-binding; SPTR: Tryptophan halogenase; PFAM: FAD binding domain
YP_003997540.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106; KEGG: fps:FP2287 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase
YP_003997541.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347; KEGG: coc:Coch_1048 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003997542.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR020615:IPR018201; KEGG: fps:FP2284 3-oxoacyl-(acyl-carrier-protein) synthase I; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase I; manually curated; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_003997543.1	InterPro IPR009081; KEGG: fjo:Fjoh_1105 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003997544.1	COGs: COG4261 acyltransferase; InterPro IPR004960; KEGG: fjo:Fjoh_1104 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_003997545.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173:IPR018639; KEGG: coc:Coch_0480 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Protein of unknown function DUF2062; SPTR: Family 2 glycosyl transferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2062); Glycosyl transferase family 2
YP_003997546.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR002123; KEGG: fjo:Fjoh_1078 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Probable bifunctional phospholipid/glycerol acyltransferase and transporter; PFAM: Acyltransferase; MMPL family; TIGRFAM: 1-acyl-sN-glycerol-3-phosphate acyltransferases
YP_003997547.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953:IPR002218; KEGG: fjo:Fjoh_1077 all-trans-retinol 13,14-reductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glucose-inhibited division protein A; PRIAM: All-trans-retinol 13,14-reductase; SPTR: All-trans-retinol 13,14-reductase; PFAM: FAD dependent oxidoreductase
YP_003997548.1	InterPro IPR005079; KEGG: fjo:Fjoh_1076 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_003997549.1	COGs: COG1541 Coenzyme F390 synthetase; KEGG: fjo:Fjoh_1075 phenylacetate--CoA ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate--CoA ligase; PFAM: AMP-binding enzyme
YP_003997550.1	InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997551.1	InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997552.1	KEGG: rbi:RB2501_08140 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997553.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268; KEGG: sli:Slin_3943 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family
YP_003997554.1	KEGG: fps:FP2258 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997555.1	InterPro IPR013114; KEGG: fjo:Fjoh_1081 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ; PFAM: FabA-like domain
YP_003997556.1	KEGG: fjo:Fjoh_1082 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997557.1	KEGG: fjo:Fjoh_1082 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997558.1	InterPro IPR004564; KEGG: fps:FP2262 hypothetical protein; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Putative uncharacterized protein; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_003997559.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: fjo:Fjoh_1086 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Candidate polysaccharide deacetylase; Carbohydrate esterase family 4; PFAM: Polysaccharide deacetylase
YP_003997560.1	InterPro IPR014030; KEGG: fps:FP2264 3-oxoacyl-(acyl-carrier-protein) synthase; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain
YP_003997561.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR018201; KEGG: fjo:Fjoh_1088 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_003997562.1	InterPro IPR009081:IPR006162; KEGG: cat:CA2559_03870 acyl-carrier proteiN-like protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003997563.1	KEGG: fps:FP2268 hypothetical protein; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase
YP_003997564.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: fjo:Fjoh_1093 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_003997565.1	KEGG: fjo:Fjoh_4082 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003997566.1	KEGG: dfe:Dfer_5094 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997567.1	COGs: COG0824 thioesterase; InterPro IPR006683:IPR008272; KEGG: fjo:Fjoh_1094 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_003997568.1	InterPro IPR013525:IPR000412; KEGG: fjo:Fjoh_1095 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter, permease component; PFAM: ABC-2 type transporter
YP_003997569.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: fps:FP2272 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Probable ABC-type transport system, ATPase component; PFAM: ABC transporter
YP_003997570.1	KEGG: fjo:Fjoh_1097 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997571.1	KEGG: fjo:Fjoh_1098 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997572.1	KEGG: fps:FP2277 flexirubiN-type pigment biosynthesis acyl carrier protein DarC1; SPTR: Probable acyl carrier protein involved in flexirubiN-type pigment biosynthesis DarC2
YP_003997573.1	KEGG: fjo:Fjoh_1101 hypothetical protein; SPTR: Possible beta hydroxy acyl ACP dehydratase
YP_003997574.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: fjo:Fjoh_1102 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domaiN-containing protein; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III protein DarB; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YP_003997575.1	KEGG: fjo:Fjoh_1103 hypothetical protein; SPTR: Dialkylrecorsinol condensing enzyme DarA
YP_003997576.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR003593:IPR004504; KEGG: sli:Slin_0506 DNA repair protein RadA; SMART: AAA ATPase; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; TIGRFAM: DNA repair protein RadA
YP_003997577.1	KEGG: sli:Slin_0505 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997578.1	COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: dfe:Dfer_0246 peptidase T2 asparaginase 2; PFAM: peptidase T2 asparaginase 2; PRIAM: Beta-aspartyl-peptidase; SPTR: Peptidase T2 asparaginase 2; PFAM: Asparaginase
YP_003997579.1	KEGG: gfo:GFO_0237 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997580.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874:IPR018509; KEGG: dfe:Dfer_2796 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_003997581.1	InterPro IPR000866:IPR017936; KEGG: dfe:Dfer_3104 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_003997582.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR012003:IPR000023:IPR015912:IPR012828; KEGG: sli:Slin_4275 6-phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_003997583.1	KEGG: dfe:Dfer_0778 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997584.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cpi:Cpin_2628 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003997585.1	KEGG: tpv:TP03_0339 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997586.1	KEGG: cpi:Cpin_2627 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997587.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bsu:BSU34440 penicilliN-binding protein 4*; PFAM: beta-lactamase; SPTR: PenicilliN-binding protein 4*; PFAM: Beta-lactamase; Domain of unknown function (DUF3471)
YP_003997588.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: zpr:ZPR_3132 CrcB-like protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_003997589.1	COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: dfe:Dfer_5069 uroporphyriN-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: UroporphyriN-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: UroporphyriN-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases
YP_003997590.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR006402:IPR005833; KEGG: dfe:Dfer_2943 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003997591.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439:IPR017871:IPR004602; KEGG: dfe:Dfer_3862 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_003997592.1	COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: gfo:GFO_1704 amidohydrolase family protein; PFAM: amidohydrolase 2; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase
YP_003997593.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterProIPR001440:IPR011659:IPR006665:IPR019734:IPR 013026:IPR006664; KEGG: dfe:Dfer_4338 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; Tetratricopeptide repeat; OmpA family
YP_003997594.1	COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: paa:Paes_0127 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_003997595.1	InterPro IPR001387; KEGG: set:SEN1955 phage encoded transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Phage encoded transcriptional regulator; PFAM: Helix-turN-helix
YP_003997596.1	KEGG: cbr:CBG21974 Hypothetical protein CBG21974; SPTR: Putative uncharacterized protein
YP_003997597.1	KEGG: tet:TTHERM_00845760 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997598.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: dfe:Dfer_2645 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA gyrase/topoisomerase IV, subunit A
YP_003997599.1	COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204:IPR018313; KEGG: dfe:Dfer_4732 phosphate transporter; PFAM: phosphate transporter; SPTR: Phosphate transporter; PFAM: Phosphate transporter family
YP_003997600.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383:IPR007197; KEGG: sli:Slin_4986 radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_003997601.1	InterPro IPR001969:IPR001478; KEGG: dfe:Dfer_3870 PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: PDZ/DHR/GLGF domain protein
YP_003997602.1	KEGG: phe:Phep_1848 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997603.1	COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_2888 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase
YP_003997604.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4100 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003997605.1	KEGG: dfe:Dfer_4099 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat
YP_003997606.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005:IPR000759; KEGG: dfe:Dfer_5478 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit
YP_003997607.1	COGs: COG0069 Glutamate synthase domain 2; InterProIPR000583:IPR006982:IPR002932:IPR002489:IPR 017932; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: ferredoxiN-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II
YP_003997608.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sli:Slin_2560 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: CarboN-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase
YP_003997609.1	InterPro IPR019115; KEGG: zpr:ZPR_4165 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_003997610.1	KEGG: zpr:ZPR_4162 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997611.1	KEGG: cko:CKO_03879 maltoporin; SPTR: TetraspaniN-1
YP_003997612.1	KEGG: sto:ST1664 cytochrome b558/566 subunit A; SPTR: Polysaccharide deacetylase
YP_003997613.1	KEGG: cce:Ccel_2338 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997614.1	KEGG: gbe:GbCGDNIH1_0957 glutamine synthetase; SPTR: Glutamine synthetase
YP_003997615.1	KEGG: ctp:CTRG_05980 hypothetical protein; SPTR: LOC394897 protein
YP_003997616.1	KEGG: fsu:Fisuc_2307 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997617.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: fjo:Fjoh_4738 histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003997618.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fjo:Fjoh_4735 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: LuxR family response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003997619.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3052 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative TonB-dependent outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003997620.1	COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: dfe:Dfer_3005 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein; PFAM: NfeD-like
YP_003997621.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: dfe:Dfer_3004 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Band 7 protein; PFAM: SPFH domain / Band 7 family
YP_003997622.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR016228:IPR001986; KEGG: dfe:Dfer_5009 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_003997623.1	KEGG: slp:Slip_0247 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997624.1	COGs: COG0787 Alanine racemase; InterPro IPR013221:IPR001608:IPR011079:IPR000821; KEGG: dfe:Dfer_4988 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: alanine racemase domain protein; Mur ligase middle domain protein; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Mur ligase family, catalytic domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase
YP_003997625.1	COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: sli:Slin_6051 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003997626.1	KEGG: sli:Slin_5033 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997627.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145:IPR006224; KEGG: rbi:RB2501_15789 ribosomal large subunit pseudouridine synthase D; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase
YP_003997628.1	InterPro IPR006016:IPR006015; KEGG: phe:Phep_2459 UspA domain protein; PFAM: UspA domaiN-containing protein; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_003997629.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347; KEGG: sli:Slin_5846 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003997630.1	COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: dfe:Dfer_5011 protein of unknown function DUF502; PFAM: protein of unknown function DUF502; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF502)
YP_003997631.1	KEGG: sli:Slin_0236 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997632.1	KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997633.1	COGs: COG0320 Lipoate synthase; InterPro IPR003698:IPR007197:IPR006638; KEGG: sli:Slin_0446 lipoic acid synthetase; PFAM: Radical SAM domain protein; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase
YP_003997634.1	COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: cpi:Cpin_3691 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase
YP_003997635.1	COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR005810:IPR003781:IPR005811:IPR017440; KEGG: sli:Slin_3229 succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_003997636.1	KEGG: hau:Haur_0370 extracellular solute-binding protein; SPTR: Putative uncharacterized protein
YP_003997637.1	COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR001557:IPR001236:IPR011275; KEGG: dfe:Dfer_4459 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; PRIAM: L-lactate dehydrogenase; SPTR: Malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_003997638.1	COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: dfe:Dfer_4460 protein of unknown function DUF1232; PFAM: protein of unknown function DUF1232; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1232)
YP_003997639.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369:IPR006312:IPR003998; KEGG: dfe:Dfer_4461 twiN-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: TwiN-arginine translocation protein, TatA/E family subunit; TIGRFAM: twiN-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003997640.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120:IPR004412; KEGG: dfe:Dfer_4462 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_003997641.1	InterPro IPR008258:IPR018392:IPR000189:IPR002482; KEGG: dfe:Dfer_4463 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; PeptidoglycaN-binding lysin domain; SMART: PeptidoglycaN-binding LysM; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; LysM domain
YP_003997642.1	COGs: COG0388 amidohydrolase; InterPro IPR014445:IPR003010:IPR003694; KEGG: dfe:Dfer_2832 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; CarboN-nitrogen hydrolase; TIGRFAM: NAD+ synthetase
YP_003997643.1	InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003997644.1	InterPro IPR003728:IPR020790; KEGG: dfe:Dfer_0034 protein of unknown function DUF150; PFAM: protein of unknown function DUF150; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_003997645.1	COGs: COG0195 Transcription elongation factor; InterPro IPR013735:IPR010213; KEGG: dfe:Dfer_0033 transcription elongation factor NusA; PFAM: NusA domaiN-containing protein; SPTR: NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA
YP_003997646.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR006847:IPR000795:IPR004161:IPR000289:IPR 000178:IPR005225; KEGG: dfe:Dfer_0032 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domaiN-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; TranslatioN-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_003997647.1	COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: zpr:ZPR_3768 O-methyltransferase protein; PFAM: O-methyltransferase family 3; SPTR: O-methyltransferase protein; PFAM: O-methyltransferase
YP_003997648.1	InterPro IPR008258:IPR018392:IPR002482; KEGG: sli:Slin_0474 peptidoglycaN-binding lysin domain protein; PFAM: Lytic transglycosylase catalytic; PeptidoglycaN-binding lysin domain; SMART: PeptidoglycaN-binding LysM; SPTR: PeptidoglycaN-binding lysin domain protein; PFAM: Transglycosylase SLT domain; LysM domain
YP_003997649.1	KEGG: sli:Slin_0475 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3109)
YP_003997650.1	COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: rbi:RB2501_08425 6-O-methylguanine DNA methyltransferase family protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: Putative 6-O-methylguanine DNA methyltransferase family protein; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_003997651.1	COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR000485:IPR019888:IPR019885; KEGG: sli:Slin_5348 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: MarR family; AsnC family
YP_003997652.1	InterPro IPR019734:IPR013026; KEGG: sli:Slin_5349 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997653.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: sli:Slin_5350 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_003997654.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: sli:Slin_0799 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_003997655.1	COGs: COG1579 ZN-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sli:Slin_3124 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; PFAM: Putative zinc ribbon domain
YP_003997656.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR001412; KEGG: dfe:Dfer_5147 protein of unknown function DUF34; PFAM: protein of unknown function DUF34; SPTR: Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_003997657.1	COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: pdi:BDI_1735 hypothetical protein; PFAM: protein of unknown function DUF456; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF456)
YP_003997658.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839:IPR001176; KEGG: sli:Slin_1914 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003997659.1	COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR018236; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_003997660.1	KEGG: sli:Slin_2668 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein
YP_003997661.1	InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: von Willebrand factor type A domain
YP_003997662.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dfe:Dfer_5787 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase
YP_003997663.1	COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: sli:Slin_1660 protein of unknown function DUF541; PFAM: protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF541)
YP_003997664.1	COGs: COG3808 Inorganic pyrophosphatase; InterPro IPR004131:IPR006665:IPR006664; KEGG: sli:Slin_0746 V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; OmpA/MotB domain protein; PRIAM: Inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: OmpA family; Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase
YP_003997665.1	COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: bth:BT_4383 sugar kinase; PFAM: YjeF-family domaiN-containing protein; protein of unknown function UPF0031; SPTR: Sugar kinase; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region
YP_003997666.1	KEGG: cac:CA_C0354 hypothetical protein; SPTR: Uncharacterized membrane protein
YP_003997667.1	COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: dfe:Dfer_0220 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase
YP_003997668.1	InterPro IPR011637; KEGG: dfe:Dfer_0221 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX
YP_003997669.1	InterPro IPR011630; KEGG: dfe:Dfer_0222 protein of unknown function DUF1599; PFAM: protein of unknown function DUF1599; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599)
YP_003997670.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR006390; KEGG: fjo:Fjoh_3497 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Putative dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_003997671.1	InterPro IPR003961; KEGG: dfe:Dfer_0264 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_003997672.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: sli:Slin_6524 ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_003997673.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterProIPR004100:IPR000194:IPR000793:IPR020003:IPR 005294; KEGG: dfe:Dfer_4632 ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_003997674.1	KEGG: mpu:MYPU_0260 ABC transporter ATP-binding protein; SPTR: Putative uncharacterized protein
YP_003997675.1	InterPro IPR010496; KEGG: dfe:Dfer_3433 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003997676.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: cja:CJA_2192 hexuronate transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Hexuronate transporter; PFAM: Major Facilitator Superfamily
YP_003997677.1	COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: sli:Slin_1245 KDPG and KHG aldolase; PFAM: KDPG and KHG aldolase; SPTR: KDPG and KHG aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase
YP_003997678.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR001484; KEGG: sli:Slin_1246 PfkB domain protein; PFAM: PfkB domain protein; SPTR: PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_003997679.1	COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: sli:Slin_4786 glucuronate isomerase; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Glucuronate isomerase; PFAM: Glucuronate isomerase
YP_003997680.1	COGs: COG2721 Altronate dehydratase; InterPro IPR013974:IPR007392; KEGG: sli:Slin_4785 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; PRIAM: Altronate dehydratase; SPTR: Altronate dehydratase; PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus
YP_003997681.1	COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013118:IPR000669; KEGG: sli:Slin_1247 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase domain; SPTR: Mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain
YP_003997682.1	KEGG: cpi:Cpin_3965 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997683.1	COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: dfe:Dfer_2841 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88
YP_003997684.1	COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_0486 pectinesterase; SPTR: Pectinesterase; PFAM: alpha/beta hydrolase fold
YP_003997685.1	InterPro IPR012669; KEGG: phe:Phep_1159 pectate lyase; PFAM: Pectic acid lyase; SPTR: Pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family
YP_003997686.1	COGs: COG4677 Pectin methylesterase; InterPro IPR000070:IPR018040; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase
YP_003997687.1	InterPro IPR012910:IPR000531; KEGG: phe:Phep_1153 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003997688.1	InterPro IPR012944; KEGG: phe:Phep_1154 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003997689.1	InterPro IPR003961:IPR001917; KEGG: phe:Phep_1155 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain
YP_003997690.1	COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: ara:Arad_0078 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase protein; PFAM: Ornithine cyclodeaminase/mu-crystallin family
YP_003997691.1	InterPro IPR003347; KEGG: cpi:Cpin_0347 transcription factor jumonji JmjC domain protein; SMART: transcription factor jumonji jmjC domaiN-containing protein; SPTR: Transcription factor jumonji jmjC domain protein
YP_003997692.1	KEGG: dfe:Dfer_4333 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997693.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594:IPR005467; KEGG: dfe:Dfer_0452 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997694.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_0453 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003997695.1	COGs: COG4995 conserved hypothetical protein; KEGG: fjo:Fjoh_1271 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997696.1	KEGG: fjo:Fjoh_1276 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997697.1	InterPro IPR014284; KEGG: sli:Slin_1208 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003997698.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665:IPR006664; KEGG: dfe:Dfer_1794 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_003997699.1	KEGG: ote:Oter_4064 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997700.1	KEGG: pbe:PB000112.03.0 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997701.1	KEGG: sul:SYO3AOP1_1305 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; SPTR: Aconitate hydratase 2
YP_003997702.1	COGs: COG5434 Endopygalactorunase; InterPro IPR001087:IPR000743:IPR006626; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family; PFAM: glycoside hydrolase family 28; lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase
YP_003997703.1	COGs: COG3717 5-keto 4-deoxyuronate isomerase; InterPro IPR021120:IPR007045:IPR001412; KEGG: dfe:Dfer_2839 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase; PFAM: KduI/IolB family
YP_003997704.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347:IPR020904; KEGG: sli:Slin_3404 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase
YP_003997706.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2837 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003997707.1	COGs: COG3033 Tryptophanase; InterPro IPR001597:IPR011166; KEGG: sli:Slin_0829 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Tryptophanase; SPTR: Tryptophanase; PFAM: Beta-eliminating lyase
YP_003997708.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR000005:IPR020449:IPR018060; KEGG: sli:Slin_4331 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003997709.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863:IPR001431; KEGG: fjo:Fjoh_2253 peptidase M16 domaiN-containing protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase family M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003997710.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: phe:Phep_4211 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003997711.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR020058:IPR020059:IPR020060:IPR001412:IPR 004514; KEGG: dfe:Dfer_2503 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_003997712.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_0629 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003997714.1	COGs: COG1162 GTPase; InterPro IPR004881:IPR010914; KEGG: dfe:Dfer_3198 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: Ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_003997715.1	KEGG: pgn:PGN_1301 probable transcriptional regulator; SPTR: MerR family transcriptional regulator protein
YP_003997716.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sli:Slin_2383 DNA protecting protein DprA; PFAM: SMF family protein; SPTR: DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombinatioN-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_003997717.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR006935:IPR001650:IPR001943:IPR014001:IPR 004807:IPR014021; KEGG: dfe:Dfer_4654 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_003997718.1	KEGG: sli:Slin_1064 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997719.1	KEGG: olu:OSTLU_4881 predicted protein; SPTR: Predicted protein
YP_003997720.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2685 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003997721.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137:IPR018357; KEGG: rbi:RB2501_15194 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_003997722.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463:IPR013114:IPR010084; KEGG: dfe:Dfer_3015 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: UDP-3-0-acyl N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_003997723.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020573:IPR001451:IPR007691; KEGG: sli:Slin_6493 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, noN-repeat region; transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_003997724.1	COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674:IPR003607; KEGG: chu:CHU_1039 HC superfamily phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Phosphohydrolase, HC superfamily; PFAM: HD domain
YP_003997725.1	COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR016286; KEGG: phe:Phep_2605 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Alpha-L-fucosidase; PFAM: Alpha-L-fucosidase
YP_003997726.1	COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: dfe:Dfer_2594 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; PFAM: peptidase T2 asparaginase 2; PRIAM:N(4)-(beta-N-acetylglucosaminyl)-L-asparagina se; SPTR:N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginas e; PFAM: Asparaginase
YP_003997727.1	KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997728.1	COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886:IPR007698; KEGG: dfe:Dfer_4962 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: Alanine dehydrogenase; manually curated; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase
YP_003997729.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sli:Slin_2993 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_003997730.1	InterPro IPR012910; KEGG: bvu:BVU_2749 OmpA-related protein; PFAM: TonB-dependent receptor plug; SPTR: OmpA family Oar family outer membrane protein protein
YP_003997731.1	COGs: COG0696 Phosphoglyceromutase; InterPro IPR011258:IPR006124:IPR005995; KEGG: dfe:Dfer_4375 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_003997732.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: cno:NT01CX_1554 alginate O-acetylation protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Alginate O-acetylation protein; PFAM: MBOAT family
YP_003997733.1	KEGG: bfr:BF3279 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997734.1	KEGG: syn:sll0641 hypothetical protein; SPTR: Sll0641 protein
YP_003997735.1	KEGG: dfe:Dfer_3355 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997736.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: dfe:Dfer_2405 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003997737.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212:IPR014016:IPR014017; KEGG: sli:Slin_5601 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003997738.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_5546 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003997739.1	KEGG: sli:Slin_5547 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997740.1	COGs: COG0194 Guanylate kinase; InterPro IPR008144:IPR008145:IPR017665; KEGG: sli:Slin_5548 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_003997741.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004820:IPR005248:IPR004821; KEGG: dfe:Dfer_3826 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_003997742.1	COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: sli:Slin_6393 transcriptional acitvator, Baf family; PFAM: Bvg accessory factor; SPTR: Putative transcriptional acitvator, Baf family; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003997743.1	InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_003997744.1	InterPro IPR002677; KEGG: dfe:Dfer_4153 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_003997745.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR003664:IPR012281; KEGG: sli:Slin_5249 fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_003997746.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747:IPR004655; KEGG: dfe:Dfer_4151 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domaiN-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-(Acyl carrier protein) synthase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_003997747.1	KEGG: ava:Ava_2635 O-succinylbenzoate synthase; SPTR: O-succinylbenzoic acid synthase
YP_003997748.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR013185:IPR001059:IPR015365:IPR020599:IPR 013852:IPR011768; KEGG: aas:Aasi_0714 hypothetical protein; PFAM: Elongation factor P; Elongation factor KOW-like domaiN-containing protein; Elongation factor P/YeiP protein; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_003997749.1	COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR000089:IPR001249; KEGG: dfe:Dfer_4149 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domaiN-containing protein; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: BiotiN-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_003997750.1	COGs: COG0439 Biotin carboxylase; InterProIPR005481:IPR005479:IPR005482:IPR011761:IPR 011764:IPR004549; KEGG: sli:Slin_5245 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_003997751.1	KEGG: coc:Coch_2036 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2853)
YP_003997752.1	KEGG: sli:Slin_2429 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997753.1	KEGG: dfe:Dfer_4803 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997754.1	COGs: COG1109 Phosphomannomutase; InterProIPR005844:IPR005845:IPR005846:IPR005841:IPR 016066; KEGG: dfe:Dfer_4939 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; SPTR: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_003997755.1	InterPro IPR007409; KEGG: coc:Coch_0461 protein of unknown function DUF450; PFAM: protein of unknown function DUF450; SPTR: Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)
YP_003997756.1	COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845:IPR010944; KEGG: dfe:Dfer_2420 AMP nucleosidase; PFAM: purine or other phosphorylase family 1; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase, putative
YP_003997757.1	InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_0369 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat
YP_003997758.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104:IPR006162:IPR011932; KEGG: sli:Slin_2436 tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD
YP_003997759.1	InterPro IPR003718; KEGG: sli:Slin_0444 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; PFAM: OsmC-like protein
YP_003997760.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994:IPR001714:IPR001131; KEGG: dfe:Dfer_2876 peptidase M24; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; SPTR: Peptidase M24; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24
YP_003997761.1	InterPro IPR010846; KEGG: dfe:Dfer_2759 protein of unknown function DUF1460; PFAM: protein of unknown function DUF1460; SPTR: Putative xylanase; PFAM: Protein of unknown function (DUF1460)
YP_003997762.1	COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR000485:IPR019888:IPR019885; KEGG: dfe:Dfer_5148 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: HTH domain; AsnC family
YP_003997763.1	COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883:IPR001540; KEGG: sli:Slin_2031 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2
YP_003997764.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR000422:IPR000926:IPR016299; KEGG: dfe:Dfer_4002 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_003997765.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: phe:Phep_2133 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: Putative SpoU rRNA methylase family protein; PFAM: SpoU rRNA Methylase family
YP_003997766.1	InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303)
YP_003997767.1	COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterPro IPR002319:IPR006195:IPR004529; KEGG: dfe:Dfer_4769 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_003997768.1	COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: sli:Slin_4461 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; SPTR: Peptidase M15D vanX D-ala-D-ala dipeptidase; PFAM: D-ala-D-ala dipeptidase
YP_003997769.1	COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642:IPR011415; KEGG: sli:Slin_4460 nucleoside recognition domain protein; PFAM: nucleoside recognition domain protein; SPTR: Nucleoside recognition domain protein; PFAM: Nucleoside recognition
YP_003997770.1	COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148:IPR015945:IPR008909:IPR001412:IPR 001278; KEGG: dfe:Dfer_2678 arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain protein; Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_003997771.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551:IPR005229; KEGG: dfe:Dfer_0417 hypothetical protein; PFAM: YicC-like domaiN-containing protein; domain of unknown function DUF1732; SPTR: Putative uncharacterized protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_003997772.1	KEGG: sli:Slin_1460 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997773.1	KEGG: fjo:Fjoh_2970 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997774.1	KEGG: fjo:Fjoh_2971 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997775.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR004358:IPR005467; KEGG: gfo:GFO_2118 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Two-component sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003997776.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_6821 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003997777.1	COGs: COG1522 Transcriptional regulators; InterProIPR006199:IPR019887:IPR000485:IPR019888:IPR 019885; KEGG: chu:CHU_3319 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; LexA DNA-binding domain protein; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: MarR family; AsnC family
YP_003997778.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: sli:Slin_5956 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_003997779.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866:IPR017936; KEGG: cpi:Cpin_4550 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol-disulfide isomerase and thioredoxin; PFAM: AhpC/TSA family
YP_003997780.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterPro IPR006075:IPR018027:IPR017958:IPR004413; KEGG: sli:Slin_5958 glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_003997781.1	InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: gliding motility associated protien GldN; TIGRFAM: gliding motility associated protien GldN
YP_003997782.1	InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM
YP_003997783.1	InterPro IPR019852; KEGG: sli:Slin_3224 gliding motility-associated protein GldL; SPTR: Gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL
YP_003997784.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: sli:Slin_3225 protein of unknown function DUF323; PFAM: protein of unknown function DUF323; SPTR: Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK
YP_003997785.1	InterPro IPR019861; KEGG: dfe:Dfer_2914 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_003997786.1	COGs: COG1587 UroporphyrinogeN-III synthase; InterPro IPR003754; KEGG: sli:Slin_3227 uroporphyrinogen III synthase HEM4; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Possible uroporphyrinogeN-III synthase; PFAM: UroporphyrinogeN-III synthase HemD
YP_003997787.1	KEGG: sli:Slin_3228 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997788.1	KEGG: cpi:Cpin_0536 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997790.1	COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; TIGRFAM: trehalose synthase-fused probable maltokinase
YP_003997791.1	KEGG: dfe:Dfer_4012 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997792.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_4011 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003997793.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: sli:Slin_5610 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997794.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145:IPR006224; KEGG: sli:Slin_6555 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_003997795.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_003997796.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033:IPR019822; KEGG: sli:Slin_4969 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_003997797.1	COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: dfe:Dfer_3814 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_003997798.1	KEGG: dfe:Dfer_1527 group-specific protein; SPTR: Group-specific protein
YP_003997799.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: dps:DP0533 MCBG protein (microcin resistance protein); PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies)
YP_003997800.1	InterPro IPR011701; KEGG: pdi:BDI_0459 macrolide efflux pump; PFAM: major facilitator superfamily MFS_1; SPTR: Macrolide efflux pump; PFAM: Major Facilitator Superfamily
YP_003997801.1	KEGG: sli:Slin_1525 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997802.1	COGs: COG0744 Membrane carboxypeptidase (penicilliN-binding protein); InterPro IPR001264:IPR011812; KEGG: sli:Slin_2842 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase
YP_003997803.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: dfe:Dfer_2575 cysteine desulfurase activator complex subunit SufB; PFAM: SufBD protein; SPTR: FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_003997804.1	KEGG: cpi:Cpin_5364 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997805.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: dfe:Dfer_2572 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_003997806.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dfe:Dfer_2573 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: Putative 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_003997807.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: zpr:ZPR_4346 multidrug resistance protein, AcrA/AcrE family protein; PFAM: secretion protein HlyD family protein; SPTR: Multidrug resistance protein, AcrA/AcrE family; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003997808.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: zpr:ZPR_4345 multidrug resistance protein, AcrB/AcrD family protein; PFAM: acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003997809.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: zpr:ZPR_4344 multidrug resistance protein, FusA/NodT family protein; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003997810.1	KEGG: sli:Slin_1861 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Mannosyl oligosaccharide glucosidase
YP_003997811.1	COGs: COG0340 BiotiN-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: sli:Slin_3003 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotiN-[acetyl-CoA-carboxylase] ligase region
YP_003997812.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dfe:Dfer_5041 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_003997813.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR003959:IPR000642:IPR003593:IPR003960:IPR 005936; KEGG: sli:Slin_3001 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003997814.1	InterPro IPR008902; KEGG: pdi:BDI_1319 glycoside hydrolase family protein; PFAM: alpha-L-rhamnosidase; SPTR: Glycoside hydrolase family 78; PFAM: Bacterial alpha-L-rhamnosidase
YP_003997815.1	InterPro IPR013737:IPR008902:IPR016007; KEGG: bth:BT_2524 alpha-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain
YP_003997816.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR007695:IPR007860:IPR007696:IPR007861:IPR 000432:IPR005748; KEGG: dfe:Dfer_2983 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_003997817.1	InterPro IPR004360:IPR017515; KEGG: fjo:Fjoh_0659 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_003997818.1	COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: cyp:PCC8801_0042 polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein
YP_003997819.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_3238 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_003997820.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: geo:Geob_1452 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003997821.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616:IPR020617:IPR002155:IPR020613; KEGG: afn:Acfer_0375 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; SPTR: Putative uncharacterized protein; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003997822.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: afn:Acfer_0376 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-binding enzyme; PFAM: AMP-binding enzyme
YP_003997823.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pdi:BDI_3708 vitamin B12 receptor precursor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003997824.1	KEGG: mif:Metin_0445 V-type ATPase 116 kDa subunit; SPTR: V-type ATPase 116 kDa subunit
YP_003997825.1	KEGG: tet:TTHERM_01111060 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997826.1	InterPro IPR009056:IPR013427; KEGG: dfe:Dfer_1034 heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: heme-binding protein; PFAM: Cytochrome c; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type
YP_003997827.1	COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: sli:Slin_3461 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel
YP_003997828.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR017909:IPR006311; KEGG: bth:BT_3470 dehydrogenase; PFAM: oxidoreductase domain protein; SPTR: Putative uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003997829.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR001986:IPR005750; KEGG: sli:Slin_6517 UDP-N-acetylglucosamine1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR:UDP-N-acetylglucosamine1-carboxyvinyltransfera se; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_003997830.1	KEGG: dfe:Dfer_4253 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997831.1	KEGG: sli:Slin_0377 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997832.1	COGs: COG1649 conserved hypothetical protein; InterPro IPR003790; KEGG: dfe:Dfer_3734 protein of unknown function DUF187; PFAM: protein of unknown function DUF187; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised BCR, COG1649
YP_003997833.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR004365:IPR004364:IPR018149:IPR002313:IPR 006195; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and noN-spirochete bacterial
YP_003997834.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sli:Slin_1479 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: Possible dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family
YP_003997835.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_4272 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_003997836.1	COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: dfe:Dfer_4273 hydroxyproline-2-epimerase; PFAM: proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase; PFAM: Proline racemase
YP_003997837.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: dfe:Dfer_4274 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003997838.1	COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: dfe:Dfer_1442 protein of unknown function DUF885; PFAM: protein of unknown function DUF885; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF885)
YP_003997839.1	InterPro IPR001440:IPR019734:IPR013026; KEGG: chu:CHU_0003 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat containing protein; PFAM: Tetratricopeptide repeat
YP_003997840.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2955 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003997841.1	InterPro IPR007372; KEGG: cpi:Cpin_5670 YceI family protein; PFAM: YceI family protein; SPTR: YCE I like family protein; PFAM: YceI-like domain
YP_003997842.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106:IPR005921; KEGG: cpi:Cpin_2006 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase
YP_003997843.1	COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: cpi:Cpin_2007 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: urocanate hydratase; PFAM: Urocanase; TIGRFAM: urocanate hydratase
YP_003997844.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680:IPR005920; KEGG: gfo:GFO_0758 imidazolonepropionase; PFAM: amidohydrolase; SPTR: Imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase
YP_003997845.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: phe:Phep_4273 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family
YP_003997846.1	COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048:IPR019949; KEGG: fjo:Fjoh_1983 luciferase family protein; PFAM: Luciferase-like, subgroup; SPTR: Flavine monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1
YP_003997847.1	InterPro IPR002114; KEGG: cja:CJA_2497 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997848.1	COGs: COG0730 permease; InterPro IPR002781; KEGG: dfe:Dfer_2611 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_003997849.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dfe:Dfer_1518 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003997850.1	COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117:IPR006067:IPR007842; KEGG: phe:Phep_3092 nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; HEPN domain protein; PRIAM: FerredoxiN--nitrite reductase; SPTR: Sulfite reductase (NADPH); PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxiN-like half domain
YP_003997851.1	COGs: COG0007 UroporphyrinogeN-III methylase; InterPro IPR000878:IPR003043:IPR006366; KEGG: phe:Phep_3091 uroporphyriN-III C-methyltransferase; PFAM: UroporphyriN-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: UroporphyrinogeN-III C-methyltransferase; TIGRFAM: uroporphyriN-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyriN-III C-methyltransferase
YP_003997852.1	COGs: COG1648 Siroheme synthase (precorriN-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: phe:Phep_3090 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: siroheme synthase; TIGRFAM: siroheme synthase, N-terminal domain
YP_003997853.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR004511:IPR011798; KEGG: phe:Phep_3089 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Phosphoadenylyl-sulfate reductase (Thioredoxin); TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: thioredoxiN-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin)
YP_003997854.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR011784; KEGG: phe:Phep_3088 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase; SPTR: Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfate adenylyltransferase, small subunit
YP_003997855.1	COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR000795:IPR005225:IPR011779; KEGG: phe:Phep_3087 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain
YP_003997856.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: sli:Slin_5024 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997857.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_1111 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003997858.1	COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: dfe:Dfer_1110 adenylate/guanylate cyclase; PFAM: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain
YP_003997859.1	COGs: COG4993 Glucose dehydrogenase; InterProIPR019551:IPR002372:IPR019556:IPR003088:IPR 018391:IPR009056; KEGG: sli:Slin_2450 PQQ-dependent enzyme-like protein; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; cytochrome c class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: PQQ-dependent enzyme-like protein; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat
YP_003997860.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003997861.1	COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: phe:Phep_0630 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_003997862.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011261:IPR011262:IPR011260:IPR011263:IPR 011773; KEGG: sli:Slin_5760 DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_003997863.1	COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_003997864.1	COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR018102:IPR019981; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_003997865.1	COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR018269:IPR019980; KEGG: sli:Slin_5763 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_003997866.1	InterPro IPR000473; KEGG: dfe:Dfer_4366 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_003997867.1	COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR004368; KEGG: sli:Slin_5765 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_003997868.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR001714:IPR002467; KEGG: sli:Slin_5766 methionine aminopeptidase, type I; PFAM: peptidase M24; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_003997869.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208:IPR019825; KEGG: dfe:Dfer_4363 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_003997870.1	COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: dfe:Dfer_4362 ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_003997871.1	COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996:IPR010916:IPR018038; KEGG: coc:Coch_1165 ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_003997872.1	COGs: COG0098 Ribosomal protein S5; InterPro IPR013810:IPR005324:IPR018192:IPR005712; KEGG: chu:CHU_3145 30S ribosomal protein S5; PFAM: Ribosomal protein S5; ribosomal protein S5 domain protein; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_003997873.1	COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: dfe:Dfer_4359 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_003997874.1	COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906:IPR000702; KEGG: phe:Phep_0617 ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_003997875.1	COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: Ribosomal protein S8
YP_003997876.1	COGs: COG0199 Ribosomal protein S14; InterPro IPR001209; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: Ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e
YP_003997877.1	COGs: COG0094 Ribosomal protein L5; InterPro IPR002132:IPR020929; KEGG: dfe:Dfer_4355 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_003997878.1	COGs: COG0198 Ribosomal protein L24; InterPro IPR005824:IPR005825:IPR003256; KEGG: dfe:Dfer_4354 ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_003997879.1	COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR019972:IPR005745; KEGG: sli:Slin_5777 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_003997880.1	COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019979:IPR019984; KEGG: cpi:Cpin_1624 ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_003997881.1	InterPro IPR001854:IPR018254; KEGG: sli:Slin_5779 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_003997882.1	COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR016180:IPR000114:IPR020798; KEGG: sli:Slin_5780 ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_003997883.1	COGs: COG0092 Ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR004087:IPR 018280:IPR005704; KEGG: sli:Slin_5781 ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_003997884.1	COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: sli:Slin_5782 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_003997885.1	COGs: COG0185 Ribosomal protein S19; InterPro IPR002222:IPR020934:IPR005732; KEGG: sli:Slin_5783 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_003997886.1	COGs: COG0090 Ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: sli:Slin_5784 ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_003997887.1	COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: sli:Slin_5785 ribosomal protein L25/L23; PFAM: Ribosomal protein L25/L23; SPTR: Ribosomal protein L25/L23; PFAM: Ribosomal protein L23
YP_003997888.1	COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: dfe:Dfer_4344 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family
YP_003997889.1	COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR019926:IPR019927; KEGG: dfe:Dfer_4343 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_003997891.1	COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ttu:TERTU_3398 xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: Xylanase; PFAM: Glycosyl hydrolase family 10
YP_003997892.1	InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP family containing protein; SPTR: NIPSNAP family containing protein; PFAM: NIPSNAP
YP_003997893.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5309 amidohydrolase; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family
YP_003997894.1	COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: phe:Phep_4242 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003997895.1	InterPro IPR000073; KEGG: zpr:ZPR_1491 protein containing alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_003997896.1	KEGG: fps:FP0912 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997897.1	COGs: COG3877 conserved hypothetical protein; InterPro IPR018658; KEGG: fps:FP0913 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function(DUF2089)
YP_003997898.1	InterPro IPR000866:IPR017936; KEGG: chu:CHU_1976 thiol-disulfide isomerase or thioredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol-disulfide isomerase or thioredoxin; PFAM: AhpC/TSA family
YP_003997899.1	InterPro IPR000866:IPR017937:IPR017936; KEGG: chu:CHU_1975 thioredoxiN-like protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: ThioredoxiN-like protein; PFAM: AhpC/TSA family
YP_003997900.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991:IPR018107; KEGG: dfe:Dfer_3533 sodium:dicarboxylate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter family
YP_003997901.1	COGs: COG1760 L-serine deaminase; InterPro IPR005131:IPR005130:IPR004644; KEGG: gvi:glr2358 L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iroN-sulfur-dependent, single chain form
YP_003997902.1	KEGG: fba:FIC_01011 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997903.1	InterPro IPR005829; KEGG: fjo:Fjoh_1409 major facilitator transporter; SPTR: Major facilitator transporter; PFAM: Sugar (and other) transporter
YP_003997904.1	COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR011701; KEGG: sli:Slin_2251 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Vacuole effluxer Atg22 like
YP_003997905.1	InterPro IPR001296; KEGG: sli:Slin_6404 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_003997906.1	COGs: COG4627 conserved hypothetical protein; InterPro IPR013216; KEGG: cpi:Cpin_2283 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain
YP_003997907.1	KEGG: dfe:Dfer_5098 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997908.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: dfe:Dfer_4684 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family
YP_003997909.1	COGs: COG0486 GTPase; InterPro IPR018948:IPR002917:IPR004520:IPR005225; KEGG: dfe:Dfer_0089 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE
YP_003997910.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003997911.1	KEGG: ddf:DEFDS_0891 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997912.1	COGs: COG2253 conserved hypothetical protein; InterPro IPR014942; KEGG: pru:PRU_1547 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003997913.1	KEGG: rbi:RB2501_07125 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997914.1	COGs: COG1401 GTPase subunit of restriction endonuclease; InterPro IPR011704; KEGG: reh:H16_A0008 5-methylcytosine-specific restriction protein B; PFAM: ATPase associated with various cellular activities AAA_5; SPTR: 5-Methylcytosine-specific restriction enzyme B; PFAM: AAA domain (dyneiN-related subfamily)
YP_003997915.1	COGs: COG4268 McrBC 5-methylcytosine restriction system component; InterPro IPR019292; KEGG: cpi:Cpin_3470 McrBC 5-methylcytosine restriction system component-like protein; PFAM: 5-methylcytosine restriction system component-like protein; SPTR: McrBC 5-methylcytosine restriction system component-like protein; PFAM: McrBC 5-methylcytosine restriction system component
YP_003997916.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: gfo:GFO_0741 two-component system sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase
YP_003997917.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: gfo:GFO_0740 two-component response transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two-component system response regulator containing LytTR DNA-binding domain; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003997918.1	InterPro IPR005079; KEGG: rha:RHA1_ro08324 6-aminopenicillanic-acid-acyltransferase; PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: Probable 6-aminopenicillanic-acid-acyltransferase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_003997919.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: tcx:Tcr_1072 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003997920.1	KEGG: cth:Cthe_1267 two component LuxR family transcriptional regulator; SPTR: Two component transcriptional regulator, LuxR family
YP_003997921.1	KEGG: cpi:Cpin_4528 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Alginate lyase
YP_003997922.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR011110:IPR011123:IPR003661:IPR003594:IPR 001789:IPR000005:IPR004358:IPR018060:IPR018062:IPR005829:I PR005467; KEGG: phe:Phep_0783 ATP-binding region ATPase domain protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; histidine kinase A domain protein; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: ATP-binding region ATPase domain protein; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Two component regulator propeller; Bacterial regulatory protein, Fis family; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003997923.1	InterPro IPR010905; KEGG: phe:Phep_2694 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88
YP_003997924.1	KEGG: ang:An05g00390 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997925.1	InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003997926.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: phe:Phep_2722 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003997927.1	KEGG: sca:Sca_1918 amino acid permease; SPTR: Putative amino acid permease
YP_003997928.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: fba:FIC_01203 bifunctional deaminase-reductase domain protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: Dihydrofolate reductase family protein; PFAM: RibD C-terminal domain
YP_003997929.1	KEGG: pub:SAR11_0240 malate dehydrogenase; SPTR: Malate dehydrogenase
YP_003997930.1	KEGG: sli:Slin_3992 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997931.1	InterPro IPR012910:IPR000531; KEGG: sli:Slin_4238 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003997932.1	COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: fjo:Fjoh_3365 hypothetical protein; PFAM: protein of unknown function DUF892; SPTR: Protein of hypothetical function DUF892; PFAM: Domain of unknown function (DUF892)
YP_003997933.1	InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003997934.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: fjo:Fjoh_3965 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003997935.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003997936.1	COGs: COG0753 Catalase; InterPro IPR018028:IPR010582:IPR002226:IPR011614; KEGG: cpi:Cpin_2389 catalase; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Catalase; PFAM: Catalase; Catalase-related immune-responsive
YP_003997937.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_0136 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_003997938.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR006402:IPR006439; KEGG: fba:FIC_02264 predicted phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Possible beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003997939.1	KEGG: cro:ROD_40361 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3748)
YP_003997940.1	COGs: COG4692 neuraminidase (sialidase); KEGG: rba:RB8501 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BNR/Asp-box repeat
YP_003997941.1	KEGG: bcv:Bcav_1513 periplasmic protein; SPTR: Putative periplasmic protein
YP_003997942.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sli:Slin_6589 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase family
YP_003997943.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR019900; KEGG: phe:Phep_2815 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_003997944.1	InterPro IPR014984; KEGG: cpi:Cpin_2089 HopJ type III effector protein; PFAM: HopJ type III effector protein; SPTR: Type III effector HopPmaJ; PFAM: HopJ type III effector protein
YP_003997945.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR003594:IPR013507:IPR014790:IPR014762:IPR 020667:IPR014763; KEGG: dfe:Dfer_3811 DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_003997946.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: phe:Phep_0482 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Transmembrane rhomboid family protein; PFAM: Rhomboid family
YP_003997947.1	InterPro IPR002610; KEGG: dfe:Dfer_3809 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_003997948.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR005475:IPR005476:IPR005474:IPR020826:IPR 005477; KEGG: dfe:Dfer_3808 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domaiN-containing protein; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_003997949.1	COGs: COG3910 ATPase; InterPro IPR003593:IPR018184; KEGG: hau:Haur_4729 AAA ATPase; SMART: AAA ATPase; SPTR: Putative uncharacterized protein
YP_003997950.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_6458 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003997951.1	COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR013108:IPR012855; KEGG: gau:GAU_2343 D-aminoacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: D-aminoacylase (Aspartate, glutamate etc); PFAM: D-aminoacylase, C-terminal region; Amidohydrolase family
YP_003997952.1	KEGG: brm:Bmur_0975 response regulator receiver protein; SPTR: Putative uncharacterized protein
YP_003997953.1	KEGG: gur:Gura_3881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997954.1	COGs: COG1418 HD superfamily hydrolase; InterProIPR004087:IPR003607:IPR017705:IPR006675:IPR 018111:IPR006674:IPR004088; KEGG: dfe:Dfer_0007 phosphodiesterase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: RNA binding metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_003997955.1	KEGG: pgn:PGN_1562 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997956.1	KEGG: ptm:GSPATT00018858001 hypothetical protein; SPTR: M-like protein
YP_003997957.1	COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: sli:Slin_0287 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domaiN-containing protein; tRNA synthetase B5; ferredoxiN-fold anticodoN-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; FerredoxiN-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, noN-spirochete bacterial
YP_003997958.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: cpi:Cpin_1835 transcriptional repressor, CopY family; PFAM: Penicillinase repressor; SPTR: Putative uncharacterized protein; manually curated; PFAM: Penicillinase repressor
YP_003997959.1	InterPro IPR008756; KEGG: cpi:Cpin_1836 peptidase M56 BlaR1; PFAM: peptidase M56 BlaR1; SPTR: TonB family protein; PFAM: BlaR1 peptidase M56
YP_003997960.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: phe:Phep_2588 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Acylaminoacyl-peptidase; PFAM: Prolyl oligopeptidase family
YP_003997961.1	KEGG: cpi:Cpin_6309 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3037)
YP_003997962.1	KEGG: fjo:Fjoh_2564 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997963.1	COGs: COG0498 Threonine synthase; InterPro IPR000634:IPR004450:IPR001926; KEGG: dfe:Dfer_3806 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_003997964.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR001317:IPR011702:IPR006220:IPR006274:IPR 002474:IPR000991:IPR017926; KEGG: dfe:Dfer_4372 carbamoyl phosphate synthase small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_003997965.1	InterPro IPR006015:IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA domaiN-containing protein; SPTR: UspA domain protein; PFAM: Universal stress protein family
YP_003997966.1	COGs: COG4290 Guanyl-specific ribonuclease Sa; InterPro IPR000026; KEGG: tpr:Tpau_0946 guanine-specific ribonuclease N1 and T1; PFAM: guanine-specific ribonuclease N1 and T1; SPTR: Probable guanyl-specific ribonuclease; PFAM: ribonuclease
YP_003997967.1	InterPro IPR000468; KEGG: dfe:Dfer_3697 barstar (barnase inhibitor); PFAM: Barstar (barnase inhibitor); SPTR: Barstar (Barnase inhibitor); PFAM: Barstar (barnase inhibitor)
YP_003997968.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: gfo:GFO_0974 biotin carboxyl carrier protein of acyl-CoA carboxylase; PFAM: biotin/lipoyl attachment domaiN-containing protein; SPTR: Biotin carboxyl carrier protein of acyl-CoA carboxylase; PFAM: BiotiN-requiring enzyme
YP_003997969.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; KEGG: mkm:Mkms_3184 methylmalonyl-CoA mutase, beta subunit; SPTR: Methylmalonyl-CoA mutase, small subunit; PFAM: Methylmalonyl-CoA mutase
YP_003997970.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR005479:IPR004549:IPR005481:IPR005482:IPR 011761:IPR011764; KEGG: zpr:ZPR_1998 biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; manually curated; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_003997971.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR006159:IPR006099:IPR006158; KEGG: sli:Slin_6640 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_003997972.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: phe:Phep_0639 carboxyl transferase; PFAM: carboxyl transferase; SPTR: Propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase domain
YP_003997973.1	COGs: COG2378 transcriptional regulator protein; InterPro IPR001034; KEGG: fjo:Fjoh_0788 helix-turN-helix, type 11 domaiN-containing protein; SMART: regulatory protein DeoR; SPTR: Helix-turN-helix, type 11 domain protein; PFAM: HTH domain
YP_003997974.1	InterPro IPR007837; KEGG: fjo:Fjoh_0790 DinB family protein; PFAM: DinB family protein; SPTR: Putative uncharacterized protein; PFAM: DinB family
YP_003997975.1	COGs: COG1018 Flavodoxin reductase (ferredoxiN-NADPH reductase) family 1; InterProIPR006058:IPR001709:IPR001221:IPR008333:IPR 001433:IPR001041:IPR017927; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: 2Fe-2S iroN-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_003997976.1	InterPro IPR000601:IPR019775:IPR001434; KEGG: sli:Slin_3586 conserved repeat domain protein; PFAM: protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: conserved repeat domain protein; TIGRFAM: conserved repeat domain
YP_003997977.1	KEGG: sli:Slin_0179 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997978.1	COGs: COG0738 Fucose permease; InterPro IPR005275:IPR011701; KEGG: phe:Phep_2750 L-fucose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: L-fucose transporter; TIGRFAM: L-fucose transporter; manually curated; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease
YP_003997979.1	InterPro IPR008000; KEGG: cpi:Cpin_1991 protein of unknown function DUF718; PFAM: protein of unknown function DUF718; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718)
YP_003997980.1	KEGG: cat:CA2559_05490 hypothetical protein; SPTR: Multiple ligand-binding protein 1, putative
YP_003997981.1	InterPro IPR001818; KEGG: tmz:Tmz1t_2978 peptidase domain protein; PFAM: peptidase M10A and M12B matrixin and adamalysin; SPTR: Peptidase domain protein
YP_003997982.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: sli:Slin_4081 methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_003997983.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016303:IPR016037:IPR002658; KEGG: sli:Slin_3473 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_003997984.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: zpr:ZPR_0968 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: Two-component system sensor histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003997985.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: cpi:Cpin_0780 sulphate transporter; PFAM: sulphate transporter; SPTR: Possible integral membrane sulfate transportor; PFAM: Sulfate transporter family
YP_003997986.1	COGs: COG0288 Carbonic anhydrase; InterPro IPR000896:IPR015892:IPR001765; KEGG: fjo:Fjoh_4763 carbonate dehydratase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; PFAM: Carbonic anhydrase
YP_003997987.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4069 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein
YP_003997988.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; KEGG: sli:Slin_6182 phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain
YP_003997989.1	KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997990.1	COGs: COG0049 Ribosomal protein S7; InterPro IPR020606:IPR005717:IPR000235; KEGG: dfe:Dfer_4340 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_003997991.1	COGs: COG0048 Ribosomal protein S12; InterPro IPR006032:IPR005679; KEGG: chu:CHU_3166 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_003997992.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002347:IPR002198; KEGG: sli:Slin_0415 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003997993.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: zpr:ZPR_4369 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: Ureidoglycolate lyase; SPTR: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_003997994.1	COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: chu:CHU_3667 hypothetical protein; PFAM: Protein of unknown function DUF2130; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2130)
YP_003997995.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR018517:IPR001269:IPR004652; KEGG: dfe:Dfer_2996 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; SPTR: TIM-barrel protein, nifR3 family; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family; tRNA dihydrouridine synthase A
YP_003997996.1	KEGG: fma:FMG_1202 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003997997.1	KEGG: fno:Fnod_1146 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3298)
YP_003997998.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dfe:Dfer_3559 aminotransferase class IV; PFAM: aminotransferase class IV; SPTR: Aminotransferase class IV; PFAM: Aminotransferase class IV
YP_003997999.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR017871:IPR003439; KEGG: dfe:Dfer_4119 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family
YP_003998000.1	InterPro IPR007139; KEGG: sli:Slin_5235 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349)
YP_003998001.1	InterPro IPR014985; KEGG: pct:PC1_2567 WbqC-like family protein; PFAM: WbqC-like family protein; SPTR: Putative uncharacterized protein; PFAM: WbqC-like protein family
YP_003998002.1	InterPro IPR011761; KEGG: bpu:BPUM_3224 carbamoylphosphate synthase large subunit short form; SPTR: Carbamoylphosphate synthase large subunit short form
YP_003998003.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_0333 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003998004.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: avi:Avi_5579 hypothetical protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Putative uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_003998005.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_4419 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Aminotransferase class-III; PFAM: Aminotransferase class-III
YP_003998006.1	COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000706:IPR000534:IPR012280; KEGG: dfe:Dfer_4422 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_003998007.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: sli:Slin_1084 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_003998008.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; InterPro IPR020593:IPR012134:IPR000965; KEGG: sli:Slin_0425 gamma-glutamyl phosphate reductase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_003998009.1	InterPro IPR010496; KEGG: gfo:GFO_1721 secreted protein containing DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003998010.1	COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dfe:Dfer_3652 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_003998011.1	InterPro IPR008775; KEGG: aci:ACIAD3482 hypothetical protein; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Phytanoyl-CoA dioxygenase (PhyH)
YP_003998012.1	COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR002471:IPR002470:IPR004106; KEGG: dfe:Dfer_4608 prolyl oligopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family
YP_003998013.1	InterPro IPR006260:IPR019734:IPR013026; KEGG: cpi:Cpin_6351 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_003998014.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: sli:Slin_1737 sodium:dicarboxylate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter family
YP_003998015.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: sli:Slin_5739 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat
YP_003998016.1	InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_003998017.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Putative xylosidase/arabinosidase; PFAM: Glycosyl hydrolases family 43
YP_003998018.1	InterPro IPR000601:IPR001434:IPR007110; KEGG: fps:FP0688 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: PKD domain
YP_003998019.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR002052:IPR020612:IPR013704; KEGG: sli:Slin_1403 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; Radical SAM N-terminal
YP_003998020.1	COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR018204:IPR002028; KEGG: dfe:Dfer_3798 tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_003998021.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3904 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase family M28
YP_003998022.1	KEGG: sli:Slin_5597 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998023.1	KEGG: dfe:Dfer_4025 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998024.1	KEGG: cpr:CPR_1035 GGDEF domaiN-containing protein; SPTR: Putative uncharacterized protein
YP_003998025.1	InterPro IPR012910; KEGG: fjo:Fjoh_2098 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003998026.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000123:IPR000477:IPR013597; KEGG: zpr:ZPR_3982 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998027.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000123:IPR000477:IPR013597; KEGG: zpr:ZPR_3982 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998028.1	InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; manually curated; PFAM: IS66 Orf2 like protein
YP_003998029.1	KEGG: dal:Dalk_5240 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998030.1	COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: sli:Slin_6980 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; PFAM: Integrase core domain
YP_003998031.1	KEGG: pfh:PFHG_03089 conserved hypothetical protein; SPTR: Conserved Plasmodium membrane protein
YP_003998032.1	KEGG: tva:TVAG_017660 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998033.1	KEGG: amu:Amuc_1604 NADH dehydrogenase (quinone); SPTR: Predicted protein
YP_003998034.1	InterPro IPR000866:IPR017936; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Redoxin domain protein; PFAM: AhpC/TSA family
YP_003998035.1	InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998036.1	KEGG: cpi:Cpin_2265 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998037.1	KEGG: cpi:Cpin_0072 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998038.1	KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE
YP_003998039.1	KEGG: ago:AGOS_AEL004W AEL004Wp; SPTR: AEL004Wp
YP_003998040.1	COGs: COG2253 conserved hypothetical protein; InterPro IPR014942; KEGG: dol:Dole_0814 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003998041.1	COGs: COG5340 transcriptional regulator protein; KEGG: fjo:Fjoh_4390 transcriptional regulator-like protein; SPTR: Transcriptional regulator-like protein
YP_003998042.1	InterPro IPR013096; KEGG: bcj:BCAM0980 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Putative uncharacterized protein; PFAM: Cupin domain
YP_003998043.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002347:IPR002198; KEGG: pae:PA3128 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Probable short-chain dehydrogenase; PFAM: short chain dehydrogenase
YP_003998044.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR013332:IPR013752; KEGG: sli:Slin_2608 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; SPTR: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_003998045.1	COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: dfe:Dfer_0750 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family with aminotransferase domain; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II
YP_003998046.1	InterPro IPR000182; KEGG: dfe:Dfer_2571 transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003998047.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003998048.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR003594:IPR010559; KEGG: fba:FIC_00181 sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Possible sensor protein; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003998049.1	InterPro IPR008160; KEGG: coc:Coch_1525 hypothetical protein; PFAM: Collagen triple helix repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies)
YP_003998050.1	InterPro IPR002047; KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998051.1	KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998052.1	InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_003998053.1	InterPro IPR011933; KEGG: sli:Slin_1217 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain
YP_003998054.1	KEGG: dfe:Dfer_3531 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998055.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904:IPR002347:IPR002198; KEGG: gfo:GFO_1525 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase family protein; PFAM: short chain dehydrogenase
YP_003998056.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR012259:IPR001796; KEGG: dfe:Dfer_4811 dihydrofolate reductase; PFAM: dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase; PFAM: Dihydrofolate reductase
YP_003998057.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: bth:BT_2364 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998058.1	InterPro IPR012944; KEGG: bfs:BF0595 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998059.1	COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449:IPR021135; KEGG: fba:FIC_00592 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase 1; PFAM: Phosphoenolpyruvate carboxylase
YP_003998060.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: dfe:Dfer_3883 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_003998061.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014001:IPR001650:IPR000629:IPR011545:IPR 014021:IPR014014; KEGG: sli:Slin_1766 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003998062.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583:IPR004108:IPR017932; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; hydrogenase large subunit domain protein; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; manually curated; PFAM: Glutamine amidotransferases class-II
YP_003998063.1	COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: dfe:Dfer_4417 ferrochelatase; PFAM: ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_003998064.1	KEGG: sli:Slin_1179 lipoprotein; SPTR: Putative lipoprotein
YP_003998065.1	COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR000897:IPR004780:IPR013822:IPR 004125; KEGG: sli:Slin_4758 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; SPTR: Signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_003998066.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000123:IPR000477:IPR013597; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998067.1	KEGG: dfe:Dfer_4955 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998068.1	KEGG: dfe:Dfer_3626 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998069.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_6032 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998070.1	KEGG: dfe:Dfer_4980 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998071.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR006638:IPR020612:IPR005839:IPR005840:IPR 013848:IPR007197:IPR002792; KEGG: sli:Slin_5359 MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_003998072.1	KEGG: sli:Slin_6385 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998073.1	KEGG: sli:Slin_4943 cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase, subunit III
YP_003998074.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: sli:Slin_1197 DNA repair protein RecO; PFAM: Recombination protein O RecO; SPTR: DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_003998075.1	COGs: COG0344 membrane protein; InterPro IPR020788:IPR003811; KEGG: gbm:Gbem_0574 membrane protein; PFAM: protein of unknown function DUF205; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase
YP_003998076.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR002034:IPR000891; KEGG: sli:Slin_5897 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: Pyruvate carboxyltransferase; PFAM: HMGL-like
YP_003998077.1	COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR001697:IPR015794; KEGG: dfe:Dfer_3378 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_003998078.1	InterPro IPR003033; KEGG: rmr:Rmar_2198 sterol-binding domain protein; PFAM: Sterol-binding domain protein; SPTR: Sterol-binding domain protein; PFAM: SCP-2 sterol transfer family
YP_003998079.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_4745 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998080.1	KEGG: tps:THAPSDRAFT_9642 hypothetical protein
YP_003998081.1	InterPro IPR008910; KEGG: sli:Slin_4747 TM helix repeat-containing protein; PFAM: Conserved TM helix repeat-containing protein; SPTR: Conserved TM helix repeat-containing protein; PFAM: Mechanosensitive ion channel; Conserved TM helix
YP_003998082.1	KEGG: dfe:Dfer_3492 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3078)
YP_003998083.1	COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: rbi:RB2501_07395 large-conductance mechanosensitive channel; PFAM: large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_003998084.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_4751 cell cycle protein; PFAM: cell cycle protein; SPTR: Cell cycle protein; PFAM: Cell cycle protein
YP_003998085.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR006009:IPR004276:IPR007235; KEGG: dfe:Dfer_3488 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_003998086.1	InterPro IPR007472; KEGG: hne:HNE_0893 arginyl-tRNA-protein transferase; PFAM: Arginine-tRNA-protein transferase domain protein; SPTR: Putative uncharacterized protein; PFAM: Arginine-tRNA-protein transferase, C terminus
YP_003998087.1	KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998088.1	COGs: COG0849 ActiN-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: sli:Slin_4755 cell division protein FtsA; PFAM: cell division protein FtsA; SPTR: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_003998089.1	COGs: COG0206 Cell division GTPase; InterPro IPR000158:IPR003008:IPR018316; KEGG: sli:Slin_4756 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_003998090.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR006168:IPR011128:IPR006109; KEGG: dfe:Dfer_2864 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_003998091.1	KEGG: mdo:100029663 hypothetical protein LOC100029663; SPTR: Dentin sialophosphoprotein
YP_003998092.1	InterPro IPR020084:IPR000086; KEGG: dfe:Dfer_3873 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003998093.1	KEGG: sli:Slin_4393 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998094.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR000792; KEGG: sli:Slin_4426 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_003998095.1	COGs: COG0750 membrane-associated ZN-dependent protease 1; InterPro IPR001478:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_003998096.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR006058:IPR004489:IPR001041:IPR017896; KEGG: phe:Phep_0212 succinate dehydrogenase/fumarate reductase iroN-sulfur subunit; PFAM: ferredoxin; SPTR: Succinate dehydrogenase/fumarate reductase iroN-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iroN-sulfur protein; PFAM: 2Fe-2S iroN-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iroN-sulfur protein
YP_003998097.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR011280:IPR003953:IPR004112; KEGG: dfe:Dfer_3970 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup
YP_003998098.1	InterPro IPR011138; KEGG: sli:Slin_5011 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase, cytochrome b558 subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
YP_003998099.1	InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_2445 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998100.1	InterPro IPR012944; KEGG: cpi:Cpin_2446 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Outer membrane protein; PFAM: SusD family
YP_003998101.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR005829:IPR001867; KEGG: cpi:Cpin_0346 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998102.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: cpi:Cpin_0345 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998103.1	KEGG: aga:AgaP_AGAP004761 AGAP004761-PA; SPTR: AGAP004761-PA
YP_003998104.1	COGs: COG0172 Seryl-tRNA synthetase; InterProIPR018156:IPR002317:IPR015866:IPR002314:IPR 006195; KEGG: sli:Slin_5630 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase
YP_003998105.1	COGs: COG0527 Aspartokinase; InterPro IPR018042:IPR001341:IPR001048; KEGG: dfe:Dfer_3817 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase
YP_003998106.1	COGs: COG0054 Riboflavin synthase beta-chain; InterPro IPR002180; KEGG: sli:Slin_5633 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; manually curated; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_003998107.1	COGs: COG1729 conserved hypothetical protein; InterPro IPR019734:IPR018704:IPR013026; KEGG: dfe:Dfer_3815 tetratricopeptide domain protein; PFAM: Protein of unknown function DUF2133; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide domain protein; PFAM: Tetratricopeptide repeat; Uncharacterized protein conserved in bacteria (DUF2133)
YP_003998108.1	COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017597:IPR001017; KEGG: dfe:Dfer_3887 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit
YP_003998109.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR018078:IPR001238:IPR003395; KEGG: sli:Slin_5508 DNA replication and repair protein RecF; PFAM: SMC domain protein; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_003998110.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198; KEGG: dfe:Dfer_5643 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003998111.1	KEGG: pdi:BDI_3488 30S ribosomal protein S9; SPTR: Ribosomal protein S9
YP_003998112.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR020861:IPR000652; KEGG: chu:CHU_3277 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_003998113.1	COGs: COG0217 conserved hypothetical protein; InterPro IPR002876; KEGG: sli:Slin_0228 protein of unknown function DUF28; PFAM: protein of unknown function DUF28; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_003998114.1	COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: dfe:Dfer_0048 protein of unknown function DUF1501; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501)
YP_003998115.1	COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_1188 protein of unknown function DUF1800; PFAM: protein of unknown function DUF1800; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1800)
YP_003998116.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: gau:GAU_3808 outer membrane protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003998117.1	InterPro IPR006061; KEGG: gau:GAU_3807 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998118.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: sli:Slin_5048 regulatory protein RecX; PFAM: regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family
YP_003998119.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_5754 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family
YP_003998120.1	COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR006295:IPR013264:IPR 006171; KEGG: dfe:Dfer_3370 DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domaiN-containing protein; SMART: Toprim sub domaiN-containing protein; SPTR: DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core
YP_003998121.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: dfe:Dfer_0206 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003998122.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: phe:Phep_3531 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Chromosome partitioning protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_003998123.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR001241:IPR018522:IPR000565:IPR 011557:IPR013506:IPR006171:IPR002288; KEGG: dfe:Dfer_4986 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domaiN-containing protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_003998124.1	COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: fjo:Fjoh_4066 ribonucleotide reductase; PFAM: ribonucleotide reductase; SPTR: Ribonucleotide reductase; PFAM: Ribonucleotide reductase, small chain
YP_003998125.1	InterPro IPR000788:IPR013350; KEGG: fjo:Fjoh_4065 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; SPTR: Ribonucleoside-diphosphate reductase, alpha chain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain
YP_003998126.1	COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: ilo:IL2398 phosphodiesterase-nucleotide pyrophosphatase-like protein; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PRIAM: Phosphodiesterase I; SPTR: Phosphodiesterase I; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003998127.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR020471:IPR001395; KEGG: sli:Slin_4718 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003998128.1	KEGG: cpi:Cpin_7179 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: DinB family
YP_003998129.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: dfe:Dfer_3249 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-dependent synthetase and ligase; manually curated; PFAM: AMP-binding enzyme
YP_003998130.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: sli:Slin_1083 protein of unknown function DUF37; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein Slin_1083; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_003998131.1	KEGG: phe:Phep_3348 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998132.1	COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: fjo:Fjoh_4295 CzcA family heavy metal efflux protein; PFAM: acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_003998133.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_4294 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003998134.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fjo:Fjoh_4293 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003998135.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR003660:IPR005467; KEGG: fjo:Fjoh_2734 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998136.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: fjo:Fjoh_2735 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998137.1	COGs: COG1785 Alkaline phosphatase; InterPro IPR001952:IPR006311; KEGG: fjo:Fjoh_3187 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Alkaline phosphatase
YP_003998138.1	COGs: COG0620 Methionine synthase II (cobalamiN-independent); InterPro IPR006276:IPR013215:IPR002629; KEGG: fjo:Fjoh_1519 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamiN-B12 independent; CobalamiN-independent synthase MetE domain protein; PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase; SPTR:5-methyltetrahydropteroyltriglutamate--homocys teinemethyltransferase; TIGRFAM:5-methyltetrahydropteroyltriglutamate/homoc ysteineS-methyltransferase; manually curated; PFAM: CobalamiN-independent synthase, N-terminal domain; CobalamiN-independent synthase, Catalytic domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
YP_003998139.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: rmr:Rmar_0906 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase family M28
YP_003998140.1	COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254; KEGG: ote:Oter_1686 hemolysin III family channel protein; PFAM: Hly-III family protein; SPTR: Channel protein, hemolysin III family; PFAM: HaemolysiN-III related; TIGRFAM: channel protein, hemolysin III family
YP_003998141.1	COGs: COG0548 Acetylglutamate kinase; InterPro IPR011148:IPR004662:IPR001048; KEGG: dfe:Dfer_4174 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; manually curated; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_003998142.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_3288 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998143.1	KEGG: fjo:Fjoh_3287 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003998144.1	KEGG: fjo:Fjoh_3289 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003998145.1	KEGG: dsi:Dsim_GD20893 GD20893 gene product from transcript GD20893-RA; SPTR: Putative uncharacterized protein
YP_003998146.1	InterPro IPR012910:IPR000531; KEGG: sli:Slin_1227 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998147.1	KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003998148.1	KEGG: mdo:100012576 similar to Thrombospondin type-1 domaiN-containing protein 7B; SPTR: Prephenate dehydratase
YP_003998149.1	KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998150.1	KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MG2 domain
YP_003998151.1	KEGG: dfe:Dfer_3925 conserved hypothetical protein, membrane or secreted; SPTR: Putative uncharacterized protein
YP_003998152.1	COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: coc:Coch_0508 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase; PFAM: Phospholipase D Active site motif
YP_003998153.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR003593:IPR007692:IPR007693:IPR007694; KEGG: dfe:Dfer_1073 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_003998154.1	KEGG: dfe:Dfer_3011 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_003998155.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017860:IPR017861:IPR000905; KEGG: dfe:Dfer_3012 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_003998156.1	COGs: COG5009 Membrane carboxypeptidase/penicilliN-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_5029 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicilliN-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_003998157.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: dfe:Dfer_0206 cobyrinic acid ac-diamide synthase; SPTR: SpoOJ regulator protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003998158.1	COGs: COG5495 conserved hypothetical protein; InterPro IPR004455:IPR018931; KEGG: dfe:Dfer_3502 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: Domain of unknown function DUF2520; NADP oxidoreductase coenzyme F420-dependent; SPTR: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: Domain of unknown function (DUF2520); NADP oxidoreductase coenzyme F420-dependent
YP_003998159.1	KEGG: sli:Slin_4490 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998160.1	InterPro IPR001387; KEGG: fjo:Fjoh_2821 XRE family transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003998161.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fjo:Fjoh_0498 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003998162.1	COGs: COG3040 Bacterial lipocalin; InterPro IPR022272:IPR002446:IPR022271:IPR013208; KEGG: fjo:Fjoh_2134 lipocalin family protein; PFAM: Lipocalin family protein; SPTR: Outer membrane lipoprotein (Lipocalin); PFAM: LipocaliN-like domain
YP_003998163.1	InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_0454 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998164.1	InterPro IPR012944; KEGG: sli:Slin_6450 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family
YP_003998165.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: sli:Slin_5831 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domaiN-containing protein; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_003998166.1	InterPro IPR011658:IPR004843; KEGG: plm:Plim_2974 metallophosphoesterase; PFAM: metallophosphoesterase; SMART: PA14 domain protein; SPTR: Metallophosphoesterase; PFAM: CalcineuriN-like phosphoesterase; PA14 domain
YP_003998167.1	COGs: COG0060 Isoleucyl-tRNA synthetase; InterPro IPR015905:IPR002301:IPR002300:IPR013155; KEGG: dfe:Dfer_4664 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodoN-binding; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); AnticodoN-binding domain; TIGRFAM: isoleucyl-tRNA synthetase
YP_003998168.1	InterPro IPR020218; KEGG: sli:Slin_1755 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998169.1	InterPro IPR005151; KEGG: kko:Kkor_2190 peptidase S41; PFAM: peptidase S41; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S41
YP_003998170.1	InterPro IPR008395; KEGG: mxa:MXAN_2302 lipoprotein; PFAM: Agenet domaiN-containing protein; SPTR: Putative lipoprotein; PFAM: RNA binding activity-knot of a chromodomain
YP_003998171.1	InterPro IPR011701; KEGG: fjo:Fjoh_1167 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003998172.1	InterPro IPR006626; KEGG: sli:Slin_3272 parallel beta-helix repeat protein; SPTR: Parallel beta-helix repeat protein; TIGRFAM: parallel beta-helix repeat-containing protein; parallel beta-helix repeat (two copies)
YP_003998173.1	InterPro IPR022269; KEGG: sli:Slin_3273 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: hypothetical protein; TIGRFAM: conserved hypothetical protein, HNE_0200 family
YP_003998174.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR001789:IPR018060:IPR 011110:IPR011123:IPR000005:IPR005467; KEGG: phe:Phep_1317 ATP-binding region ATPase domain protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: ATP-binding region ATPase domain protein; PFAM: Y_Y_Y domain; Response regulator receiver domain; Two component regulator propeller; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998175.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_2077 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: SusC-like TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998176.1	InterPro IPR012944; KEGG: fjo:Fjoh_2078 RagB/SusD domaiN-containing protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003998177.1	COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: fjo:Fjoh_2079 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: Candidate xylanase; Glycoside hydrolase family 10; PFAM: Glycosyl hydrolase family 10
YP_003998178.1	KEGG: fjo:Fjoh_2080 PKD domaiN-containing protein; SPTR: PKD domain containing protein
YP_003998179.1	KEGG: fjo:Fjoh_2081 hypothetical protein; SPTR: Beta-agarase-like protein; Glycoside hydrolase family 50
YP_003998180.1	KEGG: sna:Snas_1132 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998181.1	KEGG: cnb:CNBI1500 hypothetical protein; SPTR: Mitochondrion protein, putative
YP_003998182.1	COGs: COG3158 K+ transporter; InterPro IPR003855; KEGG: dfe:Dfer_4676 K potassium transporter; PFAM: K potassium transporter; SPTR: K potassium transporter; PFAM: K+ potassium transporter
YP_003998183.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: zpr:ZPR_1366 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998184.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: zpr:ZPR_1367 osmosensitive K+ channel signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Osmosensitive K+ channel signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998185.1	COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: dfe:Dfer_3089 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: Na(+)/H(+) antiporter nhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; TC 2.A.33.1.1
YP_003998186.1	COGs: COG2374 extracellular nuclease; InterPro IPR005135; KEGG: npu:Npun_F1424 outer membrane adhesin like proteiin; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative outer membrane adhesin like proteiin; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003998187.1	COGs: COG0604 NADPH:quinone reductase and related ZN-dependent oxidoreductase; InterPro IPR013154:IPR013149:IPR002539; KEGG: maq:Maqu_2810 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; MaoC domain protein dehydratase; SPTR: Alcohol dehydrogenase, zinc-binding domain protein; PFAM: MaoC like domain; Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003998188.1	COGs: COG1321 MN-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: fba:FIC_02393 MN-dependent transcriptional regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: Metal-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_003998189.1	COGs: COG1510 transcriptional regulator protein; KEGG: sli:Slin_3598 transcriptional regulator proteiN-like protein; SPTR: Transcriptional regulator proteiN-like protein; manually curated; PFAM: Sugar-specific transcriptional regulator TrmB
YP_003998190.1	KEGG: edi:EDI_098530 hypothetical protein; SPTR: Putative hemagglutinin/hemolysiN-related protein
YP_003998191.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: dfe:Dfer_3908 PfkB domain protein; PFAM: PfkB domain protein; SPTR: PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_003998192.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998193.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fjo:Fjoh_4487 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase; PFAM: Nitroreductase family
YP_003998194.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cpi:Cpin_2871 transcriptional regulator, HxlR family; PFAM: helix-turN-helix HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turN-helix
YP_003998195.1	InterPro IPR011637; KEGG: cpi:Cpin_6032 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX
YP_003998196.1	KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998197.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_003998198.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: sli:Slin_4901 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein
YP_003998199.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: cpi:Cpin_0505 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9B, dipeptidylpeptidase IV domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_003998200.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5186 transcriptional repressor, CopY family; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; PFAM: Penicillinase repressor
YP_003998201.1	COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: dfe:Dfer_3722 peptidase M56 BlaR1; PFAM: peptidase M56 BlaR1; SPTR: Peptidase M56 BlaR1; PFAM: BlaR1 peptidase M56
YP_003998202.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: dfe:Dfer_4418 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/OrN-binding region; SPTR: Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YP_003998203.1	COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2971 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003998204.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: dfe:Dfer_3744 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_003998205.1	COGs: COG1164 Oligoendopeptidase F; InterPro IPR011976:IPR001567; KEGG: sli:Slin_5185 oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: oligoendopeptidase, M3 family; PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family
YP_003998206.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_1870 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003998207.1	manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_003998208.1	InterPro IPR010879; KEGG: mmb:Mmol_2344 protein of unknown function DUF1508; PFAM: protein of unknown function DUF1508; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1508)
YP_003998209.1	COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR001540:IPR015883; KEGG: cpi:Cpin_1798 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2
YP_003998210.1	COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR006282:IPR007371; KEGG: sli:Slin_2799 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic domaiN-containing protein; SPTR: Thiamine pyrophospokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase
YP_003998211.1	InterPro IPR000788:IPR013346:IPR005144:IPR013509; KEGG: sli:Slin_6359 ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_003998212.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: dfe:Dfer_3047 aminotransferase class V; PFAM: aminotransferase class V; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_003998213.1	COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: sli:Slin_5892 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-(Acyl-carrier-protein) reductase (NADH)
YP_003998214.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330:IPR014021; KEGG: sli:Slin_6180 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: SNF2-related protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_003998215.1	KEGG: dfe:Dfer_3812 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998216.1	COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR018321:IPR018322:IPR006148:IPR003737; KEGG: sli:Slin_5415 glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; LmbE family protein; SPTR: Glucosamine-6-phosphate isomerase; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; GlcNAc-PI de-N-acetylase; TIGRFAM: glucosamine-6-phosphate isomerase
YP_003998217.1	KEGG: chu:CHU_0798 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998218.1	COGs: COG1528 FerritiN-like protein; InterPro IPR008331:IPR009040; KEGG: fps:FP1782 ferritin; PFAM: Ferritin Dps family protein; SPTR: Ferritin; PFAM: FerritiN-like domain
YP_003998219.1	KEGG: bbo:BBOV_III010000 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998220.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR019999:IPR006805:IPR015890; KEGG: dfe:Dfer_3790 anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme
YP_003998221.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR006220:IPR011702:IPR001317:IPR006221:IPR 000991:IPR017926; KEGG: sli:Slin_5473 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_003998222.1	KEGG: chu:CHU_3070 hypothetical protein; SPTR: GTP-binding protein EngA; PFAM: SprT-like family
YP_003998223.1	KEGG: sli:Slin_5949 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25
YP_003998224.1	KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998225.1	COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: sli:Slin_5617 ribosomal L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_003998226.1	InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998227.1	KEGG: pmx:PERMA_1126 signal transduction response regulator; SPTR: Signal transduction response regulator
YP_003998228.1	KEGG: met:M446_0887 patatin; SPTR: Patatin; PFAM: PatatiN-like phospholipase
YP_003998229.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_2298 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998230.1	InterPro IPR004360; KEGG: bcg:BCG9842_B2297 prolyl endopeptidase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Prolyl endopeptidase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003998231.1	InterPro IPR003088:IPR009056:IPR011031; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Class III cytochrome C family; Cytochrome c
YP_003998232.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017871:IPR017896; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iroN-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iroN-sulfur binding subunit; PFAM: Molydopterin dinucleotide binding domain
YP_003998233.1	COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dfe:Dfer_3475 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD
YP_003998234.1	KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; PFAM: Protein of unknown function (DUF3341)
YP_003998235.1	InterPro IPR003088:IPR009056; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: cytochrome c class I; SPTR: Cytochrome c family protein; PFAM: Cytochrome c
YP_003998236.1	KEGG: sli:Slin_5669 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998237.1	COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429:IPR011759; KEGG: dfe:Dfer_3471 cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; SPTR: Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain
YP_003998238.1	COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I
YP_003998239.1	COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: dfe:Dfer_3469 cytochrome oxidase assembly; PFAM: cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly; manually curated; PFAM: Cytochrome oxidase assembly protein
YP_003998240.1	COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); InterPro IPR000537:IPR006369; KEGG: dfe:Dfer_3468 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase
YP_003998241.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5674 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III
YP_003998242.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5675 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III
YP_003998243.1	KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: caa(3)-type oxidase, subunit IV
YP_003998244.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782:IPR017936; KEGG: sli:Slin_5677 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_003998245.1	COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dfe:Dfer_3463 protein of unknown function DUF420; PFAM: protein of unknown function DUF420; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF420)
YP_003998246.1	KEGG: dfe:Dfer_3462 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998247.1	COGs: COG4675 MicrocystiN-dependent protein; InterPro IPR011083; KEGG: shw:Sputw3181_3688 phage tail collar domaiN-containing protein; PFAM: Tail Collar domain protein; SPTR: Phage Tail Collar domain protein; PFAM: Phage Tail Collar Domain
YP_003998248.1	KEGG: cpe:CPE0468 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Coenzyme PQQ synthesis protein D (PqqD)
YP_003998249.1	InterPro IPR018247:IPR003367:IPR006665; KEGG: fjo:Fjoh_0697 OmpA/MotB domaiN-containing protein; PFAM: Thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA family; Thrombospondin type 3 repeat
YP_003998250.1	COGs: COG1770 Protease II; InterPro IPR002470:IPR004106; KEGG: sli:Slin_4734 oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family
YP_003998251.1	COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: sli:Slin_4736 peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28
YP_003998252.1	InterPro IPR013344:IPR000788; KEGG: zpr:ZPR_2826 ribonucleotide reductase large subunit; PFAM: ribonucleotide reductase large subunit; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
YP_003998253.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR001208:IPR000523:IPR003593; KEGG: sli:Slin_4052 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein
YP_003998254.1	KEGG: ptm:GSPATT00022588001 hypothetical protein; SPTR: Chromosome undetermined scaffold_74, whole genome shotgun sequence
YP_003998255.1	InterPro IPR012910; KEGG: pru:PRU_2417 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein
YP_003998256.1	InterPro IPR019115; KEGG: zpr:ZPR_4167 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_003998257.1	KEGG: shc:Shell_0863 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998258.1	KEGG: bfr:BF0050 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998261.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003998262.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003998263.1	KEGG: aae:aq_206 nitrite reductase (NAD(P)H) large subunit; SPTR: Nitrite reductase (NAD(P)H) large subunit
YP_003998264.1	KEGG: nvi:100124000 Van Gogh; SPTR: K(+)/H(+) antiporter
YP_003998265.1	InterPro IPR002514; KEGG: paa:Paes_2107 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003998266.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: gfo:GFO_1996 integrase/transposase; PFAM: Integrase catalytic region; SPTR: Integrase; manually curated; PFAM: Integrase core domain
YP_003998267.1	COGs: COG3436 Transposase and inactivated derivatives; KEGG: zpr:ZPR_3418 transposase; SPTR: Transposase; PFAM: Transposase IS66 family
YP_003998268.1	InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; manually curated; PFAM: IS66 Orf2 like protein
YP_003998269.1	KEGG: tet:TTHERM_01613760 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998270.1	InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; manually curated; PFAM: IS66 Orf2 like protein
YP_003998271.1	KEGG: aac:Aaci_2984 transposase orf1 for insertion sequence element; SPTR: Putative uncharacterized protein
YP_003998272.1	InterPro IPR001387; KEGG: zpr:ZPR_1314 XRE family transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Helix-turN-helix domain protein; PFAM: Helix-turN-helix
YP_003998273.1	KEGG: pyo:PY04679 hypothetical protein; SPTR: Putative uncharacterized protein PY04679
YP_003998274.1	KEGG: osa:4350361 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998275.1	KEGG: cpi:Cpin_0864 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998276.1	InterPro IPR001387; KEGG: ppd:Ppro_0153 XRE family transcriptional regulator; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turN-helix
YP_003998277.1	InterPro IPR012944; KEGG: fjo:Fjoh_2078 RagB/SusD domaiN-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family
YP_003998278.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_2077 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998279.1	COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_1658 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein
YP_003998280.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1
YP_003998281.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dfe:Dfer_2668 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Putative uncharacterized protein; PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_003998282.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dfe:Dfer_3720 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_003998283.1	COGs: COG4124 Beta-mannanase; InterPro IPR000805; KEGG: gym:GYMC10_1236 mannan endo-1,4-beta-mannosidase; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannan endo-1,4-beta-mannosidase; PFAM: Glycosyl hydrolase family 26
YP_003998284.1	InterPro IPR001547; KEGG: scl:sce4910 cellulase; PFAM: glycoside hydrolase family 5; PRIAM: Cellulase; SPTR: Cellulase; PFAM: Cellulase (glycosyl hydrolase family 5)
YP_003998285.1	KEGG: phe:Phep_1935 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998286.1	KEGG: dfe:Dfer_5660 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998287.1	COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR012373:IPR006860; KEGG: fjo:Fjoh_4790 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein
YP_003998288.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_5658 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1
YP_003998289.1	KEGG: ote:Oter_1927 ATP/GTP-binding; SPTR: Periplasmic ATP/GTP-binding protein
YP_003998290.1	KEGG: bfs:BF0780 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998291.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfs:BF0781 TonB-dependent receptor protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor
YP_003998292.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sli:Slin_4762 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003998293.1	InterPro IPR012944; KEGG: sli:Slin_4761 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998294.1	InterPro IPR012910:IPR000531; KEGG: sli:Slin_4760 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003998295.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004540:IPR005225:IPR004161:IPR 005517:IPR000640; KEGG: sli:Slin_5571 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domaiN-containing protein; SPTR: Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003998296.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021:IPR001650:IPR014014:IPR000629:IPR 011545:IPR014001; KEGG: sli:Slin_5691 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003998297.1	KEGG: lbf:LBF_2068 KefB related efflux transport protein; SPTR: Putative uncharacterized protein
YP_003998298.1	KEGG: zpr:ZPR_3535 hypothetical protein; SPTR: Possible transcriptional regulator
YP_003998299.1	KEGG: fba:FIC_02299 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998300.1	InterPro IPR012944; KEGG: zpr:ZPR_2897 RagB/SusD family protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD family protein; PFAM: SusD family
YP_003998301.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_2898 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998302.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_6639 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003998303.1	COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR020558:IPR004404:IPR000581; KEGG: dfe:Dfer_3684 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_003998304.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR000399:IPR001917:IPR012846:IPR012001:IPR 012000:IPR011766; KEGG: dfe:Dfer_3681 acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domaiN-containing protein; thiamine pyrophosphate central domaiN-containing protein; SPTR: Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_003998305.1	COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789:IPR002912:IPR019455; KEGG: dfe:Dfer_3680 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: Acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit
YP_003998306.1	COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013023:IPR013116:IPR000506; KEGG: sli:Slin_5912 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domaiN-containing protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_003998307.1	KEGG: phe:Phep_3796 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998308.1	KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998309.1	COGs: COG0137 Argininosuccinate synthase; InterPro IPR018223:IPR001518; KEGG: sli:Slin_0407 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_003998310.1	COGs: COG4783 Putative ZN-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: rbi:RB2501_02560 hypothetical protein; PFAM: peptidase M48 Ste24p; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M48
YP_003998311.1	COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: sli:Slin_5045 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase, small chain
YP_003998312.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen
YP_003998313.1	InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_003998314.1	KEGG: sli:Slin_4983 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998315.1	InterPro IPR013026:IPR022272; KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein
YP_003998316.1	COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR004428:IPR003817; KEGG: sli:Slin_5649 phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein
YP_003998317.1	COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: dfe:Dfer_3847 ribonuclease H; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII
YP_003998318.1	InterPro IPR006311:IPR013097; KEGG: pat:Patl_1144 stress responsive alpha-beta barrel; PFAM: Stress responsive alpha-beta barrel domaiN-containing protein; SPTR: Possible Stress responsive alpha-beta barrel; PFAM: Stress responsive A/B Barrel Domain
YP_003998319.1	InterPro IPR010496; KEGG: dfe:Dfer_4250 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003998320.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR002645:IPR011547; KEGG: rbi:RB2501_07580 probable sulfate permease; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulphate transporter; PFAM: Sulfate transporter family; STAS domain
YP_003998321.1	COGs: COG0554 Glycerol kinase; InterPro IPR018483:IPR005999:IPR018484:IPR018485; KEGG: sli:Slin_5935 glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase
YP_003998322.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR001958:IPR011701; KEGG: lic:LIC12361 permease; PFAM: major facilitator superfamily MFS_1; SPTR: Tetracycline resistance protein; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_003998323.1	InterPro IPR005807:IPR001901; KEGG: sli:Slin_4483 preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_003998324.1	COGs: COG0250 Transcription antiterminator; InterPro IPR015869:IPR001062:IPR006645:IPR005824; KEGG: dfe:Dfer_3454 NusG antitermination factor; PFAM: NGN domaiN-containing protein; KOW domain protein; SMART: NGN domaiN-containing protein; KOW domain protein; SPTR: Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_003998325.1	KEGG: sli:Slin_4775 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998326.1	COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019863:IPR019196; KEGG: sli:Slin_4905 gliding-associated ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding-associated ABC transporter substrate-binding component GldG; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG
YP_003998327.1	KEGG: sli:Slin_4489 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998328.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: dfe:Dfer_4814 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_003998329.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR005761:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4739 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_003998330.1	COGs: COG3182 Uncharacterized iroN-regulated membrane protein; KEGG: fjo:Fjoh_1252 PepSY-associated TM helix domaiN-containing protein; SPTR: PepSY-associated TM helix domain protein
YP_003998331.1	KEGG: fjo:Fjoh_1253 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998332.1	KEGG: lmc:Lm4b_02727 hypothetical protein; SPTR: Putative membrane protein
YP_003998333.1	COGs: COG4774 Outer membrane receptor for monomeric catechols; InterPro IPR010105:IPR012910:IPR000531; KEGG: cpi:Cpin_2119 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_003998334.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4334 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D -alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_003998335.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: dfe:Dfer_4810 esterase; PFAM: esterase; SPTR: Putative esterase; PFAM: Putative esterase
YP_003998336.1	COGs: COG0366 Glycosidase; InterPro IPR015171:IPR006047:IPR019492:IPR006589; KEGG: cja:CJA_0735 alpha-amylase, putative, amy13E; PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; Cyclo-malto-dextrinase-like; SMART: alpha amylase catalytic sub domain; SPTR: Neopullulanase; manually curated; PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain
YP_003998337.1	COGs: COG0366 Glycosidase; InterPro IPR006047:IPR015237:IPR006589; KEGG: zpr:ZPR_2825 alpha-amylase precursor, GH13 family protein; PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; SPTR: Alpha-amylase, GH13 family protein; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF1939)
YP_003998338.1	KEGG: coc:Coch_0630 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998339.1	InterPro IPR018130:IPR012944; KEGG: cpi:Cpin_5091 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003998340.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998341.1	InterPro IPR012944; KEGG: sli:Slin_5058 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003998342.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_5059 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998343.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR018062:IPR020449:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998344.1	COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: fjo:Fjoh_1261 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003998345.1	KEGG: fps:FP0740 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998346.1	KEGG: cbr:CBG01408 Hypothetical protein CBG01408; SPTR: Putative uncharacterized protein
YP_003998347.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR018062:IPR000005; KEGG: zpr:ZPR_3376 regulatory protein; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Putative regulatory protein; manually curated; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998348.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: syn:slr1549 peptide deformylase; PFAM: formylmethionine deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003998349.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_0352 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003998350.1	InterPro IPR012910:IPR000531; KEGG: bvu:BVU_0038 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998351.1	InterPro IPR012944; KEGG: dfe:Dfer_0794 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003998352.1	InterPro IPR016518; KEGG: cpi:Cpin_7192 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Putative uncharacterized protein
YP_003998353.1	COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1407 esterase; PFAM: esterase; SPTR: Putative esterase; PFAM: Putative esterase
YP_003998354.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: zpr:ZPR_1033 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 43
YP_003998355.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1423 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Xylan 1,4-beta-xylosidase; PFAM: Glycosyl hydrolases family 43
YP_003998356.1	COGs: COG1312 D-mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_6196 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase; TIGRFAM: mannonate dehydratase; PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase
YP_003998357.1	COGs: COG3661 Alpha-glucuronidase; InterPro IPR011395:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus
YP_003998358.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002347:IPR002198; KEGG: sli:Slin_6198 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003998359.1	KEGG: sli:Slin_1718 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolase family 67 N-terminus
YP_003998360.1	COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: sli:Slin_1404 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: Endo-1,4-beta-xylanase; PFAM: Glycosyl hydrolase family 10
YP_003998361.1	COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR001927:IPR011701; KEGG: fjo:Fjoh_1997 sugar (glycoside-pentoside-hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: Sugar (and other) transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter
YP_003998362.1	InterPro IPR006710; KEGG: ttu:TERTU_1419 glycoside hydrolase family 43 domain protein; PFAM: glycoside hydrolase family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase family 43 domain protein; PFAM: Glycosyl hydrolases family 43
YP_003998363.1	InterPro IPR005181:IPR006104; KEGG: sli:Slin_1717 protein of unknown function DUF303 acetylesterase putative; PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303); Glycosyl hydrolases family 2, sugar binding domain
YP_003998364.1	KEGG: mxa:MXAN_2462 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998365.1	KEGG: phe:Phep_3158 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998366.1	COGs: COG4585 Signal transduction histidine kinase; InterProIPR019734:IPR005467:IPR013026:IPR002012:IPR 001440:IPR003594; KEGG: dfe:Dfer_4503 histidine kinase; PFAM: ATP-binding region ATPase domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide repeat; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Tetratricopeptide repeat
YP_003998367.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789; KEGG: cpi:Cpin_1732 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003998368.1	COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR012133:IPR008259:IPR000262; KEGG: zpr:ZPR_2958 L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; PRIAM: L-lactate dehydrogenase (cytochrome); SPTR: L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase
YP_003998369.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: fjo:Fjoh_4213 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase, FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003998370.1	COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: fjo:Fjoh_4214 xylose isomerase domaiN-containing protein; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype
YP_003998371.1	COGs: COG3347 conserved hypothetical protein; InterPro IPR013454:IPR002347:IPR002198:IPR001303; KEGG: fjo:Fjoh_4215 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
YP_003998372.1	InterPro IPR010476; KEGG: fjo:Fjoh_4216 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2; PFAM: L-rhamnose-proton symport protein (RhaT)
YP_003998373.1	InterPro IPR013737:IPR008902; KEGG: cpi:Cpin_6026 alpha-L-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain
YP_003998374.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847; KEGG: spe:Spro_2282 LysR family transcriptional regulator; PFAM: regulatory protein LysR; SPTR: Als operon regulatory protein AlsR; PFAM: Bacterial regulatory helix-turN-helix protein, lysR family
YP_003998375.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524; KEGG: phe:Phep_3881 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Regulatory protein GntR HTH; PFAM: Bacterial regulatory proteins, gntR family
YP_003998376.1	COGs: COG2824 Uncharacterized ZN-ribboN-containing protein involved in phosphonate metabolism; InterPro IPR004624:IPR013987:IPR013988; KEGG: chu:CHU_1339 alkylphosphonate uptake protein; PFAM: PhnA protein; SPTR: Alkylphosphonate uptake protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA
YP_003998377.1	COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: rca:Rcas_4423 hypothetical protein; PFAM: protein of unknown function DUF418; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF418)
YP_003998378.1	InterPro IPR006710; KEGG: bth:BT_4152 beta-galactosidase I; PFAM: glycoside hydrolase family 43; SPTR: Beta-galactosidase I; PFAM: Glycosyl hydrolases family 43
YP_003998379.1	InterPro IPR006104; KEGG: bth:BT_4145 hypothetical protein; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Sugar binding domain protein, glycosyl hydrolase family 2; PFAM: Glycosyl hydrolases family 2, sugar binding domain
YP_003998380.1	COGs: COG5434 Endopygalactorunase; InterPro IPR000568:IPR000743:IPR006626; KEGG: bth:BT_4146 exo-poly-alpha-D-galacturonosidase precursor; PFAM: glycoside hydrolase family 28; SPTR: Exo-poly-alpha-D-galacturonosidase; PFAM: Glycosyl hydrolases family 28
YP_003998381.1	KEGG: bth:BT_4147 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998382.1	COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: phe:Phep_0449 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88
YP_003998383.1	COGs: COG3254 conserved hypothetical protein; InterPro IPR013448:IPR008000; KEGG: bth:BT_4177 hypothetical protein; PFAM: protein of unknown function DUF718; SPTR: Putative uncharacterized protein; TIGRFAM: L-rhamnose 1-epimerase; PFAM: Domain of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase
YP_003998384.1	COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905:IPR001087; KEGG: bvu:BVU_0151 cytoplasmic protein; PFAM: glycosyl hydrolase family 88; lipolytic protein G-D-S-L family; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88; GDSL-like Lipase/Acylhydrolase
YP_003998385.1	KEGG: bth:BT_4175 hypothetical protein; SPTR: FG-GAP repeat protein
YP_003998386.1	InterPro IPR012944; KEGG: bvu:BVU_0172 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998387.1	InterPro IPR012910:IPR000531; KEGG: pru:PRU_1591 receptor antigen RagA; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998388.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR018062:IPR 004358:IPR011110:IPR011123:IPR003661:IPR003594:IPR000005; KEGG: sli:Slin_6436 histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; histidine kinase A domain protein; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Histidine kinase; PFAM: Y_Y_Y domain; Two component regulator propeller; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998389.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR005467:IPR003660:IPR004358:IPR003594:IPR 000014; KEGG: sli:Slin_2346 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box
YP_003998390.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR001789:IPR020441:IPR002197; KEGG: bvu:BVU_2354 two-component system response regulator; PFAM: sigma-54 factor interaction domaiN-containing protein; response regulator receiver; helix-turN-helix Fis-type; SMART: response regulator receiver; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003998391.1	InterPro IPR003838; KEGG: sli:Slin_2348 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003998392.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_2349 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003998393.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sli:Slin_2350 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative ABC transport system ATP-binding protein; PFAM: ABC transporter
YP_003998394.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2351 outer membrane proteiN-like protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane proteiN-like protein; PFAM: Outer membrane efflux protein
YP_003998395.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_2352 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003998396.1	COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR001159:IPR000999:IPR005829:IPR011907; KEGG: dfe:Dfer_3916 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_003998397.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR018201:IPR017568:IPR014030:IPR014031; KEGG: sli:Slin_5149 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_003998398.1	COGs: COG0236 Acyl carrier protein; InterPro IPR009081:IPR006162:IPR003231:IPR006163; KEGG: cpi:Cpin_0363 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003998399.1	COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006269:IPR006218; KEGG: dfe:Dfer_3913 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_003998400.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: chu:CHU_2996 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domaiN-containing protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_003998401.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224:IPR006145; KEGG: dfe:Dfer_3776 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_003998402.1	COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR006235:IPR000277; KEGG: dfe:Dfer_1094 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_003998403.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2987 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase; Domain of unknown function (DUF3471)
YP_003998404.1	SPTR: Putative uncharacterized protein
YP_003998405.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004541:IPR005225:IPR004161:IPR 004160; KEGG: dfe:Dfer_3456 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domaiN-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003998406.1	KEGG: fjo:Fjoh_1594 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3127)
YP_003998407.1	KEGG: sli:Slin_6091 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998408.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR018062:IPR020449:IPR000005; KEGG: dfe:Dfer_3677 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998409.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2866 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003998410.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR018120:IPR006143; KEGG: sli:Slin_1204 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; manually curated; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003998411.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR000897:IPR004390:IPR013822:IPR003593; KEGG: dfe:Dfer_3607 signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_003998412.1	KEGG: sli:Slin_3395 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998413.1	COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR006653:IPR006654:IPR001926; KEGG: phe:Phep_3024 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_003998414.1	COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: sli:Slin_5476 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_003998415.1	COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR001468:IPR013798; KEGG: phe:Phep_4168 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_003998416.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5681 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998417.1	KEGG: fjo:Fjoh_1788 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998418.1	KEGG: sli:Slin_3172 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998419.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR020892; KEGG: dfe:Dfer_3071 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003998420.1	KEGG: sli:Slin_5550 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998421.1	InterPro IPR007165; KEGG: fba:FIC_01173 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: Putative membrane protein; PFAM: Membrane protein of unknown function
YP_003998422.1	COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR008179:IPR002496:IPR021130; KEGG: sli:Slin_5481 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-AMP cyclohydrolase; SPTR: Phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_003998423.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: sli:Slin_3797 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family
YP_003998424.1	KEGG: dfe:Dfer_4025 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998426.1	KEGG: fps:FP0265 hypothetical protein; SPTR: Putative outer membrane protein
YP_003998427.1	KEGG: fps:FP2481 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998428.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003998429.1	KEGG: vfi:VF_1652 methyl-accepting chemotaxis protein; SPTR: Glycoside hydrolase family 25
YP_003998430.1	KEGG: edi:EDI_187050 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998431.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003998432.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003998433.1	KEGG: ath:AT1G21920 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related; SPTR: Putative uncharacterized protein
YP_003998434.1	KEGG: ath:AT5G19020 pentatricopeptide (PPR) repeat-containing protein; SPTR: Uncharacterized protein At5g19025
YP_003998435.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; KEGG: pdi:BDI_2951 2-amino-3-ketobutyrate CoA ligase; SPTR: Possible glycine C-acetyltransferase
YP_003998436.1	SPTR: Putative uncharacterized protein
YP_003998437.1	KEGG: sna:Snas_4085 adenosine deaminase; SPTR: Lipoprotein, putative
YP_003998438.1	KEGG: clo:HMPREF0868_0531 anaerobic ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase
YP_003998439.1	KEGG: pho:PH1339 hypothetical protein; SPTR: Putative uncharacterized protein PH1339
YP_003998440.1	KEGG: psp:PSPPH_0981 HlyD family secretion protein; SPTR: HlyD family secretion protein
YP_003998441.1	KEGG: tva:TVAG_451420 hypothetical protein; SPTR: Exodeoxyribonuclease 7 large subunit
YP_003998442.1	KEGG: vvi:100262057 hypothetical protein LOC100262057; SPTR: Putative uncharacterized protein
YP_003998444.1	KEGG: mch:Mchl_1087 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998445.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003998446.1	KEGG: tet:TTHERM_00382170 cation channel family protein; SPTR: Cation channel family protein
YP_003998447.1	KEGG: bvu:BVU_0830 hypothetical protein; SPTR: Outer membrane ferric hydroxamate receptor FhuA
YP_003998448.1	InterPro IPR006652; KEGG: cme:CMP002C similar to hedgehog protein; PFAM: Kelch repeat type 1-containing protein; SPTR: Ig-like, group 2; PFAM: Kelch motif
YP_003998449.1	InterPro IPR006530; KEGG: phe:Phep_1049 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: YD repeat protein
YP_003998450.1	KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain
YP_003998451.1	KEGG: bth:BT_0513 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998452.1	KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Putative cell wall-associated protein; TIGRFAM: RHS repeat-associated core domain
YP_003998453.1	KEGG: tgu:100232674 hypothetical protein LOC100232674; SPTR: Putative uncharacterized protein
YP_003998454.1	KEGG: bth:BT_2927 cell wall-associated protein precursor; SPTR: YD repeat protein; TIGRFAM: RHS repeat-associated core domain
YP_003998455.1	KEGG: vpo:Kpol_1048p53 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998456.1	KEGG: phe:Phep_1050 YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain
YP_003998457.1	KEGG: cba:CLB_1393 lipoprotein; SPTR: Putative uncharacterized protein
YP_003998459.1	InterPro IPR017936:IPR013740; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Thioredoxin; Protein of unknown function (DUF3738)
YP_003998460.1	InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003998461.1	KEGG: phe:Phep_0952 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; PFAM: SusD family
YP_003998462.1	KEGG: hmo:HM1_0145 multidomain protein with S-layer homology region, ig motif, I-set domain, pkd domain; SPTR: Predicted protein
YP_003998463.1	KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE
YP_003998464.1	KEGG: paa:Paes_2321 transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003998465.1	KEGG: mch:Mchl_1087 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998466.1	InterPro IPR000834; KEGG: sli:Slin_2367 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003998467.1	KEGG: bvu:BVU_0051 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998468.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: bvu:BVU_0052 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Probable RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998469.1	KEGG: bfr:BF2762 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998470.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002347:IPR002198; KEGG: gsu:GSU1603 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein; PFAM: short chain dehydrogenase
YP_003998471.1	InterPro IPR002528; KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_003998472.1	COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; InterPro IPR004433; KEGG: pdi:BDI_1136 2-oxoglutarate decarboxylase and 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carb oxylatesynthase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase
YP_003998473.1	InterPro IPR001173; KEGG: min:Minf_0545 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: SpsA-like protein; PFAM: Glycosyl transferase family 2
YP_003998474.1	COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: sli:Slin_5492 proteinase inhibitor I4 serpin; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; SPTR: Proteinase inhibitor I4 serpin; PFAM: Serpin (serine protease inhibitor)
YP_003998475.1	InterPro IPR005184; KEGG: smf:Smon_0388 protein of unknown function DUF306 MetA and HslJ; PFAM: protein of unknown function DUF306 Meta and HslJ; SPTR: Putative heat shock lipoprotein; PFAM: META domain
YP_003998476.1	COGs: COG0557 Exoribonuclease R; InterProIPR003029:IPR001900:IPR011805:IPR004476:IPR 013223:IPR011129; KEGG: sli:Slin_5873 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; PRIAM: Exoribonuclease II; SMART: Cold shock protein; SPTR: Ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_003998477.1	KEGG: ftn:FTN_0929 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998478.1	KEGG: sli:Slin_4920 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998480.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR003362; KEGG: sli:Slin_4921 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; SPTR: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_003998481.1	KEGG: dfe:Dfer_0051 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998482.1	COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR020904:IPR006368:IPR001509; KEGG: dfe:Dfer_3954 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase
YP_003998483.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cno:NT01CX_1528 glycosyl transferase, group 1 family protein, putative; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_003998484.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR020904:IPR001509; KEGG: cth:Cthe_2558 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-binding protein; PFAM: NAD dependent epimerase/dehydratase family
YP_003998485.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR013445:IPR001509; KEGG: bfs:BF2602 LPS biosynthesis related DNTP-hexose dehydratase-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: CDP-glucose-4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: CDP-glucose 4,6-dehydratase
YP_003998486.1	COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR013446:IPR005835; KEGG: bfs:BF2603 LPS biosynthesis-related sugar-phosphate nucleotidyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate cytidylyltransferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase
YP_003998487.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: hmo:HM1_1228 glycosyl transferase, group 2 family protein, putative; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 1/2 family protein; PFAM: Glycosyl transferase family 2
YP_003998488.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bcr:BCAH187_A5441 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Putative glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_003998489.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR018357:IPR001451; KEGG: dfe:Dfer_0057 transferase hexapeptide repeat containing protein; PFAM: transferase hexapeptide repeat containing protein; SPTR: Transferase hexapeptide repeat containing protein; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003998490.1	InterPro IPR018062; KEGG: bvu:BVU_2949 polysaccharide polymerase; SPTR: Putative uncharacterized protein
YP_003998491.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_00366 hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003998492.1	KEGG: dfe:Dfer_0060 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide pyruvyl transferase
YP_003998493.1	InterPro IPR003856; KEGG: sli:Slin_4936 lipopolysaccharide biosynthesis protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein
YP_003998494.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: phe:Phep_3949 polysaccharide export protein; PFAM: Soluble ligand binding domain; polysaccharide export protein; SPTR: Polysaccharide export protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain
YP_003998495.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR003524:IPR018481; KEGG: sli:Slin_4740 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_003998496.1	KEGG: pdi:BDI_0581 hypothetical protein; SPTR: Cyclic nucleotide-binding domain protein
YP_003998497.1	KEGG: dfe:Dfer_3648 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998498.1	InterPro IPR001845; KEGG: fjo:Fjoh_2987 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: ArsR family regulatory protein; PFAM: Bacterial regulatory protein, arsR family
YP_003998499.1	KEGG: fjo:Fjoh_2988 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998500.1	KEGG: fjo:Fjoh_2990 protein tyrosine phosphatase; SPTR: Protein tyrosine phosphatase
YP_003998501.1	COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: fjo:Fjoh_2991 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: ACR3 family arsenical resistance-3 transporter; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein
YP_003998502.1	COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicilliN-binding protein 4); InterPro IPR000667; KEGG: dfe:Dfer_3782 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; SPTR:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; PFAM: D-alanyl-D-alanine carboxypeptidase; D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
YP_003998503.1	COGs: COG4299 conserved hypothetical protein; KEGG: fjo:Fjoh_4820 hypothetical protein; SPTR: Uncharacterized protein; PFAM: Protein of unknown function (DUF1624)
YP_003998504.1	COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR005151:IPR001478; KEGG: dfe:Dfer_3921 carboxyl-terminal protease; PFAM: peptidase S41; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; TIGRFAM: C-terminal peptidase (prc)
YP_003998505.1	COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: zpr:ZPR_4171 lipoprotein; PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Putative lipoprotein; PFAM: F5/8 type C domain; Alpha-L-fucosidase
YP_003998506.1	InterPro IPR010496; KEGG: dfe:Dfer_3235 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: PA14 domain; Domain of Unknown Function (DUF1080)
YP_003998507.1	InterPro IPR009056:IPR002324:IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I
YP_003998508.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_2917 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel
YP_003998509.1	COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR005940:IPR017459:IPR000312; KEGG: dfe:Dfer_3792 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_003998510.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017911:IPR017871:IPR003593; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATP-binding protein of ABC transporter; PFAM: ABC transporter
YP_003998511.1	KEGG: cpi:Cpin_5838 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_003998512.1	InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); Uncharacterised protein family UPF0565
YP_003998513.1	COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021; KEGG: fba:FIC_01092 prophage LambdaCh01, nuclease domain protein; PFAM: nuclease (SNase domaiN-containing protein); SMART: nuclease (SNase domaiN-containing protein); SPTR: Prophage LambdaCh01, nuclease domain protein; PFAM: Staphylococcal nuclease homologue
YP_003998514.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1196 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_003998515.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610:IPR001667:IPR003156; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_003998516.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410:IPR014043; KEGG: chu:CHU_2469 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; SPTR: [Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_003998517.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: coc:Coch_0582 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_003998518.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fps:FP0296 outer membrane efflux protein precursor; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003998519.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: fps:FP0295 ABC transporter membrane fusion efflux protein; PFAM: biotin/lipoyl attachment domaiN-containing protein; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein
YP_003998520.1	COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525; KEGG: fps:FP0294 ABC transporter permease; PFAM: ABC-2 type transporter; SPTR: ABC family transporter permease protein; PFAM: ABC-2 type transporter
YP_003998521.1	COGs: COG2017 Galactose mutarotase; InterPro IPR018052:IPR008183; KEGG: sli:Slin_1235 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; PFAM: Aldose 1-epimerase; TIGRFAM: galactose mutarotase
YP_003998522.1	COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: cpi:Cpin_4728 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_003998523.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: sli:Slin_1236 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase
YP_003998524.1	COGs: COG2160 L-arabinose isomerase; InterPro IPR003762; KEGG: sli:Slin_1238 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: L-arabinose isomerase; PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain
YP_003998525.1	COGs: COG1069 Ribulose kinase; InterPro IPR005929:IPR018484:IPR018485; KEGG: sli:Slin_1239 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase
YP_003998526.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2399 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_003998527.1	COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: zpr:ZPR_2145 alpha-L-arabinofuranosidase A precursor; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase A; PFAM: Alpha-L-arabinofuranosidase C-terminus
YP_003998528.1	COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase C-terminus
YP_003998529.1	COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: fjo:Fjoh_3876 hypothetical protein; PFAM: protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680)
YP_003998530.1	InterPro IPR019563; KEGG: rmr:Rmar_0476 alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97; SPTR: Alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97
YP_003998531.1	InterPro IPR012944; KEGG: cpi:Cpin_7233 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003998532.1	COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_0715 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein
YP_003998533.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_0716 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1
YP_003998534.1	KEGG: bth:BT_3686 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998535.1	InterPro IPR012910; KEGG: dfe:Dfer_4856 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor
YP_003998536.1	KEGG: dfe:Dfer_4855 membrane protein; SPTR: Membrane protein
YP_003998537.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_3656 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998538.1	KEGG: hne:HNE_2713 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
YP_003998539.1	KEGG: dfe:Dfer_1203 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998540.1	COGs: COG4277 DNA-binding protein with the Helix-hairpiN-helix motif; InterPro IPR000532:IPR007197; KEGG: phe:Phep_0194 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily
YP_003998541.1	InterPro IPR006710; KEGG: zpr:ZPR_0914 beta-glucanase precursor; PFAM: glycoside hydrolase family 43; SPTR: Beta-glucanase; PFAM: Glycosyl hydrolases family 43
YP_003998542.1	COGs: COG4289 conserved hypothetical protein; InterPro IPR016624; KEGG: sli:Slin_1470 hypothetical protein; PFAM: Uncharacterised conserved protein UCP014753; SPTR: Uncharacterized conserved protein UCP014753; PFAM: Uncharacterized protein conserved in bacteria (DUF2264)
YP_003998543.1	COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: bth:BT_3687 hypothetical protein; PFAM: glycosyl hydrolase family 88; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88
YP_003998544.1	InterPro IPR012944; KEGG: bvu:BVU_0510 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative lipoprotein; PFAM: SusD family
YP_003998545.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR005829:IPR012910:IPR000531; KEGG: bvu:BVU_0511 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998546.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR004358:IPR 011110:IPR011123:IPR003661:IPR003594:IPR000005; KEGG: sli:Slin_6436 histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; histidine kinase A domain protein; response regulator receiver; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Histidine kinase; PFAM: Y_Y_Y domain; Two component regulator propeller; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998547.1	InterPro IPR004843; KEGG: fjo:Fjoh_4173 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: CalcineuriN-like phosphoesterase; PFAM: CalcineuriN-like phosphoesterase
YP_003998548.1	InterPro IPR001387; KEGG: bfs:BF0343 DNA-binding protein; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Putative DNA-binding protein; PFAM: Helix-turN-helix
YP_003998549.1	InterPro IPR009241; KEGG: chu:CHU_2426 hypothetical protein; PFAM: protein of unknown function DUF891; SPTR: Putative uncharacterized protein; PFAM: Phage derived protein Gp49-like (DUF891)
YP_003998550.1	COGs: COG0474 Cation transport ATPase; InterProIPR018303:IPR001757:IPR000695:IPR004014:IPR 008250:IPR005834:IPR006068; KEGG: fjo:Fjoh_4474 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003998551.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003998552.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003998553.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_5161 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003998554.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Putative two-component system sensor protein, no kinase domain; PFAM: Histidine kinase
YP_003998555.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: fps:FP0220 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_003998556.1	COGs: COG0525 Valyl-tRNA synthetase; InterProIPR001412:IPR019754:IPR002300:IPR013155:IPR 019499:IPR002303; KEGG: dfe:Dfer_4095 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodoN-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); AnticodoN-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_003998557.1	InterPro IPR007492; KEGG: dfe:Dfer_1502 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding domain
YP_003998558.1	COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: fba:FIC_02123 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Probable transmembrane transporter; PFAM: Major Facilitator Superfamily
YP_003998559.1	COGs: COG2262 GTPase; InterPro IPR016496:IPR006073:IPR002917:IPR005225; KEGG: sli:Slin_6253 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding proten HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_003998560.1	COGs: COG0691 tmRNA-binding protein; InterPro IPR020081:IPR000037; KEGG: dfe:Dfer_3480 SsrA-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_003998561.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR020922:IPR002637; KEGG: bvu:BVU_1146 deoxyribonucleoside-triphosphatase; PFAM: Ham1 family protein; SPTR: Nucleoside-triphosphatase; TIGRFAM: noN-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: noN-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_003998562.1	COGs: COG0216 Protein chain release factor A; InterPro IPR004373:IPR005139:IPR000352; KEGG: sli:Slin_4995 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_003998563.1	KEGG: sli:Slin_5362 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998564.1	KEGG: dfe:Dfer_1654 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998565.1	InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_003998566.1	InterPro IPR019734:IPR013026; KEGG: sli:Slin_5690 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein
YP_003998567.1	COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006223:IPR006222:IPR013977; KEGG: dfe:Dfer_4550 glycine cleavage system aminomethyltransferase T; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; SPTR: Aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein
YP_003998568.1	COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890; KEGG: chu:CHU_2494 hypothetical protein; PFAM: alpha-2-macroglobulin domain protein; SPTR: Putative uncharacterized protein; PFAM: MG2 domain; Alpha-2-macroglobulin family
YP_003998569.1	COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: protein of unknown function DUF179; SPTR: UPF0301 protein M23134_01239; PFAM: Uncharacterized ACR, COG1678
YP_003998570.1	COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: sli:Slin_3483 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003998571.1	COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; InterPro IPR005338; KEGG: sli:Slin_5693 protein of unknown function UPF0075; PFAM: protein of unknown function UPF0075; SPTR: Anhydro-N-acetylmuramic acid kinase; PFAM: Uncharacterised protein family (UPF0075)
YP_003998572.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900:IPR017896; KEGG: sli:Slin_5543 protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Putative uncharacterized protein
YP_003998573.1	InterPro IPR000551:IPR010093; KEGG: cyt:cce_2689 hypothetical protein; PFAM: regulatory protein MerR; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family
YP_003998574.1	KEGG: pna:Pnap_3977 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998575.1	InterPro IPR002110:IPR020683; KEGG: dfe:Dfer_1667 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat
YP_003998576.1	KEGG: dfe:Dfer_1666 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2271)
YP_003998577.1	COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR008254:IPR008333:IPR001433; KEGG: dfe:Dfer_1665 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Oxidoreductase NAD-binding domain
YP_003998578.1	COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_1664 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; SPTR: ApbE family lipoprotein; manually curated; PFAM: ApbE family
YP_003998579.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000123:IPR000477:IPR013597; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase)
YP_003998580.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: cpi:Cpin_5181 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003998581.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR000731:IPR004764; KEGG: chu:CHU_0538 AcrB/AcrD family multidrug resistance protein; PFAM: acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; manually curated; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003998582.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0537 HlyD family multidrug resistance protein; PFAM: secretion protein HlyD family protein; SPTR: Multidrug resistance protein; HlyD family secretion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003998583.1	KEGG: sbi:SORBI_07g001792 hypothetical protein; SPTR: Putative uncharacterized protein Sb07g001792
YP_003998584.1	KEGG: spu:575218 similar to proline-rich transmembrane protein 3
YP_003998585.1	COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: phe:Phep_2688 luciferase-like monooxygenase; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like monooxygenase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family
YP_003998586.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR016833; KEGG: fjo:Fjoh_3838 Na+-dependent transporter-like protein; SPTR: Probable lipoprotein transmembrane
YP_003998587.1	COGs: COG0777 Acetyl-CoA carboxylase beta subunit; InterPro IPR000438:IPR011762:IPR000022; KEGG: dfe:Dfer_3482 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_003998588.1	COGs: COG0260 Leucyl aminopeptidase; InterPro IPR000819; KEGG: dfe:Dfer_2847 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; SPTR: Leucyl aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain
YP_003998589.1	COGs: COG1403 Restriction endonuclease; InterPro IPR003615:IPR002711; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease
YP_003998590.1	COGs: COG0153 Galactokinase; InterPro IPR006206:IPR000705:IPR006204:IPR013750; KEGG: sli:Slin_1000 GHMP kinase domain protein; PFAM: GHMP kinase domain protein; GHMP kinase; PRIAM: Galactokinase; SPTR: GHMP kinase domain protein; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain
YP_003998591.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: hch:HCH_00764 small-conductance mechanosensitive channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Small-conductance mechanosensitive channel; PFAM: Mechanosensitive ion channel
YP_003998592.1	COGs: COG0539 Ribosomal protein S1; InterPro IPR000110:IPR003029; KEGG: dfe:Dfer_3478 30S ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: RNA binding S1 domain protein; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_003998593.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: sli:Slin_1434 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_003998594.1	KEGG: tde:TDE0221 hypothetical protein; SPTR: Conserved domain protein
YP_003998595.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: sli:Slin_5392 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; beta-lactamase; SPTR: Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase family 3 N terminal domain; Beta-lactamase
YP_003998596.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: fba:FIC_01338 hypothetical protein; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; PFAM: Prolyl oligopeptidase family
YP_003998597.1	KEGG: chu:CHU_3167 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467)
YP_003998598.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: zpr:ZPR_0899 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_003998599.1	InterPro IPR010496; KEGG: sli:Slin_4651 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003998600.1	COGs: COG3669 Alpha-L-fucosidase; InterPro IPR016286:IPR000933; KEGG: zpr:ZPR_4172 exported hydrolase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Putative exporte hydrolase; PFAM: Alpha-L-fucosidase
YP_003998601.1	KEGG: vpo:Kpol_534p2 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998602.1	InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Putative uncharacterized protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
YP_003998603.1	COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: phe:Phep_0013 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_003998604.1	InterPro IPR013026; KEGG: dfe:Dfer_3805 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein
YP_003998605.1	KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998606.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR020595:IPR004416:IPR002218; KEGG: dfe:Dfer_3802 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; SPTR: Glucose inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_003998607.1	COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998608.1	COGs: COG0708 Exonuclease III; InterProIPR020847:IPR020848:IPR004808:IPR005135:IPR 000097; KEGG: chu:CHU_3497 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_003998609.1	KEGG: dfe:Dfer_3789 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998610.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: pdi:BDI_3692 amidophosphoribosyl-transferase; PFAM: phosphoribosyltransferase; SPTR: Competence protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_003998611.1	InterPro IPR000834; KEGG: rbi:RB2501_13074 hypothetical protein; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003998612.1	COGs: COG0824 thioesterase; KEGG: fba:FIC_02442 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998613.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterProIPR014001:IPR001650:IPR007527:IPR014021:IPR 000330; KEGG: dat:HRM2_45400 helicase, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Helicase, Snf2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_003998614.1	COGs: COG1533 DNA repair photolyase; InterPro IPR006638:IPR007197; KEGG: dfe:Dfer_4818 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_003998615.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: vsp:VS_1753 hypothetical protein; PFAM: Patatin; SPTR: Alpha-beta hydrolase family esterase; PFAM: PatatiN-like phospholipase
YP_003998616.1	InterPro IPR003347; KEGG: gfo:GFO_3567 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998617.1	KEGG: dfe:Dfer_1668 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998618.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1669 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: Protein of unknown function (DUF2012); TonB-dependent Receptor Plug Domain
YP_003998619.1	COGs: COG1197 TranscriptioN-repair coupling factor (superfamily II helicase); InterProIPR014001:IPR001650:IPR014021:IPR003711:IPR 011545:IPR005118:IPR004576; KEGG: dfe:Dfer_3695 transcriptioN-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: TranscriptioN-repair coupling factor; TIGRFAM: transcriptioN-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcriptioN-repair coupling factor (mfd)
YP_003998620.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532:IPR019868; KEGG: sli:Slin_5515 gliding motility-associated lipoprotein GldJ; PFAM: protein of unknown function DUF323; SPTR: Gliding motility-associated lipoprotein GldJ; TIGRFAM: gliding motility-associated lipoprotein GldJ; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ
YP_003998621.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998622.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR015590; KEGG: cpi:Cpin_1289 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Possible glyceraldehyde-3-phosphate dehydrogenase (NADP(+)); PFAM: Aldehyde dehydrogenase family
YP_003998623.1	KEGG: cpi:Cpin_0721 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998625.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: chu:CHU_3379 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_003998626.1	COGs: COG0080 Ribosomal protein L11; InterProIPR020785:IPR000911:IPR020784:IPR020783:IPR 006519; KEGG: dfe:Dfer_3453 50S ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_003998627.1	COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: sli:Slin_4480 ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_003998628.1	COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: dfe:Dfer_3451 ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: 50S ribosomal protein L10; PFAM: Ribosomal protein L10
YP_003998629.1	COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: dfe:Dfer_3450 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_003998630.1	manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998631.1	KEGG: scl:sce6667 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998632.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR005467:IPR011495:IPR003594; KEGG: cpi:Cpin_4236 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SPTR: Sensory transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003998633.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cat:CA2559_08681 transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Transcriptional regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003998634.1	COGs: COG1520 FOG: WD40-like repeat; InterPro IPR000601:IPR018391:IPR002372; KEGG: mac:MA4589 cell surface protein; PFAM: PKD domain containing protein; Pyrrolo-quinoline quinone repeat-containing protein; SMART: PKD domain containing protein; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Cell surface protein; PFAM: PQQ enzyme repeat; PKD domain
YP_003998635.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007121:IPR010243:IPR007644:IPR007642:IPR 007645:IPR019462:IPR007120:IPR007641; KEGG: sli:Slin_4477 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_003998636.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR012754:IPR006592:IPR007080:IPR000722:IPR 007066:IPR007083:IPR007081; KEGG: dfe:Dfer_3448 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_003998637.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5746 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; PFAM: LytTr DNA-binding domain
YP_003998638.1	KEGG: hvo:HVO_A0613 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2306)
YP_003998639.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_0693 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998640.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: cpi:Cpin_0694 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998641.1	KEGG: afv:AFLA_059470 LipA and NB-ARC domain protein; SPTR: Putative uncharacterized protein
YP_003998642.1	KEGG: srm:SRM_00331 conserved hypothetical protein, secreted; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998643.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: srm:SRM_00330 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998644.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR001411:IPR011701:IPR004638; KEGG: fjo:Fjoh_4805 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; Multidrug resistance protein
YP_003998645.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2586 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_003998646.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900:IPR016166:IPR006094:IPR004113; KEGG: dfe:Dfer_3077 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: D-lactate dehydrogenase (Cytochrome); PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain
YP_003998647.1	KEGG: dfe:Dfer_4790 glycosyltransferase; SPTR: Putative glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_003998648.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: chu:CHU_2768 membrane export protein; PFAM: polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_003998649.1	KEGG: bhy:BHWA1_02264 methyltransferase; SPTR: Methyltransferase, FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_003998650.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fps:FP1376 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003998652.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004838:IPR001176:IPR004839; KEGG: dfe:Dfer_3724 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003998653.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: sli:Slin_4428 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_003998654.1	KEGG: sli:Slin_4737 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998655.1	COGs: COG0768 Cell division protein FtsI/penicilliN-binding protein 2; InterPro IPR005311:IPR001460; KEGG: sli:Slin_4738 peptidoglycan glycosyltransferase; PFAM: penicilliN-binding protein transpeptidase; PenicilliN-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; PenicilliN-binding Protein dimerisation domain
YP_003998656.1	InterPro IPR000834; KEGG: sli:Slin_5441 hypothetical protein; PFAM: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003998657.1	KEGG: sli:Slin_0266 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998658.1	KEGG: rbi:RB2501_01730 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998659.1	COGs: COG0265 TrypsiN-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001940:IPR001254; KEGG: dfe:Dfer_3918 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_003998660.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dfe:Dfer_3917 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_003998661.1	KEGG: sli:Slin_5545 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998662.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089:IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5641 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003998664.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018062:IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003998665.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638:IPR004393; KEGG: phe:Phep_1198 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_003998666.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3842 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase family 2
YP_003998667.1	KEGG: dfe:Dfer_3843 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998668.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002035:IPR002881; KEGG: sli:Slin_6105 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_003998669.1	KEGG: chu:CHU_2654 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998670.1	COGs: COG0531 Amino acid transporter; InterPro IPR000358:IPR002293:IPR004841; KEGG: fjo:Fjoh_1930 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3
YP_003998671.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR012080:IPR000534:IPR012280:IPR005986; KEGG: sli:Slin_5364 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_003998672.1	InterPro IPR000620; KEGG: lbl:LBL_0849 permease; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Permease; PFAM: EamA-like transporter family
YP_003998673.1	KEGG: dfe:Dfer_5279 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998674.1	KEGG: dfe:Dfer_3341 protein of unknown function DUF1486; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related
YP_003998675.1	InterPro IPR000182; KEGG: sli:Slin_5422 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_003998676.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: dfe:Dfer_3343 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: CarboN-nitrogen hydrolase
YP_003998677.1	KEGG: dfe:Dfer_5123 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998678.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_0675 cellulase; PFAM: polysaccharide deacetylase; SPTR: Cellulase; PFAM: Polysaccharide deacetylase
YP_003998679.1	KEGG: sli:Slin_1183 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998680.1	KEGG: dfe:Dfer_4156 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998681.1	COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR004810:IPR002912:IPR002376; KEGG: sli:Slin_5699 formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; SPTR: Formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase
YP_003998682.1	COGs: COG1160 GTPase; InterPro IPR016484:IPR006073:IPR002917:IPR005225; KEGG: sli:Slin_5226 ribosome-associated GTPase EngA; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_003998683.1	InterPro IPR000620; KEGG: sli:Slin_1431 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family
YP_003998684.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR003439:IPR017940:IPR 001140; KEGG: sli:Slin_6513 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003998685.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_1888 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41
YP_003998686.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544; KEGG: sli:Slin_1098 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chaiN-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_003998687.1	InterPro IPR001701; KEGG: phe:Phep_0675 cellulase; PFAM: glycoside hydrolase family 9; SPTR: Glycoside hydrolase family 9; PFAM: Glycosyl hydrolase family 9; N-terminal ig-like domain of cellulase
YP_003998688.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: sli:Slin_6028 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Phosphoesterase RecJ domain protein; PFAM: DHH family; DHHA1 domain
YP_003998689.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_4380 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003998690.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_3628 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003998691.1	manually curated; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase)
YP_003998692.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR019818:IPR004429:IPR001804; KEGG: dfe:Dfer_3671 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_003998693.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR002034:IPR000891:IPR013709; KEGG: dfe:Dfer_3672 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domaiN-containing protein; SPTR: Pyruvate carboxyltransferase; manually curated; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain
YP_003998694.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR004431:IPR000573; KEGG: dfe:Dfer_3673 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domaiN-containing protein; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_003998695.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR018136:IPR004430:IPR001030; KEGG: dfe:Dfer_3675 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domaiN-containing protein; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_003998696.1	InterPro IPR000163:IPR001107; KEGG: fba:FIC_00909 transmembrane protein; PFAM: band 7 protein; SPTR: Putative transmembrane protein; PFAM: SPFH domain / Band 7 family
YP_003998697.1	InterPro IPR003342; KEGG: saf:SULAZ_0188 dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: glycosyl transferase family 39; SPTR: Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003998698.1	COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR005829:IPR000757; KEGG: cpi:Cpin_6737 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; PRIAM: Licheninase; SPTR: Glycoside hydrolase family 16; PFAM: Glycosyl hydrolases family 16
YP_003998699.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR001714:IPR000994:IPR002467; KEGG: cpi:Cpin_5698 methionine aminopeptidase, type I; PFAM: peptidase M24; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_003998700.1	KEGG: brm:Bmur_0975 response regulator receiver protein; SPTR: Putative uncharacterized protein
YP_003998701.1	KEGG: gur:Gura_3881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998702.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_6008 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_003998703.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_1001 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003998704.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003998705.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_6011 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003998706.1	COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: dfe:Dfer_4987 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_003998707.1	COGs: COG0225 Peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: phe:Phep_0476 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_003998708.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: dfe:Dfer_4584 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; PFAM: HIT domain
YP_003998709.1	KEGG: sli:Slin_5446 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_003998710.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR005215; KEGG: dfe:Dfer_4576 trigger factor; PFAM: trigger factor domaiN-containing protein; SPTR: Trigger factor; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor
YP_003998711.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR018215:IPR001907; KEGG: dfe:Dfer_4574 endopeptidase Clp; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_003998712.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR002078:IPR004487:IPR003593:IPR010603:IPR 013093:IPR019489; KEGG: dfe:Dfer_4573 sigma 54 interacting domain protein; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: Sigma 54 interacting domain protein; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_003998713.1	COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321; KEGG: dfe:Dfer_3571 peptidase S58 DmpA; PFAM: peptidase S58 DmpA; SPTR: Peptidase S58 DmpA; PFAM: Peptidase family S58
YP_003998714.1	COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102; KEGG: cpi:Cpin_6173 glycoside hydrolase family 2 sugar binding; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; SPTR: Glycoside hydrolase family 2 sugar binding; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain
YP_003998715.1	KEGG: sli:Slin_3609 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998716.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR002195:IPR006680; KEGG: sli:Slin_5385 amidohydrolase; PFAM: amidohydrolase; SPTR: Allantoinase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_003998717.1	KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998718.1	COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: dfe:Dfer_3871 protein of unknown function DUF752; PFAM: protein of unknown function DUF752; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF752)
YP_003998719.1	COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: protein of unknown function UCP012535; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317)
YP_003998720.1	KEGG: sli:Slin_1890 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998721.1	COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_1891 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase
YP_003998722.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterProIPR014001:IPR001650:IPR014021:IPR011545:IPR 005259; KEGG: dfe:Dfer_3377 primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_003998723.1	KEGG: dfe:Dfer_4242 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1469)
YP_003998724.1	InterPro IPR019734:IPR017936:IPR000866; KEGG: zpr:ZPR_3529 AhpC/TSA family protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: AhpC/TSA family protein; PFAM: AhpC/TSA family
YP_003998725.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109:IPR005279; KEGG: phe:Phep_2903 amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: Amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_003998726.1	KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998727.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020904:IPR002347:IPR002198; KEGG: pae:PA2554 short-chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Probable short-chain dehydrogenase; PFAM: short chain dehydrogenase
YP_003998728.1	COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR014758:IPR002547:IPR015413:IPR002304:IPR 004495; KEGG: sli:Slin_1471 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domaiN-containing protein; SPTR: Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetases class I (M); AnticodoN-binding domain; Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_003998729.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: pzu:PHZ_c1068 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Sulfate/thiosulfate import ATP-binding protein CysA; PFAM: ABC transporter
YP_003998730.1	COGs: COG0308 Aminopeptidase N; KEGG: smt:Smal_1028 hypothetical protein; SPTR: Aminopeptidase N
YP_003998731.1	KEGG: cpi:Cpin_5007 methyltransferase type 12; SPTR: Methyltransferase type 12
YP_003998732.1	COGs: COG0782 Transcription elongation factor; InterPro IPR018151:IPR001437:IPR006359; KEGG: dfe:Dfer_4815 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domaiN-containing protein; SPTR: Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_003998733.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR012999:IPR013027:IPR000815:IPR004099:IPR 006258; KEGG: sli:Slin_5752 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003998734.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: sli:Slin_5703 transcriptional regulator; PFAM: AAA-4 family protein; SPTR: Conserved protein; PFAM: Divergent AAA domain
YP_003998735.1	KEGG: sli:Slin_5701 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2795)
YP_003998736.1	COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: bvu:BVU_3897 copper homeostasis protein; PFAM: CutC family protein; SPTR: Uncharacterized protein involved in copper resistance; PFAM: CutC family
YP_003998737.1	KEGG: sli:Slin_6454 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998738.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: dfe:Dfer_4023 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_003998739.1	COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR001295:IPR012135:IPR005719; KEGG: dfe:Dfer_3190 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase; manually curated; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2
YP_003998740.1	COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: phe:Phep_0698 protein of unknown function UPF0126; PFAM: Uncharacterised protein family UPF0126; SPTR: Putative uncharacterized protein; PFAM: UPF0126 domain
YP_003998741.1	InterPro IPR002514; KEGG: sli:Slin_6765 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Putative transcriptional regulator, Fis family protein; PFAM: Transposase
YP_003998742.1	InterPro IPR001584; KEGG: sli:Slin_6766 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Putative transposase, ISSmu1; PFAM: Integrase core domain
YP_003998743.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR005829:IPR001789:IPR001867; KEGG: dfe:Dfer_3651 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998744.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: dfe:Dfer_4094 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998745.1	KEGG: sli:Slin_3576 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998746.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: dfe:Dfer_4016 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Putative iroN-sulfur-binding reductase; PFAM: Cysteine-rich domain
YP_003998747.1	KEGG: gfo:GFO_2267 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998748.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR017871:IPR003439:IPR004602; KEGG: dfe:Dfer_3281 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_003998749.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR013229:IPR012910:IPR000531; KEGG: dfe:Dfer_3569 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; PEGA domain protein; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; PEGA domain
YP_003998750.1	KEGG: dfe:Dfer_3570 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998751.1	COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: dfe:Dfer_4549 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase
YP_003998752.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR001261:IPR002933:IPR011650; KEGG: cpi:Cpin_6551 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Peptidase M20; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_003998753.1	KEGG: cbk:CLL_A1406 regulatory protein VanR; SPTR: Putative uncharacterized protein
YP_003998754.1	COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720:IPR003305; KEGG: cpi:Cpin_5739 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase domain protein; Carbohydrate-binding CenC domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase domain protein; PFAM: Carbohydrate binding domain; Alpha-L-arabinofuranosidase C-terminus
YP_003998755.1	COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: fjo:Fjoh_3109 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; SPTR: Candidate beta-D-/alpha-L-glycosidase; Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43
YP_003998756.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR018357:IPR001451:IPR020019; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_003998757.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176:IPR004839; KEGG: dfe:Dfer_2834 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aromatic aminotransferase; PFAM: Aminotransferase class I and II
YP_003998758.1	COGs: COG4989 oxidoreductase; InterPro IPR020471:IPR001395; KEGG: dfe:Dfer_4106 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003998759.1	COGs: COG0407 UroporphyrinogeN-III decarboxylase; InterPro IPR000257:IPR006361; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_003998760.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006690:IPR006664:IPR006665:IPR011659; KEGG: sli:Slin_5600 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_003998761.1	COGs: COG0316 conserved hypothetical protein; InterPro IPR017870:IPR000361:IPR016092; KEGG: sli:Slin_5822 iroN-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: IroN-sulfur cluster assembly accessory protein; TIGRFAM: iroN-sulfur cluster assembly accessory protein; PFAM: IroN-sulphur cluster biosynthesis; TIGRFAM: IroN-sulfur cluster assembly accessory protein
YP_003998762.1	COGs: COG3876 conserved hypothetical protein; InterPro IPR018247:IPR008302; KEGG: cpi:Cpin_2120 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1343)
YP_003998763.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_2362 sterol desaturase-like protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; PFAM: Fatty acid hydroxylase superfamily
YP_003998764.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor
YP_003998765.1	COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR000343:IPR015895:IPR006151:IPR015896; KEGG: sli:Slin_3619 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; PRIAM: Glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_003998766.1	InterPro IPR004714; KEGG: phe:Phep_2483 cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, Cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type
YP_003998767.1	COGs: COG2217 Cation transport ATPase; InterProIPR020834:IPR018303:IPR001757:IPR001756:IPR 006121:IPR008250:IPR005834; KEGG: fps:FP1153 cytochrome cbb3 oxidase maturation protein CcoI; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: E1-E2 ATPase subfamily, putative; PFAM: E1-E2 ATPase; Putative metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003998768.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR000014:IPR003661:IPR003594:IPR004358:IPR 005467:IPR000700:IPR013767; KEGG: dfe:Dfer_5317 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003998769.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001789:IPR000595:IPR001808:IPR012318; KEGG: dfe:Dfer_5316 transcriptional regulator, Crp/Fnr family; PFAM: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; SMART: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; SPTR: Transcriptional regulator, Crp/Fnr family; manually curated; PFAM: Bacterial regulatory proteins, crp family; Response regulator receiver domain; Cyclic nucleotide-binding domain
YP_003998770.1	COGs: COG2836 conserved hypothetical protein; KEGG: fjo:Fjoh_2541 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998771.1	KEGG: cpi:Cpin_0685 FixH family protein; SPTR: FixH family protein; PFAM: FixH
YP_003998772.1	COGs: COG0348 Polyferredoxin; InterPro IPR017900:IPR017896:IPR014116; KEGG: chu:CHU_1141 ferredoxin; SPTR: Cytochrome c oxidase accessory protein CcoG; TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG
YP_003998773.1	InterPro IPR009056:IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome-c oxidase FixP chain; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III
YP_003998774.1	KEGG: dfe:Dfer_5322 cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cbb3-type cytochrome oxidase component FixQ
YP_003998775.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR009056:IPR003468:IPR004677; KEGG: phe:Phep_2484 bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; SPTR: Cytochrome c oxidase, Cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I
YP_003998776.1	KEGG: dfe:Dfer_3951 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998777.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR000103:IPR013027; KEGG: gfo:GFO_0376 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulfde oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003998778.1	KEGG: dfe:Dfer_2492 acyl-protein synthetase; SPTR: Acyl-protein synthetase; PFAM: Acyl-protein synthetase, LuxE
YP_003998779.1	KEGG: dfe:Dfer_2491 hypothetical protein; SPTR: Lipoprotein, putative
YP_003998780.1	COGs: COG2355 ZN-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: rmr:Rmar_0827 membrane dipeptidase; PFAM: peptidase M19 renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Putative periplasmic dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19)
YP_003998781.1	COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR016129:IPR012020; KEGG: sli:Slin_5174 alpha/beta hydrolase fold protein; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_003998782.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR020082:IPR000043:IPR015878; KEGG: sli:Slin_4338 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_003998783.1	COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795:IPR004161:IPR000640:IPR005225:IPR 006298; KEGG: dfe:Dfer_3399 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domaiN-containing protein; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_003998784.1	InterPro IPR000962; KEGG: sli:Slin_5647 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger
YP_003998785.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; InterProIPR020003:IPR005722:IPR003593:IPR004100:IPR 000194:IPR000793; KEGG: sli:Slin_5125 ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_003998786.1	COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: dfe:Dfer_3764 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YP_003998787.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: fba:FIC_01513 UDP-glucose 4-epimerase related protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase related protein; PFAM: NAD dependent epimerase/dehydratase family
YP_003998788.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839:IPR011282; KEGG: fba:FIC_00804 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase
YP_003998789.1	COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_5278 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase
YP_003998790.1	KEGG: tcr:509275.20 muciN-associated surface protein (MASP); SPTR: MuciN-associated surface protein (MASP), putative
YP_003998791.1	KEGG: zpr:ZPR_3109 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998792.1	COGs: COG1200 RecG-like helicase; InterProIPR014001:IPR001650:IPR014021:IPR004365:IPR 011545:IPR004609; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; OB-fold nucleic acid binding domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_003998793.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_6639 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003998794.1	InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_4224 TonB-dependent receptor Plug domain protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003998795.1	InterPro IPR012944; KEGG: zpr:ZPR_4223 outer membrane protein probably involved in nutrient binding; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein probably involved in nutrient binding; PFAM: SusD family
YP_003998796.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR005227:IPR006641; KEGG: sli:Slin_5430 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: Putative Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF
YP_003998797.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5951 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003998798.1	InterPro IPR018299; KEGG: fba:FIC_02038 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998799.1	COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR001750:IPR010096; KEGG: sli:Slin_5946 protoN-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain N
YP_003998800.1	COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR001750:IPR010227; KEGG: dfe:Dfer_3897 protoN-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain M
YP_003998801.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR003916:IPR018393:IPR001516:IPR001750:IPR 003945; KEGG: dfe:Dfer_3898 protoN-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain L
YP_003998802.1	COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: sli:Slin_5943 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_003998803.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520; KEGG: dfe:Dfer_3900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; PFAM: Exonuclease
YP_003998804.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR004358:IPR005467; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003998805.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; KEGG: phe:Phep_0028 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domaiN-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-acyl-carrier-protein synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_003998806.1	InterPro IPR000534; KEGG: afl:Aflv_1966 predicted nucleoside-diphosphate-sugar epimerase; PFAM: Semialdehyde dehydrogenase NAD - binding; SPTR: Semialdehyde dehydrogenase NAD-binding; PFAM: Semialdehyde dehydrogenase, NAD binding domain
YP_003998807.1	COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: sli:Slin_5014 alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37; PRIAM: Alpha,alpha-trehalase; SPTR: Alpha,alpha-trehalase; PFAM: Trehalase
YP_003998808.1	COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: sli:Slin_2441 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase family
YP_003998809.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904:IPR002347:IPR002198; KEGG: dfe:Dfer_2713 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003998810.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006095:IPR014362:IPR006097:IPR006096; KEGG: sli:Slin_5648 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_003998811.1	KEGG: chu:CHU_0795 2Fe-2S ferredoxin; SPTR: Possible 2Fe-2S ferredoxin
YP_003998812.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dfe:Dfer_4578 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003998813.1	KEGG: dfe:Dfer_4647 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998814.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4648 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003998815.1	KEGG: dfe:Dfer_3247 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998816.1	KEGG: dfe:Dfer_3246 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998817.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_5071 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_003998818.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4175 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain
YP_003998819.1	KEGG: sli:Slin_3039 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998820.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_3041 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family
YP_003998821.1	COGs: COG3538 conserved hypothetical protein; InterPro IPR008313; KEGG: sli:Slin_4029 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1237)
YP_003998822.1	SPTR: Putative FAD-dependent oxidoreductase; manually curated; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003998823.1	manually curated; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase)
YP_003998824.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: cpi:Cpin_1725 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; PFAM: Integral membrane protein TerC family
YP_003998825.1	COGs: COG0204 1-acyl-sN-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_5448 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sN-glycerol-3-phosphate acyltransferases
YP_003998826.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: sli:Slin_5449 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: Glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_003998827.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: fba:FIC_00169 hydrogen peroxide-inducible genes activator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: LysR family transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turN-helix protein, lysR family
YP_003998828.1	COGs: COG0376 Catalase (peroxidase I); InterPro IPR019793:IPR019794:IPR000763:IPR002016; KEGG: bbt:BBta_6389 catalase; PFAM: Haem peroxidase; SPTR: Catalase-peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI
YP_003998829.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: sli:Slin_5169 proteiN-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: ProteiN-export membrane protein SecD; TIGRFAM: proteiN-export membrane protein SecD; proteiN-export membrane protein, SecD/SecF family; proteiN-export membrane protein SecF; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: proteiN-export membrane protein SecD; proteiN-export membrane protein, SecD/SecF family; proteiN-export membrane protein SecF
YP_003998830.1	KEGG: coc:Coch_0090 tRNA delta(2)-isopentenylpyrophosphate transferase; SPTR: tRNA dimethylallyltransferase
YP_003998831.1	KEGG: zpr:ZPR_1875 membrane or secreted protein; SPTR: Putative uncharacterized protein
YP_003998832.1	COGs: COG1739 conserved hypothetical protein; InterPro IPR020569:IPR001498:IPR015796; KEGG: dfe:Dfer_3285 protein of unknown function UPF0029; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family
YP_003998833.1	COGs: COG1077 ActiN-like ATPase involved in cell morphogenesis; InterPro IPR004000:IPR004753; KEGG: sli:Slin_5925 cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003998834.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: sli:Slin_5926 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_003998835.1	KEGG: sli:Slin_5927 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: rod shape-determining protein MreD
YP_003998836.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_4919 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003998837.1	COGs: COG0204 1-acyl-sN-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dfe:Dfer_3642 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase
YP_003998838.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: sli:Slin_5855 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell divisionFtsK/SpoIIIE; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_003998839.1	COGs: COG2834 Outer membrane lipoproteiN-sorting protein; InterPro IPR004564; KEGG: sli:Slin_5854 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_003998840.1	KEGG: sli:Slin_2589 protein of unknown function DUF303 acetylesterase putative; SPTR: Putative uncharacterized protein
YP_003998841.1	KEGG: phe:Phep_4116 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998842.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: sli:Slin_4424 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domaiN-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003998843.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterProIPR020615:IPR020610:IPR002155:IPR020616:IPR 020617; KEGG: dfe:Dfer_3553 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003998844.1	KEGG: dfe:Dfer_4871 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998845.1	COGs: COG1171 Threonine dehydratase; InterPro IPR000634:IPR001926:IPR001721:IPR011820; KEGG: sli:Slin_5911 threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domaiN-containing protein; SPTR: Threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase
YP_003998846.1	KEGG: sli:Slin_1136 TonB-dependent receptor; SPTR: TonB-dependent receptor
YP_003998847.1	InterPro IPR019115; KEGG: sli:Slin_3442 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging)
YP_003998848.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR004358:IPR005467; KEGG: cpi:Cpin_0694 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998849.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_2742 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003998850.1	KEGG: dfe:Dfer_3665 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998851.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003998852.1	COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794:IPR016192; KEGG: sli:Slin_2937 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflaviN-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_003998853.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607:IPR013982:IPR002695; KEGG: dfe:Dfer_3074 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_003998854.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: dfe:Dfer_4823 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3
YP_003998855.1	KEGG: dfe:Dfer_3304 mannose-6-phosphate isomerase type II; SPTR: Mannose-6-phosphate isomerase type II; PFAM: Mannose-6-phosphate isomerase
YP_003998856.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: fjo:Fjoh_2355 GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family protein
YP_003998857.1	COGs: COG1159 GTPase; InterProIPR002917:IPR004044:IPR006073:IPR005225:IPR 005662; KEGG: sli:Slin_5225 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_003998858.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917:IPR012160; KEGG: dfe:Dfer_3855 sulfatase; PFAM: sulfatase; SPTR: Sulfatase; PFAM: Sulfatase
YP_003998859.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR014021:IPR014014:IPR 000629:IPR014001; KEGG: dfe:Dfer_0542 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003998860.1	InterPro IPR000504; KEGG: dfe:Dfer_2980 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_003998861.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4207 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003998862.1	InterPro IPR008160; KEGG: gau:GAU_2021 hypothetical protein; PFAM: Collagen triple helix repeat-containing protein; SPTR: Gp4; PFAM: Collagen triple helix repeat (20 copies)
YP_003998863.1	KEGG: dfe:Dfer_5116 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase
YP_003998864.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608:IPR011078; KEGG: zpr:ZPR_3232 alanine racemase; PFAM: alanine racemase domain protein; SPTR: Putative uncharacterized protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003998865.1	COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: sli:Slin_1117 protein of unknown function DUF423; PFAM: protein of unknown function DUF423; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF423)
YP_003998866.1	COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR001753:IPR010198; KEGG: coc:Coch_0505 naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase)
YP_003998867.1	COGs: COG0102 Ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: dfe:Dfer_3497 ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; manually curated; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_003998868.1	COGs: COG0103 Ribosomal protein S9; InterPro IPR000754:IPR020574; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_003998869.1	COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR005706:IPR018130; KEGG: sli:Slin_4743 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_003998870.1	COGs: COG0264 Translation elongation factor Ts; InterPro IPR000449:IPR014039:IPR001816:IPR018101; KEGG: sli:Slin_4744 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitiN-associated- domaiN-containing protein; SPTR: Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_003998871.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: rbi:RB2501_10872 hypothetical protein; PFAM: cyclic nucleotide-binding; SPTR: Putative uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_003998872.1	KEGG: cpi:Cpin_2508 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998873.1	InterPro IPR011637; KEGG: bav:BAV1817 membrane protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX
YP_003998874.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR008824:IPR003959:IPR008823:IPR004605:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_003998875.1	KEGG: dfe:Dfer_3880 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998876.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: sli:Slin_5344 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_003998877.1	KEGG: dfe:Dfer_4062 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998878.1	InterPro IPR002711; KEGG: cla:Cla_0876 hypothetical protein; PFAM: HNH endonuclease; SPTR: Putative uncharacterized protein
YP_003998879.1	KEGG: lpp:lpp1079 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998880.1	InterPro IPR008631:IPR022272; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase; PFAM: Glycogen synthase
YP_003998881.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192:IPR020578:IPR016454; KEGG: dfe:Dfer_4416 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_003998882.1	COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: sli:Slin_3251 peptidase S10 serine carboxypeptidase; PFAM: peptidase S10 serine carboxypeptidase; SPTR: Peptidase S10 serine carboxypeptidase; PFAM: Serine carboxypeptidase
YP_003998883.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492:IPR000215; KEGG: cpi:Cpin_5598 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003998884.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_003998885.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5196 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003998886.1	COGs: COG3384 conserved hypothetical protein; InterPro IPR004183:IPR014436; KEGG: phe:Phep_4269 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase
YP_003998887.1	COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086:IPR011876; KEGG: cpi:Cpin_4731 isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: Isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1
YP_003998888.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR001093:IPR000644:IPR005990:IPR015875:IPR 018529; KEGG: dfe:Dfer_4441 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_003998889.1	COGs: COG1972 Nucleoside permease; InterPro IPR002668:IPR011642:IPR011657; KEGG: dfe:Dfer_2802 Na+ dependent nucleoside transporter domain protein; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; SPTR: Na+ dependent nucleoside transporter domain protein; PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter
YP_003998890.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: sli:Slin_5552 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_003998891.1	KEGG: sli:Slin_0027 esterase/lipase-like protein; SPTR: Putative uncharacterized protein
YP_003998892.1	COGs: COG2706 3-carboxymuconate cyclase; KEGG: cpi:Cpin_0750 6-phosphogluconolactonase; SPTR: 6-phosphogluconolactonase; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme
YP_003998893.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: dfe:Dfer_1067 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003998894.1	COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; InterPro IPR004433; KEGG: dfe:Dfer_1055 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase
YP_003998895.1	KEGG: dfe:Dfer_3194 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998896.1	COGs: COG1956 GAF domaiN-containing protein; InterPro IPR003018; KEGG: sli:Slin_5928 GAF domaiN-containing protein; PFAM: GAF domain protein; SPTR: GAF domaiN-containing protein; PFAM: GAF domain
YP_003998897.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: fps:FP1755 nucleoside triphosphate pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: Putative uncharacterized protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_003998898.1	COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR016286; KEGG: cpi:Cpin_6806 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Alpha-L-fucosidase; PFAM: Alpha-L-fucosidase
YP_003998899.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6519 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_003998900.1	KEGG: fjo:Fjoh_3270 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003998901.1	COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: dfe:Dfer_4076 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase; manually curated; PFAM: CalcineuriN-like phosphoesterase
YP_003998902.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866:IPR017936; KEGG: sli:Slin_1584 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin; PFAM: AhpC/TSA family
YP_003998903.1	COGs: COG2220 ZN-dependent hydrolase of the beta-lactamase fold; KEGG: fjo:Fjoh_2786 beta-lactamase domaiN-containing protein; SPTR: Conserved protein YtkL; PFAM: Metallo-beta-lactamase superfamily
YP_003998904.1	COGs: COG3511 Phospholipase C; InterPro IPR007312:IPR017909:IPR006311:IPR017767; KEGG: dfe:Dfer_1225 phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase family; TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; Tat (twiN-arginine translocation) pathway signal sequence
YP_003998905.1	KEGG: pfa:PF11_0207 conserved Plasmodium protein; SPTR: Uncharacterized protein PF11_0207
YP_003998906.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016160:IPR012394; KEGG: lic:LIC12761 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Putative uncharacterized protein; PFAM: Aldehyde dehydrogenase family
YP_003998907.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003998908.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_4080 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003998910.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: sli:Slin_4079 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_003998911.1	COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: sli:Slin_6029 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: Nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_003998912.1	InterPro IPR013740:IPR017936; KEGG: dfe:Dfer_3524 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Redoxin
YP_003998913.1	KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998914.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3785 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003998915.1	InterPro IPR015414; KEGG: dfe:Dfer_3984 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein
YP_003998916.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: chu:CHU_2101 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PRIAM: dGTPase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative
YP_003998917.1	COGs: COG1983 Putative stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_4257 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain; Protein of unknown function (DUF2807)
YP_003998918.1	COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sli:Slin_2744 transcriptional regulator, PadR-like family; PFAM: transcriptional regulator PadR family protein; SPTR: Transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like family
YP_003998919.1	KEGG: sli:Slin_5175 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998920.1	InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3882 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_003998921.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cli:Clim_0505 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_003998922.1	KEGG: sli:Slin_5353 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998923.1	InterPro IPR001705; KEGG: phe:Phep_3522 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_003998924.1	KEGG: cpc:Cpar_1143 secreted protein; SPTR: Secreted protein
YP_003998925.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR006089; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003998926.1	COGs: COG3325 Chitinase; InterPro IPR001223:IPR001579:IPR011583; KEGG: cpi:Cpin_2186 glycoside hydrolase family 18; PFAM: glycoside hydrolase family 18; SMART: chitinase II; SPTR: Glycoside hydrolase family 18; PFAM: Glycosyl hydrolases family 18
YP_003998927.1	KEGG: chu:CHU_0691 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998928.1	COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR001984:IPR011761:IPR 004815:IPR008268:IPR003593; KEGG: sli:Slin_5918 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_003998929.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062:IPR004651; KEGG: sli:Slin_5537 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_003998930.1	COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062:IPR006063; KEGG: dfe:Dfer_4238 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_003998931.1	COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR017926:IPR010139:IPR016226; KEGG: sli:Slin_5533 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_003998932.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dfe:Dfer_5075 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_003998933.1	COGs: COG0165 Argininosuccinate lyase; InterPro IPR000362:IPR003031:IPR009049:IPR020557; KEGG: sli:Slin_0375 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_003998934.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterProIPR011659:IPR006665:IPR006664:IPR013026:IPR 019734; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SMART: Tetratricopeptide repeat; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_003998935.1	COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR003651:IPR005760; KEGG: sli:Slin_5983 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iroN-sulfur cluster loop; SMART: HhH-GPD family protein; SPTR: Putative A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpiN-helix motif; TIGRFAM: A/G-specific adenine glycosylase
YP_003998936.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: chu:CHU_3687 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein
YP_003998937.1	InterPro IPR019734:IPR013026; KEGG: dfe:Dfer_4434 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein
YP_003998938.1	COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; PRIAM: Ribonuclease E; SPTR: Ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_003998939.1	KEGG: coc:Coch_0676 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998940.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: chu:CHU_0695 amidase-type enzyme; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Amidase-type enzyme; manually curated; PFAM: CarboN-nitrogen hydrolase
YP_003998941.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: sli:Slin_5431 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003998942.1	COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR001509:IPR006368:IPR020904; KEGG: fjo:Fjoh_0330 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: GDP-D-mannose dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase
YP_003998943.1	InterPro IPR007730; KEGG: dfe:Dfer_3955 sporulation domain protein; PFAM: Sporulation domaiN-containing protein; SPTR: Sporulation domain protein; PFAM: Sporulation related domain
YP_003998944.1	KEGG: sli:Slin_1607 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998945.1	COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114:IPR018220; KEGG: dfe:Dfer_4579 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_003998946.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_1610 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003998947.1	KEGG: cpr:CPR_0049 branched-chain amino acid transport system II carrier protein; SPTR: Branched-chain amino acid transport system II carrier protein
YP_003998948.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 004811:IPR003607; KEGG: sli:Slin_1611 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domaiN-containing protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_003998949.1	KEGG: sli:Slin_5539 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998950.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017940:IPR017871:IPR 003593; KEGG: sli:Slin_5540 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003998951.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_5541 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003998952.1	COGs: COG0218 GTPase; InterPro IPR002917:IPR019987; KEGG: coc:Coch_0414 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_003998953.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: dfe:Dfer_3960 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family
YP_003998954.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125:IPR016192; KEGG: dfe:Dfer_4204 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003998955.1	COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832:IPR001189:IPR019833; KEGG: dfe:Dfer_4203 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_003998956.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: cpi:Cpin_1464 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: LacI family transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003998957.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: phe:Phep_1605 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003998958.1	COGs: COG2115 Xylose isomerase; InterPro IPR012307:IPR001998:IPR013452; KEGG: phe:Phep_1604 xylose isomerase; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase
YP_003998959.1	COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: phe:Phep_1152 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_003998960.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR011110:IPR011123:IPR003661:IPR003594:IPR 001789:IPR000005:IPR004358:IPR018060:IPR005467:IPR018062:I PR005829; KEGG: cpi:Cpin_5544 histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domaiN-containing protein; Two component regulator propeller; helix-turN-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turN-helix, AraC domain; SPTR: Histidine kinase; PFAM: Y_Y_Y domain; Two component regulator propeller; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003998961.1	COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322:IPR011658; KEGG: cpi:Cpin_5548 alpha-glucosidase; PFAM: glycoside hydrolase family 31; SMART: PA14 domain protein; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 31; PA14 domain
YP_003998962.1	InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_0782 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003998963.1	InterPro IPR012944; KEGG: fjo:Fjoh_0781 RagB/SusD domaiN-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family
YP_003998964.1	KEGG: zpr:ZPR_2490 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998965.1	COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: fjo:Fjoh_0774 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; SPTR: Putative glycosyl hydrolase family5; PFAM: Cellulase (glycosyl hydrolase family 5)
YP_003998966.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR010164; KEGG: cpi:Cpin_4031 ornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: Ornithine aminotransferase; TIGRFAM: ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase
YP_003998967.1	COGs: COG3118 Thioredoxin domaiN-containing protein; InterPro IPR013766:IPR006662:IPR017936:IPR017937; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domaiN-containing protein; SPTR: Thioredoxin C-2; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003998968.1	COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR013740:IPR017936; KEGG: cpi:Cpin_5421 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Thioredoxin; PFAM: Redoxin
YP_003998969.1	KEGG: dfe:Dfer_3689 PKD domain containing protein; SPTR: PKD domain containing protein
YP_003998970.1	InterPro IPR019861; KEGG: sli:Slin_5231 hypothetical protein; SPTR: Putative membrane protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_003998971.1	COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR017936; KEGG: dfe:Dfer_4173 cytochrome c biogenesis protein transmembrane region; PRIAM: ProteiN-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255
YP_003998972.1	COGs: COG1289 membrane protein; KEGG: gfo:GFO_1528 hypothetical protein; SPTR: Membrane protein containing DUF893; PFAM: Fusaric acid resistance protein family
YP_003998973.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_6586 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003998974.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_1541 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Signal transduction ATPase, FimS family protein; PFAM: Histidine kinase
YP_003998975.1	KEGG: bfs:BF0901 transmembrane protein; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2154)
YP_003998976.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362:IPR013539:IPR004769:IPR020557; KEGG: dfe:Dfer_3540 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domaiN-containing protein; fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase
YP_003998977.1	COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: lbl:LBL_2439 glycerol uptake facilitator protein; PFAM: major intrinsic protein; SPTR: Glycerol uptake facilitator protein; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins
YP_003998978.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR005914:IPR020845; KEGG: dfe:Dfer_3920 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acetoacetate--CoA ligase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase
YP_003998979.1	KEGG: fjo:Fjoh_1339 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_003998980.1	COGs: COG3176 Putative hemolysin; InterPro IPR002123; KEGG: bth:BT_3458 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Acyltransferase protein; PFAM: Acyltransferase
YP_003998981.1	KEGG: bvu:BVU_1407 hemolysin A; SPTR: Hemolysin A
YP_003998982.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: fjo:Fjoh_0578 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family
YP_003998983.1	KEGG: brm:Bmur_1148 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998984.1	InterPro IPR008565; KEGG: xal:XALc_1750 hypothetical protein of unknown function duf847; PFAM: protein of unknown function DUF847; SPTR: Putative uncharacterized protein; PFAM: Predicted lysozyme (DUF847)
YP_003998985.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: sli:Slin_4899 methylcrotonoyl-CoA carboxylase; PFAM: carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Methylcrotonoyl-CoA carboxylase; PFAM: Carboxyl transferase domain
YP_003998986.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR006089; KEGG: fjo:Fjoh_1932 acyl-CoA dehydrogenase domaiN-containing protein; PFAM: acyl-CoA dehydrogenase domaiN-containing protein; SPTR: Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003998987.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR006162; KEGG: gfo:GFO_2517 hydroxymethylglutaryl-CoA lyase-like protein; PFAM: pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase like protein; PFAM: HMGL-like
YP_003998988.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_4387 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003998989.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750:IPR003916; KEGG: zpr:ZPR_4510 monovalent cation/H+ antiporter subunit A; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: Monovalent cation/H+ antiporter subunit A; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TC 2.A.63.1
YP_003998990.1	InterPro IPR007182; KEGG: zpr:ZPR_4509 Na(+)/H(+) antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: CPA3 family monovalent cation:proton (H+) antiporter-3; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter; TC 2.A.63.1
YP_003998991.1	COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; InterPro IPR001133; KEGG: gfo:GFO_3555 monovalent cation/H+ antiporter subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: CPA3 family monovalent cation:proton (H+) antiporter-3 subunit C; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; TC 2.A.63.1
YP_003998992.1	COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750:IPR003918; KEGG: gfo:GFO_3556 Na(+)/H(+) antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: Na(+)/H(+) antiporter subunit D; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TC 2.A.63.1
YP_003998993.1	COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: gfo:GFO_3557 monovalent cation/H+ antiporter subunit E; PFAM: cation antiporter; SPTR: CPA3 family monovalent cation:proton (H+) antiporter-3 subunit E; PFAM: Na+/H+ ion antiporter subunit; TC 2.A.63.1
YP_003998994.1	InterPro IPR007208; KEGG: gfo:GFO_3558 monovalent cation/H+ antiporter subunit F; PFAM: multiple resistance and pH regulation protein F; SPTR: CPA3 family monovalent cation:proton (H+) antiporter-3 subunit G; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF); Membrane transport protein MerF; TC 2.A.63.1
YP_003998995.1	COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: gfo:GFO_3559 Na(+)/H(+) antiporter subunit G; PFAM: Na+/H+ antiporter subunit; SPTR: CPA3 family monovalent cation:proton (H+) antiporter-3 subunit G; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; TC 2.A.63.1
YP_003998996.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665:IPR006664:IPR006690; KEGG: gme:Gmet_2727 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB; PFAM: Bacterial protein of unknown function (DUF937); OmpA family
YP_003998997.1	InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_4396 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_003998998.1	KEGG: dfe:Dfer_3773 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003998999.1	COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: sli:Slin_4398 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23
YP_003999000.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700:IPR006162; KEGG: dfe:Dfer_3775 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_003999001.1	COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: aas:Aasi_0450 hypothetical protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein, putative; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein
YP_003999002.1	KEGG: sli:Slin_3613 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_003999003.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cts:Ctha_0890 integrase family protein; PFAM: integrase family protein; SPTR: Putative transposase; PFAM: Phage integrase family
YP_003999004.1	InterPro IPR003961; KEGG: bfs:BF4095 hypothetical protein; PFAM: Fibronectin type III domain protein; SPTR: Putative uncharacterized protein
YP_003999005.1	InterPro IPR003961:IPR018506; KEGG: cth:Cthe_1235 cellulose 1,4-beta-cellobiosidase; PFAM: Fibronectin type III domain protein; SPTR: Cellulose 1,4-beta-cellobiosidase
YP_003999006.1	KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; TIGRFAM: Bacteroides forsythus 147-residue repeat
YP_003999007.1	KEGG: cpi:Cpin_2775 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999008.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_4160 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003999009.1	COGs: COG4585 Signal transduction histidine kinase; InterProIPR001440:IPR003594:IPR019734:IPR005467:IPR 013026; KEGG: dfe:Dfer_4503 histidine kinase; PFAM: ATP-binding region ATPase domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide repeat; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Tetratricopeptide repeat
YP_003999010.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: rbi:RB2501_09095 dehydrogenase-like protein; PFAM: oxidoreductase domain protein; SPTR: Putative dehydrogenase-like protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain
YP_003999011.1	COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: sli:Slin_2401 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Metallophosphoesterase
YP_003999012.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_3276 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003999013.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: sli:Slin_3277 beta-lactamase domain protein; SPTR: Putative hydrolase; PFAM: Metallo-beta-lactamase superfamily
YP_003999014.1	KEGG: phe:Phep_1451 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Transcription elongation factor, GreA/GreB, C-term
YP_003999015.1	COGs: COG0439 Biotin carboxylase; InterPro IPR003135:IPR011761; KEGG: dfe:Dfer_2846 ATP-dependent carboxylate-amine ligase domaiN-containing protein; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; SPTR: ATP-dependent carboxylate-amine ligase domaiN-containing protein; PFAM: ATP-grasp domain
YP_003999016.1	InterPro IPR011467; KEGG: sli:Slin_4915 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_003999017.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: dfe:Dfer_3632 transketolase domain protein; PFAM: Transketolase domaiN-containing protein; Transketolase central region; dehydrogenase E1 component; SPTR: Transketolase domain protein; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_003999018.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: coc:Coch_1195 peptidase dimerisation domain protein; PFAM: peptidase dimerisation domain protein; peptidase M20; SPTR: Peptidase dimerisation domain protein; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_003999019.1	COGs: COG2103 sugar phosphate isomerase; InterPro IPR005488:IPR005486; KEGG: dfe:Dfer_3685 N-acetylmuramic acid-6-phosphate etherase; SPTR: Glucokinase regulatory-like protein; TIGRFAM: glucokinase regulatory-like protein; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase
YP_003999020.1	InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: von Willebrand factor type A domain
YP_003999021.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703:IPR000215:IPR016366; KEGG: sli:Slin_2939 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: ATPase associated with various cellular activities AAA_3; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003999022.1	COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848:IPR004556:IPR019874:IPR002052; KEGG: sli:Slin_2938 modification methylase, HemK family; PFAM: methyltransferase small; SPTR: Possible N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: proteiN-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; proteiN-(glutamine-N5) methyltransferase, release factor-specific
YP_003999023.1	InterPro IPR010496; KEGG: zpr:ZPR_1939 multi-domain protein; PFAM: protein of unknown function DUF1080; SPTR: Putative multi-domain protein; PFAM: Domain of Unknown Function (DUF1080)
YP_003999024.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: phe:Phep_3533 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: Putative flavoprotein; PFAM: NADPH-dependent FMN reductase
YP_003999025.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR006411; KEGG: sli:Slin_0254 fructose-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype
YP_003999026.1	InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1460 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003999027.1	InterPro IPR012944:IPR002173; KEGG: dfe:Dfer_1459 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003999028.1	InterPro IPR009056; KEGG: sli:Slin_3038 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999029.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR006162:IPR002293; KEGG: fps:FP2126 amino acid-transporting permease; PFAM: amino acid permease-associated region; SPTR: Probable amino acid-transporting permease; PFAM: Amino acid permease; TC 2.A.3
YP_003999030.1	InterPro IPR003675; KEGG: sli:Slin_2393 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family
YP_003999031.1	InterPro IPR014883; KEGG: sli:Slin_3132 VRR-NUC domain protein; PFAM: VRR-NUC domaiN-containing protein; SPTR: VRR-NUC domain protein; PFAM: VRR-NUC domain
YP_003999032.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003999033.1	COGs: COG0359 Ribosomal protein L9; InterPro IPR020070:IPR020069:IPR020594; KEGG: dfe:Dfer_2007 ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_003999034.1	COGs: COG0238 Ribosomal protein S18; InterPro IPR001648:IPR018275:IPR008271; KEGG: dfe:Dfer_2008 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: Putative 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_003999035.1	COGs: COG0360 Ribosomal protein S6; InterPro IPR020814:IPR000529; KEGG: chu:CHU_2591 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_003999036.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576; KEGG: dfe:Dfer_2700 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_003999037.1	COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: sli:Slin_6617 oxidoreductase, putative; SPTR: Oxidoreductase, putative; PFAM: BNR/Asp-box repeat
YP_003999038.1	KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999039.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453:IPR005829:IPR020541; KEGG: dfe:Dfer_4064 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_003999040.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: zpr:ZPR_0969 two-component system response regulator; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003999041.1	KEGG: gfo:GFO_1468 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF937)
YP_003999042.1	COGs: COG1404 SubtilisiN-like serine protease; InterPro IPR000209:IPR010916; KEGG: phe:Phep_3748 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Subtilisin Novo (E.C.); PFAM: Subtilase family
YP_003999043.1	InterPro IPR001451; KEGG: sli:Slin_6090 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999044.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: sli:Slin_6089 DNA polymerase III gamma/tau subunits-like protein; SPTR: DNA polymerase III gamma/tau subunits-like protein; TIGRFAM: DNA polymerase III, delta' subunit
YP_003999046.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR017871:IPR003593; KEGG: dfe:Dfer_4779 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003999047.1	KEGG: sli:Slin_4282 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999048.1	KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999049.1	KEGG: dfe:Dfer_0218 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999050.1	COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR002314:IPR004154:IPR016061:IPR006195:IPR 004499; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II-like; AnticodoN-binding domain protein; tRNA synthetase class II (G H P and S); PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I
YP_003999051.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: dfe:Dfer_0216 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003999052.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171:IPR004620; KEGG: sli:Slin_1800 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_003999053.1	KEGG: sli:Slin_1014 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999054.1	COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432:IPR002625:IPR005747:IPR007696; KEGG: sli:Slin_0268 Smr protein/MutS2; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: Smr protein/MutS2; TIGRFAM: MutS2 family protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_003999055.1	COGs: COG0393 conserved hypothetical protein; InterPro IPR002765; KEGG: pru:PRU_1099 hypothetical protein; PFAM: protein of unknown function DUF74; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF74)
YP_003999056.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881:IPR002035; KEGG: sli:Slin_4278 hypothetical protein; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_003999057.1	COGs: COG0797 Lipoprotein; InterPro IPR005132:IPR012997; KEGG: alv:Alvin_0274 rare lipoprotein A; PFAM: Rare lipoprotein A; SPTR: Rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A
YP_003999058.1	KEGG: sli:Slin_4280 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3276)
YP_003999059.1	InterPro IPR004993; KEGG: dfe:Dfer_3419 GH3 auxiN-responsive promoter; PFAM: GH3 auxiN-responsive promoter; SPTR: GH3 auxiN-responsive promoter; PFAM: GH3 auxiN-responsive promoter
YP_003999060.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_1468 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003999061.1	COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: transcription activator effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain
YP_003999062.1	InterPro IPR004360; KEGG: bcl:ABC3500 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003999063.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_0539 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_003999064.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: dfe:Dfer_4888 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase
YP_003999065.1	COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: dfe:Dfer_4180 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal domain
YP_003999066.1	InterPro IPR007341; KEGG: cya:CYA_0127 hypothetical protein; PFAM: Transglycosylase-associated protein; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase associated protein
YP_003999067.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: sli:Slin_3615 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domaiN-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; SPTR: Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003999068.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR013839:IPR004150:IPR004149:IPR000445:IPR 001357:IPR001679:IPR018239:IPR013840; KEGG: dfe:Dfer_5111 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpiN-helix motif; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase; BRCT domain protein; SPTR: DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; Helix-hairpiN-helix motif; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent
YP_003999069.1	COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: zpr:ZPR_0401 hemiN-binding periplasmic protein; PFAM: periplasmic binding protein; SPTR: Hemin ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Periplasmic binding protein
YP_003999070.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522:IPR002202; KEGG: zpr:ZPR_0400 permease protein of ABC transporter; PFAM: transport system permease protein; SPTR: Hemin ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: FecCD transport family
YP_003999071.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: zpr:ZPR_0399 hemin transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Possible Vitamin B12-transporting ATPase; PFAM: ABC transporter
YP_003999072.1	COGs: COG3720 Putative heme degradation protein; InterPro IPR007845; KEGG: zpr:ZPR_0398 hemin degrading factor; PFAM: HaemiN-degrading family protein; SPTR: Hemin degrading factor; PFAM: HaemiN-degrading HenS.ChuX domain
YP_003999073.1	COGs: COG3016 Uncharacterized iroN-regulated protein; InterPro IPR007314; KEGG: zpr:ZPR_0404 hypothetical protein; PFAM: protein of unknown function DUF399; SPTR: Protein of hypothetical function; PFAM: Protein of unknown function, DUF399
YP_003999074.1	KEGG: dfe:Dfer_0581 lipoprotein; SPTR: Putative lipoprotein
YP_003999075.1	COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_3938 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase
YP_003999076.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_4653 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003999077.1	KEGG: dfe:Dfer_3974 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999078.1	COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692:IPR014395; KEGG: sli:Slin_5658 peptidase S45 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: Peptidase S45 penicillin amidase; PFAM: Penicillin amidase
YP_003999079.1	KEGG: dfe:Dfer_3787 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999080.1	COGs: COG3797 conserved hypothetical protein; InterPro IPR012545; KEGG: lic:LIC10638 hypothetical protein; PFAM: protein of unknown function DUF1697; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1697)
YP_003999081.1	COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR011698:IPR017926:IPR010075; KEGG: sli:Slin_6348 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I
YP_003999082.1	COGs: COG0572 Uridine kinase; InterPro IPR000764; KEGG: dfe:Dfer_4546 phosphoribulokinase/uridine kinase; SPTR: Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase
YP_003999083.1	KEGG: dfe:Dfer_2695 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999084.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dfe:Dfer_1696 peptidase S41; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Peptidase S41; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF)
YP_003999085.1	KEGG: pgn:PGN_0794 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2891)
YP_003999086.1	InterPro IPR005632; KEGG: tet:TTHERM_00268040 Viral A-type inclusion protein repeat containing protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)
YP_003999087.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003999088.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: mca:MCA2182 decarboxylase family protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: Lysine decarboxylase; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_003999089.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347:IPR020904; KEGG: dfe:Dfer_3961 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative oxidoreductase; PFAM: short chain dehydrogenase
YP_003999090.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: dfe:Dfer_3962 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_003999091.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sli:Slin_5159 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_003999092.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR001078; KEGG: mxa:MXAN_3454 2-oxo acid dehydrogenase acyltransferase catalytic subunit; PFAM: catalytic domaiN-containing protein of components of various dehydrogenase complexes; SPTR: 2-oxo acid dehydrogenase acyltransferase catalytic domain protein; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YP_003999093.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: fps:FP0059 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein FP0059; PFAM: Uncharacterised protein family UPF0102
YP_003999094.1	COGs: COG0321 Lipoate-protein ligase B; InterPro IPR004143:IPR000544:IPR020605; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B
YP_003999095.1	COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: dfe:Dfer_3890 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Chloromuconate cycloisomerase YkfB1; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YP_003999096.1	InterPro IPR005184; KEGG: mla:Mlab_0424 hypothetical protein; PFAM: protein of unknown function DUF306 Meta and HslJ; SPTR: Predicted protein; PFAM: META domain
YP_003999097.1	InterPro IPR000297; KEGG: dfe:Dfer_4724 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_003999098.1	KEGG: fjo:Fjoh_1571 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF419)
YP_003999099.1	KEGG: sli:Slin_1509 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999100.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600:IPR005829; KEGG: sli:Slin_1583 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family
YP_003999101.1	COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: ccv:CCV52592_0612 glycerate kinase 1; PFAM: glycerate kinase; PRIAM: Glycerate kinase; SPTR: Glycerate kinase 1; TIGRFAM: glycerate kinase; PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase
YP_003999102.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: afu:AF1753 lysophospholipase; PFAM: alpha/beta hydrolase fold; SPTR: Lysophospholipase; PFAM: Putative lysophospholipase
YP_003999103.1	InterPro IPR000620; KEGG: gfo:GFO_3582 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Predicted permease; PFAM: EamA-like transporter family
YP_003999104.1	COGs: COG0528 Uridylate kinase; InterPro IPR001048:IPR015963:IPR011817; KEGG: dfe:Dfer_2998 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_003999105.1	COGs: COG0233 Ribosome recycling factor; InterPro IPR002661:IPR015998; KEGG: sli:Slin_2387 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_003999106.1	KEGG: gur:Gura_3881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999107.1	KEGG: brm:Bmur_0975 response regulator receiver protein; SPTR: Putative uncharacterized protein
YP_003999108.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0332 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003999109.1	KEGG: sli:Slin_1872 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3570)
YP_003999110.1	KEGG: sli:Slin_1873 lipoprotein; SPTR: Putative uncharacterized protein
YP_003999111.1	COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: sli:Slin_1874 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; SPTR: Thiamine biosynthesis lipoprotein; PFAM: ApbE family
YP_003999112.1	InterPro IPR017936; KEGG: sli:Slin_1875 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003999113.1	InterPro IPR017941; KEGG: sli:Slin_1876 Rieske (2Fe-2S) iroN-sulphur domain protein; PFAM: Rieske [2Fe-2S] iroN-sulphur domain; SPTR: Rieske (2Fe-2S) iroN-sulphur domain protein; PFAM: Rieske [2Fe-2S] domain
YP_003999114.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0250 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003999115.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: fjo:Fjoh_3989 HxlR family transcriptional regulator; PFAM: helix-turN-helix HxlR type; SPTR: HxlR family transcriptional regulator; PFAM: HxlR-like helix-turN-helix
YP_003999116.1	InterPro IPR002591; KEGG: sli:Slin_3004 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003999117.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_3007 patatin; PFAM: Patatin; SPTR: Patatin; PFAM: PatatiN-like phospholipase
YP_003999118.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: sli:Slin_2909 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003999119.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078:IPR001345; KEGG: sli:Slin_2908 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family
YP_003999120.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_003999121.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5142 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003999122.1	COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR011659:IPR005151:IPR012393; KEGG: zpr:ZPR_3734 tricorn protease; PFAM: peptidase S41; WD40-like beta Propeller containing protein; SPTR: Putative peptidase/protease family protein; PFAM: WD40-like Beta Propeller Repeat; Peptidase family S41
YP_003999123.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3424 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003999124.1	KEGG: dfe:Dfer_2910 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999125.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR006094:IPR011601:IPR016166:IPR003170; KEGG: dfe:Dfer_3956 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domaiN-containing protein; FAD linked oxidase domain protein; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_003999126.1	COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_6369 protein of unknown function DUF1684; PFAM: protein of unknown function DUF1684; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1684)
YP_003999127.1	COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: vcj:VCD_003201 isocitrate dehydrogenase (NADP); PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type
YP_003999128.1	COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: tpd:Teth39_1868 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain
YP_003999129.1	KEGG: dfe:Dfer_3355 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999130.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: fba:FIC_01274 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: Transmembrane protein; PFAM: Domain of unknown function DUF20
YP_003999131.1	COGs: COG4299 conserved hypothetical protein; KEGG: dfe:Dfer_1233 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1624)
YP_003999132.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_0469 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Putative uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_003999133.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: fjo:Fjoh_2709 DNA mismatch repair protein MutS domaiN-containing protein; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; SPTR: DNA mismatch repair protein MutS domain protein; manually curated; PFAM: MutS domain V
YP_003999134.1	KEGG: gau:GAU_3482 hypothetical membrane protein; SPTR: Hypothetical membrane protein
YP_003999135.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR000731; KEGG: phe:Phep_3708 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Cation efflux protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003999136.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_3707 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003999137.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: phe:Phep_3706 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_003999138.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_6406 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003999139.1	COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_6407 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_003999140.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863:IPR001431; KEGG: sli:Slin_5397 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003999141.1	InterPro IPR000866:IPR017936; KEGG: cts:Ctha_1949 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Putative uncharacterized protein; PFAM: AhpC/TSA family
YP_003999142.1	COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: cyp:PCC8801_0042 polysaccharide biosynthesis protein; SPTR: Glycosyl transferase group 1
YP_003999143.1	InterPro IPR006620; KEGG: bxe:Bxe_B1651 hypothetical protein; SMART: Prolyl 4-hydroxylase alpha subunit; SPTR: Putative uncharacterized protein
YP_003999144.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017940:IPR017871:IPR 003593; KEGG: fjo:Fjoh_2404 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003999145.1	COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: cph:Cpha266_1928 protein of unknown function DUF306, MetA and HslJ; PFAM: protein of unknown function DUF306 Meta and HslJ; SPTR: Putative uncharacterized protein; PFAM: META domain
YP_003999146.1	InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase
YP_003999147.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bcb:BCB4264_A4383 integrase core domain protein; PFAM: Integrase catalytic region; SPTR: Transposase; PFAM: Integrase core domain
YP_003999148.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR011904:IPR018039:IPR020845; KEGG: sli:Slin_2894 acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acetate/CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_003999149.1	COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307:IPR017909:IPR006311; KEGG: dfe:Dfer_3054 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domaiN-containing protein TIM barrel; SPTR: Hydroxypyruvate isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twiN-arginine translocation) pathway signal sequence
YP_003999150.1	COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175:IPR006056; KEGG: dfe:Dfer_4261 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_003999151.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR015590:IPR005931; KEGG: sli:Slin_5523 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1
YP_003999152.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: phe:Phep_3389 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003999153.1	KEGG: dfe:Dfer_3514 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999154.1	COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_5033 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; manually curated; PFAM: Saccharopine dehydrogenase
YP_003999155.1	COGs: COG0438 Glycosyltransferase; KEGG: bth:BT_0471 glycosyltransferase; SPTR: Glycoside transferase family 4; PFAM: Glycosyl transferases group 1
YP_003999156.1	KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1
YP_003999157.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: sli:Slin_5890 Fmu (Sun) domain protein; PFAM: Fmu (Sun) domain protein; SPTR: Fmu (Sun) domain protein; PFAM: NOL1/NOP2/sun family
YP_003999158.1	InterPro IPR006685; KEGG: zpr:ZPR_2321 small-conductance mechanosensitive ion channel protein; PFAM: MscS Mechanosensitive ion channel; SPTR: Small-conductance mechanosensitive ion channel protein; PFAM: Mechanosensitive ion channel
YP_003999159.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520; KEGG: bfs:BF1141 exonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; PFAM: Exonuclease
YP_003999160.1	KEGG: snc:HMPREF0837_11329 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999161.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: rfr:Rfer_3772 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003999162.1	KEGG: lif:LinJ30.3030 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999163.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR009056:IPR013428:IPR013427; KEGG: dfe:Dfer_3060 membrane-bound dehydrogenase domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type
YP_003999164.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR005834:IPR011951:IPR006439; KEGG: sli:Slin_3999 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254
YP_003999165.1	COGs: COG3411 Ferredoxin; InterPro IPR009737; KEGG: sli:Slin_4000 ferredoxiN-like protein; PFAM: Sucraseferredoxin family protein; SPTR: FerredoxiN-like protein; PFAM: Sucrase/ferredoxiN-like
YP_003999166.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: chu:CHU_0006 shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase
YP_003999167.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4444 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein
YP_003999168.1	COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: phe:Phep_4158 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase (ComA)
YP_003999169.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat protein; PFAM: Surface antigen variable number repeat
YP_003999170.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634:IPR002142:IPR004635; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type
YP_003999171.1	InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: Phage shock protein C, PspC; PFAM: PspC domain
YP_003999172.1	KEGG: xbo:XBJ1_3762 conserved hypothetical protein; exported protein; SPTR: Putative uncharacterized protein
YP_003999173.1	KEGG: dfe:Dfer_3623 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Trypsin
YP_003999174.1	InterPro IPR007168; KEGG: bth:BT_1609 hypothetical protein; PFAM: PspC domain protein; SPTR: Putative uncharacterized protein; PFAM: PspC domain
YP_003999175.1	KEGG: sli:Slin_0660 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999176.1	KEGG: sli:Slin_0659 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999177.1	COGs: COG0061 sugar kinase; InterPro IPR002504; KEGG: dfe:Dfer_3891 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: ATP-NAD/AcoX kinase; PFAM: ATP-NAD kinase
YP_003999178.1	InterPro IPR000644; KEGG: dfe:Dfer_3892 CBS domain containing protein; PFAM: CBS domain containing protein; SPTR: CBS domain containing protein; PFAM: CBS domain
YP_003999179.1	COGs: COG0204 1-acyl-sN-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_4584 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sN-glycerol-3-phosphate acyltransferases
YP_003999180.1	InterPro IPR005067; KEGG: dfe:Dfer_5690 acyl-(acyl-carrier-protein) desaturase; PFAM: fatty acid desaturase type 2; PRIAM: Acyl-[acyl-carrier-protein] desaturase; SPTR: Acyl-(Acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase
YP_003999181.1	InterPro IPR006976; KEGG: ami:Amir_5688 VanZ family protein; PFAM: VanZ family protein; SPTR: Putative uncharacterized protein; manually curated; PFAM: VanZ like family
YP_003999182.1	InterPro IPR019619; KEGG: sli:Slin_2451 protein of unknown function DUF2490; PFAM: Protein of unknown function DUF2490; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_003999183.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR006195:IPR002312:IPR004365:IPR004364:IPR 004115:IPR004524; KEGG: dfe:Dfer_4606 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_003999184.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: sli:Slin_4433 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Putative undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_003999185.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: sli:Slin_4434 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_003999186.1	InterPro IPR005632; KEGG: sli:Slin_4435 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like)
YP_003999187.1	COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: sli:Slin_4436 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)
YP_003999188.1	COGs: COG0263 Glutamate 5-kinase; InterProIPR002478:IPR001057:IPR011529:IPR001048:IPR 005715; KEGG: sli:Slin_0426 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; SPTR: Glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_003999189.1	KEGG: sli:Slin_6086 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999190.1	COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086:IPR001694; KEGG: sli:Slin_2443 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: NADH dehydrogenase (Quinone); PFAM: NADH dehydrogenase
YP_003999191.1	COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR006195:IPR010916:IPR002312:IPR004365:IPR 004364:IPR004522; KEGG: dfe:Dfer_4215 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_003999192.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR005467:IPR004358; KEGG: dfe:Dfer_3565 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Sensor protein RprX; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003999193.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR005829:IPR001867; KEGG: dfe:Dfer_3566 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domaiN-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003999194.1	COGs: COG0288 Carbonic anhydrase; InterPro IPR015892:IPR001765; KEGG: chu:CHU_0303 carbonate dehydratase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Sulfate Permease; PFAM: Carbonic anhydrase
YP_003999195.1	COGs: COG0326 Molecular chaperone HSP90 family; InterProIPR003594:IPR019805:IPR020575:IPR001404:IPR 020576; KEGG: dfe:Dfer_5199 heat shock protein 90; PFAM: ATP-binding region ATPase domain protein; Heat shock protein Hsp90-like; SMART: ATP-binding region ATPase domain protein; SPTR: ATP-binding region ATPase domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_003999196.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: fba:FIC_01188 cytosolic long-chain acyl-CoA thioester hydrolase family protein; PFAM: thioesterase superfamily protein; SPTR: 4-hydroxybenzoyl-CoA thioesterase domain protein; PFAM: Thioesterase superfamily
YP_003999197.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR000672:IPR020867:IPR020630:IPR020631; KEGG: dfe:Dfer_1212 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_003999198.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dfe:Dfer_3286 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated; PFAM: Sugar (and other) transporter; Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_003999199.1	COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: dfe:Dfer_2889 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain
YP_003999200.1	InterPro IPR007793:IPR019933; KEGG: sli:Slin_5835 DivIVA domain protein; PFAM: DivIVA family protein; SPTR: DivIVA domain protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain
YP_003999201.1	InterProIPR001680:IPR019782:IPR017986:IPR019775:IPR 020472:IPR019781; KEGG: chu:CHU_0759 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: WD domain, G-beta repeat
YP_003999202.1	COGs: COG2091 Phosphopantetheinyl transferase; InterPro IPR008278; KEGG: sli:Slin_5837 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily
YP_003999203.1	KEGG: sli:Slin_5833 hypothetical protein; SPTR: General stress protein; manually curated; PFAM: Protein of unknown function (DUF2847)
YP_003999204.1	COGs: COG0414 Panthothenate synthetase; InterPro IPR003721; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_003999205.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: cli:Clim_0472 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase, family M23; PFAM: Peptidase family M23
YP_003999206.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: hoh:Hoch_3036 NmrA family protein; SPTR: Putative uncharacterized protein; PFAM: NmrA-like family
YP_003999207.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dfe:Dfer_1079 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: YwnA; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_003999208.1	COGs: COG5368 conserved hypothetical protein; InterPro IPR016883; KEGG: dfe:Dfer_4452 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2329); Protein of unknown function (DUF3131)
YP_003999209.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR017932:IPR005855:IPR000583:IPR001347; KEGG: sli:Slin_4464 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_003999210.1	KEGG: bfs:BF3188 lipoprotein; SPTR: Putative uncharacterized protein
YP_003999211.1	COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: sli:Slin_4463 starch synthase; PFAM: Starch synthase catalytic domaiN-containing protein; SPTR: Starch synthase; PFAM: Starch synthase catalytic domain
YP_003999212.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: dfe:Dfer_4157 peptidase M61 domain protein; PFAM: peptidase M61 domain protein; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase
YP_003999213.1	InterPro IPR020939:IPR000271; KEGG: dfe:Dfer_3852 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_003999214.1	InterPro IPR000100; KEGG: dfe:Dfer_3851 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_003999215.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: dfe:Dfer_3850 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_003999216.1	COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: gfo:GFO_0202 M22 family peptidase; PFAM: peptidase M22 glycoprotease; SPTR: Peptidase, family M22; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ
YP_003999217.1	InterPro IPR003489; KEGG: dfe:Dfer_3255 sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Putative sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_003999218.1	KEGG: dfe:Dfer_4391 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999219.1	KEGG: sli:Slin_5879 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999220.1	InterPro IPR009959; KEGG: hch:HCH_05478 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase
YP_003999221.1	KEGG: bth:BT_0768 hypothetical protein; SPTR: Para-aminobenzoate synthase component I; PFAM: Aminotransferase class IV
YP_003999222.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: bth:BT_0767 para-aminobenzoate synthase component I; PFAM: Chorismate binding-like; SPTR: Putative para-aminobenzoate synthase component I; PFAM: chorismate binding enzyme
YP_003999223.1	COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437:IPR020580:IPR001597; KEGG: dfe:Dfer_4078 glycine dehydrogenase; PFAM: Glycine cleavage system P-proteiN-like; aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating)
YP_003999224.1	COGs: COG2234 aminopeptidase; InterPro IPR018247:IPR007484; KEGG: dfe:Dfer_3397 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28
YP_003999225.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5087 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1
YP_003999226.1	InterPro IPR003400; KEGG: fba:FIC_00415 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_003999227.1	InterPro IPR003400; KEGG: fba:FIC_00416 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1
YP_003999228.1	COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR003538:IPR006260; KEGG: dfe:Dfer_4058 TonB family protein; PFAM: TonB domain; SPTR: TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TC 2.C.1.1.1
YP_003999229.1	KEGG: sli:Slin_5091 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999230.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: dfe:Dfer_4060 phosphate ABC transporter, phosphate-binding component; SPTR: Putative phosphate ABC transporter, phosphate-binding component
YP_003999231.1	InterPro IPR019734:IPR013026; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_003999232.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850:IPR006259; KEGG: phe:Phep_3381 adenylate kinase; PFAM: adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_003999233.1	COGs: COG0536 GTPase; InterProIPR006074:IPR006073:IPR014100:IPR006169:IPR 002917:IPR005225; KEGG: dfe:Dfer_4091 GTPase ObgE; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_003999234.1	COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: dfe:Dfer_4088 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_003999235.1	COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006138:IPR006137; KEGG: dfe:Dfer_4087 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_003999236.1	COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR020396:IPR001268; KEGG: sli:Slin_5100 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH-quinone oxidoreductase; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_003999237.1	COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR014029:IPR001135; KEGG: sli:Slin_5101 NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YP_003999238.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: dfe:Dfer_4084 NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_003999239.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR001949:IPR011538:IPR019554:IPR019575:IPR 011537; KEGG: dfe:Dfer_4083 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iroN-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit
YP_003999240.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iroN-sulphur binding; ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iroN-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iroN-sulfur binding region
YP_003999241.1	COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086:IPR001694; KEGG: dfe:Dfer_4081 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: NADH dehydrogenase (Quinone); PFAM: NADH dehydrogenase
YP_003999242.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017896:IPR010226:IPR017900; KEGG: dfe:Dfer_4080 NADH-quinone oxidoreductase, chain I; SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_003999243.1	COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: sli:Slin_5107 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_003999244.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: sli:Slin_5080 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; SPTR: Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein
YP_003999245.1	KEGG: sli:Slin_2396 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999246.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dfe:Dfer_2993 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_003999247.1	KEGG: dfe:Dfer_2994 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999248.1	InterPro IPR019850; KEGG: chu:CHU_3683 gliding motility-related protein; SPTR: Possible gliding motility-related protein; TIGRFAM: gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD
YP_003999249.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439:IPR017871; KEGG: dfe:Dfer_4068 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003999250.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: phe:Phep_2461 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: MFS family major facilitator transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_003999251.1	KEGG: bpo:BP951000_2298 TPR domaiN-containing protein; SPTR: Putative uncharacterized protein
YP_003999252.1	COGs: COG2021 Homoserine acetyltransferase; InterPro IPR008220:IPR000073:IPR006296; KEGG: dfe:Dfer_2669 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_003999253.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR002818:IPR000005; KEGG: phe:Phep_1182 helix-turN-helix-domain containing protein AraC type; PFAM: helix-turN-helix- domain containing protein AraC type; ThiJ/PfpI domaiN-containing protein; SMART: Helix-turN-helix, AraC domain; SPTR: Helix-turN-helix-domain containing protein AraC type; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003999254.1	InterPro IPR019587; KEGG: phe:Phep_2101 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_003999255.1	InterPro IPR016518; KEGG: coc:Coch_0071 glycoside hydrolase family protein; PRIAM: Alpha-L-fucosidase; SPTR: Glycoside hydrolase family protein
YP_003999256.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_3406 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family
YP_003999257.1	InterPro IPR012910; KEGG: pru:PRU_2833 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor
YP_003999258.1	KEGG: pru:PRU_2832 lipoprotein; SPTR: Putative uncharacterized protein
YP_003999259.1	KEGG: phe:Phep_2499 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999260.1	InterPro IPR013538; KEGG: lbf:LBF_1056 hypothetical protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_003999261.1	KEGG: dfe:Dfer_2475 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999262.1	KEGG: sli:Slin_5161 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999263.1	COGs: COG1435 Thymidine kinase; InterPro IPR020633:IPR001267; KEGG: dfe:Dfer_4396 thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; PFAM: Thymidine kinase
YP_003999264.1	COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: cpi:Cpin_0262 protein of unknown function DUF606; PFAM: protein of unknown function DUF606; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF606
YP_003999265.1	KEGG: phe:Phep_1860 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999266.1	KEGG: dpo:Dpse_GA23842 GA23842 gene product from transcript GA23842-RA; SPTR: Putative uncharacterized protein
YP_003999267.1	InterPro IPR008462; KEGG: dfe:Dfer_5651 CsbD family protein; PFAM: CsbD family protein; SPTR: Putative uncharacterized protein; PFAM: CsbD-like
YP_003999268.1	KEGG: phe:Phep_2874 ABC transporter permease protein; SPTR: ABC transporter permease protein
YP_003999269.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: phe:Phep_2875 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003999270.1	COGs: COG1470 membrane protein; KEGG: cpi:Cpin_2550 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase
YP_003999271.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: kko:Kkor_2182 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_003999272.1	COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_2456 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/Acylhydrolase
YP_003999273.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5938 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family
YP_003999274.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: sli:Slin_5939 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_003999275.1	COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR001980:IPR004820:IPR004821; KEGG: sli:Slin_1465 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_003999276.1	KEGG: glo:Glov_1456 hypothetical protein; SPTR: CARDB domain protein
YP_003999277.1	COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: rbi:RB2501_03080 hypothetical protein; PFAM: protein of unknown function DUF159; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG2135
YP_003999278.1	COGs: COG3533 conserved hypothetical protein; InterPro IPR006558:IPR019775:IPR011081:IPR012878; KEGG: cpi:Cpin_4617 protein of unknown function DUF1680; PFAM: protein of unknown function DUF1680; Ig domain protein; SMART: LamG domain protein jellyroll fold domain protein; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); Bacterial Ig-like domain (group 4)
YP_003999279.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR005467; KEGG: rbi:RB2501_13794 two component system histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003999280.1	COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_3392 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003999281.1	KEGG: fra:Francci3_0264 alcohol dehydrogenase GroES-like protein; SPTR: Putative uncharacterized protein
YP_003999282.1	KEGG: cts:Ctha_1769 protein of unknown function DUF214; SPTR: Putative uncharacterized protein
YP_003999283.1	InterPro IPR018060; KEGG: hoh:Hoch_2463 transcriptional regulator, AraC family; SPTR: Putative uncharacterized protein
YP_003999284.1	KEGG: tbd:Tbd_1093 hypothetical protein; SPTR: Endopeptidase
YP_003999285.1	KEGG: phe:Phep_3410 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999286.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_1345 LytTR family two component transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003999287.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR019734:IPR003661:IPR003594:IPR005467:IPR 004358; KEGG: fjo:Fjoh_1344 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003999288.1	KEGG: vfm:VFMJ11_1247 tyrosine-specific transport protein; SPTR: Tyrosine-specific transport protein
YP_003999289.1	KEGG: vfm:VFMJ11_A0727 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999290.1	KEGG: sad:SAAV_0829 hypothetical protein; SPTR: Conserved proteiN-related protein
YP_003999292.1	KEGG: tet:TTHERM_00382170 cation channel family protein; SPTR: Cation channel family protein
YP_003999293.1	KEGG: bvu:BVU_0830 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999294.1	KEGG: cme:CMP358C similar to hedgehog protein; SPTR: Predicted protein
YP_003999295.1	KEGG: cme:CMD002C similar to trefoil factor; SPTR: Ig-like, group 2
YP_003999296.1	KEGG: pfd:PFDG_03228 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999297.1	InterPro IPR006530; KEGG: phe:Phep_1098 hypothetical protein; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; TIGRFAM: YD repeat (two copies)
YP_003999298.1	KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain
YP_003999299.1	KEGG: pyo:PY04558 hypothetical protein; SPTR: Outer capsid protein VP4
YP_003999300.1	KEGG: bth:BT_2927 cell wall-associated protein precursor; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies)
YP_003999301.1	KEGG: ptm:GSPATT00024180001 hypothetical protein; SPTR: Chromosome undetermined scaffold_82, whole genome shotgun sequence
YP_003999302.1	KEGG: bth:BT_2927 cell wall-associated protein precursor; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain
YP_003999303.1	KEGG: wol:WD1310 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999304.1	COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: cpi:Cpin_6345 transposase IS3/IS911 family protein; PFAM: Integrase catalytic region; SPTR: Putative uncharacterized protein; PFAM: Integrase core domain
YP_003999305.1	InterPro IPR002514; KEGG: cpi:Cpin_0036 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_003999306.1	KEGG: tme:Tmel_0894 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999307.1	KEGG: fjo:Fjoh_3613 hypothetical protein; SPTR: Cell well associated RhsD protein
YP_003999308.1	KEGG: cfa:607497 similar to Ig lambda chain V-III region LOI; SPTR: Transcriptional regulator
YP_003999309.1	InterPro IPR001387; KEGG: cpi:Cpin_4781 transcriptional regulator, XRE family; PFAM: helix-turN-helix domain protein; SMART: helix-turN-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turN-helix
YP_003999310.1	COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581; KEGG: dfe:Dfer_4563 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_003999311.1	COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: rbi:RB2501_08475 high-affinity transport of gluconate/gluconate permease; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: gluconate transporter; PFAM: GntP family permease; TIGRFAM: gluconate transporter
YP_003999312.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439:IPR017871; KEGG: chu:CHU_1763 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003999313.1	COGs: COG2346 Truncated hemoglobins; KEGG: cwo:Cwoe_3004 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial-like globin
YP_003999314.1	KEGG: sli:Slin_3137 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999315.1	COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: dfe:Dfer_2661 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3
YP_003999316.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: cpi:Cpin_1485 glutamate synthase (NADPH); PFAM: ferredoxiN-dependent glutamate synthase; SPTR: Glutamate synthase (NADPH); PFAM: Conserved region in glutamate synthase
YP_003999317.1	COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase
YP_003999318.1	KEGG: dfe:Dfer_2493 twiN-arginine translocation pathway signal; SPTR: TwiN-arginine translocation pathway signal
YP_003999319.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR006504; KEGG: dfe:Dfer_4992 arsenate reductase and related; PFAM: arsenate reductase and related; SPTR: Arsenate reductase and related; PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family
YP_003999320.1	InterPro IPR017936:IPR017937:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domaiN-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin; TIGRFAM: bacteriocin transport accessory protein, putative
YP_003999321.1	InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domaiN-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin
YP_003999322.1	InterPro IPR017936; KEGG: sli:Slin_1362 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003999323.1	COGs: COG2996 conserved hypothetical protein; InterPro IPR014464; KEGG: chu:CHU_1813 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999324.1	COGs: COG0450 Peroxiredoxin; InterPro IPR017936:IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PeroxiredoxiN-like; PRIAM: Peroxidase; SPTR: Peroxidase; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_003999325.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: sli:Slin_4817 sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Sigma 54 interacting domain protein; PFAM: ABC transporter
YP_003999326.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_3618 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease
YP_003999327.1	KEGG: dfe:Dfer_3617 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999328.1	KEGG: dfe:Dfer_1137 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999329.1	COGs: COG0372 Citrate synthase; InterPro IPR019810:IPR002020:IPR010953; KEGG: dfe:Dfer_0554 citrate synthase I; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate (Si)-synthase, eukaryotic; citrate synthase I (hexameric type)
YP_003999330.1	COGs: COG0433 ATPase; InterPro IPR008571; KEGG: cpi:Cpin_1273 protein of unknown function DUF853 NPT hydrolase putative; PFAM: protein of unknown function DUF853 NPT hydrolase; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF853)
YP_003999331.1	COGs: COG0572 Uridine kinase; KEGG: tgu:100226322 chromosome 9 open reading frame 95; SPTR: Uridine kinase
YP_003999332.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: sli:Slin_6044 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase family M1
YP_003999333.1	KEGG: abi:Aboo_0270 phage SPO1 DNA polymerase-related protein; SPTR: Uracil-DNA glycosylase, family 4, putative
YP_003999334.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: sli:Slin_0665 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: HD domain; Poly A polymerase head domain
YP_003999335.1	KEGG: sli:Slin_0436 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2851)
YP_003999336.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: dfe:Dfer_2966 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2
YP_003999337.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: sli:Slin_0434 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_003999338.1	KEGG: chu:CHU_2149 glycoside hydrolase family 5 protein; SPTR: CHU large protein; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein
YP_003999339.1	InterPro IPR003961; KEGG: dfe:Dfer_0264 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain
YP_003999340.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_3509 sterol desaturase-like protein; PFAM: fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; PFAM: Fatty acid hydroxylase superfamily
YP_003999341.1	InterPro IPR011701; KEGG: sli:Slin_3632 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003999342.1	COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: dfe:Dfer_3881 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; manually curated; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_003999343.1	COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: sli:Slin_0396 protein of unknown function DUF403; PFAM: protein of unknown function DUF403; SPTR: Putative uncharacterized protein; PFAM: Bacterial domain of unknown function (DUF403)
YP_003999344.1	COGs: COG3484 proteasome-type protease; InterPro IPR016545:IPR001353; KEGG: sli:Slin_2854 proteasome-type protease; PFAM: 20S proteasome A and B subunits; SPTR: Putative proteasome-type protease; PFAM: Proteasome subunit
YP_003999345.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: sli:Slin_2855 transglutaminase domain protein; PFAM: transglutaminase domaiN-containing protein; transglutaminase domain protein; SMART: transglutaminase domaiN-containing protein; SPTR: Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region
YP_003999346.1	COGs: COG1109 Phosphomannomutase; InterProIPR016066:IPR005841:IPR005844:IPR005845:IPR 005846:IPR005843; KEGG: sli:Slin_2856 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucomutase/phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_003999347.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5180 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003999348.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: gfo:GFO_2234 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: Peptidase family M16; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003999349.1	InterPro IPR003347; KEGG: fjo:Fjoh_0802 transcription factor jumonji domaiN-containing protein; SMART: transcription factor jumonji jmjC domaiN-containing protein; SPTR: Putative uncharacterized protein
YP_003999350.1	COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: sli:Slin_5815 nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: Nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC
YP_003999351.1	InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480)
YP_003999352.1	KEGG: nha:Nham_0959 autoinducer synthesis protein; SPTR: Glycerophosphoryl diester phosphodiesterase
YP_003999353.1	InterPro IPR012359:IPR004518; KEGG: phe:Phep_3808 MazG nucleotide pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: MazG nucleotide pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase domain
YP_003999354.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterPro IPR004424:IPR006204:IPR013750; KEGG: dfe:Dfer_4111 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_003999355.1	COGs: COG0051 Ribosomal protein S10; InterPro IPR005731:IPR018268:IPR001848; KEGG: dfe:Dfer_4342 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_003999356.1	KEGG: fjo:Fjoh_1859 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999357.1	KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999358.1	COGs: COG0612 ZN-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_3480 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; PRIAM: processing peptidase; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_003999359.1	KEGG: sli:Slin_1164 domain of unknown function DUF1735; SPTR: Putative uncharacterized protein
YP_003999360.1	KEGG: dfe:Dfer_2722 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999361.1	InterPro IPR012910; KEGG: sli:Slin_1167 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_003999362.1	KEGG: rno:297342 ELMO/CED-12 domain containing 3; SPTR: ELMO domaiN-containing protein 3
YP_003999364.1	COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: chu:CHU_2493 dithiol-disulfide isomerase; PFAM: DSBA oxidoreductase; SPTR: Dithiol-disulfide isomerase; PFAM: DSBA-like thioredoxin domain
YP_003999365.1	InterPro IPR020018; KEGG: sli:Slin_5969 gliding motility-associated lipoprotein GldH; SPTR: Gliding motility-associated lipoprotein GldH; TIGRFAM: gliding motility-associated lipoprotein GldH; TIGRFAM: gliding motility-associated lipoprotein GldH
YP_003999366.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: sli:Slin_5965 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_003999367.1	COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR011761:IPR000115:IPR020562:IPR020561:IPR 020560; KEGG: dfe:Dfer_3601 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_003999368.1	KEGG: dfe:Dfer_4093 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999369.1	KEGG: dfe:Dfer_3229 hypothetical protein; SPTR: BP8 protein
YP_003999370.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942:IPR018496:IPR006145:IPR000748; KEGG: dfe:Dfer_3919 pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_003999371.1	KEGG: sli:Slin_4251 membrane protein; SPTR: Putative uncharacterized protein
YP_003999372.1	KEGG: sli:Slin_4252 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999373.1	COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase; PFAM: Carbamoyltransferase
YP_003999374.1	KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999375.1	COGs: COG4692 neuraminidase (sialidase); KEGG: sus:Acid_2658 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein; PFAM: BNR/Asp-box repeat
YP_003999376.1	COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC family protein; SPTR: YdjC family protein; PFAM: YdjC-like protein
YP_003999377.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: lbl:LBL_0851 sodium-dependent transporter; PFAM: Bile acid:sodium symporter; SPTR: Sodium-dependent transporter; PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter
YP_003999378.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1
YP_003999379.1	InterPro IPR004843; KEGG: zpr:ZPR_2508 calcineuriN-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: CalcineuriN-like phosphoesterase; PFAM: CalcineuriN-like phosphoesterase
YP_003999380.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003999381.1	KEGG: dfe:Dfer_3219 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999382.1	KEGG: dfe:Dfer_3218 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999383.1	COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: sli:Slin_6614 PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein PqaA type; SPTR: PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein
YP_003999384.1	KEGG: dfe:Dfer_3221 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999385.1	COGs: COG1609 Transcriptional regulators; InterPro IPR018060:IPR018062:IPR001761:IPR000005; KEGG: sli:Slin_6583 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; manually curated; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family; family
YP_003999386.1	InterPro IPR019563; KEGG: fjo:Fjoh_1209 hypothetical protein; PFAM: Glycoside hydrolase 97; SPTR: Candidate alpha-glucosidase; Glycoside hydrolase family 97; PFAM: Glycoside hydrolase 97
YP_003999387.1	KEGG: fba:FIC_00448 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999388.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672:IPR018189; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase
YP_003999389.1	COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: bfr:BF3098 glycosylhydrolase; PFAM: glycoside hydrolase family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Putative glycosylhydrolase; PFAM: Glycosyl hydrolases family 25
YP_003999390.1	COGs: COG4099 peptidase; InterPro IPR003140; KEGG: dfe:Dfer_5020 phospholipase/carboxylesterase; PFAM: phospholipase/Carboxylesterase; SPTR: Phospholipase/Carboxylesterase; PFAM: Phospholipase/Carboxylesterase
YP_003999391.1	KEGG: dfe:Dfer_5037 HPr kinase; SPTR: HPr kinase
YP_003999392.1	KEGG: dfe:Dfer_5035 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999393.1	KEGG: dfe:Dfer_5036 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999394.1	KEGG: sli:Slin_0567 hypothetical protein; SPTR: Lipoprotein, putative
YP_003999395.1	COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR001750; KEGG: dfe:Dfer_3394 protoN-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain N
YP_003999396.1	COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR001750:IPR010227; KEGG: sli:Slin_4908 protoN-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain M
YP_003999397.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003916:IPR001516:IPR001750:IPR003945; KEGG: sli:Slin_4909 protoN-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: ProtoN-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: protoN-translocating NADH-quinone oxidoreductase, chain L
YP_003999398.1	COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: dfe:Dfer_3598 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003999399.1	COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: dfe:Dfer_5212 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_003999400.1	KEGG: dfe:Dfer_5211 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999401.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904:IPR002347:IPR002198; KEGG: dfe:Dfer_3922 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003999402.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR017896:IPR016166:IPR017900:IPR006094:IPR 004113; KEGG: phe:Phep_3343 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; SPTR: D-lactate dehydrogenase (Cytochrome); PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain
YP_003999403.1	InterPro IPR000620; KEGG: coc:Coch_1833 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Integral membrane protein; PFAM: EamA-like transporter family
YP_003999404.1	KEGG: msv:Mesil_3342 phosphoribosylglycinamide synthetase, N-domain protein; SPTR: Phosphoribosylglycinamide synthetase, N-domain protein
YP_003999405.1	KEGG: mpd:MCP_0930 hypothetical protein; SPTR: Serine/threonine protein kinase
YP_003999406.1	KEGG: snc:HMPREF0837_10106 maltose/maltodextrin ABC superfamily transporter ATP-binding protein; SPTR: Maltose/maltodextrin ABC transporter, maltose/maltodextriN-binding protein
YP_003999407.1	COGs: COG4585 Signal transduction histidine kinase; InterProIPR019734:IPR005467:IPR013026:IPR001440:IPR 011712:IPR003594; KEGG: phe:Phep_2111 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: ATP-binding region ATPase domain protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003999408.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: dfe:Dfer_4502 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003999409.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: sli:Slin_3170 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003999410.1	COGs: COG1158 Transcription termination factor; InterProIPR011129:IPR003593:IPR011113:IPR000194:IPR 004665; KEGG: sli:Slin_1295 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase; SPTR: Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_003999411.1	COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: dfe:Dfer_5091 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_003999412.1	COGs: COG0335 Ribosomal protein L19; InterPro IPR001857:IPR018257; KEGG: dfe:Dfer_5090 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_003999413.1	InterPro IPR001647; KEGG: fjo:Fjoh_3291 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003999414.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003999415.1	InterPro IPR004360; KEGG: dfe:Dfer_3641 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003999416.1	InterPro IPR018087:IPR004360; KEGG: ent:Ent638_0725 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003999417.1	COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: dfe:Dfer_1026 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: Alanine racemase domain protein; PFAM: Alanine racemase, N-terminal domain
YP_003999418.1	InterPro IPR020818; KEGG: sli:Slin_1082 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: Chaperonin Cpn10; PFAM: Chaperonin 10 Kd subunit
YP_003999419.1	COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR003567:IPR002541; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF
YP_003999420.1	KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999421.1	InterPro IPR012910; KEGG: phe:Phep_4139 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003999422.1	InterPro IPR012944; KEGG: phe:Phep_4138 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Outer membrane protein; PFAM: SusD family
YP_003999423.1	COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391:IPR004843:IPR002372; KEGG: cpi:Cpin_6658 metallophosphoesterase; PFAM: metallophosphoesterase; Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein; PFAM: CalcineuriN-like phosphoesterase; PQQ enzyme repeat
YP_003999424.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR014018:IPR000185:IPR020937:IPR011115:IPR 011130:IPR001650:IPR011116; KEGG: sli:Slin_4938 preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_003999425.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR018062:IPR020449:IPR000005; KEGG: phe:Phep_3986 helix-turN-helix-domain containing protein AraC type; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Putative AraC-family regulatory protein; PFAM: Bacterial regulatory helix-turN-helix proteins, AraC family
YP_003999426.1	InterPro IPR018247:IPR002105:IPR012910:IPR000531; KEGG: sli:Slin_6529 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003999427.1	InterPro IPR012944; KEGG: sli:Slin_6530 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family
YP_003999428.1	InterPro IPR002909; KEGG: sli:Slin_6531 cell surface receptor IPT/TIG domain protein; PFAM: cell surface receptor IPT/TIG domain protein; SPTR: Cell surface receptor IPT/TIG domain protein; PFAM: IPT/TIG domain
YP_003999429.1	COGs: COG4124 Beta-mannanase; InterPro IPR000805:IPR016714; KEGG: fjo:Fjoh_4953 glycoside hydrolase family protein; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannase; PFAM: Glycosyl hydrolase family 26
YP_003999430.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: zpr:ZPR_0356 Na+/glucose symporter; PFAM: Na+/solute symporter; SPTR: Na+/glucose symporter; PFAM: Sodium:solute symporter family
YP_003999431.1	COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: rmr:Rmar_2440 glycosidase PH1107-related protein; PFAM: glycosidase related protein; SPTR: Glycosidase PH1107-related protein; PFAM: Domain of unknown function (DUF377)
YP_003999432.1	COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: phe:Phep_3983 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: Putative N-acyl-D-glucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
YP_003999433.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_1730 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_003999434.1	KEGG: fjo:Fjoh_2789 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999435.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR005834:IPR010023:IPR006549; KEGG: gfo:GFO_1811 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_003999436.1	KEGG: sli:Slin_6803 response regulator receiver protein; SPTR: Transcriptional regulator, LytTr family
YP_003999437.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179:IPR000774; KEGG: cpi:Cpin_1944 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_003999438.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151:IPR001478:IPR004447; KEGG: dfe:Dfer_4634 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_003999439.1	COGs: COG0531 Amino acid transporter; InterPro IPR002293:IPR004841; KEGG: dfe:Dfer_3770 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3
YP_003999440.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR019775; KEGG: dfe:Dfer_3558 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_003999441.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: sli:Slin_5745 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_003999442.1	KEGG: fgr:FG11306.1 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999443.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dfe:Dfer_1164 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003999444.1	InterPro IPR005545; KEGG: gbm:Gbem_0916 YciI-like protein; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain
YP_003999445.1	COGs: COG0627 esterase; InterPro IPR000801; KEGG: dfe:Dfer_5713 esterase; PFAM: esterase; SPTR: Acetyl esterase; PFAM: Putative esterase
YP_003999446.1	COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR000795:IPR004161:IPR004548:IPR005225; KEGG: sli:Slin_1118 peptide chain release factor 3; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; SPTR: Peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3
YP_003999447.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR008144:IPR018022:IPR002627; KEGG: sli:Slin_0297 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_003999448.1	KEGG: cja:CJA_2037 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999449.1	KEGG: bpo:BP951000_0760 hypothetical protein; SPTR: Putative uncharacterized protein FNV0213
YP_003999450.1	InterPro IPR019115; KEGG: dfe:Dfer_2378 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_003999451.1	KEGG: dfe:Dfer_2379 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor
YP_003999453.1	KEGG: tva:TVAG_284520 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999454.1	COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR013093:IPR019489:IPR004491:IPR003593; KEGG: dfe:Dfer_4809 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent protease HslVU, ATPase subunit
YP_003999455.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: fjo:Fjoh_1432 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_003999456.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917:IPR004839; KEGG: sli:Slin_3535 glycine C-acetyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; PFAM: Aminotransferase class I and II
YP_003999457.1	KEGG: aas:Aasi_1392 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999458.1	COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: dfe:Dfer_3256 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; SPTR: MaoC domain protein dehydratase; PFAM: MaoC like domain
YP_003999459.1	KEGG: sli:Slin_0400 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003999460.1	COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: dfe:Dfer_3942 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: Diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase catalytic domain
YP_003999461.1	COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950:IPR017228; KEGG: dfe:Dfer_3941 translation initiation factor SUI1; PFAM: translation initiation factor SUI1; SPTR: Translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic
YP_003999462.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR018456:IPR000109:IPR005279; KEGG: sli:Slin_3596 amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: Amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_003999463.1	COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: dfe:Dfer_4966 ABC transporter, permease protein, putative; SPTR: ABC transporter, permease protein, putative
YP_003999464.1	COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: dfe:Dfer_4965 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_003999465.1	KEGG: dfe:Dfer_0906 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999466.1	COGs: COG5009 Membrane carboxypeptidase/penicilliN-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_4764 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicilliN-binding protein transpeptidase; SPTR: Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_003999467.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR006073:IPR002917:IPR013029:IPR004396; KEGG: cpi:Cpin_3722 GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_003999468.1	KEGG: vpo:Kpol_541p23 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999469.1	COGs: COG0312 ZN-dependent protease and their inactivated homologs; InterPro IPR002510:IPR006311; KEGG: sli:Slin_1335 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003999470.1	COGs: COG0312 ZN-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: dfe:Dfer_2098 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003999471.1	COGs: COG0312 ZN-dependent protease and their inactivated homologs; InterPro IPR002510:IPR006311; KEGG: dfe:Dfer_2097 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003999472.1	COGs: COG0312 ZN-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: sli:Slin_1331 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003999473.1	KEGG: sli:Slin_1325 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999474.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703:IPR016366; KEGG: sli:Slin_1324 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: ATPase associated with various cellular activities AAA_3; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003999475.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_1323 protein of unknown function DUF58; PFAM: protein of unknown function DUF58; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_003999476.1	InterPro IPR011933; KEGG: sli:Slin_1322 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain
YP_003999477.1	KEGG: sli:Slin_1321 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999478.1	KEGG: dfe:Dfer_2090 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999479.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR005467:IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003999480.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR014016:IPR014017:IPR000212; KEGG: gfo:GFO_3376 UvrD/REP family helicase; PFAM: UvrD/REP helicase; SPTR: ATP-dependent helicase; PFAM: UvrD/REP helicase
YP_003999481.1	InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_003999482.1	COGs: COG0283 Cytidylate kinase; InterPro IPR011994:IPR003136; KEGG: dfe:Dfer_5748 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_003999483.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003999484.1	KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15)
YP_003999485.1	InterPro IPR019861; KEGG: sli:Slin_3585 hypothetical protein; SPTR: Putative membrane protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_003999486.1	COGs: COG2885 Outer membrane protein and related peptidoglycaN-associated (lipo)protein; InterPro IPR006664:IPR006665:IPR011659; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_003999487.1	InterPro IPR019861; KEGG: sli:Slin_3583 hypothetical protein; SPTR: Putative membrane protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein
YP_003999489.1	COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017:IPR005475:IPR011603; KEGG: dfe:Dfer_5752 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component
YP_003999490.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR003016:IPR000089:IPR004167:IPR001078:IPR 006255; KEGG: sli:Slin_5028 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domaiN-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domaiN-containing protein; E3 binding domain protein; SPTR: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; BiotiN-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
YP_003999491.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR012999:IPR013027:IPR000815:IPR004099:IPR 006258; KEGG: sli:Slin_6035 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003999492.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: transposase IS4 family protein; SPTR: MS156, transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772)
YP_003999493.1	COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: sli:Slin_3565 protein of unknown function DUF418; PFAM: protein of unknown function DUF418; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF418)
YP_003999494.1	COGs: COG2355 ZN-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: pdi:BDI_1327 peptidase; PFAM: peptidase M19 renal dipeptidase; SPTR: Putative peptidase; PFAM: Membrane dipeptidase (Peptidase family M19)
YP_003999495.1	COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: cpi:Cpin_7001 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_003999496.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sli:Slin_3234 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase family protein; PFAM: Amidohydrolase family
YP_003999497.1	KEGG: cpi:Cpin_1878 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999498.1	KEGG: phe:Phep_3468 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999499.1	COGs: COG0308 Aminopeptidase N; KEGG: cpi:Cpin_1880 aminopeptidase; SPTR: Putative aminopeptidase
YP_003999500.1	InterPro IPR005144:IPR007560; KEGG: zpr:ZPR_3407 nuclease; PFAM: restriction endonuclease; SPTR: Putative uncharacterized protein; PFAM: Restriction endonuclease
YP_003999501.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: sli:Slin_0337 transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turN-helix protein, lysR family; LysR substrate binding domain
YP_003999502.1	COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR004360:IPR005956; KEGG: cpi:Cpin_5420 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase
YP_003999503.1	COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: fjo:Fjoh_0728 homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase; SPTR: Homogentisate 1,2-dioxygenase; PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase
YP_003999504.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR015377:IPR002529:IPR005959; KEGG: gfo:GFO_2263 fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: fumarylacetoacetase
YP_003999505.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: cpi:Cpin_0500 flavin reductase domain protein FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SPTR: Nitrilotriacetate monooxygenase component B; PFAM: Flavin reductase like domain
YP_003999506.1	COGs: COG2367 Beta-lactamase class A; InterPro IPR000871:IPR001466; KEGG: cpi:Cpin_1435 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003999507.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: cat:CA2559_09106 cobalt-zinc-cadmium resistance protein CzcD; PFAM: cation efflux protein; SPTR: Cobalt-zinc-cadmium resistance protein czcD; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_003999508.1	InterPro IPR001173; KEGG: cpi:Cpin_6508 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003999509.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_1196 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain
YP_003999510.1	COGs: COG0854 Pyridoxal phosphate biosynthesis protein; InterPro IPR004569; KEGG: dfe:Dfer_4728 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_003999511.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: sli:Slin_4989 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Yqey-like protein
YP_003999512.1	InterPro IPR003825; KEGG: dfe:Dfer_4730 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein
YP_003999513.1	KEGG: gfo:GFO_3192 phosphate-selective porin O and P; SPTR: Phosphate-selective porin O and P; PFAM: Phosphate-selective porin O and P
YP_003999514.1	KEGG: cpi:Cpin_5542 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic glutathione synthetase, ATP-grasp domain
YP_003999515.1	COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018164:IPR018165:IPR012947:IPR003156:IPR 002318; KEGG: dfe:Dfer_5667 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_003999516.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; InterPro IPR013471; KEGG: chu:CHU_1914 ribonuclease Z; SPTR: Ribonuclease Z; TIGRFAM: ribonuclease Z; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z
YP_003999517.1	InterPro IPR002645; KEGG: sli:Slin_2671 sulfate transporter/antisigma-factor antagonist STAS; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate transporter/antisigma-factor antagonist STAS
YP_003999518.1	COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR006407:IPR 006589; KEGG: dfe:Dfer_1955 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase
YP_003999519.1	InterPro IPR000620; KEGG: fjo:Fjoh_4038 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family
YP_003999520.1	COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase
YP_003999521.1	COGs: COG1312 D-mannonate dehydratase; InterPro IPR004628; KEGG: phe:Phep_2262 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase; TIGRFAM: mannonate dehydratase; PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase
YP_003999522.1	KEGG: dfe:Dfer_4136 Rieske (2Fe-2S) domain protein; SPTR: Putative uncharacterized protein
YP_003999523.1	KEGG: sli:Slin_1752 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2452)
YP_003999524.1	COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: dfe:Dfer_1217 protein of unknown function DUF55; PFAM: protein of unknown function DUF55; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF55
YP_003999525.1	KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999526.1	KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999527.1	InterPro IPR019734:IPR013026:IPR001440; KEGG: sli:Slin_2220 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat
YP_003999528.1	COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR018158:IPR006195:IPR004095:IPR012947:IPR 002314:IPR004154:IPR002320; KEGG: sli:Slin_2219 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domaiN-containing protein; AnticodoN-binding domain protein; SPTR: Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_003999529.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019813:IPR019814:IPR019815:IPR001288; KEGG: sli:Slin_2218 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_003999530.1	KEGG: rmr:Rmar_1611 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999531.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR005399:IPR001395; KEGG: pdi:BDI_1188 oxidoreductase; PFAM: aldo/keto reductase; SPTR: Putative uncharacterized protein; PFAM: Aldo/keto reductase family
YP_003999532.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR008824:IPR003959:IPR003593; KEGG: dfe:Dfer_5733 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: AAA ATPase central domain protein; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)
YP_003999533.1	KEGG: gur:Gura_3881 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999534.1	KEGG: brm:Bmur_0975 response regulator receiver protein; SPTR: Putative uncharacterized protein
YP_003999535.1	KEGG: phe:Phep_3540 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999536.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003999537.1	COGs: COG4123 O-methyltransferase; InterPro IPR002052:IPR020596:IPR007848; KEGG: dfe:Dfer_5119 methyltransferase small; PFAM: methyltransferase small; SPTR: tRNA (adenine-N(6)-)-methyltransferase; PFAM: Methyltransferase small domain
YP_003999538.1	COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: dfe:Dfer_5118 ribonuclease H-related protein; SPTR: Ribonuclease H-related protein; PFAM: RNase H; Caulimovirus viroplasmin
YP_003999539.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011761:IPR011127:IPR011095; KEGG: dfe:Dfer_4937 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003999540.1	COGs: COG0694 ThioredoxiN-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogeN-fixing NifU domain protein; PFAM: nitrogeN-fixing NifU domain protein; SPTR: NitrogeN-fixing NifU domain protein; PFAM: NifU-like domain
YP_003999541.1	COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: coc:Coch_0827 SCP-like extracellular; PFAM: SCP-like extracellular; SPTR: Putative lipoprotein; PFAM: Cysteine-rich secretory protein family
YP_003999542.1	KEGG: sli:Slin_0499 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: OmpA family
YP_003999543.1	InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA domain protein; SPTR: Lipoprotein, putative; PFAM: GSCFA family
YP_003999544.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR002744:IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: Putative uncharacterized protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ
YP_003999545.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2368 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003999546.1	COGs: COG2367 Beta-lactamase class A; KEGG: phe:Phep_3104 beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_003999547.1	KEGG: cpi:Cpin_1415 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003999548.1	COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284; KEGG: nml:Namu_1556 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003999549.1	InterPro IPR005545; KEGG: zpr:ZPR_3313 DGPFAETKE domaiN-containing protein; PFAM: YCII-related; SPTR: DGPFAETKE domaiN-containing protein; PFAM: YCII-related domain
YP_003999550.1	KEGG: coc:Coch_2117 4Fe-4S ferredoxin iroN-sulfur binding domaiN-containing protein; SPTR: Ferredoxin III
YP_003999551.1	COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: zpr:ZPR_0087 collagenase; PFAM: peptidase U32; SPTR: Collagenase; PFAM: Peptidase family U32
YP_003999552.1	KEGG: nmu:Nmul_A0300 O-antigen polymerase; SPTR: O-antigen polymerase
YP_003999553.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: rbi:RB2501_05285 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003999554.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: str:Sterm_1803 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003999555.1	KEGG: osa:4329331 hypothetical protein; SPTR: Os02g0468200 protein
YP_003999556.1	KEGG: nmg:Nmag_3254 NADH-quinone oxidoreductase, B subunit; SPTR: Putative uncharacterized protein
YP_003999557.1	KEGG: bcq:BCQ_0205 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999558.1	KEGG: dfe:Dfer_1641 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999559.1	KEGG: dfe:Dfer_1637 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Farnesoic acid 0-methyl transferase
YP_003999560.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: sli:Slin_3170 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_003999561.1	KEGG: sli:Slin_4635 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999562.1	KEGG: sli:Slin_4634 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999563.1	KEGG: sli:Slin_4633 transmembrane anti-sigma factor; SPTR: Putative transmembrane anti-sigma factor
YP_003999564.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_4632 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003999565.1	InterPro IPR006121; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein; PFAM: Heavy-metal-associated domain
YP_003999566.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR000150:IPR001757:IPR001756:IPR 006121:IPR008250:IPR005834:IPR006403:IPR006416; KEGG: chu:CHU_1499 catioN-transporting ATPase; copper-exporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-exporting ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003999567.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: sli:Slin_1762 ABC transporter related protein; PFAM: ABC transporter related; SPTR: ABC transporter related protein; PFAM: ABC transporter
YP_003999568.1	KEGG: sli:Slin_1761 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999569.1	COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002942:IPR002305; KEGG: dfe:Dfer_3297 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_003999570.1	KEGG: sli:Slin_3627 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999571.1	KEGG: fph:Fphi_1177 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999572.1	KEGG: pcb:PC103409.00.0 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999573.1	COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: dfe:Dfer_3302 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_003999574.1	KEGG: dfe:Dfer_3301 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999575.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: dfe:Dfer_3300 queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; SPTR: Queuosine biosynthesis protein; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003999576.1	KEGG: dfe:Dfer_4105 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999577.1	KEGG: tdn:Suden_1973 hypothetical protein; SPTR: GDP-L-fucose synthase
YP_003999578.1	KEGG: chu:CHU_3661 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999579.1	COGs: COG0339 ZN-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Putative peptidyl-dipeptidase; PFAM: Peptidase family M3
YP_003999580.1	KEGG: ptm:GSPATT00009006001 hypothetical protein; SPTR: PMCA13 protein
YP_003999581.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: dfe:Dfer_0455 catalytic domain of components of various dehydrogenase complexes; PFAM: catalytic domaiN-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domaiN-containing protein; E3 binding domain protein; SPTR: Catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; BiotiN-requiring enzyme
YP_003999582.1	COGs: COG1058 nucleotide-utilizing enzyme related to molybdopteriN-biosynthesis enzyme MoeA; InterPro IPR001453:IPR008136:IPR008135; KEGG: dfe:Dfer_0456 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: Competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain
YP_003999583.1	KEGG: sli:Slin_1358 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999584.1	InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC
YP_003999585.1	COGs: COG1404 SubtilisiN-like serine protease; InterPro IPR000209; KEGG: dfe:Dfer_5007 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase families S8 and S53 domain protein; PFAM: Subtilase family
YP_003999586.1	COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR018198:IPR013820:IPR013115:IPR020621; KEGG: sli:Slin_1783 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase
YP_003999587.1	COGs: COG0141 Histidinol dehydrogenase; InterPro IPR001692:IPR012131; KEGG: dfe:Dfer_1141 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_003999588.1	COGs: COG2207 AraC-type DNA-binding domaiN-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_0873 transcriptional regulator, AraC family; PFAM: helix-turN-helix- domain containing protein AraC type; SMART: Helix-turN-helix, AraC domain; SPTR: Transcriptional regulator, AraC family
YP_003999589.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: phe:Phep_2339 OsmC family protein; PFAM: OsmC family protein; SPTR: Peroxiredoxin; TIGRFAM: peroxiredoxin, OsmC subfamily; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily
YP_003999590.1	KEGG: ttu:TERTU_4080 phospholipase D catalytic domain protein; SPTR: Phospholipase D catalytic domain protein
YP_003999591.1	KEGG: tet:TTHERM_00637010 Viral A-type inclusion protein repeat containing protein; SPTR: Integral membrane sensor signal transduction histidine kinase
YP_003999592.1	KEGG: tet:TTHERM_00573210 hypothetical protein
YP_003999593.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterProIPR020610:IPR020613:IPR020616:IPR020617:IPR 002155; KEGG: dfe:Dfer_2430 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003999594.1	InterPro IPR017936; KEGG: bvu:BVU_1978 disulphide-isomerase; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003999595.1	KEGG: zpr:ZPR_2714 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999596.1	COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: sli:Slin_2409 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; PFAM: Inorganic pyrophosphatase
YP_003999597.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR001757:IPR008250:IPR005834:IPR 006404:IPR006416; KEGG: spc:Sputcn32_1966 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Zinc-exporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_003999598.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: phe:Phep_2685 ferric uptake regulator family protein; SPTR: Fur family transcriptional regulator protein; PFAM: Ferric uptake regulator family
YP_003999599.1	KEGG: sli:Slin_6747 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999600.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_1589 efflux transporter, RND family, MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003999601.1	COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_1588 heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_003999602.1	KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated
YP_003999603.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fps:FP0881 membrane fusion efflux protein precursor; SPTR: Membrane fusion efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003999604.1	COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR004763; KEGG: fjo:Fjoh_4462 CzcA family heavy metal efflux protein; PFAM: acriflavin resistance protein; SPTR: Possible RND superfamily resistance-nodulatioN-cell division [ligand]:proton (H+) antiporter; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_003999605.1	KEGG: fjo:Fjoh_3934 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999606.1	COGs: COG0412 Dienelactone hydrolase; KEGG: sli:Slin_1487 carboxymethylenebutenolidase; PRIAM: Carboxymethylenebutenolidase; SPTR: Carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase family
YP_003999607.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002410:IPR000073; KEGG: cpi:Cpin_4568 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Proline iminopeptidase; PFAM: alpha/beta hydrolase fold
YP_003999608.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fjo:Fjoh_0563 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003999609.1	KEGG: fjo:Fjoh_0562 hypothetical protein; SPTR: Putative uncharacterized protein
YP_003999610.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_003999611.1	COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146:IPR005864; KEGG: dfe:Dfer_5023 ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_003999612.1	InterPro IPR020537:IPR000454:IPR002379:IPR005953; KEGG: sli:Slin_3215 ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: ATP synthase subunit c; TIGRFAM: ATP synthase F0, C subunit; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_003999613.1	COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: sli:Slin_3216 ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_003999614.1	KEGG: dfe:Dfer_5026 hypothetical protein; SPTR: Putative uncharacterized protein