-- dump date 20140619_120619 -- class Genbank::CDS -- table cds_note -- id note YP_001355391.1 KEGG: mkm:Mkms_3589 conserved hypothetical protein YP_001355394.1 PFAM: helix-turn-helix domain protein YP_001355396.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: art:Arth_4386 resolvase YP_001355398.1 KEGG: ani:AN5649.2 hypothetical protein YP_001355399.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: art:Arth_4176 cobyrinic acid a,c-diamide synthase YP_001361968.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO0427 hydrolase YP_001361966.1 PFAM: regulatory protein TetR; KEGG: art:Arth_4005 transcriptional regulator, TetR family YP_001361965.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: lxx:Lxx14700 NAD dependent epimerase/dehydratase YP_001361964.1 PFAM: regulatory protein MarR; KEGG: fal:FRAAL4003 transcriptional regulator of the MarR family YP_001361963.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: alcohol dehydrogenase, zinc-containing YP_001361962.1 PFAM: regulatory protein TetR; KEGG: sco:SCO4270 transcriptional regulator YP_001361961.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA1321 short chain dehydrogenase YP_001361958.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0059 zinc-binding oxidoreductase YP_001361957.1 KEGG: rha:RHA1_ro00484 hypothetical protein YP_001361956.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro02950 probable transcriptional regulator, TetR family YP_001361955.1 SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL3639 DNA-binding protein, HTH regulator YP_001361954.1 PFAM: alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0059 zinc-binding oxidoreductase YP_001361953.1 PFAM: NmrA family protein; KEGG: mkm:Mkms_1069 NmrA family protein YP_001361952.1 PFAM: FAD linked oxidase domain protein; KEGG: nfa:nfa45960 oxidoreductase YP_001361951.1 KEGG: sco:SCO0503 hypothetical protein YP_001361950.1 PFAM: regulatory protein TetR; KEGG: sco:SCO4952 TetR-family transcriptional regulator YP_001361949.1 KEGG: rxy:Rxyl_2514 transposase YP_001361948.1 KEGG: ppe:PEPE_1799 hypothetical protein YP_001361947.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: tel:tlr0911 hypothetical protein YP_001361945.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tfu:Tfu_3055 anti-sigma factor antagonist YP_001361944.1 KEGG: mva:Mvan_5794 hypothetical protein YP_001361943.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: mkm:Mkms_0782 phospholipase D/transphosphatidylase YP_001361942.1 PFAM: diacylglycerol kinase catalytic region; KEGG: aau:AAur_4154 diacylglycerol kinase catalytic domain YP_001361941.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: nfa:nfa2970 hypothetical protein YP_001361940.1 PFAM: GCN5-related N-acetyltransferase YP_001361939.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: pde:Pden_3348 methyltransferase type 12 YP_001361938.1 PFAM: protein of unknown function DUF1330; KEGG: bja:bll5372 hypothetical protein YP_001361937.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO2477 3-oxoacyl-(ACP) reductase YP_001361936.1 PFAM: regulatory protein TetR; KEGG: sma:SAV705 TetR-family transcriptional regulator YP_001361935.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV519 hydrolase YP_001361934.1 KEGG: sco:SCO2993 hypothetical protein YP_001361930.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: art:Arth_2739 transcriptional regulator, MerR family YP_001361929.1 PFAM: regulatory protein TetR; KEGG: msm:MSMEG_1596 transcriptional regulator YP_001361928.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: msm:MSMEG_1595 oxidoreductase YP_001361925.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pau:PA14_58510 transcriptional regulator, AsnC family YP_001361924.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nca:Noca_4506 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase YP_001361923.1 KEGG: bch:Bcen2424_0172 transposase and inactivated derivatives-like protein YP_001361922.1 KEGG: bps:BPSS0686 hypothetical protein YP_001361920.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:blr1601 ABC transporter substrate-binding protein YP_001361919.1 PFAM: ABC transporter inner membrane protein; KEGG: msm:MSMEG_4386 ABC transporter permease protein YP_001361918.1 PFAM: ABC transporter inner membrane protein; KEGG: bja:blr1603 ABC transporter permease protein YP_001361917.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_4388 ABC transporter ATP-binding protein YP_001361916.1 KEGG: msm:MSMEG_2841 monooxygenase YP_001361915.1 KEGG: rno:687202 similar to Zinc finger protein ZFPM1 (Zinc finger protein multitype 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) YP_001361914.1 PFAM: ABC transporter inner membrane protein; KEGG: pac:PPA0400 transport system permease protein YP_001361913.1 KEGG: pac:PPA0399 sugar ABC transporter YP_001361912.1 PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0398 conserved protein, sugar-binding protein YP_001361911.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: pac:PPA0397 oxidoreductase with transcriptional repressor domain YP_001361910.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: sco:SCO1043 transcriptional regulatory protein YP_001361909.1 PFAM: sugar isomerase (SIS); KEGG: sma:SAV1446 putave phosphosugar isomerase YP_001361908.1 PFAM: ROK family protein; KEGG: art:Arth_1710 ROK family protein YP_001361907.1 PFAM: amidohydrolase; KEGG: tfu:Tfu_2473 N-acetylglucosamine-6-phosphate deacetylase YP_001361906.1 PFAM: PfkB domain protein; KEGG: aau:AAur_1468 sugar kinase YP_001361905.1 TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; KEGG: aau:AAur_1469 fructose/tagatose bisphosphate aldolase YP_001361904.1 KEGG: tfu:Tfu_1545 hypothetical protein YP_001361903.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: pac:PPA1010 transcriptional regulatory protein YP_001361902.1 KEGG: bth:BT_3020 hypothetical protein YP_001361901.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR domain protein; KEGG: msm:MSMEG_1968 oxidoreductase YP_001361900.1 PFAM: regulatory protein MerR; KEGG: msm:MSMEG_1969 MerR-family protein transcriptional regulator YP_001361898.1 KEGG: fra:Francci3_4109 PilT protein-like YP_001361895.1 KEGG: mes:Meso_4442 hypothetical protein YP_001361894.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rha:RHA1_ro02575 probable 2-hydroxy-3-oxopropionate reductase YP_001361893.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_4143 transcriptional regulator, GntR family YP_001361892.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3326 extracellular solute-binding protein, family 1 YP_001361891.1 PFAM: ABC transporter inner membrane protein; KEGG: tfu:Tfu_1704 transport system permease ABC transporter protein YP_001361890.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_3312 ABC-type sugar transport system, permease component YP_001361889.1 KEGG: rle:RL3795 hypothetical protein YP_001361888.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: rle:RL3799 hydroxypyruvate isomerase YP_001361887.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: abo:ABO_0508 D-isomer specific 2-hydroxyacid dehydrogenase family YP_001361886.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO0594 methyltransferase YP_001361885.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro02544 hypothetical protein YP_001361884.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV373 LysR-family transcriptional regulator YP_001361883.1 PFAM: inositol monophosphatase; KEGG: sma:SAV372 myo-inositol 1-monophosphatase YP_001361882.1 KEGG: tfu:Tfu_1230 hypothetical protein YP_001361881.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: vfi:VF0090 2-dehydro-3-deoxyphosphogluconate aldolase YP_001361880.1 PFAM: PfkB domain protein; KEGG: ace:Acel_1214 PfkB domain protein YP_001361879.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_2914 L-idonate 5-dehydrogenase YP_001361878.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_2912 inner membrane metabolite transport protein YdfJ YP_001361877.1 PFAM: mannitol dehydrogenase domain; mannitol dehydrogenase rossman domain; KEGG: ace:Acel_0905 mannitol dehydrogenase, C-terminal domain YP_001361876.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: msm:MSMEG_2909 starvation-sensing protein RspA YP_001361875.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2910 transcriptional regulator, GntR family protein YP_001361873.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: tfu:Tfu_2581 inosine-uridine preferring nucleoside hydrolase YP_001361872.1 PFAM: inner-membrane translocator; KEGG: sma:SAV6654 sugar ABC transporter permease protein YP_001361871.1 PFAM: inner-membrane translocator; KEGG: sma:SAV6655 ABC transporter permease YP_001361870.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV6656 sugar ABC transporter ATP-binding protein YP_001361869.1 PFAM: basic membrane lipoprotein; KEGG: sma:SAV6657 lipoprotein YP_001361868.1 PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_6720 epoxide hydrolase YP_001361867.1 PFAM: regulatory protein MarR; KEGG: bat:BAS0733 transcriptional regulator, MarR family YP_001361866.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B0811 GCN5-related N-acetyltransferase YP_001361865.1 PFAM: regulatory protein TetR; KEGG: mav:MAV_0586 transcriptional regulator, TetR family protein YP_001361864.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mav:MAV_0588 oxidoreductase YP_001361863.1 KEGG: fra:Francci3_1501 hypothetical protein YP_001361862.1 KEGG: fra:Francci3_1502 PilT protein-like YP_001361859.1 KEGG: ace:Acel_1830 hypothetical protein YP_001361858.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ace:Acel_1831 periplasmic sensor signal transduction histidine kinase YP_001361857.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa27150 two-component system response regulator YP_001361856.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001361854.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na? antiporter NhaA; sodium/hydrogen exchanger; KEGG: fra:Francci3_2583 Na+/H+ antiporter NhaA YP_001361853.1 PFAM: band 7 protein; Flotillin domain protein; KEGG: sco:SCO3607 secreted protein YP_001361852.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL4755 membrane phosphatase YP_001361851.1 PFAM: protein of unknown function DUF204; KEGG: cth:Cthe_1420 protein of unknown function DUF204 YP_001361850.1 KEGG: lxx:Lxx12230 hypothetical protein YP_001361848.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bth:BT_0981 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') YP_001361847.1 PFAM: Saccharopine dehydrogenase; KEGG: art:Arth_3626 saccharopine dehydrogenase YP_001361846.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV923 hydrolase YP_001361845.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor YP_001361844.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_3602 chemotaxis sensory transducer YP_001361843.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_3270 SN-glycerol-3-phosphate ABC transporter, ATP-binding protein YP_001361842.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mkm:Mkms_2603 ABC transporter YP_001361841.1 PFAM: ABC transporter inner membrane protein; KEGG: mkm:Mkms_2602 ABC transporter inner membrane protein YP_001361840.1 PFAM: ABC transporter inner membrane protein; KEGG: msm:MSMEG_3267 transporter YP_001361839.1 PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_3266 maltose/maltodextrin-binding protein YP_001361838.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_3265 arabitol-phosphate dehydrogenase YP_001361837.1 PFAM: sugar-binding domain protein; KEGG: mkm:Mkms_2598 transcriptional regulator, DeoR family YP_001361836.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3262 L-xylulose reductase YP_001361835.1 PFAM: carbohydrate kinase FGGY; KEGG: rxy:Rxyl_0833 carbohydrate kinase, FGGY YP_001361834.1 PFAM: regulatory protein TetR; KEGG: sco:SCO0428 TetR family transcriptional regulator YP_001361833.1 KEGG: sco:SCO0503 hypothetical protein YP_001361832.1 KEGG: nfa:nfa55000 hypothetical protein YP_001361831.1 PFAM: regulatory protein TetR; KEGG: sma:SAV1468 TetR-family transcriptional regulator YP_001361830.1 PFAM: Amidase; KEGG: fal:FRAAL4260 glutamyl-tRNA(Gln) amidotransferase, subunit A YP_001361829.1 PFAM: sugar isomerase (SIS); KEGG: art:Arth_3429 transcriptional regulator, RpiR family YP_001361828.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: yps:YPTB0871 N-carbamoyl-L-amino acid amidohydrolase YP_001361827.1 PFAM: aminotransferase class V; KEGG: pat:Patl_2052 aminotransferase, class V YP_001361826.1 PFAM: amidohydrolase; KEGG: art:Arth_3693 allantoinase YP_001361825.1 PFAM: protein of unknown function DUF182; KEGG: sco:SCO6174 hypothetical protein YP_001361824.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rha:RHA1_ro04506 probable xanthine dehydrogenase molybdenum binding subunit YP_001361823.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mva:Mvan_5280 molybdopterin dehydrogenase, FAD-binding YP_001361822.1 PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO6169 regulatory protein YP_001361821.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nca:Noca_1141 guanine deaminase YP_001361820.1 PFAM: Uricase; KEGG: rha:RHA1_ro04509 urate oxidase YP_001361819.1 PFAM: transthyretin; KEGG: mul:MUL_0457 hypothetical protein YP_001361818.1 KEGG: rha:RHA1_ro04511 hypothetical protein YP_001361817.1 KEGG: rha:RHA1_ro04499 hypothetical protein YP_001361816.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro05149 permease for cytosine/purines, uracil, thiamine, allantoin YP_001361815.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mkm:Mkms_3674 CMP/dCMP deaminase, zinc-binding YP_001361814.1 PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro05150 probable transcriptional regulator YP_001361813.1 KEGG: msm:MSMEG_2045 monoxygenase YP_001361812.1 TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; KEGG: fal:FRAAL1473 adenosine deaminase 3 (adenosine aminohydrolase 3) YP_001361811.1 PFAM: amidohydrolase 2; KEGG: fal:FRAAL5959 hypothetical protein YP_001361810.1 KEGG: rha:RHA1_ro03329 hypothetical protein YP_001361809.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rha:RHA1_ro03330 probable lipoic acid synthetase YP_001361808.1 PFAM: GCN5-related N-acetyltransferase; AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rha:RHA1_ro03331 hypothetical protein YP_001361807.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rha:RHA1_ro03332 probable nitrilase YP_001361806.1 KEGG: rha:RHA1_ro03333 hypothetical protein YP_001361805.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro03334 probable monooxygenase YP_001361804.1 PFAM: glycosyl transferase group 1; KEGG: rha:RHA1_ro03336 possible glycosyl transferase YP_001361803.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rha:RHA1_ro03335 probable nitrilase YP_001361801.1 KEGG: bta:786238 hypothetical protein LOC786238 YP_001361798.1 PFAM: zinc finger SWIM domain protein; KEGG: rha:RHA1_ro01904 hypothetical protein YP_001361797.1 KEGG: sma:SAV3459 hypothetical protein YP_001361796.1 PFAM: ATPase activities AAA_5; KEGG: nfa:nfa46500 hypothetical protein YP_001361795.1 KEGG: rha:RHA1_ro01907 hypothetical protein YP_001361794.1 PFAM: VWA containing CoxE family protein; KEGG: nfa:nfa46520 hypothetical protein YP_001361793.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: aav:Aave_3935 NmrA family protein YP_001361792.1 PFAM: regulatory protein MarR; KEGG: pae:PA1603 probable transcriptional regulator YP_001361791.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ana:all4736 hypothetical protein YP_001361790.1 KEGG: mkm:Mkms_4094 conserved hypothetical protein YP_001361789.1 PFAM: regulatory protein ArsR; KEGG: bad:BAD_0218 ArsR-family transcriptional regulator YP_001361788.1 PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL3147 transmembrane transporter YP_001361786.1 PFAM: regulatory protein TetR; KEGG: fra:Francci3_2758 transcriptional regulator, TetR family YP_001361785.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rxy:Rxyl_0016 short-chain dehydrogenase/reductase SDR YP_001361784.1 KEGG: rha:RHA1_ro02774 hypothetical protein YP_001361783.1 PFAM: helix-turn-helix domain protein; KEGG: ava:Ava_4055 transcriptional regulator of molybdate metabolism, XRE family YP_001361781.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sus:Acid_0875 intracellular protease, PfpI family YP_001361780.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV437 magnesium or manganese-dependent protein phosphatase YP_001361779.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc02576 hypothetical acetyltransferase protein YP_001361778.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1441 acetyltransferase, GNAT family YP_001361776.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL3695 secreted protein (partial) YP_001361774.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO7448 hypothetical protein YP_001361773.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO7140 DNA-binding protein YP_001361772.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1303 oxidoreductase, short-chain alcohol dehydrogenase/reductase family YP_001361771.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hne:HNE_1423 sensory box-containing diguanylate cyclase YP_001361769.1 KEGG: cel:C18H7.3 COLlagen YP_001361768.1 KEGG: tcr:509105.90 RNA-binding protein RGGm Pfam: RRM_3 RRM_1 PROSITE: GLY_RICH RRM YP_001361767.1 PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: nfa:nfa53700 transcriptional regulator YP_001361766.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_3850 ABC transporter, ATP-binding protein YP_001361765.1 PFAM: ABC transporter; KEGG: aau:AAur_3851 ABC transporter, efflux permease protein YP_001361764.1 PFAM: regulatory protein MerR; KEGG: mkm:Mkms_5430 transcriptional regulator, MerR family YP_001361763.1 PFAM: dihydrodipicolinate synthetase; KEGG: rha:RHA1_ro07087 dihydrodipicolinate synthase YP_001361762.1 PFAM: small multidrug resistance protein; KEGG: mul:MUL_2881 multidrugs-transport integral membrane protein Mmr-like YP_001361761.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hal:VNG1523G Htr8 YP_001361760.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: ace:Acel_0096 diguanylate cyclase YP_001361759.1 PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001361758.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO7759 DNA-binding protein YP_001361757.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_001361756.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: xcv:XCV0667 sensor protein YP_001361755.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: art:Arth_3170 GAF sensor protein YP_001361754.1 PFAM: histone family protein DNA-binding protein; KEGG: rha:RHA1_ro06501 DNA-binding protein YP_001361753.1 PFAM: acyltransferase 3; KEGG: fra:Francci3_2337 acyltransferase 3 YP_001361750.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: fal:FRAAL2979 ABC transporter (ATP-binding protein) YP_001361749.1 KEGG: nca:Noca_0250 ABC transporter transmembrane protein YP_001361748.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: art:Arth_4135 signal transduction histidine kinase YP_001361747.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fal:FRAAL2982 hypothetical sensory transduction protein YP_001361746.1 PFAM: helix-turn-helix domain protein; KEGG: mkm:Mkms_0189 helix-turn-helix domain protein YP_001361745.1 KEGG: ret:RHE_CH02726 hydrolase protein YP_001361744.1 KEGG: cgb:cg1527 hypothetical protein YP_001361743.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO3750 two-component sensor histidine kinase YP_001361742.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sco:SCO2281 two-component system response-regulator YP_001361741.1 PFAM: PRC-barrel domain protein; KEGG: aau:AAur_3970 conserved domain protein YP_001361739.1 PFAM: regulatory protein TetR; KEGG: sco:SCO7809 TetR-family transcriptional regulator YP_001361737.1 PFAM: DNA polymerase beta domain protein region; KEGG: rha:RHA1_ro03315 hypothetical protein YP_001361736.1 PFAM: GAF domain protein; stage II sporulation E family protein; Phytochrome central region domain protein; PAS fold-2 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL5334 bacteriophytochrome (phytochrome-like protein) YP_001361735.1 PFAM: Haem oxygenase; KEGG: fal:FRAAL5335 bacteriophytochrome heme oxygenase YP_001361734.1 KEGG: fal:FRAAL3947 TfxG-like immunity protein against TfxA-like peptides YP_001361733.1 PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001361732.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; periplasmic binding protein/LacI transcriptional regulator; KEGG: pca:Pcar_2499 FOG: GGDEF domain containing protein YP_001361731.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: fal:FRAAL2982 hypothetical sensory transduction protein YP_001361730.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: lxx:Lxx08740 two-component system, sensor protein YP_001361729.1 KEGG: sco:SCO6361 integral membrane protein YP_001361728.1 KEGG: sco:SCO6361 integral membrane protein YP_001361727.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lxx:Lxx08750 ABC transporter, ATP-binding protein YP_001361726.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2902 hydrolase YP_001361725.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein YP_001361724.1 PFAM: regulatory protein ArsR; KEGG: pde:Pden_1214 regulatory protein, ArsR YP_001361720.1 KEGG: rba:RB7682 hypothetical protein YP_001361719.1 PFAM: beta-lactamase; KEGG: nfa:nfa13570 peptidase YP_001361717.1 PFAM: luciferase family protein; KEGG: bja:blr5498 oxidoreductase protein YP_001361715.1 PFAM: LGFP repeat protein; KEGG: nfa:nfa24370 hypothetical protein YP_001361714.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO4664 integral membrane protein YP_001361713.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV3634 ABC-transporter ATP-binding protein YP_001361711.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase YP_001361709.1 PFAM: hypothetical protein; KEGG: rha:RHA1_ro00967 possible transcriptional regulator YP_001361708.1 PFAM: dienelactone hydrolase; KEGG: sco:SCO2069 hypothetical protein YP_001361706.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO7706 DNA-binding protein YP_001361705.1 KEGG: dge:Dgeo_0681 hypothetical protein YP_001361704.1 KEGG: mxa:MXAN_0293 hypothetical protein YP_001361702.1 KEGG: lxx:Lxx18160 glycerol-phosphate porter YP_001361701.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mpa:MAP3518c hypothetical protein YP_001361700.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; KEGG: sma:SAV371 oxidoreductase YP_001361699.1 PFAM: helix-turn-helix domain protein; KEGG: sco:SCO7706 DNA-binding protein YP_001361697.1 PFAM: amidohydrolase; amidohydrolase; KEGG: rxy:Rxyl_0206 amidohydrolase YP_001361696.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_0524 short chain dehydrogenase YP_001361695.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sru:SRU_2781 oxidoreductase YP_001361694.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mav:MAV_2145 Na+/H+ antiporter YP_001361693.1 KEGG: btl:BALH_2404 hypothetical protein YP_001361692.1 PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro00265 possible transcriptional regulator, PadR family YP_001361691.1 PFAM: peptidase domain protein; KEGG: nfa:nfa18030 hypothetical protein YP_001361690.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: nfa:nfa32620 lipase YP_001361689.1 KEGG: fal:FRAAL0073 hypothetical protein; signal peptide YP_001361688.1 PFAM: luciferase family protein; KEGG: nca:Noca_2597 luciferase family protein YP_001361687.1 PFAM: NADPH-dependent FMN reductase; KEGG: tfu:Tfu_1931 oxidoreductase YP_001361686.1 PFAM: low temperature requirement A; KEGG: sco:SCO3192 integral membrane protein YP_001361685.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_3602 chemotaxis sensory transducer YP_001361684.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: azo:azo1490 conserved hypothetical signaling protein YP_001361683.1 PFAM: regulatory protein MarR; KEGG: rha:RHA1_ro01947 transcriptional regulator, MarR family YP_001361682.1 PFAM: luciferase family protein; KEGG: lxx:Lxx23180 luciferase-like monooxygenase YP_001361681.1 PFAM: beta-lactamase; KEGG: bld:BLi00280 PenP YP_001361680.1 PFAM: GAF domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001361679.1 KEGG: pac:PPA1294 hypothetical protein YP_001361678.1 KEGG: pac:PPA1293 hypothetical protein, ribonuclease E YP_001361676.1 PFAM: death-on-curing protein YP_001361673.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0903 acetyltransferase YP_001361672.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_2162 peptidase M20 YP_001361671.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0882 transcriptional regulator, GntR family YP_001361670.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: sme:SMb20768 hypothetical protein YP_001361669.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001361668.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase YP_001361667.1 PFAM: triosephosphate isomerase; KEGG: sco:SCO0578 triosephosphate isomerase YP_001361666.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: msm:MSMEG_6791 3-hydroxybutyryl-CoA dehydrogenase YP_001361665.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: reh:H16_B2319 transcriptional regulator, SoxR-family YP_001361664.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001361663.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_3602 chemotaxis sensory transducer YP_001361661.1 KEGG: msm:MSMEG_6597 hydrolase of the alpha/beta superfamily protein YP_001361660.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV7005 iron sulphur protein YP_001361659.1 TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rha:RHA1_ro06484 dihydroxy-acid dehydratase YP_001361658.1 PFAM: phage integrase family protein; KEGG: fra:Francci3_2304 phage integrase YP_001361657.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: art:Arth_2774 UBA/ThiF-type NAD/FAD binding protein YP_001361656.1 KEGG: tfu:Tfu_1450 hypothetical protein YP_001361655.1 PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: bpe:BP0294 5'(3')-deoxyribonucleotidase YP_001361654.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01536 multidrug resistance transporter, MFS superfamily YP_001361653.1 PFAM: protein of unknown function DUF159; KEGG: art:Arth_4324 protein of unknown function DUF159 YP_001361652.1 KEGG: tfu:Tfu_1072 hypothetical protein YP_001361651.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: aau:AAur_1125 inosine-uridine preferring nucleoside hydrolase (IunH) YP_001361650.1 PFAM: nitroreductase; KEGG: rxy:Rxyl_1083 nitroreductase YP_001361649.1 KEGG: rxy:Rxyl_1082 hypothetical protein YP_001361647.1 PFAM: integral membrane protein TerC; KEGG: fal:FRAAL4603 membrane protein TerC YP_001361646.1 KEGG: nca:Noca_4866 sugar diacid utilization regulator-like protein YP_001361645.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: ace:Acel_0587 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_001361644.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: art:Arth_0112 glycerophosphoryl diester phosphodiesterase YP_001361643.1 PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_2670 major facilitator superfamily MFS_1 YP_001361642.1 KEGG: nca:Noca_2669 hypothetical protein YP_001361641.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: sco:SCO1422 membrane protein YP_001361640.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL3769 polyprenol-phosphate-mannosyl transferase YP_001361639.1 PFAM: amidohydrolase; KEGG: sma:SAV6922 hypothetical protein YP_001361638.1 KEGG: sco:SCO2725 lipoprotein YP_001361637.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sco:SCO1622 5'-3' exonuclease YP_001361636.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: nca:Noca_2043 methyltransferase type 11 YP_001361635.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases; KEGG: sco:SCO1631 helicase YP_001361634.1 PFAM: diacylglycerol kinase catalytic region; KEGG: sma:SAV6694 hypothetical protein YP_001361633.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: aau:AAur_2185 sec-independent protein translocase TatC YP_001361632.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mkm:Mkms_2519 twin-arginine translocation protein, TatA/E family subunit YP_001361631.1 KEGG: ace:Acel_1202 hypothetical protein YP_001361630.1 KEGG: fal:FRAAL2881 hypothetical protein YP_001361629.1 KEGG: ace:Acel_1200 transcriptional regulator-like YP_001361628.1 KEGG: tfu:Tfu_1772 hypothetical protein YP_001361627.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: art:Arth_2180 peptidylprolyl isomerase, FKBP-type YP_001361626.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pac:PPA1384 peptidyl-prolyl cis-trans isomerase YP_001361625.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: nca:Noca_2648 protein of unknown function DUF245 domain protein YP_001361624.1 PFAM: 20S proteasome A and B subunits; KEGG: ace:Acel_1189 20S proteasome, A and B subunits YP_001361623.1 PFAM: 20S proteasome A and B subunits; KEGG: sma:SAV6681 20S proteasome beta-subunit YP_001361622.1 KEGG: art:Arth_2175 protein of unknown function DUF797 YP_001361621.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: tfu:Tfu_1796 proteasome component YP_001361620.1 PFAM: protein of unknown function DUF214; KEGG: ava:Ava_2862 protein of unknown function DUF214 YP_001361619.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ade:Adeh_4155 ABC transporter, ATPase subunit YP_001361618.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: ade:Adeh_3412 secretion protein HlyD YP_001361617.1 PFAM: NUDIX hydrolase; KEGG: ace:Acel_1185 NUDIX hydrolase YP_001361616.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: ace:Acel_1184 vesicle-fusing ATPase YP_001361615.1 PFAM: aminotransferase class V; KEGG: art:Arth_1432 kynureninase YP_001361614.1 PFAM: tryptophan 23-dioxygenase; KEGG: art:Arth_1431 tryptophan 2,3-dioxygenase YP_001361613.1 KEGG: rha:RHA1_ro01804 possible esterase YP_001361612.1 PFAM: ribonuclease BN; KEGG: rha:RHA1_ro03959 possible ribonuclease YP_001361611.1 KEGG: rha:RHA1_ro04366 hypothetical protein YP_001361610.1 PFAM: Rhodanese domain protein; KEGG: fal:FRAAL5355 3-mercaptopyruvate sulfurtransferase YP_001361609.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: aau:AAur_1887 oxidoreductase family, NAD-binding Rossmann fold domain protein YP_001361608.1 PFAM: protein of unknown function DUF1037; KEGG: art:Arth_3683 protein of unknown function DUF1037 YP_001361607.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: aau:AAur_2173 hypothetical protein YP_001361606.1 PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein YP_001361605.1 KEGG: sma:SAV6672 RecB family exonuclease YP_001361604.1 PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_1140 chemotaxis sensory transducer YP_001361603.1 PFAM: response regulator receiver; KEGG: rru:Rru_A2330 response regulator receiver domain protein (CheY) YP_001361602.1 KEGG: rru:Rru_A2328 hypothetical protein YP_001361601.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rru:Rru_A2327 CheA signal transduction histidine kinases (STHK) YP_001361600.1 PFAM: response regulator receiver; KEGG: rru:Rru_A2326 response regulator receiver domain protein (CheY) YP_001361599.1 PFAM: MCP methyltransferase CheR-type; KEGG: rpc:RPC_4609 MCP methyltransferase, CheR-type YP_001361598.1 KEGG: rru:Rru_A2324 PBS lyase heat-like repeat YP_001361597.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: rru:Rru_A2323 two component CheB methylesterase YP_001361596.1 PFAM: CheW domain protein; KEGG: rru:Rru_A2322 CheW protein YP_001361595.1 PFAM: chemotaxis sensory transducer; KEGG: rru:Rru_A2321 chemotaxis sensory transducer YP_001361593.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nca:Noca_2632 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001361592.1 PFAM: protein of unknown function DUF75; KEGG: sma:SAV6650 hypothetical protein YP_001361591.1 PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 possible cytochrome YP_001361590.1 PFAM: protein of unknown function DUF124; KEGG: nfa:nfa55610 hypothetical protein YP_001361589.1 PFAM: protein of unknown function DUF124; KEGG: sma:SAV2851 hypothetical protein YP_001361588.1 PFAM: protein of unknown function DUF124; KEGG: nfa:nfa55630 hypothetical protein YP_001361587.1 PFAM: peptidase M19 renal dipeptidase; KEGG: sma:SAV5023 dipeptidase YP_001361586.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001361585.1 KEGG: rha:RHA1_ro00878 hypothetical protein YP_001361584.1 KEGG: sco:SCO1665 hypothetical protein YP_001361583.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV6644 mutase YP_001361582.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sma:SAV6643 ion transport protein YP_001361581.1 KEGG: cne:CNC04670 hypothetical protein YP_001361580.1 PFAM: glycosyl transferase group 1; KEGG: msm:MSMEG_5951 glycosyl transferase, group 1 YP_001361579.1 KEGG: aau:AAur_4116 acetyltransferase-like protein YP_001361578.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: mkm:Mkms_0962 NAD-dependent epimerase/dehydratase YP_001361577.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: aau:AAur_4113 GDP-mannose 4,6-dehydratase YP_001361576.1 KEGG: rme:Rmet_5858 hypothetical protein YP_001361575.1 PFAM: fibronectin type III domain protein; SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: ace:Acel_0663 peptidase S26B, signal peptidase YP_001361574.1 TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: bur:Bcep18194_A4935 cytidyltransferase-related YP_001361573.1 TIGRFAM: cytidyltransferase-related domain; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bur:Bcep18194_A4918 cytidyltransferase-related YP_001361572.1 KEGG: sco:SCO0397 integral membrane protein YP_001361571.1 PFAM: glycosyl transferase family 2; KEGG: nca:Noca_0456 glycosyl transferase, family 2 YP_001361570.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: art:Arth_3195 lipopolysaccharide biosynthesis YP_001361569.1 PFAM: glycosyl transferase group 1; KEGG: msm:MSMEG_5964 glycosyl transferase, group 1 YP_001361568.1 TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: aau:AAur_2168 undecaprenol kinase YP_001361567.1 KEGG: aau:AAur_2147 hypothetical protein YP_001361566.1 KEGG: art:Arth_2164 hypothetical protein YP_001361565.1 PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_2013 amino acid permease-associated region YP_001361564.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro01948 possible alkanal monooxygenase YP_001361563.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa56080 ABC transporter YP_001361560.1 KEGG: ade:Adeh_4032 general secretory system II, protein E-like YP_001361559.1 KEGG: rha:RHA1_ro10086 hypothetical protein YP_001361558.1 PFAM: ATPase activities AAA_3; ATPase activities AAA_5; KEGG: sco:SCO1306 hypothetical protein YP_001361557.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nca:Noca_1614 ATP-binding region, ATPase domain protein domain protein YP_001361556.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nca:Noca_1613 response regulator receiver YP_001361555.1 PFAM: amino acid permease-associated region; KEGG: bte:BTH_I2921 GabA permease YP_001361554.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sco:SCO4026 ATP binding protein YP_001361553.1 PFAM: EAL domain protein; KEGG: ace:Acel_0529 diguanylate phosphodiesterase YP_001361552.1 PFAM: lytic transglycosylase catalytic; KEGG: ace:Acel_1157 lytic transglycosylase, catalytic YP_001361551.1 KEGG: nca:Noca_1677 hypothetical protein YP_001361550.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_1676 sigma-70 region 2 domain protein YP_001361549.1 PFAM: aminoglycoside phosphotransferase; KEGG: mul:MUL_5000 phosphotransferase YP_001361548.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sma:SAV3824 pyridoxamine 5'-phosphate oxidase YP_001361547.1 KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein YP_001361545.1 PFAM: rhodopsin; KEGG: gvi:gll0198 similar to bacterioopsin YP_001361544.1 KEGG: aau:AAur_1865 hypothetical protein YP_001361543.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_1866 alcohol dehydrogenase YP_001361542.1 PFAM: helix-turn-helix domain protein; KEGG: aau:AAur_0977 helix-turn-helix domain protein YP_001361541.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: art:Arth_0868 methionine aminopeptidase, type I YP_001361540.1 PFAM: protein of unknown function UPF0061; KEGG: mav:MAV_3983 hypothetical protein YP_001361539.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sco:SCO5745 hypothetical protein YP_001361538.1 PFAM: protein of unknown function DUF81; KEGG: aau:AAur_1554 integral membrane protein YP_001361537.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit YP_001361536.1 KEGG: chu:CHU_2226 hypothetical protein YP_001361535.1 KEGG: pfl:PFL_5207 hypothetical protein YP_001361534.1 PFAM: alkaline phosphatase; KEGG: mva:Mvan_1026 alkaline phosphatase YP_001361533.1 PFAM: cell wall binding repeat 2-containing protein; KEGG: bld:BLi03808 N-acetylmuramoyl-L-alanine amidase (major autolysin); RBL00297 YP_001361532.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mva:Mvan_3528 UDP-N-acetylmuramyl-tripeptide synthetases YP_001361528.1 PFAM: helix-turn-helix domain protein YP_001361527.1 TIGRFAM: DNA binding domain, excisionase family YP_001361519.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; KEGG: aau:AAur_0002 DNA polymerase III, beta subunit YP_001361518.1 PFAM: exonuclease RNase T and DNA polymerase III; KEGG: fal:FRAAL2687 hypothetical protein YP_001361516.1 PFAM: transcription factor WhiB; KEGG: blo:BL1008 WhiB-type transcription regulator YP_001361512.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sfu:Sfum_2606 ParB-like partition proteins YP_001361510.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: nca:Noca_0767 RNA polymerase sigma factor, FliA/WhiG family YP_001361509.1 KEGG: bur:Bcep18194_A5240 hypothetical protein YP_001361508.1 KEGG: nfa:nfa210 hypothetical protein YP_001361477.1 KEGG: mva:Mvan_4358 hypothetical protein YP_001361474.1 KEGG: nfa:nfa15210 hypothetical protein YP_001361473.1 PFAM: phage Terminase; KEGG: nfa:nfa15220 hypothetical protein YP_001361472.1 KEGG: lxx:Lxx03920 phage-related portal protein YP_001361469.1 KEGG: nfa:nfa39240 hypothetical protein YP_001361464.1 KEGG: nfa:nfa39180 hypothetical protein YP_001361460.1 PFAM: transglycosylase; KEGG: lma:LmjF34.0690 hypothetical protein, conserved YP_001361456.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cef:CE2387 bacterioferritin comigratory protein YP_001361455.1 KEGG: rso:RS05070 hemagglutinin/hemolysin-related protein YP_001361453.1 PFAM: fibronectin type III domain protein; KEGG: aav:Aave_2372 hypothetical protein YP_001361449.1 KEGG: nwi:Nwi_1540 hypothetical protein YP_001361447.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bch:Bcen2424_4479 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001361446.1 PFAM: hypothetical protein; KEGG: sfu:Sfum_0755 TolB, N-terminal domain protein YP_001361442.1 KEGG: tfu:Tfu_0260 hypothetical protein YP_001361441.1 PFAM: phage integrase family protein; KEGG: fal:FRAAL1760 integrase YP_001361435.1 PFAM: ATPase activities AAA_3; ATPase activities AAA_5; KEGG: ace:Acel_0659 ATPase activities, AAA_3 YP_001361434.1 PFAM: protein of unknown function DUF58; KEGG: ace:Acel_0660 protein of unknown function DUF58 YP_001361433.1 PFAM: transglutaminase domain protein; KEGG: ace:Acel_0661 transglutaminase domain protein YP_001361432.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001361431.1 PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase and ligase; KEGG: aau:AAur_1999 hydrolase/AMP-binding domain protein YP_001361430.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aau:AAur_2000 dehydrogenase YP_001361429.1 KEGG: lxx:Lxx12230 hypothetical protein YP_001361428.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor YP_001361427.1 PFAM: carbon storage regulator; KEGG: nca:Noca_0772 carbon storage regulator YP_001361425.1 PFAM: type IV pilus assembly PilZ; KEGG: ace:Acel_0863 type IV pilus assembly PilZ YP_001361424.1 KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein YP_001361423.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: ace:Acel_0861 flagellar biosynthesis protein FlhA YP_001361422.1 PFAM: response regulator receiver; KEGG: sth:STH2399 two-component response regulator YP_001361421.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: mag:amb3387 sensor protein FixL YP_001361420.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_0116 multi-sensor signal transduction histidine kinase YP_001361419.1 PFAM: type III secretion exporter; KEGG: nca:Noca_0740 type III secretion exporter YP_001361418.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: ace:Acel_0859 type III secretion system inner membrane R protein YP_001361417.1 PFAM: export protein FliQ family 3; KEGG: ace:Acel_0858 flagellar biosynthetic protein FliQ YP_001361416.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001361415.1 KEGG: bur:Bcep18194_A3222 flagellar biosynthesis protein, FliO YP_001361414.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: nca:Noca_0745 flagellar motor switch protein FliN YP_001361413.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: nca:Noca_0746 flagellar motor switch protein FliM YP_001361412.1 KEGG: nca:Noca_0747 flagellar basal body-associated protein FliL YP_001361411.1 PFAM: OmpA/MotB domain protein; KEGG: ace:Acel_0852 OmpA/MotB domain protein YP_001361410.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ace:Acel_0851 MotA/TolQ/ExbB proton channel YP_001361409.1 PFAM: flagellar FlbD family protein; KEGG: ace:Acel_0850 flagellar FlbD family protein YP_001361408.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0849 protein of unknown function DUF1078 domain protein YP_001361407.1 PFAM: flagellar hook capping protein; KEGG: nca:Noca_0752 flagellar hook capping protein YP_001361406.1 PFAM: flagellar hook-length control protein; KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001361405.1 PFAM: NLP/P60 protein; lytic transglycosylase catalytic; KEGG: nca:Noca_0754 lytic transglycosylase, catalytic YP_001361403.1 KEGG: ace:Acel_0844 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase YP_001361402.1 KEGG: ace:Acel_0843 flagellar biosynthesis/type III secretory pathway protein-like YP_001361401.1 PFAM: flagellar motor switch protein FliG; KEGG: nca:Noca_0758 flagellar motor switch protein FliG YP_001361400.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: ace:Acel_0841 flagellar M-ring protein FliF YP_001361399.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: ace:Acel_0840 flagellar hook-basal body complex subunit FliE YP_001361398.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0839 protein of unknown function DUF1078 domain protein YP_001361397.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ace:Acel_0838 flagellar basal-body rod protein YP_001361396.1 KEGG: sco:SCO5397 large Ala/Glu-rich protein YP_001361394.1 PFAM: peptidase M48 Ste24p; KEGG: mkm:Mkms_2855 peptidase M48, Ste24p YP_001361393.1 PFAM: Penicillinase repressor; KEGG: rha:RHA1_ro07249 possible transcriptional regulator YP_001361392.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sco:SCO3945 cytochrome oxidase subunit I YP_001361391.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: tfu:Tfu_0637 cytochrome bd ubiquinol oxidase, subunit II YP_001361390.1 TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC; PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO3947 ABC transporter YP_001361389.1 KEGG: ter:Tery_3474 hypothetical protein YP_001361388.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_3197 ethanolamine permease YP_001361387.1 PFAM: glutamine synthetase catalytic region; KEGG: sco:SCO1613 glutamine synthetase YP_001361386.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: msm:MSMEG_2596 peptidase C26 YP_001361385.1 PFAM: aldehyde dehydrogenase; KEGG: ace:Acel_1850 betaine-aldehyde dehydrogenase YP_001361384.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV6727 short chain dehydrogenase YP_001361383.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2599 GntR-family protein transcriptional regulator YP_001361382.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO3679 hypothetical protein YP_001361381.1 PFAM: protein of unknown function DUF820; KEGG: nca:Noca_1197 protein of unknown function DUF820 YP_001361378.1 PFAM: flagellar protein FliS; KEGG: ace:Acel_0836 flagellar protein FliS YP_001361377.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: nca:Noca_0765 flagellar hook-associated 2 domain protein YP_001361376.1 PFAM: flagellin domain protein; KEGG: noc:Noc_2367 flagellin YP_001361375.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_2032 RNA polymerase, sigma 28 subunit YP_001361373.1 KEGG: ace:Acel_0833 hypothetical protein YP_001361372.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0832 flagellar hook-associated protein FlgK YP_001361371.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: ace:Acel_0831 flagellar hook-associated protein 3 YP_001361370.1 PFAM: protein of unknown function DUF180; KEGG: nca:Noca_0771 protein of unknown function DUF180 YP_001361369.1 PFAM: protein of unknown function DUF180; KEGG: nca:Noca_0771 protein of unknown function DUF180 YP_001361368.1 PFAM: PEBP family protein; KEGG: nca:Noca_2599 PEBP family protein YP_001361367.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nca:Noca_3610 YbaK/prolyl-tRNA synthetase associated region YP_001361366.1 KEGG: art:Arth_3391 hypothetical protein YP_001361365.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: aau:AAur_2482 glycerol-3-phosphate dehydrogenase YP_001361364.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: art:Arth_2126 tRNA/rRNA methyltransferase (SpoU) YP_001361363.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ace:Acel_1751 methyl-accepting chemotaxis sensory transducer YP_001361362.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001361361.1 PFAM: NHL repeat containing protein; fibronectin type III domain protein; KEGG: hwa:HQ1193A probable cell surface glycoprotein YP_001361360.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ace:Acel_0620 diguanylate cyclase YP_001361359.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3; KEGG: mkm:Mkms_5304 selenocysteine-specific translation elongation factor YP_001361358.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001361357.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: msm:MSMEG_1852 selenide, water dikinase YP_001361356.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001361355.1 PFAM: formate/nitrite transporter; KEGG: bsu:BG12296 formate-nitrite transporter YP_001361354.1 PFAM: polysulphide reductase NrfD; KEGG: msm:MSMEG_1846 polysulphide reductase, NrfD YP_001361353.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpa:MAP0369 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit) YP_001361352.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mmc:Mmcs_5220 formate dehydrogenase YP_001361351.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: mkm:Mkms_5307 molybdopterin oxidoreductase Fe4s4 region YP_001361350.1 PFAM: aldo/keto reductase; KEGG: mkm:Mkms_1378 2,5-didehydrogluconate reductase YP_001361348.1 PFAM: protein of unknown function DUF322; KEGG: aau:AAur_3931 stress-like protein (gls24) YP_001361346.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aau:AAur_3937 RNA polymerase sigma (70) factor YP_001361345.1 PFAM: protein of unknown function DUF322; KEGG: mkm:Mkms_2280 protein of unknown function DUF322 YP_001361343.1 PFAM: amine oxidase; KEGG: ppu:PP_4155 hypothetical protein YP_001361342.1 KEGG: art:Arth_1663 secreted protein YP_001361341.1 KEGG: sma:SAV1073 hypothetical protein YP_001361340.1 KEGG: aau:AAur_1803 hypothetical protein YP_001361339.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: sco:SCO6061 oxidoreductase YP_001361337.1 PFAM: chlorite dismutase; KEGG: sco:SCO6042 hypothetical protein YP_001361336.1 TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sco:SCO6041 protoporphyrinogen oxidase YP_001361335.1 TIGRFAM: uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); KEGG: aau:AAur_2755 uroporphyrinogen decarboxylase YP_001361334.1 KEGG: nca:Noca_3675 hypothetical protein YP_001361333.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ace:Acel_1390 two component transcriptional regulator, LuxR family YP_001361332.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sma:SAV2231 ribonuclease D YP_001361331.1 KEGG: sco:SCO4120 hypothetical protein YP_001361330.1 KEGG: ace:Acel_1392 hypothetical protein YP_001361329.1 PFAM: Rhodanese domain protein; KEGG: sma:SAV2490 hypothetical protein YP_001361328.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; Transketolase domain protein; KEGG: sma:SAV2244 1-deoxy-D-xylulose 5-phosphate synthase YP_001361327.1 KEGG: tfu:Tfu_2899 hypothetical protein YP_001361325.1 KEGG: mth:MTH369 UDP-N-acetylglucosamine pyrophosphorylase related protein YP_001361324.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sco:SCO2590 glycosyltransferase YP_001361322.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sma:SAV7045 reductase YP_001361321.1 PFAM: regulatory protein TetR; KEGG: nca:Noca_3360 regulatory protein, TetR YP_001361320.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV3761 hypothetical protein YP_001361319.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dvu:DVU0903 HD domain protein YP_001361318.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: nca:Noca_1138 diguanylate cyclase YP_001361317.1 KEGG: rha:RHA1_ro00154 hypothetical protein YP_001361316.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: art:Arth_1644 aconitate hydratase 1 YP_001361314.1 PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: sma:SAV2389 RNA methyltransferase YP_001361313.1 KEGG: art:Arth_1642 transporter YP_001361312.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: aau:AAur_1786 trk-type K+ transport system, NAD-binding component YP_001361311.1 PFAM: Semialdehyde dehydrogenase NAD - binding; TrkA-N domain protein; TrkA-C domain protein; KEGG: ace:Acel_1399 TrkA-N domain protein YP_001361310.1 KEGG: tfu:Tfu_1932 hypothetical protein YP_001361309.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ace:Acel_1400 nucleic acid binding, OB-fold, tRNA/helicase-type YP_001361308.1 KEGG: art:Arth_1637 hypothetical protein YP_001361307.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: nca:Noca_2908 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_001361306.1 KEGG: lxx:Lxx10400 membrane protein YP_001361305.1 KEGG: sma:SAV2403 hypothetical protein YP_001361303.1 PFAM: inositol monophosphatase; KEGG: fra:Francci3_1313 inositol-1(or 4)-monophosphatase YP_001361302.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001361301.1 KEGG: sco:SCO5855 DNA-binding protein YP_001361300.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_1777 type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein YP_001361299.1 KEGG: sco:SCO5843 hypothetical protein YP_001361298.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: art:Arth_1628 GCN5-related N-acetyltransferase YP_001361297.1 PFAM: nitroreductase; KEGG: nca:Noca_4388 nitroreductase YP_001361296.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001361295.1 KEGG: fal:FRAAL0072 hypothetical protein YP_001361294.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cef:CE0106 hypothetical protein YP_001361293.1 PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase YP_001361292.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ace:Acel_2036 hypothetical protein YP_001361291.1 PFAM: carboxylesterase type B; KEGG: sco:SCO0321 carboxylesterase YP_001361290.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pac:PPA0351 phosphoenolpyruvate-protein kinase YP_001361289.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: aau:AAur_0293 phosphocarrier protein HPr YP_001361288.1 PFAM: PfkB domain protein; KEGG: tfu:Tfu_0696 6-phosphofructokinase : 1-phosphofructokinase YP_001361287.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: sma:SAV3690 DeoR-family transcriptional regulator YP_001361286.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001361285.1 KEGG: tfu:Tfu_2135 hypothetical protein YP_001361284.1 KEGG: nfa:nfa53640 hypothetical protein YP_001361283.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_001361282.1 PFAM: UspA domain protein; KEGG: nca:Noca_2967 UspA domain protein YP_001361281.1 PFAM: protein of unknown function DUF1232; KEGG: tfu:Tfu_2752 hypothetical protein YP_001361280.1 KEGG: mva:Mvan_6024 conserved hypothetical protein YP_001361278.1 KEGG: sco:SCO2803 hypothetical protein YP_001361277.1 PFAM: hypothetical protein; KEGG: art:Arth_0079 membrane protein YP_001361276.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mva:Mvan_3089 6-phosphogluconate dehydrogenase, decarboxylating YP_001361275.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1615 major facilitator superfamily MFS_1 YP_001361274.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sco:SCO3810 GntR-family transcriptional regulator YP_001361273.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: ace:Acel_0118 phage SPO1 DNA polymerase-related protein YP_001361272.1 PFAM: PfkB domain protein; KEGG: tfu:Tfu_2767 carbohydrate kinase YP_001361271.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3453 aryl-alcohol dehydrogenase (NADP(+)) YP_001361269.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_1073 ribonuclease BN YP_001361268.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO2763 ABC transporter protein, ATP-binding component YP_001361267.1 PFAM: luciferase family protein; KEGG: rxy:Rxyl_3089 luciferase-like protein YP_001361266.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sco:SCO0747 hypothetical protein YP_001361265.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001361264.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mva:Mvan_4986 NAD-dependent epimerase/dehydratase YP_001361263.1 KEGG: oih:OB2328 hypothetical protein YP_001361262.1 KEGG: lxx:Lxx07550 hypothetical protein YP_001361261.1 PFAM: protein of unknown function DUF75; KEGG: fal:FRAAL1976 hypothetical protein YP_001361260.1 PFAM: ATP-cone domain protein; KEGG: aau:AAur_1725 transcriptional regulator, NrdR family YP_001361259.1 KEGG: art:Arth_1469 peptidoglycan-binding LysM YP_001361258.1 TIGRFAM: LexA repressor; PFAM: peptidase S24 S26A and S26B; LexA DNA-binding domain protein; KEGG: nca:Noca_3817 LexA repressor YP_001361257.1 KEGG: sco:SCO0976 hypothetical protein YP_001361256.1 SMART: helicase c2; DEAD-like helicases; KEGG: art:Arth_1467 helicase C2 YP_001361255.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: aau:AAur_1600 GTP-binding protein YP_001361254.1 PFAM: methyltransferase small; KEGG: art:Arth_1465 methyltransferase small YP_001361253.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001361252.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; KEGG: tfu:Tfu_0815 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001361251.1 KEGG: sco:SCO5787 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001361250.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO5777 glutamate uptake system ATP-binding protein YP_001361249.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV1962 glutamate periplasmic binding protein YP_001361248.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: fra:Francci3_3521 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001361247.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro06767 glutamate transport system permease protein GluD YP_001361246.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: msm:MSMEG_6890 antibiotic biosynthesis monooxygenase domain protein YP_001361245.1 PFAM: regulatory protein RecX; KEGG: nca:Noca_2342 regulatory protein RecX YP_001361244.1 KEGG: msm:MSMEG_2723 protein RecA; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001361243.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: aau:AAur_0566 gluconolactonase YP_001361242.1 PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein YP_001361241.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: AAA ATPase; DEAD-like helicases; KEGG: nca:Noca_2329 DEAD/H associated domain protein YP_001361240.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: sma:SAV2501 endonuclease VIII YP_001361239.1 PFAM: helix-turn-helix domain protein; KEGG: aau:AAur_1591 helix-turn-helix domain protein YP_001361238.1 PFAM: CinA domain protein; KEGG: nfa:nfa38570 competence-damage inducible protein YP_001361237.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aau:AAur_1589 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001361236.1 KEGG: sma:SAV2508 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001361235.1 KEGG: mkm:Mkms_0181 conserved hypothetical protein YP_001361234.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: art:Arth_1454 cell divisionFtsK/SpoIIIE YP_001361233.1 KEGG: fra:Francci3_3869 hypothetical protein YP_001361232.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: lxx:Lxx16090 hypothetical protein YP_001361231.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001361230.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1560 phosphatase YP_001361229.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: sma:SAV1776 4-hydroxyphenylpyruvate dioxygenase YP_001361228.1 PFAM: alcohol dehydrogenase GroES domain protein; KEGG: mpa:MAP3518c hypothetical protein YP_001361227.1 PFAM: protein of unknown function DUF1469; KEGG: sma:SAV6345 integral membrane protein YP_001361226.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_1867 glutathione-independent formaldehyde dehydrogenase YP_001361225.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mav:MAV_4350 beta-phosphoglucomutase hydrolase YP_001361224.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: mva:Mvan_5750 kojibiose phosphorylase YP_001361223.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sme:SMa0168 methyltransferase-like protein YP_001361222.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa44610 hypothetical protein YP_001361221.1 KEGG: mul:MUL_2165 conserved hypothetical secreted protein YP_001361220.1 PFAM: dihydrodipicolinate reductase; KEGG: fra:Francci3_3553 dihydrodipicolinate reductase YP_001361219.1 PFAM: peptidase M16 domain protein; KEGG: aau:AAur_1571 Zn-dependent peptidases, family M16 YP_001361218.1 KEGG: aau:AAur_1570 guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein YP_001361217.1 PFAM: ribosomal protein S15; KEGG: ace:Acel_1509 ribosomal protein S15 YP_001361216.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: art:Arth_1430 riboflavin biosynthesis protein RibF YP_001361215.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001361214.1 KEGG: nca:Noca_1773 hypothetical protein YP_001361213.1 PFAM: sugar-binding domain protein; KEGG: msm:MSMEG_3606 transcriptional regulator YP_001361212.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3607 short chain dehydrogenase YP_001361211.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: msm:MSMEG_3602 ribose transport ATP-binding protein RbsA YP_001361210.1 PFAM: inner-membrane translocator; KEGG: msm:MSMEG_3601 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components YP_001361209.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mkm:Mkms_2824 periplasmic binding protein/LacI transcriptional regulator YP_001361208.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_2835 short-chain dehydrogenase/reductase SDR YP_001361207.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_3605 sorbitol dehydrogenase YP_001361206.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3604 sorbitol utilization protein SOU2 YP_001361205.1 PFAM: protein of unknown function DUF477; KEGG: msm:MSMEG_4484 conserved transmembrane protein YP_001361204.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001361203.1 PFAM: PspA/IM30 family protein; KEGG: aau:AAur_2727 PspA/IM30 family protein YP_001361202.1 PFAM: acyltransferase 3; KEGG: lme:LEUM_1149 predicted acyltransferase YP_001361201.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase II; KEGG: art:Arth_1424 tRNA pseudouridine synthase B YP_001361200.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06635 transcriptional regulator, TetR family YP_001361199.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06636 multidrug resistance transporter, MFS superfamily YP_001361197.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001361196.1 PFAM: protein of unknown function DUF503; KEGG: fal:FRAAL5759 hypothetical protein YP_001361195.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; KEGG: art:Arth_1416 translation initiation factor IF-2 YP_001361194.1 PFAM: protein of unknown function DUF448; KEGG: ace:Acel_1516 protein of unknown function DUF448 YP_001361193.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; SMART: RNA binding S1 domain protein; KEGG: sco:SCO5704 transcriptional termination/antitermination factor YP_001361192.1 PFAM: protein of unknown function DUF150; KEGG: tfu:Tfu_0775 hypothetical protein YP_001361191.1 KEGG: sco:SCO5701 hypothetical protein YP_001361190.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_1916 hypothetical protein YP_001361189.1 KEGG: aau:AAur_0314 integral membrane protein YP_001361188.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001361187.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: art:Arth_1106 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001361186.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: rha:RHA1_ro03528 possible transcriptional regulator YP_001361185.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rha:RHA1_ro03527 probable guanidinobutyrase YP_001361184.1 PFAM: amine oxidase; KEGG: art:Arth_1110 amine oxidase YP_001361183.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa21830 transporter YP_001361182.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 acetyltransferase YP_001361181.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001361180.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: lxx:Lxx12190 zinc metalloprotease YP_001361179.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001361178.1 KEGG: art:Arth_1091 hypothetical protein YP_001361177.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_1331 succinate-semialdehyde dehydrogenase YP_001361176.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: msm:MSMEG_0581 4-aminobutyrate transaminase YP_001361175.1 PFAM: purine catabolism PurC domain protein; KEGG: tfu:Tfu_0691 helix-turn-helix, fis-type YP_001361174.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mva:Mvan_3436 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001361173.1 KEGG: aau:AAur_1508 hypothetical protein YP_001361172.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001361171.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sco:SCO5628 integral membrane protein YP_001361170.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001361169.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: nca:Noca_3241 uridylate kinase YP_001361168.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: aau:AAur_1504 translation elongation factor Ts YP_001361167.1 PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2 YP_001361166.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sma:SAV4517 aminotransferase YP_001361165.1 KEGG: fal:FRAAL6492 hypothetical protein YP_001361164.1 PFAM: peptidase M23B; KEGG: aau:AAur_1502 M23 peptidase domain protein YP_001361163.1 involved in the initiation of sporulation and glycogen biosynthesis YP_001361162.1 PFAM: protein of unknown function UPF0027; KEGG: art:Arth_3119 protein of unknown function UPF0027 YP_001361161.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: art:Arth_2472 DNA protecting protein DprA YP_001361160.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: art:Arth_2473 Mg chelatase, subunit ChlI YP_001361159.1 PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease YP_001361158.1 KEGG: aau:AAur_2444 hypothetical protein YP_001361157.1 PFAM: ribonuclease HII/HIII; KEGG: art:Arth_2476 ribonuclease H YP_001361156.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: art:Arth_2477 signal peptidase I YP_001361155.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: sco:SCO5596 signal peptidase I YP_001361154.1 PFAM: ribosomal protein L19; KEGG: ace:Acel_1557 ribosomal protein L19 YP_001361153.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: tfu:Tfu_0665 tRNA (guanine-N1-)-methyltransferase YP_001361152.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: nca:Noca_3257 16S rRNA processing protein RimM YP_001361151.1 KEGG: art:Arth_2482 hypothetical protein YP_001361150.1 PFAM: ribosomal protein S16; KEGG: aau:AAur_2452 ribosomal protein S16 YP_001361149.1 PFAM: amidohydrolase; KEGG: sma:SAV6403 hypothetical protein YP_001361148.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: art:Arth_2489 signal recognition particle protein YP_001361147.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; also involved in adenylylating and deadelnylyating GlnK YP_001361146.1 PFAM: nitrogen regulatory protein P-II; KEGG: ace:Acel_1565 nitrogen regulatory protein P-II YP_001361145.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rha:RHA1_ro06530 ammonium transporter YP_001361144.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: art:Arth_2494 signal recognition particle-docking protein FtsY YP_001361142.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: nca:Noca_3273 chromosome segregation protein SMC YP_001361141.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06572 multidrug resistance transporter, MFS superfamily YP_001361140.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: art:Arth_2914 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_001361139.1 TIGRFAM: L-rhamnose isomerase; PFAM: xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro04090 probable xylose isomerase YP_001361138.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_0590 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_001361137.1 PFAM: carbohydrate kinase FGGY; KEGG: sco:SCO0814 rhamnose kinase YP_001361136.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: cgb:cg3227 L-lactate dehydrogenase YP_001361135.1 KEGG: aau:AAur_0750 hypothetical protein YP_001361134.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: nca:Noca_3928 xanthine/uracil/vitamin C permease YP_001361133.1 PFAM: ROK family protein; KEGG: art:Arth_2379 ROK family protein YP_001361132.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV2818 extracellular solute-binding protein YP_001361131.1 PFAM: ABC transporter inner membrane protein; KEGG: sma:SAV2819 integral membrane transport protein YP_001361130.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO5428 integral membrane transport protein YP_001361129.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001361128.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sco:SCO5572 ribonuclease III YP_001361127.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001361126.1 PFAM: protein of unknown function DUF177; KEGG: nca:Noca_3282 protein of unknown function DUF177 YP_001361125.1 KEGG: ace:Acel_1577 hypothetical protein YP_001361124.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: blo:BL0291 phosphopantetheine adenylyltransferase YP_001361123.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: tfu:Tfu_0647 conserved hypothetical protein 95 YP_001361122.1 KEGG: aau:AAur_4159 integral membrane protein YP_001361121.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_4158 ABC transporter, ATP-binding protein YP_001361120.1 PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tfu:Tfu_0646 ATP-dependent DNA helicase RecG YP_001361119.1 required for 70S ribosome assembly YP_001361118.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: tfu:Tfu_0643 thiamine monophosphate kinase YP_001361117.1 KEGG: art:Arth_2513 secreted protein YP_001361116.1 KEGG: rha:RHA1_ro05945 hypothetical protein YP_001361115.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; KEGG: art:Arth_2514 D-alanine--D-alanine ligase YP_001361114.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: aau:AAur_0889 cystathionine gamma-synthase YP_001361113.1 PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sco:SCO5998 UDP-N-acetylglucosamine transferase YP_001361112.1 PFAM: histone family protein DNA-binding protein; KEGG: mkm:Mkms_1969 histone family protein DNA-binding protein YP_001361111.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: art:Arth_2518 3-isopropylmalate dehydratase, small subunit YP_001361110.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: aau:AAur_2486 3-isopropylmalate dehydratase, large subunit YP_001361109.1 PFAM: regulatory protein IclR; IclR family transcriptional regulator; KEGG: sma:SAV2687 IclR-family transcriptional regulator YP_001361108.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001361106.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_001361105.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: nca:Noca_3367 branched-chain amino acid aminotransferase YP_001361104.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: nca:Noca_3368 3-isopropylmalate dehydrogenase YP_001361103.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sma:SAV4680 two-component system sensor kinase YP_001361102.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aau:AAur_2500 two-component system response regulator YP_001361101.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_2501 ABC transporter, ATP-binding protein YP_001361100.1 PFAM: protein of unknown function DUF214; KEGG: aau:AAur_2502 ABC transporter permease protein YP_001361099.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mbb:BCG_3657 hypothetical protein TB11.2 YP_001361098.1 KEGG: aau:AAur_3495 hypothetical protein YP_001361097.1 KEGG: art:Arth_3857 dibenzothiophene desulfurization enzyme A YP_001361096.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mbo:Mb3372 O-acetylhomoserine sulfhydrylase YP_001361095.1 KEGG: ani:AN3480.2 hypothetical protein YP_001361094.1 KEGG: rha:RHA1_ro06458 hypothetical protein YP_001361093.1 PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: nca:Noca_0636 flavodoxin/nitric oxide synthase YP_001361092.1 PFAM: sucraseferredoxin; KEGG: nca:Noca_4380 sucraseferredoxin family protein YP_001361091.1 PFAM: cupin; SMART: transcription factor jumonji jmjC domain protein; KEGG: mkm:Mkms_5339 cupin 4 family protein YP_001361090.1 KEGG: tfu:Tfu_0363 hypothetical protein YP_001361089.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001361088.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: fal:FRAAL5850 acetolactate synthase III, valine-sensitive, small subunit YP_001361087.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_001361086.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001361085.1 PFAM: oxidoreductase domain protein; aldo/keto reductase; oxidoreductase; KEGG: atc:AGR_L_3327 hypothetical protein YP_001361084.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3918 transcriptional regulator, LacI family YP_001361083.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: mpa:MAP2104 FdhF YP_001361082.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1268 major facilitator superfamily MFS_1 YP_001361081.1 KEGG: mva:Mvan_3493 conserved hypothetical protein YP_001361080.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: aau:AAur_3265 nitrite reductase [NAD(P)H], large subunit YP_001361079.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: art:Arth_3274 Rieske (2Fe-2S) domain protein YP_001361078.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_3111 uroporphyrin-III C-methyltransferase YP_001361077.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_001361076.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: art:Arth_3126 cobalamin (vitamin B12) biosynthesis CbiX protein YP_001361075.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: art:Arth_3671 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001361074.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sco:SCO5508 oxidoreductase YP_001361073.1 KEGG: aau:AAur_0063 integral membrane protein YP_001361072.1 KEGG: ani:AN2833.2 hypothetical protein YP_001361071.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001361070.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: nca:Noca_3436 glutamyl-tRNA(Gln) amidotransferase, A subunit YP_001361069.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: tfu:Tfu_0605 glutamyl-tRNA(Gln) amidotransferase C subunit YP_001361068.1 PFAM: amidinotransferase; KEGG: fal:FRAAL4324 hypothetical protein YP_001361067.1 KEGG: msm:MSMEG_2362 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_001361066.1 KEGG: gvi:gll2146 hypothetical protein YP_001361065.1 PFAM: protein of unknown function DUF523; KEGG: sth:STH1078 hypothetical protein YP_001361064.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1468 GCN5-related N-acetyltransferase YP_001361063.1 KEGG: art:Arth_2719 hypothetical protein YP_001361062.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sco:SCO1230 secreted tripeptidylaminopeptidase YP_001361061.1 PFAM: protein of unknown function DUF445; KEGG: nca:Noca_1692 protein of unknown function DUF445 YP_001361060.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001361059.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_2729 aminotransferase, class V YP_001361058.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sma:SAV2789 glycosyl hydrolase YP_001361057.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_0030 ABC transporter inner membrane protein YP_001361056.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_0029 ABC transporter inner membrane protein YP_001361055.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_0028 ABC transporter YP_001361054.1 PFAM: NMT1/THI5 like domain protein; KEGG: art:Arth_0027 twin-arginine translocation pathway signal YP_001361053.1 KEGG: msm:MSMEG_2045 monoxygenase YP_001361052.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_5057 transcriptional regulator, TetR family YP_001361051.1 catalyzes the formation of inosine from adenosine YP_001361050.1 TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; KEGG: nca:Noca_1811 alpha-glucan phosphorylases YP_001361049.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_0737 alpha amylase, catalytic region YP_001361048.1 TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aau:AAur_0909 trehalose synthase YP_001361047.1 KEGG: art:Arth_0739 1,4-alpha-glucan branching enzyme YP_001361046.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: ace:Acel_0676 1,4-alpha-glucan branching enzyme YP_001361045.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rha:RHA1_ro02592 ABC amino acid transporter, substrate binding component YP_001361044.1 PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro02591 ABC amino acid transporter, permease component YP_001361043.1 PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro02590 ABC quaternary amine transporter, permease component YP_001361042.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rha:RHA1_ro02589 ABC quaternary amine transporter, ATP-binding component YP_001361041.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sma:SAV3504 histidine ammonia-lyase YP_001361040.1 PFAM: cysteine dioxygenase type I; KEGG: nfa:nfa4090 hypothetical protein YP_001361039.1 PFAM: amidohydrolase 2 YP_001361038.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bch:Bcen2424_3452 transcriptional regulator, LacI family YP_001361037.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: dra:DRA0147 histidine ammonia-lyase YP_001361036.1 PFAM: beta-lactamase; KEGG: pac:PPA1511 6-aminohexanoate-dimer hydrolase YP_001361035.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa24920 ABC transporter ATP-binding protein YP_001361034.1 PFAM: thioredoxin; KEGG: art:Arth_2594 thioredoxin domain YP_001361033.1 KEGG: ade:Adeh_0244 LigA YP_001361032.1 PFAM: protein of unknown function DUF77; KEGG: pac:PPA0164 hypothetical protein YP_001361031.1 KEGG: tfu:Tfu_2396 cellulose-binding protein YP_001361030.1 KEGG: lxx:Lxx12520 hypothetical protein YP_001361029.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ace:Acel_0686 threonine aldolase YP_001361028.1 KEGG: tfu:Tfu_2398 ATP/GTP-binding protein, doubtful CDS YP_001361027.1 PFAM: protein of unknown function DUF91; KEGG: art:Arth_2599 protein of unknown function DUF91 YP_001361026.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sma:SAV2869 anti-sigma factor antagonist YP_001361024.1 KEGG: sma:SAV2879 hypothetical protein YP_001361023.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: art:Arth_2604 H+-transporting two-sector ATPase, delta/epsilon subunit YP_001361022.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001361021.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001361020.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001361019.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: sma:SAV2884 ATP synthase delta chain YP_001361018.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: art:Arth_2609 ATP synthase F0, B subunit YP_001361017.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: nca:Noca_1758 H+-transporting two-sector ATPase, C subunit YP_001361016.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: nca:Noca_1757 ATP synthase F0, A subunit YP_001361014.1 KEGG: fra:Francci3_3715 ATP synthase protein I YP_001361013.1 PFAM: glycosyl transferase family 4; KEGG: ace:Acel_0644 glycosyl transferase, family 4 YP_001361012.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: ace:Acel_0643 SUA5/YciO/YrdC/YwlC family protein YP_001361011.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: lxx:Lxx06940 methyltransferase YP_001361010.1 PFAM: beta-lactamase; KEGG: rha:RHA1_ro05611 possible beta-lactamase YP_001361009.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: ace:Acel_0641 peptide chain release factor 1 YP_001361008.1 PFAM: ribosomal protein L31; KEGG: pac:PPA1253 50S ribosomal protein L31 YP_001361007.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001361006.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: tfu:Tfu_2422 homoserine kinase YP_001361005.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001361004.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: sma:SAV2918 homoserine dehydrogenase YP_001361003.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sco:SCO5353 diaminopimelate decarboxylase YP_001361002.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001361001.1 KEGG: rpd:RPD_0314 protein of unknown function DUF1345 YP_001361000.1 SMART: protein of unknown function SprT; KEGG: nca:Noca_3805 protein of unknown function SprT YP_001360999.1 PFAM: glutathione peroxidase; KEGG: sco:SCO4444 glutathione peroxidase YP_001360998.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO1142 oxidoreductase YP_001360997.1 PFAM: phosphoribosyltransferase; KEGG: nca:Noca_2343 phosphoribosyltransferase YP_001360996.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; KEGG: fal:FRAAL4016 HrpA-like helicase, ATP-dependent YP_001360994.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lxx:Lxx20780 ATP-dependent RNA helicase YP_001360993.1 PFAM: transport system permease protein; KEGG: sma:SAV6491 ferrichrome transport system permease protein YP_001360992.1 PFAM: transport system permease protein; KEGG: sma:SAV6492 ferrichrome transport system permease protein YP_001360991.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_0336 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components YP_001360990.1 PFAM: ATP-NAD/AcoX kinase; KEGG: fal:FRAAL3438 inorganic polyphosphate/ATP-NAD kinase (poly(P)/ATP NAD kinase) YP_001360989.1 KEGG: sma:SAV2410 hypothetical protein YP_001360988.1 KEGG: sma:SAV4165 hypothetical protein YP_001360987.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: aau:AAur_2633 membrane protein containing CBS domain YP_001360986.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: art:Arth_2643 protein of unknown function DUF21 YP_001360984.1 KEGG: art:Arth_0162 alpha/beta hydrolase fold YP_001360983.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001360982.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV2970 two-component system response regulator YP_001360981.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rha:RHA1_ro05053 sensor kinase, two-component system YP_001360980.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_001360979.1 PFAM: lipolytic protein G-D-S-L family; KEGG: aau:AAur_2636 hypothetical protein YP_001360978.1 SMART: AAA ATPase; KEGG: fal:FRAAL1799 ABC transporter YP_001360977.1 KEGG: rxy:Rxyl_0149 hypothetical protein YP_001360976.1 PFAM: extracellular solute-binding protein family 3; KEGG: mkm:Mkms_3093 extracellular solute-binding protein, family 3 YP_001360975.1 PFAM: ABC transporter inner membrane protein; KEGG: msm:MSMEG_3236 ABC-type amino acid transport system, permease component YP_001360974.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV2984 arginine/ornithine transport protein, ATP-binding protein YP_001360973.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sco:SCO1896 hypothetical protein YP_001360972.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin YP_001360971.1 PFAM: MOSC domain containing protein; KEGG: rpd:RPD_4096 hypothetical protein YP_001360970.1 PFAM: protein of unknown function DUF664; KEGG: sma:SAV3241 hypothetical protein YP_001360969.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pca:Pcar_1336 methyl-accepting chemotaxis protein (MCP) YP_001360968.1 PFAM: ribonuclease BN; KEGG: fal:FRAAL1679 glycosyl transferase YP_001360967.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rha:RHA1_ro00988 transcriptional regulator, AraC family YP_001360966.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: ace:Acel_0550 twitching motility protein YP_001360965.1 TIGRFAM: Anti-sigma factor RshA; KEGG: tfu:Tfu_0549 anti-sigma factor YP_001360964.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5216 RNA polymerase sigma factor YP_001360963.1 PFAM: protein of unknown function DUF159; KEGG: sma:SAV3040 hypothetical protein YP_001360962.1 PFAM: DoxX family protein; KEGG: rha:RHA1_ro00971 hypothetical protein YP_001360961.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001360960.1 PFAM: GTPase EngC; KEGG: sco:SCO5211 hypothetical protein YP_001360959.1 PFAM: vitamin K epoxide reductase; KEGG: mkm:Mkms_1988 vitamin K epoxide reductase YP_001360958.1 TIGRFAM: histidinol-phosphate phosphatase, PFAM: inositol monophosphatase; KEGG: art:Arth_2655 histidinol-phosphate phosphatase YP_001360957.1 PFAM: Abortive infection protein; KEGG: ace:Acel_0933 abortive infection protein YP_001360956.1 PFAM: UspA domain protein; KEGG: mbb:BCG_2340c hypothetical protein YP_001360955.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fal:FRAAL0366 membrane protein (partial match); mechanosensitive ion channel domain YP_001360954.1 KEGG: ace:Acel_0143 hypothetical protein YP_001360953.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_3256 tRNA (guanine-N1)-methyltransferase YP_001360952.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001360951.1 PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; KEGG: sma:SAV6084 anthranilate/para-aminobenzoate synthase component I YP_001360950.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rha:RHA1_ro06478 response regulator, two-component system YP_001360949.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO3757 two component system sensor kinase YP_001360948.1 KEGG: mkm:Mkms_0780 conserved hypothetical protein YP_001360947.1 PFAM: metallophosphoesterase; KEGG: fal:FRAAL0280 serine/threonine protein phosphatase YP_001360946.1 PFAM: methyltransferase type 12; KEGG: sma:SAV2324 hypothetical protein YP_001360945.1 PFAM: protein of unknown function UPF0182; KEGG: aau:AAur_2732 integral membrane protein (UPF0182) YP_001360944.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5 YP_001360943.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: art:Arth_2750 PDZ domain-containing protein YP_001360942.1 KEGG: aau:AAur_2734 hypothetical protein YP_001360941.1 PFAM: ROK family protein; KEGG: nca:Noca_2379 ROK family protein YP_001360940.1 PFAM: inner-membrane translocator; KEGG: mva:Mvan_5291 inner-membrane translocator YP_001360939.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mva:Mvan_5292 ABC transporter-related protein YP_001360938.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_6020 D-xylose-binding periplasmic protein YP_001360937.1 PFAM: protein of unknown function DUF45; KEGG: nca:Noca_1523 protein of unknown function DUF45 YP_001360936.1 KEGG: nca:Noca_1520 hypothetical protein YP_001360935.1 KEGG: ace:Acel_1768 UBA/ThiF-type NAD/FAD binding protein YP_001360933.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; transcription factor WhiB; KEGG: sco:SCO5190 DNA-binding protein YP_001360931.1 PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 ATP-dependent DNA helicase (UvrD/REP) YP_001360930.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sco:SCO5187 glutaredoxin-like protein YP_001360929.1 KEGG: sco:SCO1975 hypothetical protein YP_001360928.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: sma:SAV3074 NADH pyrophosphatase YP_001360927.1 PFAM: aminoglycoside phosphotransferase; KEGG: art:Arth_2755 aminoglycoside phosphotransferase YP_001360926.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3798 endonuclease/exonuclease/phosphatase YP_001360925.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_3088 phospholipid/glycerol acyltransferase YP_001360924.1 PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_0524 DNA helicase YP_001360923.1 PFAM: UvrD/REP helicase; KEGG: art:Arth_2757 UvrD/REP helicase YP_001360922.1 PFAM: methylenetetrahydrofolate reductase; KEGG: fal:FRAAL2163 5,10-methylenetetrahydrofolate reductase YP_001360921.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sma:SAV3078 hypothetical protein YP_001360920.1 KEGG: tfu:Tfu_0618 hypothetical protein YP_001360919.1 KEGG: art:Arth_2776 hypothetical protein YP_001360918.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_2785 DEAD/DEAH box helicase domain protein YP_001360917.1 KEGG: sma:SAV1266 hypothetical protein YP_001360916.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: aau:AAur_2770 MarC family integral membrane protein YP_001360915.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: art:Arth_2787 PHP C-terminal domain protein YP_001360914.1 KEGG: sma:SAV3104 hypothetical protein YP_001360913.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: aau:AAur_2773 Xaa-Pro aminopeptidase I YP_001360912.1 KEGG: art:Arth_2789 hypothetical protein YP_001360911.1 PFAM: Ferritin Dps family protein; KEGG: sco:SCO0596 DNA-binding protein YP_001360910.1 PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: ace:Acel_1818 MgtE intracellular region YP_001360909.1 PFAM: protein of unknown function DUF1003; KEGG: aau:AAur_2776 protein of unknown function (DUF1003) YP_001360908.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ace:Acel_2090 type II secretion system protein E YP_001360907.1 PFAM: protein of unknown function DUF59; KEGG: aau:AAur_2777 ATP-binding protein Mrp YP_001360906.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: aau:AAur_2778 twin-arginine translocation protein YP_001360905.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sco:SCO5149 protease YP_001360904.1 KEGG: fal:FRAAL6090 hypothetical protein YP_001360903.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5147 ECF-subfamily sigma factor YP_001360902.1 PFAM: O-methyltransferase family 3; methyltransferase type 11; KEGG: art:Arth_2796 O-methyltransferase, family 3 YP_001360901.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: nca:Noca_1207 leucyl aminopeptidase YP_001360900.1 KEGG: sma:SAV3119 hypothetical protein YP_001360899.1 KEGG: art:Arth_2798 integral membrane protein YP_001360898.1 KEGG: sma:SAV2063 hypothetical protein YP_001360897.1 KEGG: ace:Acel_1838 hypothetical protein YP_001360896.1 PFAM: conserved hypothetical protein 730; KEGG: fal:FRAAL6099 conserved hypothetical protein; lysine decarboxylase YP_001360895.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate YP_001360894.1 KEGG: nca:Noca_1195 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_001360893.1 KEGG: art:Arth_2807 hypothetical protein YP_001360892.1 TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: mpa:MAP0829 citrate synthase YP_001360891.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis YP_001360890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aau:AAur_2797 ferredoxin YP_001360889.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO5134 hypothetical protein YP_001360888.1 PFAM: acyl-CoA dehydrogenase type 2 domain; KEGG: bch:Bcen2424_6750 acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001360887.1 PFAM: peptidase M41; ATPase AAA; SMART: AAA ATPase; KEGG: ace:Acel_1869 AAA ATPase, central domain protein YP_001360886.1 PFAM: LmbE family protein; KEGG: nca:Noca_1157 LmbE family protein YP_001360885.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nca:Noca_4060 GTP-binding protein TypA YP_001360884.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: rxy:Rxyl_0757 choline/carnitine/betaine transport YP_001360883.1 PFAM: NUDIX hydrolase; KEGG: aau:AAur_1618 MutT/NUDIX family protein YP_001360882.1 PFAM: protein of unknown function DUF305; KEGG: nfa:pnf1480 hypothetical protein YP_001360881.1 KEGG: rxy:Rxyl_0591 hypothetical protein YP_001360880.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro04336 ABC peptide transporter, ATP-binding component YP_001360879.1 PFAM: ABC transporter inner membrane protein; KEGG: cef:CE1886 peptide ABC transporter permease protein YP_001360878.1 PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro04334 ABC peptide transporter, permease component YP_001360877.1 PFAM: extracellular solute-binding protein family 5; KEGG: cef:CE1884 peptide ABC transporter peptide-binding protein YP_001360876.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001360875.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001360874.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sma:SAV3211 exoribonuclease large subunit YP_001360873.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: exonuclease VII small subunit; KEGG: nca:Noca_1073 exodeoxyribonuclease VII, small subunit YP_001360872.1 KEGG: art:Arth_1183 hypothetical protein YP_001360871.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001360870.1 PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase YP_001360869.1 KEGG: ade:Adeh_1016 glycosyl transferase, group 1 YP_001360868.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mva:Mvan_2541 ABC transporter-related protein YP_001360867.1 PFAM: ABC transporter inner membrane protein; KEGG: mva:Mvan_2542 ABC transporter inner membrane protein YP_001360866.1 PFAM: ABC transporter inner membrane protein; KEGG: mva:Mvan_2543 ABC transporter inner membrane protein YP_001360865.1 PFAM: extracellular solute-binding protein family 1; KEGG: mva:Mvan_2544 extracellular solute-binding protein, family 1 YP_001360864.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001360863.1 PFAM: sodium/hydrogen exchanger; KEGG: rha:RHA1_ro05037 Na+/H+ antiporter YP_001360862.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: art:Arth_2281 RNA-binding S4 domain protein YP_001360861.1 KEGG: rha:RHA1_ro04031 hypothetical protein YP_001360860.1 KEGG: tfu:Tfu_0458 secreted protein YP_001360859.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: art:Arth_1174 PhoH family protein YP_001360858.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ace:Acel_1881 undecaprenyl diphosphate synthase YP_001360857.1 PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_5145 extracellular solute-binding protein, family protein 1 YP_001360856.1 PFAM: Hly-III family protein; KEGG: sco:SCO4978 integral membrane protein YP_001360855.1 PFAM: protein of unknown function DUF255; KEGG: tfu:Tfu_0451 conserved hypothetical protein YP_001360854.1 PFAM: oxidoreductase domain protein; KEGG: sma:SAV1051 oxidoreductase YP_001360853.1 PFAM: LmbE family protein; KEGG: tfu:Tfu_0449 hypothetical protein YP_001360852.1 KEGG: nfa:nfa48250 hypothetical protein YP_001360851.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: art:Arth_1167 GreA/GreB family elongation factor YP_001360850.1 PFAM: protein of unknown function UPF0118; KEGG: nca:Noca_0978 protein of unknown function UPF0118 YP_001360849.1 KEGG: ace:Acel_1892 magnesium chelatase, ChlI subunit YP_001360848.1 KEGG: eli:ELI_07935 hypothetical protein YP_001360847.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mkm:Mkms_0358 methylmalonate-semialdehyde dehydrogenase YP_001360846.1 SMART: von Willebrand factor type A; KEGG: nfa:nfa44110 hypothetical protein YP_001360845.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: nca:Noca_3278 major facilitator superfamily MFS_1 YP_001360844.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nca:Noca_0976 cystathionine gamma-synthase YP_001360843.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: xla:379956 methionine sulfoxide reductase A YP_001360842.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aau:AAur_0436 two-component system response regulator YP_001360841.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nfa:nfa38730 two-component system sensor kinase YP_001360840.1 KEGG: aau:AAur_0434 integral membrane protein YP_001360839.1 PFAM: protein of unknown function DUF993; KEGG: art:Arth_2424 protein of unknown function DUF993 YP_001360838.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: tfu:Tfu_1721 oxidoreductase YP_001360837.1 KEGG: bba:Bd0708 probable macrolide-specific efflux protein YP_001360836.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sdn:Sden_2367 ABC transporter YP_001360835.1 PFAM: protein of unknown function DUF214; KEGG: sth:STH977 ABC transporter permease protein YP_001360834.1 TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: msm:MSMEG_5270 cystathionine beta-synthase YP_001360832.1 PFAM: protein of unknown function DUF1112; KEGG: sco:SCO3083 integral membrane protein YP_001360831.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: nca:Noca_0935 uracil-DNA glycosylase superfamily YP_001360830.1 KEGG: sma:SAV1904 hypothetical protein YP_001360829.1 PFAM: protein of unknown function DUF419; KEGG: nfa:nfa3700 hypothetical protein YP_001360828.1 PFAM: Ppx/GppA phosphatase; KEGG: art:Arth_1150 Ppx/GppA phosphatase YP_001360827.1 PFAM: protein of unknown function DUF501; KEGG: sco:SCO3094 hypothetical protein YP_001360826.1 PFAM: septum formation initiator; KEGG: tfu:Tfu_0429 hypothetical protein YP_001360825.1 PFAM: enolase; KEGG: fra:Francci3_3923 phosphopyruvate hydratase YP_001360823.1 PFAM: ROK family protein; KEGG: mul:MUL_0739 carbohydrate kinase YP_001360822.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_001360821.1 PFAM: lipolytic protein G-D-S-L family; KEGG: lxx:Lxx14920 hypothetical protein YP_001360820.1 PFAM: glycoside hydrolase family 10; carbohydrate-binding CenC domain protein; Hyalin; KEGG: sus:Acid_4394 endo-1,4-beta-xylanase YP_001360819.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sco:SCO3109 transcriptional-repair coupling factor YP_001360818.1 KEGG: mva:Mvan_1680 conserved hypothetical protein YP_001360817.1 KEGG: sma:SAV4435 hypothetical protein YP_001360816.1 PFAM: glycosyl transferase group 1; KEGG: pab:PAB0973 LPS biosynthesis RfbU related protein YP_001360815.1 PFAM: glycoside hydrolase family 10; glycoside hydrolase family 5; KEGG: bch:Bcen2424_4202 hypothetical protein YP_001360814.1 PFAM: glycosyl transferase group 1; KEGG: tbd:Tbd_1784 probable glycosyltransferase YP_001360812.1 KEGG: mma:MM1643 oligosaccharide repeat unit transporter YP_001360811.1 KEGG: mth:MTH339 hypothetical protein YP_001360809.1 PFAM: glycosyl transferase family 2; KEGG: sus:Acid_7439 glycosyl transferase, family 2 YP_001360808.1 KEGG: sco:SCO3470 transposase YP_001360807.1 PFAM: glycosyl transferase group 1; KEGG: tko:TK0891 glycosyltransferase, family 4 YP_001360806.1 PFAM: peptidyl-tRNA hydrolase; KEGG: art:Arth_1220 aminoacyl-tRNA hydrolase YP_001360805.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: nca:Noca_0911 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001360804.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001360803.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: aau:AAur_1343 UDP-N-acetylglucosamine pyrophosphorylase YP_001360802.1 PFAM: regulatory protein TetR; KEGG: sma:SAV3568 TetR-family transcriptional regulator YP_001360801.1 PFAM: regulatory protein MarR; KEGG: sco:SCO3133 MarR-family regulator YP_001360800.1 PFAM: sugar transferase; KEGG: ace:Acel_1939 undecaprenyl-phosphate galactose phosphotransferase YP_001360799.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_1339 ABC transporter, ATP-binding protein YP_001360798.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: ace:Acel_0181 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_001360797.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001360796.1 PFAM: protein of unknown function DUF348; transglycosylase; G5 domain protein; KEGG: ace:Acel_0177 G5 domain protein YP_001360795.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: art:Arth_1211 hydrolase, TatD family YP_001360794.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001360793.1 KEGG: mkm:Mkms_4521 conserved hypothetical protein YP_001360792.1 KEGG: art:Arth_3616 hypothetical protein YP_001360791.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: nfa:nfa35710 quinone oxidoreductase YP_001360790.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO1066 LacI-family transcriptional regulator YP_001360789.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: aau:AAur_0688 alpha-L-arabinofuranosidase YP_001360788.1 KEGG: pac:PPA0050 hypothetical protein YP_001360787.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: aau:AAur_0992 DNA/RNA non-specific endonuclease family protein YP_001360785.1 PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL1119 PadR-like family transcriptional regulator YP_001360784.1 PFAM: D-aminoacylase domain protein; amidohydrolase; KEGG: msm:MSMEG_3787 D-aminoacylase YP_001360783.1 KEGG: rha:RHA1_ro02460 possible D-amino acid deaminase YP_001360782.1 PFAM: endoribonuclease L-PSP; KEGG: lxx:Lxx00630 protein synthesis inhibitor YP_001360781.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sma:SAV2747 phosphodiesterase YP_001360780.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV1772 mutase YP_001360779.1 PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase YP_001360778.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_001360777.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_0776 short-chain dehydrogenase/reductase SDR YP_001360776.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3418 major facilitator superfamily (MFS) transporter YP_001360775.1 PFAM: ROK family protein; KEGG: msm:MSMEG_3313 xylose repressor YP_001360774.1 PFAM: regulatory protein IclR; IclR family transcriptional regulator; KEGG: msm:MSMEG_6757 glycerol operon regulatory protein YP_001360773.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: msm:MSMEG_6756 glycerol kinase YP_001360772.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV2395 potassium transport system, two-component system response regulator YP_001360771.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: sma:SAV2396 potassium transport system, two-component system sensor kinase YP_001360770.1 TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; KEGG: atc:AGR_L_2092 potassium-transporting ATPase C chain YP_001360769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase subunit B; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rha:RHA1_ro01231 potassium-transporting ATPase B chain YP_001360768.1 TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; KEGG: fra:Francci3_3287 potassium-transporting ATPase, A subunit YP_001360766.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_5559 metabolite/sugar transport protein YP_001360765.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase YP_001360764.1 PFAM: zinc finger SWIM domain protein; KEGG: mtc:MT2162 hypothetical protein YP_001360763.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001360762.1 PFAM: APHP domain protein; KEGG: sco:SCO7037 secreted protein YP_001360761.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV5003 glycerol-3-phosphate dehydrogenase YP_001360760.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001360759.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sma:SAV7200 transport integral membrane protein YP_001360758.1 PFAM: EAL domain protein; KEGG: fal:FRAAL6490 hypothetical protein YP_001360757.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5401 probable integral membrane protein YP_001360756.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO4764 dehydrogenase YP_001360755.1 PFAM: GAF domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV7504 magnesium or manganese-dependent protein phosphatase YP_001360754.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001360753.1 PFAM: FAD linked oxidase domain protein; KEGG: fal:FRAAL2801 hypothetical protein YP_001360752.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; KEGG: cdi:DIP1342 3-dehydroquinate dehydratase YP_001360751.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: rha:RHA1_ro05971 DNA-3-methyladenine glycosylase I YP_001360750.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa24230 oxidoreductase YP_001360746.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: mav:MAV_4544 exodeoxyribonuclease V, alpha subunit YP_001360745.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: rha:RHA1_ro01837 exodeoxyribonuclease V beta subunit YP_001360744.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: rha:RHA1_ro01838 exodeoxyribonuclease V gamma subunit YP_001360743.1 PFAM: luciferase family protein; KEGG: nfa:nfa23110 monooxygenase YP_001360742.1 PFAM: protein of unknown function DUF1212; KEGG: nfa:nfa24750 hypothetical protein YP_001360741.1 KEGG: fal:FRAAL0696 hypothetical protein YP_001360740.1 KEGG: dge:Dgeo_2867 phosphoribulokinase/uridine kinase YP_001360739.1 PFAM: phosphoglycerate mutase; KEGG: sco:SCO7630 isomerase YP_001360737.1 KEGG: fal:FRAAL1613 hypothetical protein YP_001360736.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: aau:AAur_0083 oxidoreductase family, NAD-binding Rossmann fold domain protein YP_001360735.1 PFAM: PfkB domain protein; KEGG: bur:Bcep18194_C7623 ribokinase YP_001360734.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: rha:RHA1_ro06652 probable Fe(2+)-dependent transcriptional regulator YP_001360733.1 PFAM: aminotransferase class V; KEGG: mva:Mvan_5482 aminotransferase, class V YP_001360732.1 KEGG: nca:Noca_0934 hypothetical protein YP_001360731.1 KEGG: fra:Francci3_2143 hypothetical protein YP_001360730.1 KEGG: sco:SCO3055 hypothetical protein YP_001360728.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; oxidoreductase; KEGG: aau:AAur_1535 oxidoreductase family, NAD-binding Rossmann fold domain protein YP_001360727.1 KEGG: art:Arth_0085 hypothetical protein YP_001360726.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_0088 ABC transporter inner membrane protein YP_001360725.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO0291 binding protein dependent transport protein YP_001360724.1 PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_5145 extracellular solute-binding protein, family protein 1 YP_001360723.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_5143 HTH-type transcriptional regulator DegA YP_001360721.1 KEGG: fra:Francci3_1855 hypothetical protein YP_001360720.1 PFAM: aldo/keto reductase; KEGG: ace:Acel_0148 aldo/keto reductase YP_001360719.1 PFAM: LGFP repeat protein; SCP-like extracellular; KEGG: rha:RHA1_ro04060 probable antigen 85 complex protein YP_001360718.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: sco:SCO7506 hydrolase YP_001360717.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7503 extracellular solute-binding protein YP_001360716.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_0686 ABC-type sugar transport systems, permease components YP_001360715.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO7505 integral membrane binding-protein-dependent transport protein YP_001360714.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase YP_001360713.1 PFAM: luciferase family protein; KEGG: sma:SAV4255 hypothetical protein YP_001360712.1 KEGG: rha:RHA1_ro05523 hypothetical protein YP_001360711.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_0179 glyoxalase family protein YP_001360710.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: aau:AAur_0180 transcriptional regulator, AraC family YP_001360708.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV5596 acetyltransferase YP_001360707.1 KEGG: art:Arth_3801 ANTAR domain protein YP_001360705.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_3744 ribosomal-protein-alanine acetyltransferase YP_001360704.1 PFAM: protein of unknown function DUF1486; KEGG: mkm:Mkms_4171 protein of unknown function DUF1486 YP_001360703.1 PFAM: beta-lactamase; KEGG: sru:SRU_2721 beta-lactamase YP_001360702.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001360701.1 PFAM: UspA domain protein; KEGG: tfu:Tfu_3041 stress-inducible protein YP_001360699.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO7759 DNA-binding protein YP_001360698.1 KEGG: mva:Mvan_3260 hypothetical protein YP_001360697.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: blo:BL1741 probable aspartate aminotransferase YP_001360696.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: aau:AAur_2109 zinc metallopeptidase YP_001360695.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_3737 acetyltransferase, GNAT family protein YP_001360694.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rha:RHA1_ro02221 ABC peptide transporter, ATP-binding component YP_001360693.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_3436 ABC-type dipeptide/oligopeptide/nickel transport systems, permease component YP_001360692.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_3437 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_001360691.1 PFAM: extracellular solute-binding protein family 5; KEGG: aau:AAur_3438 ABC-type dipeptide/oligopeptide transport system YP_001360690.1 PFAM: aminoglycoside phosphotransferase YP_001360689.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001360688.1 PFAM: methylenetetrahydrofolate reductase; KEGG: art:Arth_2367 deleted entry YP_001360687.1 PFAM: aminotransferase class V; KEGG: fal:FRAAL4247 selenocysteine lyase YP_001360686.1 SMART: Rhodanese domain protein; KEGG: aau:AAur_3443 rhodanese-like domain protein YP_001360684.1 KEGG: aau:AAur_3440 monooxygenase YP_001360683.1 KEGG: rha:RHA1_ro02225 probable nitrilotriacetate monoxygenase, component A YP_001360682.1 KEGG: hhe:HH1214 hypothetical protein YP_001360681.1 KEGG: sma:SAV6547 hypothetical protein YP_001360680.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_3909 polar amino acid ABC transporter, inner membrane subunit YP_001360679.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rha:RHA1_ro02230 ABC amino acid transporter, ATP-binding component YP_001360678.1 PFAM: extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro02229 ABC amino acid transporter, permease component YP_001360677.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: mkm:Mkms_0260 flavin reductase domain protein, FMN-binding YP_001360676.1 KEGG: reh:H16_A3217 hypothetical membrane associated protein YP_001360675.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dge:Dgeo_0681 hypothetical protein YP_001360674.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_1710 regulatory protein, LacI YP_001360673.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nca:Noca_3365 protein kinase YP_001360672.1 PFAM: glycosyl transferase family 20; KEGG: aau:AAur_0931 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001360671.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: lxx:Lxx13220 trehalose-phosphatase protein YP_001360670.1 PFAM: sodium/hydrogen exchanger; KEGG: sma:SAV7389 sodium/proton antiporter YP_001360669.1 PFAM: TrkA-C domain protein; KEGG: fra:Francci3_1892 TrkA-like YP_001360668.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aau:AAur_0929 sugar ABC transportor, ATP-binding protein YP_001360667.1 KEGG: lxx:Lxx18190 hypothetical protein YP_001360666.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: art:Arth_3454 NAD-dependent epimerase/dehydratase YP_001360665.1 PFAM: regulatory protein MarR; KEGG: aau:AAur_3758 transcriptional regulator, MarR family YP_001360664.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: nca:Noca_4020 RNA methyltransferase, TrmH family, group 3 YP_001360663.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001360662.1 PFAM: UBA/THIF-type NAD/FAD binding protein; alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mkm:Mkms_3442 alcohol dehydrogenase, zinc-binding domain protein YP_001360661.1 PFAM: beta-lactamase domain protein; KEGG: sco:SCO0740 hydrolase YP_001360660.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sco:SCO2772 membrane transport protein YP_001360659.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro05875 hypothetical protein YP_001360658.1 PFAM: regulatory protein TetR; KEGG: msm:MSMEG_4300 transcription regulator AmtR YP_001360657.1 catalyzes the hydrolysis of allophanate YP_001360656.1 TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: cef:CE0713 UreA carboxylase YP_001360655.1 KEGG: cef:CE0714 hypothetical protein YP_001360654.1 KEGG: cef:CE0715 hypothetical protein YP_001360653.1 PFAM: amino acid permease-associated region; KEGG: nfa:nfa22220 amino acid permease YP_001360652.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001360651.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sma:SAV3969 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001360650.1 PFAM: transcription factor CarD; KEGG: sma:SAV3970 CarD-like transcriptional regulator YP_001360649.1 KEGG: aau:AAur_0896 lipoprotein YP_001360648.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sma:SAV3972 two-component system response regulator YP_001360647.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sco:SCO4229 sensor kinase YP_001360646.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sco:SCO4228 phosphate transport system regulator YP_001360645.1 KEGG: bta:789503 similar to mucin 5 YP_001360644.1 PFAM: glycosyl transferase group 1; KEGG: net:Neut_2115 glycosyl transferase, group 1 YP_001360643.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001360642.1 PFAM: glycosyl transferase group 1; KEGG: sma:SAV4006 glycosyl transferase YP_001360641.1 KEGG: aau:AAur_0891 hypothetical protein YP_001360640.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001360638.1 KEGG: aau:AAur_0890 integral membrane protein YP_001360637.1 KEGG: ace:Acel_0065 AmfC protein YP_001360636.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: art:Arth_3008 glycine cleavage T protein (aminomethyl transferase) YP_001360635.1 PFAM: ferric-uptake regulator; KEGG: nca:Noca_4251 ferric-uptake regulator YP_001360634.1 PFAM: Domain of unknown function DUF1794; KEGG: lxx:Lxx18350 hypothetical protein YP_001360632.1 KEGG: art:Arth_3011 hypothetical protein YP_001360631.1 PFAM: transcriptional regulator domain protein; KEGG: ace:Acel_2025 response regulator receiver protein YP_001360630.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL0935 acetyltransferase YP_001360629.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001360628.1 PFAM: NUDIX hydrolase; phosphoglycerate mutase; KEGG: nca:Noca_4264 NUDIX hydrolase YP_001360627.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0341 phosphate-binding protein YP_001360626.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: ABC transporter inner membrane protein; KEGG: nfa:nfa6010 phosphate transport system permease protein YP_001360625.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: ABC transporter inner membrane protein; KEGG: nfa:nfa6020 phosphate transport system permease protein YP_001360624.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001360623.1 PFAM: phosphate transporter; KEGG: nca:Noca_4259 phosphate transporter YP_001360622.1 PFAM: protein of unknown function DUF47; KEGG: sma:SAV4077 Pit accessory protein YP_001360620.1 PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein YP_001360619.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_0234 oxidoreductase, short chain dehydrogenase/reductase family YP_001360618.1 PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 ferric uptake regulator YP_001360617.1 PFAM: catalase domain protein; KEGG: nfa:nfa55390 catalase YP_001360615.1 PFAM: helix-turn-helix HxlR type; KEGG: fal:FRAAL6794 transcriptional regulatory protein YP_001360614.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: fal:FRAAL6795 oxidoreductase YP_001360613.1 KEGG: tfu:Tfu_0824 hypothetical protein YP_001360612.1 PFAM: beta-lactamase; KEGG: bja:blr5513 hypothetical protein YP_001360611.1 PFAM: OsmC family protein; KEGG: rha:RHA1_ro04426 osmotically inducible protein C, OsmC YP_001360610.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sco:SCO4096 ATP-dependent RNA helicase YP_001360609.1 TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; KEGG: pau:PA14_53480 phosphate acetyltransferase YP_001360608.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: nmc:NMC1447 acetate kinase YP_001360607.1 PFAM: TENA/THI-4 domain protein; KEGG: rha:RHA1_ro01597 possible transcriptional activator TenA YP_001360606.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: rle:pRL110441 phosphomethylpyrimidine kinase YP_001360605.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: rsp:RSP_0648 thiamine-phosphate pyrophosphorylase YP_001360604.1 PFAM: hydroxyethylthiazole kinase; KEGG: gbe:GbCGDNIH1_0300 hydroxyethylthiazole kinase YP_001360603.1 KEGG: rxy:Rxyl_0838 hypothetical protein YP_001360602.1 PFAM: aldo/keto reductase; KEGG: ace:Acel_1715 aldo/keto reductase YP_001360601.1 KEGG: ace:Acel_2023 hypothetical protein YP_001360600.1 TIGRFAM: thioredoxin; PFAM: thioredoxin; KEGG: nca:Noca_0143 thioredoxin YP_001360598.1 KEGG: rha:RHA1_ro05368 possible glycosyl transferase YP_001360596.1 PFAM: Excalibur domain protein; KEGG: art:Arth_0951 Excalibur domain protein YP_001360593.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV2610 aldehyde dehydrogenase YP_001360592.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_0042 amino acid permease-associated region YP_001360591.1 PFAM: UspA domain protein; KEGG: aau:AAur_0044 universal stress family domain protein YP_001360590.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: art:Arth_0040 putrescine oxidase YP_001360589.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: art:Arth_0039 transcriptional regulator, TetR family YP_001360588.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO1682 L-idonate 5-dehydrogenase YP_001360587.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001360586.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001360585.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: fal:FRAAL0164 peptidyl-arginine deiminase YP_001360584.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro03859 probable tetracycline repressor YP_001360583.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: nca:Noca_1924 ANTAR domain protein YP_001360582.1 PFAM: protein of unknown function UPF0126; KEGG: rxy:Rxyl_2647 protein of unknown function UPF0126 YP_001360581.1 TIGRFAM: ATP-dependent DNA helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_0948 ATP-dependent DNA helicase YP_001360580.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1065 short-chain dehydrogenase/reductase SDR YP_001360579.1 KEGG: mkm:Mkms_2710 radical SAM domain protein YP_001360578.1 KEGG: sco:SCO0844 DNA-binding protein YP_001360577.1 PFAM: cyclase/dehydrase; KEGG: fal:FRAAL6787 hypothetical protein YP_001360576.1 KEGG: cef:CE2690 hypothetical protein YP_001360575.1 PFAM: PRC-barrel domain protein; KEGG: aau:AAur_3970 conserved domain protein YP_001360573.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rha:RHA1_ro00098 sigma factor, sigma 70 type, group 3 YP_001360572.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_0349 NAD-dependent epimerase/dehydratase YP_001360571.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: fra:Francci3_0333 Rieske (2Fe-2S) protein YP_001360570.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_3437 alcohol dehydrogenase GroES domain protein YP_001360569.1 KEGG: nca:Noca_3804 hypothetical protein YP_001360568.1 KEGG: sma:SAV6381 endo-1,4-beta-xylanase YP_001360567.1 PFAM: manganese containing catalase; KEGG: nfa:nfa11820 manganese-containing catalase YP_001360566.1 KEGG: art:Arth_3106 hypothetical protein YP_001360565.1 PFAM: OsmC family protein; KEGG: mkm:Mkms_1194 OsmC family protein YP_001360563.1 KEGG: art:Arth_3945 hypothetical protein YP_001360562.1 KEGG: aau:AAur_0122 hypothetical protein YP_001360561.1 PFAM: protein of unknown function DUF1469; KEGG: fal:FRAAL0500 hypothetical protein YP_001360560.1 KEGG: cef:CE2890 hypothetical protein YP_001360559.1 PFAM: periplasmic binding protein; KEGG: msm:MSMEG_0020 periplasmic binding protein YP_001360558.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001360557.1 TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; Ribonucleotide reductase domain protein; KEGG: msm:MSMEG_2299 ribonucleoside-diphosphate reductase, alpha subunit YP_001360556.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: aau:AAur_2340 NrdI protein YP_001360555.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: msm:MSMEG_2297 glutaredoxin YP_001360554.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro04084 transcriptional regulator, LacI family YP_001360553.1 PFAM: protein of unknown function DUF718; KEGG: nfa:nfa32910 hypothetical protein YP_001360552.1 KEGG: mag:amb3955 exopolyphosphatase-related protein YP_001360551.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3164 major facilitator superfamily MFS_1 YP_001360550.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppd:Ppro_1744 3-oxoacyl-(acyl-carrier-protein) reductase YP_001360549.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_0330 short-chain dehydrogenase/reductase SDR YP_001360548.1 PFAM: isochorismatase hydrolase; KEGG: pac:PPA0618 hydrolase, isochorismatase YP_001360546.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5934 sigma factor YP_001360544.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0721 glyoxalase family protein YP_001360543.1 PFAM: aryldialkylphosphatase; KEGG: rle:RL3124 esterase YP_001360542.1 KEGG: rso:RSc1301 hypothetical protein YP_001360541.1 PFAM: cyclase/dehydrase; KEGG: art:Arth_3114 hypothetical protein YP_001360540.1 PFAM: Domain of unknown function DUF1801; KEGG: dge:Dgeo_1178 hypothetical protein YP_001360538.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL2503 short-chain dehydrogenase/oxidoreductase YP_001360537.1 PFAM: MOSC domain containing protein; KEGG: bpe:BP1518 hypothetical protein YP_001360536.1 PFAM: protein of unknown function DUF156; KEGG: ace:Acel_1650 protein of unknown function DUF156 YP_001360535.1 PFAM: Heavy metal transport/detoxification protein; KEGG: aau:AAur_pTC10131 heavy metal-associated domain protein YP_001360534.1 KEGG: mkm:Mkms_1469 conserved hypothetical protein YP_001360533.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mkm:Mkms_1470 heavy metal translocating P-type ATPase YP_001360532.1 PFAM: regulatory protein TetR; KEGG: mkm:Mkms_2422 transcriptional regulator, TetR family YP_001360531.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_3324 short-chain dehydrogenase/reductase SDR YP_001360530.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nfa:nfa19310 monooxygenase YP_001360529.1 KEGG: fal:FRAAL3925 hypothetical protein YP_001360528.1 KEGG: sco:SCO7299 stress-inducible protein YP_001360527.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO1066 LacI-family transcriptional regulator YP_001360526.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: sme:SMb21341 hypothetical protein YP_001360525.1 PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro05388 amino acid transporter, APC family YP_001360524.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: sco:SCO4284 N-acetylglucosamine-6-phosphate deacetylase YP_001360523.1 PFAM: sugar isomerase (SIS); KEGG: ace:Acel_0556 glutamine--fructose-6-phosphate transaminase (isomerizing) YP_001360522.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sma:SAV3923 RpiR-family transcriptional regulator YP_001360521.1 KEGG: sma:SAV5089 hypothetical protein YP_001360520.1 KEGG: rru:Rru_A1249 kinase-like YP_001360519.1 catalyzes the formation of pyruvate from D-cysteine YP_001360518.1 PFAM: FAD linked oxidase domain protein; KEGG: fal:FRAAL3861 glycolate oxidoreductase (partial match) YP_001360517.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_001360516.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nfa:nfa28580 hypothetical protein YP_001360513.1 PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2125 hydrolase YP_001360512.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: fra:Francci3_4252 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001360511.1 PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll2002 probable hydrolase YP_001360510.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 ATP-dependent DNA helicase II YP_001360509.1 PFAM: regulatory protein TetR; KEGG: mpa:MAP0794 hypothetical protein YP_001360508.1 PFAM: MMPL domain protein; KEGG: sco:SCO3166 membrane transport protein YP_001360507.1 PFAM: NUDIX hydrolase; KEGG: nca:Noca_0715 NUDIX hydrolase YP_001360506.1 KEGG: fra:Francci3_4327 hypothetical protein YP_001360505.1 KEGG: sma:SAV4563 hypothetical protein YP_001360504.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: fal:FRAAL1899 transcriptional regulator YP_001360503.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO3679 hypothetical protein YP_001360502.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001360501.1 PFAM: ABC transporter transmembrane protein; ABC transporter; KEGG: sma:SAV1569 ABC transporter transmembrane subunit YP_001360500.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO5448 ABC transporter YP_001360499.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO0647 short chain oxidoreductase YP_001360498.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_2555 major facilitator superfamily (MFS) transporter YP_001360497.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mkm:Mkms_0609 short-chain dehydrogenase/reductase SDR YP_001360496.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001360495.1 TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: aau:AAur_2867 inosine-5'-monophosphate dehydrogenase YP_001360494.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001360493.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tfu:Tfu_2597 RNA polymerase ECF-subfamily sigma factor YP_001360492.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV4998 two-component system response regulator YP_001360491.1 PFAM: regulatory protein MerR; KEGG: sma:SAV1214 transcriptional regulator YP_001360490.1 PFAM: transcription factor WhiB; KEGG: fal:FRAAL1135 WhiB-family transcriptional regulator; role in cell cycle control YP_001360489.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_001360488.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001360487.1 KEGG: art:Arth_2888 hypothetical protein YP_001360486.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4751 acetyltransferase YP_001360485.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_1107 major facilitator superfamily (MFS) transporter YP_001360484.1 PFAM: peptidase M22 glycoprotease; KEGG: sma:SAV4972 hypothetical protein YP_001360483.1 PFAM: alpha/beta hydrolase fold; KEGG: nca:Noca_3105 alpha/beta hydrolase fold YP_001360482.1 PFAM: protein of unknown function UPF0079; KEGG: ace:Acel_0357 protein of unknown function UPF0079 YP_001360481.1 PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO4746 lipase YP_001360480.1 TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: fra:Francci3_0622 alanine racemase YP_001360479.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: nca:Noca_0899 carbohydrate kinase, YjeF related protein YP_001360478.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: nca:Noca_0897 holo-acyl-carrier-protein synthase YP_001360477.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001360476.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001360475.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO4736 phospho-sugar mutase YP_001360474.1 forms a direct contact with the tRNA during translation YP_001360473.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001360472.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_4180 ABC transporter, ATP-binding protein YP_001360471.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV6469 hypothetical protein YP_001360470.1 PFAM: tRNA pseudouridine synthase; KEGG: tfu:Tfu_2616 tRNA pseudouridine synthase YP_001360469.1 PFAM: ribosomal protein L17; KEGG: aau:AAur_2917 ribosomal protein L17 YP_001360468.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001360467.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001360466.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001360465.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001360464.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001360463.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: art:Arth_2949 methionine aminopeptidase, type I YP_001360462.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001360461.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sma:SAV4946 translocase subunit YP_001360460.1 late assembly protein YP_001360459.1 PFAM: ribosomal protein L30; KEGG: pac:PPA1843 50S ribosomal protein L30 YP_001360458.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5; KEGG: sco:SCO4719 30S ribosomal protein S5 YP_001360457.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: art:Arth_2960 ribosomal protein L18 YP_001360456.1 PFAM: ribosomal protein L6; KEGG: art:Arth_2961 ribosomal protein L6 YP_001360455.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001360454.1 PFAM: ribosomal protein S14; KEGG: mkm:Mkms_1045 ribosomal protein S14 YP_001360453.1 PFAM: ribosomal protein L5; KEGG: fal:FRAAL1093 50S ribosomal subunit protein L5 YP_001360452.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001360451.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: sma:SAV4936 ribosomal protein L14 YP_001360450.1 PFAM: ribosomal protein S17; KEGG: aau:AAur_2939 ribosomal protein S17 YP_001360449.1 PFAM: ribosomal protein L29; KEGG: lxx:Lxx20250 50S ribosomal protein L29 YP_001360448.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001360447.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein; KEGG: art:Arth_2969 ribosomal protein S3 YP_001360446.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001360445.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001360444.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001360443.1 PFAM: ribosomal protein L25/L23; KEGG: aau:AAur_2946 ribosomal protein L23 YP_001360442.1 PFAM: ribosomal protein L4/L1e; KEGG: rha:RHA1_ro06134 50S ribosomal protein L4 YP_001360441.1 PFAM: ribosomal protein L3; KEGG: art:Arth_2975 ribosomal protein L3 YP_001360440.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001360438.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001360437.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: aau:AAur_2953 translation elongation factor G YP_001360436.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001360435.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001360434.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001360433.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001360432.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: fra:Francci3_0572 ribosomal protein L7/L12 YP_001360431.1 PFAM: ribosomal protein L10; KEGG: sco:SCO4652 50S ribosomal protein L10 YP_001360430.1 in Escherichia coli and methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001360429.1 PFAM: ribosomal protein L11; KEGG: ace:Acel_0295 ribosomal protein L11 YP_001360428.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KEGG: art:Arth_2995 NusG antitermination factor YP_001360427.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: msm:MSMEG_1344 translocase YP_001360426.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001360425.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: msm:MSMEG_6766 ABC transporter, ATP-binding protein, NodI family protein YP_001360424.1 PFAM: ABC transporter; KEGG: msm:MSMEG_6765 ABC transporter superfamily protein YP_001360423.1 catalyzes the formation of inosine from adenosine YP_001360422.1 KEGG: art:Arth_3016 hypothetical protein YP_001360421.1 PFAM: regulatory protein GntR HTH; KEGG: art:Arth_3017 transcriptional regulator, GntR family YP_001360420.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001360419.1 PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_1769 major facilitator superfamily MFS_1 YP_001360418.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein YP_001360417.1 KEGG: aau:AAur_3002 hypothetical protein YP_001360416.1 PFAM: ribosomal protein L33; KEGG: nca:Noca_0668 ribosomal protein L33 YP_001360415.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001360414.1 KEGG: nfa:nfa52740 hypothetical protein YP_001360413.1 metalloprotease YP_001360412.1 PFAM: GAF domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tfu:Tfu_1271 PAS:protein phosphatase 2C-like:GAF YP_001360411.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein alpha subunit; KEGG: art:Arth_2741 electron transfer flavoprotein, alpha subunit YP_001360410.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: art:Arth_2742 electron transfer flavoprotein beta-subunit YP_001360409.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro02240 probable ferredoxin--NADP(+) reductase YP_001360408.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: art:Arth_3092 RarD protein, DMT superfamily transporter YP_001360407.1 KEGG: msm:MSMEG_0897 hypothetical protein YP_001360406.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_001360405.1 PFAM: DNA primase small subunit; KEGG: rha:RHA1_ro05108 possible DNA ligase (ATP), N-terminal YP_001360404.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001360402.1 PFAM: polyprenyl synthetase; KEGG: aau:AAur_3100 trans-hexaprenyltranstransferase (heptaprenyl diphosphate synthase) YP_001360401.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: tfu:Tfu_2696 geranylgeranyl reductase, plantal and prokaryotic YP_001360400.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: nca:Noca_0519 ubiquinone/menaquinone biosynthesis methyltransferases YP_001360399.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: nca:Noca_0510 2-oxoglutarate decarboxylase YP_001360397.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein YP_001360396.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: aau:AAur_3115 O-succinylbenzoic acid (OSB) synthetase YP_001360395.1 PFAM: GAF domain protein; KEGG: mxa:MXAN_4257 response regulator YP_001360394.1 TIGRFAM: naphthoate synthase; PFAM: enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa51380 dihydroxynaphtoic acid synthetase YP_001360392.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_1490 diguanylate cyclase/phosphodiesterase YP_001360391.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: dar:Daro_1052 PAS:GGDEF YP_001360390.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro02011 acyl-CoA synthetase YP_001360389.1 KEGG: nfa:nfa26690 hypothetical protein YP_001360388.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_001360386.1 PFAM: peptidase S51 dipeptidase E; KEGG: sco:SCO0277 hypothetical protein YP_001360385.1 KEGG: ace:Acel_0260 hypothetical protein YP_001360384.1 PFAM: cytochrome C assembly protein; KEGG: aau:AAur_pTC10173 cytochrome biogenesis protein YP_001360383.1 PFAM: ResB family protein; KEGG: aau:AAur_pTC10174 cytochrome C biogenesis membrane protein, ResB-like family YP_001360382.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: nca:Noca_0502 cytochrome C biogenesis protein, transmembrane region YP_001360381.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: lxx:Lxx01340 thiol:disulfide interchange protein YP_001360380.1 PFAM: phosphoglycerate mutase; KEGG: nca:Noca_0500 phosphoglycerate mutase YP_001360379.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: fal:FRAAL0997 glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent YP_001360377.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV3001 lyase YP_001360376.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV3000 AraC-family transcriptional regulator YP_001360375.1 PFAM: metallophosphoesterase; KEGG: art:Arth_3231 metallophosphoesterase YP_001360374.1 PFAM: aldose 1-epimerase; KEGG: sma:SAV5766 aldose 1-epimerase YP_001360373.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001360372.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: nca:Noca_0496 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001360371.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: sco:SCO3318 porphobilinogen deaminase YP_001360370.1 PFAM: glutamyl-tRNA reductase; shikimate/quinate 5-dehydrogenase; KEGG: fal:FRAAL0983 glutamyl-tRNA reductase (GluTR) YP_001360369.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001360368.1 PFAM: glutaredoxin 2; KEGG: fal:FRAAL0981 redoxin YP_001360367.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tfu:Tfu_2722 HAD-superfamily hydrolase subfamily IB, PSPase-like:HAD-superfamily subfamily IB, PSPase-like YP_001360366.1 PFAM: protein of unknown function DUF1713; KEGG: art:Arth_3300 protein of unknown function DUF1713 YP_001360365.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sma:SAV4731 hypothetical protein YP_001360364.1 PFAM: histone deacetylase superfamily; KEGG: art:Arth_3345 histone deacetylase superfamily YP_001360363.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: nca:Noca_0481 pyrroline-5-carboxylate reductase YP_001360362.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 DNA-binding protein YP_001360361.1 KEGG: sco:SCO3349 conserved hypothetical protein YP_001360360.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: nca:Noca_0472 methyltransferase type 11 YP_001360359.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001360358.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpa:RPA3792 diguanylate cyclase (GGDEF) YP_001360356.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001360355.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001360354.1 PFAM: protein of unknown function DUF892; KEGG: aba:Acid345_2545 protein of unknown function DUF892 YP_001360353.1 KEGG: rha:RHA1_ro04450 hypothetical protein YP_001360352.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: sma:SAV4707 adenine glycosylase YP_001360351.1 PFAM: Class I peptide chain release factor; KEGG: sco:SCO4278 hypothetical protein YP_001360350.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: dra:DR1910 thermoresistant gluconokinase YP_001360349.1 catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis YP_001360348.1 PFAM: UvrB/UvrC protein; ATPase AAA; Clp domain protein; ATPase activities AAA_5; ATPase AAA; SMART: AAA ATPase; KEGG: sco:SCO3373 Clp-family ATP-binding protease YP_001360347.1 PFAM: oxidoreductase domain protein; KEGG: ace:Acel_1039 oxidoreductase domain protein YP_001360346.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: tfu:Tfu_1707 oxidoreductase YP_001360344.1 PFAM: ABC transporter inner membrane protein; KEGG: sme:SMc04137 transport system permease ABC transporter protein YP_001360343.1 PFAM: ABC transporter inner membrane protein; KEGG: tfu:Tfu_1704 transport system permease ABC transporter protein YP_001360342.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_pTC20132 extracellular solute-binding domain protein YP_001360341.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: tfu:Tfu_1705 oxidoreductase YP_001360340.1 PFAM: glucuronate isomerase; KEGG: rsp:RSP_0488 uronate isomerase YP_001360339.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: bcl:ABC0605 oxidoreductase YP_001360338.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: bcl:ABC3277 dehydrogenase YP_001360337.1 KEGG: art:Arth_3330 hypothetical protein YP_001360336.1 PFAM: mannitol dehydrogenase domain; mannitol dehydrogenase rossman domain; KEGG: ace:Acel_0905 mannitol dehydrogenase, C-terminal domain YP_001360335.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_A2758 altronate dehydratase YP_001360334.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator YP_001360333.1 KEGG: fal:FRAAL2980 ABC transporter transmembrane protein YP_001360332.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO5395 ABC transporter ATP-binding subunit YP_001360331.1 KEGG: nca:Noca_0465 hypothetical protein YP_001360329.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nfa:nfa4110 lysyl-tRNA synthetase YP_001360328.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001360327.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: ace:Acel_0210 hypothetical protein YP_001360326.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001360325.1 PFAM: oxidoreductase domain protein; SAF domain protein; KEGG: ava:Ava_1114 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_001360324.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: ana:alr2830 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001360323.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: fra:Francci3_3941 NAD-dependent epimerase/dehydratase YP_001360322.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: fal:FRAAL6241 glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) YP_001360321.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_2118 glycosyl transferase, group 1 YP_001360320.1 PFAM: glycosyl transferase family 2; KEGG: fal:FRAAL6263 glycosyl transferase YP_001360319.1 KEGG: fra:Francci3_3947 glycosyltransferases-like YP_001360318.1 KEGG: fal:FRAAL0656 hypothetical protein YP_001360317.1 KEGG: fal:FRAAL1793 hypothetical protein YP_001360316.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: mva:Mvan_1681 lipopolysaccharide biosynthesis YP_001360315.1 KEGG: fal:FRAAL6247 hypothetical protein; membrane protein YP_001360314.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cdi:DIP1891 serine acetyltransferase YP_001360313.1 KEGG: pfo:Pfl_1691 hypothetical protein YP_001360312.1 KEGG: fal:FRAAL1794 hypothetical protein; membrane protein; IMP dehydrogenase / GMP reductase domain YP_001360311.1 KEGG: fra:Francci3_3929 hypothetical protein YP_001360310.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rha:RHA1_ro04166 probable ubiquinone/menaquinone biosynthesis methyltransferase YP_001360308.1 PFAM: xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sco:SCO3276 integral membrane transporter YP_001360306.1 PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_2680 amino acid transporter YP_001360305.1 TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2681 proline imino-peptidase YP_001360304.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2682 transcriptional regulator YP_001360303.1 PFAM: glycoside hydrolase family 10; KEGG: tfu:Tfu_2791 endo-1,4-beta-xylanase YP_001360302.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV4978 LacI-family transcriptional regulator YP_001360301.1 PFAM: membrane-flanked domain; KEGG: aau:AAur_0145 bacterial membrane flanked domain protein YP_001360300.1 PFAM: membrane-flanked domain; KEGG: fra:Francci3_4357 membrane-flanked domain YP_001360299.1 PFAM: CBS domain containing protein; ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV7409 ABC transporter ATP-binding protein YP_001360298.1 PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2257 glucosyltransferase YP_001360297.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sco:SCO7017 hypothetical protein YP_001360296.1 KEGG: sco:SCO3402 secreted protein YP_001360295.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: sco:SCO3401 hydroxymethyldihydropteridine pyrophosphokinase YP_001360294.1 TIGRFAM: dihydroneopterin aldolase; KEGG: tfu:Tfu_2891 dihydroneopterin aldolase family:dihydroneopterin aldolase YP_001360293.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: fra:Francci3_4407 dihydropteroate synthase YP_001360292.1 PFAM: GTP cyclohydrolase I; KEGG: pac:PPA0261 GTP cyclohydrolase I YP_001360291.1 KEGG: lxx:Lxx21500 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_001360290.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rfr:Rfer_0874 transcriptional regulator, GntR family YP_001360289.1 KEGG: atc:AGR_L_1874 hypothetical protein YP_001360288.1 PFAM: LamB/YcsF family protein; KEGG: aav:Aave_3513 LamB/YcsF family protein YP_001360287.1 PFAM: protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein YP_001360286.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: atc:AGR_L_1866 hypothetical protein YP_001360285.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2 YP_001360284.1 PFAM: protein of unknown function DUF820 YP_001360283.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sco:SCO3405 hypoxanthine phosphoribosyltransferase YP_001360282.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sco:SCO3406 cell cycle protein MesJ YP_001360281.1 KEGG: sco:SCO3407 hypothetical protein YP_001360280.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: aau:AAur_0131 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001360279.1 PFAM: inorganic pyrophosphatase; KEGG: sma:SAV4661 inorganic pyrophosphatase YP_001360278.1 PFAM: regulatory protein MerR; KEGG: tfu:Tfu_1667 regulatory protein, MerR YP_001360277.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: ace:Acel_0604 SMP-30/gluconolaconase/LRE domain protein YP_001360276.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nfa:nfa1410 hypothetical protein YP_001360275.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: art:Arth_3174 transcriptional regulator, TetR family YP_001360274.1 PFAM: PRC-barrel domain protein; KEGG: aau:AAur_3970 conserved domain protein YP_001360273.1 KEGG: art:Arth_3945 hypothetical protein YP_001360272.1 KEGG: rxy:Rxyl_0609 amino acid transporter YP_001360271.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro00086 hypothetical protein YP_001360270.1 PFAM: response regulator receiver; KEGG: sma:SAV2817 two-component system response regulator YP_001360269.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nfa:nfa46340 two-component system sensor kinase YP_001360268.1 PFAM: sodium:dicarboxylate symporter; KEGG: mva:Mvan_4696 sodium:dicarboxylate symporter YP_001360267.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001360266.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mkm:Mkms_1225 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001360264.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO2402 dehydrogenase YP_001360263.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mpt:Mpe_A0661 signal transduction protein YP_001360262.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1703 alpha/beta hydrolase fold YP_001360261.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa45140 oxidoreductase YP_001360260.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_1967 methyltransferase type 11 YP_001360259.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: rha:RHA1_ro00869 possible transcriptional regulator YP_001360258.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO6253 two-component sensor kinase YP_001360257.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: psb:Psyr_2429 hypothetical protein YP_001360256.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: reu:Reut_B5130 helix-turn-helix motif YP_001360255.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: art:Arth_0212 arsenical-resistance protein YP_001360254.1 PFAM: regulatory protein ArsR; KEGG: fra:Francci3_3239 transcriptional regulator, ArsR family YP_001360253.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nfa:pnf2260 arsenate reductase YP_001360252.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rpb:RPB_2178 chromate transporter YP_001360251.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sco:SCO0965 hypothetical protein YP_001360249.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro02026 possible acetyltransferase YP_001360248.1 KEGG: lin:lin0147 hypothetical protein YP_001360247.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mva:Mvan_4619 methyltransferase type 11 YP_001360246.1 PFAM: regulatory protein TetR; KEGG: mva:Mvan_5917 transcriptional regulator, TetR family YP_001360245.1 PFAM: alpha/beta hydrolase fold; TAP domain protein YP_001360244.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001360243.1 PFAM: thymidylate kinase; major facilitator superfamily MFS_1 YP_001360242.1 PFAM: acyltransferase 3 YP_001360241.1 TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001360240.1 PFAM: methyltransferase small YP_001360239.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001360237.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001360236.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001360234.1 PFAM: TadE family protein YP_001360233.1 PFAM: type II secretion system protein YP_001360231.1 PFAM: type II secretion system protein E YP_001360229.1 PFAM: penicillin-binding protein transpeptidase YP_001360225.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001360223.1 PFAM: CMP/dCMP deaminase zinc-binding YP_001360220.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase YP_001360219.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001360217.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001360216.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001360215.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease YP_001360212.1 PFAM: cyclic nucleotide-binding; ATP-binding region ATPase domain protein YP_001360211.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver; FAD dependent oxidoreductase YP_001360209.1 PFAM: alpha/beta hydrolase fold YP_001360208.1 PFAM: methyltransferase type 11; methyltransferase type 12 YP_001360206.1 PFAM: ABC transporter; SMART: AAA ATPase YP_001360205.1 PFAM: major facilitator superfamily MFS_1 YP_001360204.1 PFAM: GCN5-related N-acetyltransferase YP_001360203.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein YP_001360201.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein YP_001360200.1 PFAM: CBS domain containing protein; protein of unknown function DUF21 YP_001360199.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region YP_001360197.1 PFAM: ABC transporter; SMART: AAA ATPase YP_001360196.1 PFAM: transport system permease protein; ABC transporter YP_001360195.1 PFAM: periplasmic binding protein YP_001360194.1 PFAM: ABC transporter; SMART: AAA ATPase YP_001360193.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3 YP_001360192.1 PFAM: ABC transporter inner membrane protein YP_001360191.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein YP_001360190.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_001360189.1 PFAM: regulatory protein MerR YP_001360188.1 PFAM: aldo/keto reductase YP_001360187.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein YP_001360186.1 PFAM: metallophosphoesterase YP_001360185.1 PFAM: GatB/Yqey domain protein YP_001360183.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PASTA domain containing protein YP_001360182.1 PFAM: transcription factor WhiB YP_001360180.1 PFAM: endoribonuclease L-PSP YP_001360179.1 PFAM: beta-lactamase domain protein YP_001360178.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp YP_001360176.1 TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001360175.1 PFAM: NUDIX hydrolase YP_001360174.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; Colicin V production protein YP_001360173.1 PFAM: Bile acid:sodium symporter YP_001360172.1 PFAM: alpha/beta hydrolase fold YP_001360171.1 PFAM: protein of unknown function DUF1469 YP_001360170.1 PFAM: endonuclease/exonuclease/phosphatase YP_001360169.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_001360168.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator YP_001360167.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_001360166.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein YP_001360165.1 PFAM: ABC transporter inner membrane protein YP_001360164.1 PFAM: ABC transporter inner membrane protein YP_001360163.1 PFAM: extracellular solute-binding protein family 1 YP_001360162.1 PFAM: glycoside hydrolase family 3 domain protein YP_001360160.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2 YP_001360157.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001360156.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001360155.1 PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; KEGG: fal:FRAAL4851 regulatory protein YP_001360154.1 KEGG: rha:RHA1_ro04158 hypothetical protein YP_001360152.1 PFAM: VanW family protein; KEGG: nca:Noca_1161 VanW family protein YP_001360151.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro02418 probable transcriptional regulator YP_001360150.1 KEGG: sma:SAV6106 ABC transporter ATP-binding protein YP_001360149.1 KEGG: sma:SAV6105 hypothetical protein YP_001360148.1 KEGG: bur:Bcep18194_A4401 hypothetical protein YP_001360147.1 PFAM: SCP-like extracellular; KEGG: sco:SCO0550 hypothetical protein YP_001360146.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor YP_001360145.1 PFAM: AP endonuclease 2 domain protein; xylose isomerase domain protein TIM barrel YP_001360144.1 PFAM: oxidoreductase domain protein; oxidoreductase YP_001360143.1 PFAM: oxidoreductase domain protein; oxidoreductase YP_001360142.1 PFAM: protein of unknown function DUF1037 YP_001360141.1 PFAM: ABC transporter inner membrane protein YP_001360140.1 PFAM: ABC transporter inner membrane protein YP_001360139.1 PFAM: extracellular solute-binding protein family 1 YP_001360138.1 PFAM: regulatory protein LacI YP_001360137.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin YP_001360135.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001360133.1 PFAM: CMP/dCMP deaminase zinc-binding YP_001360131.1 PFAM: glycosyl transferase group 1 YP_001360130.1 TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; protein phosphatase 2C domain protein YP_001360129.1 PFAM: regulatory protein TetR YP_001360127.1 PFAM: alcohol dehydrogenase zinc-binding domain protein YP_001360124.1 PFAM: NHL repeat containing protein; fibronectin type III domain protein; cell wall binding repeat 2-containing protein; Ig family protein YP_001360123.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein YP_001360122.1 PFAM: beta-lactamase YP_001360118.1 PFAM: Smr protein/MutS2 YP_001360116.1 PFAM: glycosyl transferase family 39 YP_001360114.1 PFAM: AAA-4 family protein YP_001360113.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; LGFP repeat protein YP_001360111.1 PFAM: cell wall binding repeat 2-containing protein YP_001360110.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein YP_001360108.1 PFAM: PilT protein domain protein YP_001360107.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_001360105.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein YP_001360104.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; MASE1 domain protein; PAS fold-4 domain protein YP_001360103.1 PFAM: OsmC family protein YP_001360101.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; protein phosphatase 2C domain protein YP_001360099.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein YP_001360098.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer YP_001360097.1 PFAM: protein of unknown function UPF0074; hypothetical protein YP_001360096.1 PFAM: protein of unknown function DUF664 YP_001360095.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein YP_001360094.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_001360093.1 PFAM: diacylglycerol kinase catalytic region YP_001360091.1 PFAM: alpha/beta hydrolase fold YP_001360090.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein YP_001360088.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001360087.1 PFAM: response regulator receiver YP_001360086.1 PFAM: glycosyl transferase family 2; response regulator receiver YP_001360085.1 PFAM: Hpt domain protein YP_001360084.1 PFAM: acyltransferase 3 YP_001360082.1 PFAM: glycosyl transferase family 2 YP_001360081.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_001360080.1 PFAM: EAL domain protein YP_001360079.1 PFAM: response regulator receiver YP_001360077.1 PFAM: response regulator receiver YP_001360076.1 PFAM: MCP methyltransferase CheR-type YP_001360075.1 PFAM: CheB methylesterase; response regulator receiver YP_001360074.1 PFAM: nuclear export factor GLE1 YP_001360069.1 PFAM: CheW domain protein YP_001360068.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein YP_001360067.1 PFAM: protein of unknown function ATP binding YP_001360066.1 PFAM: protein of unknown function DUF742 YP_001360065.1 PFAM: Roadblock/LC7 family protein YP_001360064.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_001360062.1 TIGRFAM: quinone oxidoreductase PIG3; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein YP_001360061.1 PFAM: glycoside hydrolase 15-related YP_001360060.1 PFAM: heat shock protein Hsp20 YP_001360059.1 PFAM: aldo/keto reductase YP_001360058.1 PFAM: sugar-binding domain protein YP_001360057.1 PFAM: extracellular solute-binding protein family 1 YP_001360056.1 PFAM: ABC transporter inner membrane protein YP_001360055.1 PFAM: ABC transporter inner membrane protein; KEGG: sma:SAV6355 integral membrane sugar transport protein YP_001360054.1 PFAM: mannitol dehydrogenase domain; mannitol dehydrogenase rossman domain; KEGG: csa:Csal_0643 mannitol dehydrogenase-like protein YP_001360053.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001360052.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pca:Pcar_2333 glycerophosphoryl diester phosphodiesterase-like YP_001360051.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_2948 extracellular solute-binding protein YP_001360050.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_2925 sn-glycerol-3-phosphate-binding protein YP_001360049.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_2946 ABC transporter inner membrane protein YP_001360048.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: fal:FRAAL5723 endonuclease VIII YP_001360047.1 KEGG: sco:SCO2764 lipoprotein YP_001360046.1 PFAM: YibE/F family protein; KEGG: nca:Noca_4623 YibE/F family protein YP_001360045.1 PFAM: major facilitator superfamily MFS_1; KEGG: cdi:DIP0323 ABC transport system membrane protein YP_001360044.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mul:MUL_2616 metal cation-transporting p-type ATPase C CtpC YP_001360043.1 KEGG: msm:MSMEG_6059 hypothetical protein YP_001360042.1 PFAM: cobalamin synthesis CobW domain protein; KEGG: sco:SCO3426 hypothetical protein YP_001360041.1 PFAM: ribosomal protein L28; KEGG: nfa:nfa49750 ribosomal protein L28 YP_001360040.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001360039.1 PFAM: ribosomal protein S14; KEGG: rha:RHA1_ro05615 30S ribosomal protein S14 YP_001360038.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_001360037.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1060 diguanylate cyclase YP_001360036.1 PFAM: aldose 1-epimerase; KEGG: aba:Acid345_0321 aldose 1-epimerase YP_001360034.1 KEGG: art:Arth_3000 phage shock protein C, PspC YP_001360033.1 PFAM: PspC domain protein; KEGG: art:Arth_3000 phage shock protein C, PspC YP_001360032.1 PFAM: ATP-binding region ATPase domain protein; PspC domain protein; KEGG: art:Arth_2999 signal transduction histidine kinase YP_001360031.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sma:SAV3470 two-component system response regulator YP_001360030.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: rha:RHA1_ro02992 probable inositol 2-dehydrogenase YP_001360029.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pac:PPA0832 permease of the major facilitator superfamily YP_001360028.1 PFAM: regulatory protein TetR; KEGG: mpa:MAP1736 hypothetical protein YP_001360027.1 KEGG: rha:RHA1_ro09113 hypothetical protein YP_001360026.1 KEGG: rha:RHA1_ro09114 hypothetical protein YP_001360025.1 KEGG: rha:RHA1_ro09115 hypothetical protein YP_001360024.1 KEGG: xcv:XCV3887 hypothetical protein YP_001360022.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cef:CE2531 lincomycin-resistance protein YP_001360021.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro01698 possible transcriptional regulator, TetR family YP_001360020.1 KEGG: aau:AAur_3404 hypothetical protein YP_001360019.1 PFAM: glycoside hydrolase family 4; KEGG: msm:MSMEG_0502 glucosidase YP_001360018.1 KEGG: rxy:Rxyl_0838 hypothetical protein YP_001360017.1 PFAM: stress protein; SMART: von Willebrand factor type A; KEGG: sco:SCO3939 hypothetical protein YP_001360016.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2026 short chain dehydrogenase YP_001360015.1 PFAM: aldo/keto reductase; KEGG: sma:SAV4117 oxidoreductase YP_001360014.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: mva:Mvan_5447 phosphoesterase, PA-phosphatase related YP_001360013.1 KEGG: ace:Acel_2102 hypothetical protein YP_001360012.1 KEGG: art:Arth_0684 hypothetical protein YP_001360011.1 KEGG: noc:Noc_1844 hypothetical protein YP_001360009.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: art:Arth_0111 Cof-like hydrolase YP_001360008.1 KEGG: sco:SCO0827 hypothetical protein YP_001360007.1 KEGG: sco:SCO0281 hypothetical protein YP_001360006.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mxa:MXAN_0433 hypothetical protein YP_001360005.1 KEGG: art:Arth_3106 hypothetical protein YP_001360004.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: art:Arth_0141 Cof-like hydrolase YP_001360003.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001360002.1 PFAM: diacylglycerol kinase catalytic region; KEGG: lxx:Lxx21980 hypothetical protein YP_001360001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001360000.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: fal:FRAAL4612 hypothetical protein; membrane protein; GGDEF and EAL domains YP_001359999.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: tfu:Tfu_3053 prephenate dehydratase YP_001359998.1 PFAM: transcription factor WhiB; KEGG: fra:Francci3_0634 transcription factor WhiB YP_001359997.1 KEGG: mbb:BCG_2196 integral membrane protein YP_001359996.1 KEGG: tfu:Tfu_0334 hypothetical protein YP_001359995.1 KEGG: bca:BCE_5388 hypothetical protein YP_001359994.1 PFAM: amino acid permease-associated region; KEGG: mkm:Mkms_5270 amino acid permease-associated region YP_001359993.1 PFAM: periplasmic solute binding protein; KEGG: lxx:Lxx25040 ABC transporter, solute binding protein YP_001359992.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lxx:Lxx25025 ABC transporter, ATP-binding protein YP_001359991.1 PFAM: ABC transporter; KEGG: art:Arth_2639 ABC transporter YP_001359989.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001359988.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: fal:FRAAL2435 acyl carrier protein phosphodiesterase 1 (ACP phosphodiesterase 1) YP_001359987.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ace:Acel_2037 anti-sigma regulatory factor, serine/threonine protein kinase YP_001359986.1 PFAM: histidine kinase HAMP region domain protein; CHASE3 domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fra:Francci3_1176 stage II sporulation E YP_001359985.1 PFAM: Oxidoreductase FAD-binding domain protein; KEGG: aba:Acid345_3726 oxidoreductase FAD-binding region YP_001359984.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO0687 probable oxidoreductase YP_001359983.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nca:Noca_1880 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001359982.1 PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein YP_001359981.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001359980.1 PFAM: fatty acid desaturase; KEGG: art:Arth_1495 fatty acid desaturase YP_001359979.1 SMART: GAF domain protein; KEGG: sma:SAV4629 hypothetical protein YP_001359978.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: sma:SAV4628 hypothetical protein YP_001359977.1 PFAM: Rhodanese domain protein; KEGG: sma:SAV7058 hypothetical protein YP_001359976.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: sco:SCO1299 transcriptional regulatory protein YP_001359975.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cgb:cg1612 acetyltransferase YP_001359974.1 PFAM: glycoside hydrolase 15-related; KEGG: rxy:Rxyl_2413 glycoside hydrolase 15-related YP_001359973.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nfa:nfa34370 cold shock protein YP_001359972.1 KEGG: fal:FRAAL1612 hypothetical protein; membrane protein YP_001359971.1 KEGG: reu:Reut_A1022 GCN5-related N-acetyltransferase YP_001359970.1 KEGG: fal:FRAAL0601 conserved hypothetical protein; adenylate cyclase domain YP_001359969.1 PFAM: thiopurine S-methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO0835 methyltransferase YP_001359968.1 KEGG: mmr:Mmar10_1014 hypothetical protein YP_001359967.1 KEGG: ade:Adeh_0244 LigA YP_001359966.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_001359965.1 PFAM: regulatory protein MerR; KEGG: tfu:Tfu_0102 regulatory protein, MerR YP_001359964.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: nca:Noca_3615 NAD-dependent epimerase/dehydratase YP_001359963.1 KEGG: dge:Dgeo_2490 hypothetical protein YP_001359962.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV4394 magnesium or manganese-dependent protein phosphatase YP_001359961.1 PFAM: AzlC family protein; KEGG: art:Arth_0324 AzlC family protein YP_001359960.1 PFAM: branched-chain amino acid transport; KEGG: sco:SCO5764 hypothetical protein YP_001359959.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sma:SAV6643 ion transport protein YP_001359958.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na? antiporter NhaA; sodium/hydrogen exchanger; KEGG: fra:Francci3_2583 Na+/H+ antiporter NhaA YP_001359957.1 PFAM: PfkB domain protein; KEGG: pac:PPA0370 carbohydrate kinase, PfkB family YP_001359956.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: pac:PPA0371 KHG/KDPG aldolase YP_001359955.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO3476 short-chain dehydrogenase YP_001359954.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO3478 dehydrogenase YP_001359953.1 PFAM: regulatory protein IclR; IclR family transcriptional regulator; KEGG: mta:Moth_0417 transcriptional regulator, IclR family YP_001359952.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_001359951.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB2816 C4-dicarboxylate transport system permease large protein YP_001359950.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: cef:CE2240 C4-dicarboxylate permease small protein YP_001359949.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB2818 C4-dicarboxylate transport system C4-dicarboxylate-binding protein YP_001359948.1 KEGG: pat:Patl_2353 hypothetical protein YP_001359947.1 PFAM: camphor resistance CrcB protein; KEGG: aau:AAur_2835 CrcB-like protein YP_001359946.1 PFAM: camphor resistance CrcB protein; KEGG: lxx:Lxx00690 integral membrane protein YP_001359945.1 KEGG: fal:FRAAL1463 hypothetical protein YP_001359944.1 KEGG: fal:FRAAL1464 hypothetical protein YP_001359943.1 PFAM: phosphate transporter; KEGG: cgl:NCgl0445 phosphate/sulphate permease YP_001359942.1 PFAM: protein of unknown function DUF344; KEGG: msm:MSMEG_0891 polyphosphate kinase 2 YP_001359941.1 KEGG: ace:Acel_1925 hypothetical protein YP_001359940.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mlr8380 hypothetical protein YP_001359939.1 PFAM: major facilitator superfamily MFS_1; KEGG: lxx:Lxx14870 sugar transporter YP_001359938.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ade:Adeh_1211 hypothetical protein YP_001359937.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mbb:BCG_0905c pyruvate or indole-3-pyruvate decarboxylase pdc YP_001359936.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3986 transcriptional regulator, AsnC family YP_001359935.1 PFAM: alkaline phosphatase; KEGG: rru:Rru_A1289 alkaline phosphatase YP_001359934.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: tbd:Tbd_1061 diguanylate phosphodiesterase (EAL domain) with GAF sensor YP_001359933.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase YP_001359931.1 PFAM: FAD dependent oxidoreductase; KEGG: rle:pRL120735 D-amino acid oxidase YP_001359930.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1674 oxidoreductase YP_001359929.1 PFAM: aminotransferase class V; KEGG: cya:CYA_0818 isopenicillin N-epimerase YP_001359928.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro06803 superfamily II DNA and RNA helicases YP_001359927.1 PFAM: regulatory protein LuxR; KEGG: rxy:Rxyl_2946 transcriptional regulator, LuxR family YP_001359926.1 KEGG: nca:Noca_0654 hypothetical protein YP_001359925.1 PFAM: glycosyl transferase family 2; KEGG: tfu:Tfu_3054 glycosyltransferase involved in cell wall biogenesis YP_001359924.1 PFAM: GAF domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tfu:Tfu_2140 PAS/protein phosphatase 2C-like YP_001359923.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO3975 regulator YP_001359922.1 PFAM: glycosyl transferase family 2; KEGG: sma:SAV3935 hypothetical protein YP_001359921.1 PFAM: Rhodanese domain protein; KEGG: mva:Mvan_5669 rhodanese domain protein YP_001359920.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: sma:SAV7451 ribose-phosphate pyrophosphokinase YP_001359919.1 KEGG: sma:SAV3915 ATP-dependent DNA helicase YP_001359918.1 KEGG: tfu:Tfu_3059 hypothetical protein YP_001359917.1 KEGG: bxe:Bxe_A3428 hypothetical protein YP_001359916.1 PFAM: cell wall binding repeat 2-containing protein; KEGG: ctc:CTC00504 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase YP_001359915.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Orn/Lys/Arg decarboxylase major region; aminotransferase class-III; Orn/Lys/Arg decarboxylase domain protein; Soluble liver antigen/liver pancreas antigen; KEGG: nfa:nfa6850 Orn/Lys/Arg decarboxylase YP_001359913.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: sma:SAV7289 formamidopyrimidine-DNA glycosylase YP_001359912.1 PFAM: protein of unknown function UPF0016; KEGG: nca:Noca_0167 protein of unknown function UPF0016 YP_001359911.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_4050 serine phosphatase YP_001359910.1 PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_1563 major facilitator superfamily MFS_1 YP_001359909.1 KEGG: fal:FRAAL1607 integral membrane protein YP_001359908.1 KEGG: tfu:Tfu_0356 integral membrane protein YP_001359907.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03923 NADPH dehydrogenase YP_001359906.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: mpa:MAP1328c hypothetical protein YP_001359905.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sco:SCO5840 transcriptional regulator YP_001359904.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mbb:BCG_3721c dipeptide-transport ATP-binding protein ABC transporter DppD YP_001359903.1 PFAM: gamma-glutamyltranspeptidase; KEGG: art:Arth_0896 gamma-glutamyltransferase YP_001359902.1 PFAM: ABC transporter inner membrane protein; KEGG: bbr:BB2519 probable ABC-transport protein, inner membrane component YP_001359901.1 PFAM: ABC transporter inner membrane protein; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component YP_001359900.1 PFAM: extracellular solute-binding protein family 5; KEGG: bja:bll2868 ABC transporter substrate-binding protein YP_001359899.1 PFAM: protein of unknown function DUF1275; KEGG: sco:SCO5946 hypothetical protein YP_001359898.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_001359897.1 PFAM: RNA-binding S4 domain protein; KEGG: sco:SCO1991 probable heat shock protein YP_001359895.1 PFAM: regulatory protein MerR; KEGG: sco:SCO7585 MerR-family transcriptional regulator YP_001359894.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_4582 short-chain dehydrogenase/reductase SDR YP_001359893.1 PFAM: alkaline phosphatase; KEGG: gvi:gll0490 phosphodiesterase/alkaline phosphatase D YP_001359892.1 PFAM: NmrA family protein; KEGG: sma:SAV883 hypothetical protein YP_001359891.1 PFAM: regulatory protein TetR; KEGG: sma:SAV882 TetR-family transcriptional regulator YP_001359889.1 PFAM: aldo/keto reductase; KEGG: dra:DR0249 oxidoreductase YP_001359888.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001359887.1 PFAM: PspC domain protein; KEGG: nca:Noca_0967 PspC domain protein YP_001359886.1 PFAM: SCP-like extracellular; KEGG: ace:Acel_1209 allergen V5/TPX-1 family protein YP_001359885.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdi:DIP0589 hypothetical protein YP_001359884.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_3886 transcriptional regulator, LysR family YP_001359883.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_3467 haloperoxidase YP_001359882.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_0585 transcriptional regulator, TetR family YP_001359881.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: ace:Acel_1274 riboflavin biosynthesis protein RibD YP_001359880.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_001359879.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: art:Arth_2328 hypothetical protein YP_001359878.1 PFAM: protein of unknown function DUF344; KEGG: fal:FRAAL4412 conserved hypothetical protein; P-loop containing nucleotide triphosphate hydrolase domain YP_001359877.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL4021 sigma factor PP2C-like phosphatases YP_001359876.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein YP_001359874.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: nfa:nfa34020 glycosyl hydrolase YP_001359873.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: afm:Afu6g14610 alfa-L-rhamnosidase YP_001359872.1 PFAM: ABC transporter inner membrane protein; KEGG: ret:RHE_PC00037 probable sugar ABC transporter, substrate-binding protein YP_001359871.1 PFAM: ABC transporter inner membrane protein; KEGG: rle:pRL100258 permease component of ABC transporter YP_001359870.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100259 substrate-binding component of ABC transporter YP_001359869.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV7422 LacI-family transcriptional regulator YP_001359868.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO1203 MutT-like protein YP_001359867.1 PFAM: ROK family protein; KEGG: sco:SCO4285 sugar kinase YP_001359866.1 PFAM: CutC family protein; KEGG: bfr:BF3601 Cu2+ homeostasis protein CutC YP_001359865.1 PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II YP_001359864.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_001359863.1 TIGRFAM: methylisocitrate lyase; KEGG: lxx:Lxx01280 phosphonomutase YP_001359862.1 PFAM: MmgE/PrpD family protein; KEGG: art:Arth_1525 2-methylcitrate dehydratase YP_001359861.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_1663 transcriptional regulator, GntR family YP_001359860.1 KEGG: bca:BCE_2783 hypothetical protein YP_001359859.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_4050 serine phosphatase YP_001359858.1 KEGG: bld:BLi03808 N-acetylmuramoyl-L-alanine amidase (major autolysin); RBL00297 YP_001359857.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nfa:nfa16090 hypothetical protein YP_001359855.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fra:Francci3_2472 sigma-24 YP_001359854.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ade:Adeh_0132 diguanylate cyclase (GGDEF domain) YP_001359853.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; protein phosphatase 2C domain protein; KEGG: sco:SCO3679 hypothetical protein YP_001359852.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV3761 hypothetical protein YP_001359851.1 PFAM: glycoside hydrolase 15-related; KEGG: art:Arth_3442 glycoside hydrolase 15-related protein YP_001359849.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_0741 GCN5-related N-acetyltransferase YP_001359848.1 KEGG: rha:RHA1_ro01844 glycerone kinase YP_001359847.1 PFAM: YceI family protein; KEGG: ace:Acel_0530 YceI family protein YP_001359846.1 PFAM: lycopene beta and epsilon cyclase; KEGG: sco:SCO0191 lycopene cyclase YP_001359845.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cjk:jk1527 large-conductance mechanosensitive channel YP_001359843.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rha:RHA1_ro05772 hypothetical protein YP_001359842.1 KEGG: tfu:Tfu_0925 hypothetical protein YP_001359841.1 PFAM: NmrA family protein; KEGG: art:Arth_3950 NmrA family protein YP_001359840.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02017 probable L-amino-acid oxidase YP_001359839.1 PFAM: endoribonuclease L-PSP; KEGG: rha:RHA1_ro02016 hypothetical protein YP_001359838.1 KEGG: rha:RHA1_ro03341 hypothetical protein YP_001359837.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mkm:Mkms_4133 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001359835.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_1494 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001359834.1 PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_1967 ThiJ/PfpI domain protein YP_001359833.1 PFAM: glycoside hydrolase family 43; KEGG: sco:SCO2427 secreted arabinase YP_001359832.1 PFAM: Forkhead-associated protein; KEGG: tfu:Tfu_3060 FHA domain protein YP_001359831.1 PFAM: Forkhead-associated protein; KEGG: sma:SAV4342 hypothetical protein YP_001359830.1 PFAM: stage II sporulation E family protein; protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: ace:Acel_0022 protein serine/threonine phosphatases YP_001359829.1 PFAM: cell cycle protein; KEGG: nca:Noca_0025 cell cycle protein YP_001359828.1 PFAM: penicillin-binding protein transpeptidase; KEGG: ace:Acel_0020 peptidoglycan glycosyltransferase YP_001359827.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sma:SAV4338 serine/threonine protein kinase YP_001359826.1 PFAM: metallophosphoesterase; KEGG: lxx:Lxx23330 hypothetical protein YP_001359825.1 KEGG: afm:Afu2g17000 PT repeat family YP_001359824.1 PFAM: UspA domain protein; KEGG: aau:AAur_0701 universal stress family domain protein YP_001359823.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: art:Arth_1393 protein of unknown function DUF112, transmembrane YP_001359822.1 KEGG: sco:SCO1139 integral membrane protein YP_001359821.1 PFAM: Uncharacterized protein UPF0065; KEGG: dge:Dgeo_0833 uncharacterized protein UPF0065 YP_001359820.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO5829 two-component sensor YP_001359819.1 PFAM: response regulator receiver; KEGG: fal:FRAAL2991 two-component system response regulator YP_001359818.1 PFAM: SpoOM family protein; KEGG: fra:Francci3_2907 SpoOM YP_001359816.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_001359815.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aau:AAur_1094 oxidoreductase, short chain dehydrogenase/reductase family YP_001359814.1 PFAM: Excalibur domain protein; LGFP repeat protein; KEGG: rha:RHA1_ro04060 probable antigen 85 complex protein YP_001359813.1 PFAM: asparaginase/glutaminase; KEGG: rha:RHA1_ro04451 asparaginase YP_001359812.1 PFAM: ABC transporter; KEGG: sma:SAV2097 UvrA-like protein YP_001359809.1 KEGG: ani:AN5649.2 hypothetical protein YP_001359808.1 KEGG: aav:Aave_0081 hypothetical protein YP_001359807.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sco:SCO5531 integral membrane protein YP_001359806.1 PFAM: regulatory protein TetR; KEGG: sco:SCO5532 transcriptional regulator YP_001359805.1 TIGRFAM: metal dependent phophohydrolase; KEGG: rha:RHA1_ro06964 hypothetical protein YP_001359804.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_1293 chemotaxis sensory transducer YP_001359803.1 PFAM: Excalibur domain protein; KEGG: rha:RHA1_ro05216 hypothetical protein YP_001359802.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: rha:RHA1_ro03506 possible excisionase YP_001359801.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001359800.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tfu:Tfu_0349 similar to multisubunit Na+/H+ antiporter MnhC subunit YP_001359799.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: art:Arth_3871 NADH dehydrogenase (quinone) YP_001359798.1 KEGG: msm:MSMEG_0845 multisubunit Na+/H+ antiporter YP_001359797.1 PFAM: multiple resistance and pH regulation protein F; KEGG: art:Arth_3869 hypothetical protein YP_001359796.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_001359795.1 PFAM: LGFP repeat protein; KEGG: nfa:nfa24370 hypothetical protein YP_001359794.1 KEGG: art:Arth_0144 hypothetical protein YP_001359793.1 KEGG: nca:Noca_1574 hypothetical protein YP_001359792.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RSc0510 probable transmembrane protein YP_001359791.1 KEGG: tfu:Tfu_0013 integral membrane protein YP_001359790.1 KEGG: tfu:Tfu_0160 hypothetical protein YP_001359789.1 KEGG: art:Arth_3946 hypothetical protein YP_001359788.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV7156 LacI-family transcriptional regulator YP_001359787.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: art:Arth_0834 inositol 2-dehydrogenase YP_001359786.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_2526 cell envelope-related transcriptional attenuator YP_001359785.1 KEGG: mva:Mvan_2826 conserved hypothetical protein YP_001359784.1 KEGG: tfu:Tfu_2382 hypothetical protein YP_001359783.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0016 sortase family protein YP_001359782.1 PFAM: protein of unknown function DUF881; KEGG: ace:Acel_0015 protein of unknown function DUF881 YP_001359781.1 PFAM: protein of unknown function UPF0233; KEGG: aau:AAur_0024 hypothetical UPF0233 membrane protein YP_001359780.1 KEGG: fal:FRAAL1793 hypothetical protein YP_001359779.1 PFAM: Rhomboid family protein; KEGG: aau:AAur_0017 rhomboid family membrane protein YP_001359778.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: nca:Noca_0017 peptidylprolyl isomerase YP_001359777.1 KEGG: tcr:506763.260 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH CHEMOTAXIS_TRANSDUC_2 YP_001359775.1 PFAM: glycosyl transferase group 1; KEGG: art:Arth_3205 glycosyl transferase, group 1 YP_001359774.1 PFAM: O-antigen polymerase; KEGG: syw:SYNW0284 possible bicarbonate transporter, ICT family YP_001359773.1 PFAM: glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0244 glycosyltransferase YP_001359772.1 PFAM: glycosyl transferase group 1; KEGG: reh:H16_A2887 glycosyltransferase, probably involved in lipopolysaccharide biosynthesis YP_001359771.1 PFAM: virulence factor MVIN family protein; KEGG: dvu:DVU3063 integral membrane protein MviN YP_001359770.1 KEGG: rpc:RPC_4204 glycosyl transferase, group 1 YP_001359769.1 PFAM: sugar transferase; KEGG: rha:RHA1_ro05742 sugar transferase YP_001359768.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05453 probable protein-tyrosine kinase YP_001359767.1 SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: sma:SAV2909 low molecular weight protein tyrosine phosphatase YP_001359766.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: rha:RHA1_ro11077 probable AAA ATPase YP_001359765.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO3056 hypothetical protein YP_001359764.1 KEGG: sma:SAV4323 hypothetical protein YP_001359763.1 negatively supercoils closed circular double-stranded DNA YP_001359762.1 KEGG: lxx:Lxx00060 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001359761.1 PFAM: protein of unknown function DUF721; KEGG: art:Arth_0005 protein of unknown function DUF721 YP_001359760.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sco:SCO3876 DNA replication protein YP_001359759.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001359758.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; KEGG: aau:AAur_0002 DNA polymerase III, beta subunit YP_001359757.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: fal:FRAAL0002 chromosomal replication initiator protein YP_001364236.1 PFAM: ribosomal protein L34; KEGG: fra:Francci3_4548 ribosomal protein L34 YP_001364235.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sma:SAV4314 RNase P component YP_001364234.1 PFAM: protein of unknown function DUF37; KEGG: csa:Csal_1884 protein of unknown function DUF37 YP_001364233.1 PFAM: hypothetical protein; KEGG: aau:AAur_4207 60Kd inner membrane family protein YP_001364232.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: nca:Noca_4696 single-stranded nucleic acid binding R3H domain protein YP_001364231.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: nca:Noca_4695 methyltransferase GidB YP_001364230.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: sma:SAV4309 partitioning or sporulation protein YP_001364229.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: art:Arth_4165 ParB-like partition proteins YP_001364228.1 KEGG: sma:SAV4307 hypothetical protein YP_001364227.1 TIGRFAM: thioredoxin; PFAM: thioredoxin; KEGG: sma:SAV4306 thioredoxin YP_001364226.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: aau:AAur_pTC20059 thioredoxin-disulfide reductase YP_001364225.1 KEGG: nca:Noca_4686 hypothetical protein YP_001364224.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sma:SAV4303 RNA polymerase ECF-subfamily sigma factor YP_001364223.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: tfu:Tfu_3105 hypothetical protein YP_001364222.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ace:Acel_2036 hypothetical protein YP_001364221.1 PFAM: NLP/P60 protein; KEGG: ace:Acel_2144 NLP/P60 protein YP_001364220.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: art:Arth_4159 integral membrane protein MviN YP_001364219.1 KEGG: sma:SAV4300 hypothetical protein YP_001364218.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_4158 NUDIX hydrolase YP_001364217.1 TIGRFAM: metal dependent phophohydrolase; tRNA adenylyltransferase; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sma:SAV4299 RNA nucleotidyltransferase YP_001364216.1 KEGG: aau:AAur_1975 hypothetical protein YP_001364215.1 PFAM: type IV pilus assembly PilZ YP_001364214.1 KEGG: fal:FRAAL3165 hypothetical protein YP_001364213.1 PFAM: ChaB family protein; KEGG: msm:MSMEG_1802 ChaB protein YP_001364212.1 PFAM: major facilitator superfamily MFS_1; KEGG: msm:MSMEG_6225 proton antiporter efflux pump YP_001364211.1 PFAM: regulatory protein TetR; KEGG: art:Arth_0763 transcriptional regulator, TetR family YP_001364210.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO1144 ABC transporter ATP-binding protein YP_001364209.1 PFAM: regulatory protein MarR; KEGG: sco:SCO1145 MarR-family regulator YP_001364208.1 PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV3928 magnesium or manganese-dependent protein phosphatase YP_001364207.1 KEGG: sma:SAV2725 transcriptional regulator YP_001364206.1 PFAM: proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase YP_001364205.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: msm:MSMEG_5119 1-pyrroline-5-carboxylate dehydrogenase YP_001364204.1 PFAM: protein of unknown function DUF1469; KEGG: msm:MSMEG_0697 integral membrane protein YP_001364203.1 KEGG: sma:SAV6346 hypothetical protein YP_001364202.1 PFAM: luciferase family protein; KEGG: bld:BLi00644 hypothetical protein YP_001364201.1 PFAM: GAF domain protein; stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO7759 DNA-binding protein YP_001364200.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: mkm:Mkms_0253 response regulator receiver and ANTAR domain protein YP_001364199.1 KEGG: rha:RHA1_ro06302 hypothetical protein YP_001364198.1 KEGG: mkm:Mkms_2275 conserved hypothetical protein YP_001364197.1 KEGG: mkm:Mkms_2276 conserved hypothetical protein YP_001364196.1 KEGG: mkm:Mkms_2277 conserved hypothetical protein YP_001364195.1 KEGG: rha:RHA1_ro01917 hypothetical protein YP_001364194.1 KEGG: mkm:Mkms_2279 conserved hypothetical protein YP_001364193.1 PFAM: protein of unknown function DUF322; KEGG: mkm:Mkms_2280 protein of unknown function DUF322 YP_001364192.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nfa:nfa23350 sigma factor YP_001364190.1 KEGG: aau:AAur_0672 hypothetical protein YP_001364189.1 PFAM: regulatory protein MarR; KEGG: fra:Francci3_2500 transcriptional regulator, MarR family YP_001364188.1 PFAM: GAF domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001364187.1 KEGG: art:Arth_3938 hypothetical protein YP_001364186.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: reu:Reut_A0019 PAS:GGDEF YP_001364185.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: azo:azo1357 EAL/GGDEF/PAS/PAC-domain containing signalling protein YP_001364184.1 KEGG: nca:Noca_3724 phosphodiesterase YP_001364183.1 PFAM: Radical SAM domain protein; KEGG: bha:BH2808 spore photoproduct lyase YP_001364182.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro02951 probable oxidoreductase, Zn-binding YP_001364181.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: rha:RHA1_ro02950 probable transcriptional regulator, TetR family YP_001364180.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL1468 conserved hypothetical protein; glyoxalase/bleomycin resistance domains YP_001364179.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: fal:FRAAL1467 TetR family transcriptional regulatory protein YP_001364178.1 PFAM: acetamidase/formamidase; KEGG: cef:CE2517 hypothetical protein YP_001364177.1 PFAM: regulatory protein IclR; IclR family transcriptional regulator; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family YP_001364176.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001364175.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001364174.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_001364173.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001364172.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001364171.1 TIGRFAM: methyltransferase FkbM family; KEGG: mva:Mvan_1263 methyltransferase FkbM family YP_001364170.1 PFAM: glycosyl transferase family 2; KEGG: cef:CE1470 hypothetical protein YP_001364169.1 KEGG: cef:CE1470 hypothetical protein YP_001364168.1 KEGG: cef:CE1471 hypothetical protein YP_001364167.1 PFAM: glycosyl transferase group 1; KEGG: rha:RHA1_ro00092 probable glycosyltransferase YP_001364166.1 KEGG: rha:RHA1_ro00094 possible sugar transferase YP_001364165.1 KEGG: rha:RHA1_ro00093 hypothetical protein YP_001364164.1 KEGG: rha:RHA1_ro00091 hypothetical protein YP_001364163.1 KEGG: art:Arth_0563 hypothetical protein YP_001364162.1 PFAM: thymidylate synthase; KEGG: nfa:nfa50220 thymidylate synthase YP_001364161.1 PFAM: dihydrofolate reductase region; KEGG: lxx:Lxx09920 dihydrofolate reductase YP_001364160.1 KEGG: cel:C34D4.11 glycine Rich Secreted protein YP_001364159.1 PFAM: DSBA oxidoreductase; KEGG: aau:AAur_0689 DsbA-like thioredoxin domain protein YP_001364158.1 PFAM: stress protein; KEGG: sma:SAV5804 tellurium resistance protein YP_001364157.1 KEGG: sco:SCO0296 transcriptional regulator YP_001364156.1 PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2282 major facilitator superfamily MFS_1 YP_001364155.1 KEGG: rha:RHA1_ro01831 probable DNA polymerase III YP_001364154.1 PFAM: amino acid permease-associated region; KEGG: mle:ML1305 probable L-asparagine permease YP_001364153.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01536 multidrug resistance transporter, MFS superfamily YP_001364152.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: rha:RHA1_ro05118 probable neprilysin YP_001364151.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dge:Dgeo_1614 diguanylate cyclase with PAS/PAC sensor YP_001364150.1 KEGG: sus:Acid_7132 hypothetical protein YP_001364148.1 KEGG: sma:SAV3788 ADP-ribosylglycohydrolase YP_001364147.1 PFAM: glutamine synthetase catalytic region; KEGG: mva:Mvan_4030 glutamine synthetase, catalytic region YP_001364146.1 PFAM: protein of unknown function DUF808; KEGG: mkm:Mkms_2712 protein of unknown function DUF808 YP_001364145.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: fal:FRAAL3340 aliphatic sulfonates transport ATP-binding protein SsuB YP_001364144.1 SMART: extracellular solute-binding protein family 3; KEGG: ppu:PP_3229 periplasmic aliphatic sulfonate-binding protein YP_001364143.1 PFAM: ABC transporter inner membrane protein; KEGG: gbe:GbCGDNIH1_0539 alkanesulfonates transport system permease protein YP_001364142.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: rha:RHA1_ro01831 probable DNA polymerase III YP_001364140.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fra:Francci3_1984 short-chain dehydrogenase/reductase SDR YP_001364139.1 PFAM: NERD domain protein; KEGG: art:Arth_0132 NERD domain protein YP_001364138.1 SMART: HNH nuclease; KEGG: msm:MSMEG_1275 HNH nuclease YP_001364137.1 PFAM: DNA mismatch endonuclease vsr; KEGG: rha:RHA1_ro04148 probable very short patch repair protein YP_001364136.1 PFAM: Amidase; KEGG: mxa:MXAN_3566 amidase YP_001364135.1 KEGG: rha:RHA1_ro02493 hypothetical protein YP_001364134.1 PFAM: Appr-1-p processing domain protein; KEGG: gvi:glr3371 hypothetical protein YP_001364132.1 KEGG: ade:Adeh_3875 hypothetical protein YP_001364131.1 PFAM: UvrD/REP helicase; KEGG: sru:SRU_1806 probable ATP-dependent DNA helicase YP_001364130.1 KEGG: sus:Acid_0029 ATP-dependent nuclease subunit B-like protein YP_001364129.1 PFAM: Dual specificity protein phosphatase; ADP-ribosylation/Crystallin J1; KEGG: sco:SCO0086 ribosylglycohydrolase (secreted protein) YP_001364128.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO3752 ABC transporter ATP-binding protein YP_001364127.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO3753 integral membrane YP_001364126.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_0504 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_001364125.1 PFAM: ABC transporter inner membrane protein; KEGG: rfr:Rfer_0952 ABC transporter inner membrane protein YP_001364124.1 PFAM: ABC transporter inner membrane protein; KEGG: rfr:Rfer_0953 ABC transporter inner membrane protein YP_001364123.1 PFAM: extracellular solute-binding protein family 1; KEGG: dge:Dgeo_2821 extracellular solute-binding protein, family 1 YP_001364122.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_0554 GntR-like protein YP_001364121.1 PFAM: Appr-1-p processing domain protein; KEGG: gvi:glr3371 hypothetical protein YP_001364120.1 KEGG: fal:FRAAL0210 hypothetical protein YP_001364119.1 PFAM: PilT protein domain protein; KEGG: fra:Francci3_4109 PilT protein-like YP_001364117.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sal:Sala_2642 type III restriction enzyme, res subunit YP_001364116.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sal:Sala_2641 helicase-like protein YP_001364115.1 KEGG: sal:Sala_2639 hypothetical protein YP_001364113.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sal:Sala_2637 helicase-like protein YP_001364112.1 KEGG: sal:Sala_2636 hypothetical protein YP_001364111.1 KEGG: sal:Sala_2635 hypothetical protein YP_001364110.1 PFAM: protein of unknown function DUF165; KEGG: dge:Dgeo_0372 protein of unknown function DUF165 YP_001364109.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: sgl:SG0515 6-pyruvoyl tetrahydrobiopterin synthase YP_001364108.1 KEGG: hypothetical protein YP_001364107.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: mag:amb4021 predicted PP-loop superfamily ATPase YP_001364106.1 KEGG: cps:CPS_2934 hypothetical protein YP_001364105.1 KEGG: sal:Sala_2648 hypothetical protein YP_001364104.1 KEGG: sal:Sala_2647 hypothetical protein YP_001364103.1 KEGG: sal:Sala_2648 hypothetical protein YP_001364101.1 PFAM: Resolvase domain; KEGG: nca:Noca_1088 resolvase, N-terminal domain YP_001364093.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: art:Arth_1035 4-hydroxythreonine-4-phosphate dehydrogenase YP_001364092.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: art:Arth_1034 transcriptional regulator, DeoR family YP_001364091.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; KEGG: azo:azo1490 conserved hypothetical signaling protein YP_001364090.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_3625 alpha/beta hydrolase fold YP_001364088.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_1158 ABC-type multidrug transport system ATPase and permease components YP_001364087.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_1157 ABC-type multidrug transport system ATPase and permease components YP_001364086.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: nfa:nfa41080 dehydrogenase YP_001364085.1 KEGG: nfa:nfa41090 hypothetical protein YP_001364083.1 KEGG: rpc:RPC_2737 protein of unknown function UPF0157 YP_001364082.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV1845 LysR-family transcriptional regulator YP_001364081.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV3894 integral membrane efflux protein YP_001364080.1 KEGG: mav:MAV_3777 chromosome segregation protein SMC YP_001364078.1 PFAM: adenosine/AMP deaminase; KEGG: lme:LEUM_0809 adenosine deaminase YP_001364077.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: tfu:Tfu_1487 lipase/esterase YP_001364076.1 PFAM: aldo/keto reductase; KEGG: nfa:nfa6720 oxidoreductase YP_001364075.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV3223 magnesium or manganese-dependent protein phosphatase YP_001364074.1 PFAM: GAF domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tfu:Tfu_1271 PAS:protein phosphatase 2C-like:GAF YP_001364073.1 PFAM: peptidase S58 DmpA; KEGG: art:Arth_2945 peptidase S58, DmpA YP_001364072.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_001364071.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: tfu:Tfu_0340 trimethylamine-N-oxide reductase (cytochrome C) YP_001364070.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_3258 GCN5-related N-acetyltransferase YP_001364069.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001364068.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ace:Acel_2135 glycosyl transferase, family 51 YP_001364067.1 KEGG: sco:SCO3902 integral membrane protein YP_001364066.1 PFAM: ribosomal protein S6; KEGG: ace:Acel_2133 ribosomal protein S6 YP_001364065.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: aau:AAur_4164 single-strand binding protein YP_001364064.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001364063.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001364062.1 PFAM: UvrB/UvrC protein; ATPase AAA; Clp domain protein; ATPase activities AAA_5; ATPase AAA; SMART: AAA ATPase; KEGG: sma:SAV4697 ATP-dependent Clp protease YP_001364061.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: nca:Noca_4658 MATE efflux family protein YP_001364060.1 unwinds double stranded DNA; these Mycobacterial enzymes appear to contain inteins YP_001364059.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sma:SAV1293 methytransferase YP_001364058.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: xcv:XCV0667 sensor protein YP_001364057.1 PFAM: luciferase family protein; KEGG: art:Arth_3897 luciferase family protein YP_001364056.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pfl:PFL_1540 aquaporin Z YP_001364055.1 KEGG: art:Arth_3022 hypothetical protein YP_001364054.1 PFAM: protein of unknown function DUF81; KEGG: sma:SAV1602 integral membrane protein YP_001364053.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sma:SAV6985 DNA damage inducible protein YP_001364052.1 PFAM: HhH-GPD family protein; KEGG: rha:RHA1_ro02327 probable DNA-3-methyladenine glycosylase II YP_001364051.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3141 short-chain dehydrogenase/reductase SDR YP_001364050.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: fal:FRAAL6490 hypothetical protein YP_001364049.1 PFAM: Silent information regulator protein Sir2; KEGG: fra:Francci3_2791 silent information regulator protein Sir2 YP_001364048.1 PFAM: regulatory protein TetR; KEGG: sco:SCO7651 TetR-family transcriptional regulator YP_001364047.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_4037 GCN5-related N-acetyltransferase YP_001364046.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_001364045.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL4318 TetR family transcriptional regulator YP_001364044.1 KEGG: mxa:MXAN_6701 hypothetical protein YP_001364043.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_001364042.1 KEGG: nca:Noca_4331 membrane protein YP_001364041.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_0292 transcriptional regulator, TetR family YP_001364040.1 KEGG: aau:AAur_0291 integral membrane protein YP_001364039.1 PFAM: alpha/beta hydrolase fold; KEGG: sus:Acid_3202 alpha/beta hydrolase fold YP_001364038.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: art:Arth_4444 cation diffusion facilitator family transporter YP_001364037.1 PFAM: regulatory protein ArsR; transcriptional regulator TrmB; hypothetical protein; KEGG: nfa:nfa26300 transcriptional regulator YP_001364036.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: nfa:nfa33850 lipase YP_001364035.1 KEGG: rme:Rmet_4616 hypothetical protein YP_001364034.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_001364033.1 KEGG: deh:cbdb_A1073 hypothetical protein YP_001364032.1 TIGRFAM: ATP-dependent DNA helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nca:Noca_0133 DEAD/DEAH box helicase domain protein YP_001364031.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein; KEGG: fal:FRAAL3862 thiosulfate sulfurtransferase (partial match) YP_001364030.1 KEGG: nca:Noca_0473 hypothetical protein YP_001364029.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: lxx:Lxx21360 cardiolipin synthase YP_001364028.1 KEGG: mbb:BCG_0831c transmembrane protein YP_001364027.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_4205 7TM domain sensor diguanylate cyclase YP_001364026.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: nfa:nfa7580 hypothetical protein YP_001364025.1 PFAM: sodium/hydrogen exchanger; KEGG: art:Arth_3572 Na+/H+ antiporter YP_001364024.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV5335 oxidoreductase transmembrane protein YP_001364023.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001364022.1 KEGG: art:Arth_3236 hypothetical protein YP_001364021.1 KEGG: aau:AAur_3460 hypothetical protein YP_001364020.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: nfa:nfa29540 hypothetical protein YP_001364019.1 KEGG: nca:Noca_0293 hypothetical protein YP_001364018.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: sma:SAV4261 histidinol-phosphate aminotransferase YP_001364017.1 PFAM: helix-turn-helix domain protein; KEGG: mmr:Mmar10_0501 transcriptional regulator, XRE family YP_001364016.1 KEGG: pfl:PFL_4030 hypothetical protein YP_001364015.1 PFAM: dehydrogenase E1 component; KEGG: nca:Noca_4509 pyruvate dehydrogenase (acetyl-transferring) YP_001364014.1 PFAM: transketolase; Transketolase domain protein; KEGG: ace:Acel_0032 transketolase, central region YP_001364013.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sco:SCO3815 dihydrolipoamide acyltransferase component YP_001364012.1 KEGG: art:Arth_1418 hypothetical protein YP_001364009.1 PFAM: HpcH/HpaI aldolase; KEGG: aau:AAur_3005 citrate lyase beta subunit YP_001364008.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_001364007.1 PFAM: Ferritin Dps family protein; KEGG: msm:MSMEG_3242 starvation-inducible DNA-binding protein or fine tangled pili major subunit YP_001364006.1 PFAM: ferric-uptake regulator; KEGG: fal:FRAAL3168 ferric uptake regulation protein (ferric uptake regulator) YP_001364005.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0353 multidrug resistance protein YP_001364004.1 PFAM: regulatory protein MarR; KEGG: mul:MUL_0657 transcriptional regulator YP_001364003.1 KEGG: sco:SCO0542 hypothetical regulatory protein YP_001364002.1 PFAM: copper resistance D domain protein; KEGG: lxx:Lxx23680 copper resistance protein D YP_001364001.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_001364000.1 KEGG: jan:Jann_1080 metallophosphoesterase YP_001363999.1 PFAM: DNA-directed DNA polymerase; KEGG: fal:FRAAL3779 DNA polymerase I YP_001363998.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_3602 chemotaxis sensory transducer YP_001363997.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mav:MAV_1440 glyoxalase/bleomycin resistance protein/dioxygenase YP_001363996.1 PFAM: aldo/keto reductase; KEGG: xfa:XF1729 phenylacetaldehyde dehydrogenase YP_001363995.1 PFAM: luciferase family protein; KEGG: fal:FRAAL1418 conserved hypothetical protein; bacterial luciferase domain YP_001363994.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001363993.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_3555 hydrolase YP_001363992.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rxy:Rxyl_2834 NCS1 nucleoside transporter family YP_001363991.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: msm:MSMEG_0817 LysR-family protein transcriptional regulator YP_001363990.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tfu:Tfu_1845 regulatory protein, LuxR:response regulator receiver YP_001363989.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO6253 two-component sensor kinase YP_001363988.1 PFAM: GAF domain protein; chemotaxis sensory transducer; KEGG: bja:blr2548 chemotaxis protein YP_001363987.1 PFAM: helix-turn-helix domain protein; KEGG: rha:RHA1_ro06756 possible transcriptional regulator YP_001363986.1 PFAM: peptidase S14 ClpP; KEGG: sco:SCO7280 ATP-dependent Clp protease proteolytic subunit 2 YP_001363985.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001363984.1 KEGG: sco:SCO1196 secreted protein YP_001363983.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV7490 transmembrane efflux protein YP_001363982.1 PFAM: regulatory protein TetR; KEGG: mva:Mvan_1060 transcriptional regulator, TetR family YP_001363981.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_3056 short-chain dehydrogenase/reductase SDR YP_001363980.1 KEGG: aau:AAur_3741 NHL repeat protein YP_001363979.1 KEGG: mkm:Mkms_4538 conserved hypothetical protein YP_001363978.1 PFAM: regulatory protein MarR; KEGG: fra:Francci3_2500 transcriptional regulator, MarR family YP_001363977.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001363976.1 PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa4770 transporter YP_001363975.1 PFAM: regulatory protein MarR; KEGG: nfa:nfa4780 transcriptional regulator YP_001363974.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tfu:Tfu_2303 cation transporter YP_001363973.1 PFAM: cation transporter; KEGG: nfa:nfa20990 cation transporter YP_001363972.1 PFAM: ankyrin; KEGG: sco:SCO1414 ankyrin-like protein YP_001363971.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: ace:Acel_0828 diguanylate phosphodiesterase YP_001363970.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001363968.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 nucleotidase YP_001363967.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_0263 NAD-dependent epimerase/dehydratase YP_001363966.1 PFAM: CsbD family protein; KEGG: art:Arth_3578 CsbD family protein YP_001363965.1 KEGG: fra:Francci3_1317 hypothetical protein YP_001363964.1 KEGG: lxx:Lxx14240 ABC transporter, permease protein YP_001363963.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lxx:Lxx14230 ABC transporter, ATP-binding protein YP_001363962.1 PFAM: cobalt transport protein; KEGG: art:Arth_3864 cobalt transport protein YP_001363961.1 KEGG: fal:FRAAL2348 hypothetical protein YP_001363960.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: art:Arth_3808 chaperone protein DnaK YP_001363959.1 PFAM: GrpE protein; KEGG: fra:Francci3_4353 GrpE protein YP_001363958.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: art:Arth_3806 chaperone DnaJ domain protein YP_001363957.1 PFAM: regulatory protein MerR; KEGG: art:Arth_3805 transcriptional regulator, MerR family YP_001363956.1 KEGG: tfu:Tfu_2315 secreted protein YP_001363955.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: nfa:nfa11810 hypothetical protein YP_001363954.1 PFAM: aminoglycoside phosphotransferase; KEGG: vpa:VPA0250 hypothetical protein YP_001363953.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase YP_001363952.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rha:RHA1_ro03477 probable transcriptional regulator, GntR family YP_001363951.1 KEGG: mkm:Mkms_5414 conserved hypothetical protein YP_001363950.1 PFAM: regulatory protein MarR; KEGG: hypothetical protein YP_001363948.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: dge:Dgeo_1614 diguanylate cyclase with PAS/PAC sensor YP_001363947.1 PFAM: beta-lactamase domain protein; KEGG: art:Arth_2340 ribonuclease Z YP_001363946.1 PFAM: Abortive infection protein; KEGG: sco:SCO6138 transmembrane protein YP_001363945.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO6139 sensor kinase YP_001363944.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sco:SCO6140 two-component system response regulator YP_001363943.1 PFAM: ATPase AAA; Clp domain protein; ATPase activities AAA_5; ATPase AAA; SMART: AAA ATPase; KEGG: aau:AAur_3531 ClpA/ClpB family protein YP_001363942.1 KEGG: fra:Francci3_2938 hypothetical protein YP_001363941.1 KEGG: nca:Noca_1890 hypothetical protein YP_001363940.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: fal:FRAAL3312 hypothetical protein YP_001363939.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mpa:MAP3973c hypothetical protein YP_001363938.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rha:RHA1_ro03016 possible transcriptional regulator, GntR family YP_001363937.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro03017 metabolite transporter, MFS superfamily YP_001363936.1 KEGG: art:Arth_3539 hypothetical protein YP_001363935.1 PFAM: cupin; KEGG: nfa:nfa20880 hypothetical protein YP_001363934.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: msm:MSMEG_1316 peptide chain release factor 3 YP_001363933.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpa:MAP0878c hypothetical protein YP_001363932.1 PFAM: mannitol dehydrogenase domain; mannitol dehydrogenase rossman domain; KEGG: mpa:MAP0879c hypothetical protein YP_001363931.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL0626 short-chain dehydrogenase/reductase YP_001363930.1 PFAM: mannitol dehydrogenase domain; mannitol dehydrogenase rossman domain; KEGG: mpa:MAP0879c hypothetical protein YP_001363929.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: fal:FRAAL2350 AraC-family transcriptional regulator YP_001363928.1 KEGG: fal:FRAAL2351 hypothetical protein YP_001363927.1 KEGG: lxx:Lxx20760 hypothetical protein YP_001363926.1 KEGG: fal:FRAAL0740 hypothetical protein YP_001363925.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rha:RHA1_ro02178 probable DNA-(apurinic or apyrimidinic site) lyase YP_001363924.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sma:SAV6651 GntR-family transcriptional regulator YP_001363923.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_1067 short-chain dehydrogenase/reductase SDR YP_001363922.1 PFAM: aldo/keto reductase; KEGG: sma:SAV7284 oxidoreductase YP_001363921.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO0356 probable oxidoreductase YP_001363920.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: aau:AAur_3801 mandelate racemase/muconate lactonizing enzyme YP_001363919.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO2850 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_001363918.1 KEGG: nar:Saro_2411 twin-arginine translocation pathway signal YP_001363917.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_3032 ABC-type sugar transport system, permease component YP_001363916.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_3031 ABC-type sugar transport system, permease component YP_001363915.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_4081 extracellular solute-binding protein YP_001363914.1 PFAM: peptidase S15; Acetyl xylan esterase; KEGG: ace:Acel_2045 acetyl xylan esterase YP_001363913.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001363911.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2191 methyltransferase type 11 YP_001363910.1 PFAM: protein of unknown function UPF0029; KEGG: nca:Noca_0960 protein of unknown function UPF0029 YP_001363909.1 PFAM: hypothetical protein; KEGG: fal:FRAAL6654 integral membrane protein (partial match) YP_001363908.1 KEGG: sma:SAV5368 hypothetical protein YP_001363907.1 PFAM: hypothetical protein; KEGG: sco:SCO3411 possible membrane protein YP_001363906.1 PFAM: ankyrin; KEGG: sco:SCO1414 ankyrin-like protein YP_001363905.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; TOBE domain protein; KEGG: mkm:Mkms_0055 DNA binding domain, excisionase family YP_001363904.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3748 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001363903.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: msm:MSMEG_2015 molybdate ABC transporter, permease protein YP_001363902.1 PFAM: ABC transporter; TOBE domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_2014 molybdenum import ATP-binding protein ModC YP_001363901.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cjk:jk0429 ABC-type uncharacterized transport system ATPase component YP_001363900.1 KEGG: fal:FRAAL3624 ABC transporter YP_001363899.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase YP_001363898.1 PFAM: oxidoreductase domain protein; KEGG: sco:SCO0735 oxidoreductase YP_001363897.1 PFAM: peptidoglycan-binding LysM; transglycosylase; KEGG: cef:CE0894 hypothetical protein YP_001363896.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: nca:Noca_2001 phospholipid/glycerol acyltransferase YP_001363895.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: nca:Noca_1998 HAD-superfamily subfamily IB hydrolase, TIGR01490 YP_001363894.1 PFAM: carbon starvation protein CstA; KEGG: fra:Francci3_2468 carbon starvation protein CstA YP_001363892.1 PFAM: protein of unknown function DUF1025; KEGG: aau:AAur_0413 domain of unknown function (DUF1025) YP_001363891.1 KEGG: tfu:Tfu_2133 hypothetical protein YP_001363890.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mva:Mvan_2196 HAD-superfamily hydrolase, subfamily IIA YP_001363889.1 TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: nfa:nfa52030 deoxyribose-phosphate aldolase YP_001363888.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001363887.1 PFAM: FAD linked oxidase domain protein; KEGG: msm:MSMEG_6382 oxidoreductase, FAD-binding YP_001363886.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase YP_001363885.1 PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001363884.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro05268 probable hydroxypyruvate isomerase YP_001363883.1 PFAM: oxidoreductase domain protein; oxidoreductase; homoserine dehydrogenase NAD-binding; KEGG: rha:RHA1_ro05267 possible oxidoreductase YP_001363882.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro01362 transcriptional regulator, LacI family YP_001363881.1 PFAM: DNA primase small subunit; KEGG: art:Arth_3426 hypothetical protein YP_001363880.1 PFAM: acetamidase/formamidase; KEGG: amidase-related protein YP_001363879.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rha:RHA1_ro01895 ABC amino acid transporter, ATP-binding component YP_001363878.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter inner membrane protein; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit YP_001363877.1 PFAM: extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro01893 ABC amino acid transporter, periplasmic binding protein YP_001363876.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rle:RL4378 LacI family transcriptional regulator YP_001363875.1 PFAM: protein of unknown function DUF1680; KEGG: tma:TM0280 hypothetical protein YP_001363874.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100263 substrate-binding component of ABC transporter YP_001363873.1 PFAM: ABC transporter inner membrane protein; KEGG: rle:RL4376 transmembrane component of ABC transporter YP_001363872.1 PFAM: ABC transporter inner membrane protein; KEGG: rle:pRL100265 permease component of ABC transporter YP_001363871.1 PFAM: regulatory protein GntR HTH; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: art:Arth_0620 transcriptional regulator, GntR family YP_001363870.1 PFAM: protein of unknown function DUF161; KEGG: sma:SAV6929 hypothetical protein YP_001363869.1 PFAM: YCII-related; KEGG: aau:AAur_1545 YCII-related domain protein YP_001363867.1 KEGG: hypothetical protein YP_001363866.1 KEGG: nfa:nfa45010 hypothetical protein YP_001363865.1 PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_3289 alpha/beta hydrolase fold YP_001363864.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa21680 ABC transporter ATP-binding protein YP_001363863.1 PFAM: protein of unknown function DUF990; KEGG: nfa:nfa21690 ABC-2 type transport system permease protein YP_001363862.1 KEGG: aau:AAur_3567 membrane protein (DUF990 family) YP_001363861.1 KEGG: nca:Noca_3739 hypothetical protein YP_001363860.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV2447 DNA hydrolase YP_001363859.1 PFAM: band 7 protein; KEGG: sma:SAV2321 hypothetical protein YP_001363858.1 KEGG: aau:AAur_3480 hypothetical protein YP_001363857.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: fal:FRAAL1591 oxidoreductase YP_001363855.1 PFAM: FAD dependent oxidoreductase; KEGG: fal:FRAAL4450 monomeric sarcosine oxidase (MSOX) YP_001363854.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001363853.1 PFAM: luciferase family protein; KEGG: mpa:MAP0371 hypothetical protein YP_001363852.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rxy:Rxyl_2045 peptidase C56, PfpI YP_001363851.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001363850.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001363849.1 PFAM: ATP-binding region ATPase domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase YP_001363848.1 KEGG: fal:FRAAL6659 hypothetical protein YP_001363847.1 KEGG: fra:Francci3_4414 NAD/FAD-dependent oxidoreductase-like YP_001363846.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001363845.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mkm:Mkms_2116 GCN5-related N-acetyltransferase YP_001363844.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mva:Mvan_2546 alpha amylase, catalytic region YP_001363843.1 PFAM: MMPL domain protein; Cna B domain protein; KEGG: sco:SCO7536 integral membrane protein YP_001363842.1 PFAM: regulatory protein TetR; KEGG: mva:Mvan_1613 transcriptional regulator, TetR family YP_001363841.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: cgb:cg3037 cardiolipin synthetase YP_001363840.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: ret:RHE_CH02345 hypothetical protein YP_001363839.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001363838.1 PFAM: cutinase; KEGG: mul:MUL_0856 cutinase precursor, Cut3 YP_001363837.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: msm:MSMEG_2472 AsnC-family protein transcriptional regulator YP_001363836.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro01812 possible ferredoxin YP_001363835.1 TIGRFAM: Ku family containing protein; PFAM: Ku domain protein; KEGG: nca:Noca_1234 Ku domain protein YP_001363834.1 KEGG: tfu:Tfu_0741 hypothetical protein YP_001363833.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sco:SCO1623 hypothetical protein YP_001363832.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: aau:AAur_3762 iron-chelator utilization protein YP_001363831.1 KEGG: rxy:Rxyl_0756 hypothetical protein YP_001363830.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS1934 acetyltransferase, GNAT family YP_001363829.1 KEGG: art:Arth_0625 hypothetical protein YP_001363828.1 KEGG: rxy:Rxyl_2373 membrane protein-like protein YP_001363827.1 TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; KEGG: sma:SAV4149 phosphoribosylglycinamide synthetase YP_001363826.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: nca:Noca_4337 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001363825.1 KEGG: mkm:Mkms_2285 conserved hypothetical protein YP_001363824.1 KEGG: sma:SAV3246 hypothetical protein YP_001363823.1 PFAM: OmpA/MotB domain protein; KEGG: fal:FRAAL0082 hypothetical protein; lipoprotein YP_001363822.1 KEGG: sma:SAV4747 hypothetical protein YP_001363821.1 KEGG: csa:Csal_1793 LrgA YP_001363820.1 PFAM: LrgB family protein; KEGG: pen:PSEEN4835 hypothetical protein YP_001363819.1 PFAM: extracellular solute-binding protein family 1; KEGG: jan:Jann_3701 extracellular solute-binding protein, family 1 YP_001363818.1 PFAM: ABC transporter inner membrane protein; KEGG: bam:Bamb_4157 ABC transporter inner membrane protein YP_001363817.1 PFAM: ABC transporter inner membrane protein; KEGG: jan:Jann_4088 ABC transporter inner membrane protein YP_001363816.1 PFAM: Amidase; KEGG: mxa:MXAN_3566 amidase YP_001363815.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4265 transport integral membrane protein YP_001363814.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL3956 TetR family transcriptional regulatory protein YP_001363813.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: msm:MSMEG_2660 transcriptional regulator, AsnC family protein YP_001363812.1 TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: sco:SCO1773 L-alanine dehydrogenase YP_001363811.1 ATP-dependent carboxylate-amine ligase YP_001363810.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: art:Arth_0665 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_001363809.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_001363808.1 KEGG: pac:PPA0727 Zn-dependent hydrolase YP_001363807.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV7504 magnesium or manganese-dependent protein phosphatase YP_001363806.1 PFAM: purine catabolism PurC domain protein; KEGG: nca:Noca_4625 purine catabolism PurC domain protein YP_001363805.1 PFAM: aminotransferase class-III; KEGG: sco:SCO5655 aminotransferase YP_001363804.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001363803.1 KEGG: tfu:Tfu_1922 solute-binding protein YP_001363802.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_001363801.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: nca:Noca_2310 phenazine biosynthesis protein PhzF family YP_001363800.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rha:RHA1_ro10432 probable transcriptional regulator, LysR family YP_001363799.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: aha:AHA_3590 aspartate racemase YP_001363798.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: art:Arth_1068 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001363797.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; KEGG: art:Arth_0542 phosphoribosylformylglycinamidine synthase, PurS YP_001363796.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001363795.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001363792.1 KEGG: hypothetical protein YP_001363791.1 KEGG: sma:SAV2403 hypothetical protein YP_001363790.1 PFAM: aminoglycoside phosphotransferase; KEGG: mlo:mll1809 hypothetical protein YP_001363789.1 PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein YP_001363788.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_1368 sugar MFS transporter YP_001363787.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: ace:Acel_1804 transcriptional regulator, GntR family YP_001363786.1 PFAM: PfkB domain protein; KEGG: msm:MSMEG_4661 sugar kinase, ribokinase family protein YP_001363785.1 KEGG: rha:RHA1_ro01351 hypothetical protein YP_001363784.1 PFAM: myo-inositol catabolism IolB domain protein; KEGG: rha:RHA1_ro01352 myo-inositol catabolism IolB protein YP_001363783.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rha:RHA1_ro01353 probable acetolactate synthase YP_001363782.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro01354 possible myo-inositol catabolism protein YP_001363781.1 KEGG: mva:Mvan_4011 periplasmic binding protein/LacI transcriptional regulator YP_001363780.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro01346 ABC sugar transporter, permease component YP_001363779.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV7153 sugar ABC transporter ATP-binding protein YP_001363778.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: msm:MSMEG_4666 myo-inositol 2-dehydrogenase YP_001363777.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: ace:Acel_1810 xylose isomerase domain protein TIM barrel YP_001363776.1 KEGG: sco:SCO7136 hypothetical protein YP_001363775.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO6239 sigma factor YP_001363774.1 KEGG: sye:Syncc9902_0245 probable deoxyribodipyrimidine photolyase YP_001363773.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: rha:RHA1_ro02931 aminomethyltransferase YP_001363772.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: art:Arth_3700 L-serine dehydratase 1 YP_001363771.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV7235 LysR-family transcriptional regulator YP_001363770.1 PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_3232 major facilitator superfamily MFS_1 YP_001363769.1 KEGG: art:Arth_3409 hypothetical protein YP_001363768.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001363767.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: art:Arth_3736 phosphoribosylformylglycinamidine cyclo-ligase YP_001363766.1 KEGG: aau:AAur_3529 hypothetical protein YP_001363765.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ace:Acel_2065 xylulokinase YP_001363764.1 PFAM: GGDEF domain containing protein; KEGG: sma:SAV3944 hypothetical protein YP_001363763.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO0789 histidinol phosphatase YP_001363762.1 PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL5600 DNA-binding protein YP_001363761.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL5599 short chain oxidoreductase YP_001363760.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: sma:SAV7190 hypothetical protein YP_001363759.1 KEGG: mva:Mvan_4766 conserved hypothetical protein YP_001363758.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: sco:SCO6423 lipoate-protein ligase YP_001363757.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein YP_001363756.1 PFAM: regulatory protein TetR; KEGG: art:Arth_2143 transcriptional regulator, TetR family YP_001363755.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001363754.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001363753.1 PFAM: MaoC domain protein dehydratase; KEGG: nca:Noca_2849 MaoC domain protein dehydratase YP_001363751.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro00829 short chain dehydrogenase YP_001363750.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pac:PPA0140 ketoacyl reductase YP_001363748.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO3750 two-component sensor histidine kinase YP_001363747.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO2281 two-component system response-regulator YP_001363746.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cdi:DIP2287 integral membrane transport protein YP_001363744.1 PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro04271 ABC sugar transporter, permease component YP_001363743.1 PFAM: ABC transporter inner membrane protein; KEGG: rha:RHA1_ro03452 ABC sugar transporter, permease component YP_001363742.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0413 extracellular solute-binding protein, family 1 YP_001363741.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro04275 transcriptional regulator, LacI family YP_001363740.1 PFAM: lysine exporter protein (LYSE/YGGA); KEGG: rha:RHA1_ro03597 lysine exporter protein YP_001363739.1 PFAM: regulatory protein LysR; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein YP_001363738.1 PFAM: protein of unknown function DUF427; KEGG: mkm:Mkms_3034 protein of unknown function DUF427 YP_001363737.1 PFAM: sodium/hydrogen exchanger; KEGG: aau:AAur_0586 sodium/hydrogen exchanger family protein YP_001363736.1 KEGG: mkm:Mkms_2390 transglycosylase associated protein YP_001363735.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: art:Arth_2032 SUA5/YciO/YrdC/YwlC family protein YP_001363734.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV7211 acetyltransferase YP_001363733.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aau:AAur_4068 NAD dependent epimerase/dehydratase family protein YP_001363731.1 KEGG: sco:SCO4534 hypothetical protein YP_001363730.1 KEGG: sco:SCO4536 hypothetical protein YP_001363727.1 PFAM: Dak kinase; Dak phosphatase; KEGG: rha:RHA1_ro01844 glycerone kinase YP_001363726.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001363725.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001363724.1 KEGG: ace:Acel_0382 hypothetical protein YP_001363723.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: nfa:nfa49870 phosphoribosylglycinamide formyltransferase YP_001363722.1 involved in de novo purine biosynthesis YP_001363721.1 KEGG: tfu:Tfu_2569 integral membrane protein YP_001363720.1 KEGG: sma:SAV1208 monooxygenase YP_001363719.1 KEGG: ace:Acel_0087 hypothetical protein YP_001363718.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate YP_001363717.1 KEGG: tfu:Tfu_2556 hypothetical protein YP_001363716.1 PFAM: carboxyl transferase; KEGG: sco:SCO4926 propionyl-CoA carboxylase complex B subunit YP_001363715.1 Converts isocitrate to alpha ketoglutarate YP_001363714.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: sma:SAV2036 metal-transport protein YP_001363713.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sco:SCO2590 glycosyltransferase YP_001363712.1 KEGG: mth:MTH369 UDP-N-acetylglucosamine pyrophosphorylase related protein YP_001363711.1 KEGG: dra:DR0590 hypothetical protein YP_001363710.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: aau:AAur_1226 formyltetrahydrofolate deformylase YP_001363709.1 TIGRFAM: isochorismate synthase; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: bld:BLi03901 isochorismate synthase; RBL00457 YP_001363708.1 PFAM: glycine hydroxymethyltransferase; KEGG: aau:AAur_1227 serine hydroxymethyltransferase YP_001363707.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001363706.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: aau:AAur_1236 exodeoxyribonuclease III YP_001363705.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rxy:Rxyl_1765 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_001363704.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO3956 ABC transporter ATP-binding protein YP_001363703.1 KEGG: sma:SAV4249 integral membrane protein YP_001363702.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nca:Noca_4447 ABC transporter YP_001363701.1 KEGG: sco:SCO3959 possible integral membrane protein YP_001363700.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rha:RHA1_ro05490 galactokinase YP_001363699.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: rha:RHA1_ro05491 UDP-glucose--hexose-1-phosphate uridylyltransferase YP_001363698.1 PFAM: regulatory protein DeoR; iron dependent repressor; hypothetical protein; regulatory protein DeoR; KEGG: sco:SCO1026 transcriptional regulatory protein YP_001363697.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein; KEGG: aau:AAur_3310 beta-galactosidase YP_001363696.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: sma:SAV3417 tryptophanyl-tRNA synthetase YP_001363695.1 PFAM: phosphoesterase HXTX; KEGG: ace:Acel_0391 2',5' RNA ligase YP_001363694.1 PFAM: ribonuclease BN; KEGG: fal:FRAAL1172 integral membrane protein; ribonuclease domain YP_001363693.1 KEGG: fra:Francci3_0675 hypothetical protein YP_001363692.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV554 LacI-family transcriptional regulator YP_001363691.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV5256 sugar binding secreted protein YP_001363690.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO2796 cellobiose transport permease YP_001363689.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO7557 sugar transport integral membrane protein YP_001363688.1 PFAM: glycoside hydrolase family 1; KEGG: sco:SCO7558 beta-glucosidase YP_001363687.1 KEGG: nca:Noca_3950 secreted protein YP_001363686.1 TIGRFAM: formaldehyde dehydrogenase glutathione-independent; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_0480 glutathione-independent formaldehyde dehydrogenase YP_001363685.1 KEGG: cyb:CYB_1854 clavaminate synthase YP_001363684.1 KEGG: ani:AN3480.2 hypothetical protein YP_001363683.1 PFAM: ABC transporter; KEGG: gsu:GSU1088 ubiquinone biosynthesis protein AarF YP_001363682.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001363681.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001363680.1 KEGG: art:Arth_1130 succinate dehydrogenase membrane subunit YP_001363679.1 TIGRFAM: succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: art:Arth_1131 succinate dehydrogenase, cytochrome b subunit YP_001363678.1 PFAM: Nucleotidyl transferase; KEGG: aau:AAur_1248 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001363677.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; KEGG: nca:Noca_3542 amidohydrolase YP_001363676.1 PFAM: basic membrane lipoprotein; KEGG: art:Arth_1137 basic membrane lipoprotein YP_001363675.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_1138 ABC transporter YP_001363674.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1139 inner-membrane translocator YP_001363673.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1140 inner-membrane translocator YP_001363672.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sco:SCO4889 cytidine deaminase YP_001363671.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_001363670.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001363668.1 PFAM: hypothetical protein; KEGG: art:Arth_3047 hypothetical protein YP_001363667.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: fra:Francci3_0108 twin-arginine translocation pathway signal YP_001363666.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3549 major facilitator superfamily (MFS) transporter YP_001363665.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_1309 transcriptional regulator, LysR family YP_001363664.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV1992 hypothetical protein YP_001363663.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_1500 GCN5-related N-acetyltransferase YP_001363662.1 catalyzes the formation of inosine from adenosine YP_001363661.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: sma:SAV2760 DeoR-family transcriptional regulator YP_001363660.1 KEGG: fal:FRAAL5554 hypothetical protein YP_001363659.1 PFAM: GTP-binding protein HSR1-related; GTPase EngC; KEGG: nfa:nfa2160 hypothetical protein YP_001363658.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO0059 zinc-binding oxidoreductase YP_001363657.1 PFAM: regulatory protein MarR; KEGG: mkm:Mkms_1172 transcriptional regulator, MarR family YP_001363656.1 KEGG: sco:SCO4912 aldehyde dehydrogenase YP_001363655.1 PFAM: aldehyde dehydrogenase; KEGG: nca:Noca_3529 betaine-aldehyde dehydrogenase YP_001363654.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO6145 hypothetical protein YP_001363653.1 KEGG: msm:MSMEG_1188 hypothetical protein YP_001363652.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: aau:AAur_1400 phosphomannomutase YP_001363651.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro06423 CobW protein YP_001363650.1 TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa710 ABC transporter ATP-binding protein YP_001363649.1 PFAM: ABC transporter; KEGG: nfa:nfa720 ABC transporter membrane protein YP_001363648.1 KEGG: sco:SCO4221 hypothetical protein YP_001363647.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleotide phosphorylase; PFAM: purine phosphorylase family 2; KEGG: nca:Noca_3521 purine nucleotide phosphorylase YP_001363646.1 KEGG: sma:SAV3341 hypothetical protein YP_001363645.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity YP_001363643.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sma:SAV5746 two-component system sensor kinase YP_001363642.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV4878 two-component system response regulator YP_001363640.1 KEGG: dsy:DSY4438 hypothetical protein YP_001363639.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sma:SAV3337 acyl-CoA carboxylase, alpha subunit YP_001363638.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: nca:Noca_3504 maf protein YP_001363637.1 PFAM: protein of unknown function DUF885; KEGG: aau:AAur_1416 bacterial protein of unknown function (DUF885) YP_001363636.1 PFAM: periplasmic binding protein; KEGG: rha:RHA1_ro06845 ABC Fe(3+) transporter, substrate binding component YP_001363635.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: sco:SCO4927 biotin apo-protein ligase YP_001363634.1 PFAM: GtrA family protein; KEGG: ace:Acel_0404 GtrA family protein YP_001363632.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: nca:Noca_3490 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_001363631.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: tfu:Tfu_2546 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001363630.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_2073 proline iminopeptidase YP_001363629.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sco:SCO1824 secreted subtilisin-like protease YP_001363628.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: msm:MSMEG_6421 transcriptional regulator YP_001363627.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: aau:AAur_3170 UDP-glucose 6-dehydrogenase YP_001363626.1 PFAM: cell wall binding repeat 2-containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2-containing protein YP_001363625.1 KEGG: mbb:BCG_3690 hypothetical protein YP_001363624.1 PFAM: glycosyl transferase family 2; KEGG: cef:CE0335 glycosyl transferase YP_001363623.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aeh:Mlg_0122 ABC transporter YP_001363622.1 PFAM: carbohydrate kinase FGGY; KEGG: gka:GK1941 gluconokinase YP_001363621.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pde:Pden_2931 gluconate transporter YP_001363620.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mkm:Mkms_5416 GntR domain protein YP_001363619.1 PFAM: glycosyl transferase group 1; KEGG: gka:GK3157 hypothetical protein YP_001363618.1 KEGG: mbb:BCG_3841 transmembrane protein alanine and leucine rich YP_001363617.1 PFAM: glycosyl transferase family 2; KEGG: aau:AAur_2603 glycosyl transferase, group 2 family domain protein YP_001363616.1 PFAM: acyltransferase 3; KEGG: mbb:BCG_0560 membrane acyltransferase YP_001363615.1 PFAM: UDP-galactopyranose mutase; KEGG: aau:AAur_2676 UDP-galactopyranose mutase YP_001363614.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2693 glycosyl transferase, family 2 YP_001363613.1 PFAM: ABC transporter; KEGG: aau:AAur_2674 O-antigen export system permease protein YP_001363612.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_2673 O-antigen export system, ATP-binding protein YP_001363611.1 KEGG: rha:RHA1_ro00154 hypothetical protein YP_001363610.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cef:CE2713 hypothetical protein YP_001363609.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_001363608.1 PFAM: GtrA family protein; KEGG: nca:Noca_1597 GtrA family protein YP_001363607.1 KEGG: mle:ML1504 probable conserved membrane protein YP_001363606.1 TIGRFAM: SpoIID/LytB domain; PFAM: LGFP repeat protein; stage II sporulation D domain protein; KEGG: ace:Acel_0423 SpoIID/LytB domain YP_001363605.1 PFAM: LGFP repeat protein; KEGG: nfa:nfa24370 hypothetical protein YP_001363604.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; LGFP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: mav:MAV_0206 N-acetylmuramoyl-L-alanine amidase YP_001363603.1 PFAM: protein of unknown function DUF1501; KEGG: nca:Noca_2722 protein of unknown function DUF1501 YP_001363602.1 PFAM: protein of unknown function DUF1800; KEGG: nca:Noca_2721 hypothetical protein YP_001363601.1 KEGG: sma:SAV5089 hypothetical protein YP_001363600.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpa:MAP0234c oxidoreductase, short-chain dehydrogenase/reductase family YP_001363599.1 PFAM: auxin efflux carrier; KEGG: rha:RHA1_ro05610 hypothetical protein YP_001363598.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bad:BAD_0391 UDP-glucose 4-epimerase YP_001363597.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase, type I YP_001363596.1 PFAM: ammonia monooxygenase; KEGG: mva:Mvan_1609 ammonia monooxygenase YP_001363595.1 KEGG: art:Arth_1191 hypothetical protein YP_001363594.1 KEGG: rxy:Rxyl_1179 hypothetical protein YP_001363593.1 PFAM: glycosyl transferase family 2; KEGG: fra:Francci3_0730 glycosyl transferase, family 2 YP_001363592.1 PFAM: glycosyl transferase group 1; methyltransferase type 11; KEGG: tfu:Tfu_2522 glycosyl transferase YP_001363591.1 KEGG: ace:Acel_0439 hypothetical protein YP_001363590.1 PFAM: extracellular solute-binding protein family 5; KEGG: mkm:Mkms_3453 extracellular solute-binding protein, family 5 YP_001363589.1 PFAM: ABC transporter inner membrane protein; KEGG: mkm:Mkms_3454 ABC transporter inner membrane protein YP_001363588.1 PFAM: ABC transporter inner membrane protein; KEGG: mva:Mvan_3775 ABC transporter inner membrane protein YP_001363587.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ret:RHE_PB00035 probable oligopeptide ABC transporter, ATP-binding protein YP_001363586.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: reh:H16_B0716 ABC-type transporter, ATPase component: PepT family YP_001363584.1 KEGG: mva:Mvan_4530 hypothetical protein YP_001363583.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV4923 LysR-family transcriptional regulator YP_001363582.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ade:Adeh_2203 protein of unknown function DUF6, transmembrane YP_001363581.1 KEGG: nca:Noca_2841 hypothetical protein YP_001363580.1 PFAM: cyclase; KEGG: fal:FRAAL6390 hypothetical protein YP_001363579.1 TIGRFAM: F420-dependent oxidoreductase, PFAM: protein of unknown function DUF129; KEGG: sco:SCO3037 oxidoreductase YP_001363578.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) YP_001363577.1 PFAM: transcription factor WhiB; KEGG: mva:Mvan_1734 transcription factor WhiB YP_001363575.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: nfa:nfa49650 histidine kinase YP_001363574.1 PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV2695 hypothetical protein YP_001363573.1 KEGG: rha:RHA1_ro02080 hypothetical protein YP_001363572.1 PFAM: protein of unknown function ATP binding; KEGG: sma:SAV2182 ATP/GTP-binding protein YP_001363571.1 KEGG: ace:Acel_0462 hypothetical protein YP_001363570.1 KEGG: sma:SAV5046 hypothetical protein YP_001363569.1 KEGG: ace:Acel_0464 hypothetical protein YP_001363568.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO3028 phosphomannomutase YP_001363566.1 KEGG: ace:Acel_0467 sugar isomerase (SIS) YP_001363565.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001363564.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV3511 secreted protein YP_001363562.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: lxx:Lxx02210 glycogen debranching enzyme YP_001363561.1 PFAM: RDD domain containing protein; KEGG: nca:Noca_3913 RDD domain containing protein YP_001363560.1 PFAM: protein of unknown function UPF0157; KEGG: nca:Noca_4958 protein of unknown function UPF0157 YP_001363559.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ace:Acel_1489 peptidase S9, prolyl oligopeptidase active site domain protein YP_001363558.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL0421 regulatory protein YP_001363557.1 KEGG: sco:SCO0713 lipase (secreted protein) YP_001363556.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: nca:Noca_3912 integral membrane protein YP_001363555.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: rba:RB5871 cell division protein FtsH homolog YP_001363554.1 PFAM: beta-lactamase; KEGG: sco:SCO7561 esterase YP_001363553.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: fal:FRAAL4164 ABC transporter transmembrane YP_001363552.1 PFAM: ABC transporter transmembrane protein; ABC transporter; KEGG: rha:RHA1_ro04710 bifunctional ABC transporter YP_001363551.1 PFAM: protein of unknown function DUF72; KEGG: art:Arth_3443 protein of unknown function DUF72 YP_001363550.1 PFAM: glycoside hydrolase family 9; carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sco:SCO0765 secreted endoglucanase YP_001363549.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_3638 ABC transporter, transmembrane region YP_001363548.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_3639 ABC transporter YP_001363547.1 PFAM: protein of unknown function DUF58; KEGG: nca:Noca_3911 protein of unknown function DUF58 YP_001363546.1 PFAM: ATPase activities AAA_3; ATPase activities AAA_5; KEGG: sma:SAV5058 regulatory protein YP_001363545.1 KEGG: mul:MUL_4274 hypothetical protein YP_001363544.1 KEGG: art:Arth_2714 integral membrane protein YP_001363543.1 KEGG: sco:SCO3015 integral membrane protein YP_001363542.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO3013 two-component system response regulator YP_001363541.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sma:SAV5064 two-component system sensor kinase YP_001363540.1 KEGG: art:Arth_2710 hypothetical protein YP_001363539.1 KEGG: mpa:MAP3356c hypothetical protein YP_001363538.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: fra:Francci3_0764 sigma 54 modulation protein/ribosomal protein S30EA YP_001363537.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: sco:SCO3008 two-component system response regulator YP_001363536.1 PFAM: protein of unknown function DUF1006; KEGG: tfu:Tfu_0254 hypothetical protein YP_001363535.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ace:Acel_1434 diguanylate cyclase/phosphodiesterase with GAF sensor YP_001363534.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: art:Arth_2706 preprotein translocase, SecA subunit YP_001363533.1 KEGG: ace:Acel_1758 hypothetical protein YP_001363532.1 KEGG: art:Arth_2704 hypothetical protein YP_001363531.1 KEGG: aau:AAur_2687 hypothetical protein YP_001363530.1 KEGG: fra:Francci3_0771 transcriptional regulator YP_001363529.1 KEGG: art:Arth_2701 hypothetical protein YP_001363528.1 KEGG: fal:FRAAL1312 hypothetical protein YP_001363527.1 KEGG: aau:AAur_1649 hypothetical protein YP_001363526.1 KEGG: sco:SCO3001 hypothetical protein YP_001363525.1 KEGG: aau:AAur_1354 hypothetical protein YP_001363524.1 PFAM: NAD-glutamate dehydrogenase; KEGG: sma:SAV5075 NAD-glutamate dehydrogenase YP_001363523.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: sma:SAV3017 two-component system sensor kinase YP_001363522.1 PFAM: transcription factor WhiB; KEGG: aau:AAur_2682 transcription factor, WhiB family YP_001363521.1 KEGG: art:Arth_2696 integral membrane protein YP_001363520.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_0564 RNA polymerase, sigma 28 subunit YP_001363519.1 KEGG: sma:SAV3012 anti-sigma factor YP_001363518.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0561 acetyltransferase YP_001363517.1 PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: ace:Acel_1741 FHA domain containing protein YP_001363516.1 PFAM: type II secretion system protein E; KEGG: fra:Francci3_0779 type II secretion system protein E YP_001363515.1 PFAM: type II secretion system protein; KEGG: art:Arth_2672 type II secretion system protein YP_001363514.1 PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein YP_001363513.1 KEGG: fra:Francci3_0782 hypothetical protein YP_001363512.1 PFAM: TadE family protein; KEGG: aau:AAur_2659 hypothetical protein YP_001363511.1 KEGG: aau:AAur_2658 hypothetical protein YP_001363510.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rxy:Rxyl_3000 short-chain dehydrogenase/reductase SDR YP_001363509.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sma:SAV5102 chain release factor 2 YP_001363508.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_2478 ATPase YP_001363507.1 PFAM: protein of unknown function DUF214; KEGG: art:Arth_2664 protein of unknown function DUF214 YP_001363506.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: art:Arth_2662 SsrA-binding protein YP_001363505.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1277 ATP-binding protein of ABC transporter system YP_001363504.1 KEGG: blo:BL1278 hypothetical protein with unknown or transport function YP_001363503.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eba:ebA2924 hypothetical protein YP_001363502.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psp:PSPPH_1370 xenobiotic reductase YP_001363501.1 PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 transcriptional regulator YP_001363500.1 KEGG: art:Arth_2589 hypothetical protein YP_001363499.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: AAA ATPase; DEAD-like helicases; KEGG: mul:MUL_2038 conserved hypothetical alanine and arginine rich protein YP_001363498.1 KEGG: chu:CHU_2500 hypothetical protein YP_001363497.1 PFAM: Tellurite resistance TerB; KEGG: rha:RHA1_ro01775 tellurium resistance protein YP_001363496.1 PFAM: RDD domain containing protein; KEGG: pac:PPA1684 hypothetical protein, RDD family YP_001363495.1 PFAM: isochorismatase hydrolase; KEGG: tfu:Tfu_2374 pyrazinamidase / nicotinamidase YP_001363494.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: mkm:Mkms_3928 nicotinate phosphoribosyltransferase YP_001363493.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001363492.1 KEGG: nca:Noca_1308 hypothetical protein YP_001363491.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001363490.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001363489.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sco:SCO2902 HAM1 protein YP_001363488.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rha:RHA1_ro01563 probable sufite oxidase YP_001363487.1 PFAM: beta-Ig-H3/fasciclin; KEGG: aau:AAur_0475 fasciclin domain protein YP_001363486.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_4535 sigma-70 region 2 domain protein YP_001363485.1 KEGG: fal:FRAAL3631 hypothetical protein YP_001363484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: art:Arth_2546 redoxin domain protein YP_001363482.1 PFAM: chaperonin Cpn10; KEGG: sco:SCO2899 GroES-family molecular chaperone YP_001363481.1 PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein YP_001363480.1 PFAM: endoribonuclease L-PSP; KEGG: mva:Mvan_0291 endoribonuclease L-PSP YP_001363478.1 KEGG: rha:RHA1_ro02436 hypothetical protein YP_001363477.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: msm:MSMEG_2797 LysR-family protein transcriptional regulator YP_001363476.1 PFAM: periplasmic solute binding protein; KEGG: nca:Noca_1937 periplasmic solute binding protein YP_001363475.1 KEGG: art:Arth_4108 secreted protein YP_001363474.1 TIGRFAM: trehalose synthase; KEGG: mkm:Mkms_0356 trehalose synthase YP_001363473.1 SMART: regulatory protein LacI; KEGG: rha:RHA1_ro01365 probable transcriptional regulator YP_001363472.1 PFAM: protein of unknown function DUF161; KEGG: nca:Noca_0415 protein of unknown function DUF161 YP_001363471.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_0970 transcriptional regulator, AsnC family YP_001363470.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_001363469.1 PFAM: GAF domain protein; ANTAR domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: aau:AAur_pTC20242 ANTAR domain protein YP_001363468.1 KEGG: sco:SCO4412 regulatory protein YP_001363467.1 KEGG: ace:Acel_1718 secreted protein YP_001363466.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: nfa:nfa34060 transcriptional regulator YP_001363465.1 PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: nfa:nfa38090 transcriptional regulator YP_001363464.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: sme:SMc00038 hypothetical protein YP_001363463.1 KEGG: tfu:Tfu_1754 hypothetical protein YP_001363462.1 PFAM: uncharacterised conserved protein UCP028846; KEGG: sco:SCO0061 hypothetical protein YP_001363461.1 PFAM: ROK family protein; KEGG: nca:Noca_4485 ROK family protein YP_001363460.1 PFAM: glycoside hydrolase family 20; KEGG: sth:STH304 N-acetyl-beta-hexosaminidase YP_001363459.1 PFAM: ABC transporter inner membrane protein; KEGG: sma:SAV3020 sugar transporter inner membrane protein YP_001363458.1 PFAM: ABC transporter inner membrane protein; KEGG: sco:SCO5233 sugar transporter integral membrane protein YP_001363457.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO0531 sugar transporter sugar binding protein YP_001363456.1 PFAM: ROK family protein; regulatory protein Crp; KEGG: nca:Noca_4488 ROK family protein YP_001363455.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO6569 secreted solute binding protein YP_001363454.1 PFAM: inner-membrane translocator; KEGG: sma:SAV1827 ABC transporter integral membrane protein YP_001363453.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO6567 ABC transporter ATP binding protein YP_001363452.1 PFAM: luciferase family protein; KEGG: sco:SCO5024 oxidoreductase YP_001363451.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4462 integral membrane protein YP_001363450.1 TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; KEGG: mpt:Mpe_A2850 tRNA (guanine-N(7)-)-methyltransferase YP_001363449.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: art:Arth_0574 xylose isomerase domain protein TIM barrel YP_001363448.1 PFAM: oxidoreductase domain protein; oxidoreductase; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_0717 NADH-dependent dehydrogenase YP_001363447.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro11178 hypothetical protein YP_001363446.1 PFAM: protein of unknown function DUF202; KEGG: msm:MSMEG_0174 inner membrane protein YP_001363444.1 KEGG: art:Arth_2808 hypothetical protein YP_001363443.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_001363442.1 KEGG: sma:SAV4116 hypothetical protein YP_001363441.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_001363440.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sco:SCO0906 hypothetical protein YP_001363439.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: msm:MSMEG_4928 methylated-DNA--protein-cysteine methyltransferase YP_001363438.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bad:BAD_0390 low molecular weight protein-tyrosine-phosphatase YP_001363437.1 KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A YP_001363436.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na?? symporter; KEGG: nfa:nfa45040 transporter YP_001363435.1 KEGG: nfa:nfa45030 hypothetical protein YP_001363434.1 KEGG: afm:Afu2g17000 PT repeat family YP_001363433.1 KEGG: rso:RSc2082 lipase transmembrane protein YP_001363432.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cjk:jk1884 ABC-type enterochelin transport system ATPase component YP_001363431.1 PFAM: transport system permease protein; KEGG: cgb:cg0927 ABC-type cobalamin/Fe3+-siderophores transport system, permease component YP_001363430.1 PFAM: transport system permease protein; KEGG: cef:CE0882 iron ABC transporter permease protein YP_001363429.1 PFAM: periplasmic binding protein; KEGG: cef:CE0881 iron transport protein YP_001363427.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: hydroxyethylthiazole kinase; protein of unknown function UPF0031; KEGG: xcb:XC_3173 hypothetical protein YP_001363426.1 PFAM: phosphoglycerate mutase; KEGG: xac:XAC1174 hypothetical protein YP_001363425.1 PFAM: histidine kinase HAMP region domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL1878 hypothetical protein; signal peptide YP_001363424.1 KEGG: aau:AAur_2856 hypothetical protein YP_001363423.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: tfu:Tfu_0604 phosphodiesterase YP_001363422.1 PFAM: SAF domain protein; KEGG: ace:Acel_0157 hypothetical protein YP_001363421.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sco:SCO3187 hypothetical protein YP_001363420.1 KEGG: sth:STH163 hypothetical protein YP_001363419.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001363418.1 PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_2416 FAD dependent oxidoreductase YP_001363417.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: fal:FRAAL6398 ligase (partial match) YP_001363416.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sco:SCO3182 UTP-glucose-1-phosphate uridylyltransferase YP_001363415.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: nca:Noca_0791 molybdenum cofactor synthesis domain YP_001363414.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ace:Acel_0168 molybdenum cofactor biosynthesis protein C YP_001363413.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: sma:SAV3670 molybdopterin biosynthesis protein YP_001363412.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0377 ribosomal-protein-alanine N-acetyltransferase YP_001363411.1 KEGG: nca:Noca_0795 hypothetical protein YP_001363410.1 KEGG: mkm:Mkms_3172 polysaccharide pyruvyl transferase YP_001363409.1 PFAM: glycosyl transferase group 1; KEGG: sth:STH1101 glycosyl transferase YP_001363408.1 PFAM: sugar transferase; KEGG: ace:Acel_1939 undecaprenyl-phosphate galactose phosphotransferase YP_001363407.1 PFAM: polysaccharide biosynthesis protein; KEGG: msm:MSMEG_5968 polysaccharide biosynthesis protein YP_001363406.1 PFAM: glycosyl transferase group 1; KEGG: xac:XAC2578 GumI protein YP_001363405.1 PFAM: glycosyl transferase family 2; KEGG: mkm:Mkms_3171 glycosyl transferase, family 2 YP_001363401.1 KEGG: gsu:GSU1952 hypothetical protein YP_001363400.1 KEGG: art:Arth_4126 O-antigen polymerase YP_001363399.1 KEGG: nca:Noca_4185 lipopolysaccharide biosynthesis YP_001363398.1 PFAM: glycosyl transferase family 2; KEGG: nha:Nham_3045 glycosyl transferase, family 2 YP_001363397.1 PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_7448 glycosyl transferase, group 2 family protein YP_001363396.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rle:RL3644 polysaccharide acetyltransferase protein YP_001363395.1 PFAM: glycosyltransferase 28 domain; KEGG: msm:MSMEG_5981 glycosyl transferase YP_001363394.1 PFAM: glycosyl transferase family 39; KEGG: aau:AAur_1329 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_001363393.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aau:AAur_1330 tetrapyrrole methylase family protein YP_001363390.1 KEGG: cya:CYA_1816 tetratricopeptide repeat protein YP_001363389.1 KEGG: cya:CYA_1852 TPR repeat protein YP_001363387.1 PFAM: acyltransferase 3; KEGG: art:Arth_2002 acyltransferase 3 YP_001363386.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na?? symporter; KEGG: art:Arth_1378 SSS sodium solute transporter superfamily YP_001363385.1 PFAM: protein of unknown function DUF485; KEGG: nfa:nfa17940 hypothetical protein YP_001363384.1 KEGG: rha:RHA1_ro03501 hypothetical protein YP_001363383.1 PFAM: amidohydrolase; amidohydrolase; KEGG: tte:TTE0530 imidazolonepropionase and related amidohydrolase YP_001363382.1 PFAM: diacylglycerol kinase catalytic region; KEGG: nca:Noca_4345 diacylglycerol kinase, catalytic region YP_001363381.1 PFAM: periplasmic binding protein; KEGG: rha:RHA1_ro06445 ABC Fe(3+) transporter, substrate binding component YP_001363380.1 PFAM: ABC transporter inner membrane protein; KEGG: cdi:DIP0608 ABC transport system membrane protein YP_001363379.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lxx:Lxx15770 glycine betaine/proline porter YP_001363378.1 PFAM: NLPA lipoprotein; KEGG: lxx:Lxx15780 ABC-type transport systems, periplasmic component YP_001363377.1 KEGG: art:Arth_3858 uncharacterized conserved small protein-like protein YP_001363375.1 PFAM: OsmC family protein; KEGG: mes:Meso_0693 OsmC-like protein YP_001363374.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pac:PPA0619 transport-protein, permease for cytosine/purines YP_001363373.1 KEGG: bxe:Bxe_B1543 monooxygenase, DszA family YP_001363372.1 TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; KEGG: tfu:Tfu_2662 adenosine deaminase YP_001363371.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV771 LysR-family transcriptional regulator YP_001363370.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0882 transcriptional regulator, GntR family YP_001363369.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1492 major facilitator superfamily MFS_1 YP_001363368.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2548 3-oxoacyl-[acyl-carrier-protein] reductase YP_001363367.1 PFAM: aldose 1-epimerase; KEGG: sco:SCO2407 aldose 1-epimerase YP_001363366.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: lxx:Lxx18890 uracil-DNA glycosylase YP_001363365.1 KEGG: ace:Acel_0097 hypothetical protein YP_001363364.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: fal:FRAAL0603 cold-shock protein; nucleic acid-binding domain YP_001363363.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001363362.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sco:SCO7032 hypothetical protein YP_001363361.1 PFAM: FAD linked oxidase domain protein; KEGG: art:Arth_4010 FAD linked oxidase domain protein YP_001363360.1 KEGG: pac:PPA2297 hypothetical protein YP_001363359.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tfu:Tfu_2519 hypothetical protein YP_001363358.1 KEGG: nca:Noca_3295 hypothetical protein YP_001363357.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mva:Mvan_5050 molybdopterin biosynthesis MoaE YP_001363356.1 KEGG: fal:FRAAL1263 conserved hypothetical protein; SAM domain YP_001363355.1 PFAM: FAD dependent oxidoreductase; KEGG: bbr:BB1499 monoxygenase YP_001363354.1 KEGG: cef:CE1094 hypothetical protein YP_001363353.1 PFAM: thiamineS protein; KEGG: mkm:Mkms_4565 thiamineS protein YP_001363352.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001363351.1 KEGG: blo:BL0003 hypothetical protein YP_001363350.1 KEGG: aau:AAur_3538 hypothetical protein YP_001363349.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bad:BAD_0057 possible DO serine protease YP_001363348.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_0783 periplasmic sensor signal transduction histidine kinase YP_001363347.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0784 two component transcriptional regulator, winged helix family YP_001363346.1 KEGG: rxy:Rxyl_2213 hypothetical protein YP_001363345.1 KEGG: sco:SCO1348 hypothetical protein YP_001363344.1 PFAM: protein of unknown function DUF839; KEGG: rxy:Rxyl_0309 twin-arginine translocation pathway signal YP_001363343.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: nfa:nfa20170 peptidase YP_001363342.1 PFAM: Hemolysin-type calcium-binding region; nucleic acid binding OB-fold tRNA/helicase-type; endonuclease/exonuclease/phosphatase; KEGG: nca:Noca_2322 endonuclease/exonuclease/phosphatase YP_001363341.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mkm:Mkms_2398 alcohol dehydrogenase, zinc-binding domain protein YP_001363340.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pac:PPA1839 glycerophosphoryl diester phosphodiesterase YP_001363339.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sma:SAV3912 ATP-dependent DNA helicase YP_001363338.1 KEGG: mav:MAV_1372 hypothetical protein YP_001363337.1 KEGG: sma:SAV3911 hypothetical protein YP_001363336.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001363335.1 PFAM: asparaginase/glutaminase; KEGG: bte:BTH_I2166 asparaginase family protein YP_001363334.1 KEGG: art:Arth_1511 ATP-dependent DNA helicase YP_001363333.1 PFAM: fatty acid desaturase; KEGG: aau:AAur_1973 delta 6 fatty acid desaturase YP_001363332.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: msm:MSMEG_0559 hypothetical protein YP_001363331.1 KEGG: nfa:nfa30000 hypothetical protein YP_001363330.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sco:SCO3826 ion channel membrane protein YP_001363329.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rpa:RPA3170 diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains YP_001363328.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_001363327.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: msm:MSMEG_0425 membrane protein DcsA YP_001363326.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: art:Arth_2457 transcriptional regulator, GntR family YP_001363325.1 PFAM: protein of unknown function DUF218; KEGG: fal:FRAAL4743 hypothetical protein; signal peptide YP_001363324.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bch:Bcen2424_2568 pyridoxamine 5'-phosphate oxidase YP_001363323.1 KEGG: fra:Francci3_0107 hypothetical protein YP_001363322.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV630 LacI-family transcriptional regulator YP_001363321.1 PFAM: conserved hypothetical protein 698; KEGG: rha:RHA1_ro08851 hypothetical protein YP_001363320.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: rle:RL0087 hypothetical protein YP_001363319.1 PFAM: protein of unknown function DUF1810; KEGG: psb:Psyr_2294 hypothetical protein YP_001363318.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_001363317.1 KEGG: tfu:Tfu_0370 hypothetical protein YP_001363316.1 KEGG: nca:Noca_0726 hypothetical protein YP_001363315.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump YP_001363314.1 PFAM: regulatory protein MarR; KEGG: mpa:MAP0819 hypothetical protein YP_001363313.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: azo:azo1490 conserved hypothetical signaling protein YP_001363312.1 PFAM: aminotransferase class I and II; KEGG: fal:FRAAL4323 aminotransferase YP_001363311.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpa:MAP3977c short-chain type oxidoreductase YP_001363309.1 KEGG: sco:SCO4331 hypothetical protein YP_001363308.1 KEGG: fal:FRAAL6731 hypothetical protein YP_001363307.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ace:Acel_0104 cold-shock DNA-binding domain protein YP_001363306.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO4323 hydrolase YP_001363305.1 PFAM: manganese and iron superoxide dismutase; KEGG: rha:RHA1_ro04009 superoxide dismutase YP_001363304.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nfa:nfa30720 transcriptional regulator YP_001363303.1 PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2274 major facilitator superfamily MFS_1 YP_001363302.1 PFAM: copper resistance protein CopC; KEGG: aau:AAur_0407 copper resistance protein, CopC family YP_001363301.1 KEGG: sal:Sala_0445 hypothetical protein YP_001363300.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0090 extracellular solute-binding protein, family 1 YP_001363299.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rxy:Rxyl_0945 transcriptional regulator, LacI family YP_001363298.1 PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase YP_001363297.1 PFAM: RbsD or FucU transport; KEGG: pat:Patl_3642 RbsD or FucU transport YP_001363296.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: aba:Acid345_0902 alpha-L-fucosidase YP_001363295.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bad:BAD_0150 LacI-type transcriptional regulator YP_001363294.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase YP_001363293.1 PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_0934 solute binding lipoprotein YP_001363292.1 PFAM: ABC transporter inner membrane protein; KEGG: tfu:Tfu_0935 multiple sugar transport system permease protein YP_001363291.1 PFAM: ABC transporter inner membrane protein; KEGG: bha:BH1926 multiple sugar transport system permease protein YP_001363290.1 KEGG: ani:AN8599.2 hypothetical protein YP_001363289.1 KEGG: fra:Francci3_0984 hypothetical protein YP_001363288.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_I0790 acetyltransferase, GNAT family YP_001363287.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lxx:Lxx16520 cysteine desulfurase YP_001363286.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cef:CE1115 nicotinate mononucleotide pyrophosphorylase YP_001363285.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_2559 L-aspartate oxidase YP_001363284.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001363283.1 PFAM: NUDIX hydrolase; KEGG: cef:CE1117 hypothetical protein YP_001363282.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aau:AAur_3056 major facilitator superfamily (MFS) transporter YP_001363281.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: nca:Noca_0778 deoxyribodipyrimidine photo-lyase YP_001363280.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: nca:Noca_0779 iron dependent repressor YP_001363279.1 PFAM: NLP/P60 protein; KEGG: aau:AAur_pTC10149 protein of unknown function, NlpC/P60 domain YP_001363278.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: lxx:Lxx17860 hypothetical protein YP_001363277.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nca:Noca_2806 ABC transporter YP_001363275.1 PFAM: RNA-binding S4 domain protein; KEGG: cyb:CYB_1892 S4 domain protein YP_001363274.1 PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_3287 hydrolase, alpha/beta fold family protein YP_001363273.1 PFAM: cell wall binding repeat 2-containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2-containing protein YP_001363272.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ace:Acel_1383 protein of unknown function DUF6, transmembrane YP_001363271.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rha:RHA1_ro05772 hypothetical protein YP_001363269.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001363268.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001363267.1 PFAM: acyl-CoA thioesterase; KEGG: aau:AAur_2394 acyl-CoA thioesterase II YP_001363266.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_1276 alcohol dehydrogenase YP_001363265.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sma:SAV5980 alpha-glucosidase YP_001363264.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001363263.1 PFAM: helix-turn-helix domain protein; KEGG: lxx:Lxx04230 transcriptional regulator YP_001363262.1 PFAM: nitroreductase; KEGG: fal:FRAAL5471 NADH dehydrogenase/NAD(P)H nitroreductase YP_001363261.1 PFAM: helix-turn-helix HxlR type; KEGG: rha:RHA1_ro02869 possible transcriptional regulator, ArsR family YP_001363260.1 PFAM: globin; KEGG: lxx:Lxx08710 globin-like protein YP_001363259.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sco:SCO0841 oxidoreductase YP_001363258.1 PFAM: MscS Mechanosensitive ion channel; KEGG: nca:Noca_1378 MscS mechanosensitive ion channel YP_001363257.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: ace:Acel_1604 prolyl oligopeptidase YP_001363256.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; KEGG: art:Arth_2153 4-alpha-glucanotransferase YP_001363255.1 PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sma:SAV4111 transcriptional regulator YP_001363254.1 KEGG: sco:SCO7265 hypothetical protein YP_001363253.1 PFAM: transcription factor WhiB; KEGG: sco:SCO5190 DNA-binding protein YP_001363252.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: aau:AAur_2388 aminopeptidase N YP_001363251.1 KEGG: art:Arth_2402 hypothetical protein YP_001363250.1 KEGG: xcc:XCC1080 hypothetical protein YP_001363249.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001363248.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: tfu:Tfu_0694 DNA repair hydrolase YP_001363247.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: ace:Acel_1597 serine phosphatase YP_001363246.1 PFAM: glycerate kinase; KEGG: aau:AAur_3509 glycerate kinase YP_001363245.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001363244.1 PFAM: peptidase S14 ClpP; KEGG: rha:RHA1_ro01372 ATP-dependent protease proteolytic subunit YP_001363243.1 PFAM: peptidase S14 ClpP; KEGG: aau:AAur_2381 ATP-dependent Clp protease, proteolytic subunit ClpP YP_001363242.1 binds and unfolds substrates as part of the ClpXP protease YP_001363241.1 PFAM: YceI family protein; KEGG: sma:SAV4191 hypothetical protein YP_001363240.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Cna B domain protein; major facilitator superfamily MFS_1; KEGG: sma:SAV4190 transmembrane efflux protein YP_001363239.1 PFAM: regulatory protein MarR; KEGG: sma:SAV4189 MarR-family transcriptional regulator YP_001363238.1 PFAM: regulatory protein MarR; KEGG: sco:SCO5287 MarR-family transcriptional regulator YP_001363237.1 PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family YP_001363236.1 PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: aau:AAur_2893 myo-inositol-1-phosphate synthase YP_001363235.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001363234.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001363233.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV377 acyl-CoA synthetase, long-chain fatty acid:CoA ligase YP_001363232.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: rxy:Rxyl_0375 acyl-CoA dehydrogenase-like protein YP_001363231.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dps:DP2705 related to methyl-accepting chemotaxis protein YP_001363230.1 PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sco:SCO6026 fatty acid oxidation complex alpha-subunit YP_001363229.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: tfu:Tfu_1903 thiolase YP_001363228.1 PFAM: periplasmic binding protein; KEGG: rxy:Rxyl_0419 periplasmic binding protein YP_001363227.1 KEGG: mva:Mvan_4123 formate/nitrite family of transporters-like protein YP_001363226.1 PFAM: glycosyl transferase family 2; KEGG: nca:Noca_3497 glycosyl transferase, family 2 YP_001363225.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001363224.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tfu:Tfu_2190 folylpolyglutamate synthetase YP_001363223.1 KEGG: art:Arth_2396 hypothetical protein YP_001363222.1 KEGG: rha:RHA1_ro11050 hypothetical protein YP_001363221.1 KEGG: msm:MSMEG_2246 hypothetical protein YP_001363220.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06844 sugar transporter, MFS superfamily YP_001363219.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL5706 quinone binding protein; glyoxalase domain YP_001363218.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO6119 AraC family transcriptional regulator YP_001363217.1 PFAM: nucleoside diphosphate kinase; KEGG: lxx:Lxx08000 nucleoside diphosphate kinase YP_001363216.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_4920 BH3119 unknown conserved protein in others YP_001363215.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_2856 acetate--CoA ligase YP_001363214.1 KEGG: nfa:nfa17440 oxygenase YP_001363213.1 KEGG: nfa:nfa17430 oxygenase YP_001363212.1 PFAM: protein of unknown function DUF1684; KEGG: rha:RHA1_ro02218 hypothetical protein YP_001363211.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: tfu:Tfu_1983 cysteine desulphurases, SufS YP_001363210.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: mva:Mvan_2737 SUF system FeS assembly protein, NifU family YP_001363209.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO0289 probable transcriptional regulator YP_001363208.1 PFAM: oxidoreductase domain protein; KEGG: ace:Acel_1039 oxidoreductase domain protein YP_001363207.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: ace:Acel_2050 glycoside hydrolase, family 3 domain protein YP_001363206.1 KEGG: mul:MUL_3476 conserved hypothetical secreted protein YP_001363205.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV7261 acetyltransferase YP_001363204.1 SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro02238 hypothetical protein YP_001363203.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: nfa:nfa53590 O-succinylhomoserine sulfhydrylase YP_001363202.1 PFAM: methionine synthase vitamin-B12 independent; KEGG: cef:CE2028 epoxyalkane:coenzyme M transferase YP_001363201.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: nca:Noca_3077 methyltransferase type 11 YP_001363200.1 KEGG: sma:SAV6547 hypothetical protein YP_001363199.1 PFAM: ROK family protein; KEGG: sco:SCO0734 transcriptional repressor YP_001363198.1 PFAM: glycoside hydrolase clan GH-D; KEGG: aau:AAur_3362 alpha-galactosidase (melibiase) YP_001363197.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: sco:SCO1026 transcriptional regulatory protein YP_001363196.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein YP_001363195.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_3380 ABC transporter inner membrane protein YP_001363194.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_3381 ABC transporter inner membrane protein YP_001363193.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV2095 beta-galactosidase YP_001363192.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB5308 melibiose operon regulatory protein YP_001363191.1 KEGG: blo:BL0177 possible alpha-galactosidase YP_001363190.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: mkm:Mkms_0905 acyl-CoA dehydrogenase, type 2, C-terminal domain YP_001363189.1 KEGG: msm:MSMEG_2045 monoxygenase YP_001363188.1 PFAM: ABC transporter inner membrane protein; KEGG: mkm:Mkms_0902 ABC transporter inner membrane protein YP_001363187.1 PFAM: ABC transporter inner membrane protein; KEGG: msm:MSMEG_0554 ABC transporter permease protein YP_001363186.1 PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_0553 probable sugar ABC transporter, substrate-binding protein YP_001363185.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sco:SCO2599 hypothetical protein YP_001363184.1 PFAM: ribosomal protein L21; KEGG: aau:AAur_2367 ribosomal protein L21 YP_001363183.1 involved in the peptidyltransferase reaction during translation YP_001363182.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001363181.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: sco:SCO2587 glutamate 5-kinase YP_001363180.1 KEGG: ace:Acel_0760 hypothetical protein YP_001363179.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: ace:Acel_0761 gamma-glutamyl phosphate reductase YP_001363178.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO4658 dolichol-phosphate mannosyltransferase YP_001363177.1 TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: lxx:Lxx08100 nicotinate-nucleotide adenyltransferase YP_001363176.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: tfu:Tfu_2170 iojap-related protein YP_001363175.1 PFAM: phosphoglycerate mutase; KEGG: sco:SCO2576 phosphoglycerate mutase YP_001363174.1 KEGG: bur:Bcep18194_B0762 beta-lactamase YP_001363173.1 PFAM: luciferase family protein; KEGG: aau:AAur_3081 alkanal monooxygenase (FMN-linked) YP_001363172.1 PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: rha:RHA1_ro01564 shikimate 5-dehydrogenase YP_001363171.1 PFAM: GGDEF domain containing protein; KEGG: mav:MAV_4962 sensory box histidine kinase YP_001363170.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001363169.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dvl:Dvul_0757 GCN5-related N-acetyltransferase YP_001363168.1 KEGG: sco:SCO7121 secreted protein YP_001363167.1 KEGG: cgb:cg1527 hypothetical protein YP_001363166.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_1494 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001363165.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO0307 DNA-binding protein YP_001363164.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; Tetratricopeptide TPR_4; KEGG: msm:MSMEG_4431 regulatory protein YP_001363163.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: rha:RHA1_ro02947 beta-glucosidase YP_001363162.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: fra:Francci3_1257 helix-hairpin-helix DNA-binding, class 1 YP_001363161.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein YP_001363160.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: fal:FRAAL0601 conserved hypothetical protein; adenylate cyclase domain YP_001363159.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: sco:SCO6575 hypothetical protein YP_001363157.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: vei:Veis_3569 oxidoreductase domain protein YP_001363156.1 KEGG: csa:Csal_1011 beta-lactamase-like protein YP_001363155.1 PFAM: protein of unknown function DUF181; KEGG: mma:MM1458 hypothetical protein YP_001363154.1 PFAM: glycosyl transferase group 1; KEGG: mth:MTH450 LPS biosynthesis RfbU related protein YP_001363153.1 PFAM: LmbE family protein; KEGG: mma:MM2100 hypothetical protein YP_001363152.1 PFAM: amidohydrolase; KEGG: art:Arth_3965 amidohydrolase 3 YP_001363150.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: lxx:Lxx14720 DNA polymerase III, delta subunit YP_001363149.1 PFAM: ribosomal protein S20; KEGG: mva:Mvan_3912 ribosomal protein S20 YP_001363148.1 KEGG: lxx:Lxx02840 hypothetical protein YP_001363147.1 KEGG: tfu:Tfu_1898 lipoprotein YP_001363146.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001363145.1 PFAM: major facilitator superfamily MFS_1; KEGG: mva:Mvan_4475 drug resistance transporter, Bcr/CflA subfamily YP_001363143.1 PFAM: luciferase family protein; KEGG: sma:SAV1156 monooxygenase YP_001363142.1 KEGG: sco:SCO6046 hypothetical protein YP_001363141.1 PFAM: Acetyl xylan esterase; KEGG: art:Arth_3303 acetyl xylan esterase YP_001363140.1 PFAM: protein of unknown function DUF1206; KEGG: nca:Noca_2420 protein of unknown function DUF1206 YP_001363139.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001363137.1 PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase YP_001363136.1 KEGG: mxa:MXAN_4234 hypothetical protein YP_001363135.1 KEGG: msm:MSMEG_3020 hypothetical protein YP_001363134.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: regulatory protein DeoR; Negative regulator of class I heat shock protein; KEGG: sma:SAV5569 HrcA-family repressor protein YP_001363133.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sma:SAV5570 DnaJ protein YP_001363132.1 PFAM: chemotaxis sensory transducer; KEGG: bja:blr2976 methyl accepting chemotaxis protein YP_001363131.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: rpa:RPA4312 sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer YP_001363130.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06021 possible acetyltransferase YP_001363129.1 KEGG: nca:Noca_1906 hypothetical protein YP_001363128.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tfu:Tfu_0842 RNA polymerase ECF-subfamily sigma factor YP_001363127.1 PFAM: histidine triad (HIT) protein; KEGG: sco:SCO2548 Hit-family protein YP_001363126.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: mva:Mvan_2276 asparagine synthase (glutamine-hydrolyzing) YP_001363125.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mva:Mvan_2275 GCN5-related N-acetyltransferase YP_001363124.1 PFAM: formamidopyrimidine-DNA glycolase; KEGG: nfa:nfa13280 formamidopyrimidine-DNA glycosylase YP_001363123.1 KEGG: sco:SCO0606 hypothetical protein YP_001363122.1 PFAM: glutamate--cysteine ligase GCS2; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: fal:FRAAL4489 conserved hypothetical protein; coiled-coil domain YP_001363121.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: fal:FRAAL4487 acylaminoacyl-peptidase YP_001363120.1 PFAM: peptidase M42 family protein; KEGG: mpa:MAP1689 hypothetical protein YP_001363119.1 TIGRFAM: para-aminobenzoate synthase, subunit I; glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: sma:SAV1178 para-aminobenzoic acid synthase YP_001363118.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: nca:Noca_1139 diguanylate cyclase YP_001363117.1 KEGG: pac:PPA2261 aminotransferase, class IV YP_001363116.1 PFAM: protein of unknown function DUF72; KEGG: nca:Noca_1965 protein of unknown function DUF72 YP_001363115.1 PFAM: PhoH family protein; KEGG: sma:SAV5583 phosphate starvation-induced protein YP_001363114.1 PFAM: protein of unknown function UPF0054; KEGG: tfu:Tfu_0845 protein of unknown function UPF0054 YP_001363113.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ace:Acel_0791 CBS domain containing protein YP_001363112.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001363111.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: rha:RHA1_ro03755 possible membrane protein YP_001363110.1 KEGG: sco:SCO6525 hypothetical protein YP_001363109.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3311 aldo/keto reductase YP_001363108.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7655 oxidoreductase YP_001363107.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7654 oxidoreductase YP_001363106.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV1163 LysR-family transcriptional regulator YP_001363105.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: art:Arth_2226 2-isopropylmalate synthase YP_001363104.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ace:Acel_0096 diguanylate cyclase YP_001363103.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: sco:SCO2510 DNA repair protein RecO (recombination protein O) YP_001363102.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_0069 phosphoglycerate mutase YP_001363101.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ace:Acel_0796 undecaprenyl diphosphate synthase YP_001363100.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: fal:FRAAL0594 phosphoenolpyruvate carboxylase (PEPCase) (PepC) YP_001363099.1 PFAM: histone family protein DNA-binding protein; KEGG: bad:BAD_0552 DNA-binding protein HB1 YP_001363098.1 PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro01222 Fe(3+) uptake regulation protein YP_001363097.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001363096.1 PFAM: benzoate membrane transport protein; xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transport protein BenE YP_001363095.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_6798 ribose operon repressor YP_001363094.1 PFAM: UspA domain protein; KEGG: art:Arth_1392 UspA domain protein YP_001363093.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: aau:AAur_1486 IMP dehydrogenase / GMP reductase domain protein YP_001363092.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: art:Arth_1337 deoxyguanosinetriphosphate triphosphohydrolase YP_001363091.1 PFAM: CoA-binding domain protein; KEGG: art:Arth_0530 CoA-binding domain protein YP_001363090.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_0531 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001363089.1 TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase DnaG DnaB-binding; KEGG: art:Arth_1338 DNA primase YP_001363088.1 TIGRFAM: methylase; PFAM: RNA methylase; conserved hypothetical protein 95; methyltransferase small; KEGG: rha:RHA1_ro08546 methyltransferase YP_001363087.1 SMART: zinc finger CDGSH-type domain protein; KEGG: nfa:nfa48540 hypothetical protein YP_001363086.1 KEGG: sco:SCO0759 hypothetical protein YP_001363082.1 PFAM: glutaredoxin; KEGG: lxx:Lxx14170 thioredoxin YP_001363081.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_001363080.1 PFAM: iron permease FTR1; KEGG: fal:FRAAL1404 transmembrane protein YP_001363079.1 PFAM: protein of unknown function DUF451; KEGG: fal:FRAAL1402 lipoprotein YP_001363078.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: ace:Acel_0190 Tat-translocated enzyme YP_001363077.1 KEGG: aau:AAur_0202 hypothetical protein YP_001363076.1 KEGG: ace:Acel_1028 hypothetical protein YP_001363075.1 KEGG: art:Arth_2470 hypothetical protein YP_001363074.1 PFAM: beta-ketoacyl synthase; KEGG: art:Arth_2469 beta-ketoacyl synthase YP_001363073.1 carries the fatty acid chain in fatty acid biosynthesis YP_001363072.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: art:Arth_2467 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001363071.1 PFAM: acyl transferase; KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase YP_001363070.1 KEGG: sco:SCO2386 hypothetical protein YP_001363069.1 KEGG: aba:Acid345_2688 TPR repeat protein YP_001363068.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001363067.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: msm:MSMEG_0165 formate dehydrogenase family protein accessory protein FdhD YP_001363066.1 KEGG: ace:Acel_0882 hypothetical protein YP_001363065.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5802 thiol-specific antioxidant protein YP_001363064.1 PFAM: protein of unknown function DUF34; KEGG: aau:AAur_2414 uncharacterized conserved protein TIGR00486 YP_001363063.1 PFAM: protein of unknown function DUF164; KEGG: ace:Acel_0901 protein of unknown function DUF164 YP_001363062.1 PFAM: ribonuclease H; phosphoglycerate mutase; KEGG: fal:FRAAL2221 bifunctional protein (ribonuclease H/phosphoglycerate mutase) YP_001363061.1 PFAM: MMPL domain protein; KEGG: mva:Mvan_0683 MmpL domain protein YP_001363060.1 PFAM: regulatory protein MarR; KEGG: mkm:Mkms_0532 transcriptional regulator, MarR family YP_001363059.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO4596 two-component system response regulator YP_001363058.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: nfa:nfa22880 two-component system sensor kinase YP_001363057.1 PFAM: protein of unknown function DUF1023; KEGG: sco:SCO3760 secreted protein YP_001363056.1 PFAM: arsenical pump membrane protein; Citrate transporter; KEGG: art:Arth_3063 arsenical pump membrane protein YP_001363055.1 PFAM: protein of unknown function DUF328; KEGG: art:Arth_2442 protein of unknown function DUF328 YP_001363052.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL0027 transcriptional regulator (HTH-type) YP_001363051.1 PFAM: OsmC family protein; KEGG: fra:Francci3_0028 OsmC-like protein YP_001363049.1 KEGG: sma:SAV3392 hypothetical protein YP_001363048.1 PFAM: luciferase family protein; KEGG: rha:RHA1_ro04948 hypothetical protein YP_001363047.1 PFAM: ROK family protein; KEGG: tfu:Tfu_1811 polyphosphate glucokinase/transcriptional regulator YP_001363046.1 PFAM: PspC domain protein; KEGG: sma:SAV3356 hypothetical protein YP_001363045.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: aau:AAur_1728 methionine aminopeptidase, type I YP_001363044.1 PFAM: toxic anion resistance family protein; KEGG: nar:Saro_2959 toxic anion resistance YP_001363043.1 KEGG: fra:Francci3_2917 hypothetical protein YP_001363042.1 KEGG: mca:MCA1631 hypothetical protein YP_001363040.1 PFAM: protein of unknown function DUF124; KEGG: sus:Acid_4939 protein of unknown function DUF124 YP_001363039.1 PFAM: stress protein; KEGG: fal:FRAAL5898 tellurium resistance protein TerE YP_001363038.1 PFAM: protein of unknown function DUF475; KEGG: rha:RHA1_ro08201 possible integral membrane protein YP_001363037.1 KEGG: rha:RHA1_ro08202 possible tellurium resistance protein YP_001363036.1 PFAM: stress protein; KEGG: pna:Pnap_4657 stress protein YP_001363035.1 KEGG: rha:RHA1_ro02446 possible citrate lyase beta subunit YP_001363034.1 KEGG: sma:SAV5809 hypothetical protein YP_001363033.1 KEGG: sco:SCO2362 hypothetical protein YP_001363032.1 KEGG: sco:SCO2361 hypothetical protein YP_001363030.1 PFAM: alpha/beta hydrolase fold; KEGG: nca:Noca_3836 alpha/beta hydrolase fold YP_001363029.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nfa:nfa51510 cysteine synthase YP_001363028.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aau:AAur_3011 alpha glucosidase YP_001363027.1 PFAM: ROK family protein; KEGG: art:Arth_3042 ROK family protein YP_001363026.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: mbb:BCG_2242 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB YP_001363025.1 TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: sco:SCO2238 NAD(+) synthase (glutamine-hydrolysing) YP_001363024.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: tfu:Tfu_0982 glutamine synthetase type I YP_001363023.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_001363022.1 PFAM: luciferase family protein; KEGG: mva:Mvan_0698 luciferase family protein YP_001363021.1 KEGG: gme:Gmet_0577 parallel beta-helix repeat protein YP_001363020.1 KEGG: nca:Noca_3093 hypothetical protein YP_001363019.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ace:Acel_0923 glutamine synthetase, type I YP_001363018.1 PFAM: RDD domain containing protein; KEGG: aau:AAur_1745 transmembrane protein, RDD family domain YP_001363017.1 KEGG: art:Arth_1603 integral membrane protein YP_001363016.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001363015.1 PFAM: beta-lactamase; KEGG: sco:SCO3912 beta-lactamase YP_001363014.1 PFAM: luciferase family protein; KEGG: nca:Noca_2313 luciferase family protein YP_001363013.1 PFAM: glycosyl transferase family 2; KEGG: fra:Francci3_1567 glycosyl transferase, family 2 YP_001363012.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: tfu:Tfu_0992 lipoate-protein ligase B YP_001363011.1 PFAM: peptidase S51 dipeptidase E; KEGG: art:Arth_0136 peptidase S51, dipeptidase E YP_001363010.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: art:Arth_3390 amine oxidase YP_001363009.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aau:AAur_1749 protein kinase domain protein YP_001363008.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: fal:FRAAL5153 NAD dependent epimerase/dehydratase family YP_001363007.1 TIGRFAM: 2-oxoglutarate dehydrogenase E2 component; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: aau:AAur_1755 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_001363006.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001363005.1 KEGG: pfa:PFD0320c hypothetical protein YP_001363004.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: sma:SAV6025 leucyl aminopeptidase YP_001363003.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dge:Dgeo_1160 GCN5-related N-acetyltransferase YP_001363002.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sma:SAV6030 nicotinate-nucleotide-dimethylbenzimida zole phosphoribosyltransferase YP_001363001.1 PFAM: GAF domain protein; KEGG: rha:RHA1_ro06080 hypothetical protein YP_001363000.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 aldehyde dehydrogenase YP_001362999.1 PFAM: protein of unknown function DUF779; KEGG: sco:SCO1192 hypothetical protein YP_001362998.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: psp:PSPPH_3186 oxidoreductase, Gfo/Idh/MocA family YP_001362997.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pae:PA3749 probable major facilitator superfamily (MFS) transporter YP_001362996.1 PFAM: dihydroorotate dehydrogenase; KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase YP_001362995.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1720 major facilitator superfamily MFS_1 YP_001362994.1 KEGG: fra:Francci3_3127 hypothetical protein YP_001362993.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3949 aldo/keto reductase YP_001362992.1 PFAM: cytochrome oxidase assembly; KEGG: sco:SCO1930 integral membrane transport protein YP_001362991.1 KEGG: aau:AAur_2218 hypothetical protein YP_001362990.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aau:AAur_2217 peptidase family M20/M25/M40 protein YP_001362989.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: aau:AAur_2216 iron-sulfur cluster assembly accessory protein YP_001362988.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001362987.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: art:Arth_2217 cytochrome C oxidase, subunit II YP_001362986.1 TIGRFAM: cytochrome C oxidase subunit I type; PFAM: cytochrome C oxidase subunit I; KEGG: aau:AAur_2214 cytochrome C oxidase, subunit I YP_001362985.1 KEGG: aau:AAur_2213 integral membrane protein YP_001362984.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nca:Noca_3138 ErfK/YbiS/YcfS/YnhG family protein YP_001362983.1 KEGG: tfu:Tfu_1576 conserved hypothetical protein 374 YP_001362982.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lxx:Lxx08390 short chain dehydrogenase YP_001362981.1 PFAM: cytochrome b/b6 domain; KEGG: aau:AAur_2210 ubiquinol-cytochrome C reductase cytochrome b subunit YP_001362980.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: aau:AAur_2209 ubiquinol-cytochrome C reductase iron-sulfur subunit YP_001362979.1 PFAM: cytochrome C class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit YP_001362978.1 PFAM: cytochrome C oxidase subunit III; KEGG: aau:AAur_2207 cytochrome C oxidase subunit III YP_001362977.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; KEGG: art:Arth_2208 anthranilate phosphoribosyltransferase YP_001362976.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nca:Noca_3129 regulatory protein, AsnC/Lrp family YP_001362975.1 contains 3'-5'exonuclease domain YP_001362974.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sus:Acid_5521 methyltransferase type 11 YP_001362973.1 KEGG: nca:Noca_3125 hypothetical protein YP_001362972.1 KEGG: sco:SCO2134 hypothetical protein YP_001362971.1 PFAM: glycosyl transferase group 1; KEGG: sma:SAV6067 glycosyl transferase YP_001362970.1 KEGG: fal:FRAAL2850 hypothetical protein; membrane protein YP_001362969.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6069 acyl-CoA synthetase, long-chain-fatty-acid:CoA ligase YP_001362968.1 KEGG: cal:CaO19_4334 hypothetical protein YP_001362967.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: fra:Francci3_3092 glucokinase ROK YP_001362966.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: art:Arth_1548 glucokinase, ROK family YP_001362965.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ace:Acel_0980 endonuclease/exonuclease/phosphatase YP_001362964.1 KEGG: sma:SAV6078 hypothetical protein YP_001362963.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_1552 phospholipid/glycerol acyltransferase YP_001362962.1 PFAM: phosphofructokinase; KEGG: fra:Francci3_3085 phosphofructokinase, pyrophosphate dependent YP_001362961.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; KEGG: art:Arth_1553 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001362960.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nca:Noca_3086 protein kinase YP_001362959.1 PFAM: peptidoglycan-binding LysM; lytic transglycosylase catalytic; KEGG: art:Arth_1555 peptidoglycan-binding LysM YP_001362958.1 KEGG: sco:SCO2105 transcriptional regulatory protein YP_001362957.1 PFAM: squalene/phytoene synthase; KEGG: fra:Francci3_1383 squalene/phytoene synthase YP_001362956.1 TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fal:FRAAL2160 phytoene dehydrogenase (phytoene desaturase) YP_001362955.1 PFAM: polyprenyl synthetase; KEGG: art:Arth_1557 polyprenyl synthetase YP_001362954.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: fal:FRAAL2165 CDP-diacylglycerol-inositol 3-phosphatidyltransferase YP_001362953.1 TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fal:FRAAL2168 phytoene dehydrogenase YP_001362952.1 PFAM: glycosyl transferase family 2; KEGG: fal:FRAAL2169 glycosyl transferase YP_001362951.1 PFAM: protein of unknown function DUF422; KEGG: rha:RHA1_ro01102 possible caratenoid biosynthesis protein YP_001362950.1 KEGG: fra:Francci3_1397 hypothetical protein YP_001362949.1 PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa54420 hydrolase YP_001362948.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_1048 hypothetical protein YP_001362947.1 KEGG: nca:Noca_4053 hypothetical protein YP_001362946.1 KEGG: aau:AAur_0447 lipoprotein YP_001362944.1 KEGG: nca:Noca_3078 hypothetical protein YP_001362943.1 KEGG: sco:SCO1739 DNA polymerase III, alpha chain; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001362942.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sma:SAV6108 methyltransferase YP_001362941.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: tfu:Tfu_1096 DNA-directed DNA polymerase YP_001362940.1 KEGG: sma:SAV6109 hypothetical protein YP_001362939.1 PFAM: transglutaminase domain protein; KEGG: sco:SCO2096 hypothetical protein YP_001362938.1 PFAM: protein of unknown function DUF58; KEGG: ace:Acel_0999 protein of unknown function DUF58 YP_001362937.1 PFAM: ATPase activities AAA_3; ATPase activities AAA_5; KEGG: sma:SAV6112 regulatory protein YP_001362936.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001362935.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: tfu:Tfu_1102 bacterial methyltransferase YP_001362934.1 KEGG: ace:Acel_1003 hypothetical protein YP_001362933.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ace:Acel_1004 peptidoglycan glycosyltransferase YP_001362932.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nca:Noca_3068 UDP-N-acetylmuramyl-tripeptide synthetases YP_001362931.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nfa:nfa17620 UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase YP_001362930.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001362929.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nca:Noca_3065 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001362928.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: aau:AAur_1709 cell division protein FtsW YP_001362927.1 TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; glycosyltransferase 28 domain; KEGG: nca:Noca_3063 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_001362926.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nca:Noca_3062 UDP-N-acetylmuramate--alanine ligase YP_001362925.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: nca:Noca_3061 polypeptide-transport-associated domain protein, FtsQ-type YP_001362924.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: fra:Francci3_1418 cell division protein FtsZ YP_001362923.1 PFAM: protein of unknown function DUF152; KEGG: msm:MSMEG_4221 hypothetical protein YP_001362922.1 PFAM: alanine racemase domain protein; KEGG: tfu:Tfu_1115 protein of unknown function UPF0001 YP_001362921.1 PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein YP_001362920.1 KEGG: art:Arth_1577 hypothetical protein YP_001362919.1 PFAM: DivIVA family protein; KEGG: art:Arth_1578 DivIVA family protein YP_001362918.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sma:SAV6131 DNA-binding protein YP_001362917.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: nfa:nfa17880 signal peptidase YP_001362916.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sma:SAV6133 ribosomal large subunit pseudouridine synthase YP_001362915.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_001362914.1 KEGG: sma:SAV6148 hypothetical protein YP_001362913.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0961 major facilitator superfamily MFS_1 YP_001362911.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sco:SCO2058 transcriptional regulatory protein YP_001362910.1 PFAM: peptidase S16 lon domain protein; KEGG: fra:Francci3_1432 peptidase S16, lon-like YP_001362909.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001362907.1 PFAM: oxidoreductase domain protein; oxidoreductase; KEGG: bcl:ABC3286 NADH-dependent dyhydrogenase YP_001362906.1 PFAM: oxidoreductase domain protein; KEGG: lxx:Lxx24740 oxidoreductase YP_001362905.1 KEGG: nfa:nfa24280 hypothetical protein YP_001362904.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001362903.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: art:Arth_1471 imidazoleglycerol-phosphate dehydratase YP_001362902.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001362901.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_001362900.1 KEGG: art:Arth_1474 hypothetical protein YP_001362899.1 PFAM: DoxX family protein; KEGG: sma:SAV5909 hypothetical protein YP_001362898.1 KEGG: aau:AAur_1611 hypothetical protein YP_001362897.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: art:Arth_1477 translation initiation factor IF-3 YP_001362896.1 PFAM: ribosomal protein L35; KEGG: tfu:Tfu_2065 ribosomal protein L35 YP_001362895.1 TIGRFAM: ribosomal protein L20; KEGG: ace:Acel_1267 ribosomal protein L20 YP_001362894.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sma:SAV6740 rRNA methylase YP_001362893.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: sco:SCO1596 two-component sensor YP_001362892.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: aau:AAur_1623 phenylalanyl-tRNA synthetase, alpha subunit YP_001362891.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: art:Arth_1490 phenylalanyl-tRNA synthetase, beta subunit YP_001362890.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_5930 short-chain dehydrogenase/reductase SDR YP_001362889.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: sco:SCO1580 N-acetyl-gamma-glutamyl-phosphate reductase YP_001362888.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001362887.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001362886.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: aau:AAur_1634 acetylornithine aminotransferase YP_001362885.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: lxx:Lxx06070 ornithine carbamoyltransferase YP_001362884.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001362883.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: art:Arth_1503 argininosuccinate lyase YP_001362882.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: sma:SAV6486 3-methyladenine DNA glycosylase YP_001362881.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: sco:SCO1818 tyrosyl-tRNA synthetase YP_001362880.1 KEGG: sco:SCO1789 hypothetical protein YP_001362879.1 KEGG: fra:Francci3_3164 hypothetical protein YP_001362878.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1788 hypothetical protein YP_001362877.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: tfu:Tfu_2034 hemolysin A YP_001362876.1 PFAM: ATP-NAD/AcoX kinase; KEGG: lxx:Lxx05620 polyphosphate/ATP-NAD kinase YP_001362875.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sco:SCO1780 DNA repair protein YP_001362874.1 PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: tte:TTE1305 hypothetical protein YP_001362873.1 KEGG: rha:RHA1_ro00932 hypothetical protein YP_001362872.1 KEGG: tfu:Tfu_2028 hypothetical protein YP_001362871.1 PFAM: virulence factor MVIN family protein; KEGG: tfu:Tfu_2027 similar to uncharacterized membrane protein virulence factor YP_001362870.1 PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2026 glycosyl transferase YP_001362869.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001362868.1 PFAM: NUDIX hydrolase; KEGG: aau:AAur_1656 MutT/NUDIX family protein YP_001362867.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: art:Arth_1521 tyrosine recombinase XerD YP_001362866.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: sco:SCO1772 partitioning or sporulation protein YP_001362865.1 PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: fra:Francci3_2406 AMP-dependent synthetase and ligase YP_001362864.1 PFAM: SAF domain protein; KEGG: sco:SCO4524 hypothetical protein YP_001362863.1 KEGG: sco:SCO4525 hypothetical protein YP_001362862.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase YP_001362861.1 PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein YP_001362860.1 PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein YP_001362858.1 KEGG: sco:SCP1.173 hypothetical protein YP_001362857.1 PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein YP_001362856.1 KEGG: fra:Francci3_1731 hypothetical protein YP_001362854.1 KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001362853.1 KEGG: sco:SCO4548 integral membrane protein YP_001362852.1 PFAM: protein of unknown function DUF909; KEGG: sco:SCO4509 hypothetical protein YP_001362851.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sco:SCO4508 cell division-related protein YP_001362850.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: aau:AAur_1670 segregation and condensation protein A YP_001362849.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: nca:Noca_2496 segregation and condensation protein B YP_001362848.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: aau:AAur_1672 RNA pseudouridine synthase YP_001362847.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: nca:Noca_2499 chorismate mutase YP_001362846.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_001362845.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: art:Arth_1536 cytidylate kinase YP_001362844.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: aau:AAur_1675 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_001362843.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001362842.1 PFAM: protein of unknown function UPF0060; KEGG: mkm:Mkms_2558 protein of unknown function UPF0060 YP_001362841.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rru:Rru_A3453 ABC transporter component YP_001362840.1 PFAM: ABC transporter inner membrane protein; KEGG: rle:pRL110022 permease component of ABC transporter YP_001362839.1 PFAM: NMT1/THI5 like domain protein; KEGG: rle:pRL90089 hypothetical protein YP_001362838.1 PFAM: luciferase family protein; KEGG: hypothetical protein YP_001362837.1 PFAM: isochorismatase hydrolase; KEGG: isochorismatase family protein YP_001362836.1 KEGG: art:Arth_3260 hypothetical protein YP_001362835.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3259 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001362834.1 PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0141 peptidase C60, sortase A and B YP_001362833.1 KEGG: aau:AAur_0453 hypothetical protein YP_001362832.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; KEGG: tfu:Tfu_2317 ATP-dependent helicase HrpA YP_001362831.1 PFAM: heat shock protein Hsp20; KEGG: fal:FRAAL4031 molecular chaperone HSP18 (small heat shock protein) YP_001362829.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6976 CDP-diacylglycerol--glycerol-3-phosphat e 3-phosphatidyl-transferase YP_001362828.1 PFAM: protein of unknown function DUF881; KEGG: sma:SAV6978 hypothetical protein YP_001362827.1 PFAM: protein of unknown function DUF1290; KEGG: sma:SAV6979 hypothetical protein YP_001362826.1 PFAM: protein of unknown function DUF881; KEGG: sco:SCO1385 hypothetical protein YP_001362825.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: nca:Noca_2714 glycine cleavage system H protein YP_001362824.1 PFAM: Forkhead-associated protein; KEGG: sco:SCO1384 hypothetical protein YP_001362823.1 PFAM: regulatory protein MerR; KEGG: ace:Acel_1225 transcriptional regulator, MerR family YP_001362822.1 PFAM: protein of unknown function DUF151; KEGG: nca:Noca_2711 protein of unknown function DUF151 YP_001362821.1 SMART: regulatory protein MerR; KEGG: aau:AAur_1684 hypothetical protein YP_001362819.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: lxx:Lxx15480 plasmid partitioning protein YP_001362818.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001362817.1 PFAM: VanZ family protein YP_001362816.1 PFAM: protein of unknown function DUF107; KEGG: art:Arth_2190 protein of unknown function DUF107 YP_001362815.1 PFAM: band 7 protein; KEGG: aau:AAur_2190 SPFH domain / band 7 family protein YP_001362814.1 KEGG: csa:Csal_0081 hypothetical protein YP_001362813.1 KEGG: oih:OB0964 hypothetical protein YP_001362812.1 KEGG: fal:FRAAL3165 hypothetical protein YP_001362811.1 KEGG: msm:MSMEG_6233 hypothetical protein YP_001362810.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: sco:SCO0184 hypothetical protein YP_001362809.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mbb:BCG_2080c hypothetical protein YP_001362808.1 PFAM: Fe-S metabolism associated SufE; KEGG: art:Arth_1665 Fe-S metabolism associated SufE YP_001362807.1 PFAM: Rhodanese domain protein; KEGG: aau:AAur_1807 thiosulfate sulfurtransferase YP_001362806.1 PFAM: AFG1-family ATPase; KEGG: sco:SCO6057 ATP/GTP-binding integral membrane protein YP_001362805.1 PFAM: high-affinity nickel-transporter; KEGG: sma:SAV2333 high-affinity nickel-transport protein YP_001362804.1 PFAM: NUDIX hydrolase; KEGG: sth:STH2366 mutator MutT protein YP_001362803.1 TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nfa:nfa18050 glycosyl hydrolase YP_001362802.1 KEGG: fal:FRAAL2117 maltooligosyl trehalose synthase ((1, 4)-alpha-D-glucan 1-alpha-D-glucosylmutase); TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001362801.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sco:SCO7338 glycogen debranching enzyme. YP_001362800.1 PFAM: ribonuclease BN; KEGG: nca:Noca_2354 ribonuclease BN YP_001362799.1 PFAM: amidohydrolase 2; KEGG: aba:Acid345_0658 amidohydrolase 2 YP_001362798.1 PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_2362 glycosyl transferase, group 1 family protein YP_001362797.1 PFAM: sporulation and cell division protein SsgA; KEGG: sco:SCO1541 regulator YP_001362796.1 KEGG: msm:MSMEG_2930 conserved hypothetical protein TIGR02611 YP_001362795.1 KEGG: mlo:mlr4090 hypothetical protein YP_001362794.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001362793.1 PFAM: histidine triad (HIT) protein; KEGG: sco:SCO1530 hypothetical protein YP_001362792.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aau:AAur_2307 CDP-alcohol phosphatidyltransferase YP_001362791.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001362790.1 PFAM: glycosyl transferase group 1; KEGG: sma:SAV6828 glycosyltransferase YP_001362789.1 KEGG: sco:SCO1524 hypothetical protein YP_001362788.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_001362787.1 PFAM: NUDIX hydrolase; KEGG: mav:MAV_3485 hydrolase, NUDIX family protein YP_001362786.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: nfa:nfa37030 amidotransferase YP_001362785.1 PFAM: protein of unknown function DUF28; KEGG: rha:RHA1_ro06891 hypothetical protein YP_001362784.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001362783.1 PFAM: dienelactone hydrolase; KEGG: mxa:MXAN_6883 dienelactone hydrolase family protein YP_001362782.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: helix-hairpin-helix motif; RuvA domain protein; DNA recombination protein RuvA domain I; KEGG: nca:Noca_2386 DNA recombination protein RuvA, domain I YP_001362781.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001362780.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: fra:Francci3_1372 preprotein translocase, YajC subunit YP_001362779.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: fal:FRAAL2144 protein-export membrane protein SecD YP_001362778.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: lxx:Lxx10810 SecF YP_001362777.1 PFAM: phosphoribosyltransferase; KEGG: sco:SCO1514 adenine phosphoribosiltransferase YP_001362776.1 KEGG: sma:SAV6840 ppGpp synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001362775.1 KEGG: mav:MAV_3296 hypothetical protein YP_001362774.1 PFAM: protein of unknown function DUF349; KEGG: art:Arth_2295 protein of unknown function DUF349 YP_001362773.1 PFAM: beta-lactamase domain protein; KEGG: sma:SAV6843 hydrolase YP_001362772.1 PFAM: pentapeptide repeat protein; KEGG: sco:SCO4268 hypothetical protein YP_001362771.1 KEGG: sco:SCO0682 hypothetical protein YP_001362770.1 KEGG: ace:Acel_1323 small GTP-binding protein YP_001362769.1 PFAM: Roadblock/LC7 family protein; KEGG: sco:SCO0683 hypothetical protein YP_001362768.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001362767.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sma:SAV1501 hypothetical protein YP_001362765.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sco:SCO4021 two component system histidine kinase YP_001362764.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4020 two component system response regulator YP_001362763.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: art:Arth_2283 AAA ATPase, central domain protein YP_001362762.1 KEGG: nca:Noca_3690 hypothetical protein YP_001362761.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: fra:Francci3_4347 glycoside hydrolase family 65, central catalytic YP_001362760.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001362759.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: ace:Acel_1329 Holliday junction resolvase YqgF YP_001362758.1 PFAM: aminodeoxychorismate lyase; KEGG: ace:Acel_1328 aminodeoxychorismate lyase YP_001362757.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001362756.1 PFAM: LGFP repeat protein; KEGG: rha:RHA1_ro04060 probable antigen 85 complex protein YP_001362755.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: ace:Acel_1321 twitching motility protein YP_001362754.1 PFAM: type II secretion system protein; KEGG: ace:Acel_1320 type II secretion system protein YP_001362753.1 KEGG: ace:Acel_1318 secretory protein YP_001362752.1 KEGG: ace:Acel_1318 secretory protein YP_001362748.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ace:Acel_1314 peptidase A24A domain protein YP_001362747.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: ace:Acel_1313 type IV pilus assembly protein PilM YP_001362746.1 PFAM: fimbrial assembly family protein; KEGG: ace:Acel_1312 fimbrial assembly family protein YP_001362745.1 KEGG: nca:Noca_1133 hypothetical protein YP_001362744.1 KEGG: rpe:RPE_0517 OmpA/MotB domain protein YP_001362743.1 PFAM: cell wall binding repeat 2-containing protein; KEGG: ctc:CTC00504 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase YP_001362742.1 PFAM: shikimate kinase; KEGG: ace:Acel_1308 shikimate kinase YP_001362741.1 PFAM: 3-dehydroquinate synthase; KEGG: art:Arth_2272 3-dehydroquinate synthase YP_001362740.1 KEGG: nca:Noca_1121 hypothetical protein YP_001362737.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001362736.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: art:Arth_2269 NusB antitermination factor YP_001362735.1 PFAM: helix-turn-helix domain protein; KEGG: sma:SAV6861 DNA-binding protein YP_001362734.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001362733.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001362732.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001362731.1 KEGG: aau:AAur_2267 hypothetical protein YP_001362730.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001362729.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: sma:SAV6867 carbamoyl-phosphate synthase large subunit YP_001362728.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sma:SAV6869 orotidine 5'-phosphate decarboxylase YP_001362726.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_2548 extracellular solute-binding protein, family 5 YP_001362725.1 PFAM: ABC transporter inner membrane protein; KEGG: dge:Dgeo_1190 ABC transporter inner membrane protein YP_001362724.1 PFAM: ABC transporter inner membrane protein; KEGG: gka:GK0469 dipeptide ABC transporter (permease) YP_001362723.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bja:blr3344 ABC transporter ATP-binding protein YP_001362722.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_4664 oligopeptide/dipeptide ABC transporter, ATP-binding protein YP_001362721.1 KEGG: sma:SAV6870 hypothetical protein YP_001362720.1 PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; KEGG: aau:AAur_2262 guanylate kinase YP_001362719.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001362718.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: sco:SCO1477 flavoprotein homologue (partial) YP_001362717.1 PFAM: S-adenosylmethionine synthetase; KEGG: sma:SAV6874 S-adenosylmethionine synthetase YP_001362716.1 KEGG: fal:FRAAL5226 primosomal protein N' (replication factor Y) YP_001362715.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3949 aldo/keto reductase YP_001362713.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001362712.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sco:SCO1473 methionyl-tRNA formyltransferase YP_001362711.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: art:Arth_1672 Fmu (Sun) domain protein YP_001362710.1 KEGG: art:Arth_0900 PEP phosphonomutase YP_001362709.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nca:Noca_1980 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001362708.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: aau:AAur_1824 ribulose-phosphate 3-epimerase YP_001362707.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: rha:RHA1_ro07169 riboflavin synthase alpha subunit YP_001362706.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: pac:PPA1750 riboflavin biosynthesis protein RibA YP_001362705.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: sma:SAV6905 riboflavin synthase beta subunit YP_001362704.1 PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tfu:Tfu_0175 phosphoribosyl-ATP pyrophosphatase YP_001362703.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001362702.1 KEGG: tfu:Tfu_1082 hypothetical protein YP_001362701.1 KEGG: fal:FRAAL4224 hypothetical protein YP_001362700.1 KEGG: sco:SCO4186 hypothetical protein YP_001362699.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: sma:SAV6160 cyclase YP_001362698.1 KEGG: nfa:nfa38650 hypothetical protein YP_001362697.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: art:Arth_1683 phosphoribosyl-AMP cyclohydrolase YP_001362696.1 KEGG: sma:SAV6172 hypothetical protein YP_001362695.1 KEGG: lxx:Lxx11270 mambrane protein YP_001362694.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: sco:SCO2039 indoleglycerol phosphate synthase YP_001362693.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001362692.1 TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: tfu:Tfu_1166 tryptophan synthase, alpha chain YP_001362691.1 PFAM: DSBA oxidoreductase; KEGG: pac:PPA1567 hypothetical protein YP_001362690.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: art:Arth_4457 prolipoprotein diacylglyceryl transferase YP_001362689.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin) YP_001362688.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_1843 NADH/NADPH dependent glutamate synthases, small subunit YP_001362687.1 TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; KEGG: art:Arth_1693 pyruvate kinase YP_001362686.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: aau:AAur_1845 two-component system response regulator YP_001362685.1 PFAM: extracellular ligand-binding receptor; KEGG: msm:MSMEG_3247 branched-chain amino acid ABC transporter substrate-binding protein YP_001362684.1 PFAM: inner-membrane translocator; KEGG: nfa:nfa18720 branched-chain amino acid transporter permease protein YP_001362683.1 PFAM: inner-membrane translocator; KEGG: nfa:nfa18730 branched-chain amino acid transporter component YP_001362682.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa18740 branched-chain amino acid transporter ATP-binding protein YP_001362681.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa18740 branched-chain amino acid transporter ATP-binding protein YP_001362680.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1087 GCN5-related N-acetyltransferase YP_001362679.1 KEGG: nca:Noca_3006 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2 YP_001362678.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase YP_001362677.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: sma:SAV6232 SAM-dependent methyltransferase YP_001362676.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001362675.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0219 transcriptional regulator, LacI family YP_001362674.1 KEGG: aau:AAur_0531 sugar ABC transporter YP_001362673.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_0532 sugar ABC transporter, ATP-binding protein YP_001362672.1 PFAM: inner-membrane translocator; KEGG: msm:MSMEG_1706 xylose transport system permease protein XylH YP_001362671.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; in Mycobacterium tuberculosis the C-terminal UPF0157 domain appears to be necessary for proper folding of the N-terminal domain YP_001362670.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001362669.1 PFAM: regulatory protein MarR; KEGG: ace:Acel_0531 transcriptional regulator, MarR family YP_001362668.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001362667.1 KEGG: sus:Acid_4341 hypothetical protein YP_001362666.1 KEGG: aeh:Mlg_0141 glycosyl transferase, group 1 YP_001362665.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: gvi:glr4245 hypothetical protein YP_001362664.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: lxx:Lxx21100 UDP-N-acetylglucosamine 2-epimerase YP_001362663.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001362662.1 PFAM: uncharacterised P-loop ATPase protein UPF0042; KEGG: fal:FRAAL4592 kinase YP_001362661.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: ace:Acel_1112 hypothetical protein YP_001362660.1 PFAM: protein of unknown function DUF199; KEGG: sma:SAV6294 sporulation regulatory protein YP_001362659.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: art:Arth_2087 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001362658.1 PFAM: phosphoglycerate kinase; KEGG: nca:Noca_2531 phosphoglycerate kinase YP_001362657.1 PFAM: triosephosphate isomerase; KEGG: nca:Noca_2532 triose-phosphate isomerase YP_001362656.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: lxx:Lxx11550 protein-export membrane protein SecG YP_001362655.1 KEGG: sco:SCO1943 electron transport protein YP_001362654.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: sco:SCO1939 6-phosphogluconolactonase YP_001362653.1 TIGRFAM: OpcA protein; KEGG: art:Arth_2093 oxppcycle protein YP_001362652.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001362651.1 TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: tfu:Tfu_2003 transaldolase subfamily YP_001362650.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001362649.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: lxx:Lxx11630 protoheme IX farnesyltransferase YP_001362648.1 PFAM: ABC transporter; KEGG: art:Arth_2100 ABC transporter YP_001362647.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_1989 ABC-type multidrug transport system ATPase componen YP_001362646.1 KEGG: tfu:Tfu_1988 DNA-binding protein YP_001362645.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein YP_001362644.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: art:Arth_2104 FeS assembly protein SufD YP_001362643.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO1922 ABC transporter ATP-binding subunit YP_001362642.1 PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 protein of unknown function DUF59 YP_001362641.1 PFAM: cobalt transport protein; KEGG: nca:Noca_3351 cobalt transport protein YP_001362640.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mva:Mvan_3227 ABC transporter-related protein YP_001362639.1 PFAM: BioY protein; KEGG: art:Arth_2113 BioY protein YP_001362638.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aau:AAur_2115 ABC transporter, ATP-binding protein YP_001362637.1 KEGG: sma:SAV6427 transcriptional regulator YP_001362636.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO1831 oxidoreductase YP_001362635.1 KEGG: art:Arth_2116 hypothetical protein YP_001362634.1 KEGG: sma:SAV6456 hypothetical protein YP_001362633.1 KEGG: nca:Noca_2569 hypothetical protein YP_001362632.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_2119 3-oxoacyl-(acyl-carrier-protein) reductase YP_001362631.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: nca:Noca_2574 phosphoserine phosphatase SerB YP_001362630.1 KEGG: mva:Mvan_6045 conserved hypothetical protein YP_001362629.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001362628.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: nca:Noca_3718 glycogen synthase YP_001362626.1 KEGG: nca:Noca_2575 hypothetical protein YP_001362625.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nca:Noca_2576 ABC transporter YP_001362623.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sco:SCO3385 L-allo-threonine aldolase YP_001362622.1 PFAM: regulatory protein MarR; KEGG: nfa:nfa43350 transcriptional regulator YP_001362621.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rfr:Rfer_2534 NADP oxidoreductase, coenzyme F420-dependent YP_001362620.1 KEGG: sma:SAV489 hypothetical protein YP_001362619.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: lxx:Lxx18070 signal peptidase I YP_001362617.1 PFAM: helix-turn-helix domain protein; KEGG: eli:ELI_14440 transcriptional regulator YP_001362616.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3779 major facilitator superfamily MFS_1 YP_001362615.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sco:SCO2171 secreted protease YP_001362614.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: sco:SCO0590 oxidoreductase YP_001362613.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2967 hypothetical protein YP_001362612.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: art:Arth_0490 3-oxoacid CoA-transferase, B subunit YP_001362610.1 KEGG: rru:Rru_A3092 parallel beta-helix repeat YP_001362609.1 PFAM: phytase; KEGG: gvi:gll2099 probable phytase YP_001362608.1 PFAM: PaaX domain protein domain; KEGG: mul:MUL_0755 conserved hypothetical regulatory protein YP_001362607.1 PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_3325 GCN5-related N-acetyltransferase YP_001362606.1 KEGG: lwe:lwe1084 hydrolase family protein YP_001362605.1 KEGG: pac:PPA2046 hypothetical protein YP_001362604.1 KEGG: sco:SCO3869 WD-40 repeat protein YP_001362602.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: aba:Acid345_0624 hypothetical protein YP_001362601.1 KEGG: tfu:Tfu_1509 hypothetical protein YP_001362600.1 PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: sco:SCO7527 DeoR-family transcriptional regulator YP_001362599.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: sco:SCO7528 conserved hypothetical protein SC8G12.04. YP_001362598.1 KEGG: art:Arth_2884 hypothetical protein YP_001362597.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rha:RHA1_ro02331 sigma factor, sigma 70 type, group 4 YP_001362596.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: msm:MSMEG_4316 methylated-DNA--protein-cysteine methyltransferase YP_001362595.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: sit:TM1040_0283 NAD-dependent epimerase/dehydratase YP_001362594.1 PFAM: regulatory protein MarR; protein of unknown function UPF0074; KEGG: xcb:XC_0601 transcriptional regulator MarR family YP_001362593.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: fal:FRAAL1886 membrane transport protein YP_001362592.1 PFAM: ATPase AAA; ATPase activities AAA_5; SMART: AAA ATPase; KEGG: art:Arth_1867 AAA ATPase, central domain protein YP_001362591.1 KEGG: mtp:Mthe_0684 carbonate dehydratase YP_001362589.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: msm:MSMEG_0284 ribosyldihydronicotinamide dehydrogenase (quinone) YP_001362588.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mkm:Mkms_5240 helix-turn-helix-domain containing protein, AraC type YP_001362587.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: gbe:GbCGDNIH1_1778 hypothetical cytosolic protein YP_001362586.1 PFAM: regulatory protein MarR; KEGG: fra:Francci3_0630 transcriptional regulator, MarR family YP_001362585.1 PFAM: alpha/beta hydrolase fold; epoxide hydrolase; KEGG: gbe:GbCGDNIH1_1779 epoxide hydrolase YP_001362584.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gka:GK1465 hypothetical protein YP_001362581.1 KEGG: pen:PSEEN1732 hypothetical protein YP_001362580.1 PFAM: integrase catalytic region; KEGG: msm:MSMEG_1249 ISMsm7, transposase orfB YP_001362579.1 PFAM: transposase IS3/IS911 family protein; KEGG: msm:MSMEG_1250 ISMsm7, transposase orfA YP_001362577.1 PFAM: transposase IS3/IS911 family protein; KEGG: mbb:BCG_2833c transposase YP_001362571.1 PFAM: OmpA/MotB domain protein; KEGG: tfu:Tfu_2281 similar to outer membrane protein and related peptidoglycan-associated (LipO)proteins YP_001362566.1 KEGG: pfo:Pfl_3053 hypothetical protein YP_001362564.1 KEGG: ace:Acel_1350 hypothetical protein YP_001362560.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO5549 hydrolase YP_001362558.1 PFAM: DGPFAETKE family protein; KEGG: sit:TM1040_3855 hypothetical protein YP_001362556.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV5974 LysR-family transcriptional regulator YP_001362555.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sco:SCO1704 integral membrane conserved hypothetical protein YP_001362554.1 PFAM: endoribonuclease L-PSP; KEGG: mxa:MXAN_3152 endoribonuclease L-PSP family protein YP_001362553.1 KEGG: ptr:747326 hypothetical protein LOC747326 YP_001362552.1 KEGG: bca:BCE_2619 hypothetical protein YP_001362550.1 PFAM: transcriptional regulator PadR family protein; KEGG: pac:PPA1635 transcriptional regulator, PadR family YP_001362548.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_0197 short-chain dehydrogenase/reductase SDR YP_001362547.1 PFAM: regulatory protein TetR; KEGG: mva:Mvan_1492 transcriptional regulator, TetR family YP_001362546.1 KEGG: nca:Noca_2561 hypothetical protein YP_001362544.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro00242 possible 3-oxoacyl-[acyl-carrier-protein] reductase YP_001362543.1 PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: art:Arth_2198 naringenin-chalcone synthase YP_001362542.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2197 methyltransferase type 12 YP_001362541.1 PFAM: monooxygenase FAD-binding; KEGG: art:Arth_2196 monooxygenase, FAD-binding YP_001362540.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06364 probable cyanate transporter, MFS superfamily YP_001362539.1 PFAM: histone family protein DNA-binding protein; KEGG: nfa:nfa42100 histone-like DNA-binding protein YP_001362538.1 SMART: helix-turn-helix domain protein; KEGG: msm:MSMEG_0523 DNA-binding protein YP_001362536.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO2143 two component system response regulator YP_001362535.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nca:Noca_2007 ATP-binding region, ATPase domain protein domain protein YP_001362534.1 KEGG: ani:AN8715.2 hypothetical protein YP_001362533.1 KEGG: ana:all5196 hypothetical protein YP_001362532.1 PFAM: glycosyl transferase group 1; KEGG: ana:all5195 glycosyltransferase YP_001362531.1 PFAM: glycosyl transferase group 1; KEGG: ana:all5194 glycosyltransferase YP_001362530.1 PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: AAA ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter YP_001362529.1 KEGG: tfu:Tfu_2431 hypothetical protein YP_001362528.1 PFAM: aminoglycoside phosphotransferase YP_001362526.1 KEGG: lxx:Lxx21810 hypothetical protein YP_001362525.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_4637 GCN5-related N-acetyltransferase YP_001362524.1 PFAM: regulatory protein TetR; KEGG: sco:SCO0241 transcriptional regulator YP_001362523.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mbb:BCG_0099 oxidoreductase YP_001362521.1 PFAM: Clp domain protein YP_001362520.1 KEGG: sma:SAV2979 hypothetical protein YP_001362519.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: syd:Syncc9605_1294 phosphonate-binding periplasmic protein YP_001362518.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: pst:PSPTO_0790 phosphonate ABC transporter, ATP-binding protein YP_001362517.1 PFAM: ABC transporter inner membrane protein; KEGG: ade:Adeh_0456 ABC phosphonate transporter, fused inner membrane subunits YP_001362516.1 PFAM: thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein YP_001362515.1 PFAM: Patatin; KEGG: nca:Noca_2085 patatin YP_001362514.1 TIGRFAM: alcohol dehydrogenase. zinc-binding type 1; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_5164 zinc-binding alcohol dehydrogenase family protein YP_001362513.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cac:CAC3484 short-chain alcohol dehydrogenase family protein YP_001362512.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5797 tetracenomycin C resistance and export protein YP_001362511.1 PFAM: regulatory protein MarR; KEGG: cac:CAC3485 transcriptional regulator, MarR/EmrR family YP_001362510.1 PFAM: 5'-Nucleotidase domain protein; KEGG: cyb:CYB_0274 5'-nucleotidase domain/Ser/Thr protein phosphatase family protein YP_001362509.1 PFAM: peptidase S41; KEGG: sus:Acid_2375 peptidase S41 YP_001362503.1 KEGG: art:Arth_4398 hypothetical protein YP_001362502.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5934 sigma factor YP_001362497.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mag:amb3617 hypothetical protein YddU YP_001362496.1 PFAM: glutaredoxin; KEGG: lxx:Lxx07480 glutaredoxin YP_001362495.1 PFAM: Domain of unknown function DUF1801; KEGG: mxa:MXAN_1652 hypothetical protein YP_001362494.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: tfu:Tfu_1658 tyrosine protein kinase:serine/threonine protein kinase:Sel1-like repeat YP_001362493.1 PFAM: glutathionylspermidine synthase; KEGG: sma:SAV3421 glutathionylspermidine synthase YP_001362492.1 PFAM: protein of unknown function DUF350; KEGG: nfa:nfa34930 hypothetical protein YP_001362491.1 PFAM: DGPFAETKE family protein; KEGG: hypothetical protein YP_001362490.1 PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV4746 phosphotransferase YP_001362488.1 PFAM: NodS family protein; methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO2653 hypothetical protein YP_001362487.1 PFAM: protein of unknown function UPF0157; KEGG: sco:SCO7215 conserved hypothetical protein YP_001362486.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: hch:HCH_01003 probable mercuric reductase YP_001362485.1 PFAM: extracellular solute-binding protein family 5; KEGG: cef:CE2334 peptide binding protein YP_001362484.1 PFAM: ABC transporter inner membrane protein; KEGG: cef:CE2333 transport protein YP_001362483.1 PFAM: ABC transporter inner membrane protein; KEGG: cef:CE2332 transport protein YP_001362482.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cef:CE2331 ABC transporter ATP-binding protein YP_001362481.1 PFAM: luciferase family protein; KEGG: pde:Pden_4901 luciferase family protein YP_001362480.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: cef:CE2330 hypothetical protein YP_001362479.1 KEGG: cef:CE0176 hypothetical protein YP_001362478.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_3028 transcriptional regulator, TetR family YP_001362477.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase YP_001362476.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; periplasmic binding protein/LacI transcriptional regulator; KEGG: pca:Pcar_0095 sensory transduction system, regulatory protein YP_001362475.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psb:Psyr_3545 short-chain dehydrogenase/reductase SDR YP_001362474.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rha:RHA1_ro00241 transcriptional regulator, AraC family YP_001362473.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: fal:FRAAL2468 esterase YP_001362472.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mes:Meso_4018 antibiotic biosynthesis monooxygenase YP_001362471.1 PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: mva:Mvan_3507 transcriptional regulator, MerR family YP_001362470.1 KEGG: mva:Mvan_3509 conserved hypothetical protein YP_001362469.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_0283 3-oxoacyl-[acyl-carrier-protein] reductase YP_001362467.1 KEGG: cel:Y25C1A.3 Y25C1A.3 YP_001362466.1 KEGG: sco:SCO7132 hypothetical protein YP_001362465.1 PFAM: regulatory protein LuxR; KEGG: sco:SCO7173 transcriptional regulator YP_001362464.1 PFAM: alpha/beta hydrolase fold; KEGG: abo:ABO_2645 hydrolase, alpha/beta hydrolase fold family YP_001362463.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rha:RHA1_ro08967 dehydrogenase YP_001362462.1 PFAM: isochorismatase hydrolase; KEGG: aau:AAur_pTC20200 isochorismatase family protein YP_001362461.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: nfa:nfa5050 transcriptional regulator YP_001362460.1 PFAM: peptidase M6 immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A YP_001362459.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sco:SCO1455 hydrolase YP_001362458.1 PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_1508 amino acid permease-associated region YP_001362456.1 KEGG: xfa:XF1765 drug:proton antiporter YP_001362455.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1194 MFS transporter, DHA1 family YP_001362454.1 SMART: helix-turn-helix domain protein; KEGG: aau:AAur_2039 transcriptional regulator YP_001362453.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ace:Acel_1473 alcohol dehydrogenase, zinc-binding domain protein YP_001362452.1 PFAM: cupin; KEGG: rha:RHA1_ro00566 hypothetical protein YP_001362451.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_2040 NADP-dependent alcohol dehydrogenase YP_001362450.1 KEGG: bja:blr6531 hypothetical protein YP_001362449.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro02809 probable L-iditol 2-dehydrogenase YP_001362448.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3604 sorbitol utilization protein SOU2 YP_001362447.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psb:Psyr_4811 helix-turn-helix, AraC type YP_001362445.1 PFAM: aldo/keto reductase; KEGG: mes:Meso_3900 aldo/keto reductase YP_001362444.1 PFAM: aldo/keto reductase; KEGG: dge:Dgeo_0160 aldo/keto reductase YP_001362443.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL3853 TetR transcriptional regulator YP_001362442.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: tfu:Tfu_1854 regulatory protein, DeoR YP_001362441.1 PFAM: regulatory protein LacI; KEGG: aau:AAur_3708 transcriptional regulator, LacI family YP_001362440.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter YP_001362439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cgb:cg0389 short chain dehydrogenase YP_001362438.1 PFAM: regulatory protein DeoR; hypothetical protein; regulatory protein DeoR; KEGG: sco:SCO0282 DeoR family transcriptional regulator YP_001362437.1 PFAM: LGFP repeat protein; KEGG: rha:RHA1_ro04060 probable antigen 85 complex protein YP_001362436.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_B0517 Zn-dependent alcohol dehydrogenase YP_001362435.1 KEGG: sco:SCO1035 hypothetical protein YP_001362434.1 PFAM: major facilitator superfamily MFS_1; KEGG: mva:Mvan_5329 major facilitator superfamily MFS_1 YP_001362433.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO0280 hypothetical protein YP_001362432.1 PFAM: carbonic anhydrase; KEGG: gvi:glr0945 carbonate dehydratase YP_001362430.1 KEGG: cgb:cg3213 secreted protein YP_001362429.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PE00323 hypothetical protein YP_001362428.1 KEGG: sco:SCO7631 secreted protein YP_001362427.1 PFAM: protein of unknown function DUF1470; KEGG: sco:SCO3054 hypothetical protein YP_001362426.1 PFAM: alpha/beta hydrolase fold; epoxide hydrolase; KEGG: bch:Bcen2424_4307 epoxide hydrolase domain protein YP_001362425.1 KEGG: fal:FRAAL5461 epoxide hydratase YP_001362424.1 KEGG: mmu:668240 predicted gene, EG668240 YP_001362423.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xcv:XCV0323 hypothetical protein YP_001362422.1 PFAM: regulatory protein TetR; KEGG: fal:FRAAL4751 TetR family transcriptional regulator YP_001362421.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: reh:H16_A1840 dihydrofolate reductase YP_001362418.1 KEGG: sma:SAV5781 hypothetical protein YP_001362417.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sco:SCO1410 GntR-family transcriptional regulator YP_001362416.1 KEGG: hch:HCH_01581 hypothetical protein YP_001362413.1 TIGRFAM: death-on-curing family protein; PFAM: death-on-curing protein; KEGG: mav:MAV_3971 death-on-curing protein YP_001362412.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: fra:Francci3_1090 hypothetical protein YP_001362411.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro00454 possible conserved polyketide synthesis monooxygenase YP_001362410.1 KEGG: rha:RHA1_ro04125 hypothetical protein YP_001362406.1 PFAM: periplasmic binding protein; KEGG: cgb:cg1418 ABC-type cobalamin/Fe3+-siderophores transport system secreted component YP_001362405.1 PFAM: endoribonuclease L-PSP; KEGG: rha:RHA1_ro07122 possible translation initiation inhibitor, YjgF family YP_001362404.1 KEGG: mva:Mvan_1260 DNA-binding protein YP_001362403.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: bja:bll4989 esterase YP_001362402.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fal:FRAAL3904 hypothetical protein YP_001362400.1 PFAM: diacylglycerol kinase catalytic region; KEGG: lxx:Lxx21980 hypothetical protein YP_001362398.1 PFAM: MMPL domain protein; KEGG: sco:SCO5502 integral membrane export protein YP_001362397.1 KEGG: rha:RHA1_ro06877 hypothetical protein YP_001362396.1 KEGG: tfu:Tfu_0953 hypothetical protein YP_001362395.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sma:SAV6038 two-component system sensor kinase YP_001362394.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sco:SCO2165 two component system response regulator YP_001362393.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: pac:PPA1035 lipase YP_001362391.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: fal:FRAAL6795 oxidoreductase YP_001362390.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: nca:Noca_2052 NADP oxidoreductase, coenzyme F420-dependent YP_001362389.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: nca:Noca_4003 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_001362388.1 KEGG: nca:Noca_2193 DoxX family protein YP_001362387.1 PFAM: regulatory protein MarR; KEGG: cef:CE2405 transcription factor YP_001362384.1 PFAM: beta-lactamase domain protein; KEGG: sao:SAOUHSC_02936 hypothetical protein YP_001362383.1 PFAM: regulatory protein LacI; regulatory protein TetR; KEGG: mva:Mvan_1059 transcriptional regulator, TetR family YP_001362380.1 KEGG: fal:FRAAL3674 kinase YP_001362377.1 PFAM: phosphoglycerate mutase; KEGG: sme:SMc00413 hypothetical protein YP_001362375.1 KEGG: sde:Sde_1843 hypothetical protein YP_001362374.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa19730 hypothetical protein YP_001362373.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: tfu:Tfu_1487 lipase/esterase YP_001362370.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV6450 hypothetical protein YP_001362367.1 KEGG: sma:SAV1812 hypothetical protein YP_001362366.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: regulatory protein LuxR; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_001362363.1 PFAM: protein of unknown function UPF0074; regulatory protein DeoR; hypothetical protein; KEGG: sco:SCO7527 DeoR-family transcriptional regulator YP_001362362.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1285 monooxygenase, FAD-binding protein YP_001362361.1 PFAM: beta-lactamase; KEGG: nfa:nfa13570 peptidase YP_001362360.1 PFAM: protein of unknown function DUF1648; KEGG: cte:CT1237 hypothetical protein YP_001362358.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO4271 NADP-dependent alcohol dehydrogenase YP_001362356.1 PFAM: regulatory protein TetR; KEGG: sco:SCO4270 transcriptional regulator YP_001362355.1 KEGG: rha:RHA1_ro03341 hypothetical protein YP_001362352.1 KEGG: rha:RHA1_ro08483 hypothetical protein YP_001362351.1 PFAM: protein of unknown function DUF1016; KEGG: rha:RHA1_ro08488 hypothetical protein YP_001362347.1 KEGG: bpm:BURPS1710b_A0286 polyphosphate kinase 2 family YP_001362346.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sma:SAV492 enoyl-CoA hydratase YP_001362345.1 PFAM: helix-turn-helix HxlR type; KEGG: sma:SAV491 transcriptional regulator YP_001362342.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL2293 ABC transporter, permease protein YP_001362341.1 PFAM: regulatory protein TetR; KEGG: sma:SAV448 TetR-family transcriptional regulator YP_001362338.1 PFAM: Abortive infection protein; KEGG: sco:SCO6138 transmembrane protein YP_001362337.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO6139 sensor kinase YP_001362336.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO6140 two-component system response regulator YP_001362335.1 KEGG: mva:Mvan_5917 transcriptional regulator, TetR family YP_001362334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7566 oxidoreductase YP_001362333.1 KEGG: nfa:nfa34980 hypothetical protein YP_001362332.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: mka:MK0724 nucleoside-diphosphate-sugar epimerase YP_001362331.1 PFAM: regulatory protein MarR; KEGG: fal:FRAAL1131 MarR-family transcriptional regulator YP_001362330.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: fal:FRAAL4821 transcriptional regulator YP_001362329.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04104 probable thioredoxin-disulfide reductase YP_001362328.1 PFAM: thiopurine S-methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_0430 methyltransferase type 12 YP_001362327.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO0511 dehydrogenase (secreted protein) YP_001362325.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rha:RHA1_ro05772 hypothetical protein YP_001362322.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO1066 LacI-family transcriptional regulator YP_001362320.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3251 extracellular sugar-binding protein YP_001362319.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_5204 oxidoreductase, short chain dehydrogenase/reductase family protein YP_001362318.1 SMART: helix-turn-helix domain protein; KEGG: msm:MSMEG_0523 DNA-binding protein YP_001362317.1 PFAM: oxidoreductase domain protein; KEGG: art:Arth_3384 oxidoreductase domain protein YP_001362316.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_2212 short chain dehydrogenase YP_001362315.1 KEGG: mva:Mvan_2125 conserved integral membrane alanine and leucine rich protein YP_001362314.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO0233 DNA-binding protein YP_001362313.1 PFAM: regulatory protein TetR; KEGG: mkm:Mkms_1574 transcriptional regulator, TetR family YP_001362312.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_1575 short-chain dehydrogenase/reductase SDR YP_001362311.1 PFAM: regulatory protein TetR; KEGG: nfa:nfa44560 transcriptional regulator YP_001362310.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sco:SCO0965 hypothetical protein YP_001362307.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dra:DR0763 hypothetical protein YP_001362303.1 KEGG: pac:PPA0003 hypothetical protein YP_001362300.1 KEGG: aau:AAur_pTC10201 hypothetical protein YP_001362296.1 PFAM: protein of unknown function DUF1016; KEGG: lxx:Lxx22350 hypothetical protein YP_001362295.1 KEGG: tth:TTC1429 hypothetical protein YP_001362294.1 KEGG: sat:SYN_01844 hypothetical cytosolic protein YP_001362293.1 PFAM: metallophosphoesterase; KEGG: rxy:Rxyl_0449 metallophosphoesterase YP_001362292.1 PFAM: SMC domain protein; KEGG: rxy:Rxyl_0448 SMC protein-like protein YP_001362291.1 PFAM: plasmid encoded RepA protein; KEGG: ppd:Ppro_3841 plasmid encoded RepA protein YP_001362290.1 KEGG: mmu:667734 similar to mucin 19 YP_001362288.1 PFAM: protein of unknown function UPF0187; KEGG: xcc:XCC3288 hypothetical protein YP_001362287.1 PFAM: glycoside hydrolase family 10; KEGG: ani:AN2356.2 hypothetical protein YP_001362285.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_3028 transcriptional regulator, TetR family YP_001362284.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 multiple sugar transport system substrate-binding protein YP_001362283.1 PFAM: ABC transporter inner membrane protein; KEGG: bcl:ABC0317 sugar ABC transporter permease YP_001362282.1 PFAM: ABC transporter inner membrane protein; KEGG: bcl:ABC3776 sugar ABC transporter permease YP_001362280.1 PFAM: xylose isomerase domain protein TIM barrel; KEGG: art:Arth_0574 xylose isomerase domain protein TIM barrel YP_001362279.1 PFAM: oxidoreductase domain protein; oxidoreductase; homoserine dehydrogenase NAD-binding; KEGG: art:Arth_0573 oxidoreductase domain protein YP_001362278.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: vei:Veis_0942 glycoside hydrolase, family 3 domain protein YP_001362277.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO2166 two component sensor kinase YP_001362276.1 TIGRFAM: RNA polymerase sigma-70; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: nfa:nfa4180 two-component system response regulator YP_001362275.1 KEGG: sco:SCO3166 membrane transport protein YP_001362274.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_1297 drug resistance transporter, EmrB/QacA subfamily YP_001362273.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1836 major facilitator superfamily MFS_1 YP_001362272.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: art:Arth_1838 alpha-L-rhamnosidase YP_001362271.1 PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase YP_001362270.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: vei:Veis_0942 glycoside hydrolase, family 3 domain protein YP_001362269.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: art:Arth_1839 glycoside hydrolase, family 3 domain protein YP_001362268.1 PFAM: regulatory protein LacI; KEGG: mpa:MAP4300 hypothetical protein YP_001362267.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1836 major facilitator superfamily MFS_1 YP_001362266.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_4901 glycoside hydrolase family 2, sugar binding YP_001362265.1 PFAM: glycoside hydrolase family 1; KEGG: bad:BAD_1287 beta-glucosidase YP_001362264.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: mkm:Mkms_0313 short-chain dehydrogenase/reductase SDR YP_001362263.1 PFAM: cytochrome P450; KEGG: fra:Francci3_1599 cytochrome P450 YP_001362262.1 KEGG: mva:Mvan_4235 ferredoxin YP_001362261.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL4010 ferredoxin reductase YP_001362259.1 PFAM: glycoside hydrolase family 35; KEGG: afm:Afu5g00670 glycosyl hydrolase family 35 YP_001362258.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: lxx:Lxx09600 two-component system, sensor protein YP_001362257.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: lxx:Lxx09610 two-component system, regulatory protein YP_001362256.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: lxx:Lxx09620 hypothetical protein YP_001362254.1 PFAM: restriction endonuclease; KEGG: sma:SAV1059 hypothetical protein YP_001362248.1 KEGG: nfa:nfa21300 hypothetical protein YP_001362246.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_2212 short chain dehydrogenase YP_001362245.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gvi:gll4203 probable dehydrogenase/reductase YP_001362242.1 PFAM: condensation domain protein; KEGG: msm:MSMEG_4963 peptide synthetase ScpsB YP_001362241.1 KEGG: sus:Acid_5181 translation initiation factor IF-2 YP_001362240.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2013 oxidoreductase, short chain dehydrogenase/reductase family protein YP_001362239.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sco:SCO1010 integral membrane transport protein YP_001362238.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001362237.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pol:Bpro_5109 transcriptional regulator, LacI family YP_001362236.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro06735 probable alcohol dehydrogenase, Zn-containing YP_001362235.1 KEGG: ppd:Ppro_3841 plasmid encoded RepA protein YP_001362234.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV7211 acetyltransferase YP_001362233.1 PFAM: amidohydrolase 2; KEGG: pst:PSPTO_3758 hypothetical protein YP_001362232.1 TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mul:MUL_5025 S-adenosylmethionine:2-demethylmenaquinone methyltransferase, MenG YP_001362230.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_1028 transcriptional regulator, GntR family YP_001362229.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: ppu:PP_2057 citrate transporter YP_001362228.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rha:RHA1_ro00984 3-isopropylmalate dehydrogenase YP_001362227.1 PFAM: Asp/Glu racemase; KEGG: bja:bll2908 hypothetical protein YP_001362226.1 PFAM: type III effector Hrp-dependent outers; KEGG: rfr:Rfer_0445 type III effector Hrp-dependent outers YP_001362225.1 PFAM: class II aldolase/adducin family protein; KEGG: pde:Pden_3382 class II aldolase/adducin family protein YP_001362224.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro00663 possible universal stress protein YP_001362223.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001362222.1 KEGG: cfa:476752 similar to transcription elongation factor B polypeptide 3 binding protein 1 YP_001362221.1 KEGG: nca:Noca_1789 secreted protein YP_001362219.1 PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_1320 transcriptional regulator, TetR family YP_001362218.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01063 multidrug transporter, Dha2 family of MFS superfamily YP_001362217.1 PFAM: sodium/hydrogen exchanger; KEGG: msm:MSMEG_5825 Na+/H+ antiporter YP_001362216.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: sma:SAV6029 integral membrane protein YP_001362215.1 PFAM: hypothetical protein; KEGG: sco:SCO6379 hypothetical protein YP_001362212.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: msm:MSMEG_2035 amine oxidase [flavin-containing] B YP_001362211.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mkm:Mkms_2407 monooxygenase, FAD-binding YP_001362210.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO7362 oxidoreductase YP_001362208.1 KEGG: rha:RHA1_ro05019 hypothetical protein YP_001362207.1 PFAM: helix-turn-helix domain protein; KEGG: mva:Mvan_4879 transcriptional regulator, XRE family YP_001362206.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mll6686 probable short-chain dehydrogenase YP_001362200.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer YP_001362199.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: art:Arth_3170 GAF sensor protein YP_001362198.1 PFAM: transposase IS3/IS911 family protein; KEGG: mbb:BCG_2833c transposase YP_001362197.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: mva:Mvan_2109 diguanylate cyclase with PAS/PAC sensor YP_001362196.1 PFAM: PAS fold-3 domain protein; KEGG: cyb:CYB_2795 sensory box histidine kinase YP_001362195.1 PFAM: regulatory protein LuxR; hypothetical protein; KEGG: pol:Bpro_3193 transcriptional regulator, LuxR family YP_001362194.1 KEGG: cef:CE2632 hypothetical protein YP_001362193.1 TIGRFAM: peptidase S26B, signal peptidase; KEGG: cef:CE2634 signal peptidase I YP_001362192.1 KEGG: syw:SYNW2303 hypothetical protein YP_001362191.1 KEGG: mag:amb3790 large exoprotein involved in heme utilization or adhesion YP_001362190.1 KEGG: spu:576916 hypothetical LOC576916 YP_001362187.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:bll0882 hypothetical protein YP_001362186.1 KEGG: sco:SCO0682 hypothetical protein YP_001362185.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sth:STH1699 hypothetical protein YP_001362184.1 PFAM: EAL domain protein; KEGG: fal:FRAAL5844 hypothetical protein; signal peptide YP_001362183.1 KEGG: fal:FRAAL5845 hypothetical protein YP_001362182.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; periplasmic binding protein/LacI transcriptional regulator; KEGG: cvi:CV0046 PleD gene product YP_001362181.1 PFAM: GAF domain protein; KEGG: mxa:MXAN_4257 response regulator YP_001362180.1 KEGG: rha:RHA1_ro05891 hypothetical protein YP_001362179.1 KEGG: aau:AAur_4106 hypothetical protein YP_001362178.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_001362177.1 KEGG: sco:SCO7732 hypothetical protein YP_001362175.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: fal:FRAAL3312 hypothetical protein YP_001362172.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pst:PSPTO_2405 xenobiotic reductase A YP_001362171.1 PFAM: alpha/beta hydrolase fold; KEGG: mpa:MAP3537c BpoC_1 YP_001362168.1 KEGG: sma:SAV2847 hypothetical protein YP_001362167.1 KEGG: sma:SAV2846 hypothetical protein YP_001362164.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lil:LA1359 hypothetical protein YP_001362161.1 PFAM: regulatory protein MerR; KEGG: sco:SCO5025 transcriptional regulator YP_001362158.1 KEGG: aau:AAur_0041 hypothetical protein YP_001362157.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aau:AAur_0040 RNA polymerase sigma (70) factor YP_001362153.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL4755 membrane phosphatase YP_001362151.1 KEGG: dra:DR1912 protein-tyrosine phosphatase YP_001362150.1 KEGG: gvi:gll1194 hypothetical protein YP_001362149.1 PFAM: NmrA family protein; KEGG: mlo:mlr3941 hypothetical protein YP_001362148.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fal:FRAAL1790 HTH-type transcriptional regulator YP_001362147.1 KEGG: dsy:DSY0426 hypothetical protein YP_001362140.1 PFAM: integrase catalytic region; KEGG: msm:MSMEG_1249 ISMsm7, transposase orfB YP_001362139.1 PFAM: transposase IS3/IS911 family protein; KEGG: msm:MSMEG_1250 ISMsm7, transposase orfA YP_001362135.1 PFAM: ThiJ/PfpI domain protein; KEGG: pfl:PFL_4109 ThiJ/PfpI family protein YP_001362134.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sco:SCO5680 cytidine deaminase YP_001362127.1 KEGG: mmu:667708 predicted gene, EG667708 YP_001362126.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5934 sigma factor YP_001362124.1 KEGG: art:Arth_0701 hypothetical protein YP_001362119.1 KEGG: rha:RHA1_ro08293 hypothetical protein YP_001362118.1 KEGG: sma:SAV6912 hypothetical protein YP_001362117.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein YP_001362112.1 KEGG: plu:plu2454 hypothetical protein YP_001362111.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_1494 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001362106.1 KEGG: sco:SCO0901 hypothetical protein YP_001362104.1 PFAM: aminoglycoside phosphotransferase; KEGG: rpc:RPC_0130 aminoglycoside phosphotransferase YP_001362103.1 KEGG: btl:BALH_2750 hypothetical protein YP_001362100.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: fal:FRAAL1886 membrane transport protein YP_001362099.1 PFAM: regulatory protein MarR; protein of unknown function UPF0074; KEGG: xcb:XC_0601 transcriptional regulator MarR family YP_001362096.1 PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein YP_001362095.1 PFAM: aminoglycoside phosphotransferase; KEGG: sme:SMc04360 hypothetical protein YP_001362094.1 PFAM: pentapeptide repeat protein; KEGG: cya:CYA_0418 pentapeptide repeat family protein YP_001362093.1 PFAM: protein of unknown function UPF0157; KEGG: mma:MM0450 hypothetical protein YP_001362092.1 KEGG: sma:SAV3241 hypothetical protein YP_001362091.1 KEGG: sma:SAV3241 hypothetical protein YP_001362090.1 PFAM: NUDIX hydrolase; KEGG: eca:ECA2974 MutT-like protein YP_001362089.1 KEGG: cac:CAC1082 hypothetical protein YP_001362081.1 PFAM: histone family protein DNA-binding protein; KEGG: mkm:Mkms_1969 histone family protein DNA-binding protein YP_001362079.1 KEGG: afm:Afu2g17000 PT repeat family YP_001362077.1 PFAM: plasmid encoded RepA protein; KEGG: ppd:Ppro_3841 plasmid encoded RepA protein YP_001362075.1 PFAM: peptidase domain protein; KEGG: nfa:nfa18030 hypothetical protein YP_001362074.1 KEGG: fal:FRAAL0073 hypothetical protein; signal peptide YP_001362073.1 PFAM: transcription factor WhiB; KEGG: rha:RHA1_ro11064 possible transcriptional regulator, WhiB family YP_001362070.1 PFAM: regulatory protein LuxR; SMART: AAA ATPase; KEGG: msm:MSMEG_6828 transcriptional regulator YP_001362069.1 PFAM: regulatory protein TetR; KEGG: mtc:MT0468 hypothetical protein YP_001362068.1 PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator YP_001362066.1 PFAM: protein of unknown function DUF214; KEGG: cdi:DIP0449 ABC transport system integral membrane protein YP_001362064.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO4666 ABC-transporter ATP-binding protein YP_001362063.1 PFAM: ThiJ/PfpI domain protein; KEGG: gsu:GSU1159 intracellular protease, PfpI family YP_001362062.1 PFAM: aldo/keto reductase; KEGG: gvi:gll0838 probable oxidoreductase YP_001362061.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: nfa:nfa32620 lipase YP_001362059.1 KEGG: msm:MSMEG_0890 HD domain protein YP_001362058.1 KEGG: mmu:675202 similar to myosin heavy chain Myr 8 YP_001362057.1 PFAM: regulatory protein MerR; KEGG: fal:FRAAL2327 MerR-family transcriptional regulator YP_001362056.1 PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator YP_001362055.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_1494 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001362054.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pfo:Pfl_2073 NADP oxidoreductase, coenzyme F420-dependent YP_001362053.1 PFAM: low temperature requirement A; KEGG: sma:SAV3683 hypothetical protein YP_001362052.1 PFAM: protein of unknown function DUF1486; KEGG: rha:RHA1_ro05376 hypothetical protein YP_001362051.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV541 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase YP_001362050.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO3648 transmembrane efflux protein YP_001362049.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: aau:AAur_4022 NADP oxidoreductase coenzyme F420-dependent family protein YP_001362048.1 PFAM: aldo/keto reductase; KEGG: aau:AAur_1437 oxidoreductase, aldo/keto reductase family YP_001362045.1 KEGG: sco:SCO7296 hypothetical protein YP_001362044.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO7297 two-component sensor histidine kinase YP_001362043.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver; FAD dependent oxidoreductase; KEGG: fal:FRAAL1961 thioredoxin reductase YP_001362040.1 PFAM: cupin; KEGG: nph:NP2080A hypothetical protein YP_001362039.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02637 hypothetical protein YP_001362038.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL1857 MFS sugar transporter protein YP_001362036.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; KEGG: msm:MSMEG_6828 transcriptional regulator YP_001362034.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rle:RL1254 hypothetical protein YP_001362033.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sco:SCO7766 hypothetical protein YP_001362032.1 KEGG: mva:Mvan_5809 conserved hypothetical protein YP_001362031.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; Sigma-70 region 4 type 2; KEGG: msm:MSMEG_6828 transcriptional regulator YP_001362020.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdi:DIP0880 RNA polymerase sigma factor YP_001362017.1 PFAM: integrase catalytic region; KEGG: msm:MSMEG_1249 ISMsm7, transposase orfB YP_001362016.1 PFAM: transposase IS3/IS911 family protein; KEGG: msm:MSMEG_1250 ISMsm7, transposase orfA YP_001362015.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2992 acetyltransferase YP_001362009.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fra:Francci3_2472 sigma-24 YP_001362008.1 KEGG: lmf:LMOf2365_0283 internalin E YP_001362005.1 KEGG: sco:SCO2460 hypothetical protein YP_001362004.1 KEGG: dsy:DSY0426 hypothetical protein YP_001362003.1 KEGG: sma:SAV6912 hypothetical protein YP_001362002.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein YP_001362001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2412 acetyltransferase, GNAT family YP_001361992.1 KEGG: cme:CMX008C similar to hedgehog protein Pfam: PLRV_ORF5 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH YP_001361991.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ace:Acel_1494 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001361990.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_3958 glyoxalase/bleomycin resistance protein/dioxygenase YP_001361988.1 KEGG: art:Arth_4271 hypothetical protein YP_001361987.1 SMART: AAA ATPase; KEGG: pna:Pnap_4795 hypothetical protein YP_001361986.1 KEGG: rha:RHA1_ro10005 hypothetical protein YP_001361985.1 PFAM: RDD domain containing protein; KEGG: bte:BTH_I1041 RDD family YP_001361982.1 KEGG: pac:PPA0277 hypothetical protein YP_001361981.1 PFAM: NHL repeat containing protein; cell wall binding repeat 2-containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2-containing protein YP_001361980.1 PFAM: LrgB family protein; KEGG: gme:Gmet_1204 LrgB-like protein YP_001361979.1 PFAM: LrgA family protein; KEGG: azo:azo1155 conserved hypothetical membrane protein YP_001361978.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_1897 3-oxoadipate enol-lactonase YP_001361977.1 KEGG: sus:Acid_7648 hypothetical protein YP_001361976.1 PFAM: ABC transporter inner membrane protein; KEGG: aau:AAur_pTC20133 sugar ABC transporter, permease protein YP_001361975.1 PFAM: ABC transporter inner membrane protein; KEGG: art:Arth_3328 ABC transporter inner membrane protein YP_001361973.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0780 extracellular solute-binding protein, family 1 YP_001361972.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001361971.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: rde:RD1_3860 racemase YP_001361970.1 PFAM: regulatory protein IclR; IclR family transcriptional regulator; KEGG: tfu:Tfu_0849 regulatory proteins, IclR YP_001361969.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: osa:4344469 Os08g0109200 YP_001468097.1 KEGG: pac:PPA0277 hypothetical protein YP_001468102.1 KEGG: fal:FRAAL5740 hypothetical protein YP_001468104.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: art:Arth_4221 serine/threonine protein kinase YP_001468105.1 KEGG: art:Arth_4222 hypothetical protein YP_001468106.1 KEGG: art:Arth_4223 transcriptional regulator, BadM/Rrf2 family YP_001468109.1 KEGG: ptr:468101 SET domain containing 1A YP_001468112.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bja:bll4989 putative esterase YP_001468113.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: nca:Noca_2635 response regulator receiver YP_001468114.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: nca:Noca_2634 ATP-binding region, ATPase domain protein domain protein YP_001468115.1 KEGG: cne:CNI03200 hypothetical protein YP_001468116.1 PFAM: protein of unknown function DUF204; KEGG: cth:Cthe_1420 protein of unknown function DUF204 YP_001468117.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: sma:SAV6188 hypothetical protein YP_001468118.1 KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20 YP_001468120.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mag:amb2928 bacteriophytochrome YP_001468121.1 PFAM: ferric-uptake regulator; KEGG: nca:Noca_1934 ferric-uptake regulator YP_001468122.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein YP_001468123.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: sma:SAV2638 putative signal peptidase YP_001468124.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO4152 putative secreted 5'-nucleotidase YP_001468125.1 PFAM: regulatory protein ArsR; KEGG: art:Arth_4237 transcriptional regulator, TrmB YP_001468126.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: tfu:Tfu_1571 hypothetical protein YP_001468127.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: art:Arth_4444 cation diffusion facilitator family transporter YP_001468128.1 PFAM: copper resistance protein CopC; KEGG: art:Arth_4442 copper resistance protein CopC YP_001468129.1 PFAM: flagellar basal body-associated protein FliL; KEGG: nca:Noca_0747 flagellar basal body-associated protein FliL YP_001468130.1 PFAM: Alkaline phosphatase; metalloenzyme domain protein; KEGG: gka:GK2701 alkaline phosphatase YP_001468131.1 KEGG: hsa:80712 extraembryonic, spermatogenesis, homeobox 1 homolog (mouse) YP_001468133.1 KEGG: rha:RHA1_ro08004 hypothetical protein YP_001468134.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: art:Arth_4237 transcriptional regulator, TrmB YP_001468135.1 PFAM: cation efflux protein; KEGG: sco:SCO3521 integral membrane protein YP_001468137.1 PFAM: NLP/P60 protein; KEGG: aau:AAur_pTC10149 putative protein of unknown function, NlpC/P60 domain YP_001468138.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein YP_001468139.1 PFAM: flagellar basal body-associated protein FliL; KEGG: nca:Noca_0747 flagellar basal body-associated protein FliL YP_001468141.1 PFAM: transglutaminase domain protein; KEGG: sma:SAV6110 hypothetical protein YP_001468143.1 PFAM: ResB family protein; KEGG: art:Arth_3290 ResB family protein YP_001468144.1 TIGRFAM: apolipoprotein N-acyltransferase; KEGG: nfa:nfa31180 putative polyprenol phosphate mannosyl transferase 2 YP_001468145.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein YP_001468146.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein YP_001468149.1 KEGG: lxx:Lxx23680 putative copper resistance protein D YP_001468150.1 PFAM: copper resistance protein CopC; KEGG: fra:Francci3_2794 copper resistance protein CopC YP_001468151.1 KEGG: reu:Reut_A1445 cell divisionFtsK/SpoIIIE YP_001468152.1 KEGG: aau:AAur_pTC20046 hypothetical protein YP_001468153.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: art:Arth_4444 cation diffusion facilitator family transporter YP_001468154.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: nca:Noca_2215 regulatory protein, ArsR YP_001468155.1 PFAM: DSBA oxidoreductase; KEGG: aau:AAur_pTC10192 putative thioredoxin domain protein (DsbA) YP_001468156.1 PFAM: Vitamin K epoxide reductase; KEGG: rha:RHA1_ro07031 hypothetical protein YP_001468157.1 PFAM: cytochrome c assembly protein; KEGG: aau:AAur_pTC10173 putative cytochrome biogenesis protein YP_001468158.1 PFAM: protein of unknown function DUF305; KEGG: fal:FRAAL6297 conserved hypothetical protein; putative signal peptide YP_001468159.1 KEGG: art:Arth_4456 hypothetical protein YP_001468160.1 PFAM: regulatory protein ArsR; KEGG: mva:Mvan_3640 regulatory protein, ArsR YP_001468161.1 PFAM: peptidase A8 signal peptidase II; KEGG: nfa:pnf1340 putative signal peptidase YP_001468163.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd-carboxypeptidase YP_001468167.1 PFAM: acyltransferase 3; KEGG: msm:MSMEG_0206 acyltransferase 3 YP_001468169.1 PFAM: protein of unknown function DUF305; KEGG: sma:SAV4777 hypothetical protein YP_001468170.1 PFAM: protein of unknown function DUF156; KEGG: nfa:nfa8420 hypothetical protein YP_001468171.1 PFAM: Heavy metal transport/detoxification protein; KEGG: art:Arth_4098 heavy metal transport/detoxification protein YP_001468172.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mva:Mvan_3670 heavy metal translocating P-type ATPase YP_001468173.1 KEGG: sma:SAV6090 hypothetical protein YP_001468174.1 KEGG: aau:AAur_pTC10142 BNR/Asp-box repeat domain protein YP_001468175.1 KEGG: fal:FRAAL6093 hypothetical protein; putative PGRS-family protein YP_001468179.1 KEGG: sma:SAV2403 hypothetical protein YP_001468181.1 KEGG: art:Arth_2318 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001468187.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ava:Ava_1825 hypothetical protein YP_001468190.1 KEGG: mpa:MAP0185c hypothetical protein YP_001468193.1 KEGG: art:Arth_4515 hypothetical protein YP_001468195.1 KEGG: pac:PPA1294 hypothetical protein YP_001468199.1 KEGG: tfu:Tfu_0073 similar to ATPase involved in chromosome partitioning YP_001468200.1 KEGG: mva:Mvan_5673 conserved hypothetical protein YP_001468205.1 PFAM: glycoside hydrolase family 6; KEGG: nca:Noca_3501 cellulase YP_001468206.1 KEGG: Dspp; dentin sialophosphoprotein YP_001468207.1 KEGG: rha:RHA1_ro10035 hypothetical protein YP_001468208.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rha:RHA1_ro10029 probable DNA translocase YP_001468209.1 KEGG: cfa:476752 similar to transcription elongation factor B polypeptide 3 binding protein 1 YP_001468211.1 KEGG: fal:FRAAL1676 modular polyketide synthase YP_001468212.1 PFAM: NLP/P60 protein; KEGG: sma:SAV178 NLP/P60-family secreted protein YP_001468213.1 KEGG: rha:RHA1_ro10027 hypothetical protein YP_001468214.1 KEGG: rha:RHA1_ro10026 hypothetical protein YP_001468215.1 KEGG: ptr:746424 hypothetical protein LOC746424 YP_001468217.1 KEGG: rha:RHA1_ro10023 hypothetical protein YP_001468219.1 KEGG: rha:RHA1_ro10021 hypothetical protein YP_001468220.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: art:Arth_4519 cobyrinic acid a,c-diamide synthase YP_001468221.1 KEGG: dra:DR0458 hypothetical protein YP_001468224.1 KEGG: fra:Francci3_1739 putative ATP/GTP-binding protein YP_001468225.1 PFAM: SAF domain protein; KEGG: nca:Noca_1539 SAF domain YP_001468226.1 KEGG: sco:SCO4525 hypothetical protein YP_001468227.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: sco:SCO4526 protein kinase YP_001468228.1 PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein YP_001468229.1 PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein YP_001468231.1 PFAM: TadE family protein; KEGG: nca:Noca_2226 TadE family protein YP_001468232.1 PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein YP_001468233.1 PFAM: TadE family protein; KEGG: sma:SAV191 hypothetical protein YP_001468234.1 KEGG: sco:SCP1.176 putative large membrane protein YP_001468235.1 KEGG: sco:SCO4549 putative type IV peptidase YP_001468237.1 KEGG: psp:PSPPH_2152 hypothetical protein YP_001468238.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001468239.1 PFAM: SCP-like extracellular YP_001468241.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_4137 ABC transporter related YP_001468242.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: hch:HCH_00401 putative exonuclease YP_001468245.1 KEGG: mul:MUL_2605 transcriptional regulatory protein WhiB-like WhiB2 YP_001468249.1 KEGG: rha:RHA1_ro11299 hypothetical protein YP_001468256.1 KEGG: nca:Noca_1890 hypothetical protein YP_001468257.1 KEGG: xom:XOO_3934 hypothetical protein YP_001468259.1 PFAM: protein of unknown function DUF664; KEGG: sma:SAV3241 hypothetical protein YP_001468267.1 KEGG: mkm:Mkms_5863 conserved hypothetical protein YP_001468268.1 KEGG: bld:BLi00833 YfjM YP_001468277.1 KEGG: nca:Noca_1441 hypothetical protein YP_001468278.1 KEGG: mkm:Mkms_5516 hypothetical protein