-- dump date 20140619_120353 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 471856000001 SEQ_END SEQ_END NC_013174.1 2749646 2749646 DR NC_013174.1; contig end 2749646..2749646 Jonesia denitrificans DSM 20603 YP_003159983.1 CDS Jden_0001 NC_013174.1 159 1589 D KEGG: bha:BH0001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 159..1589 Jonesia denitrificans DSM 20603 8381839 YP_003159984.1 CDS Jden_0002 NC_013174.1 2173 3303 D KEGG: bcz:BCZK0002 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 2173..3303 Jonesia denitrificans DSM 20603 8379202 YP_003159985.1 CDS Jden_0003 NC_013174.1 3384 4631 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bcu:BCAH820_0004 DNA replication and repair protein RecF; DNA replication and repair protein RecF 3384..4631 Jonesia denitrificans DSM 20603 8379203 YP_003159986.1 CDS Jden_0004 NC_013174.1 4618 5133 D PFAM: protein of unknown function DUF721; KEGG: dal:Dalk_0721 protein of unknown function DUF721; hypothetical protein 4618..5133 Jonesia denitrificans DSM 20603 8379204 YP_003159987.1 CDS Jden_0005 NC_013174.1 5370 7430 D KEGG: bha:BH0006 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 5370..7430 Jonesia denitrificans DSM 20603 8379205 YP_003159988.1 CDS Jden_0006 NC_013174.1 7495 10110 D KEGG: gsu:GSU0004 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 7495..10110 Jonesia denitrificans DSM 20603 8379206 YP_003159989.1 CDS Jden_0007 NC_013174.1 10316 10498 R hypothetical protein complement(10316..10498) Jonesia denitrificans DSM 20603 8379207 YP_003159990.1 CDS Jden_0008 NC_013174.1 10545 10952 D hypothetical protein 10545..10952 Jonesia denitrificans DSM 20603 8379208 YP_003159991.1 CDS Jden_0009 NC_013174.1 11158 11277 D hypothetical protein 11158..11277 Jonesia denitrificans DSM 20603 8381712 YP_003159992.1 CDS Jden_0010 NC_013174.1 11427 11801 R hypothetical protein complement(11427..11801) Jonesia denitrificans DSM 20603 8381713 YP_003159993.1 CDS Jden_0011 NC_013174.1 11938 12816 D SMART: AAA ATPase; KEGG: scl:sce9135 protein kinase; ATPase AAA 11938..12816 Jonesia denitrificans DSM 20603 8379211 YP_003159994.1 CDS Jden_0012 NC_013174.1 12869 14122 R PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein; glycoside hydrolase family protein complement(12869..14122) Jonesia denitrificans DSM 20603 8379212 YP_003159995.1 CDS Jden_0013 NC_013174.1 14192 15859 R KEGG: bha:BH1004 hypothetical protein; hypothetical protein complement(14192..15859) Jonesia denitrificans DSM 20603 8379213 YP_003159996.1 CDS Jden_0014 NC_013174.1 15856 16758 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein; ABC transporter complement(15856..16758) Jonesia denitrificans DSM 20603 8379214 YP_003159997.1 CDS Jden_0015 NC_013174.1 16989 18386 D PFAM: protein of unknown function DUF195; KEGG: bxe:Bxe_A1056 hypothetical protein; hypothetical protein 16989..18386 Jonesia denitrificans DSM 20603 8379215 YP_003159998.1 CDS Jden_0016 NC_013174.1 18470 19663 R KEGG: hypothetical protein LOC100013274; hypothetical protein complement(18470..19663) Jonesia denitrificans DSM 20603 8379216 YP_003159999.1 CDS Jden_0017 NC_013174.1 19689 20516 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpi:Rpic_1798 cytochrome c biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane region complement(19689..20516) Jonesia denitrificans DSM 20603 8379217 YP_003160000.1 CDS Jden_0018 NC_013174.1 20526 21425 R PFAM: DSBA oxidoreductase; KEGG: afw:Anae109_0475 DsbA oxidoreductase; DSBA oxidoreductase complement(20526..21425) Jonesia denitrificans DSM 20603 8379218 YP_003160001.1 CDS Jden_0019 NC_013174.1 21706 22110 D hypothetical protein 21706..22110 Jonesia denitrificans DSM 20603 8379219 YP_003160002.1 CDS Jden_0020 NC_013174.1 22211 22894 D KEGG: ypi:YpsIP31758_0672 hypothetical protein; hypothetical protein 22211..22894 Jonesia denitrificans DSM 20603 8379220 YP_003160003.1 CDS Jden_0021 NC_013174.1 22966 23403 D TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: sdy:SDY_2867 ribonucleotide reductase stimulatory protein; NrdI protein 22966..23403 Jonesia denitrificans DSM 20603 8379221 YP_003160004.1 CDS Jden_0022 NC_013174.1 23421 25163 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pzu:PHZ_c1942 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(23421..25163) Jonesia denitrificans DSM 20603 8379222 YP_003160005.1 CDS Jden_0023 NC_013174.1 25216 26469 D KEGG: nmu:Nmul_A0853 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 25216..26469 Jonesia denitrificans DSM 20603 8379223 YP_003160006.1 CDS Jden_0024 NC_013174.1 26505 28241 R PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: psb:Psyr_2314 pyruvate dehydrogenase; thiamine pyrophosphate protein TPP binding domain-containing protein complement(26505..28241) Jonesia denitrificans DSM 20603 8379224 YP_003160007.1 CDS Jden_0025 NC_013174.1 28750 29658 D hypothetical protein 28750..29658 Jonesia denitrificans DSM 20603 8381714 YP_003160008.1 CDS Jden_0026 NC_013174.1 29869 30453 D PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 29869..30453 Jonesia denitrificans DSM 20603 8379226 YP_003160009.1 CDS Jden_0027 NC_013174.1 30493 31551 R PFAM: MMPL domain protein; KEGG: bcz:BCZK2163 MmpL family integral membrane protein; MMPL domain-containing protein complement(30493..31551) Jonesia denitrificans DSM 20603 8379227 YP_003160010.1 CDS Jden_0028 NC_013174.1 31937 32971 D PFAM: glycosyl transferase group 1; KEGG: vvy:VVA0389 glycosyltransferase; group 1 glycosyl transferase 31937..32971 Jonesia denitrificans DSM 20603 8379228 YP_003160011.1 CDS Jden_0029 NC_013174.1 32968 34044 D PFAM: glycosyl transferase group 1; KEGG: eci:UTI89_C2304 putative glycosyltransferase WbdM; group 1 glycosyl transferase 32968..34044 Jonesia denitrificans DSM 20603 8379229 YP_003160012.1 CDS Jden_0030 NC_013174.1 34041 35084 D KEGG: bur:Bcep18194_B2868 hypothetical protein; hypothetical protein 34041..35084 Jonesia denitrificans DSM 20603 8379230 YP_003160013.1 CDS Jden_0031 NC_013174.1 35081 36991 D PFAM: glycosyl transferase family 2; KEGG: hch:HCH_03420 hypothetical protein; family 2 glycosyl transferase 35081..36991 Jonesia denitrificans DSM 20603 8379231 YP_003160014.1 CDS Jden_0032 NC_013174.1 36984 38447 D PFAM: polysaccharide biosynthesis protein; KEGG: xfa:XF2362 GumJ protein; polysaccharide biosynthesis protein 36984..38447 Jonesia denitrificans DSM 20603 8379232 YP_003160015.1 CDS Jden_0033 NC_013174.1 38440 39696 D KEGG: smd:Smed_4574 hypothetical protein; hypothetical protein 38440..39696 Jonesia denitrificans DSM 20603 8379233 YP_003160016.1 CDS Jden_0034 NC_013174.1 40517 41839 R KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(40517..41839) Jonesia denitrificans DSM 20603 8379234 YP_003160017.1 CDS Jden_0035 NC_013174.1 41893 43356 R KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(41893..43356) Jonesia denitrificans DSM 20603 8379235 YP_003160018.1 CDS Jden_0036 NC_013174.1 43344 44336 R KEGG: rme:Rmet_3650 putative hemagglutinin-related transmembrane protein; hypothetical protein complement(43344..44336) Jonesia denitrificans DSM 20603 8379236 YP_003160019.1 CDS Jden_0037 NC_013174.1 44338 44967 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: tmz:Tmz1t_1137 protein tyrosine phosphatase; protein tyrosine phosphatase complement(44338..44967) Jonesia denitrificans DSM 20603 8379237 YP_003160020.1 CDS Jden_0038 NC_013174.1 44967 46391 R KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein complement(44967..46391) Jonesia denitrificans DSM 20603 8379238 YP_003160021.1 CDS Jden_0039 NC_013174.1 47216 47626 D hypothetical protein 47216..47626 Jonesia denitrificans DSM 20603 8379239 YP_003160022.1 CDS Jden_0040 NC_013174.1 48160 48543 D hypothetical protein 48160..48543 Jonesia denitrificans DSM 20603 8379240 YP_003160023.1 CDS Jden_0041 NC_013174.1 48894 49031 D hypothetical protein 48894..49031 Jonesia denitrificans DSM 20603 8379241 YP_003160024.1 CDS Jden_0042 NC_013174.1 49134 51164 D KEGG: rso:RS05070 putative hemagglutinin/hemolysin- related protein; hypothetical protein 49134..51164 Jonesia denitrificans DSM 20603 8379242 YP_003160025.1 CDS Jden_0043 NC_013174.1 51223 51864 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0281 ABC transporter ATP-binding protein; ABC transporter 51223..51864 Jonesia denitrificans DSM 20603 8379243 YP_003160026.1 CDS Jden_0044 NC_013174.1 52048 53307 R PFAM: filamentation induced by cAMP protein Fic; KEGG: afw:Anae109_0607 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(52048..53307) Jonesia denitrificans DSM 20603 8379244 YP_003160027.1 CDS Jden_0046 NC_013174.1 54807 55928 R KEGG: rec:RHECIAT_CH0003374 putative DNA alkylation repair protein; putative DNA alkylation repair protein complement(54807..55928) Jonesia denitrificans DSM 20603 8381715 YP_003160028.1 CDS Jden_0047 NC_013174.1 56064 57224 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_7329 radical SAM domain-containing protein; radical SAM protein complement(56064..57224) Jonesia denitrificans DSM 20603 8379246 YP_003160029.1 CDS Jden_0048 NC_013174.1 57270 57416 D hypothetical protein 57270..57416 Jonesia denitrificans DSM 20603 8379247 YP_003160030.1 CDS Jden_0050 NC_013174.1 58074 58712 D PFAM: protein of unknown function DUF161; KEGG: atc:AGR_C_867 hypothetical protein; hypothetical protein 58074..58712 Jonesia denitrificans DSM 20603 8381716 YP_003160031.1 CDS Jden_0051 NC_013174.1 58709 60238 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1369 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(58709..60238) Jonesia denitrificans DSM 20603 8379249 YP_003160032.1 CDS Jden_0052 NC_013174.1 60497 61063 D PFAM: regulatory protein TetR; KEGG: rme:Rmet_4404 transcriptional regulator, TetR family; TetR family transcriptional regulator 60497..61063 Jonesia denitrificans DSM 20603 8379250 YP_003160033.1 CDS Jden_0053 NC_013174.1 61067 61987 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: acr:Acry_2159 LysR family transcriptional regulator; LysR family transcriptional regulator complement(61067..61987) Jonesia denitrificans DSM 20603 8379251 YP_003160034.1 CDS Jden_0054 NC_013174.1 62058 63200 D PFAM: conserved hypothetical protein; KEGG: rru:Rru_A0605 hypothetical protein; hypothetical protein 62058..63200 Jonesia denitrificans DSM 20603 8379252 YP_003160035.1 CDS Jden_0056 NC_013174.1 65970 66329 R hypothetical protein complement(65970..66329) Jonesia denitrificans DSM 20603 8381717 YP_003160036.1 CDS Jden_0057 NC_013174.1 66331 66912 R KEGG: bcb:BCB4264_A5165 hypothetical protein; hypothetical protein complement(66331..66912) Jonesia denitrificans DSM 20603 8379254 YP_003160037.1 CDS Jden_0058 NC_013174.1 67144 67302 D hypothetical protein 67144..67302 Jonesia denitrificans DSM 20603 8379255 YP_003160038.1 CDS Jden_0059 NC_013174.1 67320 67496 R hypothetical protein complement(67320..67496) Jonesia denitrificans DSM 20603 8379256 YP_003160039.1 CDS Jden_0060 NC_013174.1 67547 68113 R KEGG: PHD finger domain protein; K11380 NuA3 HAT complex component NTO1; hypothetical protein complement(67547..68113) Jonesia denitrificans DSM 20603 8379257 YP_003160040.1 CDS Jden_0061 NC_013174.1 68251 68463 D hypothetical protein 68251..68463 Jonesia denitrificans DSM 20603 8379258 YP_003160041.1 CDS Jden_0062 NC_013174.1 68694 71258 D PFAM: alpha-L-arabinofuranosidase B; KEGG: eca:ECA0931 putative avirulence protein; alpha-L-arabinofuranosidase 68694..71258 Jonesia denitrificans DSM 20603 8379259 YP_003160042.1 CDS Jden_0063 NC_013174.1 71792 72553 D PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: bmj:BMULJ_04844 DeoR family fructose operon transcriptional repressor; Cro/CI family transcriptional regulator 71792..72553 Jonesia denitrificans DSM 20603 8379260 YP_003160043.1 CDS Jden_0064 NC_013174.1 72550 73497 D KEGG: mpo:Mpop_1188 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 72550..73497 Jonesia denitrificans DSM 20603 8379261 YP_003160044.1 CDS Jden_0065 NC_013174.1 73499 73951 D TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ppr:PBPRA2715 putative PTS system, fructose- specific IIABC component; putative PTS IIA-like nitrogen-regulatory protein PtsN 73499..73951 Jonesia denitrificans DSM 20603 8379262 YP_003160045.1 CDS Jden_0066 NC_013174.1 73948 75459 D TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: bte:BTH_II0908 protein-N p-phosphohistidine- sugar phosphotransferase; PTS system fructose subfamily transporter subunit IIC 73948..75459 Jonesia denitrificans DSM 20603 8379263 YP_003160046.1 CDS Jden_0067 NC_013174.1 75491 75763 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cak:Caul_4626 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 75491..75763 Jonesia denitrificans DSM 20603 8379264 YP_003160047.1 CDS Jden_0068 NC_013174.1 75760 77469 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: phosphoenolpyruvate--protein phosphotransferase; K02768 PTS system, fructose- specific IIA component; phosphoenolpyruvate-protein phosphotransferase 75760..77469 Jonesia denitrificans DSM 20603 8379265 YP_003160048.1 CDS Jden_0069 NC_013174.1 77553 77855 R PFAM: ribosomal protein S14; KEGG: mxa:MXAN_6528 ribosomal protein S14; 30S ribosomal protein S14 complement(77553..77855) Jonesia denitrificans DSM 20603 8379266 YP_003160049.1 CDS Jden_0070 NC_013174.1 77879 78115 D hypothetical protein 77879..78115 Jonesia denitrificans DSM 20603 8379267 YP_003160050.1 CDS Jden_0071 NC_013174.1 78160 78282 D TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: gox:GOX0732 50S ribosomal protein L36; 50S ribosomal protein L36 78160..78282 Jonesia denitrificans DSM 20603 8379268 YP_003160051.1 CDS Jden_0072 NC_013174.1 78421 79776 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mxa:MXAN_0278 mercuric reductase, truncated; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 78421..79776 Jonesia denitrificans DSM 20603 8379269 YP_003160052.1 CDS Jden_0073 NC_013174.1 79851 80885 R KEGG: rce:RC1_3391 transferase, putative; transferase complement(79851..80885) Jonesia denitrificans DSM 20603 8379270 YP_003160053.1 CDS Jden_0074 NC_013174.1 81065 82297 D PFAM: major facilitator superfamily MFS_1; KEGG: sil:SPO1430 antibiotic efflux protein; major facilitator superfamily protein 81065..82297 Jonesia denitrificans DSM 20603 8379271 YP_003160054.1 CDS Jden_0075 NC_013174.1 82555 83148 D SMART: regulatory protein ArsR; KEGG: rle:RL3148 putative transcriptional regulator; regulatory protein ArsR 82555..83148 Jonesia denitrificans DSM 20603 8379272 YP_003160055.1 CDS Jden_0076 NC_013174.1 84691 86025 D PFAM: Radical SAM domain protein; KEGG: cvi:CV_0072 hypothetical protein; radical SAM protein 84691..86025 Jonesia denitrificans DSM 20603 8379273 YP_003160056.1 CDS Jden_0077 NC_013174.1 86109 86537 D PFAM: YCII-related; KEGG: pau:PA14_46770 hypothetical protein; YCII-like protein 86109..86537 Jonesia denitrificans DSM 20603 8379274 YP_003160057.1 CDS Jden_0078 NC_013174.1 86563 88083 R PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: yen:YE0973 putative membrane transport protein; sulfate transporter complement(86563..88083) Jonesia denitrificans DSM 20603 8379275 YP_003160058.1 CDS Jden_0079 NC_013174.1 88169 89740 R TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: mxa:MXAN_5992 peptide chain release factor 3; small GTP-binding protein complement(88169..89740) Jonesia denitrificans DSM 20603 8379276 YP_003160059.1 CDS Jden_0080 NC_013174.1 89737 90150 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: eli:ELI_04465 transcriptional regulator, MerR family protein; transcriptional regulator, MerR family complement(89737..90150) Jonesia denitrificans DSM 20603 8379277 YP_003160060.1 CDS Jden_0081 NC_013174.1 90685 91191 D hypothetical protein 90685..91191 Jonesia denitrificans DSM 20603 8379278 YP_003160061.1 CDS Jden_0082 NC_013174.1 91215 92390 D KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; hypothetical protein 91215..92390 Jonesia denitrificans DSM 20603 8379279 YP_003160062.1 CDS Jden_0083 NC_013174.1 92387 93025 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppw:PputW619_3534 ABC transporter related; ABC transporter 92387..93025 Jonesia denitrificans DSM 20603 8379280 YP_003160063.1 CDS Jden_0084 NC_013174.1 93022 94125 D PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0721 ABC efflux pump, inner membrane subunit; hypothetical protein 93022..94125 Jonesia denitrificans DSM 20603 8379281 YP_003160064.1 CDS Jden_0085 NC_013174.1 94383 94868 D hypothetical protein 94383..94868 Jonesia denitrificans DSM 20603 8379282 YP_003160065.1 CDS Jden_0086 NC_013174.1 94875 96443 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: bcr:BCAH187_A3177 MATE efflux family protein; MATE efflux family protein complement(94875..96443) Jonesia denitrificans DSM 20603 8379283 YP_003160066.1 CDS Jden_0087 NC_013174.1 96784 97476 D TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: nar:Saro_3256 uracil-DNA glycosylase; uracil-DNA glycosylase 96784..97476 Jonesia denitrificans DSM 20603 8379284 YP_003160067.1 CDS Jden_0088 NC_013174.1 97823 98506 D PFAM: YKOF domain protein; KEGG: mlo:mll1759 hypothetical protein; hypothetical protein 97823..98506 Jonesia denitrificans DSM 20603 8379285 YP_003160068.1 CDS Jden_0089 NC_013174.1 98587 99201 D KEGG: bsu:BSU13230 hypothetical protein; hypothetical protein 98587..99201 Jonesia denitrificans DSM 20603 8379286 YP_003160069.1 CDS Jden_0090 NC_013174.1 99198 100922 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU13220 hypothetical protein; ABC transporter 99198..100922 Jonesia denitrificans DSM 20603 8379287 YP_003160070.1 CDS Jden_0091 NC_013174.1 100919 101695 D PFAM: cobalt transport protein; KEGG: bsu:BSU13210 hypothetical protein; cobalt transport protein 100919..101695 Jonesia denitrificans DSM 20603 8379288 YP_003160071.1 CDS Jden_0092 NC_013174.1 101703 102947 R PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_1864 major facilitator transporter; major facilitator superfamily protein complement(101703..102947) Jonesia denitrificans DSM 20603 8379289 YP_003160072.1 CDS Jden_0093 NC_013174.1 102958 103683 R PFAM: ExsB family protein; KEGG: ilo:IL0914 PP-loop superfamily ATPase; ExsB family protein complement(102958..103683) Jonesia denitrificans DSM 20603 8379290 YP_003160073.1 CDS Jden_0094 NC_013174.1 103990 104283 R PFAM: SirA family protein; KEGG: ilo:IL0009 redox protein, regulator of disulfide bond formation; SirA family protein complement(103990..104283) Jonesia denitrificans DSM 20603 8379291 YP_003160074.1 CDS Jden_0095 NC_013174.1 104411 104788 R hypothetical protein complement(104411..104788) Jonesia denitrificans DSM 20603 8379292 YP_003160075.1 CDS Jden_0096 NC_013174.1 105198 107099 D hypothetical protein 105198..107099 Jonesia denitrificans DSM 20603 8379293 YP_003160076.1 CDS Jden_0097 NC_013174.1 107258 109636 D PFAM: ABC transporter related; KEGG: scl:sce6315 excinuclease ABC subunit A; ABC transporter 107258..109636 Jonesia denitrificans DSM 20603 8379294 YP_003160077.1 CDS Jden_0098 NC_013174.1 109663 110499 D PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pna:Pnap_0622 NmrA family protein; NmrA family protein 109663..110499 Jonesia denitrificans DSM 20603 8379295 YP_003160078.1 CDS Jden_0099 NC_013174.1 110522 110770 R hypothetical protein complement(110522..110770) Jonesia denitrificans DSM 20603 8379296 YP_003160079.1 CDS Jden_0100 NC_013174.1 110857 111903 R KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; transcriptional regulator, LacI family complement(110857..111903) Jonesia denitrificans DSM 20603 8379297 YP_003160080.1 CDS Jden_0101 NC_013174.1 112170 113486 D PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter; K10188 lactose/L- arabinose transport system substrate-binding protein; extracellular solute-binding protein 112170..113486 Jonesia denitrificans DSM 20603 8379298 YP_003160081.1 CDS Jden_0102 NC_013174.1 113644 114576 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_2714 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 113644..114576 Jonesia denitrificans DSM 20603 8379299 YP_003160082.1 CDS Jden_0103 NC_013174.1 114576 115478 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smt:Smal_2681 monosaccharide-transporting ATPase; binding-protein-dependent transport system inner membrane protein 114576..115478 Jonesia denitrificans DSM 20603 8379300 YP_003160083.1 CDS Jden_0104 NC_013174.1 115545 117299 D PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: similar to Ect3 CG3132-PA; beta-galactosidase 115545..117299 Jonesia denitrificans DSM 20603 8379301 YP_003160084.1 CDS Jden_0105 NC_013174.1 117296 118309 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pzu:PHZ_c1983 alcohol dehydrogenase, zinc- containing; Alcohol dehydrogenase zinc-binding domain-containing protein complement(117296..118309) Jonesia denitrificans DSM 20603 8379302 YP_003160085.1 CDS Jden_0106 NC_013174.1 118434 119012 D PFAM: regulatory protein TetR; KEGG: hch:HCH_06413 transcriptional regulator; TetR family transcriptional regulator 118434..119012 Jonesia denitrificans DSM 20603 8379303 YP_003160086.1 CDS Jden_0108 NC_013174.1 119555 120526 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: cvi:CV_2446 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-ketoacyl-ACP synthase I 119555..120526 Jonesia denitrificans DSM 20603 8381718 YP_003160087.1 CDS Jden_0109 NC_013174.1 120520 121251 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_2961 ABC transporter related; ABC transporter 120520..121251 Jonesia denitrificans DSM 20603 8379305 YP_003160088.1 CDS Jden_0110 NC_013174.1 121248 123527 D PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 hypothetical protein; hypothetical protein 121248..123527 Jonesia denitrificans DSM 20603 8379306 YP_003160089.1 CDS Jden_0111 NC_013174.1 123511 124134 R PFAM: regulatory protein TetR; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator; TetR family transcriptional regulator complement(123511..124134) Jonesia denitrificans DSM 20603 8379307 YP_003160090.1 CDS Jden_0112 NC_013174.1 124205 125095 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bsu:BSU40670 hypothetical protein; LysR family transcriptional regulator complement(124205..125095) Jonesia denitrificans DSM 20603 8379308 YP_003160091.1 CDS Jden_0113 NC_013174.1 125200 126498 D PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5298 major facilitator transporter; major facilitator superfamily protein 125200..126498 Jonesia denitrificans DSM 20603 8379309 YP_003160092.1 CDS Jden_0114 NC_013174.1 126686 127732 R PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bsu:BSU27010 NADP-dependent alcohol dehydrogenase; Alcohol dehydrogenase GroES domain-containing protein complement(126686..127732) Jonesia denitrificans DSM 20603 8379310 YP_003160093.1 CDS Jden_0115 NC_013174.1 127928 128836 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A5478 ABC transporter, ATP- binding protein; ABC transporter 127928..128836 Jonesia denitrificans DSM 20603 8379311 YP_003160094.1 CDS Jden_0116 NC_013174.1 128839 129582 D PFAM: ABC-2 type transporter; KEGG: bca:BCE_5484 ABC transporter, permease protein, putative; ABC transporter 128839..129582 Jonesia denitrificans DSM 20603 8379312 YP_003160095.1 CDS Jden_0117 NC_013174.1 129594 130742 D PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: ccs:CCNA_01207 two-component sensor histidine kinase; histidine kinase dimerisation and phosphoacceptor region 129594..130742 Jonesia denitrificans DSM 20603 8379313 YP_003160096.1 CDS Jden_0118 NC_013174.1 130739 131356 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sus:Acid_1272 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family 130739..131356 Jonesia denitrificans DSM 20603 8379314 YP_003160097.1 CDS Jden_0119 NC_013174.1 131416 132462 D PFAM: protein of unknown function DUF218; KEGG: bce:BC3183 hypothetical protein; hypothetical protein 131416..132462 Jonesia denitrificans DSM 20603 8379315 YP_003160098.1 CDS Jden_0120 NC_013174.1 132485 133189 D PFAM: glutamine amidotransferase class-I; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase class-I; glutamine amidotransferase 132485..133189 Jonesia denitrificans DSM 20603 8379316 YP_003160099.1 CDS Jden_0121 NC_013174.1 133276 134379 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pap:PSPA7_1398 putative FMN oxidoreductase; NADH:flavin oxidoreductase 133276..134379 Jonesia denitrificans DSM 20603 8379317 YP_003160100.1 CDS Jden_0122 NC_013174.1 134411 134842 R hypothetical protein complement(134411..134842) Jonesia denitrificans DSM 20603 8379318 YP_003160101.1 CDS Jden_0123 NC_013174.1 135018 135716 D PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 135018..135716 Jonesia denitrificans DSM 20603 8379319 YP_003160102.1 CDS Jden_0124 NC_013174.1 135734 136246 R hypothetical protein complement(135734..136246) Jonesia denitrificans DSM 20603 8379320 YP_003160103.1 CDS Jden_0125 NC_013174.1 136324 136698 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mxa:MXAN_6848 thioredoxin; thioredoxin complement(136324..136698) Jonesia denitrificans DSM 20603 8379321 YP_003160104.1 CDS Jden_0126 NC_013174.1 136859 137725 R PFAM: Aldose 1-epimerase; KEGG: tbd:Tbd_2730 dihydroxyacid dehydratase; aldose 1-epimerase complement(136859..137725) Jonesia denitrificans DSM 20603 8379322 YP_003160105.1 CDS Jden_0127 NC_013174.1 137829 140156 R PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; Luciferase-like monooxygenase; KEGG: rme:Rmet_1775 FAD linked oxidase-like protein; FAD linked oxidase domain-containing protein complement(137829..140156) Jonesia denitrificans DSM 20603 8379323 YP_003160106.1 CDS Jden_0128 NC_013174.1 140285 141307 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sme:SM_b20014 putative transcriptional regulator protein; transcriptional regulator, LacI family complement(140285..141307) Jonesia denitrificans DSM 20603 8379324 YP_003160107.1 CDS Jden_0129 NC_013174.1 141465 143096 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mms:mma_2679 phosphoglycolate phosphatase; HAD-superfamily hydrolase 141465..143096 Jonesia denitrificans DSM 20603 8379325 YP_003160108.1 CDS Jden_0130 NC_013174.1 143114 144025 D hypothetical protein 143114..144025 Jonesia denitrificans DSM 20603 8379326 YP_003160109.1 CDS Jden_0131 NC_013174.1 144094 145851 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2240 putative ABC transporter, ATP- binding protein; ABC transporter 144094..145851 Jonesia denitrificans DSM 20603 8379327 YP_003160110.1 CDS Jden_0132 NC_013174.1 145853 146674 D PFAM: cobalt transport protein; KEGG: bcr:BCAH187_A2710 cobalt transport protein; cobalt transport protein 145853..146674 Jonesia denitrificans DSM 20603 8379328 YP_003160111.1 CDS Jden_0133 NC_013174.1 146812 148107 D hypothetical protein 146812..148107 Jonesia denitrificans DSM 20603 8379329 YP_003160112.1 CDS Jden_0134 NC_013174.1 148104 148871 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4515 ABC transporter related; ABC transporter 148104..148871 Jonesia denitrificans DSM 20603 8379330 YP_003160113.1 CDS Jden_0135 NC_013174.1 148868 149509 D hypothetical protein 148868..149509 Jonesia denitrificans DSM 20603 8379331 YP_003160114.1 CDS Jden_0136 NC_013174.1 149637 149936 D hypothetical protein 149637..149936 Jonesia denitrificans DSM 20603 8379332 YP_003160115.1 CDS Jden_0137 NC_013174.1 149948 150337 D KEGG: bja:blr5887 hypothetical protein; hypothetical protein 149948..150337 Jonesia denitrificans DSM 20603 8379333 YP_003160116.1 CDS Jden_0138 NC_013174.1 150334 151554 D KEGG: hypothetical protein; hypothetical protein 150334..151554 Jonesia denitrificans DSM 20603 8379334 YP_003160117.1 CDS Jden_0139 NC_013174.1 151613 152089 D hypothetical protein 151613..152089 Jonesia denitrificans DSM 20603 8379335 YP_003160118.1 CDS Jden_0140 NC_013174.1 152312 152584 D hypothetical protein 152312..152584 Jonesia denitrificans DSM 20603 8379336 YP_003160119.1 CDS Jden_0141 NC_013174.1 152633 153283 D PFAM: polysaccharide deacetylase; KEGG: rlt:Rleg2_5037 polysaccharide deacetylase; polysaccharide deacetylase 152633..153283 Jonesia denitrificans DSM 20603 8379337 YP_003160120.1 CDS Jden_0142 NC_013174.1 153308 154969 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: FAD binding domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(153308..154969) Jonesia denitrificans DSM 20603 8379338 YP_003160121.1 CDS Jden_0143 NC_013174.1 155140 155610 D KEGG: bcb:BCB4264_A1832 putative multidrug resistance protein; hypothetical protein 155140..155610 Jonesia denitrificans DSM 20603 8379339 YP_003160122.1 CDS Jden_0144 NC_013174.1 155594 156172 D PFAM: regulatory protein TetR; KEGG: bja:bll2216 transcriptional regulatory protein; TetR family transcriptional regulator 155594..156172 Jonesia denitrificans DSM 20603 8379340 YP_003160123.1 CDS Jden_0145 NC_013174.1 156223 157026 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pmy:Pmen_1266 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(156223..157026) Jonesia denitrificans DSM 20603 8379341 YP_003160124.1 CDS Jden_0146 NC_013174.1 157266 158522 D PFAM: amidinotransferase; KEGG: mlo:mll6733 arginine deiminase; Arginine deiminase 157266..158522 Jonesia denitrificans DSM 20603 8379342 YP_003160125.1 CDS Jden_0147 NC_013174.1 158623 158979 D hypothetical protein 158623..158979 Jonesia denitrificans DSM 20603 8379343 YP_003160126.1 CDS Jden_0148 NC_013174.1 158988 160253 D PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: gme:Gmet_1153 hypothetical protein; hypothetical protein 158988..160253 Jonesia denitrificans DSM 20603 8379344 YP_003160127.1 CDS Jden_0149 NC_013174.1 160244 161395 R KEGG: maq:Maqu_1895 cytochrome P450; cytochrome P450 complement(160244..161395) Jonesia denitrificans DSM 20603 8379345 YP_003160128.1 CDS Jden_0150 NC_013174.1 161392 164250 R PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: bte:BTH_II0944 mulitcopper oxidase domain- containing protein; nitrite reductase complement(161392..164250) Jonesia denitrificans DSM 20603 8379346 YP_003160129.1 CDS Jden_0151 NC_013174.1 164247 165341 R KEGG: mno:Mnod_2108 hypothetical protein; hypothetical protein complement(164247..165341) Jonesia denitrificans DSM 20603 8379347 YP_003160130.1 CDS Jden_0152 NC_013174.1 165338 166138 R KEGG: bcy:Bcer98_2973 putative transcriptional regulator; putative transcriptional regulator complement(165338..166138) Jonesia denitrificans DSM 20603 8379348 YP_003160131.1 CDS Jden_0153 NC_013174.1 166374 166673 D KEGG: ret:RHE_PF00520 hypothetical protein; hypothetical protein 166374..166673 Jonesia denitrificans DSM 20603 8379349 YP_003160132.1 CDS Jden_0154 NC_013174.1 166822 167133 R PFAM: protein of unknown function DUF156; KEGG: sat:SYN_00719 putative cytoplasmic protein; hypothetical protein complement(166822..167133) Jonesia denitrificans DSM 20603 8379350 YP_003160133.1 CDS Jden_0155 NC_013174.1 167286 169013 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: dal:Dalk_0198 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 167286..169013 Jonesia denitrificans DSM 20603 8379351 YP_003160134.1 CDS Jden_0156 NC_013174.1 169091 169270 D KEGG: hypothetical protein; hypothetical protein 169091..169270 Jonesia denitrificans DSM 20603 8379352 YP_003160135.1 CDS Jden_0157 NC_013174.1 169344 170018 D TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: bur:Bcep18194_A6105 3-methyladenine DNA glycosylase; DNA-3-methyladenine glycosylase 169344..170018 Jonesia denitrificans DSM 20603 8379353 YP_003160136.1 CDS Jden_0158 NC_013174.1 170037 170915 R TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: smt:Smal_1175 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(170037..170915) Jonesia denitrificans DSM 20603 8379354 YP_003160137.1 CDS Jden_0159 NC_013174.1 170946 171776 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dsh:Dshi_0712 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA 170946..171776 Jonesia denitrificans DSM 20603 8379355 YP_003160138.1 CDS Jden_0160 NC_013174.1 171858 172535 R KEGG: bra:BRADO6923 hypothetical protein; hypothetical protein complement(171858..172535) Jonesia denitrificans DSM 20603 8379356 YP_003160139.1 CDS Jden_0161 NC_013174.1 172853 173884 D hypothetical protein 172853..173884 Jonesia denitrificans DSM 20603 8379357 YP_003160140.1 CDS Jden_0163 NC_013174.1 174441 175340 R KEGG: mucin-associated surface protein (MASP); mucin-associated surface protein complement(174441..175340) Jonesia denitrificans DSM 20603 8381719 YP_003160141.1 CDS Jden_0164 NC_013174.1 175766 176305 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bba:Bd0177 peptidyl-prolyl cis-trans isomerase; Peptidylprolyl isomerase 175766..176305 Jonesia denitrificans DSM 20603 8379359 YP_003160142.1 CDS Jden_0165 NC_013174.1 176398 177276 D PFAM: Rhomboid family protein; KEGG: aba:Acid345_1881 rhomboid-like protein; rhomboid family protein 176398..177276 Jonesia denitrificans DSM 20603 8379360 YP_003160143.1 CDS Jden_0166 NC_013174.1 177308 177571 R PFAM: protein of unknown function UPF0233; hypothetical protein complement(177308..177571) Jonesia denitrificans DSM 20603 8379361 YP_003160144.1 CDS Jden_0167 NC_013174.1 177704 178465 D PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein 177704..178465 Jonesia denitrificans DSM 20603 8379362 YP_003160145.1 CDS Jden_0168 NC_013174.1 178582 179217 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: eli:ELI_06505 anthranilate/para-aminobenzoate synthase component II; glutamine amidotransferase of anthranilate synthase 178582..179217 Jonesia denitrificans DSM 20603 8379363 YP_003160146.1 CDS Jden_0169 NC_013174.1 179261 179461 D hypothetical protein 179261..179461 Jonesia denitrificans DSM 20603 8379364 YP_003160147.1 CDS Jden_0170 NC_013174.1 179667 181712 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase; serine/threonine protein kinase with PASTA sensor(s) complement(179667..181712) Jonesia denitrificans DSM 20603 8379365 YP_003160148.1 CDS Jden_0171 NC_013174.1 181706 183433 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bcy:Bcer98_2514 protein kinase; serine/threonine protein kinase complement(181706..183433) Jonesia denitrificans DSM 20603 8379366 YP_003160149.1 CDS Jden_0172 NC_013174.1 183430 184881 R PFAM: penicillin-binding protein transpeptidase; KEGG: sat:SYN_00551 cell elongation specific D,D- transpeptidase; peptidoglycan glycosyltransferase complement(183430..184881) Jonesia denitrificans DSM 20603 8379367 YP_003160150.1 CDS Jden_0173 NC_013174.1 184878 186569 R PFAM: cell cycle protein; KEGG: gbm:Gbem_0490 cell division protein FtsW; cell cycle protein complement(184878..186569) Jonesia denitrificans DSM 20603 8379368 YP_003160151.1 CDS Jden_0174 NC_013174.1 186573 188075 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: scl:sce6484 phosphoprotein phosphatase; protein serine/threonine phosphatase complement(186573..188075) Jonesia denitrificans DSM 20603 8379369 YP_003160152.1 CDS Jden_0175 NC_013174.1 188080 188538 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: afw:Anae109_3399 sigma-54 dependent trancsriptional regulator; FHA domain-containing protein complement(188080..188538) Jonesia denitrificans DSM 20603 8379370 YP_003160153.1 CDS Jden_0176 NC_013174.1 188563 189279 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ank:AnaeK_2044 FHA domain containing protein; FHA domain-containing protein complement(188563..189279) Jonesia denitrificans DSM 20603 8379371 YP_003160154.1 CDS Jden_0177 NC_013174.1 189591 191087 D hypothetical protein 189591..191087 Jonesia denitrificans DSM 20603 8381720 YP_003160155.1 CDS Jden_0178 NC_013174.1 191101 191958 D hypothetical protein 191101..191958 Jonesia denitrificans DSM 20603 8379373 YP_003160156.1 CDS Jden_0179 NC_013174.1 192011 192538 D PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bvi:Bcep1808_2207 protein tyrosine phosphatase; protein tyrosine phosphatase 192011..192538 Jonesia denitrificans DSM 20603 8379374 YP_003160157.1 CDS Jden_0180 NC_013174.1 192541 193740 D KEGG: mxa:MXAN_0055 hypothetical protein; hypothetical protein 192541..193740 Jonesia denitrificans DSM 20603 8379375 YP_003160158.1 CDS Jden_0181 NC_013174.1 193752 194918 D PFAM: aminotransferase class I and II; KEGG: scl:sce5648 aspartate transaminase; class I and II aminotransferase 193752..194918 Jonesia denitrificans DSM 20603 8379376 YP_003160159.1 CDS Jden_0182 NC_013174.1 195203 195460 D PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pfo:Pfl01_3423 sensor protein; transcriptional regulator, LuxR family 195203..195460 Jonesia denitrificans DSM 20603 8379377 YP_003160160.1 CDS Jden_0183 NC_013174.1 195468 195929 D PFAM: NUDIX hydrolase; KEGG: gur:Gura_2482 NUDIX hydrolase; NUDIX hydrolase 195468..195929 Jonesia denitrificans DSM 20603 8379378 YP_003160161.1 CDS Jden_0184 NC_013174.1 195938 196492 R PFAM: NADPH-dependent FMN reductase; KEGG: ank:AnaeK_3311 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(195938..196492) Jonesia denitrificans DSM 20603 8379379 YP_003160162.1 CDS Jden_0185 NC_013174.1 196636 197490 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: glo:Glov_2906 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein TIM barrel complement(196636..197490) Jonesia denitrificans DSM 20603 8379380 YP_003160163.1 CDS Jden_0186 NC_013174.1 197517 198311 R TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bce:BC5413 pyridoxal kinase; phosphomethylpyrimidine kinase complement(197517..198311) Jonesia denitrificans DSM 20603 8379381 YP_003160164.1 CDS Jden_0187 NC_013174.1 198359 199816 R KEGG: cak:Caul_4086 glucan 1,4-alpha-glucosidase; glucoamylase-related glycosyl hydrolase-like protein complement(198359..199816) Jonesia denitrificans DSM 20603 8379382 YP_003160165.1 CDS Jden_0188 NC_013174.1 199922 202741 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tmz:Tmz1t_1159 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 199922..202741 Jonesia denitrificans DSM 20603 8379383 YP_003160166.1 CDS Jden_0189 NC_013174.1 202834 205167 R KEGG: xfn:XfasM23_1392 5- methyltetrahydropteroyltriglutamate--homocysteine S- methyltransferase; TIGRFAM: 5- methyltetrahydropteroyltriglutamate/homocysteine S- methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(202834..205167) Jonesia denitrificans DSM 20603 8379384 YP_003160167.1 CDS Jden_0190 NC_013174.1 205279 206298 R PFAM: methylenetetrahydrofolate reductase; KEGG: ppd:Ppro_1089 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(205279..206298) Jonesia denitrificans DSM 20603 8379385 YP_003160168.1 CDS Jden_0191 NC_013174.1 206355 206543 R hypothetical protein complement(206355..206543) Jonesia denitrificans DSM 20603 8379386 YP_003160169.1 CDS Jden_0192 NC_013174.1 206654 207280 D hypothetical protein 206654..207280 Jonesia denitrificans DSM 20603 8379387 YP_003160170.1 CDS Jden_0193 NC_013174.1 207362 209251 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bur:Bcep18194_B1962 ABC efflux pump, fused ATPase and inner membrane subunits; ABC transporter 207362..209251 Jonesia denitrificans DSM 20603 8379388 YP_003160171.1 CDS Jden_0194 NC_013174.1 209248 210951 D KEGG: bch:Bcen2424_4081 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 209248..210951 Jonesia denitrificans DSM 20603 8379389 YP_003160172.1 CDS Jden_0195 NC_013174.1 211098 211271 D PFAM: CsbD family protein; KEGG: sme:SMa2071 hypothetical protein; CsbD family protein 211098..211271 Jonesia denitrificans DSM 20603 8379390 YP_003160173.1 CDS Jden_0196 NC_013174.1 211307 212905 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3575 major facilitator transporter; EmrB/QacA subfamily drug resistance transporter complement(211307..212905) Jonesia denitrificans DSM 20603 8379391 YP_003160174.1 CDS Jden_0197 NC_013174.1 212915 214018 R KEGG: bam:Bamb_1824 ATPase-like protein; ATPase-like protein complement(212915..214018) Jonesia denitrificans DSM 20603 8379392 YP_003160175.1 CDS Jden_0198 NC_013174.1 214156 216405 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: scl:sce2601 Beta-glucosidase; glycoside hydrolase family 3 214156..216405 Jonesia denitrificans DSM 20603 8379393 YP_003160176.1 CDS Jden_0199 NC_013174.1 216599 217102 D KEGG: bcy:Bcer98_1417 hypothetical protein; hypothetical protein 216599..217102 Jonesia denitrificans DSM 20603 8379394 YP_003160177.1 CDS Jden_0200 NC_013174.1 217203 218411 R PFAM: Methionine synthase vitamin-B12 independent; KEGG: dsh:Dshi_2235 methionine synthase vitamin-B12 independent; Methionine synthase vitamin-B12 independent complement(217203..218411) Jonesia denitrificans DSM 20603 8379395 YP_003160178.1 CDS Jden_0201 NC_013174.1 218485 218970 R hypothetical protein complement(218485..218970) Jonesia denitrificans DSM 20603 8379396 YP_003160179.1 CDS Jden_0202 NC_013174.1 219272 220030 D PFAM: protein of unknown function DUF540; KEGG: vha:VIBHAR_01310 putative sulfate transport protein CysZ; hypothetical protein 219272..220030 Jonesia denitrificans DSM 20603 8379397 YP_003160180.1 CDS Jden_0203 NC_013174.1 220027 220440 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pzu:PHZ_c1600 hypothetical protein; antibiotic biosynthesis monooxygenase complement(220027..220440) Jonesia denitrificans DSM 20603 8379398 YP_003160181.1 CDS Jden_0204 NC_013174.1 220462 221397 D PFAM: HpcH/HpaI aldolase; KEGG: bvi:Bcep1808_5394 HpcH/HpaI aldolase; HpcH/HpaI aldolase 220462..221397 Jonesia denitrificans DSM 20603 8379399 YP_003160182.1 CDS Jden_0205 NC_013174.1 221405 221764 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: csa:Csal_2488 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 221405..221764 Jonesia denitrificans DSM 20603 8379400 YP_003160183.1 CDS Jden_0206 NC_013174.1 221862 222074 D hypothetical protein 221862..222074 Jonesia denitrificans DSM 20603 8379401 YP_003160184.1 CDS Jden_0207 NC_013174.1 222160 222948 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: afw:Anae109_1109 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 222160..222948 Jonesia denitrificans DSM 20603 8379402 YP_003160185.1 CDS Jden_0208 NC_013174.1 223085 224086 D PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein; luciferase-like monooxygenase 223085..224086 Jonesia denitrificans DSM 20603 8379403 YP_003160186.1 CDS Jden_0209 NC_013174.1 224179 224781 R KEGG: Hypothetical protein CBG09473; hypothetical protein complement(224179..224781) Jonesia denitrificans DSM 20603 8379404 YP_003160187.1 CDS Jden_0210 NC_013174.1 224854 225396 R KEGG: hypothetical protein; hypothetical protein complement(224854..225396) Jonesia denitrificans DSM 20603 8379405 YP_003160188.1 CDS Jden_0211 NC_013174.1 225393 225608 R hypothetical protein complement(225393..225608) Jonesia denitrificans DSM 20603 8379406 YP_003160189.1 CDS Jden_0212 NC_013174.1 225607 226407 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 225607..226407 Jonesia denitrificans DSM 20603 8379407 YP_003160190.1 CDS Jden_0213 NC_013174.1 226351 226539 R hypothetical protein complement(226351..226539) Jonesia denitrificans DSM 20603 8379408 YP_003160191.1 CDS Jden_0214 NC_013174.1 226552 228228 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpb:RPB_0883 putative FAD-binding dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(226552..228228) Jonesia denitrificans DSM 20603 8379409 YP_003160192.1 CDS Jden_0215 NC_013174.1 228409 230772 R KEGG: cja:CJA_3559 rhamnogalacturonan lyase, rgl11A; hypothetical protein complement(228409..230772) Jonesia denitrificans DSM 20603 8379410 YP_003160193.1 CDS Jden_0216 NC_013174.1 231803 232291 D hypothetical protein 231803..232291 Jonesia denitrificans DSM 20603 8379411 YP_003160194.1 CDS Jden_0217 NC_013174.1 232310 233188 D KEGG: aba:Acid345_0308 secretion protein HlyD; hypothetical protein 232310..233188 Jonesia denitrificans DSM 20603 8379412 YP_003160195.1 CDS Jden_0218 NC_013174.1 233185 233880 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1760 lipoprotein releasing system, ATP-binding protein; ABC transporter 233185..233880 Jonesia denitrificans DSM 20603 8379413 YP_003160196.1 CDS Jden_0219 NC_013174.1 233877 235070 D PFAM: protein of unknown function DUF214; KEGG: sgl:SG1459 putative ABC transporter ATP- binding component; hypothetical protein 233877..235070 Jonesia denitrificans DSM 20603 8379414 YP_003160197.1 CDS Jden_0220 NC_013174.1 235042 235215 R hypothetical protein complement(235042..235215) Jonesia denitrificans DSM 20603 8379415 YP_003160198.1 CDS Jden_0221 NC_013174.1 235636 236397 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c1068 ABC transporter, ATP-binding protein; ABC transporter 235636..236397 Jonesia denitrificans DSM 20603 8379416 YP_003160199.1 CDS Jden_0222 NC_013174.1 236390 237655 D KEGG: bmj:BMULJ_02976 thiol:disulfide interchange protein; hypothetical protein 236390..237655 Jonesia denitrificans DSM 20603 8379417 YP_003160200.1 CDS Jden_0223 NC_013174.1 237652 238293 D hypothetical protein 237652..238293 Jonesia denitrificans DSM 20603 8379418 YP_003160201.1 CDS Jden_0224 NC_013174.1 238403 238726 D hypothetical protein 238403..238726 Jonesia denitrificans DSM 20603 8379419 YP_003160202.1 CDS Jden_0225 NC_013174.1 238809 240020 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bha:BH3008 hypothetical protein; amidohydrolase complement(238809..240020) Jonesia denitrificans DSM 20603 8379420 YP_003160203.1 CDS Jden_0226 NC_013174.1 240110 241258 D KEGG: aba:Acid345_2780 N-acetylglucosamine 6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 240110..241258 Jonesia denitrificans DSM 20603 8379421 YP_003160204.1 CDS Jden_0227 NC_013174.1 241823 242749 D KEGG: kinesin K39; hypothetical protein 241823..242749 Jonesia denitrificans DSM 20603 8379422 YP_003160205.1 CDS Jden_0228 NC_013174.1 242770 243744 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_0602 ABC transporter related; ABC transporter 242770..243744 Jonesia denitrificans DSM 20603 8379423 YP_003160206.1 CDS Jden_0229 NC_013174.1 243741 244493 D KEGG: pfl:PFL_2798 ABC transporter, permease protein, putative; hypothetical protein 243741..244493 Jonesia denitrificans DSM 20603 8379424 YP_003160207.1 CDS Jden_0230 NC_013174.1 244493 245281 D PFAM: ABC-2 type transporter; KEGG: bac:BamMC406_1511 ABC transporter; ABC transporter 244493..245281 Jonesia denitrificans DSM 20603 8379425 YP_003160208.1 CDS Jden_0231 NC_013174.1 245278 246303 D PFAM: GTPase EngC; KEGG: cak:Caul_1373 ribosome small subunit- dependent GTPase A; GTPase EngC 245278..246303 Jonesia denitrificans DSM 20603 8379426 YP_003160209.1 CDS Jden_0232 NC_013174.1 246333 247772 R PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: sde:Sde_3037 glycosyl hydrolase; beta-N-acetylhexosaminidase complement(246333..247772) Jonesia denitrificans DSM 20603 8379427 YP_003160210.1 CDS Jden_0233 NC_013174.1 247865 249022 D PFAM: ROK family protein; KEGG: bha:BH2758 transcriptional repressor of the xylose operon; ROK family protein 247865..249022 Jonesia denitrificans DSM 20603 8379428 YP_003160211.1 CDS Jden_0234 NC_013174.1 249069 250307 D PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein; extracellular solute-binding protein 249069..250307 Jonesia denitrificans DSM 20603 8379429 YP_003160212.1 CDS Jden_0235 NC_013174.1 250394 251386 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2296 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 250394..251386 Jonesia denitrificans DSM 20603 8379430 YP_003160213.1 CDS Jden_0236 NC_013174.1 251383 252198 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_3667 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 251383..252198 Jonesia denitrificans DSM 20603 8379431 YP_003160214.1 CDS Jden_0237 NC_013174.1 252213 252995 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rsq:Rsph17025_4131 hypothetical protein; glucosamine-6-phosphate isomerase 252213..252995 Jonesia denitrificans DSM 20603 8379432 YP_003160215.1 CDS Jden_0238 NC_013174.1 252980 253951 D PFAM: ROK family protein; KEGG: sfu:Sfum_1953 ROK family protein; ROK family protein 252980..253951 Jonesia denitrificans DSM 20603 8379433 YP_003160216.1 CDS Jden_0239 NC_013174.1 254049 254411 D PFAM: protein of unknown function DUF488; KEGG: abm:ABSDF0629 hypothetical protein; hypothetical protein 254049..254411 Jonesia denitrificans DSM 20603 8379434 YP_003160217.1 CDS Jden_0240 NC_013174.1 254420 258727 R KEGG: eca:ECA2006 ATP-dependent RNA helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase; ATP-dependent helicase HrpA complement(254420..258727) Jonesia denitrificans DSM 20603 8379435 YP_003160218.1 CDS Jden_0241 NC_013174.1 258903 260558 D PFAM: extracellular solute-binding protein family 5; KEGG: peptide ABC transporter; family 5 extracellular solute-binding protein 258903..260558 Jonesia denitrificans DSM 20603 8379436 YP_003160219.1 CDS Jden_0242 NC_013174.1 260564 261514 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter; K02033 peptide/nickel transport system permease protein; binding-protein-dependent transport system inner membrane protein 260564..261514 Jonesia denitrificans DSM 20603 8379437 YP_003160220.1 CDS Jden_0243 NC_013174.1 261507 262313 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppC; ABC transporter membrane spanning protein (dipeptide); K02034 peptide/nickel transport system permease protein; binding-protein-dependent transport system inner membrane protein 261507..262313 Jonesia denitrificans DSM 20603 8379438 YP_003160221.1 CDS Jden_0244 NC_013174.1 262310 263905 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcj:BCAS0451 ABC transporter ATP-binding protein; ABC transporter 262310..263905 Jonesia denitrificans DSM 20603 8379439 YP_003160222.1 CDS Jden_0245 NC_013174.1 264021 264674 D PFAM: cyclase/dehydrase; KEGG: afw:Anae109_1003 cyclase/dehydrase; cyclase/dehydrase 264021..264674 Jonesia denitrificans DSM 20603 8379440 YP_003160223.1 CDS Jden_0246 NC_013174.1 264730 265053 R hypothetical protein complement(264730..265053) Jonesia denitrificans DSM 20603 8379441 YP_003160224.1 CDS Jden_0247 NC_013174.1 265054 265443 R hypothetical protein complement(265054..265443) Jonesia denitrificans DSM 20603 8379442 YP_003160225.1 CDS Jden_0248 NC_013174.1 265526 266431 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bvi:Bcep1808_5892 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 265526..266431 Jonesia denitrificans DSM 20603 8379443 YP_003160226.1 CDS Jden_0249 NC_013174.1 266488 267024 D hypothetical protein 266488..267024 Jonesia denitrificans DSM 20603 8379444 YP_003160227.1 CDS Jden_0250 NC_013174.1 267018 267467 R KEGG: ent:Ent638_1237 cell envelope integrity inner membrane protein TolA; hypothetical protein complement(267018..267467) Jonesia denitrificans DSM 20603 8379445 YP_003160228.1 CDS Jden_0251 NC_013174.1 267634 269208 D PFAM: sodium:neurotransmitter symporter; KEGG: pmu:PM0718 hypothetical protein; sodium:neurotransmitter symporter 267634..269208 Jonesia denitrificans DSM 20603 8379446 YP_003160229.1 CDS Jden_0252 NC_013174.1 269208 269378 D KEGG: aci:ACIAD3640 hypothetical protein; hypothetical protein 269208..269378 Jonesia denitrificans DSM 20603 8379447 YP_003160230.1 CDS Jden_0253 NC_013174.1 269424 269795 R PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hypothetical protein; MazG nucleotide pyrophosphohydrolase complement(269424..269795) Jonesia denitrificans DSM 20603 8379448 YP_003160231.1 CDS Jden_0254 NC_013174.1 269842 271047 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: ank:AnaeK_0746 protein of unknown function DUF125 transmembrane; hypothetical protein 269842..271047 Jonesia denitrificans DSM 20603 8379449 YP_003160232.1 CDS Jden_0255 NC_013174.1 271117 272040 R KEGG: hypothetical protein; hypothetical protein complement(271117..272040) Jonesia denitrificans DSM 20603 8379450 YP_003160233.1 CDS Jden_0256 NC_013174.1 272115 273461 R PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA2269 hypothetical protein; major facilitator superfamily protein complement(272115..273461) Jonesia denitrificans DSM 20603 8379451 YP_003160234.1 CDS Jden_0257 NC_013174.1 273541 273882 D PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c0779 acetyltransferase; N-acetyltransferase GCN5 273541..273882 Jonesia denitrificans DSM 20603 8379452 YP_003160235.1 CDS Jden_0258 NC_013174.1 274238 275893 R TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: ccs:CCNA_00083 phosphoglucomutase/phosphomannomutase; phosphoglucomutase complement(274238..275893) Jonesia denitrificans DSM 20603 8379453 YP_003160236.1 CDS Jden_0259 NC_013174.1 275993 276817 D hypothetical protein 275993..276817 Jonesia denitrificans DSM 20603 8379454 YP_003160237.1 CDS Jden_0260 NC_013174.1 276965 277786 D PFAM: glycosyl transferase family 2; KEGG: bha:BH2769 dolichyl-phosphate mannose synthase; family 2 glycosyl transferase 276965..277786 Jonesia denitrificans DSM 20603 8379455 YP_003160238.1 CDS Jden_0261 NC_013174.1 277783 278628 R PFAM: alpha/beta hydrolase fold protein; KEGG: alpha/beta hydrolase fold protein protein; alpha/beta hydrolase fold protein complement(277783..278628) Jonesia denitrificans DSM 20603 8379456 YP_003160239.1 CDS Jden_0262 NC_013174.1 278650 278931 R KEGG: dsh:Dshi_3850 hypothetical protein; hypothetical protein complement(278650..278931) Jonesia denitrificans DSM 20603 8379457 YP_003160240.1 CDS Jden_0263 NC_013174.1 278993 281347 R KEGG: bha:BH0549 hypothetical protein; hypothetical protein complement(278993..281347) Jonesia denitrificans DSM 20603 8379458 YP_003160241.1 CDS Jden_0264 NC_013174.1 281372 282592 R PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: mex:Mext_1567 putative lipid kinase; diacylglycerol kinase catalytic subunit complement(281372..282592) Jonesia denitrificans DSM 20603 8379459 YP_003160242.1 CDS Jden_0265 NC_013174.1 282648 283928 D KEGG: gme:Gmet_3528 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase 282648..283928 Jonesia denitrificans DSM 20603 8379460 YP_003160243.1 CDS Jden_0266 NC_013174.1 283925 284725 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: eca:ECA4428 sugar phosphatase; HAD-superfamily hydrolase 283925..284725 Jonesia denitrificans DSM 20603 8379461 YP_003160244.1 CDS Jden_0267 NC_013174.1 285051 286439 D PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_C_1045 alpha-glucosides-binding periplasmic protein AglE precursor; extracellular solute-binding protein 285051..286439 Jonesia denitrificans DSM 20603 8379462 YP_003160245.1 CDS Jden_0268 NC_013174.1 286608 287612 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2911 ABC alpha-glucoside transporter inner membrane binding protein; binding-protein-dependent transport system inner membrane protein 286608..287612 Jonesia denitrificans DSM 20603 8379463 YP_003160246.1 CDS Jden_0269 NC_013174.1 287609 288532 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0294 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 287609..288532 Jonesia denitrificans DSM 20603 8379464 YP_003160247.1 CDS Jden_0270 NC_013174.1 288542 289504 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mpo:Mpop_1697 NAD(P)H quinone oxidoreductase, PIG3 family; NAD(P)H quinone oxidoreductase complement(288542..289504) Jonesia denitrificans DSM 20603 8379465 YP_003160248.1 CDS Jden_0272 NC_013174.1 289744 293952 D PFAM: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: ATPase, AAA family protein; putative sensor 289744..293952 Jonesia denitrificans DSM 20603 8381721 YP_003160249.1 CDS Jden_0273 NC_013174.1 293993 294442 D PFAM: Roadblock/LC7 family protein; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 293993..294442 Jonesia denitrificans DSM 20603 8379467 YP_003160250.1 CDS Jden_0274 NC_013174.1 294456 294863 D PFAM: protein of unknown function DUF742; hypothetical protein 294456..294863 Jonesia denitrificans DSM 20603 8379468 YP_003160251.1 CDS Jden_0275 NC_013174.1 294844 295461 D PFAM: protein of unknown function ATP binding; KEGG: lch:Lcho_0656 small GTP-binding protein; hypothetical protein 294844..295461 Jonesia denitrificans DSM 20603 8379469 YP_003160252.1 CDS Jden_0276 NC_013174.1 295763 296791 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family 295763..296791 Jonesia denitrificans DSM 20603 8381722 YP_003160253.1 CDS Jden_0277 NC_013174.1 296788 298323 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related; ABC transporter 296788..298323 Jonesia denitrificans DSM 20603 8379471 YP_003160254.1 CDS Jden_0278 NC_013174.1 298643 299629 D KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 298643..299629 Jonesia denitrificans DSM 20603 8379472 YP_003160255.1 CDS Jden_0279 NC_013174.1 299744 301324 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related; ABC transporter 299744..301324 Jonesia denitrificans DSM 20603 8379473 YP_003160256.1 CDS Jden_0280 NC_013174.1 301317 302390 D PFAM: inner-membrane translocator; KEGG: bmj:BMULJ_05565 simple sugar transport system permease protein; monosaccharide-transporting ATPase 301317..302390 Jonesia denitrificans DSM 20603 8379474 YP_003160257.1 CDS Jden_0281 NC_013174.1 302387 303421 D PFAM: inner-membrane translocator; KEGG: bvi:Bcep1808_6549 inner membrane ABC transporter permease protein YjfF; monosaccharide-transporting ATPase 302387..303421 Jonesia denitrificans DSM 20603 8379475 YP_003160258.1 CDS Jden_0282 NC_013174.1 303545 305848 R KEGG: sus:Acid_6846 NHL repeat-containing protein; hypothetical protein complement(303545..305848) Jonesia denitrificans DSM 20603 8379476 YP_003160259.1 CDS Jden_0283 NC_013174.1 306012 306740 D TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH4010 hypothetical protein; sortase family protein 306012..306740 Jonesia denitrificans DSM 20603 8379477 YP_003160260.1 CDS Jden_0284 NC_013174.1 306740 306895 D hypothetical protein 306740..306895 Jonesia denitrificans DSM 20603 8379478 YP_003160261.1 CDS Jden_0285 NC_013174.1 306909 307313 D PFAM: protein of unknown function DUF419; KEGG: dal:Dalk_4246 protein of unknown function DUF419; hypothetical protein 306909..307313 Jonesia denitrificans DSM 20603 8379479 YP_003160262.1 CDS Jden_0286 NC_013174.1 307597 308919 D PFAM: protein of unknown function DUF1212; KEGG: smd:Smed_3002 protein of unknown function DUF1212; hypothetical protein 307597..308919 Jonesia denitrificans DSM 20603 8379480 YP_003160263.1 CDS Jden_0287 NC_013174.1 309289 309894 D PFAM: protein of unknown function DUF305; KEGG: hne:HNE_1481 hypothetical protein; hypothetical protein 309289..309894 Jonesia denitrificans DSM 20603 8381723 YP_003160264.1 CDS Jden_0288 NC_013174.1 309943 310884 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain-containing protein 309943..310884 Jonesia denitrificans DSM 20603 8379482 YP_003160265.1 CDS Jden_0289 NC_013174.1 310923 312149 D PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter; major facilitator superfamily protein 310923..312149 Jonesia denitrificans DSM 20603 8379483 YP_003160266.1 CDS Jden_0290 NC_013174.1 312141 312731 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: pol:Bpro_1637 methylated-DNA--protein- cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(312141..312731) Jonesia denitrificans DSM 20603 8379484 YP_003160267.1 CDS Jden_0291 NC_013174.1 313105 313824 D PFAM: SNARE associated Golgi protein; KEGG: pzu:PHZ_c3071 alkaline phosphatase; hypothetical protein 313105..313824 Jonesia denitrificans DSM 20603 8381724 YP_003160268.1 CDS Jden_0292 NC_013174.1 313832 315373 R PFAM: BCCT transporter; KEGG: ppw:PputW619_2676 choline/carnitine/betaine transporter; BCCT transporter complement(313832..315373) Jonesia denitrificans DSM 20603 8379486 YP_003160269.1 CDS Jden_0293 NC_013174.1 315381 315545 R hypothetical protein complement(315381..315545) Jonesia denitrificans DSM 20603 8379487 YP_003160270.1 CDS Jden_0294 NC_013174.1 315595 316236 D hypothetical protein 315595..316236 Jonesia denitrificans DSM 20603 8379488 YP_003160271.1 CDS Jden_0296 NC_013174.1 316986 318524 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ank:AnaeK_0842 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(316986..318524) Jonesia denitrificans DSM 20603 8381726 YP_003160272.1 CDS Jden_0297 NC_013174.1 318620 319570 D PFAM: periplasmic solute binding protein; KEGG: yen:YE1900 periplasmic-binding protein; periplasmic solute binding protein 318620..319570 Jonesia denitrificans DSM 20603 8379490 YP_003160273.1 CDS Jden_0298 NC_013174.1 319567 320352 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_0248 ABC transporter related; ABC transporter 319567..320352 Jonesia denitrificans DSM 20603 8379491 YP_003160274.1 CDS Jden_0299 NC_013174.1 320345 321244 D PFAM: ABC-3 protein; transport system permease protein; KEGG: hit:NTHI0477 putative ABC-type chelated iron transport system, permease component; ABC transporter 320345..321244 Jonesia denitrificans DSM 20603 8379492 YP_003160275.1 CDS Jden_0300 NC_013174.1 321254 321493 R hypothetical protein complement(321254..321493) Jonesia denitrificans DSM 20603 8379493 YP_003160276.1 CDS Jden_0301 NC_013174.1 321837 322040 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: smt:Smal_2965 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(321837..322040) Jonesia denitrificans DSM 20603 8379494 YP_003160277.1 CDS Jden_0302 NC_013174.1 322236 322916 R PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_1217 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 complement(322236..322916) Jonesia denitrificans DSM 20603 8379495 YP_003160278.1 CDS Jden_0303 NC_013174.1 323162 324505 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator transporter; major facilitator superfamily protein 323162..324505 Jonesia denitrificans DSM 20603 8379496 YP_003160279.1 CDS Jden_0304 NC_013174.1 324546 324857 R hypothetical protein complement(324546..324857) Jonesia denitrificans DSM 20603 8379497 YP_003160280.1 CDS Jden_0305 NC_013174.1 324876 325670 D KEGG: bra:BRADO3689 hypothetical protein; hypothetical protein 324876..325670 Jonesia denitrificans DSM 20603 8379498 YP_003160281.1 CDS Jden_0306 NC_013174.1 325706 326614 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mrd:Mrad2831_5773 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 325706..326614 Jonesia denitrificans DSM 20603 8379499 YP_003160282.1 CDS Jden_0307 NC_013174.1 326611 327624 R KEGG: vha:VIBHAR_06943 hypothetical protein; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family complement(326611..327624) Jonesia denitrificans DSM 20603 8379500 YP_003160283.1 CDS Jden_0308 NC_013174.1 327697 328527 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 putative sugar transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(327697..328527) Jonesia denitrificans DSM 20603 8379501 YP_003160284.1 CDS Jden_0309 NC_013174.1 328529 329443 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC sugar transporter, inner membrane subunit; K02025 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(328529..329443) Jonesia denitrificans DSM 20603 8379502 YP_003160285.1 CDS Jden_0310 NC_013174.1 329533 330855 R PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein complement(329533..330855) Jonesia denitrificans DSM 20603 8379503 YP_003160286.1 CDS Jden_0311 NC_013174.1 331079 333214 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 331079..333214 Jonesia denitrificans DSM 20603 8379504 YP_003160287.1 CDS Jden_0312 NC_013174.1 333290 334060 D PFAM: NERD domain protein; KEGG: asa:ASA_2404 hypothetical protein; NERD domain-containing protein 333290..334060 Jonesia denitrificans DSM 20603 8379505 YP_003160288.1 CDS Jden_0313 NC_013174.1 334118 334378 R hypothetical protein complement(334118..334378) Jonesia denitrificans DSM 20603 8379506 YP_003160289.1 CDS Jden_0314 NC_013174.1 334655 335746 D TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; KEGG: cvi:CV_3164 thiamin-binding periplasmic protein; ABC transporter substrate-binding protein 334655..335746 Jonesia denitrificans DSM 20603 8379507 YP_003160290.1 CDS Jden_0315 NC_013174.1 335703 337421 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3245 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 335703..337421 Jonesia denitrificans DSM 20603 8379508 YP_003160291.1 CDS Jden_0316 NC_013174.1 337418 338446 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2699 ABC transporter ATP-binding protein; ABC transporter 337418..338446 Jonesia denitrificans DSM 20603 8379509 YP_003160292.1 CDS Jden_0317 NC_013174.1 338471 338779 D KEGG: nmu:Nmul_A1876 hypothetical protein; hypothetical protein 338471..338779 Jonesia denitrificans DSM 20603 8379510 YP_003160293.1 CDS Jden_0318 NC_013174.1 339056 340546 D PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: pde:Pden_3115 protein of unknown function DUF21; hypothetical protein 339056..340546 Jonesia denitrificans DSM 20603 8379511 YP_003160294.1 CDS Jden_0319 NC_013174.1 340543 341571 D PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: shl:Shal_2700 hypothetical protein; hypothetical protein 340543..341571 Jonesia denitrificans DSM 20603 8379512 YP_003160295.1 CDS Jden_0321 NC_013174.1 342258 342764 D KEGG: sew:SeSA_B0041 TniAdelta1; TniAdelta1 342258..342764 Jonesia denitrificans DSM 20603 8381727 YP_003160296.1 CDS Jden_0322 NC_013174.1 342823 343344 R PFAM: protein of unknown function UPF0157; KEGG: bha:BH1888 hypothetical protein; hypothetical protein complement(342823..343344) Jonesia denitrificans DSM 20603 8379514 YP_003160297.1 CDS Jden_0323 NC_013174.1 343438 343956 D TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: rme:Rmet_0568 adenylate cyclase; adenylyl cyclase CyaB 343438..343956 Jonesia denitrificans DSM 20603 8379515 YP_003160298.1 CDS Jden_0324 NC_013174.1 344527 346269 R KEGG: hypothetical protein; PFAM: Ricin B lectin; SMART: Ricin B lectin; glucan endo-1,3-beta-D-glucosidase complement(344527..346269) Jonesia denitrificans DSM 20603 8379516 YP_003160299.1 CDS Jden_0325 NC_013174.1 346378 347460 R hypothetical protein complement(346378..347460) Jonesia denitrificans DSM 20603 8379517 YP_003160300.1 CDS Jden_0326 NC_013174.1 347527 348504 R PFAM: Bile acid:sodium symporter; KEGG: ccs:CCNA_01729 transporter, sodium/bile acid symporter family; bile acid:sodium symporter complement(347527..348504) Jonesia denitrificans DSM 20603 8379518 YP_003160301.1 CDS Jden_0327 NC_013174.1 348674 349300 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: pde:Pden_1253 protein of unknown function DUF125, transmembrane; hypothetical protein 348674..349300 Jonesia denitrificans DSM 20603 8379519 YP_003160302.1 CDS Jden_0328 NC_013174.1 349513 349953 D PFAM: Domain of unknown function DUF1801; KEGG: sal:Sala_0493 hypothetical protein; hypothetical protein 349513..349953 Jonesia denitrificans DSM 20603 8379520 YP_003160303.1 CDS Jden_0329 NC_013174.1 350232 351569 D PFAM: Pectate lyase; Ricin B lectin; KEGG: pectate lyase, putative; pectate lyase 350232..351569 Jonesia denitrificans DSM 20603 8379521 YP_003160304.1 CDS Jden_0330 NC_013174.1 351747 353021 D PFAM: Peptidase M23; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pla:Plav_1754 peptidase M23B; peptidase M23 351747..353021 Jonesia denitrificans DSM 20603 8379522 YP_003160305.1 CDS Jden_0331 NC_013174.1 353094 353237 R hypothetical protein complement(353094..353237) Jonesia denitrificans DSM 20603 8379523 YP_003160306.1 CDS Jden_0332 NC_013174.1 353299 353562 R KEGG: set:SEN1240 hypothetical protein; hypothetical protein complement(353299..353562) Jonesia denitrificans DSM 20603 8379524 YP_003160307.1 CDS Jden_0333 NC_013174.1 353701 355317 R KEGG: bcb:BCB4264_A2187 hypothetical membrane spanning protein; hypothetical protein complement(353701..355317) Jonesia denitrificans DSM 20603 8379525 YP_003160308.1 CDS Jden_0334 NC_013174.1 355441 355866 D PFAM: OsmC family protein; KEGG: rce:RC1_2171 organic hydroperoxide resistance protein; OsmC family protein 355441..355866 Jonesia denitrificans DSM 20603 8379526 YP_003160309.1 CDS Jden_0335 NC_013174.1 356013 358121 D PFAM: MMPL domain protein; KEGG: bcy:Bcer98_1512 MmpL domain-containing protein; MMPL domain-containing protein 356013..358121 Jonesia denitrificans DSM 20603 8379527 YP_003160310.1 CDS Jden_0336 NC_013174.1 358118 358462 D KEGG: mca:MCA0704 hypothetical protein; hypothetical protein 358118..358462 Jonesia denitrificans DSM 20603 8379528 YP_003160311.1 CDS Jden_0337 NC_013174.1 358475 359335 R PFAM: UbiA prenyltransferase; KEGG: gbm:Gbem_0232 4-hydroxybenzoate polyprenyltransferase; UbiA prenyltransferase complement(358475..359335) Jonesia denitrificans DSM 20603 8379529 YP_003160312.1 CDS Jden_0338 NC_013174.1 359332 359694 R TIGRFAM: lycopene cyclase domain protein; lycopene cyclase domain-containing protein complement(359332..359694) Jonesia denitrificans DSM 20603 8379530 YP_003160313.1 CDS Jden_0339 NC_013174.1 359691 360005 R TIGRFAM: lycopene cyclase domain protein; lycopene cyclase domain-containing protein complement(359691..360005) Jonesia denitrificans DSM 20603 8379531 YP_003160314.1 CDS Jden_0340 NC_013174.1 360007 361635 R TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase; phytoene desaturase complement(360007..361635) Jonesia denitrificans DSM 20603 8379532 YP_003160315.1 CDS Jden_0341 NC_013174.1 361632 362570 R PFAM: Squalene/phytoene synthase; KEGG: scl:sce0581 phytoene synthase; squalene/phytoene synthase complement(361632..362570) Jonesia denitrificans DSM 20603 8379533 YP_003160316.1 CDS Jden_0342 NC_013174.1 362567 363604 R PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A0510 dimethylallyltransferase; polyprenyl synthetase complement(362567..363604) Jonesia denitrificans DSM 20603 8379534 YP_003160317.1 CDS Jden_0343 NC_013174.1 363594 364190 R KEGG: stt:t2957 isopentenyl-diphosphate delta- isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase complement(363594..364190) Jonesia denitrificans DSM 20603 8379535 YP_003160318.1 CDS Jden_0344 NC_013174.1 364334 364885 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cak:Caul_0809 MarR family transcriptional regulator; transcriptional regulator, MarR family 364334..364885 Jonesia denitrificans DSM 20603 8379536 YP_003160319.1 CDS Jden_0347 NC_013174.1 365671 367404 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter; ABC transporter 365671..367404 Jonesia denitrificans DSM 20603 8381729 YP_003160320.1 CDS Jden_0348 NC_013174.1 367401 369392 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter; ABC transporter 367401..369392 Jonesia denitrificans DSM 20603 8379538 YP_003160321.1 CDS Jden_0349 NC_013174.1 369630 371489 D KEGG: gme:Gmet_3532 chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 369630..371489 Jonesia denitrificans DSM 20603 8379539 YP_003160322.1 CDS Jden_0350 NC_013174.1 371486 372085 D PFAM: GrpE protein; KEGG: hypothetical protein; K03687 molecular chaperone GrpE; GrpE protein HSP-70 cofactor 371486..372085 Jonesia denitrificans DSM 20603 8379540 YP_003160323.1 CDS Jden_0351 NC_013174.1 372165 373169 D PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: vfi:VF_1108 chaperone protein DnaJ-like protein; chaperone DnaJ domain-containing protein 372165..373169 Jonesia denitrificans DSM 20603 8379541 YP_003160324.1 CDS Jden_0352 NC_013174.1 373176 373718 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: nis:NIS_0956 MerR family transcriptional regulator; transcriptional regulator, MerR family 373176..373718 Jonesia denitrificans DSM 20603 8379542 YP_003160325.1 CDS Jden_0353 NC_013174.1 373726 374475 R PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(373726..374475) Jonesia denitrificans DSM 20603 8379543 YP_003160326.1 CDS Jden_0354 NC_013174.1 374752 375060 D KEGG: gbm:Gbem_1185 hypothetical protein; hypothetical protein 374752..375060 Jonesia denitrificans DSM 20603 8379544 YP_003160327.1 CDS Jden_0355 NC_013174.1 375067 376017 R PFAM: transcriptional regulator domain protein; KEGG: scl:sce6445 hypothetical protein; putative winged helix family wo component transcriptional regulator complement(375067..376017) Jonesia denitrificans DSM 20603 8379545 YP_003160328.1 CDS Jden_0356 NC_013174.1 376340 376978 R TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: bha:BH3764 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(376340..376978) Jonesia denitrificans DSM 20603 8379546 YP_003160329.1 CDS Jden_0357 NC_013174.1 377094 377558 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: glo:Glov_3111 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 377094..377558 Jonesia denitrificans DSM 20603 8379547 YP_003160330.1 CDS Jden_0358 NC_013174.1 377855 378604 R PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein; RelA/SpoT domain-containing protein complement(377855..378604) Jonesia denitrificans DSM 20603 8381730 YP_003160331.1 CDS Jden_0359 NC_013174.1 378787 380415 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(378787..380415) Jonesia denitrificans DSM 20603 8379549 YP_003160332.1 CDS Jden_0360 NC_013174.1 380432 382066 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(380432..382066) Jonesia denitrificans DSM 20603 8379550 YP_003160333.1 CDS Jden_0361 NC_013174.1 382221 382493 D hypothetical protein 382221..382493 Jonesia denitrificans DSM 20603 8379551 YP_003160334.1 CDS Jden_0362 NC_013174.1 382479 383492 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: spe:Spro_3834 LacI family transcription regulator; transcriptional regulator, LacI family complement(382479..383492) Jonesia denitrificans DSM 20603 8379552 YP_003160335.1 CDS Jden_0363 NC_013174.1 383489 385723 R PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase; hypothetical protein complement(383489..385723) Jonesia denitrificans DSM 20603 8379553 YP_003160336.1 CDS Jden_0364 NC_013174.1 385822 387342 D PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase; alpha-N-arabinofuranosidase 385822..387342 Jonesia denitrificans DSM 20603 8379554 YP_003160337.1 CDS Jden_0365 NC_013174.1 387620 387934 D hypothetical protein 387620..387934 Jonesia denitrificans DSM 20603 8379555 YP_003160338.1 CDS Jden_0366 NC_013174.1 387942 388358 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase (ArsC); K03741 arsenate reductase; protein-tyrosine phosphatase complement(387942..388358) Jonesia denitrificans DSM 20603 8379556 YP_003160339.1 CDS Jden_0367 NC_013174.1 388416 389429 R PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; KEGG: arsenate reductase (ArsC); K03741 arsenate reductase; ArsR family transcriptional regulator complement(388416..389429) Jonesia denitrificans DSM 20603 8379557 YP_003160340.1 CDS Jden_0368 NC_013174.1 389426 390562 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bca:BCE_A0159 arsenite efflux transporter ArsB; arsenical-resistance protein complement(389426..390562) Jonesia denitrificans DSM 20603 8379558 YP_003160341.1 CDS Jden_0369 NC_013174.1 390695 391417 R KEGG: hypothetical protein; hypothetical protein complement(390695..391417) Jonesia denitrificans DSM 20603 8379559 YP_003160342.1 CDS Jden_0370 NC_013174.1 391548 393233 D PFAM: phosphoglucose isomerase (PGI); KEGG: sat:SYN_02950 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 391548..393233 Jonesia denitrificans DSM 20603 8379560 YP_003160343.1 CDS Jden_0371 NC_013174.1 393506 394417 D hypothetical protein 393506..394417 Jonesia denitrificans DSM 20603 8379561 YP_003160344.1 CDS Jden_0372 NC_013174.1 394424 395392 D hypothetical protein 394424..395392 Jonesia denitrificans DSM 20603 8379562 YP_003160345.1 CDS Jden_0373 NC_013174.1 395399 396763 D KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; hypothetical protein 395399..396763 Jonesia denitrificans DSM 20603 8379563 YP_003160346.1 CDS Jden_0374 NC_013174.1 396760 397458 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA4061 putative ABC transporter protein,ATPase component; ABC transporter 396760..397458 Jonesia denitrificans DSM 20603 8379564 YP_003160347.1 CDS Jden_0375 NC_013174.1 397575 398717 D PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related; hypothetical protein 397575..398717 Jonesia denitrificans DSM 20603 8379565 YP_003160348.1 CDS Jden_0376 NC_013174.1 398773 399849 R KEGG: mmr:Mmar10_2718 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family complement(398773..399849) Jonesia denitrificans DSM 20603 8379566 YP_003160349.1 CDS Jden_0377 NC_013174.1 399850 400044 D hypothetical protein 399850..400044 Jonesia denitrificans DSM 20603 8379567 YP_003160350.1 CDS Jden_0378 NC_013174.1 400080 402143 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 400080..402143 Jonesia denitrificans DSM 20603 8379568 YP_003160351.1 CDS Jden_0379 NC_013174.1 402140 403027 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K10189 lactose/L- arabinose transport system permease protein; binding-protein-dependent transport system inner membrane protein 402140..403027 Jonesia denitrificans DSM 20603 8379569 YP_003160352.1 CDS Jden_0380 NC_013174.1 403027 403932 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0127 ABC-type sugar transport system, permease component; binding-protein-dependent transport system inner membrane protein 403027..403932 Jonesia denitrificans DSM 20603 8379570 YP_003160353.1 CDS Jden_0381 NC_013174.1 403998 405335 D PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein 403998..405335 Jonesia denitrificans DSM 20603 8379571 YP_003160354.1 CDS Jden_0382 NC_013174.1 405483 406259 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter nucleotide binding/ATPase protein (peptide); K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein; ABC transporter complement(405483..406259) Jonesia denitrificans DSM 20603 8379572 YP_003160355.1 CDS Jden_0383 NC_013174.1 406428 406763 D PFAM: protein of unknown function DUF202; KEGG: pmy:Pmen_1718 hypothetical protein; hypothetical protein 406428..406763 Jonesia denitrificans DSM 20603 8379573 YP_003160356.1 CDS Jden_0384 NC_013174.1 406760 407131 D PFAM: protein of unknown function DUF202; KEGG: hypothetical protein; hypothetical protein 406760..407131 Jonesia denitrificans DSM 20603 8379574 YP_003160357.1 CDS Jden_0385 NC_013174.1 407135 409333 R KEGG: bha:BH2023 hypothetical protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: glycosyl hydrolase 53 domain protein; Ig domain protein; LPXTG-motif cell wall anchor domain-containing protein complement(407135..409333) Jonesia denitrificans DSM 20603 8379575 YP_003160358.1 CDS Jden_0387 NC_013174.1 409624 410586 R PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 hypothetical protein; hypothetical protein complement(409624..410586) Jonesia denitrificans DSM 20603 8381731 YP_003160359.1 CDS Jden_0388 NC_013174.1 410710 412308 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_II1465 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter complement(410710..412308) Jonesia denitrificans DSM 20603 8379577 YP_003160360.1 CDS Jden_0389 NC_013174.1 412371 413039 R PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator; TetR family transcriptional regulator complement(412371..413039) Jonesia denitrificans DSM 20603 8379578 YP_003160361.1 CDS Jden_0390 NC_013174.1 413117 413767 D PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_0103 transcriptional regulator, TetR family; TetR family transcriptional regulator 413117..413767 Jonesia denitrificans DSM 20603 8379579 YP_003160362.1 CDS Jden_0391 NC_013174.1 413764 415356 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5634 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter 413764..415356 Jonesia denitrificans DSM 20603 8379580 YP_003160363.1 CDS Jden_0392 NC_013174.1 415576 417030 D PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: GK24149 gene product from transcript GK24149- RA; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 415576..417030 Jonesia denitrificans DSM 20603 8379581 YP_003160364.1 CDS Jden_0393 NC_013174.1 417200 418000 D hypothetical protein 417200..418000 Jonesia denitrificans DSM 20603 8379582 YP_003160365.1 CDS Jden_0394 NC_013174.1 418106 419380 D hypothetical protein 418106..419380 Jonesia denitrificans DSM 20603 8379583 YP_003160366.1 CDS Jden_0395 NC_013174.1 419404 420324 D PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4430 luciferase-like; luciferase-like monooxygenase 419404..420324 Jonesia denitrificans DSM 20603 8379584 YP_003160367.1 CDS Jden_0396 NC_013174.1 420457 422373 D PFAM: glycoside hydrolase family 81; KEGG: scl:sce7103 hypothetical protein; glycoside hydrolase family protein 420457..422373 Jonesia denitrificans DSM 20603 8379585 YP_003160368.1 CDS Jden_0397 NC_013174.1 422421 422834 R KEGG: sde:Sde_1385 HesB/YadR/YfhF; hypothetical protein complement(422421..422834) Jonesia denitrificans DSM 20603 8379586 YP_003160369.1 CDS Jden_0398 NC_013174.1 423120 424529 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bte:BTH_I0252 xanthine/uracil permease family protein; uracil-xanthine permease 423120..424529 Jonesia denitrificans DSM 20603 8379587 YP_003160370.1 CDS Jden_0399 NC_013174.1 424646 425284 R hypothetical protein complement(424646..425284) Jonesia denitrificans DSM 20603 8379588 YP_003160371.1 CDS Jden_0400 NC_013174.1 425453 425746 R hypothetical protein complement(425453..425746) Jonesia denitrificans DSM 20603 8379589 YP_003160372.1 CDS Jden_0402 NC_013174.1 426191 426886 R PFAM: 2OG-Fe(II) oxygenase; KEGG: hypothetical protein; K03919 alkylated DNA repair protein; 2OG-Fe(II) oxygenase complement(426191..426886) Jonesia denitrificans DSM 20603 8381732 YP_003160373.1 CDS Jden_0403 NC_013174.1 426934 427470 R KEGG: afw:Anae109_0178 hypothetical protein; hypothetical protein complement(426934..427470) Jonesia denitrificans DSM 20603 8379591 YP_003160374.1 CDS Jden_0404 NC_013174.1 427641 428147 D PFAM: protein of unknown function DUF1706; KEGG: hhe:HH1054 hypothetical protein; hypothetical protein 427641..428147 Jonesia denitrificans DSM 20603 8379592 YP_003160375.1 CDS Jden_0405 NC_013174.1 428975 430000 D hypothetical protein 428975..430000 Jonesia denitrificans DSM 20603 8379593 YP_003160376.1 CDS Jden_0406 NC_013174.1 429984 431078 D hypothetical protein 429984..431078 Jonesia denitrificans DSM 20603 8379594 YP_003160377.1 CDS Jden_0407 NC_013174.1 431084 431791 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: esa:ESA_02459 macrolide transporter ATP- binding/permease protein; ABC transporter 431084..431791 Jonesia denitrificans DSM 20603 8379595 YP_003160378.1 CDS Jden_0410 NC_013174.1 433595 433753 R hypothetical protein complement(433595..433753) Jonesia denitrificans DSM 20603 8381736 YP_003160379.1 CDS Jden_0411 NC_013174.1 434018 434920 D PFAM: NLPA lipoprotein; KEGG: bcz:BCZK0286 lipoprotein ABC transporter substrate-binding protein; NLPA lipoprotein 434018..434920 Jonesia denitrificans DSM 20603 8379597 YP_003160380.1 CDS Jden_0412 NC_013174.1 435049 436152 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A0358 ABC transporter, ATP- binding protein; ABC transporter 435049..436152 Jonesia denitrificans DSM 20603 8379598 YP_003160381.1 CDS Jden_0413 NC_013174.1 436149 436841 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcy:Bcer98_0292 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 436149..436841 Jonesia denitrificans DSM 20603 8379599 YP_003160382.1 CDS Jden_0414 NC_013174.1 436908 439526 D KEGG: sus:Acid_3165 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 436908..439526 Jonesia denitrificans DSM 20603 8379600 YP_003160383.1 CDS Jden_0415 NC_013174.1 439532 440131 D KEGG: bha:BH0036 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domain protein; SMART: Toprim sub domain protein; recombination protein RecR 439532..440131 Jonesia denitrificans DSM 20603 8379601 YP_003160384.1 CDS Jden_0416 NC_013174.1 440146 440766 D KEGG: hch:HCH_01581 hypothetical protein; hypothetical protein 440146..440766 Jonesia denitrificans DSM 20603 8379602 YP_003160385.1 CDS Jden_0417 NC_013174.1 440920 442056 R KEGG: scl:sce7370 hypothetical protein; hypothetical protein complement(440920..442056) Jonesia denitrificans DSM 20603 8379603 YP_003160386.1 CDS Jden_0418 NC_013174.1 442053 442976 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein; ABC transporter complement(442053..442976) Jonesia denitrificans DSM 20603 8379604 YP_003160387.1 CDS Jden_0419 NC_013174.1 443175 444449 D KEGG: pca:Pcar_1006 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 443175..444449 Jonesia denitrificans DSM 20603 8379605 YP_003160388.1 CDS Jden_0420 NC_013174.1 444473 445522 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: cak:Caul_4072 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 444473..445522 Jonesia denitrificans DSM 20603 8379606 YP_003160389.1 CDS Jden_0421 NC_013174.1 445613 447484 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(445613..447484) Jonesia denitrificans DSM 20603 8379607 YP_003160390.1 CDS Jden_0422 NC_013174.1 447571 447843 R hypothetical protein complement(447571..447843) Jonesia denitrificans DSM 20603 8379608 YP_003160391.1 CDS Jden_0423 NC_013174.1 448261 449355 D KEGG: cak:Caul_0311 phospho-2-dehydro-3- deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 448261..449355 Jonesia denitrificans DSM 20603 8379609 YP_003160392.1 CDS Jden_0424 NC_013174.1 449517 450482 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: smt:Smal_2998 FAD-binding 9 siderophore- interacting domain protein; Siderophore-interacting protein 449517..450482 Jonesia denitrificans DSM 20603 8379610 YP_003160393.1 CDS Jden_0425 NC_013174.1 450479 451486 D PFAM: transport system permease protein; KEGG: oan:Oant_2826 transport system permease protein; transport system permease 450479..451486 Jonesia denitrificans DSM 20603 8379611 YP_003160394.1 CDS Jden_0426 NC_013174.1 451483 452550 D PFAM: transport system permease protein; KEGG: ppg:PputGB1_1806 transport system permease protein; transport system permease 451483..452550 Jonesia denitrificans DSM 20603 8379612 YP_003160395.1 CDS Jden_0427 NC_013174.1 452547 453404 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3525 ABC transporter related; ABC transporter 452547..453404 Jonesia denitrificans DSM 20603 8379613 YP_003160396.1 CDS Jden_0428 NC_013174.1 453432 454460 D PFAM: periplasmic binding protein; KEGG: pde:Pden_3522 periplasmic binding protein; periplasmic binding protein 453432..454460 Jonesia denitrificans DSM 20603 8379614 YP_003160397.1 CDS Jden_0429 NC_013174.1 454527 455597 D KEGG: hypothetical protein; hypothetical protein 454527..455597 Jonesia denitrificans DSM 20603 8379615 YP_003160398.1 CDS Jden_0430 NC_013174.1 455845 457107 R PFAM: amino acid permease-associated region; KEGG: lpn:lpg0049 amino acid transporter, permease; amino acid permease complement(455845..457107) Jonesia denitrificans DSM 20603 8381737 YP_003160399.1 CDS Jden_0431 NC_013174.1 457447 458394 R PFAM: metallophosphoesterase; KEGG: pca:Pcar_0763 phosphohydrolases; metallophosphoesterase complement(457447..458394) Jonesia denitrificans DSM 20603 8381738 YP_003160400.1 CDS Jden_0432 NC_013174.1 458398 460752 R PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dal:Dalk_0613 penicillin-binding protein, 1A family; glycosyl transferase family protein complement(458398..460752) Jonesia denitrificans DSM 20603 8379618 YP_003160401.1 CDS Jden_0433 NC_013174.1 460844 461008 D hypothetical protein 460844..461008 Jonesia denitrificans DSM 20603 8379619 YP_003160402.1 CDS Jden_0434 NC_013174.1 461008 461475 D PFAM: Endoribonuclease L-PSP; KEGG: rce:RC1_1921 endoribonuclease L-PSP, putative; endoribonuclease L-PSP 461008..461475 Jonesia denitrificans DSM 20603 8379620 YP_003160403.1 CDS Jden_0435 NC_013174.1 461540 462220 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sat:SYN_00574 cAMP-dependent transcriptional regulator; CarD family transcriptional regulator complement(461540..462220) Jonesia denitrificans DSM 20603 8379621 YP_003160404.1 CDS Jden_0436 NC_013174.1 462345 462737 R hypothetical protein complement(462345..462737) Jonesia denitrificans DSM 20603 8379622 YP_003160405.1 CDS Jden_0437 NC_013174.1 462874 463614 D KEGG: scl:sce3915 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 462874..463614 Jonesia denitrificans DSM 20603 8379623 YP_003160406.1 CDS Jden_0438 NC_013174.1 463576 464508 R PFAM: alpha/beta hydrolase fold protein; KEGG: scl:sce4150 putative hydrolase of unknown specificity; alpha/beta hydrolase fold protein complement(463576..464508) Jonesia denitrificans DSM 20603 8379624 YP_003160407.1 CDS Jden_0439 NC_013174.1 464523 465269 R PFAM: transcriptional regulator domain protein; KEGG: bcz:BCZK1193 response regulator; putative winged helix family wo component transcriptional regulator complement(464523..465269) Jonesia denitrificans DSM 20603 8379625 YP_003160408.1 CDS Jden_0440 NC_013174.1 465272 466144 D KEGG: gdi:GDI3313 hypothetical protein; hypothetical protein 465272..466144 Jonesia denitrificans DSM 20603 8379626 YP_003160409.1 CDS Jden_0441 NC_013174.1 466187 466546 R KEGG: oca:OCAR_7467 hypothetical protein; hypothetical protein complement(466187..466546) Jonesia denitrificans DSM 20603 8379627 YP_003160410.1 CDS Jden_0442 NC_013174.1 466579 466698 D hypothetical protein 466579..466698 Jonesia denitrificans DSM 20603 8379628 YP_003160411.1 CDS Jden_0443 NC_013174.1 466701 467285 D PFAM: Domain of unknown function DUF1794; KEGG: hypothetical protein; hypothetical protein 466701..467285 Jonesia denitrificans DSM 20603 8379629 YP_003160412.1 CDS Jden_0444 NC_013174.1 467278 468447 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aba:Acid345_2628 glycine cleavage T protein, aminomethyl transferase; folate-binding protein YgfZ 467278..468447 Jonesia denitrificans DSM 20603 8379630 YP_003160413.1 CDS Jden_0445 NC_013174.1 468494 469603 D KEGG: atc:AGR_C_2137 hypothetical protein; hypothetical protein 468494..469603 Jonesia denitrificans DSM 20603 8379631 YP_003160414.1 CDS Jden_0446 NC_013174.1 469629 469958 D hypothetical protein 469629..469958 Jonesia denitrificans DSM 20603 8379632 YP_003160415.1 CDS Jden_0447 NC_013174.1 469960 470385 D TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: bha:BH1243 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase 469960..470385 Jonesia denitrificans DSM 20603 8379633 YP_003160416.1 CDS Jden_0448 NC_013174.1 470437 471582 D PFAM: glycosyl transferase group 1; KEGG: ank:AnaeK_3592 glycosyl transferase group 1; group 1 glycosyl transferase 470437..471582 Jonesia denitrificans DSM 20603 8379634 YP_003160417.1 CDS Jden_0449 NC_013174.1 471708 474236 D PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bsu:BSU00860 class III stress response- related ATPase; ATPase AAA-2 domain-containing protein 471708..474236 Jonesia denitrificans DSM 20603 8379635 YP_003160418.1 CDS Jden_0450 NC_013174.1 474332 474928 R KEGG: mmr:Mmar10_0044 uridine kinase; uridine kinase-like protein complement(474332..474928) Jonesia denitrificans DSM 20603 8379636 YP_003160419.1 CDS Jden_0451 NC_013174.1 474925 475272 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pla:Plav_2471 regulatory protein ArsR; ArsR family transcriptional regulator complement(474925..475272) Jonesia denitrificans DSM 20603 8379637 YP_003160420.1 CDS Jden_0452 NC_013174.1 475280 476209 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xca:xccb100_3038 cobalt-zinc-cadmium efflux permease; cation diffusion facilitator family transporter complement(475280..476209) Jonesia denitrificans DSM 20603 8379638 YP_003160421.1 CDS Jden_0453 NC_013174.1 476324 477064 D PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: scl:sce0751 GntR family transcriptional regulator; GntR family transcriptional regulator 476324..477064 Jonesia denitrificans DSM 20603 8379639 YP_003160422.1 CDS Jden_0454 NC_013174.1 477061 477882 R KEGG: pzu:PHZ_c1695 hypothetical protein; hypothetical protein complement(477061..477882) Jonesia denitrificans DSM 20603 8379640 YP_003160423.1 CDS Jden_0455 NC_013174.1 478020 478397 D PFAM: Forkhead-associated protein; FHA domain-containing protein 478020..478397 Jonesia denitrificans DSM 20603 8379641 YP_003160424.1 CDS Jden_0456 NC_013174.1 478423 479286 D SMART: protein phosphatase 2C domain protein; KEGG: cja:CJA_1646 protein phosphatase; protein serine/threonine phosphatase 478423..479286 Jonesia denitrificans DSM 20603 8379642 YP_003160425.1 CDS Jden_0457 NC_013174.1 479289 480893 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ank:AnaeK_0242 Fe-S oxidoreductase; FHA domain-containing protein 479289..480893 Jonesia denitrificans DSM 20603 8379643 YP_003160426.1 CDS Jden_0458 NC_013174.1 480890 482707 D PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_0222 serine/threonine protein kinase; serine/threonine protein kinase 480890..482707 Jonesia denitrificans DSM 20603 8379644 YP_003160427.1 CDS Jden_0459 NC_013174.1 482704 488835 D PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR; fibronectin type III domain-containing protein 482704..488835 Jonesia denitrificans DSM 20603 8379645 YP_003160428.1 CDS Jden_0460 NC_013174.1 488953 489984 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bcr:BCAH187_A2274 methanol dehydrogenase regulatory protein; magnesium chelatase; ATPase 488953..489984 Jonesia denitrificans DSM 20603 8379646 YP_003160429.1 CDS Jden_0461 NC_013174.1 489997 491184 D PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein; hypothetical protein 489997..491184 Jonesia denitrificans DSM 20603 8379647 YP_003160430.1 CDS Jden_0463 NC_013174.1 493504 494550 R PFAM: aldo/keto reductase; KEGG: xac:XAC3199 oxidoreductase; aldo/keto reductase complement(493504..494550) Jonesia denitrificans DSM 20603 8381739 YP_003160431.1 CDS Jden_0464 NC_013174.1 494708 496408 R KEGG: Muc3; mucin 3, intestinal; hypothetical protein complement(494708..496408) Jonesia denitrificans DSM 20603 8379649 YP_003160432.1 CDS Jden_0465 NC_013174.1 496401 497633 R PFAM: ROK family protein; KEGG: acr:Acry_0116 ROK family protein; ROK family protein complement(496401..497633) Jonesia denitrificans DSM 20603 8379650 YP_003160433.1 CDS Jden_0466 NC_013174.1 497711 498889 D KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 497711..498889 Jonesia denitrificans DSM 20603 8379651 YP_003160434.1 CDS Jden_0467 NC_013174.1 498894 500336 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase; xylulokinase 498894..500336 Jonesia denitrificans DSM 20603 8379652 YP_003160435.1 CDS Jden_0468 NC_013174.1 500595 501329 D PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: maq:Maqu_0488 response regulator receiver protein; LytTR family two component transcriptional regulator 500595..501329 Jonesia denitrificans DSM 20603 8379653 YP_003160436.1 CDS Jden_0469 NC_013174.1 501326 502660 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_1389 sensor protein PhoQ; ATP-binding protein 501326..502660 Jonesia denitrificans DSM 20603 8379654 YP_003160437.1 CDS Jden_0470 NC_013174.1 502741 503178 R KEGG: mlo:msl1572 hypothetical protein; hypothetical protein complement(502741..503178) Jonesia denitrificans DSM 20603 8379655 YP_003160438.1 CDS Jden_0471 NC_013174.1 503302 505695 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase; glycoside hydrolase family 3 complement(503302..505695) Jonesia denitrificans DSM 20603 8379656 YP_003160439.1 CDS Jden_0472 NC_013174.1 506170 509127 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_2107 glycoside hydrolase family 3 protein; Beta-glucosidase 506170..509127 Jonesia denitrificans DSM 20603 8379657 YP_003160440.1 CDS Jden_0473 NC_013174.1 509253 509813 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tbd:Tbd_2407 RNA methyltransferase CspR; tRNA/rRNA methyltransferase SpoU complement(509253..509813) Jonesia denitrificans DSM 20603 8379658 YP_003160441.1 CDS Jden_0474 NC_013174.1 509813 510457 R KEGG: xcv:XCV0076 hypothetical protein; hypothetical protein complement(509813..510457) Jonesia denitrificans DSM 20603 8379659 YP_003160442.1 CDS Jden_0475 NC_013174.1 510683 511594 D hypothetical protein 510683..511594 Jonesia denitrificans DSM 20603 8379660 YP_003160443.1 CDS Jden_0476 NC_013174.1 511780 512268 D hypothetical protein 511780..512268 Jonesia denitrificans DSM 20603 8379661 YP_003160444.1 CDS Jden_0477 NC_013174.1 512319 513278 D hypothetical protein 512319..513278 Jonesia denitrificans DSM 20603 8379662 YP_003160445.1 CDS Jden_0478 NC_013174.1 513275 514690 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; peptidoglycan-binding domain 1 protein 513275..514690 Jonesia denitrificans DSM 20603 8379663 YP_003160446.1 CDS Jden_0479 NC_013174.1 514687 515370 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; ABC transporter 514687..515370 Jonesia denitrificans DSM 20603 8379664 YP_003160447.1 CDS Jden_0480 NC_013174.1 515374 516561 D PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related; hypothetical protein 515374..516561 Jonesia denitrificans DSM 20603 8379665 YP_003160448.1 CDS Jden_0481 NC_013174.1 516668 519016 R TIGRFAM: YhgE/Pip N-terminal domain protein; KEGG: bca:BCE_1178 hypothetical protein; YhgE/Pip N-terminal domain-containing protein complement(516668..519016) Jonesia denitrificans DSM 20603 8379666 YP_003160449.1 CDS Jden_0482 NC_013174.1 519013 521742 R PFAM: MMPL domain protein; KEGG: bsu:BSU05430 hypothetical protein; MMPL domain-containing protein complement(519013..521742) Jonesia denitrificans DSM 20603 8379667 YP_003160450.1 CDS Jden_0483 NC_013174.1 521886 522566 D PFAM: regulatory protein TetR; KEGG: spe:Spro_2373 TetR family transcriptional regulator; TetR family transcriptional regulator 521886..522566 Jonesia denitrificans DSM 20603 8379668 YP_003160451.1 CDS Jden_0484 NC_013174.1 522516 524318 R PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: gsu:GSU0541 DNA polymerase I; DNA-directed DNA polymerase complement(522516..524318) Jonesia denitrificans DSM 20603 8379669 YP_003160452.1 CDS Jden_0485 NC_013174.1 524430 525947 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: gdi:GDI0266 putative glycerol kinase; glycerol kinase complement(524430..525947) Jonesia denitrificans DSM 20603 8379670 YP_003160453.1 CDS Jden_0486 NC_013174.1 525984 526724 R PFAM: major intrinsic protein; KEGG: azc:AZC_2711 glycerol uptake facilitator protein; major intrinsic protein complement(525984..526724) Jonesia denitrificans DSM 20603 8379671 YP_003160454.1 CDS Jden_0487 NC_013174.1 526833 528581 R PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_2018 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(526833..528581) Jonesia denitrificans DSM 20603 8379672 YP_003160455.1 CDS Jden_0488 NC_013174.1 528677 529630 D PFAM: putative sugar-binding domain protein; KEGG: bcy:Bcer98_1468 DeoR family transcriptional regulator; Cro/CI family transcriptional regulator 528677..529630 Jonesia denitrificans DSM 20603 8379673 YP_003160456.1 CDS Jden_0489 NC_013174.1 529669 530193 D PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase; N-acetyltransferase GCN5 529669..530193 Jonesia denitrificans DSM 20603 8379674 YP_003160457.1 CDS Jden_0490 NC_013174.1 530168 531103 R PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: swi:Swit_4690 A/G-specific DNA-adenine glycosylase; HhH-GPD family protein complement(530168..531103) Jonesia denitrificans DSM 20603 8379675 YP_003160458.1 CDS Jden_0491 NC_013174.1 531343 531915 D KEGG: GK17577 gene product from transcript GK17577- RA; hypothetical protein 531343..531915 Jonesia denitrificans DSM 20603 8379676 YP_003160459.1 CDS Jden_0492 NC_013174.1 531962 533050 R PFAM: protein of unknown function DUF147; helix- hairpin-helix motif; KEGG: bsu:BSU00880 DNA integrity scanning protein DisA; hypothetical protein complement(531962..533050) Jonesia denitrificans DSM 20603 8379677 YP_003160460.1 CDS Jden_0493 NC_013174.1 533154 534515 R KEGG: bpt:Bpet3157 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA complement(533154..534515) Jonesia denitrificans DSM 20603 8379678 YP_003160461.1 CDS Jden_0494 NC_013174.1 534610 535320 D KEGG: pde:Pden_4052 mucin-associated surface protein; hypothetical protein 534610..535320 Jonesia denitrificans DSM 20603 8379679 YP_003160462.1 CDS Jden_0495 NC_013174.1 535317 536324 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family 535317..536324 Jonesia denitrificans DSM 20603 8379680 YP_003160463.1 CDS Jden_0496 NC_013174.1 536485 538104 D PFAM: carbohydrate kinase FGGY; KEGG: msu:MS1411 XylB protein; carbohydrate kinase FGGY 536485..538104 Jonesia denitrificans DSM 20603 8379681 YP_003160464.1 CDS Jden_0497 NC_013174.1 538132 538860 D PFAM: class II aldolase/adducin family protein; KEGG: aha:AHA_1901 L-ribulose-5-phosphate 4- epimerase; class II aldolase/adducin family protein 538132..538860 Jonesia denitrificans DSM 20603 8379682 YP_003160465.1 CDS Jden_0498 NC_013174.1 538891 540399 D PFAM: L-arabinose isomerase; KEGG: scl:sce3310 L-arabinose isomerase; L-arabinose isomerase 538891..540399 Jonesia denitrificans DSM 20603 8379683 YP_003160466.1 CDS Jden_0499 NC_013174.1 540727 541866 D KEGG: bha:BH3442 multiple sugar transport system (multiple sugar-binding protein); multiple sugar transport system (multiple sugar- binding protein) 540727..541866 Jonesia denitrificans DSM 20603 8379684 YP_003160467.1 CDS Jden_0500 NC_013174.1 542012 542152 D hypothetical protein 542012..542152 Jonesia denitrificans DSM 20603 8379685 YP_003160468.1 CDS Jden_0501 NC_013174.1 542143 543423 D PFAM: glycoside hydrolase family 43; KEGG: bha:BH1867 hypothetical protein; alpha-N-arabinofuranosidase 542143..543423 Jonesia denitrificans DSM 20603 8379686 YP_003160469.1 CDS Jden_0502 NC_013174.1 543993 545138 D KEGG: bja:blr3208 ABC transporter sugar-binding protein; sugar ABC transporter substrate-binding protein 543993..545138 Jonesia denitrificans DSM 20603 8379687 YP_003160470.1 CDS Jden_0503 NC_013174.1 545249 546775 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein; ABC transporter 545249..546775 Jonesia denitrificans DSM 20603 8379688 YP_003160471.1 CDS Jden_0504 NC_013174.1 546781 547959 D PFAM: inner-membrane translocator; KEGG: bha:BH3440 L-arabinose ABC transporter (permease); monosaccharide-transporting ATPase 546781..547959 Jonesia denitrificans DSM 20603 8379689 YP_003160472.1 CDS Jden_0505 NC_013174.1 548079 548843 R PFAM: TrkA-N domain protein; KEGG: mno:Mnod_7573 TrkA-N domain protein; TrkA-N domain-containing protein complement(548079..548843) Jonesia denitrificans DSM 20603 8379690 YP_003160473.1 CDS Jden_0506 NC_013174.1 548836 550212 R PFAM: cation transporter; KEGG: mno:Mnod_7572 cation transporter; H(+)-transporting two-sector ATPase complement(548836..550212) Jonesia denitrificans DSM 20603 8379691 YP_003160474.1 CDS Jden_0507 NC_013174.1 550334 551521 D PFAM: histone deacetylase superfamily; KEGG: bha:BH3237 acetoin dehydrogenase; histone deacetylase superfamily protein 550334..551521 Jonesia denitrificans DSM 20603 8379692 YP_003160475.1 CDS Jden_0508 NC_013174.1 551959 553002 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pfl:PFL_2104 ribose operon repressor; transcriptional regulator, LacI family 551959..553002 Jonesia denitrificans DSM 20603 8379693 YP_003160476.1 CDS Jden_0509 NC_013174.1 552967 553677 R PFAM: protein of unknown function DUF624; KEGG: bha:BH3684 hypothetical protein; hypothetical protein complement(552967..553677) Jonesia denitrificans DSM 20603 8379694 YP_003160477.1 CDS Jden_0510 NC_013174.1 553756 555126 R PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; glycoside hydrolase family protein complement(553756..555126) Jonesia denitrificans DSM 20603 8379695 YP_003160478.1 CDS Jden_0511 NC_013174.1 555135 556091 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1866 sugar transport system (permease) (binding protein dependent transporter); binding-protein-dependent transport system inner membrane protein complement(555135..556091) Jonesia denitrificans DSM 20603 8379696 YP_003160479.1 CDS Jden_0512 NC_013174.1 556100 557056 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce3058 sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(556100..557056) Jonesia denitrificans DSM 20603 8379697 YP_003160480.1 CDS Jden_0513 NC_013174.1 557113 558456 R PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein; extracellular solute-binding protein complement(557113..558456) Jonesia denitrificans DSM 20603 8379698 YP_003160481.1 CDS Jden_0514 NC_013174.1 558803 560110 D KEGG: sus:Acid_1472 glycoside hydrolase, clan GH-D; glycoside hydrolase, clan GH-D 558803..560110 Jonesia denitrificans DSM 20603 8379699 YP_003160482.1 CDS Jden_0515 NC_013174.1 560138 561661 D PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: vei:Veis_3457 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase 560138..561661 Jonesia denitrificans DSM 20603 8379700 YP_003160483.1 CDS Jden_0516 NC_013174.1 561694 562794 D PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1961 arabinan endo-1,5-alpha-L- arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 561694..562794 Jonesia denitrificans DSM 20603 8379701 YP_003160484.1 CDS Jden_0517 NC_013174.1 562856 563119 D PFAM: glutaredoxin 2; KEGG: bxe:Bxe_A1082 hypothetical protein; glutaredoxin 562856..563119 Jonesia denitrificans DSM 20603 8379702 YP_003160485.1 CDS Jden_0518 NC_013174.1 563200 563745 R PFAM: YceI family protein; KEGG: mxa:MXAN_4355 YceI-like family protein; hypothetical protein complement(563200..563745) Jonesia denitrificans DSM 20603 8379703 YP_003160486.1 CDS Jden_0519 NC_013174.1 564006 564491 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: efe:EFER_2801 putative MarR-family regulatory protein; transcriptional regulator, MarR family 564006..564491 Jonesia denitrificans DSM 20603 8379704 YP_003160487.1 CDS Jden_0520 NC_013174.1 564529 565173 D PFAM: Phosphoglycerate mutase; KEGG: met:M446_2115 phosphoglycerate mutase; phosphoglycerate mutase 564529..565173 Jonesia denitrificans DSM 20603 8379705 YP_003160488.1 CDS Jden_0521 NC_013174.1 565216 565836 D PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: eba:ebA1468 thioredoxin; redoxin domain-containing protein 565216..565836 Jonesia denitrificans DSM 20603 8379706 YP_003160489.1 CDS Jden_0522 NC_013174.1 565836 566612 D PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: oca:OCAR_5474 C-type cytochrome biogenesis protein; cytochrome c biogenesis protein transmembrane region 565836..566612 Jonesia denitrificans DSM 20603 8379707 YP_003160490.1 CDS Jden_0523 NC_013174.1 566613 568211 D PFAM: ResB family protein; KEGG: ngo:NGO0102 putative cytochrome biogenesis protein; ResB family protein 566613..568211 Jonesia denitrificans DSM 20603 8379708 YP_003160491.1 CDS Jden_0524 NC_013174.1 568244 569149 D TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_2228 ABC-type transport system, permease component; cytochrome c-type biogenesis protein CcsB 568244..569149 Jonesia denitrificans DSM 20603 8379709 YP_003160492.1 CDS Jden_0525 NC_013174.1 569188 569655 R KEGG: GH12479 gene product from transcript GH12479- RA; hypothetical protein complement(569188..569655) Jonesia denitrificans DSM 20603 8379710 YP_003160493.1 CDS Jden_0526 NC_013174.1 569687 569959 D hypothetical protein 569687..569959 Jonesia denitrificans DSM 20603 8379711 YP_003160494.1 CDS Jden_0527 NC_013174.1 569988 570866 R TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: shw:Sputw3181_2299 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(569988..570866) Jonesia denitrificans DSM 20603 8379712 YP_003160495.1 CDS Jden_0528 NC_013174.1 570879 571979 R PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce3015 O-succinylbenzoate-CoA ligase; AMP-dependent synthetase and ligase complement(570879..571979) Jonesia denitrificans DSM 20603 8379713 YP_003160496.1 CDS Jden_0529 NC_013174.1 572054 573184 D KEGG: bsu:BSU06570 hypothetical protein; hypothetical protein 572054..573184 Jonesia denitrificans DSM 20603 8379714 YP_003160497.1 CDS Jden_0530 NC_013174.1 573247 573528 D hypothetical protein 573247..573528 Jonesia denitrificans DSM 20603 8379715 YP_003160498.1 CDS Jden_0531 NC_013174.1 573542 574495 R TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dal:Dalk_1406 naphthoate synthase; naphthoate synthase complement(573542..574495) Jonesia denitrificans DSM 20603 8379716 YP_003160499.1 CDS Jden_0532 NC_013174.1 574627 575250 D PFAM: regulatory protein TetR; KEGG: esa:ESA_02492 hypothetical protein; TetR family transcriptional regulator 574627..575250 Jonesia denitrificans DSM 20603 8379717 YP_003160500.1 CDS Jden_0533 NC_013174.1 575260 576216 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mxa:MXAN_3531 putative O-succinylbenzoic acid synthase; mandelate racemase/muconate lactonizing protein 575260..576216 Jonesia denitrificans DSM 20603 8379718 YP_003160501.1 CDS Jden_0534 NC_013174.1 576232 578061 D TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; KEGG: bsu:BSU30820 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate synthase/2- oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase 576232..578061 Jonesia denitrificans DSM 20603 8379719 YP_003160502.1 CDS Jden_0535 NC_013174.1 578180 579589 D KEGG: rlt:Rleg2_2539 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; Peptidase S7 flavivirus helicase (NS3); PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; 2-alkenal reductase 578180..579589 Jonesia denitrificans DSM 20603 8379720 YP_003160503.1 CDS Jden_0536 NC_013174.1 579622 581031 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: scl:sce5042 hypothetical protein; isochorismate synthase complement(579622..581031) Jonesia denitrificans DSM 20603 8379721 YP_003160504.1 CDS Jden_0537 NC_013174.1 581032 581739 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: csa:Csal_0597 2-octaprenyl-6-methoxy-1,4- benzoquinone methylase / demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 581032..581739 Jonesia denitrificans DSM 20603 8379722 YP_003160505.1 CDS Jden_0538 NC_013174.1 581860 583200 R PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: mxa:MXAN_4837 endoglucanase; glycoside hydrolase family protein complement(581860..583200) Jonesia denitrificans DSM 20603 8379723 YP_003160506.1 CDS Jden_0539 NC_013174.1 583928 584290 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: glo:Glov_3138 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 583928..584290 Jonesia denitrificans DSM 20603 8379724 YP_003160507.1 CDS Jden_0540 NC_013174.1 584312 584863 D KEGG: aba:Acid345_2252 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 584312..584863 Jonesia denitrificans DSM 20603 8379725 YP_003160508.1 CDS Jden_0541 NC_013174.1 584860 585579 D TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rpe:RPE_2521 NADH dehydrogenase subunit C; NADH (or F420H2) dehydrogenase subunit C 584860..585579 Jonesia denitrificans DSM 20603 8379726 YP_003160509.1 CDS Jden_0542 NC_013174.1 585576 586916 D KEGG: sus:Acid_0111 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D 585576..586916 Jonesia denitrificans DSM 20603 8379727 YP_003160510.1 CDS Jden_0543 NC_013174.1 586913 587722 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aba:Acid345_1312 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 586913..587722 Jonesia denitrificans DSM 20603 8379728 YP_003160511.1 CDS Jden_0544 NC_013174.1 587719 589065 D KEGG: ret:RHE_CH03741 NADH-ubiquinone oxidoreductase chain F protein; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 587719..589065 Jonesia denitrificans DSM 20603 8379729 YP_003160512.1 CDS Jden_0545 NC_013174.1 589062 591650 D TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; molydopterin dinucleotide-binding region; KEGG: ret:RHE_CH03742 NADH-ubiquinone oxidoreductase chain G protein; NADH-quinone oxidoreductase subunit G 589062..591650 Jonesia denitrificans DSM 20603 8379730 YP_003160513.1 CDS Jden_0546 NC_013174.1 591650 592987 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: aba:Acid345_1308 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 591650..592987 Jonesia denitrificans DSM 20603 8379731 YP_003160514.1 CDS Jden_0547 NC_013174.1 593037 593717 D TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_3879 NADH-quinone oxidoreductase, chain I; NADH-quinone oxidoreductase subunit I 593037..593717 Jonesia denitrificans DSM 20603 8379732 YP_003160515.1 CDS Jden_0548 NC_013174.1 593714 594562 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: aeh:Mlg_1961 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 593714..594562 Jonesia denitrificans DSM 20603 8379733 YP_003160516.1 CDS Jden_0549 NC_013174.1 594562 594861 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gur:Gura_4234 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 594562..594861 Jonesia denitrificans DSM 20603 8379734 YP_003160517.1 CDS Jden_0550 NC_013174.1 594878 596788 D KEGG: bba:Bd3888 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 594878..596788 Jonesia denitrificans DSM 20603 8379735 YP_003160518.1 CDS Jden_0551 NC_013174.1 596801 598324 D KEGG: ank:AnaeK_0442 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 596801..598324 Jonesia denitrificans DSM 20603 8379736 YP_003160519.1 CDS Jden_0552 NC_013174.1 598324 600111 D KEGG: gbm:Gbem_3913 proton-translocating NADH- quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N 598324..600111 Jonesia denitrificans DSM 20603 8379737 YP_003160520.1 CDS Jden_0553 NC_013174.1 600247 601257 D PFAM: Polyprenyl synthetase; KEGG: hne:HNE_0678 polyprenyl synthetase; polyprenyl synthetase 600247..601257 Jonesia denitrificans DSM 20603 8379738 YP_003160521.1 CDS Jden_0554 NC_013174.1 601434 602567 D PFAM: Forkhead-associated protein; forkhead-associated protein 601434..602567 Jonesia denitrificans DSM 20603 8379739 YP_003160522.1 CDS Jden_0555 NC_013174.1 602742 603446 D hypothetical protein 602742..603446 Jonesia denitrificans DSM 20603 8379740 YP_003160523.1 CDS Jden_0556 NC_013174.1 603465 603962 D KEGG: bph:Bphy_0958 alcohol dehydrogenase; hypothetical protein 603465..603962 Jonesia denitrificans DSM 20603 8379741 YP_003160524.1 CDS Jden_0557 NC_013174.1 604119 605510 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin--NADP(+) reductase 604119..605510 Jonesia denitrificans DSM 20603 8379742 YP_003160525.1 CDS Jden_0558 NC_013174.1 605654 606511 D PFAM: peptidase M48 Ste24p; KEGG: bxe:Bxe_A4413 heat shock protein HtpX; peptidase M48 Ste24p 605654..606511 Jonesia denitrificans DSM 20603 8379743 YP_003160526.1 CDS Jden_0559 NC_013174.1 606555 607799 D hypothetical protein 606555..607799 Jonesia denitrificans DSM 20603 8379744 YP_003160527.1 CDS Jden_0560 NC_013174.1 607806 608603 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: bsu:BSU11140 hypothetical protein; HAD-superfamily hydrolase complement(607806..608603) Jonesia denitrificans DSM 20603 8379745 YP_003160528.1 CDS Jden_0561 NC_013174.1 608607 609104 R PFAM: protein of unknown function DUF520; KEGG: bha:BH2387 nucleotide-binding protein; hypothetical protein complement(608607..609104) Jonesia denitrificans DSM 20603 8379746 YP_003160529.1 CDS Jden_0562 NC_013174.1 610171 610653 D KEGG: swi:Swit_1609 hypothetical protein; hypothetical protein 610171..610653 Jonesia denitrificans DSM 20603 8381742 YP_003160530.1 CDS Jden_0563 NC_013174.1 610650 611084 D PFAM: MaoC domain protein dehydratase; KEGG: vei:Veis_2940 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 610650..611084 Jonesia denitrificans DSM 20603 8379748 YP_003160531.1 CDS Jden_0564 NC_013174.1 611139 612383 R SMART: regulatory protein LacI; KEGG: gox:GOX0577 transcriptional regulator; transcriptional regulator, LacI family complement(611139..612383) Jonesia denitrificans DSM 20603 8379749 YP_003160532.1 CDS Jden_0565 NC_013174.1 612527 613858 D PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_00876 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 612527..613858 Jonesia denitrificans DSM 20603 8379750 YP_003160533.1 CDS Jden_0566 NC_013174.1 613855 615132 D PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0751 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 613855..615132 Jonesia denitrificans DSM 20603 8379751 YP_003160534.1 CDS Jden_0567 NC_013174.1 615142 616404 D PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; KEGG: scl:sce7823 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylmuramate dehydrogenase 615142..616404 Jonesia denitrificans DSM 20603 8379752 YP_003160535.1 CDS Jden_0568 NC_013174.1 616466 617872 D PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2937 major facilitator superfamily transporter; major facilitator superfamily protein 616466..617872 Jonesia denitrificans DSM 20603 8379753 YP_003160536.1 CDS Jden_0569 NC_013174.1 617869 618933 D KEGG: aci:ACIAD2016 hypothetical protein; hypothetical protein 617869..618933 Jonesia denitrificans DSM 20603 8379754 YP_003160537.1 CDS Jden_0570 NC_013174.1 618920 619279 D PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bmj:BMULJ_04556 DNA-binding protein; GntR family transcriptional regulator 618920..619279 Jonesia denitrificans DSM 20603 8379755 YP_003160538.1 CDS Jden_0571 NC_013174.1 619360 620223 D PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein; metal-dependent protein hydrolase 619360..620223 Jonesia denitrificans DSM 20603 8379756 YP_003160539.1 CDS Jden_0572 NC_013174.1 620288 621355 R KEGG: rsq:Rsph17025_0278 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(620288..621355) Jonesia denitrificans DSM 20603 8379757 YP_003160540.1 CDS Jden_0573 NC_013174.1 621438 621941 D KEGG: tmz:Tmz1t_0141 protoporphyrinogen oxidase; protoporphyrinogen oxidase 621438..621941 Jonesia denitrificans DSM 20603 8379758 YP_003160541.1 CDS Jden_0574 NC_013174.1 622398 622688 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: rru:Rru_A2701 preprotein translocase subunit SecE; Preprotein translocase subunit SecE 622398..622688 Jonesia denitrificans DSM 20603 8381744 YP_003160542.1 CDS Jden_0575 NC_013174.1 622849 623670 D KEGG: bha:BH0118 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein; NusG antitermination factor 622849..623670 Jonesia denitrificans DSM 20603 8379760 YP_003160543.1 CDS Jden_0576 NC_013174.1 623802 624233 D KEGG: tcx:Tcr_0284 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 623802..624233 Jonesia denitrificans DSM 20603 8379761 YP_003160544.1 CDS Jden_0577 NC_013174.1 624311 625021 D TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: bcy:Bcer98_0092 50S ribosomal protein L1; 50S ribosomal protein L1 624311..625021 Jonesia denitrificans DSM 20603 8379762 YP_003160545.1 CDS Jden_0578 NC_013174.1 625284 625922 D PFAM: ribosomal protein L10; KEGG: mgm:Mmc1_0838 LSU ribosomal protein L10P; 50S ribosomal protein L10 625284..625922 Jonesia denitrificans DSM 20603 8379763 YP_003160546.1 CDS Jden_0579 NC_013174.1 625995 626381 D TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: mgm:Mmc1_0839 LSU ribosomal protein L12P; 50S ribosomal protein L7/L12 625995..626381 Jonesia denitrificans DSM 20603 8379764 YP_003160547.1 CDS Jden_0580 NC_013174.1 626830 630342 D TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: bha:BH0126 DNA-directed RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta 626830..630342 Jonesia denitrificans DSM 20603 8379765 YP_003160548.1 CDS Jden_0581 NC_013174.1 630466 634338 D KEGG: bha:BH0127 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 630466..634338 Jonesia denitrificans DSM 20603 8379766 YP_003160549.1 CDS Jden_0582 NC_013174.1 634855 635229 D TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: pca:Pcar_0696 30S ribosomal protein S12; 30S ribosomal protein S12 634855..635229 Jonesia denitrificans DSM 20603 8379767 YP_003160550.1 CDS Jden_0583 NC_013174.1 635231 635701 D TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bha:BH0130 30S ribosomal protein S7; 30S ribosomal protein S7 635231..635701 Jonesia denitrificans DSM 20603 8379768 YP_003160551.1 CDS Jden_0584 NC_013174.1 635792 637891 D TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: nis:NIS_0272 elongation factor G; translation elongation factor G 635792..637891 Jonesia denitrificans DSM 20603 8379769 YP_003160552.1 CDS Jden_0585 NC_013174.1 638022 639212 D KEGG: fph:Fphi_1039 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; translation elongation factor Tu 638022..639212 Jonesia denitrificans DSM 20603 8379770 YP_003160553.1 CDS Jden_0586 NC_013174.1 639704 640012 D TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bcu:BCAH820_0121 ribosomal protein S10; 30S ribosomal protein S10 639704..640012 Jonesia denitrificans DSM 20603 8379771 YP_003160554.1 CDS Jden_0587 NC_013174.1 640032 640691 D PFAM: ribosomal protein L3; KEGG: sat:SYN_00985 50S ribosomal protein L3P; 50S ribosomal protein L3 640032..640691 Jonesia denitrificans DSM 20603 8379772 YP_003160555.1 CDS Jden_0588 NC_013174.1 640696 641382 D PFAM: ribosomal protein L4/L1e; KEGG: bha:BH0135 50S ribosomal protein L4; 50S ribosomal protein L4 640696..641382 Jonesia denitrificans DSM 20603 8379773 YP_003160556.1 CDS Jden_0589 NC_013174.1 641379 641681 D PFAM: Ribosomal protein L25/L23; KEGG: bja:bll5398 50S ribosomal protein L23; 50S ribosomal protein L25 641379..641681 Jonesia denitrificans DSM 20603 8379774 YP_003160557.1 CDS Jden_0590 NC_013174.1 641715 642551 D TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: dvu:DVU1306 50S ribosomal protein L2; 50S ribosomal protein L2 641715..642551 Jonesia denitrificans DSM 20603 8379775 YP_003160558.1 CDS Jden_0591 NC_013174.1 642567 642848 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bsu:BSU01200 30S ribosomal protein S19; 30S ribosomal protein S19 642567..642848 Jonesia denitrificans DSM 20603 8379776 YP_003160559.1 CDS Jden_0592 NC_013174.1 642897 643265 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bsu:BSU01210 50S ribosomal protein L22; 50S ribosomal protein L22 642897..643265 Jonesia denitrificans DSM 20603 8379777 YP_003160560.1 CDS Jden_0593 NC_013174.1 643265 644080 D KEGG: cak:Caul_1620 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 643265..644080 Jonesia denitrificans DSM 20603 8379778 YP_003160561.1 CDS Jden_0594 NC_013174.1 644085 644504 D TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: bha:BH0141 50S ribosomal protein L16; 50S ribosomal protein L16 644085..644504 Jonesia denitrificans DSM 20603 8379779 YP_003160562.1 CDS Jden_0595 NC_013174.1 644504 644743 D TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: hne:HNE_2843 ribosomal protein L29; 50S ribosomal protein L29 644504..644743 Jonesia denitrificans DSM 20603 8379780 YP_003160563.1 CDS Jden_0596 NC_013174.1 644751 645023 D PFAM: ribosomal protein S17; KEGG: bsu:BSU01250 30S ribosomal protein S17; 30S ribosomal protein S17 644751..645023 Jonesia denitrificans DSM 20603 8379781 YP_003160564.1 CDS Jden_0597 NC_013174.1 645160 645528 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: bcu:BCAH820_0132 ribosomal protein L14; 50S ribosomal protein L14 645160..645528 Jonesia denitrificans DSM 20603 8379782 YP_003160565.1 CDS Jden_0598 NC_013174.1 645531 645881 D KEGG: ilo:IL1905 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; 50S ribosomal protein L24 645531..645881 Jonesia denitrificans DSM 20603 8379783 YP_003160566.1 CDS Jden_0599 NC_013174.1 645881 646444 D PFAM: ribosomal protein L5; KEGG: abb:ABBFA_000444 ribosomal L5P family C- terminus family protein; 50S ribosomal protein L5 645881..646444 Jonesia denitrificans DSM 20603 8379784 YP_003160567.1 CDS Jden_0600 NC_013174.1 646446 646631 D PFAM: ribosomal protein S14; KEGG: rpsN; 30S ribosomal protein S14; 30S ribosomal protein S14 646446..646631 Jonesia denitrificans DSM 20603 8379785 YP_003160568.1 CDS Jden_0601 NC_013174.1 646706 647104 D PFAM: ribosomal protein S8; KEGG: bha:BH0148 30S ribosomal protein S8; 30S ribosomal protein S8 646706..647104 Jonesia denitrificans DSM 20603 8379786 YP_003160569.1 CDS Jden_0602 NC_013174.1 647126 647665 D PFAM: ribosomal protein L6; KEGG: bha:BH0149 50S ribosomal protein L6; 50S ribosomal protein L6 647126..647665 Jonesia denitrificans DSM 20603 8379787 YP_003160570.1 CDS Jden_0603 NC_013174.1 647668 648039 D TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: mxa:MXAN_3315 ribosomal protein L18; 50S ribosomal protein L18 647668..648039 Jonesia denitrificans DSM 20603 8379788 YP_003160571.1 CDS Jden_0604 NC_013174.1 648074 648730 D TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: slo:Shew_0175 30S ribosomal protein S5; 30S ribosomal protein S5 648074..648730 Jonesia denitrificans DSM 20603 8379789 YP_003160572.1 CDS Jden_0605 NC_013174.1 648730 648912 D TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: gbe:GbCGDNIH1_0572 LSU ribosomal protein L30P; 50S ribosomal protein L30 648730..648912 Jonesia denitrificans DSM 20603 8379790 YP_003160573.1 CDS Jden_0606 NC_013174.1 648915 649391 D TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: cak:Caul_1633 ribosomal protein L15; 50S ribosomal protein L15 648915..649391 Jonesia denitrificans DSM 20603 8379791 YP_003160574.1 CDS Jden_0607 NC_013174.1 649700 650989 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY; preprotein translocase subunit SecY 649700..650989 Jonesia denitrificans DSM 20603 8379792 YP_003160575.1 CDS Jden_0608 NC_013174.1 650986 651573 D TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: sml:Smlt3886 putative adenylate kinase (fragment); adenylate kinase 650986..651573 Jonesia denitrificans DSM 20603 8379793 YP_003160576.1 CDS Jden_0609 NC_013174.1 651831 652052 D KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 651831..652052 Jonesia denitrificans DSM 20603 8379794 YP_003160577.1 CDS Jden_0610 NC_013174.1 652105 652218 D TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aba:Acid345_1250 LSU ribosomal protein L36P; 50S ribosomal protein L36 652105..652218 Jonesia denitrificans DSM 20603 8379795 YP_003160578.1 CDS Jden_0611 NC_013174.1 652424 652798 D PFAM: ribosomal protein S13; KEGG: gsu:GSU2834 30S ribosomal protein S13; 30S ribosomal protein S13 652424..652798 Jonesia denitrificans DSM 20603 8379796 YP_003160579.1 CDS Jden_0612 NC_013174.1 652870 653277 D PFAM: ribosomal protein S11; KEGG: dal:Dalk_1891 ribosomal protein S11; 30S ribosomal protein S11 652870..653277 Jonesia denitrificans DSM 20603 8379797 YP_003160580.1 CDS Jden_0613 NC_013174.1 653417 654421 D KEGG: bcu:BCAH820_0150 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 653417..654421 Jonesia denitrificans DSM 20603 8379798 YP_003160581.1 CDS Jden_0614 NC_013174.1 654473 655018 D TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: gur:Gura_1093 50S ribosomal protein L17; 50S ribosomal protein L17 654473..655018 Jonesia denitrificans DSM 20603 8379799 YP_003160582.1 CDS Jden_0615 NC_013174.1 655043 655975 D KEGG: psa:PST_1778 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 655043..655975 Jonesia denitrificans DSM 20603 8379800 YP_003160583.1 CDS Jden_0616 NC_013174.1 656022 656936 D PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bsu:BSU02330 hypothetical protein; rhodanese domain-containing protein 656022..656936 Jonesia denitrificans DSM 20603 8379801 YP_003160584.1 CDS Jden_0617 NC_013174.1 657234 657677 D TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: azo:azo2760 50S ribosomal protein L13; 50S ribosomal protein L13 657234..657677 Jonesia denitrificans DSM 20603 8379802 YP_003160585.1 CDS Jden_0618 NC_013174.1 657718 658209 D PFAM: ribosomal protein S9; KEGG: mgm:Mmc1_0247 SSU ribosomal protein S9P; 30S ribosomal protein S9 657718..658209 Jonesia denitrificans DSM 20603 8379803 YP_003160586.1 CDS Jden_0619 NC_013174.1 658445 659797 D TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcu:BCAH820_0180 phosphoglucosamine mutase; phosphoglucosamine mutase 658445..659797 Jonesia denitrificans DSM 20603 8379804 YP_003160587.1 CDS Jden_0620 NC_013174.1 659817 660554 D PFAM: formylmethionine deformylase; KEGG: aba:Acid345_3916 peptide deformylase; Peptide deformylase 659817..660554 Jonesia denitrificans DSM 20603 8379805 YP_003160588.1 CDS Jden_0621 NC_013174.1 660542 661258 D KEGG: abb:ABBFA_003391 protein DedA (protein DSG-1); putative membrane-associated protein 660542..661258 Jonesia denitrificans DSM 20603 8379806 YP_003160589.1 CDS Jden_0622 NC_013174.1 661280 662254 R TIGRFAM: pantothenate kinase; KEGG: met:M446_6788 pantothenate kinase; pantothenate kinase complement(661280..662254) Jonesia denitrificans DSM 20603 8379807 YP_003160590.1 CDS Jden_0623 NC_013174.1 662471 664336 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: aba:Acid345_0997 glutamine--fructose-6- phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 662471..664336 Jonesia denitrificans DSM 20603 8379808 YP_003160591.1 CDS Jden_0624 NC_013174.1 664342 664692 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: ade:Adeh_1501 holo-(acyl-carrier-protein) synthase; 4'-phosphopantetheinyl transferase 664342..664692 Jonesia denitrificans DSM 20603 8379809 YP_003160592.1 CDS Jden_0625 NC_013174.1 664735 665733 R PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like; luciferase-like monooxygenase complement(664735..665733) Jonesia denitrificans DSM 20603 8379810 YP_003160593.1 CDS Jden_0626 NC_013174.1 665776 667356 D PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: rpd:RPD_2899 hypothetical protein; hypothetical protein 665776..667356 Jonesia denitrificans DSM 20603 8379811 YP_003160594.1 CDS Jden_0627 NC_013174.1 667628 668860 D KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 667628..668860 Jonesia denitrificans DSM 20603 8379812 YP_003160595.1 CDS Jden_0628 NC_013174.1 668869 669414 D PFAM: protein of unknown function UPF0079; KEGG: ccs:CCNA_03648 ATP/GTP hydrolase; hypothetical protein 668869..669414 Jonesia denitrificans DSM 20603 8379813 YP_003160596.1 CDS Jden_0629 NC_013174.1 669417 670106 D PFAM: peptidase M22 glycoprotease; KEGG: rpc:RPC_0464 peptidase M22, glycoprotease; peptidase M22 glycoprotease 669417..670106 Jonesia denitrificans DSM 20603 8379814 YP_003160597.1 CDS Jden_0630 NC_013174.1 670103 670669 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: glo:Glov_2306 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 670103..670669 Jonesia denitrificans DSM 20603 8379815 YP_003160598.1 CDS Jden_0631 NC_013174.1 670666 671583 D PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bpt:Bpet3067 thiosulfate sulfurtransferase; rhodanese domain-containing protein 670666..671583 Jonesia denitrificans DSM 20603 8379816 YP_003160599.1 CDS Jden_0632 NC_013174.1 671615 672658 D KEGG: bcb:BCB4264_A0292 putative O- sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 671615..672658 Jonesia denitrificans DSM 20603 8379817 YP_003160600.1 CDS Jden_0633 NC_013174.1 672680 673819 R PFAM: glutamate--cysteine ligase GCS2; KEGG: bba:Bd2263 hypothetical protein; glutamate--cysteine ligase complement(672680..673819) Jonesia denitrificans DSM 20603 8379818 YP_003160601.1 CDS Jden_0634 NC_013174.1 673829 675067 R hypothetical protein complement(673829..675067) Jonesia denitrificans DSM 20603 8379819 YP_003160602.1 CDS Jden_0635 NC_013174.1 675213 675506 D PFAM: chaperonin Cpn10; KEGG: sat:SYN_00062 co-chaperonin; chaperonin Cpn10 675213..675506 Jonesia denitrificans DSM 20603 8379820 YP_003160603.1 CDS Jden_0636 NC_013174.1 675663 675971 R PFAM: transcription factor WhiB; transcription factor WhiB complement(675663..675971) Jonesia denitrificans DSM 20603 8379821 YP_003160604.1 CDS Jden_0637 NC_013174.1 676569 677768 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kpe:KPK_3793 transcriptional regulator MlrA; transcriptional regulator, MerR family 676569..677768 Jonesia denitrificans DSM 20603 8379822 YP_003160605.1 CDS Jden_0638 NC_013174.1 677870 679384 D KEGG: bha:BH0020 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 677870..679384 Jonesia denitrificans DSM 20603 8379823 YP_003160606.1 CDS Jden_0639 NC_013174.1 679434 680522 D PFAM: pseudouridine synthase; KEGG: pseudouridine synthase; pseudouridine synthase 679434..680522 Jonesia denitrificans DSM 20603 8379824 YP_003160607.1 CDS Jden_0640 NC_013174.1 680478 681194 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce7572 DNA polymerase III, epsilon subunit; Exonuclease RNase T and DNA polymerase III complement(680478..681194) Jonesia denitrificans DSM 20603 8379825 YP_003160608.1 CDS Jden_0641 NC_013174.1 681353 682498 D TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; KEGG: inosine-5-monophosphate dehydrogenase; K00088 IMP dehydrogenase; IMP dehydrogenase family protein 681353..682498 Jonesia denitrificans DSM 20603 8379826 YP_003160609.1 CDS Jden_0642 NC_013174.1 682613 683812 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dps:DP0559 acetate kinase; acetate kinase complement(682613..683812) Jonesia denitrificans DSM 20603 8379827 YP_003160610.1 CDS Jden_0643 NC_013174.1 683848 685947 R KEGG: net:Neut_1995 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase complement(683848..685947) Jonesia denitrificans DSM 20603 8379828 YP_003160611.1 CDS Jden_0644 NC_013174.1 686063 686320 D hypothetical protein 686063..686320 Jonesia denitrificans DSM 20603 8379829 YP_003160612.1 CDS Jden_0645 NC_013174.1 686330 687265 D KEGG: reu:Reut_A0320 putative transmembrane cytochrome oxidase; hypothetical protein 686330..687265 Jonesia denitrificans DSM 20603 8379830 YP_003160613.1 CDS Jden_0646 NC_013174.1 687274 689061 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hch:HCH_00144 ABC-type multidrug transport system, ATPase and permease components; ABC transporter complement(687274..689061) Jonesia denitrificans DSM 20603 8379831 YP_003160614.1 CDS Jden_0647 NC_013174.1 689048 690817 R PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: bha:BH2336 ABC transporter ATP-binding protein; ABC transporter permease complement(689048..690817) Jonesia denitrificans DSM 20603 8379832 YP_003160615.1 CDS Jden_0648 NC_013174.1 690878 691267 D KEGG: mxa:MXAN_7409 hypothetical protein; hypothetical protein 690878..691267 Jonesia denitrificans DSM 20603 8379833 YP_003160616.1 CDS Jden_0649 NC_013174.1 691273 691926 D hypothetical protein 691273..691926 Jonesia denitrificans DSM 20603 8379834 YP_003160617.1 CDS Jden_0650 NC_013174.1 691933 693537 D KEGG: bha:BH0607 bifunctional GMP synthase/glutamine amidotransferase protein; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; GMP synthase 691933..693537 Jonesia denitrificans DSM 20603 8379835 YP_003160618.1 CDS Jden_0651 NC_013174.1 693734 694309 D hypothetical protein 693734..694309 Jonesia denitrificans DSM 20603 8379836 YP_003160619.1 CDS Jden_0652 NC_013174.1 694343 695650 D KEGG: Hypothetical protein CBG02561; hypothetical protein 694343..695650 Jonesia denitrificans DSM 20603 8379837 YP_003160620.1 CDS Jden_0653 NC_013174.1 695647 695913 R hypothetical protein complement(695647..695913) Jonesia denitrificans DSM 20603 8379838 YP_003160621.1 CDS Jden_0654 NC_013174.1 695910 697304 R PFAM: PspC domain protein; KEGG: similar to mucin; phage shock protein C, PspC complement(695910..697304) Jonesia denitrificans DSM 20603 8379839 YP_003160622.1 CDS Jden_0655 NC_013174.1 697402 698751 D PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: plu:plu2041 hypothetical protein; putative signal transduction histidine kinase 697402..698751 Jonesia denitrificans DSM 20603 8379840 YP_003160623.1 CDS Jden_0656 NC_013174.1 698748 699404 D PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bph:Bphy_6192 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family 698748..699404 Jonesia denitrificans DSM 20603 8379841 YP_003160624.1 CDS Jden_0657 NC_013174.1 699493 700185 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: scl:sce0245 sirohydrochlorin cobaltochelatase; cobalamin (vitamin B12) biosynthesis CbiX protein 699493..700185 Jonesia denitrificans DSM 20603 8379842 YP_003160625.1 CDS Jden_0658 NC_013174.1 700103 701446 R TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bpe:BP1055 siroheme synthase; uroporphyrin-III C-methyltransferase complement(700103..701446) Jonesia denitrificans DSM 20603 8379843 YP_003160626.1 CDS Jden_0659 NC_013174.1 701468 702772 R KEGG: ank:AnaeK_2111 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase, large subunit complement(701468..702772) Jonesia denitrificans DSM 20603 8379844 YP_003160627.1 CDS Jden_0660 NC_013174.1 702772 703689 R TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit complement(702772..703689) Jonesia denitrificans DSM 20603 8379845 YP_003160628.1 CDS Jden_0661 NC_013174.1 703686 704510 R TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sal:Sala_0768 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(703686..704510) Jonesia denitrificans DSM 20603 8379846 YP_003160629.1 CDS Jden_0662 NC_013174.1 704507 706210 R PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: aba:Acid345_2373 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; sulfite reductase complement(704507..706210) Jonesia denitrificans DSM 20603 8379847 YP_003160630.1 CDS Jden_0663 NC_013174.1 706613 706975 D hypothetical protein 706613..706975 Jonesia denitrificans DSM 20603 8379848 YP_003160631.1 CDS Jden_0664 NC_013174.1 706989 707462 D KEGG: mlo:mll2193 hypothetical protein; hypothetical protein 706989..707462 Jonesia denitrificans DSM 20603 8379849 YP_003160632.1 CDS Jden_0665 NC_013174.1 707498 708247 R PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein; GntR family transcriptional regulator complement(707498..708247) Jonesia denitrificans DSM 20603 8379850 YP_003160633.1 CDS Jden_0666 NC_013174.1 708355 709419 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bbr:BB2160 putative extracellular solute- binding protein; family 3 extracellular solute-binding protein 708355..709419 Jonesia denitrificans DSM 20603 8379851 YP_003160634.1 CDS Jden_0667 NC_013174.1 709398 710153 D TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2161 putative inner membrane component of binding-protein-dependent transport system; ectoine/hydroxyectoine ABC transporter, permease protein EhuC 709398..710153 Jonesia denitrificans DSM 20603 8379852 YP_003160635.1 CDS Jden_0668 NC_013174.1 710150 710806 D TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5517 ectoine/hydroxyectoine ABC transporter, permease protein EhuD; ectoine/hydroxyectoine ABC transporter, permease protein EhuD 710150..710806 Jonesia denitrificans DSM 20603 8379853 YP_003160636.1 CDS Jden_0669 NC_013174.1 710868 711611 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2156 ABC transporter related; ABC transporter 710868..711611 Jonesia denitrificans DSM 20603 8379854 YP_003160637.1 CDS Jden_0670 NC_013174.1 711733 714234 D TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: bcz:BCZK0278 ATP-dependent DNA helicase; ATP-dependent DNA helicase PcrA 711733..714234 Jonesia denitrificans DSM 20603 8379855 YP_003160638.1 CDS Jden_0671 NC_013174.1 714380 715546 D KEGG: nis:NIS_0838 succinyl-CoA synthase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase, beta subunit 714380..715546 Jonesia denitrificans DSM 20603 8379856 YP_003160639.1 CDS Jden_0672 NC_013174.1 715569 716462 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: ses:SARI_02209 succinyl-CoA synthetase subunit alpha; succinyl-CoA synthetase, alpha subunit 715569..716462 Jonesia denitrificans DSM 20603 8379857 YP_003160640.1 CDS Jden_0673 NC_013174.1 716683 718284 D PFAM: Cache type 2 domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rce:RC1_0295 methyl-accepting chemotaxis protein, putative; methyl-accepting chemotaxis sensory transducer with Cache sensor 716683..718284 Jonesia denitrificans DSM 20603 8379858 YP_003160641.1 CDS Jden_0674 NC_013174.1 718318 720732 R KEGG: cti:RALTA_B1369 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(718318..720732) Jonesia denitrificans DSM 20603 8379859 YP_003160642.1 CDS Jden_0675 NC_013174.1 726573 727955 D KEGG: bcn:Bcen_2056 copper resistance D; hypothetical protein 726573..727955 Jonesia denitrificans DSM 20603 8381748 YP_003160643.1 CDS Jden_0676 NC_013174.1 727952 728455 R hypothetical protein complement(727952..728455) Jonesia denitrificans DSM 20603 8379861 YP_003160644.1 CDS Jden_0677 NC_013174.1 728562 729239 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pca:Pcar_1292 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 728562..729239 Jonesia denitrificans DSM 20603 8379862 YP_003160645.1 CDS Jden_0678 NC_013174.1 729392 730993 D KEGG: acr:Acry_0027 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 729392..730993 Jonesia denitrificans DSM 20603 8379863 YP_003160646.1 CDS Jden_0679 NC_013174.1 731083 732396 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:H16_B0802 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(731083..732396) Jonesia denitrificans DSM 20603 8379864 YP_003160647.1 CDS Jden_0680 NC_013174.1 732770 733834 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: bha:BH1554 riboflavin specific deaminase; riboflavin biosynthesis protein RibD 732770..733834 Jonesia denitrificans DSM 20603 8379865 YP_003160648.1 CDS Jden_0681 NC_013174.1 733827 734459 D TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: acp:A2cp1_2925 riboflavin synthase, alpha subunit; riboflavin synthase subunit alpha 733827..734459 Jonesia denitrificans DSM 20603 8379866 YP_003160649.1 CDS Jden_0682 NC_013174.1 734456 735691 D KEGG: gox:GOX0980 3,4-dihydroy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 734456..735691 Jonesia denitrificans DSM 20603 8379867 YP_003160650.1 CDS Jden_0683 NC_013174.1 735701 736174 D KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 735701..736174 Jonesia denitrificans DSM 20603 8379868 YP_003160651.1 CDS Jden_0684 NC_013174.1 736171 736473 D hypothetical protein 736171..736473 Jonesia denitrificans DSM 20603 8379869 YP_003160652.1 CDS Jden_0685 NC_013174.1 736589 737809 D KEGG: bov:BOV_1161 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 736589..737809 Jonesia denitrificans DSM 20603 8379870 YP_003160653.1 CDS Jden_0686 NC_013174.1 737865 738608 R PFAM: regulatory protein TetR; KEGG: rpc:RPC_2257 TetR family transcriptional regulator; TetR family transcriptional regulator complement(737865..738608) Jonesia denitrificans DSM 20603 8379871 YP_003160654.1 CDS Jden_0687 NC_013174.1 738736 741576 D TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcr:BCAH187_A1238 phage infection protein; YhgE/Pip C-terminal domain-containing protein 738736..741576 Jonesia denitrificans DSM 20603 8379872 YP_003160655.1 CDS Jden_0688 NC_013174.1 741696 742679 D TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: hha:Hhal_0830 malate dehydrogenase; malate dehydrogenase 741696..742679 Jonesia denitrificans DSM 20603 8379873 YP_003160656.1 CDS Jden_0689 NC_013174.1 742730 744049 D PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce4550 major facilitator superfamily permease; major facilitator superfamily protein 742730..744049 Jonesia denitrificans DSM 20603 8379874 YP_003160657.1 CDS Jden_0690 NC_013174.1 744060 744920 R TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid- binding ACT domain protein; KEGG: formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase complement(744060..744920) Jonesia denitrificans DSM 20603 8379875 YP_003160658.1 CDS Jden_0691 NC_013174.1 744990 745472 D PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_1732 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 744990..745472 Jonesia denitrificans DSM 20603 8379876 YP_003160659.1 CDS Jden_0692 NC_013174.1 745479 746294 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sugar ABC transporter; ABC transporter complement(745479..746294) Jonesia denitrificans DSM 20603 8379877 YP_003160660.1 CDS Jden_0693 NC_013174.1 746291 747499 R PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon; ROK family protein complement(746291..747499) Jonesia denitrificans DSM 20603 8379878 YP_003160661.1 CDS Jden_0694 NC_013174.1 747800 749089 D PFAM: glycine hydroxymethyltransferase; KEGG: pca:Pcar_1442 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 747800..749089 Jonesia denitrificans DSM 20603 8379879 YP_003160662.1 CDS Jden_0695 NC_013174.1 749102 749995 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pca:Pcar_2461 putative methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 749102..749995 Jonesia denitrificans DSM 20603 8379880 YP_003160663.1 CDS Jden_0696 NC_013174.1 750002 750139 D hypothetical protein 750002..750139 Jonesia denitrificans DSM 20603 8379881 YP_003160664.1 CDS Jden_0697 NC_013174.1 750319 754839 D PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; Endonuclease/exonuclease/phosphatase; KEGG: rpb:RPB_0803 5'-nucleotidase; 5'-nucleotidase 750319..754839 Jonesia denitrificans DSM 20603 8379882 YP_003160665.1 CDS Jden_0698 NC_013174.1 754901 755764 D TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bph:Bphy_0057 exodeoxyribonuclease III Xth; exodeoxyribonuclease III Xth 754901..755764 Jonesia denitrificans DSM 20603 8379883 YP_003160666.1 CDS Jden_0699 NC_013174.1 755730 756893 R PFAM: protein of unknown function DUF59; KEGG: bca:BCE_3578 mrp protein; hypothetical protein complement(755730..756893) Jonesia denitrificans DSM 20603 8379884 YP_003160667.1 CDS Jden_0700 NC_013174.1 756914 757459 R PFAM: protein of unknown function DUF1003; KEGG: pfo:Pfl01_4309 hypothetical protein; hypothetical protein complement(756914..757459) Jonesia denitrificans DSM 20603 8379885 YP_003160668.1 CDS Jden_0701 NC_013174.1 757452 758747 R PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region; MgtE integral membrane protein complement(757452..758747) Jonesia denitrificans DSM 20603 8379886 YP_003160669.1 CDS Jden_0702 NC_013174.1 758813 759700 D KEGG: har:HEAR2359 putative permease; hypothetical protein 758813..759700 Jonesia denitrificans DSM 20603 8379887 YP_003160670.1 CDS Jden_0703 NC_013174.1 759704 761257 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: scl:sce8667 hypothetical protein; peptidase M24 complement(759704..761257) Jonesia denitrificans DSM 20603 8379888 YP_003160671.1 CDS Jden_0704 NC_013174.1 761296 762138 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ade:Adeh_2582 phosphoesterase, PHP-like; PHP domain-containing protein 761296..762138 Jonesia denitrificans DSM 20603 8379889 YP_003160672.1 CDS Jden_0705 NC_013174.1 762135 762767 D PFAM: multiple antibiotic resistance (MarC)-related protein; Integral membrane protein TerC; KEGG: sil:SPO2448 MarC membrane protein; multiple antibiotic resistance (MarC)-like protein 762135..762767 Jonesia denitrificans DSM 20603 8379890 YP_003160673.1 CDS Jden_0706 NC_013174.1 762916 763599 D hypothetical protein 762916..763599 Jonesia denitrificans DSM 20603 8379891 YP_003160674.1 CDS Jden_0707 NC_013174.1 763648 765282 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: dps:DP1690 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(763648..765282) Jonesia denitrificans DSM 20603 8379892 YP_003160675.1 CDS Jden_0708 NC_013174.1 765486 766202 D hypothetical protein 765486..766202 Jonesia denitrificans DSM 20603 8379893 YP_003160676.1 CDS Jden_0709 NC_013174.1 766259 766483 R hypothetical protein complement(766259..766483) Jonesia denitrificans DSM 20603 8379894 YP_003160677.1 CDS Jden_0710 NC_013174.1 766558 767304 R PFAM: regulatory protein TetR; KEGG: dsh:Dshi_3038 TetR family transcriptional regulator; TetR family transcriptional regulator complement(766558..767304) Jonesia denitrificans DSM 20603 8379895 YP_003160678.1 CDS Jden_0711 NC_013174.1 767420 770599 D PFAM: UvrD/REP helicase; KEGG: noc:Noc_0599 DNA-dependent helicase II; UvrD/REP helicase 767420..770599 Jonesia denitrificans DSM 20603 8379896 YP_003160679.1 CDS Jden_0712 NC_013174.1 770596 773907 D PFAM: UvrD/REP helicase; KEGG: aba:Acid345_0047 ATP-dependent DNA helicase, Rep family; UvrD/REP helicase 770596..773907 Jonesia denitrificans DSM 20603 8379897 YP_003160680.1 CDS Jden_0713 NC_013174.1 773901 775268 R PFAM: aminoglycoside phosphotransferase; KEGG: eum:ECUMN_4827 macrolide 2'- phosphotransferase I; aminoglycoside phosphotransferase complement(773901..775268) Jonesia denitrificans DSM 20603 8379898 YP_003160681.1 CDS Jden_0714 NC_013174.1 775342 775617 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: gme:Gmet_2959 glutaredoxin-like protein, YruB; glutaredoxin-like protein complement(775342..775617) Jonesia denitrificans DSM 20603 8379899 YP_003160682.1 CDS Jden_0715 NC_013174.1 775708 777780 D PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative; UvrD/REP helicase 775708..777780 Jonesia denitrificans DSM 20603 8379900 YP_003160683.1 CDS Jden_0716 NC_013174.1 777899 778039 D hypothetical protein 777899..778039 Jonesia denitrificans DSM 20603 8379901 YP_003160684.1 CDS Jden_0717 NC_013174.1 778211 778600 D PFAM: transcription factor WhiB; HMG-I and HMG-Y DNA-binding domain protein; transcription factor WhiB 778211..778600 Jonesia denitrificans DSM 20603 8379902 YP_003160685.1 CDS Jden_0718 NC_013174.1 778602 778694 D hypothetical protein 778602..778694 Jonesia denitrificans DSM 20603 8379903 YP_003160686.1 CDS Jden_0719 NC_013174.1 778695 779696 R hypothetical protein complement(778695..779696) Jonesia denitrificans DSM 20603 8379904 YP_003160687.1 CDS Jden_0720 NC_013174.1 779838 780458 D PFAM: protein of unknown function DUF45; KEGG: mmr:Mmar10_2107 hypothetical protein; hypothetical protein 779838..780458 Jonesia denitrificans DSM 20603 8379905 YP_003160688.1 CDS Jden_0721 NC_013174.1 780437 781897 R hypothetical protein complement(780437..781897) Jonesia denitrificans DSM 20603 8379906 YP_003160689.1 CDS Jden_0722 NC_013174.1 781980 783080 D KEGG: dal:Dalk_1637 NAD-dependent epimerase/dehydratase; hypothetical protein 781980..783080 Jonesia denitrificans DSM 20603 8379907 YP_003160690.1 CDS Jden_0723 NC_013174.1 783183 784259 D KEGG: bsu:BSU15050 hypothetical protein; hypothetical protein 783183..784259 Jonesia denitrificans DSM 20603 8379908 YP_003160691.1 CDS Jden_0724 NC_013174.1 784336 784917 R hypothetical protein complement(784336..784917) Jonesia denitrificans DSM 20603 8379909 YP_003160692.1 CDS Jden_0725 NC_013174.1 785071 788127 D PFAM: protein of unknown function UPF0182; KEGG: mno:Mnod_3465 protein of unknown function UPF0182; hypothetical protein 785071..788127 Jonesia denitrificans DSM 20603 8379910 YP_003160693.1 CDS Jden_0726 NC_013174.1 788313 789299 D PFAM: Aldose 1-epimerase; KEGG: atc:AGR_L_1546 hypothetical protein; aldose 1-epimerase 788313..789299 Jonesia denitrificans DSM 20603 8379911 YP_003160694.1 CDS Jden_0727 NC_013174.1 789708 790067 D PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: aeh:Mlg_2713 ArsR family transcriptional regulator; ArsR family transcriptional regulator 789708..790067 Jonesia denitrificans DSM 20603 8381750 YP_003160695.1 CDS Jden_0728 NC_013174.1 790064 791125 D PFAM: permease; KEGG: ank:AnaeK_4014 permease; permease 790064..791125 Jonesia denitrificans DSM 20603 8379913 YP_003160696.1 CDS Jden_0729 NC_013174.1 791166 791414 D KEGG: tmz:Tmz1t_1856 redox-active disulfide protein 2; redox-active disulfide protein 2 791166..791414 Jonesia denitrificans DSM 20603 8379914 YP_003160697.1 CDS Jden_0730 NC_013174.1 791502 792443 D KEGG: hypothetical protein; hypothetical protein 791502..792443 Jonesia denitrificans DSM 20603 8379915 YP_003160698.1 CDS Jden_0731 NC_013174.1 792567 795371 R PFAM: cellulose-binding family II; glycosyl hydrolase BNR repeat-containing protein; SMART: cellulose-binding family II; KEGG: cja:CJA_2477 endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A; cellulose-binding family II protein complement(792567..795371) Jonesia denitrificans DSM 20603 8379916 YP_003160699.1 CDS Jden_0732 NC_013174.1 795605 797116 R PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; glycoside hydrolase family protein complement(795605..797116) Jonesia denitrificans DSM 20603 8379917 YP_003160700.1 CDS Jden_0733 NC_013174.1 797269 798735 R PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; glycoside hydrolase family protein complement(797269..798735) Jonesia denitrificans DSM 20603 8379918 YP_003160701.1 CDS Jden_0734 NC_013174.1 798744 800486 R PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: azc:AZC_1301 endoglucanase; glycoside hydrolase family protein complement(798744..800486) Jonesia denitrificans DSM 20603 8379919 YP_003160702.1 CDS Jden_0735 NC_013174.1 800547 802418 R PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: rso:RS03897 exoglucanase A; glycoside hydrolase family protein complement(800547..802418) Jonesia denitrificans DSM 20603 8379920 YP_003160703.1 CDS Jden_0736 NC_013174.1 802531 803595 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce0662 LacI family transcription regulator; transcriptional regulator, LacI family complement(802531..803595) Jonesia denitrificans DSM 20603 8379921 YP_003160704.1 CDS Jden_0738 NC_013174.1 805789 806220 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 hypothetical protein; UspA domain-containing protein complement(805789..806220) Jonesia denitrificans DSM 20603 8381751 YP_003160705.1 CDS Jden_0739 NC_013174.1 806239 807987 R KEGG: hha:Hhal_0084 hypothetical protein; hypothetical protein complement(806239..807987) Jonesia denitrificans DSM 20603 8379923 YP_003160706.1 CDS Jden_0740 NC_013174.1 808163 809506 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dal:Dalk_3397 PhoH family protein; PhoH family protein 808163..809506 Jonesia denitrificans DSM 20603 8379924 YP_003160707.1 CDS Jden_0741 NC_013174.1 809538 810026 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mlo:mlr3448 MarR family regulatory protein; transcriptional regulator, MarR family 809538..810026 Jonesia denitrificans DSM 20603 8379925 YP_003160708.1 CDS Jden_0742 NC_013174.1 810153 811568 R PFAM: fumarate lyase; KEGG: hha:Hhal_0025 fumarate lyase; fumarate lyase complement(810153..811568) Jonesia denitrificans DSM 20603 8379926 YP_003160709.1 CDS Jden_0743 NC_013174.1 811666 812298 R PFAM: carbonic anhydrase; KEGG: mch:Mchl_4468 carbonic anhydrase; carbonic anhydrase complement(811666..812298) Jonesia denitrificans DSM 20603 8379927 YP_003160710.1 CDS Jden_0744 NC_013174.1 812453 813388 R PFAM: PfkB domain protein; KEGG: sit:TM1040_3042 PfkB; PfkB domain-containing protein complement(812453..813388) Jonesia denitrificans DSM 20603 8379928 YP_003160711.1 CDS Jden_0745 NC_013174.1 813394 813630 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: AGAP012846-PA; exodeoxyribonuclease VII small subunit complement(813394..813630) Jonesia denitrificans DSM 20603 8379929 YP_003160712.1 CDS Jden_0746 NC_013174.1 813627 815030 R KEGG: sat:SYN_02459 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(813627..815030) Jonesia denitrificans DSM 20603 8379930 YP_003160713.1 CDS Jden_0747 NC_013174.1 815155 816261 D KEGG: sus:Acid_1259 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 815155..816261 Jonesia denitrificans DSM 20603 8379931 YP_003160714.1 CDS Jden_0748 NC_013174.1 816354 817463 D TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: nmn:NMCC_0384 translation-associated GTPase; GTP-binding protein YchF 816354..817463 Jonesia denitrificans DSM 20603 8379932 YP_003160715.1 CDS Jden_0749 NC_013174.1 817542 818264 D PFAM: Methyltransferase type 11; KEGG: pau:PA14_11170 hypothetical protein; type 11 methyltransferase 817542..818264 Jonesia denitrificans DSM 20603 8379933 YP_003160716.1 CDS Jden_0750 NC_013174.1 818269 818622 D KEGG: hha:Hhal_1672 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 818269..818622 Jonesia denitrificans DSM 20603 8379934 YP_003160717.1 CDS Jden_0751 NC_013174.1 818622 818963 D KEGG: scl:sce7493 putative hydrolase; putative hydrolase 818622..818963 Jonesia denitrificans DSM 20603 8379935 YP_003160718.1 CDS Jden_0752 NC_013174.1 819235 819543 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_2159 hypothetical protein; XRE family transcriptional regulator complement(819235..819543) Jonesia denitrificans DSM 20603 8379936 YP_003160719.1 CDS Jden_0753 NC_013174.1 819974 820300 D hypothetical protein 819974..820300 Jonesia denitrificans DSM 20603 8379937 YP_003160720.1 CDS Jden_0754 NC_013174.1 820326 822389 D hypothetical protein 820326..822389 Jonesia denitrificans DSM 20603 8379938 YP_003160721.1 CDS Jden_0755 NC_013174.1 822389 823087 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1534 ABC transporter related; ABC transporter 822389..823087 Jonesia denitrificans DSM 20603 8379939 YP_003160722.1 CDS Jden_0756 NC_013174.1 823185 823604 R hypothetical protein complement(823185..823604) Jonesia denitrificans DSM 20603 8379940 YP_003160723.1 CDS Jden_0757 NC_013174.1 823601 824041 R hypothetical protein complement(823601..824041) Jonesia denitrificans DSM 20603 8379941 YP_003160724.1 CDS Jden_0758 NC_013174.1 824051 824395 R hypothetical protein complement(824051..824395) Jonesia denitrificans DSM 20603 8379942 YP_003160725.1 CDS Jden_0759 NC_013174.1 824388 824585 R hypothetical protein complement(824388..824585) Jonesia denitrificans DSM 20603 8379943 YP_003160726.1 CDS Jden_0760 NC_013174.1 824668 825009 R hypothetical protein complement(824668..825009) Jonesia denitrificans DSM 20603 8379944 YP_003160727.1 CDS Jden_0761 NC_013174.1 825013 825465 R TIGRFAM: prevent-host-death family protein; prevent-host-death family protein complement(825013..825465) Jonesia denitrificans DSM 20603 8379945 YP_003160728.1 CDS Jden_0762 NC_013174.1 825606 825968 R hypothetical protein complement(825606..825968) Jonesia denitrificans DSM 20603 8379946 YP_003160729.1 CDS Jden_0763 NC_013174.1 826004 826231 R hypothetical protein complement(826004..826231) Jonesia denitrificans DSM 20603 8379947 YP_003160730.1 CDS Jden_0764 NC_013174.1 826322 826657 R hypothetical protein complement(826322..826657) Jonesia denitrificans DSM 20603 8379948 YP_003160731.1 CDS Jden_0765 NC_013174.1 826762 827751 R PFAM: Clp domain protein; KEGG: oan:Oant_4466 ATPase AAA-2 domain protein; Clp domain-containing protein complement(826762..827751) Jonesia denitrificans DSM 20603 8379949 YP_003160732.1 CDS Jden_0766 NC_013174.1 827748 827993 R hypothetical protein complement(827748..827993) Jonesia denitrificans DSM 20603 8379950 YP_003160733.1 CDS Jden_0767 NC_013174.1 828193 828474 D PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer; plasmid maintenance system killer protein 828193..828474 Jonesia denitrificans DSM 20603 8379951 YP_003160734.1 CDS Jden_0768 NC_013174.1 828461 828763 D KEGG: hha:Hhal_1672 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 828461..828763 Jonesia denitrificans DSM 20603 8379952 YP_003160735.1 CDS Jden_0769 NC_013174.1 828760 829275 D PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_3735 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 828760..829275 Jonesia denitrificans DSM 20603 8379953 YP_003160736.1 CDS Jden_0770 NC_013174.1 829365 829751 R hypothetical protein complement(829365..829751) Jonesia denitrificans DSM 20603 8379954 YP_003160737.1 CDS Jden_0771 NC_013174.1 829789 830076 R KEGG: smt:Smal_0710 transcriptional regulator, ArsR family; hypothetical protein complement(829789..830076) Jonesia denitrificans DSM 20603 8379955 YP_003160738.1 CDS Jden_0772 NC_013174.1 830174 830362 D hypothetical protein 830174..830362 Jonesia denitrificans DSM 20603 8379956 YP_003160739.1 CDS Jden_0773 NC_013174.1 830505 830759 D PFAM: plasmid stabilization system; KEGG: gur:Gura_2099 addiction module antitoxin; plasmid stabilization system 830505..830759 Jonesia denitrificans DSM 20603 8379957 YP_003160740.1 CDS Jden_0774 NC_013174.1 830881 831534 D KEGG: rpa:RPA1621 hypothetical protein; hypothetical protein 830881..831534 Jonesia denitrificans DSM 20603 8379958 YP_003160741.1 CDS Jden_0776 NC_013174.1 832868 834760 R TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afe:Lferr_0209 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase complement(832868..834760) Jonesia denitrificans DSM 20603 8381752 YP_003160742.1 CDS Jden_0777 NC_013174.1 834757 835116 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bmv:BMASAVP1_A2519 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(834757..835116) Jonesia denitrificans DSM 20603 8379960 YP_003160743.1 CDS Jden_0778 NC_013174.1 835199 836266 R PFAM: Luciferase-like monooxygenase; KEGG: rpa:RPA1957 alkanal monooxygenase (LuxA-like protein); luciferase-like monooxygenase complement(835199..836266) Jonesia denitrificans DSM 20603 8379961 YP_003160744.1 CDS Jden_0779 NC_013174.1 836481 836693 D KEGG: tgr:Tgr7_3300 addiction module antitoxin; addiction module antitoxin 836481..836693 Jonesia denitrificans DSM 20603 8379962 YP_003160745.1 CDS Jden_0780 NC_013174.1 836785 837402 D PFAM: protein of unknown function DUF1648; hypothetical protein 836785..837402 Jonesia denitrificans DSM 20603 8379963 YP_003160746.1 CDS Jden_0781 NC_013174.1 837593 838216 D KEGG: cvi:CV_0278 hypothetical protein; hypothetical protein 837593..838216 Jonesia denitrificans DSM 20603 8379964 YP_003160747.1 CDS Jden_0782 NC_013174.1 838213 838686 D KEGG: ajs:Ajs_3140 putative protein-S- isoprenylcysteine methyltransferase-like protein; putative protein-S-isoprenylcysteine methyltransferase-like protein 838213..838686 Jonesia denitrificans DSM 20603 8379965 YP_003160748.1 CDS Jden_0783 NC_013174.1 838859 839392 D hypothetical protein 838859..839392 Jonesia denitrificans DSM 20603 8379966 YP_003160749.1 CDS Jden_0784 NC_013174.1 839530 840591 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: abb:ABBFA_001791 sorbitol dehydrogenase; Alcohol dehydrogenase zinc-binding domain-containing protein 839530..840591 Jonesia denitrificans DSM 20603 8379967 YP_003160750.1 CDS Jden_0785 NC_013174.1 840976 842778 D PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 840976..842778 Jonesia denitrificans DSM 20603 8379968 YP_003160751.1 CDS Jden_0786 NC_013174.1 842975 844492 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_2317 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 842975..844492 Jonesia denitrificans DSM 20603 8379969 YP_003160752.1 CDS Jden_0787 NC_013174.1 844585 845544 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 844585..845544 Jonesia denitrificans DSM 20603 8379970 YP_003160753.1 CDS Jden_0788 NC_013174.1 845544 847274 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; ABC transporter 845544..847274 Jonesia denitrificans DSM 20603 8379971 YP_003160754.1 CDS Jden_0789 NC_013174.1 847305 849695 D KEGG: predicted protein; hypothetical protein 847305..849695 Jonesia denitrificans DSM 20603 8379972 YP_003160755.1 CDS Jden_0790 NC_013174.1 849703 852003 D KEGG: bxe:Bxe_B0776 putative membrane glycoprotein; hypothetical protein 849703..852003 Jonesia denitrificans DSM 20603 8379973 YP_003160756.1 CDS Jden_0791 NC_013174.1 852021 852956 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_2609 ABC transporter related; ABC transporter 852021..852956 Jonesia denitrificans DSM 20603 8379974 YP_003160757.1 CDS Jden_0792 NC_013174.1 852953 853591 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein; ABC transporter 852953..853591 Jonesia denitrificans DSM 20603 8379975 YP_003160758.1 CDS Jden_0793 NC_013174.1 853726 855633 D TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: aba:Acid345_4404 GTP-binding protein TypA; GTP-binding protein TypA 853726..855633 Jonesia denitrificans DSM 20603 8379976 YP_003160759.1 CDS Jden_0794 NC_013174.1 855650 856645 D PFAM: LmbE family protein; KEGG: xcb:XC_2586 hypothetical protein; LmbE family protein 855650..856645 Jonesia denitrificans DSM 20603 8379977 YP_003160760.1 CDS Jden_0795 NC_013174.1 856662 857054 D hypothetical protein 856662..857054 Jonesia denitrificans DSM 20603 8379978 YP_003160761.1 CDS Jden_0796 NC_013174.1 857130 859673 D PFAM: VanW family protein; KEGG: trans-sialidase; VanW family protein 857130..859673 Jonesia denitrificans DSM 20603 8379979 YP_003160762.1 CDS Jden_0797 NC_013174.1 859677 860543 D hypothetical protein 859677..860543 Jonesia denitrificans DSM 20603 8379980 YP_003160763.1 CDS Jden_0798 NC_013174.1 860565 861479 D PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: azo:azo1068 chorismate mutase/prephenate dehydratase; Prephenate dehydratase 860565..861479 Jonesia denitrificans DSM 20603 8379981 YP_003160764.1 CDS Jden_0799 NC_013174.1 861476 862465 D PFAM: Prephenate dehydrogenase; KEGG: pst:PSPTO_1748 prephenate dehydrogenase/3- phosphoshikimate 1-carboxyvinyltransferase family protein; prephenate dehydrogenase 861476..862465 Jonesia denitrificans DSM 20603 8379982 YP_003160765.1 CDS Jden_0800 NC_013174.1 862462 862770 R hypothetical protein complement(862462..862770) Jonesia denitrificans DSM 20603 8379983 YP_003160766.1 CDS Jden_0801 NC_013174.1 862909 863226 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vei:Veis_3502 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 862909..863226 Jonesia denitrificans DSM 20603 8379984 YP_003160767.1 CDS Jden_0802 NC_013174.1 863233 864411 D PFAM: aminotransferase class I and II; KEGG: reh:H16_A2065 aminotransferase, class I and II; class I and II aminotransferase 863233..864411 Jonesia denitrificans DSM 20603 8379985 YP_003160768.1 CDS Jden_0803 NC_013174.1 864652 865974 D KEGG: scl:sce8281 hypothetical protein; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 864652..865974 Jonesia denitrificans DSM 20603 8379986 YP_003160769.1 CDS Jden_0804 NC_013174.1 866062 867018 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pat:Patl_3394 putative 2,3,4, 5- tetrahydropyridine-2-carboxylate N-succinyltransferase; transferase hexapeptide repeat containing protein complement(866062..867018) Jonesia denitrificans DSM 20603 8379987 YP_003160770.1 CDS Jden_0805 NC_013174.1 867140 868255 D TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ank:AnaeK_3891 peptidase M20; succinyl-diaminopimelate desuccinylase 867140..868255 Jonesia denitrificans DSM 20603 8379988 YP_003160771.1 CDS Jden_0806 NC_013174.1 868316 869119 D PFAM: conserved hypothetical protein; KEGG: hypothetical protein; hypothetical protein 868316..869119 Jonesia denitrificans DSM 20603 8379989 YP_003160772.1 CDS Jden_0807 NC_013174.1 869205 870071 D KEGG: bcy:Bcer98_0067 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 869205..870071 Jonesia denitrificans DSM 20603 8379990 YP_003160773.1 CDS Jden_0808 NC_013174.1 870201 870368 D hypothetical protein 870201..870368 Jonesia denitrificans DSM 20603 8379991 YP_003160774.1 CDS Jden_0809 NC_013174.1 870372 871985 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: hne:HNE_2244 cytosol aminopeptidase; leucyl aminopeptidase 870372..871985 Jonesia denitrificans DSM 20603 8379992 YP_003160775.1 CDS Jden_0810 NC_013174.1 872031 872666 R PFAM: Methyltransferase type 11; O- methyltransferase family 3; KEGG: bur:Bcep18194_B2421 O-methyltransferase family protein; type 11 methyltransferase complement(872031..872666) Jonesia denitrificans DSM 20603 8379993 YP_003160776.1 CDS Jden_0811 NC_013174.1 872780 873313 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sus:Acid_0793 ECF subfamily RNA polymerase sigma-24 factor; ECF subfamily RNA polymerase sigma-24 subunit 872780..873313 Jonesia denitrificans DSM 20603 8379994 YP_003160777.1 CDS Jden_0812 NC_013174.1 873310 874248 D hypothetical protein 873310..874248 Jonesia denitrificans DSM 20603 8379995 YP_003160778.1 CDS Jden_0813 NC_013174.1 874245 875702 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: acr:Acry_1317 protease Do; peptidase S1 and S6 chymotrypsin/Hap 874245..875702 Jonesia denitrificans DSM 20603 8379996 YP_003160779.1 CDS Jden_0814 NC_013174.1 875748 876173 D KEGG: pfl:PFL_0421 sec-independent translocase; sec-independent translocase 875748..876173 Jonesia denitrificans DSM 20603 8379997 YP_003160780.1 CDS Jden_0815 NC_013174.1 876262 877287 D KEGG: eca:ECA4087 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 876262..877287 Jonesia denitrificans DSM 20603 8379998 YP_003160781.1 CDS Jden_0816 NC_013174.1 877290 877829 D PFAM: Phosphoesterase HXTX; KEGG: bcy:Bcer98_0945 hypothetical protein; phosphoesterase HXTX 877290..877829 Jonesia denitrificans DSM 20603 8379999 YP_003160782.1 CDS Jden_0817 NC_013174.1 877911 878858 D PFAM: ribonuclease BN; KEGG: mpt:Mpe_A3481 ribonuclease BN family protein; ribonuclease BN 877911..878858 Jonesia denitrificans DSM 20603 8380000 YP_003160783.1 CDS Jden_0818 NC_013174.1 878982 879740 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bav:BAV1185 succinate dehydrogenase iron- sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(878982..879740) Jonesia denitrificans DSM 20603 8380001 YP_003160784.1 CDS Jden_0819 NC_013174.1 879740 881569 R KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit complement(879740..881569) Jonesia denitrificans DSM 20603 8380002 YP_003160785.1 CDS Jden_0820 NC_013174.1 881617 882057 R KEGG: eta:ETA_23070 succinate dehydrogenase hydrophobic membrane anchor protein; Succinate dehydrogenase hydrophobic anchor subunit-like protein complement(881617..882057) Jonesia denitrificans DSM 20603 8380003 YP_003160786.1 CDS Jden_0821 NC_013174.1 882057 882437 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: har:HEAR3329 putative succinate dehydrogenase/fumarate reductase cytochrome b-556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(882057..882437) Jonesia denitrificans DSM 20603 8380004 YP_003160787.1 CDS Jden_0822 NC_013174.1 882687 883844 D PFAM: Nucleotidyl transferase; KEGG: hypothetical protein; mannose-1-phosphate guanylyltransferase 882687..883844 Jonesia denitrificans DSM 20603 8380005 YP_003160788.1 CDS Jden_0823 NC_013174.1 883909 885108 D KEGG: nis:NIS_1768 N-acetyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 883909..885108 Jonesia denitrificans DSM 20603 8380006 YP_003160789.1 CDS Jden_0824 NC_013174.1 885412 886488 D PFAM: basic membrane lipoprotein; KEGG: scl:sce7758 Bmp family lipoprotein; basic membrane lipoprotein 885412..886488 Jonesia denitrificans DSM 20603 8380007 YP_003160790.1 CDS Jden_0825 NC_013174.1 886630 888213 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein; ABC transporter 886630..888213 Jonesia denitrificans DSM 20603 8380008 YP_003160791.1 CDS Jden_0826 NC_013174.1 888210 889454 D PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; inner-membrane translocator 888210..889454 Jonesia denitrificans DSM 20603 8380009 YP_003160792.1 CDS Jden_0827 NC_013174.1 889451 890740 D PFAM: inner-membrane translocator; KEGG: scl:sce7756 uncharacterized ABC-type transport system,permease component; inner-membrane translocator 889451..890740 Jonesia denitrificans DSM 20603 8380010 YP_003160793.1 CDS Jden_0828 NC_013174.1 890863 891297 D TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cps:CPS_1969 cytidine deaminase; cytidine deaminase 890863..891297 Jonesia denitrificans DSM 20603 8380011 YP_003160794.1 CDS Jden_0829 NC_013174.1 891294 892589 D KEGG: acp:A2cp1_0651 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like; pyrimidine-nucleoside phosphorylase 891294..892589 Jonesia denitrificans DSM 20603 8380012 YP_003160795.1 CDS Jden_0830 NC_013174.1 892660 893508 D hypothetical protein 892660..893508 Jonesia denitrificans DSM 20603 8380013 YP_003160796.1 CDS Jden_0831 NC_013174.1 893505 894587 D KEGG: acp:A2cp1_0116 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 893505..894587 Jonesia denitrificans DSM 20603 8380014 YP_003160797.1 CDS Jden_0832 NC_013174.1 894592 895302 D KEGG: bha:BH1352 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 894592..895302 Jonesia denitrificans DSM 20603 8380015 YP_003160798.1 CDS Jden_0833 NC_013174.1 895387 896190 D PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: rpi:Rpic_3953 FAD-binding 9 siderophore- interacting domain protein; FAD-binding 9 siderophore-interacting domain-containing protein 895387..896190 Jonesia denitrificans DSM 20603 8380016 YP_003160799.1 CDS Jden_0834 NC_013174.1 896299 898101 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: apj:APJL_0584 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(896299..898101) Jonesia denitrificans DSM 20603 8380017 YP_003160800.1 CDS Jden_0835 NC_013174.1 898113 898949 R TIGRFAM: purine nucleotide phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: scl:sce5862 hypothetical protein; purine nucleotide phosphorylase complement(898113..898949) Jonesia denitrificans DSM 20603 8380018 YP_003160801.1 CDS Jden_0836 NC_013174.1 899165 900640 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: swi:Swit_5151 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 899165..900640 Jonesia denitrificans DSM 20603 8380019 YP_003160802.1 CDS Jden_0837 NC_013174.1 900644 901174 R PFAM: NUDIX hydrolase; KEGG: bca:BCE_3110 MutT/NUDIX family protein; NUDIX hydrolase complement(900644..901174) Jonesia denitrificans DSM 20603 8380020 YP_003160803.1 CDS Jden_0838 NC_013174.1 901369 902475 D PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase 901369..902475 Jonesia denitrificans DSM 20603 8380021 YP_003160804.1 CDS Jden_0839 NC_013174.1 902472 903686 R KEGG: nme:NMB0065 hypothetical protein; hypothetical protein complement(902472..903686) Jonesia denitrificans DSM 20603 8380022 YP_003160805.1 CDS Jden_0840 NC_013174.1 903683 904681 R hypothetical protein complement(903683..904681) Jonesia denitrificans DSM 20603 8380023 YP_003160806.1 CDS Jden_0841 NC_013174.1 904678 906045 R hypothetical protein complement(904678..906045) Jonesia denitrificans DSM 20603 8380024 YP_003160807.1 CDS Jden_0842 NC_013174.1 906038 907081 R PFAM: glycosyl transferase family 2; KEGG: bcb:BCB4264_A5552 beta-1,3-N- acetylglucosaminyltransferase; family 2 glycosyl transferase complement(906038..907081) Jonesia denitrificans DSM 20603 8380025 YP_003160808.1 CDS Jden_0843 NC_013174.1 907084 907974 R PFAM: N-acetylneuraminic acid synthase domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase; N-acetylneuraminate synthase complement(907084..907974) Jonesia denitrificans DSM 20603 8380026 YP_003160809.1 CDS Jden_0844 NC_013174.1 907976 909247 R PFAM: acylneuraminate cytidylyltransferase; KEGG: pca:Pcar_1278 CMP-N-acetylneuraminic acid synthetase; acylneuraminate cytidylyltransferase complement(907976..909247) Jonesia denitrificans DSM 20603 8380027 YP_003160810.1 CDS Jden_0845 NC_013174.1 909355 911142 R PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2; Carbamoyl-phosphate synthase L chain ATP- binding complement(909355..911142) Jonesia denitrificans DSM 20603 8380028 YP_003160811.1 CDS Jden_0846 NC_013174.1 911298 911954 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: similar to GI12342; maf protein complement(911298..911954) Jonesia denitrificans DSM 20603 8380029 YP_003160812.1 CDS Jden_0847 NC_013174.1 911957 913660 R PFAM: protein of unknown function DUF885; KEGG: scl:sce1630 hypothetical protein; hypothetical protein complement(911957..913660) Jonesia denitrificans DSM 20603 8380030 YP_003160813.1 CDS Jden_0848 NC_013174.1 913826 914488 D PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: GE11817 gene product from transcript GE11817- RA; vitamin K epoxide reductase 913826..914488 Jonesia denitrificans DSM 20603 8380031 YP_003160814.1 CDS Jden_0849 NC_013174.1 914559 915671 D PFAM: acyltransferase 3; KEGG: mxa:MXAN_6814 acyltransferase family protein; acyltransferase 3 914559..915671 Jonesia denitrificans DSM 20603 8380032 YP_003160815.1 CDS Jden_0850 NC_013174.1 915807 917387 R PFAM: carboxyl transferase; KEGG: dol:Dole_0077 carboxyl transferase; carboxyl transferase complement(915807..917387) Jonesia denitrificans DSM 20603 8380033 YP_003160816.1 CDS Jden_0851 NC_013174.1 917522 918358 D TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: afw:Anae109_1479 biotin--acetyl-CoA- carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 917522..918358 Jonesia denitrificans DSM 20603 8380034 YP_003160817.1 CDS Jden_0852 NC_013174.1 918446 919498 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_0533 adenylate/guanylate cyclase; adenylate/guanylate cyclase 918446..919498 Jonesia denitrificans DSM 20603 8380035 YP_003160818.1 CDS Jden_0853 NC_013174.1 919461 920273 R PFAM: protein of unknown function DUF159; KEGG: tmz:Tmz1t_2360 protein of unknown function DUF159; hypothetical protein complement(919461..920273) Jonesia denitrificans DSM 20603 8380036 YP_003160819.1 CDS Jden_0854 NC_013174.1 920288 920935 R KEGG: mxa:MXAN_3395 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(920288..920935) Jonesia denitrificans DSM 20603 8380037 YP_003160820.1 CDS Jden_0855 NC_013174.1 921027 922334 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_7495 drug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 921027..922334 Jonesia denitrificans DSM 20603 8380038 YP_003160821.1 CDS Jden_0856 NC_013174.1 922511 923746 D PFAM: type II secretion system protein E; KEGG: tcx:Tcr_1725 type II secretion system protein E; type II secretion system protein E 922511..923746 Jonesia denitrificans DSM 20603 8380039 YP_003160822.1 CDS Jden_0857 NC_013174.1 923737 924591 D PFAM: type II secretion system protein; KEGG: bpt:Bpet2079 hypothetical protein; type II secretion system protein 923737..924591 Jonesia denitrificans DSM 20603 8380040 YP_003160823.1 CDS Jden_0858 NC_013174.1 924588 925523 D PFAM: type II secretion system protein; KEGG: type II secretion system protein; type II secretion system protein 924588..925523 Jonesia denitrificans DSM 20603 8380041 YP_003160824.1 CDS Jden_0859 NC_013174.1 925573 925851 D hypothetical protein 925573..925851 Jonesia denitrificans DSM 20603 8380042 YP_003160825.1 CDS Jden_0860 NC_013174.1 925868 926260 D PFAM: TadE family protein; TadE family protein 925868..926260 Jonesia denitrificans DSM 20603 8380043 YP_003160826.1 CDS Jden_0861 NC_013174.1 926266 926703 D PFAM: TadE family protein; TadE family protein 926266..926703 Jonesia denitrificans DSM 20603 8380044 YP_003160827.1 CDS Jden_0862 NC_013174.1 926703 927182 D hypothetical protein 926703..927182 Jonesia denitrificans DSM 20603 8380045 YP_003160828.1 CDS Jden_0863 NC_013174.1 927256 928365 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: glo:Glov_2735 hypothetical protein; peptide chain release factor 2 927256..928365 Jonesia denitrificans DSM 20603 8380046 YP_003160829.1 CDS Jden_0864 NC_013174.1 928447 929202 D KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 928447..929202 Jonesia denitrificans DSM 20603 8380047 YP_003160830.1 CDS Jden_0865 NC_013174.1 929214 930128 D PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein; cell division protein FtsX 929214..930128 Jonesia denitrificans DSM 20603 8380048 YP_003160831.1 CDS Jden_0866 NC_013174.1 930131 931600 D PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein; peptidase M23 930131..931600 Jonesia denitrificans DSM 20603 8380049 YP_003160832.1 CDS Jden_0867 NC_013174.1 931738 932268 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: bcy:Bcer98_3672 SsrA-binding protein; SsrA-binding protein 931738..932268 Jonesia denitrificans DSM 20603 8380050 YP_003160833.1 CDS Jden_0868 NC_013174.1 932904 933329 R KEGG: hha:Hhal_1936 molybdopterin oxidoreductase Fe4s4 region; hypothetical protein complement(932904..933329) Jonesia denitrificans DSM 20603 8381753 YP_003160834.1 CDS Jden_0869 NC_013174.1 933378 933659 R hypothetical protein complement(933378..933659) Jonesia denitrificans DSM 20603 8380052 YP_003160835.1 CDS Jden_0870 NC_013174.1 933656 934420 R hypothetical protein complement(933656..934420) Jonesia denitrificans DSM 20603 8380053 YP_003160836.1 CDS Jden_0871 NC_013174.1 934536 935171 R hypothetical protein complement(934536..935171) Jonesia denitrificans DSM 20603 8380054 YP_003160837.1 CDS Jden_0872 NC_013174.1 935335 935706 R hypothetical protein complement(935335..935706) Jonesia denitrificans DSM 20603 8380055 YP_003160838.1 CDS Jden_0873 NC_013174.1 935897 936538 R KEGG: Tash(AT)-like protein; hypothetical protein complement(935897..936538) Jonesia denitrificans DSM 20603 8380056 YP_003160839.1 CDS Jden_0874 NC_013174.1 936682 937506 R hypothetical protein complement(936682..937506) Jonesia denitrificans DSM 20603 8380057 YP_003160840.1 CDS Jden_0875 NC_013174.1 937503 938153 R KEGG: oan:Oant_2246 hypothetical protein; hypothetical protein complement(937503..938153) Jonesia denitrificans DSM 20603 8380058 YP_003160841.1 CDS Jden_0876 NC_013174.1 938397 939209 R KEGG: bcz:BCZK3778 hypothetical protein; hypothetical protein complement(938397..939209) Jonesia denitrificans DSM 20603 8380059 YP_003160842.1 CDS Jden_0877 NC_013174.1 939382 939864 D hypothetical protein 939382..939864 Jonesia denitrificans DSM 20603 8380060 YP_003160843.1 CDS Jden_0878 NC_013174.1 939881 941476 R KEGG: mxa:MXAN_1583 hypothetical protein; hypothetical protein complement(939881..941476) Jonesia denitrificans DSM 20603 8380061 YP_003160844.1 CDS Jden_0879 NC_013174.1 941522 941908 R PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: mfa:Mfla_1265 RNA-binding S4; RNA-binding S4 domain-containing protein complement(941522..941908) Jonesia denitrificans DSM 20603 8380062 YP_003160845.1 CDS Jden_0880 NC_013174.1 942018 942365 D hypothetical protein 942018..942365 Jonesia denitrificans DSM 20603 8380063 YP_003160846.1 CDS Jden_0881 NC_013174.1 942362 944227 D PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: sde:Sde_1925 GGDEF family protein; type III restriction protein res subunit 942362..944227 Jonesia denitrificans DSM 20603 8380064 YP_003160847.1 CDS Jden_0882 NC_013174.1 944304 945635 R TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: scl:sce3712 putative nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(944304..945635) Jonesia denitrificans DSM 20603 8380065 YP_003160848.1 CDS Jden_0883 NC_013174.1 945679 945978 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pen:PSEEN2206 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 945679..945978 Jonesia denitrificans DSM 20603 8380066 YP_003160849.1 CDS Jden_0884 NC_013174.1 945981 946676 D hypothetical protein 945981..946676 Jonesia denitrificans DSM 20603 8380067 YP_003160850.1 CDS Jden_0885 NC_013174.1 946812 947618 D KEGG: pca:Pcar_2724 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 946812..947618 Jonesia denitrificans DSM 20603 8380068 YP_003160851.1 CDS Jden_0886 NC_013174.1 947615 948418 D KEGG: bha:BH3002 hypothetical protein; hypothetical protein 947615..948418 Jonesia denitrificans DSM 20603 8380069 YP_003160852.1 CDS Jden_0887 NC_013174.1 948450 949082 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dds:Ddes_1892 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 948450..949082 Jonesia denitrificans DSM 20603 8380070 YP_003160853.1 CDS Jden_0888 NC_013174.1 949035 949424 R KEGG: hypothetical protein; hypothetical protein complement(949035..949424) Jonesia denitrificans DSM 20603 8380071 YP_003160854.1 CDS Jden_0889 NC_013174.1 949463 951127 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_00281 ABC transporter ATPase; ABC transporter 949463..951127 Jonesia denitrificans DSM 20603 8380072 YP_003160855.1 CDS Jden_0890 NC_013174.1 951129 951704 R hypothetical protein complement(951129..951704) Jonesia denitrificans DSM 20603 8380073 YP_003160856.1 CDS Jden_0891 NC_013174.1 951916 952296 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tmz:Tmz1t_0609 thioredoxin; thioredoxin 951916..952296 Jonesia denitrificans DSM 20603 8380074 YP_003160857.1 CDS Jden_0892 NC_013174.1 952559 953155 D hypothetical protein 952559..953155 Jonesia denitrificans DSM 20603 8380075 YP_003160858.1 CDS Jden_0893 NC_013174.1 953191 953985 R KEGG: tgr:Tgr7_3237 tRNA (guanine-N(7)-)- methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(953191..953985) Jonesia denitrificans DSM 20603 8380076 YP_003160859.1 CDS Jden_0894 NC_013174.1 954098 954712 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: msl:Msil_0146 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 954098..954712 Jonesia denitrificans DSM 20603 8380077 YP_003160860.1 CDS Jden_0896 NC_013174.1 954844 955140 R hypothetical protein complement(954844..955140) Jonesia denitrificans DSM 20603 8381754 YP_003160861.1 CDS Jden_0897 NC_013174.1 955464 955937 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sus:Acid_7719 redoxin domain-containing protein; alkyl hydroperoxide reductase complement(955464..955937) Jonesia denitrificans DSM 20603 8381755 YP_003160862.1 CDS Jden_0898 NC_013174.1 955956 956363 D PFAM: chaperonin Cpn10; KEGG: rce:RC1_2594 chaperonin GroS, putative; chaperonin Cpn10 955956..956363 Jonesia denitrificans DSM 20603 8380080 YP_003160863.1 CDS Jden_0899 NC_013174.1 956656 956886 D hypothetical protein 956656..956886 Jonesia denitrificans DSM 20603 8380081 YP_003160864.1 CDS Jden_0900 NC_013174.1 957452 957631 D hypothetical protein 957452..957631 Jonesia denitrificans DSM 20603 8381757 YP_003160865.1 CDS Jden_0901 NC_013174.1 957655 957792 R hypothetical protein complement(957655..957792) Jonesia denitrificans DSM 20603 8380083 YP_003160866.1 CDS Jden_0902 NC_013174.1 957807 958370 R PFAM: Ferritin Dps family protein; KEGG: hdu:HD0068 fine tangled pili major subunit; ferritin Dps family protein complement(957807..958370) Jonesia denitrificans DSM 20603 8380084 YP_003160867.1 CDS Jden_0903 NC_013174.1 958500 959120 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: mmw:Mmwyl1_3395 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(958500..959120) Jonesia denitrificans DSM 20603 8380085 YP_003160868.1 CDS Jden_0904 NC_013174.1 959194 960096 D KEGG: mxa:MXAN_0885 hypothetical protein; hypothetical protein 959194..960096 Jonesia denitrificans DSM 20603 8380086 YP_003160869.1 CDS Jden_0905 NC_013174.1 960275 960802 D PFAM: ribonuclease H; KEGG: bbr:BB4278 ribonuclease H; ribonuclease H 960275..960802 Jonesia denitrificans DSM 20603 8381758 YP_003160870.1 CDS Jden_0906 NC_013174.1 960812 961579 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: ank:AnaeK_1955 methionine aminopeptidase, type I; methionine aminopeptidase 960812..961579 Jonesia denitrificans DSM 20603 8380088 YP_003160871.1 CDS Jden_0907 NC_013174.1 961576 962244 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: probable oligoribonuclease, mitochondrial precursor; K01175; Exonuclease RNase T and DNA polymerase III 961576..962244 Jonesia denitrificans DSM 20603 8380089 YP_003160872.1 CDS Jden_0911 NC_013174.1 963645 963881 D PFAM: Heavy metal transport/detoxification protein; KEGG: pde:Pden_3294 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 963645..963881 Jonesia denitrificans DSM 20603 8381762 YP_003160873.1 CDS Jden_0912 NC_013174.1 963933 965972 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: oca:OCAR_4884 cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase 963933..965972 Jonesia denitrificans DSM 20603 8380091 YP_003160874.1 CDS Jden_0913 NC_013174.1 965988 966113 D hypothetical protein 965988..966113 Jonesia denitrificans DSM 20603 8380092 YP_003160875.1 CDS Jden_0914 NC_013174.1 966455 967360 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain-containing protein 966455..967360 Jonesia denitrificans DSM 20603 8380093 YP_003160876.1 CDS Jden_0915 NC_013174.1 967357 968025 D PFAM: Methyltransferase type 12; KEGG: cak:Caul_0872 methyltransferase type 12; type 12 methyltransferase 967357..968025 Jonesia denitrificans DSM 20603 8380094 YP_003160877.1 CDS Jden_0916 NC_013174.1 968089 968817 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: sat:SYN_00248 cyclic nucleotide-binding domain-containing protein; CarD family transcriptional regulator 968089..968817 Jonesia denitrificans DSM 20603 8380095 YP_003160878.1 CDS Jden_0917 NC_013174.1 968828 970753 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMa1163 cation transport P-type ATPase; heavy metal translocating P-type ATPase 968828..970753 Jonesia denitrificans DSM 20603 8380096 YP_003160879.1 CDS Jden_0918 NC_013174.1 970776 971087 R PFAM: protein of unknown function DUF156; KEGG: bsu:BSU33520 hypothetical protein; hypothetical protein complement(970776..971087) Jonesia denitrificans DSM 20603 8380097 YP_003160880.1 CDS Jden_0919 NC_013174.1 971112 973205 R TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr_0943 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(971112..973205) Jonesia denitrificans DSM 20603 8380098 YP_003160881.1 CDS Jden_0922 NC_013174.1 973983 974519 R hypothetical protein complement(973983..974519) Jonesia denitrificans DSM 20603 8381764 YP_003160882.1 CDS Jden_0923 NC_013174.1 974745 975398 R hypothetical protein complement(974745..975398) Jonesia denitrificans DSM 20603 8380100 YP_003160883.1 CDS Jden_0924 NC_013174.1 975455 976195 D PFAM: helix-turn-helix HxlR type; KEGG: bpa:BPP3401 putative transcriptional regulator; HxlR family transcriptional regulator 975455..976195 Jonesia denitrificans DSM 20603 8380101 YP_003160884.1 CDS Jden_0925 NC_013174.1 976192 976683 D PFAM: Camphor resistance CrcB protein; KEGG: nar:Saro_2836 camphor resistance protein CrcB; camphor resistance protein CrcB 976192..976683 Jonesia denitrificans DSM 20603 8380102 YP_003160885.1 CDS Jden_0926 NC_013174.1 976680 977069 D PFAM: Camphor resistance CrcB protein; KEGG: rsh:Rsph17029_0390 CrcB protein; camphor resistance protein CrcB 976680..977069 Jonesia denitrificans DSM 20603 8380103 YP_003160886.1 CDS Jden_0927 NC_013174.1 977124 977315 D hypothetical protein 977124..977315 Jonesia denitrificans DSM 20603 8380104 YP_003160887.1 CDS Jden_0928 NC_013174.1 977452 979074 D KEGG: hha:Hhal_1736 putative ABC transporter; hypothetical protein 977452..979074 Jonesia denitrificans DSM 20603 8380105 YP_003160888.1 CDS Jden_0929 NC_013174.1 979157 980713 D KEGG: hha:Hhal_1735 putative ABC transporter; hypothetical protein 979157..980713 Jonesia denitrificans DSM 20603 8380106 YP_003160889.1 CDS Jden_0930 NC_013174.1 980776 981309 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: azo:azo3385 single-strand DNA-binding protein; single-strand binding protein 980776..981309 Jonesia denitrificans DSM 20603 8380107 YP_003160890.1 CDS Jden_0931 NC_013174.1 981436 983118 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2098 putative ABC transporter ATP- binding protein; ABC transporter 981436..983118 Jonesia denitrificans DSM 20603 8380108 YP_003160891.1 CDS Jden_0932 NC_013174.1 983283 985235 D KEGG: hha:Hhal_1736 putative ABC transporter; hypothetical protein 983283..985235 Jonesia denitrificans DSM 20603 8380109 YP_003160892.1 CDS Jden_0933 NC_013174.1 985232 986968 D KEGG: hha:Hhal_1735 putative ABC transporter; hypothetical protein 985232..986968 Jonesia denitrificans DSM 20603 8380110 YP_003160893.1 CDS Jden_0934 NC_013174.1 986928 987473 D PFAM: thioesterase superfamily protein; KEGG: xca:xccb100_3191 putative thioesterase; thioesterase superfamily protein 986928..987473 Jonesia denitrificans DSM 20603 8380111 YP_003160894.1 CDS Jden_0935 NC_013174.1 987479 988450 R PFAM: acyl-CoA thioesterase; KEGG: atc:AGR_C_4997 acyl-CoA thioesterase II; acyl-CoA thioesterase complement(987479..988450) Jonesia denitrificans DSM 20603 8380112 YP_003160895.1 CDS Jden_0936 NC_013174.1 988507 988914 R PFAM: globin; KEGG: bha:BH2854 hypothetical protein; globin complement(988507..988914) Jonesia denitrificans DSM 20603 8380113 YP_003160896.1 CDS Jden_0937 NC_013174.1 988940 990634 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pag:PLES_14711 putative phosphotransferase system enzyme I; phosphoenolpyruvate-protein phosphotransferase complement(988940..990634) Jonesia denitrificans DSM 20603 8380114 YP_003160897.1 CDS Jden_0938 NC_013174.1 990801 991046 D PFAM: phosphotransferase system PTS EIIB protein; KEGG: bcy:Bcer98_2749 PTS system, glucose-specific IIABC component; PTS system transporter subunit IIB 990801..991046 Jonesia denitrificans DSM 20603 8380115 YP_003160898.1 CDS Jden_0939 NC_013174.1 991055 991543 D TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: kpe:KPK_1590 PTS system, beta-glucoside- specific EIIBCA component; PTS system glucose subfamily transporter subunit IIA 991055..991543 Jonesia denitrificans DSM 20603 8380116 YP_003160899.1 CDS Jden_0940 NC_013174.1 991530 992411 R PFAM: MscS Mechanosensitive ion channel; KEGG: aba:Acid345_1916 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(991530..992411) Jonesia denitrificans DSM 20603 8380117 YP_003160900.1 CDS Jden_0941 NC_013174.1 992522 994672 D KEGG: rce:RC1_2119 probable maltokinase; 4-alpha-glucanotransferase 992522..994672 Jonesia denitrificans DSM 20603 8380118 YP_003160901.1 CDS Jden_0942 NC_013174.1 994661 995716 R KEGG: ypm:YP_1836 hypothetical protein; hypothetical protein complement(994661..995716) Jonesia denitrificans DSM 20603 8380119 YP_003160902.1 CDS Jden_0943 NC_013174.1 995788 998337 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: scl:sce2331 membrane alanyl aminopeptidase; aminopeptidase N complement(995788..998337) Jonesia denitrificans DSM 20603 8380120 YP_003160903.1 CDS Jden_0944 NC_013174.1 998491 999102 D hypothetical protein 998491..999102 Jonesia denitrificans DSM 20603 8380121 YP_003160904.1 CDS Jden_0945 NC_013174.1 999197 999811 D KEGG: hypothetical protein; hypothetical protein 999197..999811 Jonesia denitrificans DSM 20603 8380122 YP_003160905.1 CDS Jden_0946 NC_013174.1 999887 1001884 R PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: cps:CPS_1170 metalloendopeptidase PepO; Endothelin-converting enzyme 1 complement(999887..1001884) Jonesia denitrificans DSM 20603 8380123 YP_003160906.1 CDS Jden_0947 NC_013174.1 1001958 1002410 D TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sfu:Sfum_1376 sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase 1001958..1002410 Jonesia denitrificans DSM 20603 8380124 YP_003160907.1 CDS Jden_0948 NC_013174.1 1002411 1003442 D PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: hypothetical protein; DNA glycosylase/AP lyase 1002411..1003442 Jonesia denitrificans DSM 20603 8380125 YP_003160908.1 CDS Jden_0949 NC_013174.1 1003425 1004750 R KEGG: scl:sce0310 acetyltransferase; acetyltransferase complement(1003425..1004750) Jonesia denitrificans DSM 20603 8380126 YP_003160909.1 CDS Jden_0950 NC_013174.1 1004791 1005909 R PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2543 5,10- methylenetetrahydromethanopterin reductase; luciferase-like monooxygenase complement(1004791..1005909) Jonesia denitrificans DSM 20603 8380127 YP_003160910.1 CDS Jden_0951 NC_013174.1 1006020 1006595 R TIGRFAM: serine O-acetyltransferase; KEGG: tbd:Tbd_1162 serine O-acetyltransferase; serine O-acetyltransferase complement(1006020..1006595) Jonesia denitrificans DSM 20603 8380128 YP_003160911.1 CDS Jden_0952 NC_013174.1 1006726 1007661 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: acr:Acry_2560 cysteine synthase A; cysteine synthase complement(1006726..1007661) Jonesia denitrificans DSM 20603 8380129 YP_003160912.1 CDS Jden_0953 NC_013174.1 1008346 1008447 R hypothetical protein complement(1008346..1008447) Jonesia denitrificans DSM 20603 8381765 YP_003160913.1 CDS Jden_0954 NC_013174.1 1008503 1009870 D TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: bha:BH3053 trigger factor; trigger factor 1008503..1009870 Jonesia denitrificans DSM 20603 8380131 YP_003160914.1 CDS Jden_0955 NC_013174.1 1010054 1010677 D PFAM: peptidase S14 ClpP; KEGG: spe:Spro_1095 ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase Clp 1010054..1010677 Jonesia denitrificans DSM 20603 8380132 YP_003160915.1 CDS Jden_0956 NC_013174.1 1010706 1011413 D PFAM: peptidase S14 ClpP; KEGG: mgm:Mmc1_3642 ATP-dependent Clp protease proteolytic subunit ClpP; endopeptidase Clp 1010706..1011413 Jonesia denitrificans DSM 20603 8380133 YP_003160916.1 CDS Jden_0957 NC_013174.1 1011555 1012832 D KEGG: ban:BA4704 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 1011555..1012832 Jonesia denitrificans DSM 20603 8380134 YP_003160917.1 CDS Jden_0958 NC_013174.1 1012838 1013197 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: bcs:BCAN_A1863 chorismate mutase; chorismate mutase 1012838..1013197 Jonesia denitrificans DSM 20603 8380135 YP_003160918.1 CDS Jden_0959 NC_013174.1 1013286 1014068 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0685 ABC transporter related; ABC transporter complement(1013286..1014068) Jonesia denitrificans DSM 20603 8380136 YP_003160919.1 CDS Jden_0960 NC_013174.1 1014065 1014904 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0684 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1014065..1014904) Jonesia denitrificans DSM 20603 8380137 YP_003160920.1 CDS Jden_0961 NC_013174.1 1014901 1015677 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: acr:Acry_0683 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1014901..1015677) Jonesia denitrificans DSM 20603 8380138 YP_003160921.1 CDS Jden_0962 NC_013174.1 1015866 1017680 R PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1015866..1017680) Jonesia denitrificans DSM 20603 8380139 YP_003160922.1 CDS Jden_0963 NC_013174.1 1017705 1020410 R KEGG: scl:sce5134 valyl-tRNA synthetase; tRNA synthetase valyl/leucyl anticodon-binding complement(1017705..1020410) Jonesia denitrificans DSM 20603 8380140 YP_003160923.1 CDS Jden_0964 NC_013174.1 1020593 1021408 D TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: bpy:Bphyt_4255 F420-dependent oxidoreductase; F420-dependent oxidoreductase 1020593..1021408 Jonesia denitrificans DSM 20603 8380141 YP_003160924.1 CDS Jden_0965 NC_013174.1 1021432 1022313 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b20058 putative ABC transporter ATP- binding protein; ABC transporter complement(1021432..1022313) Jonesia denitrificans DSM 20603 8380142 YP_003160925.1 CDS Jden_0966 NC_013174.1 1022310 1023419 R PFAM: transport system permease protein; KEGG: rsh:Rsph17029_3037 transport system permease protein; transport system permease complement(1022310..1023419) Jonesia denitrificans DSM 20603 8380143 YP_003160926.1 CDS Jden_0967 NC_013174.1 1023425 1024492 R PFAM: periplasmic binding protein; KEGG: sit:TM1040_2934 periplasmic binding protein; periplasmic binding protein complement(1023425..1024492) Jonesia denitrificans DSM 20603 8380144 YP_003160927.1 CDS Jden_0968 NC_013174.1 1024622 1025437 R KEGG: hypothetical protein; K00286 pyrroline-5- carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(1024622..1025437) Jonesia denitrificans DSM 20603 8380145 YP_003160928.1 CDS Jden_0969 NC_013174.1 1025721 1025987 D hypothetical protein 1025721..1025987 Jonesia denitrificans DSM 20603 8380146 YP_003160929.1 CDS Jden_0970 NC_013174.1 1026351 1029569 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: rfe:RF_0423 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1026351..1029569 Jonesia denitrificans DSM 20603 8380147 YP_003160930.1 CDS Jden_0971 NC_013174.1 1029619 1031010 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1029619..1031010 Jonesia denitrificans DSM 20603 8380148 YP_003160931.1 CDS Jden_0972 NC_013174.1 1031127 1032122 D KEGG: scl:sce2491 Glycerone kinase DAK1 domain- containing protein; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 1031127..1032122 Jonesia denitrificans DSM 20603 8380149 YP_003160932.1 CDS Jden_0973 NC_013174.1 1032143 1032793 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: gdi:GDI0264 putative PTS-dependent dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaL 1032143..1032793 Jonesia denitrificans DSM 20603 8380150 YP_003160933.1 CDS Jden_0974 NC_013174.1 1032783 1033535 D TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; PTS system fructose subfamily IIA component; KEGG: spe:Spro_4270 dihydroxyacetone kinase subunit M; dihydroxyacetone kinase, phosphotransfer subunit 1032783..1033535 Jonesia denitrificans DSM 20603 8380151 YP_003160934.1 CDS Jden_0975 NC_013174.1 1033532 1033963 D hypothetical protein 1033532..1033963 Jonesia denitrificans DSM 20603 8380152 YP_003160935.1 CDS Jden_0976 NC_013174.1 1034007 1034450 D KEGG: hypothetical protein; K00940 nucleoside- diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1034007..1034450 Jonesia denitrificans DSM 20603 8380153 YP_003160936.1 CDS Jden_0977 NC_013174.1 1034451 1037969 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pca:Pcar_2356 chromosome segregation SMC protein; chromosome segregation protein SMC 1034451..1037969 Jonesia denitrificans DSM 20603 8380154 YP_003160937.1 CDS Jden_0978 NC_013174.1 1038033 1038548 D hypothetical protein 1038033..1038548 Jonesia denitrificans DSM 20603 8380155 YP_003160938.1 CDS Jden_0979 NC_013174.1 1038574 1039749 D KEGG: glo:Glov_3496 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1038574..1039749 Jonesia denitrificans DSM 20603 8380156 YP_003160939.1 CDS Jden_0980 NC_013174.1 1039909 1041183 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dal:Dalk_5098 ammonium transporter; ammonium transporter 1039909..1041183 Jonesia denitrificans DSM 20603 8380157 YP_003160940.1 CDS Jden_0981 NC_013174.1 1041180 1041518 D PFAM: nitrogen regulatory protein P-II; KEGG: rce:RC1_1257 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1041180..1041518 Jonesia denitrificans DSM 20603 8380158 YP_003160941.1 CDS Jden_0982 NC_013174.1 1041594 1043309 D KEGG: ank:AnaeK_2164 UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 1041594..1043309 Jonesia denitrificans DSM 20603 8380159 YP_003160942.1 CDS Jden_0983 NC_013174.1 1043443 1045020 D KEGG: glo:Glov_2449 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1043443..1045020 Jonesia denitrificans DSM 20603 8380160 YP_003160943.1 CDS Jden_0984 NC_013174.1 1045022 1046098 D PFAM: amidohydrolase; KEGG: ccs:CCNA_00302 parathion hydrolase; amidohydrolase 1045022..1046098 Jonesia denitrificans DSM 20603 8380161 YP_003160944.1 CDS Jden_0985 NC_013174.1 1046294 1046704 D TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: swi:Swit_2657 30S ribosomal protein S16; 30S ribosomal protein S16 1046294..1046704 Jonesia denitrificans DSM 20603 8380162 YP_003160945.1 CDS Jden_0986 NC_013174.1 1046704 1046943 D KEGG: mxa:MXAN_3546 KH domain protein; KH domain-containing protein 1046704..1046943 Jonesia denitrificans DSM 20603 8380163 YP_003160946.1 CDS Jden_0987 NC_013174.1 1047025 1047579 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: bra:BRADO0377 16S rRNA processing protein, putative function; 16S rRNA processing protein RimM 1047025..1047579 Jonesia denitrificans DSM 20603 8380164 YP_003160947.1 CDS Jden_0988 NC_013174.1 1047576 1048460 D PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: glo:Glov_2453 tRNA (guanine-N1)- methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 1047576..1048460 Jonesia denitrificans DSM 20603 8380165 YP_003160948.1 CDS Jden_0989 NC_013174.1 1048588 1048944 D TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: gur:Gura_3758 50S ribosomal protein L19; 50S ribosomal protein L19 1048588..1048944 Jonesia denitrificans DSM 20603 8380166 YP_003160949.1 CDS Jden_0990 NC_013174.1 1048963 1049817 D TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gsu:GSU1267 signal peptidase I; signal peptidase I 1048963..1049817 Jonesia denitrificans DSM 20603 8380167 YP_003160950.1 CDS Jden_0991 NC_013174.1 1049835 1050746 D PFAM: ribonuclease HII/HIII; KEGG: cak:Caul_4366 ribonuclease H; Ribonuclease H 1049835..1050746 Jonesia denitrificans DSM 20603 8380168 YP_003160951.1 CDS Jden_0992 NC_013174.1 1050754 1051053 D hypothetical protein 1050754..1051053 Jonesia denitrificans DSM 20603 8380169 YP_003160952.1 CDS Jden_0993 NC_013174.1 1051212 1051601 D PFAM: protein of unknown function UPF0102; KEGG: gur:Gura_3756 hypothetical protein; hypothetical protein 1051212..1051601 Jonesia denitrificans DSM 20603 8380170 YP_003160953.1 CDS Jden_0994 NC_013174.1 1051598 1052620 D PFAM: magnesium chelatase ChlI subunit; KEGG: scl:sce2623 ATPase with chaperone activity, ComM-like protein; magnesium chelatase ChlI subunit 1051598..1052620 Jonesia denitrificans DSM 20603 8380171 YP_003160954.1 CDS Jden_0995 NC_013174.1 1052640 1053491 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: slo:Shew_1306 CMP/dCMP deaminase, zinc- binding; zinc-binding CMP/dCMP deaminase complement(1052640..1053491) Jonesia denitrificans DSM 20603 8380172 YP_003160955.1 CDS Jden_0996 NC_013174.1 1053686 1055425 R KEGG: rce:RC1_1141 hypothetical protein; hypothetical protein complement(1053686..1055425) Jonesia denitrificans DSM 20603 8380173 YP_003160956.1 CDS Jden_0997 NC_013174.1 1055425 1055673 R KEGG: ajs:Ajs_2216 hypothetical protein; hypothetical protein complement(1055425..1055673) Jonesia denitrificans DSM 20603 8380174 YP_003160957.1 CDS Jden_0998 NC_013174.1 1055670 1056605 R KEGG: bcs:BCAN_B0381 hypothetical protein; hypothetical protein complement(1055670..1056605) Jonesia denitrificans DSM 20603 8380175 YP_003160958.1 CDS Jden_0999 NC_013174.1 1057349 1060039 R KEGG: gsu:GSU0763 helicase, putative; helicase complement(1057349..1060039) Jonesia denitrificans DSM 20603 8380176 YP_003160959.1 CDS Jden_1000 NC_013174.1 1060151 1061338 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tgr:Tgr7_0193 smf protein; DNA protecting protein DprA 1060151..1061338 Jonesia denitrificans DSM 20603 8380177 YP_003160960.1 CDS Jden_1001 NC_013174.1 1061589 1062590 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LI0111 site-specific recombinase XerC; integrase family protein 1061589..1062590 Jonesia denitrificans DSM 20603 8380178 YP_003160961.1 CDS Jden_1002 NC_013174.1 1062637 1063488 D KEGG: mgm:Mmc1_3037 RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; RNA polymerase sigma 28 subunit FliA/WhiG 1062637..1063488 Jonesia denitrificans DSM 20603 8380179 YP_003160962.1 CDS Jden_1003 NC_013174.1 1063506 1064018 R PFAM: Peptidase M23; KEGG: smt:Smal_2737 peptidase M23; peptidase M23 complement(1063506..1064018) Jonesia denitrificans DSM 20603 8380180 YP_003160963.1 CDS Jden_1004 NC_013174.1 1064373 1065224 D TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2; 30S ribosomal protein S2 1064373..1065224 Jonesia denitrificans DSM 20603 8380181 YP_003160964.1 CDS Jden_1005 NC_013174.1 1065294 1066133 D TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: sil:SPO1975 elongation factor Ts; translation elongation factor Ts 1065294..1066133 Jonesia denitrificans DSM 20603 8380182 YP_003160965.1 CDS Jden_1006 NC_013174.1 1066239 1066997 D TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: bcb:BCB4264_A3923 uridylate kinase; uridylate kinase 1066239..1066997 Jonesia denitrificans DSM 20603 8380183 YP_003160966.1 CDS Jden_1007 NC_013174.1 1067046 1067603 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: bha:BH2424 ribosome recycling factor; ribosome recycling factor 1067046..1067603 Jonesia denitrificans DSM 20603 8380184 YP_003160967.1 CDS Jden_1008 NC_013174.1 1067603 1068472 D PFAM: phosphatidate cytidylyltransferase; KEGG: aeh:Mlg_1858 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1067603..1068472 Jonesia denitrificans DSM 20603 8380185 YP_003160968.1 CDS Jden_1009 NC_013174.1 1068505 1069635 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: afw:Anae109_2180 radical SAM protein; radical SAM enzyme, Cfr family 1068505..1069635 Jonesia denitrificans DSM 20603 8380186 YP_003160969.1 CDS Jden_1010 NC_013174.1 1069645 1070184 D hypothetical protein 1069645..1070184 Jonesia denitrificans DSM 20603 8380187 YP_003160970.1 CDS Jden_1011 NC_013174.1 1070181 1071404 D KEGG: smt:Smal_1259 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1070181..1071404 Jonesia denitrificans DSM 20603 8380188 YP_003160971.1 CDS Jden_1012 NC_013174.1 1071413 1072729 D PFAM: peptidase M50; KEGG: dol:Dole_0481 putative membrane-associated zinc metalloprotease; peptidase M50 1071413..1072729 Jonesia denitrificans DSM 20603 8380189 YP_003160972.1 CDS Jden_1013 NC_013174.1 1072849 1074000 D KEGG: gsu:GSU1459 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1072849..1074000 Jonesia denitrificans DSM 20603 8380190 YP_003160973.1 CDS Jden_1014 NC_013174.1 1074007 1074906 D PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1267 hypothetical protein; N-acetyltransferase GCN5 1074007..1074906 Jonesia denitrificans DSM 20603 8380191 YP_003160974.1 CDS Jden_1015 NC_013174.1 1074951 1076735 D KEGG: bmj:BMULJ_00441 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; prolyl-tRNA synthetase 1074951..1076735 Jonesia denitrificans DSM 20603 8380192 YP_003160975.1 CDS Jden_1016 NC_013174.1 1076830 1077888 R KEGG: azo:azo1098 hypothetical protein; hypothetical protein complement(1076830..1077888) Jonesia denitrificans DSM 20603 8380193 YP_003160976.1 CDS Jden_1017 NC_013174.1 1078060 1078593 D PFAM: protein of unknown function DUF150; KEGG: mxa:MXAN_2065 hypothetical protein; hypothetical protein 1078060..1078593 Jonesia denitrificans DSM 20603 8380194 YP_003160977.1 CDS Jden_1018 NC_013174.1 1078596 1079660 D KEGG: bha:BH2416 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; NusA antitermination factor 1078596..1079660 Jonesia denitrificans DSM 20603 8380195 YP_003160978.1 CDS Jden_1019 NC_013174.1 1080345 1083359 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Ras family protein; KEGG: gbm:Gbem_1302 translation initiation factor IF-2; translation initiation factor IF-2 1080345..1083359 Jonesia denitrificans DSM 20603 8380196 YP_003160979.1 CDS Jden_1020 NC_013174.1 1083474 1083935 D TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: bsu:BSU16650 ribosome-binding factor A; ribosome-binding factor A 1083474..1083935 Jonesia denitrificans DSM 20603 8380197 YP_003160980.1 CDS Jden_1021 NC_013174.1 1083932 1084933 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase II; KEGG: prw:PsycPRwf_0159 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 1083932..1084933 Jonesia denitrificans DSM 20603 8380198 YP_003160981.1 CDS Jden_1022 NC_013174.1 1084930 1085877 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: glo:Glov_1649 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1084930..1085877 Jonesia denitrificans DSM 20603 8380199 YP_003160982.1 CDS Jden_1023 NC_013174.1 1086023 1087933 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: GH21354 gene product from transcript GH21354- RA; N-acetylmuramoyl-L-alanine amidase family 2 protein 1086023..1087933 Jonesia denitrificans DSM 20603 8380200 YP_003160983.1 CDS Jden_1024 NC_013174.1 1088056 1088325 D TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dds:Ddes_0055 ribosomal protein S15; 30S ribosomal protein S15 1088056..1088325 Jonesia denitrificans DSM 20603 8380201 YP_003160984.1 CDS Jden_1025 NC_013174.1 1088539 1090746 D KEGG: bha:BH2407 polynucleotide phosphorylase/polyadenylase; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 1088539..1090746 Jonesia denitrificans DSM 20603 8380202 YP_003160985.1 CDS Jden_1026 NC_013174.1 1090747 1092066 D PFAM: peptidase M16 domain protein; KEGG: baa:BA_4413 insulinase (peptidase family M16); processing peptidase 1090747..1092066 Jonesia denitrificans DSM 20603 8380203 YP_003160986.1 CDS Jden_1027 NC_013174.1 1092092 1092847 D KEGG: bha:BH1680 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 1092092..1092847 Jonesia denitrificans DSM 20603 8380204 YP_003160987.1 CDS Jden_1028 NC_013174.1 1092844 1093347 D hypothetical protein 1092844..1093347 Jonesia denitrificans DSM 20603 8380205 YP_003160988.1 CDS Jden_1029 NC_013174.1 1093344 1093889 R PFAM: GCN5-related N-acetyltransferase; KEGG: har:HEAR0849 putative acetyltransferase; N-acetyltransferase GCN5 complement(1093344..1093889) Jonesia denitrificans DSM 20603 8380206 YP_003160989.1 CDS Jden_1030 NC_013174.1 1094062 1094862 D KEGG: mpt:Mpe_A2051 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 1094062..1094862 Jonesia denitrificans DSM 20603 8380207 YP_003160990.1 CDS Jden_1031 NC_013174.1 1094859 1095434 D PFAM: dihydrofolate reductase region; KEGG: dihydrofolate reductase; Dihydrofolate reductase 1094859..1095434 Jonesia denitrificans DSM 20603 8380208 YP_003160991.1 CDS Jden_1032 NC_013174.1 1095440 1096363 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: cvi:CV_2048 dihydrodipicolinate synthase; dihydrodipicolinate synthase 1095440..1096363 Jonesia denitrificans DSM 20603 8380209 YP_003160992.1 CDS Jden_1033 NC_013174.1 1096378 1098063 D PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: glo:Glov_3415 beta-lactamase domain protein; beta-lactamase domain-containing protein 1096378..1098063 Jonesia denitrificans DSM 20603 8380210 YP_003160993.1 CDS Jden_1034 NC_013174.1 1098255 1101011 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_2445 cell divisionFtsK/SpoIIIE; cell division protein FtsK 1098255..1101011 Jonesia denitrificans DSM 20603 8380211 YP_003160994.1 CDS Jden_1035 NC_013174.1 1101090 1101695 D TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bha:BH2386 phosphatidylglycerophosphate synthase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1101090..1101695 Jonesia denitrificans DSM 20603 8380212 YP_003160995.1 CDS Jden_1036 NC_013174.1 1101692 1102228 D PFAM: CinA domain protein; KEGG: dps:DP2957 competence-damage inducible protein (CinA); CinA domain-containing protein 1101692..1102228 Jonesia denitrificans DSM 20603 8380213 YP_003160996.1 CDS Jden_1037 NC_013174.1 1102402 1102701 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mag:amb0168 anaerobic benzoate catabolism transcriptional regulator; XRE family transcriptional regulator 1102402..1102701 Jonesia denitrificans DSM 20603 8380214 YP_003160997.1 CDS Jden_1038 NC_013174.1 1102757 1103611 R PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding; KEGG: afw:Anae109_1725 DNA-(apurinic or apyrimidinic site) lyase; formamidopyrimidine-DNA glycosylase catalytic domain-containing protein complement(1102757..1103611) Jonesia denitrificans DSM 20603 8380215 YP_003160998.1 CDS Jden_1039 NC_013174.1 1103598 1108454 R PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce3970 putative ATP-dependent helicase; DEAD/DEAH box helicase complement(1103598..1108454) Jonesia denitrificans DSM 20603 8380216 YP_003160999.1 CDS Jden_1040 NC_013174.1 1108628 1108894 D hypothetical protein 1108628..1108894 Jonesia denitrificans DSM 20603 8380217 YP_003161000.1 CDS Jden_1041 NC_013174.1 1109146 1110240 D KEGG: hha:Hhal_1655 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1109146..1110240 Jonesia denitrificans DSM 20603 8380218 YP_003161001.1 CDS Jden_1042 NC_013174.1 1110246 1110776 D PFAM: regulatory protein RecX; KEGG: scl:sce0207 hypothetical protein; regulatory protein RecX 1110246..1110776 Jonesia denitrificans DSM 20603 8380219 YP_003161002.1 CDS Jden_1043 NC_013174.1 1110899 1112365 D KEGG: dds:Ddes_1693 RNA binding metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase 1110899..1112365 Jonesia denitrificans DSM 20603 8380220 YP_003161003.1 CDS Jden_1044 NC_013174.1 1112527 1114131 D KEGG: bha:BH2372 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 1112527..1114131 Jonesia denitrificans DSM 20603 8380221 YP_003161004.1 CDS Jden_1045 NC_013174.1 1114182 1114709 R hypothetical protein complement(1114182..1114709) Jonesia denitrificans DSM 20603 8380222 YP_003161005.1 CDS Jden_1046 NC_013174.1 1114706 1115248 R hypothetical protein complement(1114706..1115248) Jonesia denitrificans DSM 20603 8380223 YP_003161006.1 CDS Jden_1047 NC_013174.1 1115343 1115936 D hypothetical protein 1115343..1115936 Jonesia denitrificans DSM 20603 8380224 YP_003161007.1 CDS Jden_1048 NC_013174.1 1115933 1116910 D KEGG: gme:Gmet_2052 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1115933..1116910 Jonesia denitrificans DSM 20603 8380225 YP_003161008.1 CDS Jden_1049 NC_013174.1 1116907 1117821 D KEGG: scl:sce8155 hypothetical protein; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 1116907..1117821 Jonesia denitrificans DSM 20603 8380226 YP_003161009.1 CDS Jden_1050 NC_013174.1 1117818 1118495 R PFAM: methyltransferase small; KEGG: bcu:BCAH820_0112 YbxB protein; methyltransferase small complement(1117818..1118495) Jonesia denitrificans DSM 20603 8380227 YP_003161010.1 CDS Jden_1051 NC_013174.1 1118640 1120169 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: GTP-binding family protein; K03665 GTP- binding protein HflX; GTP-binding proten HflX 1118640..1120169 Jonesia denitrificans DSM 20603 8380228 YP_003161011.1 CDS Jden_1052 NC_013174.1 1120255 1122264 D SMART: helicase c2; KEGG: mxa:MXAN_6717 putative ATP-dependent helicase; helicase c2 1120255..1122264 Jonesia denitrificans DSM 20603 8380229 YP_003161012.1 CDS Jden_1053 NC_013174.1 1122308 1123306 D TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: scl:sce5245 L-lactate dehydrogenase; L-lactate dehydrogenase 1122308..1123306 Jonesia denitrificans DSM 20603 8380230 YP_003161013.1 CDS Jden_1054 NC_013174.1 1123323 1124048 R KEGG: bcy:Bcer98_2344 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA complement(1123323..1124048) Jonesia denitrificans DSM 20603 8380231 YP_003161014.1 CDS Jden_1055 NC_013174.1 1124337 1124774 D PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; Peptidoglycan-binding LysM 1124337..1124774 Jonesia denitrificans DSM 20603 8380232 YP_003161015.1 CDS Jden_1056 NC_013174.1 1124843 1125304 D PFAM: ATP-cone domain protein; KEGG: glo:Glov_1748 ATP-cone domain protein; ATP-cone domain-containing protein 1124843..1125304 Jonesia denitrificans DSM 20603 8380233 YP_003161016.1 CDS Jden_1057 NC_013174.1 1125283 1126320 R PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase; aldo/keto reductase complement(1125283..1126320) Jonesia denitrificans DSM 20603 8380234 YP_003161017.1 CDS Jden_1058 NC_013174.1 1126403 1127653 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: abm:ABSDF0338 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(1126403..1127653) Jonesia denitrificans DSM 20603 8380235 YP_003161018.1 CDS Jden_1059 NC_013174.1 1127716 1129914 R KEGG: bcb:BCB4264_A2823 UvrD/Rep helicase family protein; superfamily I DNA and RNA helicase-like protein complement(1127716..1129914) Jonesia denitrificans DSM 20603 8380236 YP_003161019.1 CDS Jden_1060 NC_013174.1 1130162 1131094 D PFAM: protein of unknown function DUF75; hypothetical protein 1130162..1131094 Jonesia denitrificans DSM 20603 8380237 YP_003161020.1 CDS Jden_1061 NC_013174.1 1131104 1132009 R KEGG: har:HEAR1704 hypothetical protein; hypothetical protein complement(1131104..1132009) Jonesia denitrificans DSM 20603 8380238 YP_003161021.1 CDS Jden_1062 NC_013174.1 1132090 1132596 D hypothetical protein 1132090..1132596 Jonesia denitrificans DSM 20603 8380239 YP_003161022.1 CDS Jden_1063 NC_013174.1 1132598 1133839 D PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1132598..1133839 Jonesia denitrificans DSM 20603 8380240 YP_003161023.1 CDS Jden_1064 NC_013174.1 1133896 1134291 D hypothetical protein 1133896..1134291 Jonesia denitrificans DSM 20603 8380241 YP_003161024.1 CDS Jden_1065 NC_013174.1 1134772 1135224 D TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ; MraZ protein 1134772..1135224 Jonesia denitrificans DSM 20603 8380242 YP_003161025.1 CDS Jden_1066 NC_013174.1 1135344 1136348 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bcy:Bcer98_2568 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 1135344..1136348 Jonesia denitrificans DSM 20603 8380243 YP_003161026.1 CDS Jden_1067 NC_013174.1 1136345 1136767 D hypothetical protein 1136345..1136767 Jonesia denitrificans DSM 20603 8380244 YP_003161027.1 CDS Jden_1068 NC_013174.1 1137182 1138921 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gbm:Gbem_0485 penicillin-binding protein transpeptidase; peptidoglycan glycosyltransferase 1137182..1138921 Jonesia denitrificans DSM 20603 8380245 YP_003161028.1 CDS Jden_1069 NC_013174.1 1139102 1140706 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sfu:Sfum_3466 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramyl tripeptide synthetase 1139102..1140706 Jonesia denitrificans DSM 20603 8380246 YP_003161029.1 CDS Jden_1070 NC_013174.1 1140651 1142180 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aeh:Mlg_2197 UDP-N-acetylmuramoyl-tripeptide-- D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase 1140651..1142180 Jonesia denitrificans DSM 20603 8380247 YP_003161030.1 CDS Jden_1071 NC_013174.1 1142177 1143259 D KEGG: bcr:BCAH187_A3966 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide- transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 1142177..1143259 Jonesia denitrificans DSM 20603 8380248 YP_003161031.1 CDS Jden_1072 NC_013174.1 1143244 1144752 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: reu:Reut_A2981 UDP-N-acetylmuramoyl-L-alanyl- D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1143244..1144752 Jonesia denitrificans DSM 20603 8380249 YP_003161032.1 CDS Jden_1073 NC_013174.1 1144756 1146006 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dvm:DvMF_0957 cell division protein FtsW; cell division protein FtsW 1144756..1146006 Jonesia denitrificans DSM 20603 8380250 YP_003161033.1 CDS Jden_1074 NC_013174.1 1146022 1147149 D KEGG: dvu:DVU2504 UDP-N-acetylglucosamine--N- acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 1146022..1147149 Jonesia denitrificans DSM 20603 8380251 YP_003161034.1 CDS Jden_1075 NC_013174.1 1147146 1148624 D TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: atc:AGR_C_3796 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 1147146..1148624 Jonesia denitrificans DSM 20603 8380252 YP_003161035.1 CDS Jden_1076 NC_013174.1 1148621 1149631 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: tcx:Tcr_0586 cell division protein FtsQ; Polypeptide-transport-associated domain-containing protein FtsQ-type 1148621..1149631 Jonesia denitrificans DSM 20603 8380253 YP_003161036.1 CDS Jden_1077 NC_013174.1 1149827 1151149 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; cell division protein FtsZ 1149827..1151149 Jonesia denitrificans DSM 20603 8380254 YP_003161037.1 CDS Jden_1078 NC_013174.1 1151161 1151916 D PFAM: protein of unknown function DUF152; KEGG: mxa:MXAN_2999 conserved hypothetical protein TIGR00726; hypothetical protein 1151161..1151916 Jonesia denitrificans DSM 20603 8380255 YP_003161038.1 CDS Jden_1079 NC_013174.1 1152132 1152614 D PFAM: protein of unknown function DUF552; KEGG: bha:BH2549 hypothetical protein; hypothetical protein 1152132..1152614 Jonesia denitrificans DSM 20603 8380256 YP_003161039.1 CDS Jden_1080 NC_013174.1 1152620 1152916 D PFAM: protein of unknown function YGGT; KEGG: oan:Oant_0989 protein of unknown function YGGT; hypothetical protein 1152620..1152916 Jonesia denitrificans DSM 20603 8380257 YP_003161040.1 CDS Jden_1081 NC_013174.1 1153081 1153698 D PFAM: DivIVA family protein; KEGG: bsu:BSU15420 cell-division initiation protein; DivIVA family protein 1153081..1153698 Jonesia denitrificans DSM 20603 8380258 YP_003161041.1 CDS Jden_1082 NC_013174.1 1153816 1154268 D PFAM: zinc finger DksA/TraR C4-type; KEGG: sat:SYN_01337 DnaK suppressor protein; TraR/DksA family transcriptional regulator 1153816..1154268 Jonesia denitrificans DSM 20603 8380259 YP_003161042.1 CDS Jden_1083 NC_013174.1 1154327 1154917 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: neu:NE1148 signal peptidase II; lipoprotein signal peptidase 1154327..1154917 Jonesia denitrificans DSM 20603 8380260 YP_003161043.1 CDS Jden_1084 NC_013174.1 1154914 1155855 D KEGG: tgr:Tgr7_0815 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; RluA family pseudouridine synthase 1154914..1155855 Jonesia denitrificans DSM 20603 8380261 YP_003161044.1 CDS Jden_1085 NC_013174.1 1155855 1156361 D PFAM: GCN5-related N-acetyltransferase; KEGG: csa:Csal_2448 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 1155855..1156361 Jonesia denitrificans DSM 20603 8380262 YP_003161045.1 CDS Jden_1086 NC_013174.1 1156423 1159968 D KEGG: aba:Acid345_2747 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1156423..1159968 Jonesia denitrificans DSM 20603 8380263 YP_003161046.1 CDS Jden_1087 NC_013174.1 1159969 1160379 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; pyridoxamine 5'-phosphate oxidase-related FMN- binding 1159969..1160379 Jonesia denitrificans DSM 20603 8380264 YP_003161047.1 CDS Jden_1088 NC_013174.1 1160376 1160630 R PFAM: RNA-binding S4 domain protein; KEGG: dps:DP2177 hypothetical protein; RNA-binding S4 domain-containing protein complement(1160376..1160630) Jonesia denitrificans DSM 20603 8380265 YP_003161048.1 CDS Jden_1089 NC_013174.1 1160765 1162090 D KEGG: bid:Bind_0668 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase 1160765..1162090 Jonesia denitrificans DSM 20603 8380266 YP_003161049.1 CDS Jden_1090 NC_013174.1 1162147 1162914 D PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aha:AHA_1426 DNA-binding transcriptional repressor MalI; transcriptional regulator, LacI family 1162147..1162914 Jonesia denitrificans DSM 20603 8380267 YP_003161050.1 CDS Jden_1091 NC_013174.1 1162967 1165333 R KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; RecQ familyATP-dependent DNA helicase complement(1162967..1165333) Jonesia denitrificans DSM 20603 8380268 YP_003161051.1 CDS Jden_1092 NC_013174.1 1165611 1166771 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bur:Bcep18194_C7445 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 1165611..1166771 Jonesia denitrificans DSM 20603 8380269 YP_003161052.1 CDS Jden_1093 NC_013174.1 1166768 1167379 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: msl:Msil_2554 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1166768..1167379 Jonesia denitrificans DSM 20603 8380270 YP_003161053.1 CDS Jden_1094 NC_013174.1 1167376 1167819 D hypothetical protein 1167376..1167819 Jonesia denitrificans DSM 20603 8380271 YP_003161054.1 CDS Jden_1095 NC_013174.1 1167816 1168463 D TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: abc:ACICU_03431 glutamine amidotransferase; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1167816..1168463 Jonesia denitrificans DSM 20603 8380272 YP_003161055.1 CDS Jden_1096 NC_013174.1 1168524 1169255 D KEGG: plu:plu0797 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein; bifunctional HisA/TrpF protein 1168524..1169255 Jonesia denitrificans DSM 20603 8380273 YP_003161056.1 CDS Jden_1097 NC_013174.1 1169252 1169995 D hypothetical protein 1169252..1169995 Jonesia denitrificans DSM 20603 8380274 YP_003161057.1 CDS Jden_1098 NC_013174.1 1169992 1170729 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: degPch3; serine protease DO-like protein; peptidase S1 and S6 chymotrypsin/Hap complement(1169992..1170729) Jonesia denitrificans DSM 20603 8380275 YP_003161058.1 CDS Jden_1099 NC_013174.1 1170726 1171247 R KEGG: hha:Hhal_1880 chromosome segregation protein SMC; hypothetical protein complement(1170726..1171247) Jonesia denitrificans DSM 20603 8380276 YP_003161059.1 CDS Jden_1100 NC_013174.1 1171439 1171795 R hypothetical protein complement(1171439..1171795) Jonesia denitrificans DSM 20603 8380277 YP_003161060.1 CDS Jden_1101 NC_013174.1 1171984 1173429 R PFAM: Catalase domain protein; KEGG: bpt:Bpet0345 hypothetical protein; catalase complement(1171984..1173429) Jonesia denitrificans DSM 20603 8380278 YP_003161061.1 CDS Jden_1102 NC_013174.1 1173505 1173927 R PFAM: ferric-uptake regulator; KEGG: nis:NIS_1150 peroxide stress regulator; ferric uptake regulator, Fur family complement(1173505..1173927) Jonesia denitrificans DSM 20603 8380279 YP_003161062.1 CDS Jden_1103 NC_013174.1 1174264 1174965 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: sil:SPO2638 translation initiation factor IF- 3; translation initiation factor IF-3 1174264..1174965 Jonesia denitrificans DSM 20603 8380280 YP_003161063.1 CDS Jden_1104 NC_013174.1 1175086 1175280 D TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: aba:Acid345_0714 LSU ribosomal protein L35P; 50S ribosomal protein L35 1175086..1175280 Jonesia denitrificans DSM 20603 8380281 YP_003161064.1 CDS Jden_1105 NC_013174.1 1175338 1175724 D TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: oan:Oant_0800 ribosomal protein L20; 50S ribosomal protein L20 1175338..1175724 Jonesia denitrificans DSM 20603 8380282 YP_003161065.1 CDS Jden_1106 NC_013174.1 1175772 1176599 D PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bcy:Bcer98_3250 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1175772..1176599 Jonesia denitrificans DSM 20603 8380283 YP_003161066.1 CDS Jden_1107 NC_013174.1 1176603 1177964 D PFAM: amino acid permease-associated region; KEGG: xcv:XCV3131 amino acid transporter family protein; amino acid permease 1176603..1177964 Jonesia denitrificans DSM 20603 8380284 YP_003161067.1 CDS Jden_1108 NC_013174.1 1178000 1179064 D TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: xop:PXO_01387 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1178000..1179064 Jonesia denitrificans DSM 20603 8380285 YP_003161068.1 CDS Jden_1109 NC_013174.1 1179064 1181628 D KEGG: afw:Anae109_1884 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 1179064..1181628 Jonesia denitrificans DSM 20603 8380286 YP_003161069.1 CDS Jden_1110 NC_013174.1 1181735 1181992 R hypothetical protein complement(1181735..1181992) Jonesia denitrificans DSM 20603 8380287 YP_003161070.1 CDS Jden_1111 NC_013174.1 1182121 1183179 D KEGG: pde:Pden_1656 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 1182121..1183179 Jonesia denitrificans DSM 20603 8380288 YP_003161071.1 CDS Jden_1112 NC_013174.1 1183176 1184342 D KEGG: dvm:DvMF_2872 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 1183176..1184342 Jonesia denitrificans DSM 20603 8380289 YP_003161072.1 CDS Jden_1113 NC_013174.1 1184339 1185301 D TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sat:SYN_02154 acetylglutamate kinase; acetylglutamate kinase 1184339..1185301 Jonesia denitrificans DSM 20603 8380290 YP_003161073.1 CDS Jden_1114 NC_013174.1 1185298 1186560 D TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: gbm:Gbem_3636 acetylornithine and succinylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase 1185298..1186560 Jonesia denitrificans DSM 20603 8380291 YP_003161074.1 CDS Jden_1115 NC_013174.1 1186565 1187497 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: afr:AFE_0405 ornithine carbamoyltransferase; ornithine carbamoyltransferase 1186565..1187497 Jonesia denitrificans DSM 20603 8380292 YP_003161075.1 CDS Jden_1116 NC_013174.1 1187476 1188063 D TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: bsu:BSU24250 arginine repressor; arginine repressor ArgR 1187476..1188063 Jonesia denitrificans DSM 20603 8380293 YP_003161076.1 CDS Jden_1117 NC_013174.1 1188060 1189301 D KEGG: bsu:BSU29450 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 1188060..1189301 Jonesia denitrificans DSM 20603 8380294 YP_003161077.1 CDS Jden_1118 NC_013174.1 1189310 1190734 D TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pfo:Pfl01_2852 argininosuccinate lyase; argininosuccinate lyase 1189310..1190734 Jonesia denitrificans DSM 20603 8380295 YP_003161078.1 CDS Jden_1119 NC_013174.1 1190760 1191332 D KEGG: bcr:BCAH187_A2829 putative uridine kinase; hypothetical protein 1190760..1191332 Jonesia denitrificans DSM 20603 8380296 YP_003161079.1 CDS Jden_1120 NC_013174.1 1191452 1192720 D KEGG: bcy:Bcer98_3333 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; tyrosyl-tRNA synthetase 1191452..1192720 Jonesia denitrificans DSM 20603 8380297 YP_003161080.1 CDS Jden_1121 NC_013174.1 1198715 1200571 D KEGG: hypothetical protein; hypothetical protein 1198715..1200571 Jonesia denitrificans DSM 20603 8381769 YP_003161081.1 CDS Jden_1122 NC_013174.1 1200568 1201596 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bat:BAS4827 phosphatase; HAD-superfamily hydrolase 1200568..1201596 Jonesia denitrificans DSM 20603 8380299 YP_003161082.1 CDS Jden_1123 NC_013174.1 1201659 1201808 D hypothetical protein 1201659..1201808 Jonesia denitrificans DSM 20603 8380300 YP_003161083.1 CDS Jden_1124 NC_013174.1 1201805 1202737 D KEGG: pca:Pcar_1058 rRNA methylase; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; hemolysin A 1201805..1202737 Jonesia denitrificans DSM 20603 8380301 YP_003161084.1 CDS Jden_1125 NC_013174.1 1202734 1203693 D PFAM: ATP-NAD/AcoX kinase; KEGG: afw:Anae109_0775 ATP-NAD/AcoX kinase; NAD(+) kinase 1202734..1203693 Jonesia denitrificans DSM 20603 8380302 YP_003161085.1 CDS Jden_1126 NC_013174.1 1203686 1205419 D KEGG: bha:BH2776 DNA repair and genetic recombination; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; DNA repair protein RecN 1203686..1205419 Jonesia denitrificans DSM 20603 8380303 YP_003161086.1 CDS Jden_1127 NC_013174.1 1205425 1206624 D PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: bha:BH2771 hypothetical protein; Thiamin pyrophosphokinase catalytic region 1205425..1206624 Jonesia denitrificans DSM 20603 8380304 YP_003161087.1 CDS Jden_1128 NC_013174.1 1206679 1207692 D KEGG: gme:Gmet_2478 methyl-accepting chemotaxis sensory transducer; hypothetical protein 1206679..1207692 Jonesia denitrificans DSM 20603 8380305 YP_003161088.1 CDS Jden_1129 NC_013174.1 1207692 1208594 D KEGG: similar to GTPase, IMAP family member 8; hypothetical protein 1207692..1208594 Jonesia denitrificans DSM 20603 8380306 YP_003161089.1 CDS Jden_1130 NC_013174.1 1208584 1210200 D PFAM: virulence factor MVIN family protein; KEGG: reh:H16_A3066 hypothetical membrane protein in MviN family; virulence factor MVIN family protein 1208584..1210200 Jonesia denitrificans DSM 20603 8380307 YP_003161090.1 CDS Jden_1131 NC_013174.1 1210197 1211270 D PFAM: glycosyl transferase group 1; KEGG: cti:RALTA_A2365 putative glycosyl transferase, group 1; group 1 glycosyl transferase 1210197..1211270 Jonesia denitrificans DSM 20603 8380308 YP_003161091.1 CDS Jden_1132 NC_013174.1 1211376 1213052 D KEGG: bha:BH3792 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; CTP synthase 1211376..1213052 Jonesia denitrificans DSM 20603 8380309 YP_003161092.1 CDS Jden_1133 NC_013174.1 1213045 1213722 D PFAM: NUDIX hydrolase; KEGG: noc:Noc_2512 NUDIX hydrolase; NUDIX hydrolase 1213045..1213722 Jonesia denitrificans DSM 20603 8380310 YP_003161093.1 CDS Jden_1134 NC_013174.1 1214024 1216552 D PFAM: glycoside hydrolase family 48; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein; glycoside hydrolase family protein 1214024..1216552 Jonesia denitrificans DSM 20603 8380311 YP_003161094.1 CDS Jden_1135 NC_013174.1 1216623 1217579 R PFAM: cytochrome oxidase assembly; KEGG: sus:Acid_4821 cytochrome oxidase assembly; cytochrome oxidase assembly complement(1216623..1217579) Jonesia denitrificans DSM 20603 8380312 YP_003161095.1 CDS Jden_1136 NC_013174.1 1217585 1218316 R KEGG: cko:CKO_02699 hypothetical protein; hypothetical protein complement(1217585..1218316) Jonesia denitrificans DSM 20603 8380313 YP_003161096.1 CDS Jden_1137 NC_013174.1 1218339 1219112 R PFAM: ABC-2 type transporter; KEGG: aha:AHA_1263 ABC transporter permease protein; ABC transporter complement(1218339..1219112) Jonesia denitrificans DSM 20603 8380314 YP_003161097.1 CDS Jden_1138 NC_013174.1 1219109 1220044 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_1597 ABC transporter, ATP-binding protein; ABC transporter complement(1219109..1220044) Jonesia denitrificans DSM 20603 8380315 YP_003161098.1 CDS Jden_1139 NC_013174.1 1220234 1220992 D KEGG: vsp:VS_2907 hypothetical protein; putative transcriptional regulator 1220234..1220992 Jonesia denitrificans DSM 20603 8380316 YP_003161099.1 CDS Jden_1140 NC_013174.1 1221045 1222490 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB; FeS assembly protein SufB 1221045..1222490 Jonesia denitrificans DSM 20603 8380317 YP_003161100.1 CDS Jden_1141 NC_013174.1 1222490 1223713 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mxa:MXAN_1155 FeS assembly protein SufD; FeS assembly protein SufD 1222490..1223713 Jonesia denitrificans DSM 20603 8380318 YP_003161101.1 CDS Jden_1142 NC_013174.1 1223710 1224054 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bpt:Bpet3740 phenylpropionate dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 1223710..1224054 Jonesia denitrificans DSM 20603 8380319 YP_003161102.1 CDS Jden_1143 NC_013174.1 1224066 1224827 D KEGG: bcy:Bcer98_3579 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 1224066..1224827 Jonesia denitrificans DSM 20603 8380320 YP_003161103.1 CDS Jden_1144 NC_013174.1 1224933 1226231 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccs:CCNA_01936 cysteine desulfurase/selenocysteine lyase; SufS subfamily cysteine desulfurase 1224933..1226231 Jonesia denitrificans DSM 20603 8380321 YP_003161104.1 CDS Jden_1145 NC_013174.1 1226296 1226832 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein; NifU family SUF system FeS assembly protein 1226296..1226832 Jonesia denitrificans DSM 20603 8380322 YP_003161105.1 CDS Jden_1146 NC_013174.1 1226829 1227158 D PFAM: protein of unknown function DUF59; KEGG: nha:Nham_1459 hypothetical protein; hypothetical protein 1226829..1227158 Jonesia denitrificans DSM 20603 8380323 YP_003161106.1 CDS Jden_1147 NC_013174.1 1227337 1227936 R KEGG: hypothetical protein; hypothetical protein complement(1227337..1227936) Jonesia denitrificans DSM 20603 8380324 YP_003161107.1 CDS Jden_1148 NC_013174.1 1228014 1228631 R KEGG: hypothetical protein; hypothetical protein complement(1228014..1228631) Jonesia denitrificans DSM 20603 8380325 YP_003161108.1 CDS Jden_1149 NC_013174.1 1228787 1229290 D PFAM: regulatory protein MarR; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: rme:Rmet_3619 transcriptional regulator, MarR family; transcriptional regulator, MarR family 1228787..1229290 Jonesia denitrificans DSM 20603 8380326 YP_003161109.1 CDS Jden_1150 NC_013174.1 1229296 1229718 D PFAM: OsmC family protein; KEGG: rme:Rmet_3618 OsmC-like protein; OsmC family protein 1229296..1229718 Jonesia denitrificans DSM 20603 8380327 YP_003161110.1 CDS Jden_1151 NC_013174.1 1229810 1230976 R KEGG: vei:Veis_2603 hypothetical protein; hypothetical protein complement(1229810..1230976) Jonesia denitrificans DSM 20603 8380328 YP_003161111.1 CDS Jden_1152 NC_013174.1 1231150 1232595 D PFAM: fumarate lyase; KEGG: dar:Daro_0481 aspartate ammonia-lyase; fumarate lyase 1231150..1232595 Jonesia denitrificans DSM 20603 8380329 YP_003161112.1 CDS Jden_1153 NC_013174.1 1232552 1233019 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; pyridoxamine 5'-phosphate oxidase-related FMN- binding complement(1232552..1233019) Jonesia denitrificans DSM 20603 8380330 YP_003161113.1 CDS Jden_1154 NC_013174.1 1233093 1234115 D PFAM: L-asparaginase II; KEGG: sil:SPO3349 L-asparaginase; L-asparaginase II 1233093..1234115 Jonesia denitrificans DSM 20603 8380331 YP_003161114.1 CDS Jden_1155 NC_013174.1 1234125 1234544 D KEGG: scl:sce4713 hypothetical protein; hypothetical protein 1234125..1234544 Jonesia denitrificans DSM 20603 8380332 YP_003161115.1 CDS Jden_1156 NC_013174.1 1234552 1235454 R PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: mms:mma_2879 hypothetical protein; hypothetical protein complement(1234552..1235454) Jonesia denitrificans DSM 20603 8380333 YP_003161116.1 CDS Jden_1157 NC_013174.1 1235470 1236141 R PFAM: cobalt transport protein; KEGG: rru:Rru_A3687 cobalt transport protein; cobalt transport protein complement(1235470..1236141) Jonesia denitrificans DSM 20603 8380334 YP_003161117.1 CDS Jden_1158 NC_013174.1 1236138 1236854 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00962 ABC transporter ATP-binding protein; ABC transporter complement(1236138..1236854) Jonesia denitrificans DSM 20603 8380335 YP_003161118.1 CDS Jden_1159 NC_013174.1 1236864 1237559 R PFAM: BioY protein; KEGG: rlt:Rleg2_0581 BioY protein; BioY protein complement(1236864..1237559) Jonesia denitrificans DSM 20603 8380336 YP_003161119.1 CDS Jden_1160 NC_013174.1 1237684 1239282 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO3397 ABC transporter ATP-binding protein; ABC transporter 1237684..1239282 Jonesia denitrificans DSM 20603 8380337 YP_003161120.1 CDS Jden_1161 NC_013174.1 1239302 1240213 R KEGG: bpe:BP3738 hypothetical protein; hypothetical protein complement(1239302..1240213) Jonesia denitrificans DSM 20603 8380338 YP_003161121.1 CDS Jden_1162 NC_013174.1 1240210 1240461 R hypothetical protein complement(1240210..1240461) Jonesia denitrificans DSM 20603 8380339 YP_003161122.1 CDS Jden_1163 NC_013174.1 1240454 1240789 R hypothetical protein complement(1240454..1240789) Jonesia denitrificans DSM 20603 8380340 YP_003161123.1 CDS Jden_1164 NC_013174.1 1240924 1241640 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: aha:AHA_2251 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1240924..1241640 Jonesia denitrificans DSM 20603 8380341 YP_003161124.1 CDS Jden_1165 NC_013174.1 1241687 1242454 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_6034 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 1241687..1242454 Jonesia denitrificans DSM 20603 8380342 YP_003161125.1 CDS Jden_1166 NC_013174.1 1242462 1242977 D PFAM: Phosphoglycerate mutase; KEGG: mlo:mll7959 hypothetical protein; putative phosphohistidine phosphatase, SixA 1242462..1242977 Jonesia denitrificans DSM 20603 8380343 YP_003161126.1 CDS Jden_1167 NC_013174.1 1242982 1243443 D hypothetical protein 1242982..1243443 Jonesia denitrificans DSM 20603 8380344 YP_003161127.1 CDS Jden_1168 NC_013174.1 1243445 1244086 D KEGG: eca:ECA0465 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 1243445..1244086 Jonesia denitrificans DSM 20603 8380345 YP_003161128.1 CDS Jden_1169 NC_013174.1 1244123 1244818 D hypothetical protein 1244123..1244818 Jonesia denitrificans DSM 20603 8380346 YP_003161129.1 CDS Jden_1170 NC_013174.1 1244860 1245441 D PFAM: protein of unknown function DUF461; KEGG: dsh:Dshi_3957 hypothetical protein; hypothetical protein 1244860..1245441 Jonesia denitrificans DSM 20603 8380347 YP_003161130.1 CDS Jden_1171 NC_013174.1 1245431 1246672 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bxe:Bxe_B1834 Tat-translocated enzyme, Dyp- type peroxidase; dyp-type peroxidase family protein 1245431..1246672 Jonesia denitrificans DSM 20603 8380348 YP_003161131.1 CDS Jden_1172 NC_013174.1 1246739 1247977 R TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mxa:MXAN_1524 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase complement(1246739..1247977) Jonesia denitrificans DSM 20603 8380349 YP_003161132.1 CDS Jden_1173 NC_013174.1 1248034 1249248 D TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1; glycogen synthase 1248034..1249248 Jonesia denitrificans DSM 20603 8380350 YP_003161133.1 CDS Jden_1174 NC_013174.1 1249426 1249743 D PFAM: small multidrug resistance protein; KEGG: ypm:YP_0511 suppresses groEL, may be chaperone; small multidrug resistance protein 1249426..1249743 Jonesia denitrificans DSM 20603 8380351 YP_003161134.1 CDS Jden_1175 NC_013174.1 1249740 1250162 D PFAM: small multidrug resistance protein; KEGG: bvi:Bcep1808_2367 small multidrug resistance protein; small multidrug resistance protein 1249740..1250162 Jonesia denitrificans DSM 20603 8380352 YP_003161135.1 CDS Jden_1176 NC_013174.1 1250152 1250958 R KEGG: bur:Bcep18194_C7576 6-phosphogluconate dehydrogenase, NAD-binding; hypothetical protein complement(1250152..1250958) Jonesia denitrificans DSM 20603 8380353 YP_003161136.1 CDS Jden_1177 NC_013174.1 1251016 1251828 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2270 ABC transporter ATP-binding protein; ABC transporter 1251016..1251828 Jonesia denitrificans DSM 20603 8380354 YP_003161137.1 CDS Jden_1178 NC_013174.1 1252021 1252449 D PFAM: protein of unknown function DUF107; KEGG: rme:Rmet_1454 protein of unknown function DUF107; hypothetical protein 1252021..1252449 Jonesia denitrificans DSM 20603 8380355 YP_003161138.1 CDS Jden_1179 NC_013174.1 1252492 1253703 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein; hypothetical protein 1252492..1253703 Jonesia denitrificans DSM 20603 8380356 YP_003161139.1 CDS Jden_1180 NC_013174.1 1253813 1254661 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: azc:AZC_4469 SpoU rRNA methylase family protein; tRNA/rRNA methyltransferase SpoU 1253813..1254661 Jonesia denitrificans DSM 20603 8380357 YP_003161140.1 CDS Jden_1181 NC_013174.1 1254874 1255647 D PFAM: hydroxyethylthiazole kinase; KEGG: spe:Spro_3578 hydroxyethylthiazole kinase; Hydroxyethylthiazole kinase 1254874..1255647 Jonesia denitrificans DSM 20603 8380358 YP_003161141.1 CDS Jden_1182 NC_013174.1 1255644 1256390 D PFAM: thiamine monophosphate synthase; KEGG: rsp:RSP_0648 thiamine-phosphate pyrophosphorylase; thiamine-phosphate diphosphorylase 1255644..1256390 Jonesia denitrificans DSM 20603 8380359 YP_003161142.1 CDS Jden_1183 NC_013174.1 1256387 1257943 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; TENA/THI-4 domain protein; KEGG: mpo:Mpop_4984 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1256387..1257943 Jonesia denitrificans DSM 20603 8380360 YP_003161143.1 CDS Jden_1184 NC_013174.1 1257940 1258482 R PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2511 acetyltransferase; N-acetyltransferase GCN5 complement(1257940..1258482) Jonesia denitrificans DSM 20603 8380361 YP_003161144.1 CDS Jden_1185 NC_013174.1 1258670 1259398 D KEGG: btr:Btr_2129 hypothetical protein; hypothetical protein 1258670..1259398 Jonesia denitrificans DSM 20603 8380362 YP_003161145.1 CDS Jden_1186 NC_013174.1 1259391 1261040 D KEGG: nwi:Nwi_2256 hypothetical protein; nucleotidyltransferase/DNA polymerase involved in DNA repair 1259391..1261040 Jonesia denitrificans DSM 20603 8380363 YP_003161146.1 CDS Jden_1187 NC_013174.1 1261033 1264314 D KEGG: hha:Hhal_0463 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1261033..1264314 Jonesia denitrificans DSM 20603 8380364 YP_003161147.1 CDS Jden_1188 NC_013174.1 1264351 1265403 D PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll6376 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1264351..1265403 Jonesia denitrificans DSM 20603 8380365 YP_003161148.1 CDS Jden_1189 NC_013174.1 1265469 1266308 D PFAM: beta-lactamase; KEGG: gme:Gmet_0954 beta-lactamase; beta-lactamase 1265469..1266308 Jonesia denitrificans DSM 20603 8380366 YP_003161149.1 CDS Jden_1190 NC_013174.1 1266271 1267527 R PFAM: ROK family protein; KEGG: sil:SPO0860 xylose repressor, putative; ROK family protein complement(1266271..1267527) Jonesia denitrificans DSM 20603 8380367 YP_003161150.1 CDS Jden_1191 NC_013174.1 1268025 1270142 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xcb:XC_2826 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 1268025..1270142 Jonesia denitrificans DSM 20603 8381771 YP_003161151.1 CDS Jden_1192 NC_013174.1 1270234 1271553 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_4600 peptidase M20; peptidase M20 1270234..1271553 Jonesia denitrificans DSM 20603 8380369 YP_003161152.1 CDS Jden_1193 NC_013174.1 1271629 1271925 D KEGG: GF17318 gene product from transcript GF17318- RA; hypothetical protein 1271629..1271925 Jonesia denitrificans DSM 20603 8380370 YP_003161153.1 CDS Jden_1194 NC_013174.1 1272007 1272876 D KEGG: atc:AGR_C_1833 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 1272007..1272876 Jonesia denitrificans DSM 20603 8380371 YP_003161154.1 CDS Jden_1195 NC_013174.1 1272873 1274144 D KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase; TIGRFAM: cysteine/1-D-myo-inosityl 2-amino-2-deoxy- alpha-D-glucopyranoside ligase; PFAM: Cysteinyl-tRNA synthetase class Ia; cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase 1272873..1274144 Jonesia denitrificans DSM 20603 8380372 YP_003161155.1 CDS Jden_1196 NC_013174.1 1274176 1275066 R PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein; hypothetical protein complement(1274176..1275066) Jonesia denitrificans DSM 20603 8380373 YP_003161156.1 CDS Jden_1197 NC_013174.1 1275127 1275804 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0436 2-deoxyglucose-6-phosphatase; HAD-superfamily hydrolase 1275127..1275804 Jonesia denitrificans DSM 20603 8380374 YP_003161157.1 CDS Jden_1198 NC_013174.1 1275748 1276644 R KEGG: hypothetical protein; recombinase B complement(1275748..1276644) Jonesia denitrificans DSM 20603 8380375 YP_003161158.1 CDS Jden_1199 NC_013174.1 1276700 1277809 D PFAM: peptidase M50; KEGG: sil:SPO1636 SREBP protease; peptidase M50 1276700..1277809 Jonesia denitrificans DSM 20603 8380376 YP_003161159.1 CDS Jden_1200 NC_013174.1 1277833 1278858 D PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: sfu:Sfum_2514 SAM-dependent methyltransferase; tRNA methyltransferase complex GCD14 subunit 1277833..1278858 Jonesia denitrificans DSM 20603 8380377 YP_003161160.1 CDS Jden_1201 NC_013174.1 1278922 1280574 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gur:Gura_2842 AAA family ATPase, CDC48 subfamily protein; ATPase AAA 1278922..1280574 Jonesia denitrificans DSM 20603 8380378 YP_003161161.1 CDS Jden_1202 NC_013174.1 1280614 1282245 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; hypothetical protein 1280614..1282245 Jonesia denitrificans DSM 20603 8380379 YP_003161162.1 CDS Jden_1203 NC_013174.1 1282334 1282531 D PFAM: protein of unknown function DUF797; hypothetical protein 1282334..1282531 Jonesia denitrificans DSM 20603 8380380 YP_003161163.1 CDS Jden_1204 NC_013174.1 1282528 1283436 D PFAM: 20S proteasome A and B subunits; KEGG: Hypothetical protein CBG13586; K02738 20S proteasome subunit beta 1; 20S proteasome A and B subunits 1282528..1283436 Jonesia denitrificans DSM 20603 8380381 YP_003161164.1 CDS Jden_1205 NC_013174.1 1283433 1284143 D PFAM: 20S proteasome A and B subunits; 20S proteasome A and B subunits 1283433..1284143 Jonesia denitrificans DSM 20603 8380382 YP_003161165.1 CDS Jden_1206 NC_013174.1 1284140 1285519 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; hypothetical protein 1284140..1285519 Jonesia denitrificans DSM 20603 8380383 YP_003161166.1 CDS Jden_1207 NC_013174.1 1285573 1286481 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gbm:Gbem_1109 peptidylprolyl isomerase FKBP- type; FKBP-type peptidylprolyl isomerase 1285573..1286481 Jonesia denitrificans DSM 20603 8380384 YP_003161167.1 CDS Jden_1208 NC_013174.1 1286494 1287267 D TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: csa:Csal_0516 imidazole glycerol phosphate synthase subunit HisF; Imidazole glycerol phosphate synthase cyclase subunit 1286494..1287267 Jonesia denitrificans DSM 20603 8380385 YP_003161168.1 CDS Jden_1209 NC_013174.1 1287339 1289093 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rde:RD1_1749 efflux ABC transporter, transmembrane ATP-binding protein , putative; ABC transporter 1287339..1289093 Jonesia denitrificans DSM 20603 8380386 YP_003161169.1 CDS Jden_1210 NC_013174.1 1289090 1290937 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ABC transporter related; ABC transporter 1289090..1290937 Jonesia denitrificans DSM 20603 8380387 YP_003161170.1 CDS Jden_1211 NC_013174.1 1290934 1291314 D PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: abo:ABO_2134 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 1290934..1291314 Jonesia denitrificans DSM 20603 8380388 YP_003161171.1 CDS Jden_1212 NC_013174.1 1291351 1292928 D KEGG: gsu:GSU2383 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase component I 1291351..1292928 Jonesia denitrificans DSM 20603 8380389 YP_003161172.1 CDS Jden_1213 NC_013174.1 1292925 1293530 D KEGG: hypothetical protein; hypothetical protein 1292925..1293530 Jonesia denitrificans DSM 20603 8380390 YP_003161173.1 CDS Jden_1214 NC_013174.1 1293604 1293885 D hypothetical protein 1293604..1293885 Jonesia denitrificans DSM 20603 8380391 YP_003161174.1 CDS Jden_1215 NC_013174.1 1294060 1294875 D PFAM: Indole-3-glycerol phosphate synthase; putative N-acetylmannosamine-6-phosphate epimerase; KEGG: afw:Anae109_0373 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 1294060..1294875 Jonesia denitrificans DSM 20603 8380392 YP_003161175.1 CDS Jden_1216 NC_013174.1 1294918 1296162 D KEGG: afr:AFE_2069 tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 1294918..1296162 Jonesia denitrificans DSM 20603 8380393 YP_003161176.1 CDS Jden_1217 NC_013174.1 1296159 1296983 D KEGG: gme:Gmet_2477 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1296159..1296983 Jonesia denitrificans DSM 20603 8380394 YP_003161177.1 CDS Jden_1218 NC_013174.1 1296980 1297837 D TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: bha:BH3589 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1296980..1297837 Jonesia denitrificans DSM 20603 8380395 YP_003161178.1 CDS Jden_1219 NC_013174.1 1298087 1302664 D PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: glo:Glov_3016 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 1298087..1302664 Jonesia denitrificans DSM 20603 8380396 YP_003161179.1 CDS Jden_1220 NC_013174.1 1302657 1304120 D TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sus:Acid_3815 glutamate synthase (NADH) small subunit; glutamate synthase NADH/NADPH small subunit 1302657..1304120 Jonesia denitrificans DSM 20603 8380397 YP_003161180.1 CDS Jden_1221 NC_013174.1 1304219 1305637 D KEGG: mxa:MXAN_6299 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 1304219..1305637 Jonesia denitrificans DSM 20603 8380398 YP_003161181.1 CDS Jden_1222 NC_013174.1 1305693 1306040 D hypothetical protein 1305693..1306040 Jonesia denitrificans DSM 20603 8380399 YP_003161182.1 CDS Jden_1223 NC_013174.1 1306383 1307072 D PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2822 response regulator; response regulator receiver and ANTAR domain-containing protein 1306383..1307072 Jonesia denitrificans DSM 20603 8381772 YP_003161183.1 CDS Jden_1224 NC_013174.1 1307272 1307940 D PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_0832 acetyltransferase; N-acetyltransferase GCN5 1307272..1307940 Jonesia denitrificans DSM 20603 8380401 YP_003161184.1 CDS Jden_1225 NC_013174.1 1307946 1308404 R PFAM: thioesterase superfamily protein; KEGG: pin:Ping_1451 phenylacetic acid degradation- related protein; thioesterase superfamily protein complement(1307946..1308404) Jonesia denitrificans DSM 20603 8380402 YP_003161185.1 CDS Jden_1226 NC_013174.1 1308406 1311087 D KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I 1308406..1311087 Jonesia denitrificans DSM 20603 8380403 YP_003161186.1 CDS Jden_1227 NC_013174.1 1311084 1311986 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcn:Bcen_4023 methyltransferase type 11; type 11 methyltransferase complement(1311084..1311986) Jonesia denitrificans DSM 20603 8380404 YP_003161187.1 CDS Jden_1228 NC_013174.1 1312101 1313123 D PFAM: phosphofructokinase; KEGG: mxa:MXAN_6373 6-phosphofructokinase I; 6-phosphofructokinase 1312101..1313123 Jonesia denitrificans DSM 20603 8380405 YP_003161188.1 CDS Jden_1229 NC_013174.1 1313435 1314901 D PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: dal:Dalk_0933 ribosomal protein S1; RNA binding S1 domain-containing protein 1313435..1314901 Jonesia denitrificans DSM 20603 8380406 YP_003161189.1 CDS Jden_1230 NC_013174.1 1315035 1315661 D PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: ypm:YP_2507 pyrrolidone-carboxylate peptidase; Pyroglutamyl-peptidase I 1315035..1315661 Jonesia denitrificans DSM 20603 8380407 YP_003161190.1 CDS Jden_1231 NC_013174.1 1315730 1317625 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rce:RC1_1837 ABC transporter, ATP-binding; ABC transporter complement(1315730..1317625) Jonesia denitrificans DSM 20603 8380408 YP_003161191.1 CDS Jden_1232 NC_013174.1 1317697 1318284 D KEGG: ade:Adeh_2684 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 1317697..1318284 Jonesia denitrificans DSM 20603 8380409 YP_003161192.1 CDS Jden_1233 NC_013174.1 1318647 1319984 D PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_2593 major facilitator transporter; major facilitator superfamily protein 1318647..1319984 Jonesia denitrificans DSM 20603 8380410 YP_003161193.1 CDS Jden_1234 NC_013174.1 1320029 1320883 R KEGG: bcb:BCB4264_A4356 hypothetical protein; putative transcriptional regulator complement(1320029..1320883) Jonesia denitrificans DSM 20603 8380411 YP_003161194.1 CDS Jden_1235 NC_013174.1 1321072 1324797 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: bcz:BCZK1932 respiratory nitrate reductase, alpha subunit; nitrate reductase subunit alpha 1321072..1324797 Jonesia denitrificans DSM 20603 8380412 YP_003161195.1 CDS Jden_1236 NC_013174.1 1324797 1326320 D TIGRFAM: nitrate reductase, beta subunit; KEGG: bcz:BCZK1933 respiratory nitrate reductase, beta subunit; nitrate reductase subunit beta 1324797..1326320 Jonesia denitrificans DSM 20603 8380413 YP_003161196.1 CDS Jden_1237 NC_013174.1 1326317 1327063 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: bsu:BSU37260 nitrate reductase (protein J); nitrate reductase molybdenum cofactor assembly chaperone 1326317..1327063 Jonesia denitrificans DSM 20603 8380414 YP_003161197.1 CDS Jden_1238 NC_013174.1 1327067 1327783 D KEGG: bce:BC2121 respiratory nitrate reductase gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 1327067..1327783 Jonesia denitrificans DSM 20603 8380415 YP_003161198.1 CDS Jden_1239 NC_013174.1 1327829 1329067 R PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pzu:PHZ_c0275 molybdopterin biosynthesis protein; molybdopterin binding domain-containing protein complement(1327829..1329067) Jonesia denitrificans DSM 20603 8380416 YP_003161199.1 CDS Jden_1240 NC_013174.1 1329096 1330148 D TIGRFAM: molybdenum cofactor biosynthesis protein C; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdopterin binding domain; KEGG: abc:ACICU_02122 molybdenum cofactor biosynthesis protein; molybdenum cofactor biosynthesis protein C 1329096..1330148 Jonesia denitrificans DSM 20603 8380417 YP_003161200.1 CDS Jden_1241 NC_013174.1 1330141 1330563 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bca:BCE_3580 molybdopterin converting factor, subunit 2; molybdopterin biosynthesis MoaE protein 1330141..1330563 Jonesia denitrificans DSM 20603 8380418 YP_003161201.1 CDS Jden_1242 NC_013174.1 1330560 1331621 D KEGG: sus:Acid_6425 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1330560..1331621 Jonesia denitrificans DSM 20603 8380419 YP_003161202.1 CDS Jden_1243 NC_013174.1 1331627 1331881 R hypothetical protein complement(1331627..1331881) Jonesia denitrificans DSM 20603 8380420 YP_003161203.1 CDS Jden_1244 NC_013174.1 1331884 1332153 R hypothetical protein complement(1331884..1332153) Jonesia denitrificans DSM 20603 8380421 YP_003161204.1 CDS Jden_1245 NC_013174.1 1332137 1332781 R KEGG: bcz:BCZK4514 molybdopterin-guanine dinucleotide biosynthesis protein A; Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein complement(1332137..1332781) Jonesia denitrificans DSM 20603 8380422 YP_003161205.1 CDS Jden_1246 NC_013174.1 1332778 1333893 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_04098 molybdopterin/thiamine biosynthesis family protein; UBA/THIF-type NAD/FAD binding protein complement(1332778..1333893) Jonesia denitrificans DSM 20603 8380423 YP_003161206.1 CDS Jden_1247 NC_013174.1 1333979 1336087 D KEGG: bcy:Bcer98_3710 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; excinuclease ABC subunit B 1333979..1336087 Jonesia denitrificans DSM 20603 8380424 YP_003161207.1 CDS Jden_1248 NC_013174.1 1336084 1337016 D PFAM: PfkB domain protein; KEGG: mca:MCA0970 carbohydrate kinase; PfkB domain-containing protein 1336084..1337016 Jonesia denitrificans DSM 20603 8380425 YP_003161208.1 CDS Jden_1249 NC_013174.1 1337220 1338212 D PFAM: Integral membrane protein TerC; KEGG: csa:Csal_1104 integral membrane protein TerC; integral membrane protein TerC 1337220..1338212 Jonesia denitrificans DSM 20603 8380426 YP_003161209.1 CDS Jden_1250 NC_013174.1 1338316 1338699 R PFAM: YCII-related; KEGG: mpt:Mpe_A2445 hypothetical protein; YCII-like protein complement(1338316..1338699) Jonesia denitrificans DSM 20603 8380427 YP_003161210.1 CDS Jden_1251 NC_013174.1 1338754 1341669 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A; excinuclease ABC subunit A 1338754..1341669 Jonesia denitrificans DSM 20603 8380428 YP_003161211.1 CDS Jden_1252 NC_013174.1 1341702 1343645 D KEGG: mpo:Mpop_3001 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 1341702..1343645 Jonesia denitrificans DSM 20603 8380429 YP_003161212.1 CDS Jden_1253 NC_013174.1 1343727 1344665 D PFAM: conserved hypothetical protein; KEGG: bcz:BCZK4848 hypothetical protein; hypothetical protein 1343727..1344665 Jonesia denitrificans DSM 20603 8380430 YP_003161213.1 CDS Jden_1254 NC_013174.1 1344669 1345622 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: bha:BH3568 hypothetical protein; hypothetical protein 1344669..1345622 Jonesia denitrificans DSM 20603 8380431 YP_003161214.1 CDS Jden_1255 NC_013174.1 1345662 1346642 D PFAM: protein of unknown function DUF199; KEGG: bha:BH3567 hypothetical protein; hypothetical protein 1345662..1346642 Jonesia denitrificans DSM 20603 8380432 YP_003161215.1 CDS Jden_1256 NC_013174.1 1346940 1347944 D KEGG: sus:Acid_7375 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1346940..1347944 Jonesia denitrificans DSM 20603 8380433 YP_003161216.1 CDS Jden_1257 NC_013174.1 1348075 1349274 D PFAM: phosphoglycerate kinase; KEGG: PGK1; phosphoglycerate kinase; K00927 phosphoglycerate kinase; phosphoglycerate kinase 1348075..1349274 Jonesia denitrificans DSM 20603 8380434 YP_003161217.1 CDS Jden_1258 NC_013174.1 1349299 1350081 D KEGG: bsu:BSU33920 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1349299..1350081 Jonesia denitrificans DSM 20603 8380435 YP_003161218.1 CDS Jden_1259 NC_013174.1 1350228 1350473 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pin:Ping_0814 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1350228..1350473 Jonesia denitrificans DSM 20603 8380436 YP_003161219.1 CDS Jden_1260 NC_013174.1 1350604 1351353 R TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: EMB2024 (EMBRYO DEFECTIVE 2024); catalytic; K01057 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(1350604..1351353) Jonesia denitrificans DSM 20603 8380437 YP_003161220.1 CDS Jden_1261 NC_013174.1 1351350 1352285 R KEGG: sus:Acid_5280 glucose-6-P dehydrogenase subunit-like protein; Glucose-6-P dehydrogenase subunit-like protein complement(1351350..1352285) Jonesia denitrificans DSM 20603 8380438 YP_003161221.1 CDS Jden_1262 NC_013174.1 1352306 1353847 R KEGG: scl:sce4355 hypothetical protein; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1352306..1353847) Jonesia denitrificans DSM 20603 8380439 YP_003161222.1 CDS Jden_1263 NC_013174.1 1353943 1354167 D hypothetical protein 1353943..1354167 Jonesia denitrificans DSM 20603 8380440 YP_003161223.1 CDS Jden_1264 NC_013174.1 1354109 1356229 R TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: bha:BH2352 transketolase; transketolase complement(1354109..1356229) Jonesia denitrificans DSM 20603 8380441 YP_003161224.1 CDS Jden_1265 NC_013174.1 1356590 1357588 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: maq:Maqu_0070 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 1356590..1357588 Jonesia denitrificans DSM 20603 8380442 YP_003161225.1 CDS Jden_1266 NC_013174.1 1357615 1358547 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bcr:BCAH187_A4222 integrase/recombinase XerD; tyrosine recombinase XerD 1357615..1358547 Jonesia denitrificans DSM 20603 8380443 YP_003161226.1 CDS Jden_1267 NC_013174.1 1358690 1359571 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: csa:Csal_3293 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase 1358690..1359571 Jonesia denitrificans DSM 20603 8380444 YP_003161227.1 CDS Jden_1268 NC_013174.1 1359561 1360442 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: bcr:BCAH187_A4189 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1359561..1360442 Jonesia denitrificans DSM 20603 8380445 YP_003161228.1 CDS Jden_1269 NC_013174.1 1360435 1361061 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: scl:sce2028 hypothetical protein; chromosome segregation and condensation protein ScpB 1360435..1361061 Jonesia denitrificans DSM 20603 8380446 YP_003161229.1 CDS Jden_1270 NC_013174.1 1361076 1361873 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sfu:Sfum_0683 pseudouridine synthase; pseudouridine synthase 1361076..1361873 Jonesia denitrificans DSM 20603 8380447 YP_003161230.1 CDS Jden_1271 NC_013174.1 1361904 1362614 D TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: mfa:Mfla_1072 cytidylate kinase; cytidylate kinase 1361904..1362614 Jonesia denitrificans DSM 20603 8380448 YP_003161231.1 CDS Jden_1272 NC_013174.1 1362690 1364162 D KEGG: bcb:BCB4264_A1559 ribosome-associated GTPase EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: AAA ATPase; small GTP-binding protein 1362690..1364162 Jonesia denitrificans DSM 20603 8380449 YP_003161232.1 CDS Jden_1273 NC_013174.1 1364178 1365560 D PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: UGP/PGM; UDP-Glucose- Pyrophosphorylase/Phosphoglucomutase; UTP--glucose-1-phosphate uridylyltransferase 1364178..1365560 Jonesia denitrificans DSM 20603 8380450 YP_003161233.1 CDS Jden_1274 NC_013174.1 1365868 1366506 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rfr:Rfer_3385 XRE family transcriptional regulator; XRE family transcriptional regulator 1365868..1366506 Jonesia denitrificans DSM 20603 8381773 YP_003161234.1 CDS Jden_1275 NC_013174.1 1366503 1366691 R hypothetical protein complement(1366503..1366691) Jonesia denitrificans DSM 20603 8380452 YP_003161235.1 CDS Jden_1276 NC_013174.1 1366786 1367460 R PFAM: NADPH-dependent FMN reductase; KEGG: aav:Aave_2781 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1366786..1367460) Jonesia denitrificans DSM 20603 8380453 YP_003161236.1 CDS Jden_1277 NC_013174.1 1367463 1368593 R PFAM: Luciferase-like monooxygenase; KEGG: pfo:Pfl01_0703 luciferase-like; luciferase-like monooxygenase complement(1367463..1368593) Jonesia denitrificans DSM 20603 8380454 YP_003161237.1 CDS Jden_1278 NC_013174.1 1368692 1369030 D hypothetical protein 1368692..1369030 Jonesia denitrificans DSM 20603 8380455 YP_003161238.1 CDS Jden_1279 NC_013174.1 1369043 1370050 D PFAM: integrase family protein; KEGG: cbc:CbuK_A0004 DNA integration/recombination/inversion protein; integrase family protein 1369043..1370050 Jonesia denitrificans DSM 20603 8380456 YP_003161239.1 CDS Jden_1280 NC_013174.1 1370334 1370978 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bat:BAS5046 hypothetical protein; hypothetical protein complement(1370334..1370978) Jonesia denitrificans DSM 20603 8380457 YP_003161240.1 CDS Jden_1281 NC_013174.1 1370971 1371576 R hypothetical protein complement(1370971..1371576) Jonesia denitrificans DSM 20603 8380458 YP_003161241.1 CDS Jden_1282 NC_013174.1 1371573 1372865 R PFAM: protein of unknown function DUF58; KEGG: dsh:Dshi_2905 hypothetical protein; hypothetical protein complement(1371573..1372865) Jonesia denitrificans DSM 20603 8380459 YP_003161242.1 CDS Jden_1283 NC_013174.1 1372862 1373836 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein; ATPase complement(1372862..1373836) Jonesia denitrificans DSM 20603 8380460 YP_003161243.1 CDS Jden_1284 NC_013174.1 1373833 1374321 R KEGG: hypothetical protein LOC690927; hypothetical protein complement(1373833..1374321) Jonesia denitrificans DSM 20603 8380461 YP_003161244.1 CDS Jden_1285 NC_013174.1 1374318 1375010 R hypothetical protein complement(1374318..1375010) Jonesia denitrificans DSM 20603 8380462 YP_003161245.1 CDS Jden_1286 NC_013174.1 1375040 1376164 R KEGG: bha:BH1523 hypothetical protein; hypothetical protein complement(1375040..1376164) Jonesia denitrificans DSM 20603 8380463 YP_003161246.1 CDS Jden_1287 NC_013174.1 1376222 1377226 D KEGG: acp:A2cp1_0607 putative DeoR-family transcriptional regulator; putative transcriptional regulator protein 1376222..1377226 Jonesia denitrificans DSM 20603 8380464 YP_003161247.1 CDS Jden_1288 NC_013174.1 1377219 1378202 D KEGG: mxa:MXAN_1360 hypothetical protein; hypothetical protein 1377219..1378202 Jonesia denitrificans DSM 20603 8380465 YP_003161248.1 CDS Jden_1289 NC_013174.1 1378218 1378595 D hypothetical protein 1378218..1378595 Jonesia denitrificans DSM 20603 8380466 YP_003161249.1 CDS Jden_1290 NC_013174.1 1378714 1378998 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cjd:JJD26997_0553 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit 1378714..1378998 Jonesia denitrificans DSM 20603 8380467 YP_003161250.1 CDS Jden_1291 NC_013174.1 1379097 1379855 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: xca:xccb100_4295 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 1379097..1379855 Jonesia denitrificans DSM 20603 8380468 YP_003161251.1 CDS Jden_1292 NC_013174.1 1379902 1382754 D PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: RNA helicase involved in mRNA catabolism; DEAD/DEAH box helicase 1379902..1382754 Jonesia denitrificans DSM 20603 8380469 YP_003161252.1 CDS Jden_1293 NC_013174.1 1382767 1384392 D PFAM: Amidohydrolase 3; KEGG: acp:A2cp1_2120 amidohydrolase 3; amidohydrolase 1382767..1384392 Jonesia denitrificans DSM 20603 8380470 YP_003161253.1 CDS Jden_1294 NC_013174.1 1384769 1386325 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3783 apolipoprotein N- acyltransferase; apolipoprotein N-acyltransferase 1384769..1386325 Jonesia denitrificans DSM 20603 8380471 YP_003161254.1 CDS Jden_1295 NC_013174.1 1386327 1387136 D PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_2710 glycosyl transferase family 2; family 2 glycosyl transferase 1386327..1387136 Jonesia denitrificans DSM 20603 8380472 YP_003161255.1 CDS Jden_1296 NC_013174.1 1387172 1387531 R hypothetical protein complement(1387172..1387531) Jonesia denitrificans DSM 20603 8380473 YP_003161256.1 CDS Jden_1297 NC_013174.1 1387952 1389313 D PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: rfr:Rfer_0078 phospholipase D/transphosphatidylase; phospholipase D/Transphosphatidylase 1387952..1389313 Jonesia denitrificans DSM 20603 8380474 YP_003161257.1 CDS Jden_1298 NC_013174.1 1389389 1392787 R TIGRFAM: pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; pyruvate carboxyltransferase; Conserved carboxylase region; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: PCX; pyruvate carboxylase; K01959 pyruvate carboxylase subunit A; pyruvate carboxylase complement(1389389..1392787) Jonesia denitrificans DSM 20603 8380475 YP_003161258.1 CDS Jden_1299 NC_013174.1 1393060 1393971 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: net:Neut_2435 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1393060..1393971 Jonesia denitrificans DSM 20603 8380476 YP_003161259.1 CDS Jden_1300 NC_013174.1 1394029 1394616 R SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator; transcriptional regulator, MerR family complement(1394029..1394616) Jonesia denitrificans DSM 20603 8380477 YP_003161260.1 CDS Jden_1301 NC_013174.1 1394772 1395563 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: psa:PST_1620 transcriptional regulator, MerR family; transcriptional regulator, MerR family complement(1394772..1395563) Jonesia denitrificans DSM 20603 8380478 YP_003161261.1 CDS Jden_1302 NC_013174.1 1395569 1396054 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_1361 FHA domain protein; FHA domain-containing protein complement(1395569..1396054) Jonesia denitrificans DSM 20603 8380479 YP_003161262.1 CDS Jden_1303 NC_013174.1 1396224 1397225 R PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein complement(1396224..1397225) Jonesia denitrificans DSM 20603 8380480 YP_003161263.1 CDS Jden_1304 NC_013174.1 1397233 1397565 R PFAM: protein of unknown function DUF1290; KEGG: bsu:BSU15270 small basic protein; hypothetical protein complement(1397233..1397565) Jonesia denitrificans DSM 20603 8380481 YP_003161264.1 CDS Jden_1305 NC_013174.1 1397606 1398466 R PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein complement(1397606..1398466) Jonesia denitrificans DSM 20603 8380482 YP_003161265.1 CDS Jden_1306 NC_013174.1 1398463 1399047 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_0822 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(1398463..1399047) Jonesia denitrificans DSM 20603 8380483 YP_003161266.1 CDS Jden_1307 NC_013174.1 1399347 1401320 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: xac:XAC2813 ATP-dependent RNA helicase; DEAD/DEAH box helicase 1399347..1401320 Jonesia denitrificans DSM 20603 8380484 YP_003161267.1 CDS Jden_1308 NC_013174.1 1401359 1401787 R hypothetical protein complement(1401359..1401787) Jonesia denitrificans DSM 20603 8380485 YP_003161268.1 CDS Jden_1309 NC_013174.1 1401836 1402684 R KEGG: hypothetical protein; K00765 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase complement(1401836..1402684) Jonesia denitrificans DSM 20603 8380486 YP_003161269.1 CDS Jden_1310 NC_013174.1 1402706 1402969 R TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: wsu:WS0090 putative phosphohydrolase; phosphoribosyl-ATP diphosphatase complement(1402706..1402969) Jonesia denitrificans DSM 20603 8380487 YP_003161270.1 CDS Jden_1311 NC_013174.1 1402975 1403697 R KEGG: gme:Gmet_0067 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(1402975..1403697) Jonesia denitrificans DSM 20603 8380488 YP_003161271.1 CDS Jden_1312 NC_013174.1 1403707 1405260 R PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ank:AnaeK_4081 NusB/RsmB/TIM44; Fmu (Sun) domain-containing protein complement(1403707..1405260) Jonesia denitrificans DSM 20603 8380489 YP_003161272.1 CDS Jden_1313 NC_013174.1 1405282 1406217 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: azc:AZC_0797 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1405282..1406217) Jonesia denitrificans DSM 20603 8380490 YP_003161273.1 CDS Jden_1314 NC_013174.1 1406288 1408447 R KEGG: azo:azo3978 primosomal protein N' (replication factor Y); Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein complement(1406288..1408447) Jonesia denitrificans DSM 20603 8380491 YP_003161274.1 CDS Jden_1315 NC_013174.1 1408519 1409715 R KEGG: bha:BH3300 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase complement(1408519..1409715) Jonesia denitrificans DSM 20603 8380492 YP_003161275.1 CDS Jden_1316 NC_013174.1 1409779 1411032 R KEGG: nar:Saro_0591 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(1409779..1411032) Jonesia denitrificans DSM 20603 8380493 YP_003161276.1 CDS Jden_1317 NC_013174.1 1411135 1411407 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: hch:HCH_06314 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega complement(1411135..1411407) Jonesia denitrificans DSM 20603 8380494 YP_003161277.1 CDS Jden_1318 NC_013174.1 1411519 1412070 R KEGG: gdi:GDI1132 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(1411519..1412070) Jonesia denitrificans DSM 20603 8380495 YP_003161278.1 CDS Jden_1319 NC_013174.1 1412127 1412456 R hypothetical protein complement(1412127..1412456) Jonesia denitrificans DSM 20603 8380496 YP_003161279.1 CDS Jden_1320 NC_013174.1 1412618 1413508 R TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: bqu:BQ10840 orotidine 5-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1412618..1413508) Jonesia denitrificans DSM 20603 8380497 YP_003161280.1 CDS Jden_1321 NC_013174.1 1413505 1416834 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: pla:Plav_2313 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit complement(1413505..1416834) Jonesia denitrificans DSM 20603 8380498 YP_003161281.1 CDS Jden_1322 NC_013174.1 1416842 1418086 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dol:Dole_0120 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(1416842..1418086) Jonesia denitrificans DSM 20603 8380499 YP_003161282.1 CDS Jden_1323 NC_013174.1 1418083 1418607 R hypothetical protein complement(1418083..1418607) Jonesia denitrificans DSM 20603 8380500 YP_003161283.1 CDS Jden_1324 NC_013174.1 1418604 1419968 R KEGG: scl:sce4269 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type complement(1418604..1419968) Jonesia denitrificans DSM 20603 8380501 YP_003161284.1 CDS Jden_1325 NC_013174.1 1419976 1420977 R KEGG: scl:sce3822 hypothetical protein; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase complement(1419976..1420977) Jonesia denitrificans DSM 20603 8380502 YP_003161285.1 CDS Jden_1326 NC_013174.1 1420974 1421561 R PFAM: phosphoribosyltransferase; KEGG: bha:BH2541 pyrimidine regulatory protein PyrR; uracil phosphoribosyltransferase complement(1420974..1421561) Jonesia denitrificans DSM 20603 8380503 YP_003161286.1 CDS Jden_1327 NC_013174.1 1421702 1423417 R PFAM: AMP-dependent synthetase and ligase; KEGG: bcr:BCAH187_A4654 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase complement(1421702..1423417) Jonesia denitrificans DSM 20603 8380504 YP_003161287.1 CDS Jden_1328 NC_013174.1 1423549 1423965 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: gsu:GSU1692 N utilization substance protein B; NusB antitermination factor complement(1423549..1423965) Jonesia denitrificans DSM 20603 8380505 YP_003161288.1 CDS Jden_1329 NC_013174.1 1423967 1424530 R TIGRFAM: translation elongation factor P; PFAM: Elongation factor KOW domain protein; Elongation factor P; Elongation factor P/YeiP protein; KEGG: bcy:Bcer98_2891 elongation factor P; translation elongation factor P complement(1423967..1424530) Jonesia denitrificans DSM 20603 8380506 YP_003161289.1 CDS Jden_1330 NC_013174.1 1424697 1425563 D hypothetical protein 1424697..1425563 Jonesia denitrificans DSM 20603 8380507 YP_003161290.1 CDS Jden_1331 NC_013174.1 1425577 1425972 R KEGG: cak:Caul_4167 hypothetical protein; hypothetical protein complement(1425577..1425972) Jonesia denitrificans DSM 20603 8380508 YP_003161291.1 CDS Jden_1332 NC_013174.1 1425976 1426641 R KEGG: bbr:BB0638 putative amidase; hypothetical protein complement(1425976..1426641) Jonesia denitrificans DSM 20603 8380509 YP_003161292.1 CDS Jden_1333 NC_013174.1 1426752 1427177 R PFAM: dehydroquinase class II; KEGG: mno:Mnod_0123 3-dehydroquinate dehydratase, type II; 3-dehydroquinate dehydratase complement(1426752..1427177) Jonesia denitrificans DSM 20603 8380510 YP_003161293.1 CDS Jden_1334 NC_013174.1 1427188 1428330 R KEGG: aav:Aave_1003 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1427188..1428330) Jonesia denitrificans DSM 20603 8380511 YP_003161294.1 CDS Jden_1335 NC_013174.1 1428327 1428872 R PFAM: shikimate kinase; KEGG: mmw:Mmwyl1_4117 shikimate kinase; shikimate kinase complement(1428327..1428872) Jonesia denitrificans DSM 20603 8380512 YP_003161295.1 CDS Jden_1336 NC_013174.1 1428872 1430086 R KEGG: sus:Acid_2745 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase complement(1428872..1430086) Jonesia denitrificans DSM 20603 8380513 YP_003161296.1 CDS Jden_1337 NC_013174.1 1430218 1431036 R KEGG: similar to mucin 17; hypothetical protein complement(1430218..1431036) Jonesia denitrificans DSM 20603 8380514 YP_003161297.1 CDS Jden_1338 NC_013174.1 1431020 1431748 R hypothetical protein complement(1431020..1431748) Jonesia denitrificans DSM 20603 8380515 YP_003161298.1 CDS Jden_1339 NC_013174.1 1431745 1432806 R TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA; KEGG: ank:AnaeK_0675 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(1431745..1432806) Jonesia denitrificans DSM 20603 8380516 YP_003161299.1 CDS Jden_1340 NC_013174.1 1432898 1433722 R PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ppd:Ppro_0982 prepilin peptidase; peptidase A24A domain-containing protein complement(1432898..1433722) Jonesia denitrificans DSM 20603 8380517 YP_003161300.1 CDS Jden_1341 NC_013174.1 1433728 1435353 R hypothetical protein complement(1433728..1435353) Jonesia denitrificans DSM 20603 8380518 YP_003161301.1 CDS Jden_1342 NC_013174.1 1435350 1435982 R hypothetical protein complement(1435350..1435982) Jonesia denitrificans DSM 20603 8380519 YP_003161302.1 CDS Jden_1343 NC_013174.1 1435979 1437979 R KEGG: hch:HCH_03195 RTX toxins and related Ca2+- binding protein; hypothetical protein complement(1435979..1437979) Jonesia denitrificans DSM 20603 8380520 YP_003161303.1 CDS Jden_1344 NC_013174.1 1438184 1438579 R KEGG: ppd:Ppro_1656 pilin domain-containing protein; hypothetical protein complement(1438184..1438579) Jonesia denitrificans DSM 20603 8380521 YP_003161304.1 CDS Jden_1345 NC_013174.1 1438741 1439973 R PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC; type II secretion system protein complement(1438741..1439973) Jonesia denitrificans DSM 20603 8380522 YP_003161305.1 CDS Jden_1346 NC_013174.1 1439973 1441673 R KEGG: mxa:MXAN_5787 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(1439973..1441673) Jonesia denitrificans DSM 20603 8380523 YP_003161306.1 CDS Jden_1347 NC_013174.1 1441762 1443432 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB; type II secretion system protein E complement(1441762..1443432) Jonesia denitrificans DSM 20603 8380524 YP_003161307.1 CDS Jden_1348 NC_013174.1 1443540 1444370 R PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: sat:SYN_01937 shikimate 5-dehydrogenase; shikimate dehydrogenase complement(1443540..1444370) Jonesia denitrificans DSM 20603 8380525 YP_003161308.1 CDS Jden_1349 NC_013174.1 1444367 1445560 R PFAM: aminodeoxychorismate lyase; KEGG: hip:CGSHiEE_00705 pyrimidine regulatory protein PyrR; aminodeoxychorismate lyase complement(1444367..1445560) Jonesia denitrificans DSM 20603 8380526 YP_003161309.1 CDS Jden_1350 NC_013174.1 1445728 1446231 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: azc:AZC_2840 Holliday junction resolvase; Holliday junction resolvase YqgF complement(1445728..1446231) Jonesia denitrificans DSM 20603 8380527 YP_003161310.1 CDS Jden_1351 NC_013174.1 1446235 1448922 R KEGG: afr:AFE_0934 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase complement(1446235..1448922) Jonesia denitrificans DSM 20603 8380528 YP_003161311.1 CDS Jden_1352 NC_013174.1 1449071 1449427 R hypothetical protein complement(1449071..1449427) Jonesia denitrificans DSM 20603 8380529 YP_003161312.1 CDS Jden_1353 NC_013174.1 1449424 1449804 R hypothetical protein complement(1449424..1449804) Jonesia denitrificans DSM 20603 8380530 YP_003161313.1 CDS Jden_1354 NC_013174.1 1449956 1450582 R KEGG: bcy:Bcer98_3327 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(1449956..1450582) Jonesia denitrificans DSM 20603 8380531 YP_003161314.1 CDS Jden_1355 NC_013174.1 1450869 1451543 D KEGG: hch:HCH_06560 ribokinase family sugar kinase; ribokinase family sugar kinase 1450869..1451543 Jonesia denitrificans DSM 20603 8380532 YP_003161315.1 CDS Jden_1356 NC_013174.1 1451540 1452934 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_2242 recombination factor protein RarA; ATPase AAA complement(1451540..1452934) Jonesia denitrificans DSM 20603 8380533 YP_003161316.1 CDS Jden_1357 NC_013174.1 1452939 1453676 R KEGG: aeh:Mlg_0745 NUDIX hydrolase; NUDIX hydrolase complement(1452939..1453676) Jonesia denitrificans DSM 20603 8380534 YP_003161317.1 CDS Jden_1358 NC_013174.1 1453793 1454026 R hypothetical protein complement(1453793..1454026) Jonesia denitrificans DSM 20603 8380535 YP_003161318.1 CDS Jden_1359 NC_013174.1 1453986 1455764 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tbd:Tbd_0442 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1453986..1455764) Jonesia denitrificans DSM 20603 8380536 YP_003161319.1 CDS Jden_1360 NC_013174.1 1455838 1457217 R KEGG: xac:XAC1826 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(1455838..1457217) Jonesia denitrificans DSM 20603 8380537 YP_003161320.1 CDS Jden_1361 NC_013174.1 1457531 1458982 D PFAM: protein of unknown function DUF349; KEGG: hypothetical protein; hypothetical protein 1457531..1458982 Jonesia denitrificans DSM 20603 8380538 YP_003161321.1 CDS Jden_1362 NC_013174.1 1459099 1459743 D hypothetical protein 1459099..1459743 Jonesia denitrificans DSM 20603 8380539 YP_003161322.1 CDS Jden_1363 NC_013174.1 1459730 1462144 R KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(1459730..1462144) Jonesia denitrificans DSM 20603 8380540 YP_003161323.1 CDS Jden_1364 NC_013174.1 1462227 1462763 R KEGG: mca:MCA0816 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase complement(1462227..1462763) Jonesia denitrificans DSM 20603 8380541 YP_003161324.1 CDS Jden_1365 NC_013174.1 1462763 1463863 R TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: pub:SAR11_0981 preprotein translocase chain SecF; protein-export membrane protein SecF complement(1462763..1463863) Jonesia denitrificans DSM 20603 8380542 YP_003161325.1 CDS Jden_1366 NC_013174.1 1463867 1465729 R TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: bra:BRADO4035 preprotein translocase subunit SecD; protein-export membrane protein SecD complement(1463867..1465729) Jonesia denitrificans DSM 20603 8380543 YP_003161326.1 CDS Jden_1367 NC_013174.1 1465783 1466172 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: xfa:XF0224 preprotein translocase subunit YajC; preprotein translocase subunit YajC complement(1465783..1466172) Jonesia denitrificans DSM 20603 8380544 YP_003161327.1 CDS Jden_1368 NC_013174.1 1466263 1467321 R KEGG: glo:Glov_2173 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB complement(1466263..1467321) Jonesia denitrificans DSM 20603 8380545 YP_003161328.1 CDS Jden_1369 NC_013174.1 1467314 1467931 R KEGG: abb:ABBFA_000893 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA complement(1467314..1467931) Jonesia denitrificans DSM 20603 8380546 YP_003161329.1 CDS Jden_1370 NC_013174.1 1468022 1468594 R KEGG: aba:Acid345_3618 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC complement(1468022..1468594) Jonesia denitrificans DSM 20603 8380547 YP_003161330.1 CDS Jden_1371 NC_013174.1 1468600 1469358 R PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein; hypothetical protein complement(1468600..1469358) Jonesia denitrificans DSM 20603 8380548 YP_003161331.1 CDS Jden_1372 NC_013174.1 1469442 1469960 R PFAM: NUDIX hydrolase; KEGG: sea:SeAg_B4799 NUDIX hydrolase; NUDIX hydrolase complement(1469442..1469960) Jonesia denitrificans DSM 20603 8380549 YP_003161332.1 CDS Jden_1373 NC_013174.1 1469957 1470622 R hypothetical protein complement(1469957..1470622) Jonesia denitrificans DSM 20603 8380550 YP_003161333.1 CDS Jden_1374 NC_013174.1 1470619 1471821 R PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase; group 1 glycosyl transferase complement(1470619..1471821) Jonesia denitrificans DSM 20603 8380551 YP_003161334.1 CDS Jden_1375 NC_013174.1 1471814 1472770 R PFAM: lipid A biosynthesis acyltransferase; KEGG: pla:Plav_0623 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(1471814..1472770) Jonesia denitrificans DSM 20603 8380552 YP_003161335.1 CDS Jden_1376 NC_013174.1 1472767 1473390 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: afw:Anae109_2785 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(1472767..1473390) Jonesia denitrificans DSM 20603 8380553 YP_003161336.1 CDS Jden_1377 NC_013174.1 1473412 1473966 R PFAM: histidine triad (HIT) protein; KEGG: dvm:DvMF_0357 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1473412..1473966) Jonesia denitrificans DSM 20603 8380554 YP_003161337.1 CDS Jden_1378 NC_013174.1 1474023 1476044 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: mgm:Mmc1_0363 threonyl-tRNA synthetase; threonyl-tRNA synthetase complement(1474023..1476044) Jonesia denitrificans DSM 20603 8380555 YP_003161338.1 CDS Jden_1379 NC_013174.1 1476120 1476314 R hypothetical protein complement(1476120..1476314) Jonesia denitrificans DSM 20603 8380556 YP_003161339.1 CDS Jden_1380 NC_013174.1 1476568 1477911 R KEGG: smd:Smed_4097 hypothetical protein; hypothetical protein complement(1476568..1477911) Jonesia denitrificans DSM 20603 8381774 YP_003161340.1 CDS Jden_1381 NC_013174.1 1478197 1480152 D KEGG: cja:CJA_2611 endo-chitinase, putative, chi18D; PFAM: glycoside hydrolase family 18; chitin-binding domain 3 protein; Carbohydrate-binding family V/XII; SMART: chitinase II; Carbohydrate-binding family V/XII; chitinase 1478197..1480152 Jonesia denitrificans DSM 20603 8380558 YP_003161341.1 CDS Jden_1382 NC_013174.1 1480716 1481837 D PFAM: Chorismate binding-like; KEGG: met:M446_0053 para-aminobenzoate synthase, subunit I; chorismate-binding protein 1480716..1481837 Jonesia denitrificans DSM 20603 8381777 YP_003161342.1 CDS Jden_1383 NC_013174.1 1481834 1482664 D PFAM: aminotransferase class IV; KEGG: pla:Plav_1562 aminotransferase class IV; class IV aminotransferase 1481834..1482664 Jonesia denitrificans DSM 20603 8380560 YP_003161343.1 CDS Jden_1387 NC_013174.1 1484249 1484950 R hypothetical protein complement(1484249..1484950) Jonesia denitrificans DSM 20603 8381781 YP_003161344.1 CDS Jden_1388 NC_013174.1 1485209 1486267 R PFAM: AFG1-family ATPase; KEGG: aci:ACIAD2336 putative ATPase; AFG1 family ATPase complement(1485209..1486267) Jonesia denitrificans DSM 20603 8380562 YP_003161345.1 CDS Jden_1389 NC_013174.1 1486358 1487143 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: aeh:Mlg_1360 pyrimidine reductase, riboflavin biosynthesis, RibD; bifunctional deaminase-reductase domain-containing protein 1486358..1487143 Jonesia denitrificans DSM 20603 8380563 YP_003161346.1 CDS Jden_1390 NC_013174.1 1487206 1488447 R KEGG: bac:BamMC406_1119 ATP-grasp enzyme-like protein; putative ATP-grasp protein complement(1487206..1488447) Jonesia denitrificans DSM 20603 8380564 YP_003161347.1 CDS Jden_1391 NC_013174.1 1488572 1489144 D hypothetical protein 1488572..1489144 Jonesia denitrificans DSM 20603 8380565 YP_003161348.1 CDS Jden_1392 NC_013174.1 1489166 1490386 D PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: dol:Dole_3191 3'-5' exonuclease; 3'-5' exonuclease 1489166..1490386 Jonesia denitrificans DSM 20603 8380566 YP_003161349.1 CDS Jden_1393 NC_013174.1 1490397 1491392 D KEGG: mch:Mchl_5045 hypothetical protein; hypothetical protein 1490397..1491392 Jonesia denitrificans DSM 20603 8380567 YP_003161350.1 CDS Jden_1394 NC_013174.1 1491596 1492819 D KEGG: sfu:Sfum_1403 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1491596..1492819 Jonesia denitrificans DSM 20603 8380568 YP_003161351.1 CDS Jden_1395 NC_013174.1 1492816 1494900 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 1492816..1494900 Jonesia denitrificans DSM 20603 8380569 YP_003161352.1 CDS Jden_1396 NC_013174.1 1494985 1495200 D KEGG: gur:Gura_3296 hypothetical protein; hypothetical protein 1494985..1495200 Jonesia denitrificans DSM 20603 8380570 YP_003161353.1 CDS Jden_1397 NC_013174.1 1495282 1496214 R KEGG: rpe:RPE_3102 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme complement(1495282..1496214) Jonesia denitrificans DSM 20603 8380571 YP_003161354.1 CDS Jden_1398 NC_013174.1 1496411 1498675 R KEGG: cvi:CV_1412 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; formate acetyltransferase complement(1496411..1498675) Jonesia denitrificans DSM 20603 8380572 YP_003161355.1 CDS Jden_1399 NC_013174.1 1499016 1500932 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: bha:BH2779 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(1499016..1500932) Jonesia denitrificans DSM 20603 8380573 YP_003161356.1 CDS Jden_1400 NC_013174.1 1501124 1501435 R PFAM: branched-chain amino acid transport; KEGG: mxa:MXAN_5157 hypothetical protein; branched-chain amino acid transport complement(1501124..1501435) Jonesia denitrificans DSM 20603 8380574 YP_003161357.1 CDS Jden_1401 NC_013174.1 1501432 1502142 R PFAM: AzlC family protein; KEGG: mxa:MXAN_5158 AzlC family protein; AzlC family protein complement(1501432..1502142) Jonesia denitrificans DSM 20603 8380575 YP_003161358.1 CDS Jden_1402 NC_013174.1 1502261 1505014 R TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: eba:ebA6773 aconitate hydratase; aconitate hydratase 1 complement(1502261..1505014) Jonesia denitrificans DSM 20603 8380576 YP_003161359.1 CDS Jden_1403 NC_013174.1 1505394 1506686 R PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)- methyltransferase RumA; deoxyribonuclease/rho motif-related TRAM complement(1505394..1506686) Jonesia denitrificans DSM 20603 8380577 YP_003161360.1 CDS Jden_1404 NC_013174.1 1506694 1508730 R KEGG: bcz:BCZK1697 amino acid permease; amino acid permease complement(1506694..1508730) Jonesia denitrificans DSM 20603 8380578 YP_003161361.1 CDS Jden_1405 NC_013174.1 1508797 1509453 D PFAM: TrkA-N domain protein; KEGG: rde:RD1_2464 trk potassium uptake system protein; TrkA-N domain-containing protein 1508797..1509453 Jonesia denitrificans DSM 20603 8380579 YP_003161362.1 CDS Jden_1406 NC_013174.1 1509450 1510127 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tcx:Tcr_0187 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 1509450..1510127 Jonesia denitrificans DSM 20603 8380580 YP_003161363.1 CDS Jden_1407 NC_013174.1 1510057 1510800 R hypothetical protein complement(1510057..1510800) Jonesia denitrificans DSM 20603 8380581 YP_003161364.1 CDS Jden_1408 NC_013174.1 1510802 1511182 R PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: msu:MS1735 RecG protein; OB-fold tRNA/helicase-type nucleic acid binding-protein complement(1510802..1511182) Jonesia denitrificans DSM 20603 8380582 YP_003161365.1 CDS Jden_1409 NC_013174.1 1511183 1511884 R hypothetical protein complement(1511183..1511884) Jonesia denitrificans DSM 20603 8380583 YP_003161366.1 CDS Jden_1410 NC_013174.1 1512016 1512492 R KEGG: mag:amb0201 dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(1512016..1512492) Jonesia denitrificans DSM 20603 8380584 YP_003161367.1 CDS Jden_1411 NC_013174.1 1512541 1512837 R hypothetical protein complement(1512541..1512837) Jonesia denitrificans DSM 20603 8380585 YP_003161368.1 CDS Jden_1412 NC_013174.1 1513060 1513941 R PFAM: inositol monophosphatase; KEGG: rsq:Rsph17025_2324 inositol-phosphate phosphatase; inositol-phosphate phosphatase complement(1513060..1513941) Jonesia denitrificans DSM 20603 8380586 YP_003161369.1 CDS Jden_1413 NC_013174.1 1514084 1515331 D KEGG: hypothetical protein; hypothetical protein 1514084..1515331 Jonesia denitrificans DSM 20603 8380587 YP_003161370.1 CDS Jden_1414 NC_013174.1 1515387 1516574 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tgr:Tgr7_0170 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(1515387..1516574) Jonesia denitrificans DSM 20603 8380588 YP_003161371.1 CDS Jden_1415 NC_013174.1 1516571 1517179 R hypothetical protein complement(1516571..1517179) Jonesia denitrificans DSM 20603 8380589 YP_003161372.1 CDS Jden_1416 NC_013174.1 1517215 1519944 R PFAM: GCN5-related N-acetyltransferase; KEGG: dps:DP0658 acetyl-CoA synthetase; N-acetyltransferase GCN5 complement(1517215..1519944) Jonesia denitrificans DSM 20603 8380590 YP_003161373.1 CDS Jden_1417 NC_013174.1 1520081 1522567 D KEGG: sus:Acid_3975 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA topoisomerase 1520081..1522567 Jonesia denitrificans DSM 20603 8380591 YP_003161374.1 CDS Jden_1418 NC_013174.1 1522610 1526155 D TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: rru:Rru_A1531 methionine synthase (B12- dependent); methionine synthase 1522610..1526155 Jonesia denitrificans DSM 20603 8380592 YP_003161375.1 CDS Jden_1420 NC_013174.1 1526963 1528624 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3337 ABC transporter, ATP- binding protein; ABC transporter complement(1526963..1528624) Jonesia denitrificans DSM 20603 8381782 YP_003161376.1 CDS Jden_1421 NC_013174.1 1528608 1529573 R KEGG: hypothetical protein LOC686639; hypothetical protein complement(1528608..1529573) Jonesia denitrificans DSM 20603 8380594 YP_003161377.1 CDS Jden_1422 NC_013174.1 1529570 1530340 R hypothetical protein complement(1529570..1530340) Jonesia denitrificans DSM 20603 8380595 YP_003161378.1 CDS Jden_1423 NC_013174.1 1530366 1531418 R hypothetical protein complement(1530366..1531418) Jonesia denitrificans DSM 20603 8380596 YP_003161379.1 CDS Jden_1424 NC_013174.1 1531524 1532660 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1531524..1532660) Jonesia denitrificans DSM 20603 8380597 YP_003161380.1 CDS Jden_1425 NC_013174.1 1532657 1534828 R PFAM: DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; KEGG: bha:BH0006 DNA gyrase subunit B; DNA gyrase subunit B domain-containing protein complement(1532657..1534828) Jonesia denitrificans DSM 20603 8380598 YP_003161381.1 CDS Jden_1426 NC_013174.1 1534931 1535233 D hypothetical protein 1534931..1535233 Jonesia denitrificans DSM 20603 8380599 YP_003161382.1 CDS Jden_1427 NC_013174.1 1535363 1536877 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD; RpoD subfamily RNA polymerase sigma-70 subunit complement(1535363..1536877) Jonesia denitrificans DSM 20603 8380600 YP_003161383.1 CDS Jden_1428 NC_013174.1 1537119 1537520 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 hypothetical protein; UspA domain-containing protein complement(1537119..1537520) Jonesia denitrificans DSM 20603 8380601 YP_003161384.1 CDS Jden_1429 NC_013174.1 1537603 1538871 R hypothetical protein complement(1537603..1538871) Jonesia denitrificans DSM 20603 8380602 YP_003161385.1 CDS Jden_1430 NC_013174.1 1539038 1540144 D PFAM: Polyprenyl synthetase; KEGG: scl:sce4204 geranyltranstransferase; polyprenyl synthetase 1539038..1540144 Jonesia denitrificans DSM 20603 8380603 YP_003161386.1 CDS Jden_1431 NC_013174.1 1540169 1540588 R hypothetical protein complement(1540169..1540588) Jonesia denitrificans DSM 20603 8380604 YP_003161387.1 CDS Jden_1432 NC_013174.1 1540688 1542778 D PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bha:BH2504 serine/threonine protein kinase; serine/threonine protein kinase with PASTA sensor(s) 1540688..1542778 Jonesia denitrificans DSM 20603 8380605 YP_003161388.1 CDS Jden_1433 NC_013174.1 1542847 1544163 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pmy:Pmen_3429 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1542847..1544163) Jonesia denitrificans DSM 20603 8380606 YP_003161389.1 CDS Jden_1434 NC_013174.1 1544231 1544584 D hypothetical protein 1544231..1544584 Jonesia denitrificans DSM 20603 8380607 YP_003161390.1 CDS Jden_1437 NC_013174.1 1546460 1547815 R KEGG: psa:PST_2510 phospho-2-dehydro-3- deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1546460..1547815) Jonesia denitrificans DSM 20603 8381784 YP_003161391.1 CDS Jden_1438 NC_013174.1 1547928 1549127 R PFAM: phosphofructokinase; KEGG: mno:Mnod_0681 phosphofructokinase; phosphofructokinase complement(1547928..1549127) Jonesia denitrificans DSM 20603 8380609 YP_003161392.1 CDS Jden_1439 NC_013174.1 1549232 1550035 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gur:Gura_4298 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1549232..1550035) Jonesia denitrificans DSM 20603 8380610 YP_003161393.1 CDS Jden_1440 NC_013174.1 1550095 1550625 D hypothetical protein 1550095..1550625 Jonesia denitrificans DSM 20603 8380611 YP_003161394.1 CDS Jden_1441 NC_013174.1 1550650 1551594 R TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: mxa:MXAN_6497 glucokinase; ROK family glucokinase complement(1550650..1551594) Jonesia denitrificans DSM 20603 8380612 YP_003161395.1 CDS Jden_1442 NC_013174.1 1551755 1553566 D PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2959 putative long-chain-fatty-acid-- CoA ligase; AMP-dependent synthetase and ligase 1551755..1553566 Jonesia denitrificans DSM 20603 8380613 YP_003161396.1 CDS Jden_1443 NC_013174.1 1553690 1553971 D PFAM: regulatory protein AsnC/Lrp family; KEGG: dps:DP0751 transcription regulator; transcriptional regulator, AsnC family 1553690..1553971 Jonesia denitrificans DSM 20603 8380614 YP_003161397.1 CDS Jden_1444 NC_013174.1 1553991 1555070 R TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; KEGG: hypothetical protein; K00766 anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase complement(1553991..1555070) Jonesia denitrificans DSM 20603 8380615 YP_003161398.1 CDS Jden_1445 NC_013174.1 1555067 1555486 R KEGG: sus:Acid_3636 two component transcriptional regulator; response regulator receiver protein complement(1555067..1555486) Jonesia denitrificans DSM 20603 8380616 YP_003161399.1 CDS Jden_1446 NC_013174.1 1555835 1556476 D PFAM: cytochrome c oxidase subunit III; KEGG: oan:Oant_0050 cytochrome o ubiquinol oxidase subunit III; cytochrome c oxidase subunit III 1555835..1556476 Jonesia denitrificans DSM 20603 8380617 YP_003161400.1 CDS Jden_1447 NC_013174.1 1556487 1557341 D PFAM: cytochrome c class I; KEGG: pnu:Pnuc_0456 cytochrome c oxidase, cbb3- type, subunit III; cytochrome c class I 1556487..1557341 Jonesia denitrificans DSM 20603 8380618 YP_003161401.1 CDS Jden_1448 NC_013174.1 1557338 1558354 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll6221 Rieske iron-sulfur protein; Rieske (2Fe-2S) domain-containing protein 1557338..1558354 Jonesia denitrificans DSM 20603 8380619 YP_003161402.1 CDS Jden_1449 NC_013174.1 1558351 1559994 D PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_6208 cytochrome b/b6 domain- containing protein; cytochrome b/b6 domain-containing protein 1558351..1559994 Jonesia denitrificans DSM 20603 8380620 YP_003161403.1 CDS Jden_1450 NC_013174.1 1560175 1560795 D PFAM: manganese and iron superoxide dismutase; KEGG: hypothetical protein; K04564 superoxide dismutase, Fe-Mn family; Superoxide dismutase 1560175..1560795 Jonesia denitrificans DSM 20603 8380621 YP_003161404.1 CDS Jden_1451 NC_013174.1 1560974 1561375 R hypothetical protein complement(1560974..1561375) Jonesia denitrificans DSM 20603 8380622 YP_003161405.1 CDS Jden_1452 NC_013174.1 1561375 1563126 R KEGG: bha:BH2614 cytochrome caa3 oxidase (subunit I); TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I complement(1561375..1563126) Jonesia denitrificans DSM 20603 8380623 YP_003161406.1 CDS Jden_1453 NC_013174.1 1563126 1564025 R TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: ppr:PBPRA0167 putative cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(1563126..1564025) Jonesia denitrificans DSM 20603 8380624 YP_003161407.1 CDS Jden_1454 NC_013174.1 1564276 1565469 D PFAM: aminotransferase class V; KEGG: dds:Ddes_1075 cysteine desulfurase NifS; cysteine desulfurase 1564276..1565469 Jonesia denitrificans DSM 20603 8380625 YP_003161408.1 CDS Jden_1455 NC_013174.1 1565469 1565693 D PFAM: SirA family protein; KEGG: hha:Hhal_1218 SirA family protein; SirA family protein 1565469..1565693 Jonesia denitrificans DSM 20603 8380626 YP_003161409.1 CDS Jden_1456 NC_013174.1 1565835 1566185 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cja:CJA_0888 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly accessory protein complement(1565835..1566185) Jonesia denitrificans DSM 20603 8380627 YP_003161410.1 CDS Jden_1457 NC_013174.1 1566371 1567528 R KEGG: pen:PSEEN2878 glycerate kinase; hypothetical protein complement(1566371..1567528) Jonesia denitrificans DSM 20603 8380628 YP_003161411.1 CDS Jden_1458 NC_013174.1 1567587 1568738 D TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: aba:Acid345_4317 quinolinate synthetase; quinolinate synthetase complex subunit A 1567587..1568738 Jonesia denitrificans DSM 20603 8380629 YP_003161412.1 CDS Jden_1459 NC_013174.1 1568774 1569376 D PFAM: thioesterase superfamily protein; KEGG: bpy:Bphyt_2747 thioesterase superfamily protein; thioesterase superfamily protein 1568774..1569376 Jonesia denitrificans DSM 20603 8380630 YP_003161413.1 CDS Jden_1460 NC_013174.1 1569427 1570764 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_6011 peptidase, M20 (glutamate carboxypeptidase) family; peptidase M20 complement(1569427..1570764) Jonesia denitrificans DSM 20603 8380631 YP_003161414.1 CDS Jden_1461 NC_013174.1 1570905 1571444 D hypothetical protein 1570905..1571444 Jonesia denitrificans DSM 20603 8380632 YP_003161415.1 CDS Jden_1462 NC_013174.1 1571505 1572506 D PFAM: aldo/keto reductase; KEGG: mxa:MXAN_6482 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 1571505..1572506 Jonesia denitrificans DSM 20603 8380633 YP_003161416.1 CDS Jden_1463 NC_013174.1 1572606 1573652 R KEGG: maq:Maqu_1037 dihydroorotate oxidase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase; dihydroorotate dehydrogenase complement(1572606..1573652) Jonesia denitrificans DSM 20603 8380634 YP_003161417.1 CDS Jden_1464 NC_013174.1 1573663 1574142 R KEGG: oca:OCAR_4791 hypothetical protein; hypothetical protein complement(1573663..1574142) Jonesia denitrificans DSM 20603 8380635 YP_003161418.1 CDS Jden_1465 NC_013174.1 1574130 1574486 R hypothetical protein complement(1574130..1574486) Jonesia denitrificans DSM 20603 8380636 YP_003161419.1 CDS Jden_1466 NC_013174.1 1574541 1576013 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: afw:Anae109_0328 leucyl aminopeptidase; leucyl aminopeptidase 1574541..1576013 Jonesia denitrificans DSM 20603 8380637 YP_003161420.1 CDS Jden_1467 NC_013174.1 1576133 1576252 R hypothetical protein complement(1576133..1576252) Jonesia denitrificans DSM 20603 8380638 YP_003161421.1 CDS Jden_1468 NC_013174.1 1576407 1577240 R PFAM: Abortive infection protein; KEGG: bja:bll5096 hypothetical protein; Abortive infection protein complement(1576407..1577240) Jonesia denitrificans DSM 20603 8380639 YP_003161422.1 CDS Jden_1469 NC_013174.1 1577237 1578235 R KEGG: bam:Bamb_3325 hypothetical protein; hypothetical protein complement(1577237..1578235) Jonesia denitrificans DSM 20603 8380640 YP_003161423.1 CDS Jden_1470 NC_013174.1 1578228 1578869 R PFAM: regulatory protein TetR; KEGG: bcb:BCB4264_A4968 transcriptional regulator, TetR family domain protein; TetR family transcriptional regulator complement(1578228..1578869) Jonesia denitrificans DSM 20603 8380641 YP_003161424.1 CDS Jden_1472 NC_013174.1 1579360 1579779 D hypothetical protein 1579360..1579779 Jonesia denitrificans DSM 20603 8381785 YP_003161425.1 CDS Jden_1473 NC_013174.1 1579837 1580073 D hypothetical protein 1579837..1580073 Jonesia denitrificans DSM 20603 8380643 YP_003161426.1 CDS Jden_1474 NC_013174.1 1580483 1580821 R hypothetical protein complement(1580483..1580821) Jonesia denitrificans DSM 20603 8380644 YP_003161427.1 CDS Jden_1475 NC_013174.1 1581037 1582422 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: bcy:Bcer98_2857 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1581037..1582422 Jonesia denitrificans DSM 20603 8380645 YP_003161428.1 CDS Jden_1476 NC_013174.1 1582447 1584546 D KEGG: aba:Acid345_4350 2-oxoglutarate dehydrogenase E2 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 1582447..1584546 Jonesia denitrificans DSM 20603 8380646 YP_003161429.1 CDS Jden_1477 NC_013174.1 1584695 1585636 D PFAM: domain of unknown function DUF1731; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: dol:Dole_3066 hypothetical protein; hypothetical protein 1584695..1585636 Jonesia denitrificans DSM 20603 8380647 YP_003161430.1 CDS Jden_1478 NC_013174.1 1585633 1587006 R KEGG: GK12566 gene product from transcript GK12566- RA; hypothetical protein complement(1585633..1587006) Jonesia denitrificans DSM 20603 8380648 YP_003161431.1 CDS Jden_1479 NC_013174.1 1587079 1588125 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 Gfo/Idh/MocA family oxidoreductase; oxidoreductase domain-containing protein complement(1587079..1588125) Jonesia denitrificans DSM 20603 8380649 YP_003161432.1 CDS Jden_1480 NC_013174.1 1588154 1588912 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: gsu:GSU2434 lipoate-protein ligase B; lipoate-protein ligase B 1588154..1588912 Jonesia denitrificans DSM 20603 8380650 YP_003161433.1 CDS Jden_1481 NC_013174.1 1588923 1589942 D KEGG: mmr:Mmar10_1436 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 1588923..1589942 Jonesia denitrificans DSM 20603 8380651 YP_003161434.1 CDS Jden_1482 NC_013174.1 1589966 1590685 D hypothetical protein 1589966..1590685 Jonesia denitrificans DSM 20603 8380652 YP_003161435.1 CDS Jden_1483 NC_013174.1 1590717 1591145 R PFAM: RDD domain containing protein; RDD domain-containing protein complement(1590717..1591145) Jonesia denitrificans DSM 20603 8380653 YP_003161436.1 CDS Jden_1484 NC_013174.1 1591377 1592801 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I; glutamine synthetase, type I 1591377..1592801 Jonesia denitrificans DSM 20603 8380654 YP_003161437.1 CDS Jden_1485 NC_013174.1 1592963 1594330 D PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_2875 hypothetical protein; hypothetical protein 1592963..1594330 Jonesia denitrificans DSM 20603 8380655 YP_003161438.1 CDS Jden_1486 NC_013174.1 1594337 1597462 R PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: gme:Gmet_0071 glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase complement(1594337..1597462) Jonesia denitrificans DSM 20603 8380656 YP_003161439.1 CDS Jden_1487 NC_013174.1 1597524 1598858 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase; glutamine synthetase, type I complement(1597524..1598858) Jonesia denitrificans DSM 20603 8380657 YP_003161440.1 CDS Jden_1488 NC_013174.1 1598940 1600601 D KEGG: csa:Csal_0495 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; ExsB family protein; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase; NAD+ synthetase 1598940..1600601 Jonesia denitrificans DSM 20603 8380658 YP_003161441.1 CDS Jden_1489 NC_013174.1 1600647 1601468 D KEGG: pca:Pcar_1830 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1600647..1601468 Jonesia denitrificans DSM 20603 8380659 YP_003161442.1 CDS Jden_1490 NC_013174.1 1601532 1601723 R hypothetical protein complement(1601532..1601723) Jonesia denitrificans DSM 20603 8380660 YP_003161443.1 CDS Jden_1491 NC_013174.1 1601889 1602770 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mxa:MXAN_7084 methionine aminopeptidase; methionine aminopeptidase 1601889..1602770 Jonesia denitrificans DSM 20603 8380661 YP_003161444.1 CDS Jden_1492 NC_013174.1 1602767 1603582 D PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein; ROK family protein 1602767..1603582 Jonesia denitrificans DSM 20603 8380662 YP_003161445.1 CDS Jden_1493 NC_013174.1 1603646 1603954 R hypothetical protein complement(1603646..1603954) Jonesia denitrificans DSM 20603 8380663 YP_003161446.1 CDS Jden_1494 NC_013174.1 1604198 1604380 D hypothetical protein 1604198..1604380 Jonesia denitrificans DSM 20603 8380664 YP_003161447.1 CDS Jden_1495 NC_013174.1 1604400 1604714 R hypothetical protein complement(1604400..1604714) Jonesia denitrificans DSM 20603 8380665 YP_003161448.1 CDS Jden_1496 NC_013174.1 1605356 1606147 D PFAM: protein of unknown function DUF328; KEGG: sun:SUN_0122 hypothetical protein; hypothetical protein 1605356..1606147 Jonesia denitrificans DSM 20603 8381786 YP_003161449.1 CDS Jden_1497 NC_013174.1 1606165 1606893 R PFAM: protein of unknown function DUF164; KEGG: ade:Adeh_0722 hypothetical protein; hypothetical protein complement(1606165..1606893) Jonesia denitrificans DSM 20603 8380667 YP_003161450.1 CDS Jden_1498 NC_013174.1 1606939 1607829 R PFAM: protein of unknown function DUF34; KEGG: dps:DP0634 hypothetical protein; hypothetical protein complement(1606939..1607829) Jonesia denitrificans DSM 20603 8380668 YP_003161451.1 CDS Jden_1499 NC_013174.1 1608268 1609833 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_2421 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 1608268..1609833 Jonesia denitrificans DSM 20603 8381787 YP_003161452.1 CDS Jden_1500 NC_013174.1 1609830 1611026 D PFAM: restriction modification system DNA specificity domain; KEGG: ecg:E2348C_4609 predicted type I restriction- modification enzyme S subunit; restriction modification system DNA specificity domain-containing protein 1609830..1611026 Jonesia denitrificans DSM 20603 8380670 YP_003161453.1 CDS Jden_1501 NC_013174.1 1611023 1614127 D KEGG: vei:Veis_2424 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 1611023..1614127 Jonesia denitrificans DSM 20603 8380671 YP_003161454.1 CDS Jden_1502 NC_013174.1 1614198 1615427 D KEGG: dal:Dalk_1289 hypothetical protein; hypothetical protein 1614198..1615427 Jonesia denitrificans DSM 20603 8380672 YP_003161455.1 CDS Jden_1503 NC_013174.1 1615421 1617799 D KEGG: rme:Rmet_5563 hypothetical protein; hypothetical protein 1615421..1617799 Jonesia denitrificans DSM 20603 8380673 YP_003161456.1 CDS Jden_1505 NC_013174.1 1618093 1618359 R hypothetical protein complement(1618093..1618359) Jonesia denitrificans DSM 20603 8381788 YP_003161457.1 CDS Jden_1506 NC_013174.1 1618442 1618828 R KEGG: hne:HNE_0023 hypothetical protein; hypothetical protein complement(1618442..1618828) Jonesia denitrificans DSM 20603 8380675 YP_003161458.1 CDS Jden_1507 NC_013174.1 1618884 1619495 R PFAM: protein of unknown function DUF1349; KEGG: rle:pRL110453 hypothetical protein; hypothetical protein complement(1618884..1619495) Jonesia denitrificans DSM 20603 8380676 YP_003161459.1 CDS Jden_1508 NC_013174.1 1619524 1620171 R PFAM: regulatory protein TetR; KEGG: rle:pRL120345 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1619524..1620171) Jonesia denitrificans DSM 20603 8380677 YP_003161460.1 CDS Jden_1509 NC_013174.1 1620214 1621338 R TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: aeh:Mlg_0221 transaldolase; transaldolase complement(1620214..1621338) Jonesia denitrificans DSM 20603 8380678 YP_003161461.1 CDS Jden_1510 NC_013174.1 1621377 1621856 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: azc:AZC_1350 AhpC/TSA family protein; alkyl hydroperoxide reductase complement(1621377..1621856) Jonesia denitrificans DSM 20603 8380679 YP_003161462.1 CDS Jden_1511 NC_013174.1 1621927 1622340 R hypothetical protein complement(1621927..1622340) Jonesia denitrificans DSM 20603 8380680 YP_003161463.1 CDS Jden_1512 NC_013174.1 1622773 1625520 D TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: tgr:Tgr7_2456 pyruvate dehydrogenase (acetyl- transferring); 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 1622773..1625520 Jonesia denitrificans DSM 20603 8380681 YP_003161464.1 CDS Jden_1513 NC_013174.1 1625619 1626305 R hypothetical protein complement(1625619..1626305) Jonesia denitrificans DSM 20603 8380682 YP_003161465.1 CDS Jden_1514 NC_013174.1 1626372 1627631 D KEGG: reu:Reut_B5661 CdaR family transcriptional regulator; putative PucR family transcriptional regulator 1626372..1627631 Jonesia denitrificans DSM 20603 8380683 YP_003161466.1 CDS Jden_1515 NC_013174.1 1627802 1628743 D PFAM: Acyl transferase; KEGG: reu:Reut_A2264 [acyl-carrier-protein] S- malonyltransferase; ACP S-malonyltransferase 1627802..1628743 Jonesia denitrificans DSM 20603 8380684 YP_003161467.1 CDS Jden_1516 NC_013174.1 1628765 1629766 D KEGG: cvi:CV_3416 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-oxoacyl-ACP synthase 1628765..1629766 Jonesia denitrificans DSM 20603 8380685 YP_003161468.1 CDS Jden_1517 NC_013174.1 1629817 1630065 D PFAM: phosphopantetheine-binding; KEGG: swi:Swit_0088 acyl carrier protein; phosphopantetheine-binding protein 1629817..1630065 Jonesia denitrificans DSM 20603 8380686 YP_003161469.1 CDS Jden_1518 NC_013174.1 1630124 1631362 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cja:CJA_1678 beta-ketoacyl synthase, N- terminal domain protein; 3-oxoacyl-ACP synthase 1630124..1631362 Jonesia denitrificans DSM 20603 8380687 YP_003161470.1 CDS Jden_1519 NC_013174.1 1631474 1631974 R hypothetical protein complement(1631474..1631974) Jonesia denitrificans DSM 20603 8380688 YP_003161471.1 CDS Jden_1520 NC_013174.1 1632100 1632588 R KEGG: hha:Hhal_2323 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(1632100..1632588) Jonesia denitrificans DSM 20603 8380689 YP_003161472.1 CDS Jden_1521 NC_013174.1 1632793 1633386 D KEGG: hypothetical protein; hypothetical protein 1632793..1633386 Jonesia denitrificans DSM 20603 8381789 YP_003161473.1 CDS Jden_1522 NC_013174.1 1633716 1635620 R KEGG: glo:Glov_1014 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase DnaG DnaB-binding; DNA primase complement(1633716..1635620) Jonesia denitrificans DSM 20603 8381791 YP_003161474.1 CDS Jden_1523 NC_013174.1 1635687 1636976 R KEGG: aba:Acid345_0225 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(1635687..1636976) Jonesia denitrificans DSM 20603 8380692 YP_003161475.1 CDS Jden_1524 NC_013174.1 1637010 1638914 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: spe:Spro_1049 maltodextrin glucosidase; alpha amylase complement(1637010..1638914) Jonesia denitrificans DSM 20603 8380693 YP_003161476.1 CDS Jden_1525 NC_013174.1 1638923 1639825 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcb:BCB4264_A4117 maltosaccharide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1638923..1639825) Jonesia denitrificans DSM 20603 8380694 YP_003161477.1 CDS Jden_1526 NC_013174.1 1639827 1641431 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS2069 maltose transporter membrane protein; Fructose-bisphosphate aldolase complement(1639827..1641431) Jonesia denitrificans DSM 20603 8380695 YP_003161478.1 CDS Jden_1527 NC_013174.1 1641600 1642838 R PFAM: extracellular solute-binding protein family 1; KEGG: pmy:Pmen_3132 maltose ABC transporter periplasmic protein; extracellular solute-binding protein complement(1641600..1642838) Jonesia denitrificans DSM 20603 8380696 YP_003161479.1 CDS Jden_1528 NC_013174.1 1643161 1644231 D KEGG: bsu:BSU10840 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 1643161..1644231 Jonesia denitrificans DSM 20603 8380697 YP_003161480.1 CDS Jden_1529 NC_013174.1 1644282 1646063 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hypothetical protein; K01187 alpha- glucosidase; alpha amylase 1644282..1646063 Jonesia denitrificans DSM 20603 8380698 YP_003161481.1 CDS Jden_1530 NC_013174.1 1646183 1647325 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: hypothetical protein; nifR3 family TIM-barrel protein complement(1646183..1647325) Jonesia denitrificans DSM 20603 8380699 YP_003161482.1 CDS Jden_1531 NC_013174.1 1647463 1647864 D hypothetical protein 1647463..1647864 Jonesia denitrificans DSM 20603 8380700 YP_003161483.1 CDS Jden_1532 NC_013174.1 1647984 1649369 R TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: bba:Bd1147 glycyl-tRNA synthetase; glycyl-tRNA synthetase complement(1647984..1649369) Jonesia denitrificans DSM 20603 8380701 YP_003161484.1 CDS Jden_1533 NC_013174.1 1649540 1650466 D PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; periplasmic solute binding protein 1649540..1650466 Jonesia denitrificans DSM 20603 8380702 YP_003161485.1 CDS Jden_1534 NC_013174.1 1650463 1651242 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_2064 ABC transporter-related protein; ABC transporter 1650463..1651242 Jonesia denitrificans DSM 20603 8380703 YP_003161486.1 CDS Jden_1535 NC_013174.1 1651239 1652177 D PFAM: ABC-3 protein; KEGG: gbm:Gbem_3532 ABC-3 protein; ABC transporter 1651239..1652177 Jonesia denitrificans DSM 20603 8380704 YP_003161487.1 CDS Jden_1536 NC_013174.1 1652165 1652557 D PFAM: ferric-uptake regulator; KEGG: gsu:GSU1379 ferric uptake regulation protein Fur; ferric uptake regulator, Fur family 1652165..1652557 Jonesia denitrificans DSM 20603 8380705 YP_003161488.1 CDS Jden_1537 NC_013174.1 1652614 1653132 D KEGG: xop:PXO_02300 PAP2 superfamily protein; hypothetical protein 1652614..1653132 Jonesia denitrificans DSM 20603 8380706 YP_003161489.1 CDS Jden_1538 NC_013174.1 1653161 1653943 R KEGG: oca:OCAR_5959 di-trans,poly-cis- decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase complement(1653161..1653943) Jonesia denitrificans DSM 20603 8380707 YP_003161490.1 CDS Jden_1539 NC_013174.1 1653921 1654676 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: ank:AnaeK_2557 DNA repair protein RecO; DNA repair protein RecO complement(1653921..1654676) Jonesia denitrificans DSM 20603 8380708 YP_003161491.1 CDS Jden_1540 NC_013174.1 1654710 1656470 R KEGG: rme:Rmet_5887 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(1654710..1656470) Jonesia denitrificans DSM 20603 8380709 YP_003161492.1 CDS Jden_1541 NC_013174.1 1656751 1658577 R KEGG: ATM/ATR-like kinase; K08874 transformation/transcription domain-associated protein; hypothetical protein complement(1656751..1658577) Jonesia denitrificans DSM 20603 8380710 YP_003161493.1 CDS Jden_1542 NC_013174.1 1658660 1660399 R KEGG: AQP6; aquaporin 6, kidney specific; K09868 aquaporin-6; hypothetical protein complement(1658660..1660399) Jonesia denitrificans DSM 20603 8380711 YP_003161494.1 CDS Jden_1543 NC_013174.1 1660456 1661400 R TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bha:BH1367 Era/ThdF family GTP-binding protein; GTP-binding protein Era complement(1660456..1661400) Jonesia denitrificans DSM 20603 8380712 YP_003161495.1 CDS Jden_1544 NC_013174.1 1661412 1662737 R PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dno:DNO_0936 transporter associated domain- containing protein; hypothetical protein complement(1661412..1662737) Jonesia denitrificans DSM 20603 8380713 YP_003161496.1 CDS Jden_1545 NC_013174.1 1662742 1663197 R PFAM: protein of unknown function UPF0054; KEGG: bca:BCE_4383 putative metalloprotease; hypothetical protein complement(1662742..1663197) Jonesia denitrificans DSM 20603 8380714 YP_003161497.1 CDS Jden_1546 NC_013174.1 1663203 1664255 R PFAM: PhoH family protein; KEGG: bha:BH1361 phosphate starvation-induced protein; PhoH family protein complement(1663203..1664255) Jonesia denitrificans DSM 20603 8380715 YP_003161498.1 CDS Jden_1547 NC_013174.1 1664338 1664697 R PFAM: histidine triad (HIT) protein; KEGG: dol:Dole_2448 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1664338..1664697) Jonesia denitrificans DSM 20603 8380716 YP_003161499.1 CDS Jden_1548 NC_013174.1 1664785 1665558 R PFAM: protein of unknown function DUF558; KEGG: bmn:BMA10247_3313 hypothetical protein; hypothetical protein complement(1664785..1665558) Jonesia denitrificans DSM 20603 8380717 YP_003161500.1 CDS Jden_1549 NC_013174.1 1665565 1666683 R PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: bha:BH1348 heat-shock protein (activation of DnaK); chaperone DnaJ domain-containing protein complement(1665565..1666683) Jonesia denitrificans DSM 20603 8380718 YP_003161501.1 CDS Jden_1550 NC_013174.1 1666735 1667754 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: gme:Gmet_3534 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(1666735..1667754) Jonesia denitrificans DSM 20603 8380719 YP_003161502.1 CDS Jden_1551 NC_013174.1 1667896 1668750 D hypothetical protein 1667896..1668750 Jonesia denitrificans DSM 20603 8380720 YP_003161503.1 CDS Jden_1552 NC_013174.1 1668834 1669733 R KEGG: scl:sce8934 hypothetical protein; integral membrane protein complement(1668834..1669733) Jonesia denitrificans DSM 20603 8380721 YP_003161504.1 CDS Jden_1553 NC_013174.1 1669836 1671107 R KEGG: sfu:Sfum_1360 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(1669836..1671107) Jonesia denitrificans DSM 20603 8380722 YP_003161505.1 CDS Jden_1554 NC_013174.1 1671115 1672977 R TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bsu:BSU25510 GTP-binding protein LepA; GTP-binding protein LepA complement(1671115..1672977) Jonesia denitrificans DSM 20603 8380723 YP_003161506.1 CDS Jden_1555 NC_013174.1 1673138 1673689 D hypothetical protein 1673138..1673689 Jonesia denitrificans DSM 20603 8380724 YP_003161507.1 CDS Jden_1556 NC_013174.1 1673942 1674202 D TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: bha:BH1339 30S ribosomal protein S20; 30S ribosomal protein S20 1673942..1674202 Jonesia denitrificans DSM 20603 8380725 YP_003161508.1 CDS Jden_1557 NC_013174.1 1674315 1675025 R hypothetical protein complement(1674315..1675025) Jonesia denitrificans DSM 20603 8380726 YP_003161509.1 CDS Jden_1558 NC_013174.1 1675028 1675894 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3493 ABC transporter ATP-binding protein; ABC transporter complement(1675028..1675894) Jonesia denitrificans DSM 20603 8380727 YP_003161510.1 CDS Jden_1559 NC_013174.1 1675887 1676255 R PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH3492 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1675887..1676255) Jonesia denitrificans DSM 20603 8380728 YP_003161511.1 CDS Jden_1560 NC_013174.1 1676376 1677368 R TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: bcy:Bcer98_3050 DNA polymerase III subunit delta; DNA polymerase III subunit delta complement(1676376..1677368) Jonesia denitrificans DSM 20603 8380729 YP_003161512.1 CDS Jden_1561 NC_013174.1 1677444 1679924 R TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: afw:Anae109_2499 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein complement(1677444..1679924) Jonesia denitrificans DSM 20603 8380730 YP_003161513.1 CDS Jden_1562 NC_013174.1 1679921 1680706 R SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; helix-hairpin-helix DNA-binding class 1 complement(1679921..1680706) Jonesia denitrificans DSM 20603 8380731 YP_003161514.1 CDS Jden_1563 NC_013174.1 1680807 1681649 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: dvu:DVU1942 DAK2 and DegV domain-containing protein; degV family protein complement(1680807..1681649) Jonesia denitrificans DSM 20603 8380732 YP_003161515.1 CDS Jden_1564 NC_013174.1 1681810 1683129 D KEGG: hypothetical protein LOC100147867; hypothetical protein 1681810..1683129 Jonesia denitrificans DSM 20603 8380733 YP_003161516.1 CDS Jden_1565 NC_013174.1 1683097 1686552 R KEGG: xca:xccb100_4377 putative ATP-binding protein; hypothetical protein complement(1683097..1686552) Jonesia denitrificans DSM 20603 8380734 YP_003161517.1 CDS Jden_1566 NC_013174.1 1686539 1687228 R KEGG: xop:PXO_03538 hypothetical protein; hypothetical protein complement(1686539..1687228) Jonesia denitrificans DSM 20603 8380735 YP_003161518.1 CDS Jden_1567 NC_013174.1 1687225 1688793 R KEGG: plu:plu0106 hypothetical protein; hypothetical protein complement(1687225..1688793) Jonesia denitrificans DSM 20603 8380736 YP_003161519.1 CDS Jden_1568 NC_013174.1 1688868 1691822 R TIGRFAM: leucyl-tRNA synthetase; KEGG: hypothetical protein; K01869 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(1688868..1691822) Jonesia denitrificans DSM 20603 8380737 YP_003161520.1 CDS Jden_1569 NC_013174.1 1691883 1693109 R PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A0872 putative transport transmembrane protein; major facilitator superfamily protein complement(1691883..1693109) Jonesia denitrificans DSM 20603 8380738 YP_003161521.1 CDS Jden_1570 NC_013174.1 1693106 1693795 R PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor; DtxR family iron (metal) dependent repressor complement(1693106..1693795) Jonesia denitrificans DSM 20603 8380739 YP_003161522.1 CDS Jden_1571 NC_013174.1 1693792 1695729 R PFAM: metallophosphoesterase; metallophosphoesterase complement(1693792..1695729) Jonesia denitrificans DSM 20603 8380740 YP_003161523.1 CDS Jden_1572 NC_013174.1 1696034 1697500 D KEGG: gdi:GDI2161 malate:quinone oxidoreductase; TIGRFAM: malate/quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; FAD dependent oxidoreductase; malate/quinone oxidoreductase 1696034..1697500 Jonesia denitrificans DSM 20603 8380741 YP_003161524.1 CDS Jden_1573 NC_013174.1 1697555 1698550 D PFAM: aldo/keto reductase; KEGG: rlt:Rleg2_1253 aldo/keto reductase; aldo/keto reductase 1697555..1698550 Jonesia denitrificans DSM 20603 8380742 YP_003161525.1 CDS Jden_1574 NC_013174.1 1698572 1699201 R PFAM: thymidine kinase; KEGG: lpp:lpp0690 thymidine kinase; thymidine kinase complement(1698572..1699201) Jonesia denitrificans DSM 20603 8380743 YP_003161526.1 CDS Jden_1575 NC_013174.1 1699201 1699836 R PFAM: protein of unknown function UPF0126; KEGG: rpi:Rpic_2523 protein of unknown function UPF0126; hypothetical protein complement(1699201..1699836) Jonesia denitrificans DSM 20603 8380744 YP_003161527.1 CDS Jden_1576 NC_013174.1 1700009 1700812 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bch:Bcen2424_2054 AraC family transcriptional regulator; AraC family transcriptional regulator 1700009..1700812 Jonesia denitrificans DSM 20603 8380745 YP_003161528.1 CDS Jden_1577 NC_013174.1 1700912 1701295 D hypothetical protein 1700912..1701295 Jonesia denitrificans DSM 20603 8380746 YP_003161529.1 CDS Jden_1578 NC_013174.1 1701334 1702005 D PFAM: phospholipase/Carboxylesterase; KEGG: pfo:Pfl01_2066 phospholipase/carboxylesterase; phospholipase/Carboxylesterase 1701334..1702005 Jonesia denitrificans DSM 20603 8380747 YP_003161530.1 CDS Jden_1579 NC_013174.1 1701950 1702606 R KEGG: abo:ABO_0867 hypothetical protein; hypothetical protein complement(1701950..1702606) Jonesia denitrificans DSM 20603 8380748 YP_003161531.1 CDS Jden_1580 NC_013174.1 1702643 1703677 R KEGG: amc:MADE_03345 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(1702643..1703677) Jonesia denitrificans DSM 20603 8380749 YP_003161532.1 CDS Jden_1581 NC_013174.1 1703800 1704207 R KEGG: hch:HCH_01502 hypothetical protein; hypothetical protein complement(1703800..1704207) Jonesia denitrificans DSM 20603 8380750 YP_003161533.1 CDS Jden_1582 NC_013174.1 1704204 1704986 R PFAM: putative esterase; KEGG: bac:BamMC406_5051 putative esterase; putative esterase complement(1704204..1704986) Jonesia denitrificans DSM 20603 8380751 YP_003161534.1 CDS Jden_1583 NC_013174.1 1705152 1705979 D KEGG: dvm:DvMF_2682 membrane-bound lytic murein transglycosylase B-like protein; membrane-bound lytic murein transglycosylase B-like protein 1705152..1705979 Jonesia denitrificans DSM 20603 8380752 YP_003161535.1 CDS Jden_1584 NC_013174.1 1705993 1707891 R PFAM: glycoside hydrolase 15-related; KEGG: scl:sce1562 glycosyl hydrolase; glycoside hydrolase 15-related complement(1705993..1707891) Jonesia denitrificans DSM 20603 8380753 YP_003161536.1 CDS Jden_1585 NC_013174.1 1708004 1709362 D PFAM: glucose-6-phosphate dehydrogenase; KEGG: bvi:Bcep1808_0883 glucose-6-phosphate 1- dehydrogenase; glucose-6-phosphate dehydrogenase 1708004..1709362 Jonesia denitrificans DSM 20603 8380754 YP_003161537.1 CDS Jden_1586 NC_013174.1 1709359 1709676 D hypothetical protein 1709359..1709676 Jonesia denitrificans DSM 20603 8380755 YP_003161538.1 CDS Jden_1587 NC_013174.1 1709905 1711854 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pca:Pcar_2193 NADH oxidase; NADH:flavin oxidoreductase complement(1709905..1711854) Jonesia denitrificans DSM 20603 8380756 YP_003161539.1 CDS Jden_1588 NC_013174.1 1711886 1712104 D hypothetical protein 1711886..1712104 Jonesia denitrificans DSM 20603 8380757 YP_003161540.1 CDS Jden_1589 NC_013174.1 1712156 1714588 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mch:Mchl_1283 phosphoketolase; Fructose-6-phosphate phosphoketolase 1712156..1714588 Jonesia denitrificans DSM 20603 8380758 YP_003161541.1 CDS Jden_1590 NC_013174.1 1714668 1715528 R PFAM: protein of unknown function DUF81; KEGG: reh:H16_A3656 predicted permease; hypothetical protein complement(1714668..1715528) Jonesia denitrificans DSM 20603 8380759 YP_003161542.1 CDS Jden_1591 NC_013174.1 1715528 1716469 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1715528..1716469) Jonesia denitrificans DSM 20603 8380760 YP_003161543.1 CDS Jden_1592 NC_013174.1 1716466 1717140 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcy:Bcer98_0542 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1716466..1717140) Jonesia denitrificans DSM 20603 8380761 YP_003161544.1 CDS Jden_1593 NC_013174.1 1717212 1718048 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bsu:BSU27440 glutamine ABC transporter (glutamine-binding protein); family 3 extracellular solute-binding protein complement(1717212..1718048) Jonesia denitrificans DSM 20603 8380762 YP_003161545.1 CDS Jden_1594 NC_013174.1 1718123 1718902 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_671 putative ATP-binding component of a transport system; ABC transporter complement(1718123..1718902) Jonesia denitrificans DSM 20603 8380763 YP_003161546.1 CDS Jden_1595 NC_013174.1 1719101 1719289 D hypothetical protein 1719101..1719289 Jonesia denitrificans DSM 20603 8380764 YP_003161547.1 CDS Jden_1596 NC_013174.1 1719251 1719463 R hypothetical protein complement(1719251..1719463) Jonesia denitrificans DSM 20603 8380765 YP_003161548.1 CDS Jden_1597 NC_013174.1 1719460 1721313 R PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ank:AnaeK_3368 ferrous iron transport protein B; GTP-binding protein HSR1-related complement(1719460..1721313) Jonesia denitrificans DSM 20603 8380766 YP_003161549.1 CDS Jden_1598 NC_013174.1 1721310 1721615 R PFAM: FeoA family protein; KEGG: ank:AnaeK_3367 FeoA family protein; FeoA family protein complement(1721310..1721615) Jonesia denitrificans DSM 20603 8380767 YP_003161550.1 CDS Jden_1599 NC_013174.1 1721599 1722981 R PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sit:TM1040_2167 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1721599..1722981) Jonesia denitrificans DSM 20603 8380768 YP_003161551.1 CDS Jden_1600 NC_013174.1 1723107 1724009 D TIGRFAM: pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein; thiazole biosynthesis family protein; KEGG: pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein; pyridoxine biosynthesis protein 1723107..1724009 Jonesia denitrificans DSM 20603 8380769 YP_003161552.1 CDS Jden_1601 NC_013174.1 1724006 1724602 D PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dds:Ddes_1897 SNO glutamine amidotransferase; SNO glutamine amidotransferase 1724006..1724602 Jonesia denitrificans DSM 20603 8380770 YP_003161553.1 CDS Jden_1602 NC_013174.1 1724683 1725363 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family complement(1724683..1725363) Jonesia denitrificans DSM 20603 8380771 YP_003161554.1 CDS Jden_1603 NC_013174.1 1725360 1726772 R PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase dimerisation and phosphoacceptor region complement(1725360..1726772) Jonesia denitrificans DSM 20603 8380772 YP_003161555.1 CDS Jden_1604 NC_013174.1 1726910 1727635 D KEGG: bha:BH3064 hypothetical protein; hypothetical protein 1726910..1727635 Jonesia denitrificans DSM 20603 8380773 YP_003161556.1 CDS Jden_1605 NC_013174.1 1727748 1728191 D SMART: Rhodanese domain protein; KEGG: dvm:DvMF_2623 rhodanese domain protein; rhodanese domain-containing protein 1727748..1728191 Jonesia denitrificans DSM 20603 8380774 YP_003161557.1 CDS Jden_1606 NC_013174.1 1728242 1730755 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: pca:Pcar_0429 uncharacterized NAD(FAD)- dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1728242..1730755) Jonesia denitrificans DSM 20603 8380775 YP_003161558.1 CDS Jden_1607 NC_013174.1 1730928 1731869 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: mlo:mll5357 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 1730928..1731869 Jonesia denitrificans DSM 20603 8380776 YP_003161559.1 CDS Jden_1608 NC_013174.1 1731912 1733024 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bcy:Bcer98_3299 alanine dehydrogenase; alanine dehydrogenase 1731912..1733024 Jonesia denitrificans DSM 20603 8380777 YP_003161560.1 CDS Jden_1609 NC_013174.1 1733075 1733965 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mxa:MXAN_2251 glycine betaine/L-proline ABC transporter,periplasmic substrate-binding protein; glycine/betaine ABC transporter substrate-binding protein complement(1733075..1733965) Jonesia denitrificans DSM 20603 8380778 YP_003161561.1 CDS Jden_1610 NC_013174.1 1734049 1734936 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0486 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1734049..1734936) Jonesia denitrificans DSM 20603 8380779 YP_003161562.1 CDS Jden_1611 NC_013174.1 1734933 1736204 R KEGG: mxa:MXAN_2249 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(1734933..1736204) Jonesia denitrificans DSM 20603 8380780 YP_003161563.1 CDS Jden_1612 NC_013174.1 1736735 1738906 R TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: bcb:BCB4264_A3632 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein complement(1736735..1738906) Jonesia denitrificans DSM 20603 8380781 YP_003161564.1 CDS Jden_1613 NC_013174.1 1739062 1739349 R KEGG: smt:Smal_2108 hypothetical protein; hypothetical protein complement(1739062..1739349) Jonesia denitrificans DSM 20603 8380782 YP_003161565.1 CDS Jden_1614 NC_013174.1 1739359 1740597 R KEGG: smt:Smal_2107 hypothetical protein; hypothetical protein complement(1739359..1740597) Jonesia denitrificans DSM 20603 8380783 YP_003161566.1 CDS Jden_1615 NC_013174.1 1740758 1741999 R KEGG: smt:Smal_2106 hypothetical protein; hypothetical protein complement(1740758..1741999) Jonesia denitrificans DSM 20603 8380784 YP_003161567.1 CDS Jden_1616 NC_013174.1 1742188 1743129 D PFAM: protein of unknown function DUF808; KEGG: csa:Csal_0752 protein of unknown function DUF808; hypothetical protein 1742188..1743129 Jonesia denitrificans DSM 20603 8380785 YP_003161568.1 CDS Jden_1617 NC_013174.1 1743074 1744471 R PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bph:Bphy_5798 major facilitator transporter; major facilitator superfamily protein complement(1743074..1744471) Jonesia denitrificans DSM 20603 8380786 YP_003161569.1 CDS Jden_1618 NC_013174.1 1744617 1745297 R KEGG: noc:Noc_0498 hypothetical protein; hypothetical protein complement(1744617..1745297) Jonesia denitrificans DSM 20603 8380787 YP_003161570.1 CDS Jden_1619 NC_013174.1 1745435 1746262 R hypothetical protein complement(1745435..1746262) Jonesia denitrificans DSM 20603 8380788 YP_003161571.1 CDS Jden_1620 NC_013174.1 1746259 1746879 R hypothetical protein complement(1746259..1746879) Jonesia denitrificans DSM 20603 8380789 YP_003161572.1 CDS Jden_1621 NC_013174.1 1746952 1747506 R PFAM: Phosphoglycerate mutase; KEGG: bxe:Bxe_A0613 phosphoglycerate mutase; phosphoglycerate mutase complement(1746952..1747506) Jonesia denitrificans DSM 20603 8380790 YP_003161573.1 CDS Jden_1622 NC_013174.1 1747801 1749912 D PFAM: glycoside hydrolase family 43; SMART: LamG domain protein jellyroll fold domain protein; KEGG: bha:BH1878 hypothetical protein; glycoside hydrolase family protein 1747801..1749912 Jonesia denitrificans DSM 20603 8380791 YP_003161574.1 CDS Jden_1623 NC_013174.1 1750208 1752622 D PFAM: glycoside hydrolase family 43; SMART: LamG domain protein jellyroll fold domain protein; KEGG: bha:BH1878 hypothetical protein; glycoside hydrolase family protein 1750208..1752622 Jonesia denitrificans DSM 20603 8380792 YP_003161575.1 CDS Jden_1624 NC_013174.1 1752777 1753673 R KEGG: bps:BPSL2556 DNA polymerase/helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1752777..1753673) Jonesia denitrificans DSM 20603 8380793 YP_003161576.1 CDS Jden_1625 NC_013174.1 1753726 1754262 D KEGG: bcj:BCAS0321a hypothetical protein; hypothetical protein 1753726..1754262 Jonesia denitrificans DSM 20603 8380794 YP_003161577.1 CDS Jden_1626 NC_013174.1 1754262 1755725 D KEGG: bcj:BCAS0321a hypothetical protein; hypothetical protein 1754262..1755725 Jonesia denitrificans DSM 20603 8380795 YP_003161578.1 CDS Jden_1627 NC_013174.1 1755701 1758349 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: scl:sce2331 membrane alanyl aminopeptidase; aminopeptidase N complement(1755701..1758349) Jonesia denitrificans DSM 20603 8380796 YP_003161579.1 CDS Jden_1628 NC_013174.1 1758391 1758678 D hypothetical protein 1758391..1758678 Jonesia denitrificans DSM 20603 8380797 YP_003161580.1 CDS Jden_1629 NC_013174.1 1758696 1759514 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: psb:Psyr_2563 HAD family hydrolase; HAD-superfamily hydrolase complement(1758696..1759514) Jonesia denitrificans DSM 20603 8380798 YP_003161581.1 CDS Jden_1630 NC_013174.1 1759804 1760508 R hypothetical protein complement(1759804..1760508) Jonesia denitrificans DSM 20603 8380799 YP_003161582.1 CDS Jden_1631 NC_013174.1 1760798 1761835 R PFAM: restriction endonuclease; KEGG: rec:RHECIAT_CH0000870 probable restriction endonuclease protein; restriction endonuclease complement(1760798..1761835) Jonesia denitrificans DSM 20603 8380800 YP_003161583.1 CDS Jden_1632 NC_013174.1 1761841 1762215 R PFAM: protein of unknown function DUF1696; KEGG: mes:Meso_1246 protein of unknown function DUF1696; hypothetical protein complement(1761841..1762215) Jonesia denitrificans DSM 20603 8380801 YP_003161584.1 CDS Jden_1633 NC_013174.1 1762325 1762687 D PFAM: protein of unknown function DUF952; KEGG: rpb:RPB_4623 hypothetical protein; hypothetical protein 1762325..1762687 Jonesia denitrificans DSM 20603 8380802 YP_003161585.1 CDS Jden_1634 NC_013174.1 1762837 1764741 D SMART: AAA ATPase; KEGG: ppw:PputW619_0678 ATP/GTP-binding protein, putative; ATPase AAA 1762837..1764741 Jonesia denitrificans DSM 20603 8380803 YP_003161586.1 CDS Jden_1635 NC_013174.1 1765102 1765623 R hypothetical protein complement(1765102..1765623) Jonesia denitrificans DSM 20603 8381792 YP_003161587.1 CDS Jden_1636 NC_013174.1 1765883 1767148 D PFAM: peptidase M18 aminopeptidase I; KEGG: mxa:MXAN_2382 putative aminopeptidase 2; aspartyl aminopeptidase 1765883..1767148 Jonesia denitrificans DSM 20603 8380805 YP_003161588.1 CDS Jden_1637 NC_013174.1 1767334 1767990 D KEGG: sea:SeAg_B4282 putative cytoplasmic protein; hypothetical protein 1767334..1767990 Jonesia denitrificans DSM 20603 8380806 YP_003161589.1 CDS Jden_1638 NC_013174.1 1768022 1768825 D hypothetical protein 1768022..1768825 Jonesia denitrificans DSM 20603 8380807 YP_003161590.1 CDS Jden_1639 NC_013174.1 1768973 1769614 D KEGG: sew:SeSA_A4253 hypothetical protein; hypothetical protein 1768973..1769614 Jonesia denitrificans DSM 20603 8380808 YP_003161591.1 CDS Jden_1640 NC_013174.1 1769759 1770436 R PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A0330 phosphoglycerate mutase; phosphoglycerate mutase complement(1769759..1770436) Jonesia denitrificans DSM 20603 8380809 YP_003161592.1 CDS Jden_1641 NC_013174.1 1770446 1770871 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bha:BH1328 hypothetical protein; iojap family protein complement(1770446..1770871) Jonesia denitrificans DSM 20603 8380810 YP_003161593.1 CDS Jden_1642 NC_013174.1 1770910 1772328 R KEGG: mno:Mnod_1486 OmpA/MotB domain protein; hypothetical protein complement(1770910..1772328) Jonesia denitrificans DSM 20603 8380811 YP_003161594.1 CDS Jden_1643 NC_013174.1 1772332 1772940 R KEGG: bsu:BSU25640 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1772332..1772940) Jonesia denitrificans DSM 20603 8380812 YP_003161595.1 CDS Jden_1644 NC_013174.1 1772976 1773146 R hypothetical protein complement(1772976..1773146) Jonesia denitrificans DSM 20603 8380813 YP_003161596.1 CDS Jden_1645 NC_013174.1 1773392 1774687 R KEGG: gbm:Gbem_3778 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase complement(1773392..1774687) Jonesia denitrificans DSM 20603 8380814 YP_003161597.1 CDS Jden_1646 NC_013174.1 1774698 1776293 R KEGG: dal:Dalk_0154 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase complement(1774698..1776293) Jonesia denitrificans DSM 20603 8380815 YP_003161598.1 CDS Jden_1647 NC_013174.1 1776290 1777777 R PFAM: major facilitator superfamily MFS_1; KEGG: rce:RC1_2030 major facilitator superfamily transport protein; major facilitator superfamily protein complement(1776290..1777777) Jonesia denitrificans DSM 20603 8380816 YP_003161599.1 CDS Jden_1648 NC_013174.1 1777913 1781353 R KEGG: sus:Acid_4394 endo-1,4-beta-xylanase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: glycoside hydrolase family 10; Carbohydrate- binding CenC domain protein; Carbohydrate-binding family 9; SMART: glycoside hydrolase family 10; LPXTG-motif cell wall anchor domain-containing protein complement(1777913..1781353) Jonesia denitrificans DSM 20603 8380817 YP_003161600.1 CDS Jden_1649 NC_013174.1 1781619 1782800 R KEGG: mxa:MXAN_1357 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; glutamate 5-kinase complement(1781619..1782800) Jonesia denitrificans DSM 20603 8380818 YP_003161601.1 CDS Jden_1650 NC_013174.1 1782869 1784398 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: gsu:GSU3213 GTPase ObgE; GTP-binding protein Obg/CgtA complement(1782869..1784398) Jonesia denitrificans DSM 20603 8380819 YP_003161602.1 CDS Jden_1651 NC_013174.1 1784495 1784749 R TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: mca:MCA2247 50S ribosomal protein L27; 50S ribosomal protein L27 complement(1784495..1784749) Jonesia denitrificans DSM 20603 8380820 YP_003161603.1 CDS Jden_1652 NC_013174.1 1784821 1785129 R TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: aeh:Mlg_0845 50S ribosomal protein L21P; 50S ribosomal protein L21 complement(1784821..1785129) Jonesia denitrificans DSM 20603 8380821 YP_003161604.1 CDS Jden_1653 NC_013174.1 1785456 1788512 R TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: gsu:GSU3239 ribonuclease G; ribonuclease, Rne/Rng family complement(1785456..1788512) Jonesia denitrificans DSM 20603 8380822 YP_003161605.1 CDS Jden_1654 NC_013174.1 1789126 1790616 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bsu:BSU38760 cytochrome bd ubiquinol oxidase (subunit I); cytochrome bd ubiquinol oxidase subunit I 1789126..1790616 Jonesia denitrificans DSM 20603 8380823 YP_003161606.1 CDS Jden_1655 NC_013174.1 1790638 1791705 D KEGG: bcr:BCAH187_A2043 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 1790638..1791705 Jonesia denitrificans DSM 20603 8380824 YP_003161607.1 CDS Jden_1656 NC_013174.1 1791715 1793400 D KEGG: acr:Acry_1637 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 1791715..1793400 Jonesia denitrificans DSM 20603 8380825 YP_003161608.1 CDS Jden_1657 NC_013174.1 1793397 1795178 D KEGG: gme:Gmet_2633 ABC transporter-related protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 1793397..1795178 Jonesia denitrificans DSM 20603 8380826 YP_003161609.1 CDS Jden_1658 NC_013174.1 1795220 1796449 D PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; KEGG: reh:H16_A1985 signal transduction histidine kinase containing PAS/PAC sensor domain; GAF sensor signal transduction histidine kinase 1795220..1796449 Jonesia denitrificans DSM 20603 8380827 YP_003161610.1 CDS Jden_1659 NC_013174.1 1796459 1797082 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bsu:BSU33080 hypothetical protein; two component transcriptional regulator, LuxR family complement(1796459..1797082) Jonesia denitrificans DSM 20603 8380828 YP_003161611.1 CDS Jden_1660 NC_013174.1 1797228 1798196 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hypothetical protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1797228..1798196 Jonesia denitrificans DSM 20603 8380829 YP_003161612.1 CDS Jden_1662 NC_013174.1 1798338 1798592 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: ppd:Ppro_2447 addiction module antitoxin; Txe/YoeB family addiction module toxin complement(1798338..1798592) Jonesia denitrificans DSM 20603 8381793 YP_003161613.1 CDS Jden_1663 NC_013174.1 1798593 1798871 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sbc:SbBS512_E1214 antitoxin YefM; prevent-host-death family protein complement(1798593..1798871) Jonesia denitrificans DSM 20603 8380831 YP_003161614.1 CDS Jden_1664 NC_013174.1 1799135 1799686 D PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1868 hypothetical protein; N-acetyltransferase GCN5 1799135..1799686 Jonesia denitrificans DSM 20603 8380832 YP_003161615.1 CDS Jden_1665 NC_013174.1 1799697 1800626 R KEGG: mms:mma_3124 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase complement(1799697..1800626) Jonesia denitrificans DSM 20603 8380833 YP_003161616.1 CDS Jden_1666 NC_013174.1 1800633 1801358 R KEGG: ppd:Ppro_1778 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III complement(1800633..1801358) Jonesia denitrificans DSM 20603 8380834 YP_003161617.1 CDS Jden_1667 NC_013174.1 1801396 1801590 R TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; 50S ribosomal protein L32 complement(1801396..1801590) Jonesia denitrificans DSM 20603 8380835 YP_003161618.1 CDS Jden_1668 NC_013174.1 1801593 1802123 R PFAM: protein of unknown function DUF177; KEGG: pca:Pcar_1433 hypothetical protein; hypothetical protein complement(1801593..1802123) Jonesia denitrificans DSM 20603 8380836 YP_003161619.1 CDS Jden_1669 NC_013174.1 1802194 1802289 R hypothetical protein complement(1802194..1802289) Jonesia denitrificans DSM 20603 8380837 YP_003161620.1 CDS Jden_1670 NC_013174.1 1802291 1802803 R KEGG: acp:A2cp1_0147 methyltransferase type 11; hypothetical protein complement(1802291..1802803) Jonesia denitrificans DSM 20603 8380838 YP_003161621.1 CDS Jden_1671 NC_013174.1 1802873 1803355 R KEGG: scl:sce1714 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(1802873..1803355) Jonesia denitrificans DSM 20603 8380839 YP_003161622.1 CDS Jden_1672 NC_013174.1 1803429 1804154 D KEGG: hypothetical protein; hypothetical protein 1803429..1804154 Jonesia denitrificans DSM 20603 8380840 YP_003161623.1 CDS Jden_1673 NC_013174.1 1804139 1804714 R TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: pzu:PHZ_c3166 N6-adenine-specific methylase; methyltransferase complement(1804139..1804714) Jonesia denitrificans DSM 20603 8380841 YP_003161624.1 CDS Jden_1674 NC_013174.1 1804732 1806984 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein; KEGG: ret:RHE_CH02093 ATP-dependent DNA helicase protein; DEAD/DEAH box helicase complement(1804732..1806984) Jonesia denitrificans DSM 20603 8380842 YP_003161625.1 CDS Jden_1675 NC_013174.1 1807002 1808540 R PFAM: Dak phosphatase; KEGG: bha:BH2498 hypothetical protein; Dak phosphatase complement(1807002..1808540) Jonesia denitrificans DSM 20603 8380843 YP_003161626.1 CDS Jden_1676 NC_013174.1 1808926 1809117 D TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aba:Acid345_0165 LSU ribosomal protein L28P; 50S ribosomal protein L28 1808926..1809117 Jonesia denitrificans DSM 20603 8380844 YP_003161627.1 CDS Jden_1677 NC_013174.1 1809275 1809790 D PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce2328 putative acetyltransferase; N-acetyltransferase GCN5 1809275..1809790 Jonesia denitrificans DSM 20603 8380845 YP_003161628.1 CDS Jden_1678 NC_013174.1 1809759 1810826 R KEGG: pca:Pcar_0028 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(1809759..1810826) Jonesia denitrificans DSM 20603 8380846 YP_003161629.1 CDS Jden_1679 NC_013174.1 1810874 1811347 D hypothetical protein 1810874..1811347 Jonesia denitrificans DSM 20603 8380847 YP_003161630.1 CDS Jden_1680 NC_013174.1 1811396 1812565 R KEGG: aba:Acid345_4592 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; D-alanine--D-alanine ligase complement(1811396..1812565) Jonesia denitrificans DSM 20603 8380848 YP_003161631.1 CDS Jden_1681 NC_013174.1 1812665 1813867 D PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: dsh:Dshi_1002 cystathionine gamma-synthase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 1812665..1813867 Jonesia denitrificans DSM 20603 8380849 YP_003161632.1 CDS Jden_1682 NC_013174.1 1813836 1814867 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dvu:DVU3159 glycerol-3-phosphate dehydrogenase (NAD(P)+); glycerol-3-phosphate dehydrogenase complement(1813836..1814867) Jonesia denitrificans DSM 20603 8380850 YP_003161633.1 CDS Jden_1683 NC_013174.1 1814864 1815643 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ade:Adeh_0255 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase complement(1814864..1815643) Jonesia denitrificans DSM 20603 8380851 YP_003161634.1 CDS Jden_1684 NC_013174.1 1815659 1816978 R TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: bha:BH3749 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; UDP-N-acetylglucosamine 1- carboxyvinyltransferase complement(1815659..1816978) Jonesia denitrificans DSM 20603 8380852 YP_003161635.1 CDS Jden_1686 NC_013174.1 1819414 1820154 D PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B1874 putative transcriptional regulator, IclR; transcriptional regulator, IclR family 1819414..1820154 Jonesia denitrificans DSM 20603 8381794 YP_003161636.1 CDS Jden_1687 NC_013174.1 1820918 1821664 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bha:BH0473 hypothetical protein; HAD-superfamily hydrolase complement(1820918..1821664) Jonesia denitrificans DSM 20603 8381797 YP_003161637.1 CDS Jden_1688 NC_013174.1 1821661 1823178 R KEGG: bsu:BSU00920 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; glutamyl-tRNA synthetase complement(1821661..1823178) Jonesia denitrificans DSM 20603 8380855 YP_003161638.1 CDS Jden_1689 NC_013174.1 1823227 1824012 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce2870 fumarylacetoacetase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(1823227..1824012) Jonesia denitrificans DSM 20603 8380856 YP_003161639.1 CDS Jden_1690 NC_013174.1 1824056 1824913 R PFAM: Methyltransferase type 11; methyltransferase small; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: ubiE/COQ5 methyltransferase; type 11 methyltransferase complement(1824056..1824913) Jonesia denitrificans DSM 20603 8380857 YP_003161640.1 CDS Jden_1691 NC_013174.1 1825154 1826164 D PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase; aldo/keto reductase 1825154..1826164 Jonesia denitrificans DSM 20603 8380858 YP_003161641.1 CDS Jden_1692 NC_013174.1 1826167 1827102 D hypothetical protein 1826167..1827102 Jonesia denitrificans DSM 20603 8380859 YP_003161642.1 CDS Jden_1693 NC_013174.1 1827092 1827946 D hypothetical protein 1827092..1827946 Jonesia denitrificans DSM 20603 8380860 YP_003161643.1 CDS Jden_1694 NC_013174.1 1828009 1829490 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cvi:CV_3650 sodium/alanine symporter; amino acid carrier protein complement(1828009..1829490) Jonesia denitrificans DSM 20603 8380861 YP_003161644.1 CDS Jden_1695 NC_013174.1 1829586 1832207 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce4364 putative ATP-dependent helicase; DEAD/DEAH box helicase 1829586..1832207 Jonesia denitrificans DSM 20603 8380862 YP_003161645.1 CDS Jden_1696 NC_013174.1 1832207 1832713 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_01964 hypothetical protein; ybaK/ebsC protein 1832207..1832713 Jonesia denitrificans DSM 20603 8380863 YP_003161646.1 CDS Jden_1697 NC_013174.1 1832676 1833254 R PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3593 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 complement(1832676..1833254) Jonesia denitrificans DSM 20603 8380864 YP_003161647.1 CDS Jden_1698 NC_013174.1 1833276 1833656 R PFAM: protein of unknown function DUF307; KEGG: rce:RC1_3378 hypothetical protein; hypothetical protein complement(1833276..1833656) Jonesia denitrificans DSM 20603 8380865 YP_003161648.1 CDS Jden_1699 NC_013174.1 1833771 1834532 D PFAM: alanine racemase domain protein; KEGG: azo:azo3467 hypothetical protein; alanine racemase domain-containing protein 1833771..1834532 Jonesia denitrificans DSM 20603 8380866 YP_003161649.1 CDS Jden_1700 NC_013174.1 1834543 1835409 D hypothetical protein 1834543..1835409 Jonesia denitrificans DSM 20603 8380867 YP_003161650.1 CDS Jden_1701 NC_013174.1 1835437 1836486 R PFAM: biotin/lipoate A/B protein ligase; KEGG: ilo:IL0300 lipoate-protein ligase A; biotin/lipoate A/B protein ligase complement(1835437..1836486) Jonesia denitrificans DSM 20603 8380868 YP_003161651.1 CDS Jden_1702 NC_013174.1 1836569 1838209 R TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: scl:sce3734 putative alpha- isopropylmalate/homocitrate synthase family transferase; 2-isopropylmalate synthase complement(1836569..1838209) Jonesia denitrificans DSM 20603 8380869 YP_003161652.1 CDS Jden_1703 NC_013174.1 1838473 1839600 R KEGG: sml:Smlt0860 putative branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase complement(1838473..1839600) Jonesia denitrificans DSM 20603 8380870 YP_003161653.1 CDS Jden_1704 NC_013174.1 1839736 1840782 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sfu:Sfum_3031 isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(1839736..1840782) Jonesia denitrificans DSM 20603 8380871 YP_003161654.1 CDS Jden_1705 NC_013174.1 1841058 1841768 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_0682 ABC transporter related; ABC transporter 1841058..1841768 Jonesia denitrificans DSM 20603 8380872 YP_003161655.1 CDS Jden_1706 NC_013174.1 1841765 1843039 D hypothetical protein 1841765..1843039 Jonesia denitrificans DSM 20603 8380873 YP_003161656.1 CDS Jden_1707 NC_013174.1 1843036 1843638 D hypothetical protein 1843036..1843638 Jonesia denitrificans DSM 20603 8380874 YP_003161657.1 CDS Jden_1708 NC_013174.1 1843698 1844735 R KEGG: afw:Anae109_1879 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; CoA-binding domain protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase complement(1843698..1844735) Jonesia denitrificans DSM 20603 8380875 YP_003161658.1 CDS Jden_1709 NC_013174.1 1844779 1845306 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: glo:Glov_2502 acetolactate synthase, small subunit; acetolactate synthase small subunit complement(1844779..1845306) Jonesia denitrificans DSM 20603 8380876 YP_003161659.1 CDS Jden_1710 NC_013174.1 1845324 1847171 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: ade:Adeh_1978 acetolactate synthase, large subunit; acetolactate synthase large subunit complement(1845324..1847171) Jonesia denitrificans DSM 20603 8380877 YP_003161660.1 CDS Jden_1711 NC_013174.1 1847515 1849230 R KEGG: mca:MCA2082 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(1847515..1849230) Jonesia denitrificans DSM 20603 8380878 YP_003161661.1 CDS Jden_1712 NC_013174.1 1849277 1849849 R PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC3473 aminoglycoside N6'- acetyltransferase; N-acetyltransferase GCN5 complement(1849277..1849849) Jonesia denitrificans DSM 20603 8380879 YP_003161662.1 CDS Jden_1713 NC_013174.1 1849852 1851357 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: sus:Acid_7720 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B complement(1849852..1851357) Jonesia denitrificans DSM 20603 8380880 YP_003161663.1 CDS Jden_1714 NC_013174.1 1851354 1852868 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: mxa:MXAN_1463 glutamyl-tRNA(Gln) amidotransferase, A subunit; glutamyl-tRNA(Gln) amidotransferase subunit A complement(1851354..1852868) Jonesia denitrificans DSM 20603 8380881 YP_003161664.1 CDS Jden_1715 NC_013174.1 1852870 1853166 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: gsu:GSU3383 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(1852870..1853166) Jonesia denitrificans DSM 20603 8380882 YP_003161665.1 CDS Jden_1716 NC_013174.1 1858983 1861379 R KEGG: bac:BamMC406_1926 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase; BRCT domain protein; NAD-dependent DNA ligase complement(1858983..1861379) Jonesia denitrificans DSM 20603 8381801 YP_003161666.1 CDS Jden_1717 NC_013174.1 1861446 1863581 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sml:Smlt4084 putative exported oligopeptidase; prolyl oligopeptidase 1861446..1863581 Jonesia denitrificans DSM 20603 8380884 YP_003161667.1 CDS Jden_1718 NC_013174.1 1863578 1864006 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1863578..1864006 Jonesia denitrificans DSM 20603 8380885 YP_003161668.1 CDS Jden_1719 NC_013174.1 1864046 1865389 R PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: lpc:LPC_1067 drug:proton antiporter; major facilitator superfamily protein complement(1864046..1865389) Jonesia denitrificans DSM 20603 8380886 YP_003161669.1 CDS Jden_1720 NC_013174.1 1865393 1866451 R hypothetical protein complement(1865393..1866451) Jonesia denitrificans DSM 20603 8380887 YP_003161670.1 CDS Jden_1721 NC_013174.1 1866448 1867719 R PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; KEGG: mxa:MXAN_3499 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase complement(1866448..1867719) Jonesia denitrificans DSM 20603 8380888 YP_003161671.1 CDS Jden_1722 NC_013174.1 1867772 1869010 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A1068 aminotransferase, class V; class V aminotransferase complement(1867772..1869010) Jonesia denitrificans DSM 20603 8380889 YP_003161672.1 CDS Jden_1723 NC_013174.1 1869130 1870278 D PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase; acyl-CoA dehydrogenase type 2 domain-containing protein 1869130..1870278 Jonesia denitrificans DSM 20603 8380890 YP_003161673.1 CDS Jden_1724 NC_013174.1 1870420 1871412 R PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: afw:Anae109_3165 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(1870420..1871412) Jonesia denitrificans DSM 20603 8380891 YP_003161674.1 CDS Jden_1725 NC_013174.1 1871423 1872229 R PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit; Electron transfer flavoprotein alpha/beta- subunit complement(1871423..1872229) Jonesia denitrificans DSM 20603 8380892 YP_003161675.1 CDS Jden_1726 NC_013174.1 1872333 1874579 D KEGG: eba:ebA6923 glycogen operon protein GlgX (alpha amylase); TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1872333..1874579 Jonesia denitrificans DSM 20603 8380893 YP_003161676.1 CDS Jden_1727 NC_013174.1 1874621 1876738 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: psa:PST_2154 alpha-amylase family protein; alpha amylase 1874621..1876738 Jonesia denitrificans DSM 20603 8380894 YP_003161677.1 CDS Jden_1728 NC_013174.1 1876735 1878492 D KEGG: afw:Anae109_2968 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 1876735..1878492 Jonesia denitrificans DSM 20603 8380895 YP_003161678.1 CDS Jden_1729 NC_013174.1 1878520 1880745 D KEGG: mxa:MXAN_3682 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 1878520..1880745 Jonesia denitrificans DSM 20603 8380896 YP_003161679.1 CDS Jden_1730 NC_013174.1 1880829 1881770 R KEGG: rle:RL4571 putative thioredoxin; putative thioredoxin domain-containing protein complement(1880829..1881770) Jonesia denitrificans DSM 20603 8380897 YP_003161680.1 CDS Jden_1732 NC_013174.1 1882853 1884571 R KEGG: proteophosphoglycan ppg4; hypothetical protein complement(1882853..1884571) Jonesia denitrificans DSM 20603 8381802 YP_003161681.1 CDS Jden_1733 NC_013174.1 1884923 1887376 D KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family; hypothetical protein 1884923..1887376 Jonesia denitrificans DSM 20603 8380899 YP_003161682.1 CDS Jden_1734 NC_013174.1 1887373 1887801 D hypothetical protein 1887373..1887801 Jonesia denitrificans DSM 20603 8380900 YP_003161683.1 CDS Jden_1735 NC_013174.1 1887798 1888583 R PFAM: alpha/beta hydrolase fold protein; KEGG: ade:Adeh_3847 alpha/beta hydrolase fold protein-1; alpha/beta hydrolase fold protein complement(1887798..1888583) Jonesia denitrificans DSM 20603 8380901 YP_003161684.1 CDS Jden_1736 NC_013174.1 1888611 1888901 R hypothetical protein complement(1888611..1888901) Jonesia denitrificans DSM 20603 8380902 YP_003161685.1 CDS Jden_1737 NC_013174.1 1889011 1889988 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: csa:Csal_3141 peptidylprolyl isomerase, FKBP- type; FKBP-type peptidylprolyl isomerase 1889011..1889988 Jonesia denitrificans DSM 20603 8380903 YP_003161686.1 CDS Jden_1738 NC_013174.1 1890073 1890582 D PFAM: phosphoribosyltransferase; KEGG: afw:Anae109_4149 phosphoribosyltransferase; phosphoribosyltransferase 1890073..1890582 Jonesia denitrificans DSM 20603 8380904 YP_003161687.1 CDS Jden_1739 NC_013174.1 1890614 1891405 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dar:Daro_1740 methionine aminopeptidase; methionine aminopeptidase 1890614..1891405 Jonesia denitrificans DSM 20603 8380905 YP_003161688.1 CDS Jden_1740 NC_013174.1 1891539 1891739 R hypothetical protein complement(1891539..1891739) Jonesia denitrificans DSM 20603 8380906 YP_003161689.1 CDS Jden_1741 NC_013174.1 1891838 1892527 R PFAM: protein of unknown function DUF125 transmembrane; KEGG: pde:Pden_1253 protein of unknown function DUF125, transmembrane; hypothetical protein complement(1891838..1892527) Jonesia denitrificans DSM 20603 8380907 YP_003161690.1 CDS Jden_1742 NC_013174.1 1892634 1892987 D hypothetical protein 1892634..1892987 Jonesia denitrificans DSM 20603 8380908 YP_003161691.1 CDS Jden_1743 NC_013174.1 1893059 1893634 D PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 1893059..1893634 Jonesia denitrificans DSM 20603 8380909 YP_003161692.1 CDS Jden_1744 NC_013174.1 1893748 1894890 D PFAM: protein of unknown function DUF214; KEGG: bcb:BCB4264_A3244 putative ABC transporter, permease protein; hypothetical protein 1893748..1894890 Jonesia denitrificans DSM 20603 8380910 YP_003161693.1 CDS Jden_1745 NC_013174.1 1894887 1895576 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2944 ABC transporter, ATP-binding protein; ABC transporter 1894887..1895576 Jonesia denitrificans DSM 20603 8380911 YP_003161694.1 CDS Jden_1746 NC_013174.1 1895588 1896160 R hypothetical protein complement(1895588..1896160) Jonesia denitrificans DSM 20603 8380912 YP_003161695.1 CDS Jden_1747 NC_013174.1 1896157 1896294 R hypothetical protein complement(1896157..1896294) Jonesia denitrificans DSM 20603 8380913 YP_003161696.1 CDS Jden_1748 NC_013174.1 1896701 1899736 R PFAM: SMC domain protein; KEGG: neu:NE2310 ABC transporter; SMC domain-containing protein complement(1896701..1899736) Jonesia denitrificans DSM 20603 8380914 YP_003161697.1 CDS Jden_1751 NC_013174.1 1903379 1904356 R PFAM: ribonucleotide reductase; KEGG: rlt:Rleg2_3497 ribonucleoside-diphosphate reductase; ribonucleoside-diphosphate reductase complement(1903379..1904356) Jonesia denitrificans DSM 20603 8381804 YP_003161698.1 CDS Jden_1752 NC_013174.1 1904374 1906491 R KEGG: atc:AGR_C_106 ribonucleoside-diphosphate reductase alpha chain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(1904374..1906491) Jonesia denitrificans DSM 20603 8380916 YP_003161699.1 CDS Jden_1753 NC_013174.1 1906607 1906849 R TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein; glutaredoxin-like protein NrdH complement(1906607..1906849) Jonesia denitrificans DSM 20603 8380917 YP_003161700.1 CDS Jden_1754 NC_013174.1 1907380 1908837 R KEGG: hch:HCH_06907 beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase complement(1907380..1908837) Jonesia denitrificans DSM 20603 8380918 YP_003161701.1 CDS Jden_1755 NC_013174.1 1908997 1909884 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce0662 LacI family transcription regulator; periplasmic binding protein/LacI transcriptional regulator complement(1908997..1909884) Jonesia denitrificans DSM 20603 8380919 YP_003161702.1 CDS Jden_1756 NC_013174.1 1909979 1912621 R KEGG: manB1; beta-mannosidase protein; K01192 beta-mannosidase; Beta-mannosidase complement(1909979..1912621) Jonesia denitrificans DSM 20603 8380920 YP_003161703.1 CDS Jden_1757 NC_013174.1 1912751 1913572 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1731 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1912751..1913572) Jonesia denitrificans DSM 20603 8380921 YP_003161704.1 CDS Jden_1758 NC_013174.1 1913569 1914543 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1100 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1913569..1914543) Jonesia denitrificans DSM 20603 8380922 YP_003161705.1 CDS Jden_1759 NC_013174.1 1914685 1915995 R PFAM: extracellular solute-binding protein family 1; KEGG: cja:CJA_3468 bacterial extracellular solute- binding protein; extracellular solute-binding protein complement(1914685..1915995) Jonesia denitrificans DSM 20603 8380923 YP_003161706.1 CDS Jden_1760 NC_013174.1 1916228 1917505 D PFAM: ROK family protein; KEGG: bid:Bind_3295 ROK family protein; ROK family protein 1916228..1917505 Jonesia denitrificans DSM 20603 8380924 YP_003161707.1 CDS Jden_1761 NC_013174.1 1917584 1918558 D PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase; Acetyl xylan esterase 1917584..1918558 Jonesia denitrificans DSM 20603 8380925 YP_003161708.1 CDS Jden_1762 NC_013174.1 1918568 1919824 D PFAM: N-acylglucosamine 2-epimerase; KEGG: ppw:PputW619_4210 N-acylglucosamine 2- epimerase; N-acylglucosamine 2-epimerase 1918568..1919824 Jonesia denitrificans DSM 20603 8380926 YP_003161709.1 CDS Jden_1763 NC_013174.1 1919857 1922139 R PFAM: glycoside hydrolase family 31; KEGG: bha:BH1905 alpha-xylosidase YicI; glycoside hydrolase family protein complement(1919857..1922139) Jonesia denitrificans DSM 20603 8380927 YP_003161710.1 CDS Jden_1764 NC_013174.1 1922152 1924212 R PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase complement(1922152..1924212) Jonesia denitrificans DSM 20603 8380928 YP_003161711.1 CDS Jden_1765 NC_013174.1 1924389 1926848 D KEGG: bha:BH0842 hypothetical protein; hypothetical protein 1924389..1926848 Jonesia denitrificans DSM 20603 8380929 YP_003161712.1 CDS Jden_1766 NC_013174.1 1926835 1927857 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bvi:Bcep1808_3829 LacI family transcription regulator; transcriptional regulator, LacI family 1926835..1927857 Jonesia denitrificans DSM 20603 8380930 YP_003161713.1 CDS Jden_1767 NC_013174.1 1927958 1928965 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30170 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(1927958..1928965) Jonesia denitrificans DSM 20603 8380931 YP_003161714.1 CDS Jden_1768 NC_013174.1 1928968 1929930 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0484 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein complement(1928968..1929930) Jonesia denitrificans DSM 20603 8380932 YP_003161715.1 CDS Jden_1769 NC_013174.1 1930019 1931701 R KEGG: bsu:BSU07100 lipoprotein; hypothetical protein complement(1930019..1931701) Jonesia denitrificans DSM 20603 8380933 YP_003161716.1 CDS Jden_1770 NC_013174.1 1932036 1934885 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase; Beta-glucosidase 1932036..1934885 Jonesia denitrificans DSM 20603 8380934 YP_003161717.1 CDS Jden_1771 NC_013174.1 1935086 1935781 R PFAM: protein of unknown function DUF91; KEGG: acr:Acry_0699 RecB family-like nuclease; hypothetical protein complement(1935086..1935781) Jonesia denitrificans DSM 20603 8380935 YP_003161718.1 CDS Jden_1772 NC_013174.1 1935802 1936242 R hypothetical protein complement(1935802..1936242) Jonesia denitrificans DSM 20603 8380936 YP_003161719.1 CDS Jden_1773 NC_013174.1 1936259 1936537 R PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: abo:ABO_2725 ATP synthase, epsilon subunit; H+transporting two-sector ATPase aubunit delta/epsilon complement(1936259..1936537) Jonesia denitrificans DSM 20603 8380937 YP_003161720.1 CDS Jden_1774 NC_013174.1 1936581 1938062 R KEGG: bcy:Bcer98_3825 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(1936581..1938062) Jonesia denitrificans DSM 20603 8380938 YP_003161721.1 CDS Jden_1775 NC_013174.1 1938155 1939054 R KEGG: hch:HCH_07072 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma complement(1938155..1939054) Jonesia denitrificans DSM 20603 8380939 YP_003161722.1 CDS Jden_1776 NC_013174.1 1939058 1940689 R KEGG: eli:ELI_08770 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha complement(1939058..1940689) Jonesia denitrificans DSM 20603 8380940 YP_003161723.1 CDS Jden_1777 NC_013174.1 1940776 1941591 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: xau:Xaut_2077 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta complement(1940776..1941591) Jonesia denitrificans DSM 20603 8380941 YP_003161724.1 CDS Jden_1778 NC_013174.1 1941591 1942172 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sgl:SG2410 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B complement(1941591..1942172) Jonesia denitrificans DSM 20603 8380942 YP_003161725.1 CDS Jden_1779 NC_013174.1 1942169 1942402 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: bcb:BCB4264_A5432 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(1942169..1942402) Jonesia denitrificans DSM 20603 8380943 YP_003161726.1 CDS Jden_1780 NC_013174.1 1942558 1943403 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: acr:Acry_0397 F0F1 ATP synthase subunit A; ATP synthase F0 subunit A complement(1942558..1943403) Jonesia denitrificans DSM 20603 8380944 YP_003161727.1 CDS Jden_1781 NC_013174.1 1943630 1944166 R hypothetical protein complement(1943630..1944166) Jonesia denitrificans DSM 20603 8380945 YP_003161728.1 CDS Jden_1782 NC_013174.1 1944171 1945319 R PFAM: glycosyl transferase family 4; KEGG: scl:sce7324 glycosyltransferase; glycosyl transferase family protein complement(1944171..1945319) Jonesia denitrificans DSM 20603 8380946 YP_003161729.1 CDS Jden_1783 NC_013174.1 1945316 1946056 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: eba:ebA110 putative translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein complement(1945316..1946056) Jonesia denitrificans DSM 20603 8380947 YP_003161730.1 CDS Jden_1784 NC_013174.1 1946060 1947016 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: rce:RC1_2636 modification methylase,HemK family; HemK family modification methylase complement(1946060..1947016) Jonesia denitrificans DSM 20603 8380948 YP_003161731.1 CDS Jden_1785 NC_013174.1 1947022 1948107 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dvl:Dvul_0451 peptide chain release factor 1; peptide chain release factor 1 complement(1947022..1948107) Jonesia denitrificans DSM 20603 8380949 YP_003161732.1 CDS Jden_1786 NC_013174.1 1948275 1948484 R TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ppd:Ppro_2650 50S ribosomal protein L31; 50S ribosomal protein L31 complement(1948275..1948484) Jonesia denitrificans DSM 20603 8380950 YP_003161733.1 CDS Jden_1787 NC_013174.1 1948652 1950694 R KEGG: xca:xccb100_3960 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho complement(1948652..1950694) Jonesia denitrificans DSM 20603 8380951 YP_003161734.1 CDS Jden_1788 NC_013174.1 1950953 1951906 R KEGG: predicted protein; K00872 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; homoserine kinase complement(1950953..1951906) Jonesia denitrificans DSM 20603 8380952 YP_003161735.1 CDS Jden_1789 NC_013174.1 1951913 1952983 R TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bha:BH3421 threonine synthase; threonine synthase complement(1951913..1952983) Jonesia denitrificans DSM 20603 8380953 YP_003161736.1 CDS Jden_1790 NC_013174.1 1952983 1954284 R PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase; Homoserine dehydrogenase complement(1952983..1954284) Jonesia denitrificans DSM 20603 8380954 YP_003161737.1 CDS Jden_1791 NC_013174.1 1954378 1954866 D hypothetical protein 1954378..1954866 Jonesia denitrificans DSM 20603 8380955 YP_003161738.1 CDS Jden_1792 NC_013174.1 1954953 1956332 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bsu:BSU23380 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1954953..1956332) Jonesia denitrificans DSM 20603 8380956 YP_003161739.1 CDS Jden_1793 NC_013174.1 1956338 1958014 R KEGG: csa:Csal_0602 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1956338..1958014) Jonesia denitrificans DSM 20603 8380957 YP_003161740.1 CDS Jden_1794 NC_013174.1 1958174 1958848 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: psa:PST_2058 probable transcriptional regulator; GntR family transcriptional regulator 1958174..1958848 Jonesia denitrificans DSM 20603 8380958 YP_003161741.1 CDS Jden_1795 NC_013174.1 1959131 1960291 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ppr:PBPRA2712 teichoic acid biosynthesis protein F; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1959131..1960291 Jonesia denitrificans DSM 20603 8381805 YP_003161742.1 CDS Jden_1796 NC_013174.1 1960291 1961409 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bsu:BSU35760 polyglycerol phosphate assembly/export protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1960291..1961409 Jonesia denitrificans DSM 20603 8380960 YP_003161743.1 CDS Jden_1797 NC_013174.1 1961406 1961969 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcm:Bcenmc03_1482 MarR family transcriptional regulator; transcriptional regulator, MarR family complement(1961406..1961969) Jonesia denitrificans DSM 20603 8380961 YP_003161744.1 CDS Jden_1798 NC_013174.1 1962269 1965031 D PFAM: iron-containing alcohol dehydrogenase; KEGG: msu:MS2190 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1962269..1965031 Jonesia denitrificans DSM 20603 8380962 YP_003161745.1 CDS Jden_1799 NC_013174.1 1965227 1966903 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: proteophosphoglycan 5; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(1965227..1966903) Jonesia denitrificans DSM 20603 8380963 YP_003161746.1 CDS Jden_1800 NC_013174.1 1967110 1967895 R PFAM: CBS domain containing protein; KEGG: cak:Caul_0024 CBS domain-containing protein; hypothetical protein complement(1967110..1967895) Jonesia denitrificans DSM 20603 8380964 YP_003161747.1 CDS Jden_1801 NC_013174.1 1967892 1968911 R PFAM: CBS domain containing protein; transporter- associated region; KEGG: aeh:Mlg_0397 CBS domain-containing protein; hypothetical protein complement(1967892..1968911) Jonesia denitrificans DSM 20603 8380965 YP_003161748.1 CDS Jden_1802 NC_013174.1 1969139 1969837 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ppd:Ppro_3155 two component transcriptional regulator; two component transcriptional regulator, winged helix family 1969139..1969837 Jonesia denitrificans DSM 20603 8380966 YP_003161749.1 CDS Jden_1803 NC_013174.1 1969896 1970978 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ppd:Ppro_2227 integral membrane sensor signal transduction histidine kinase; histidine kinase 1969896..1970978 Jonesia denitrificans DSM 20603 8380967 YP_003161750.1 CDS Jden_1804 NC_013174.1 1970988 1971905 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0445 ABC transporter ATP-binding protein; ABC transporter 1970988..1971905 Jonesia denitrificans DSM 20603 8380968 YP_003161751.1 CDS Jden_1805 NC_013174.1 1971905 1972714 D hypothetical protein 1971905..1972714 Jonesia denitrificans DSM 20603 8380969 YP_003161752.1 CDS Jden_1806 NC_013174.1 1973055 1976831 D TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; KEGG: sus:Acid_5307 alpha-ketoglutarate decarboxylase; 2-oxoglutarate dehydrogenase, E1 subunit 1973055..1976831 Jonesia denitrificans DSM 20603 8380970 YP_003161753.1 CDS Jden_1807 NC_013174.1 1976934 1977536 D KEGG: mgm:Mmc1_3233 hypothetical protein; hypothetical protein 1976934..1977536 Jonesia denitrificans DSM 20603 8380971 YP_003161754.1 CDS Jden_1808 NC_013174.1 1977631 1978929 R KEGG: aba:Acid345_0704 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(1977631..1978929) Jonesia denitrificans DSM 20603 8380972 YP_003161755.1 CDS Jden_1809 NC_013174.1 1979031 1979306 R TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor; anti-sigma factor complement(1979031..1979306) Jonesia denitrificans DSM 20603 8380973 YP_003161756.1 CDS Jden_1810 NC_013174.1 1979303 1980055 R TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit complement(1979303..1980055) Jonesia denitrificans DSM 20603 8380974 YP_003161757.1 CDS Jden_1811 NC_013174.1 1980179 1980664 D hypothetical protein 1980179..1980664 Jonesia denitrificans DSM 20603 8380975 YP_003161758.1 CDS Jden_1812 NC_013174.1 1980725 1982065 D TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: rlt:Rleg2_0533 3-phosphoshikimate 1- carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 1980725..1982065 Jonesia denitrificans DSM 20603 8380976 YP_003161759.1 CDS Jden_1813 NC_013174.1 1982094 1983194 D PFAM: GTPase EngC; KEGG: pag:PLES_53381 putative GTPase; GTPase EngC 1982094..1983194 Jonesia denitrificans DSM 20603 8380977 YP_003161760.1 CDS Jden_1814 NC_013174.1 1983221 1984018 D TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: ade:Adeh_1287 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase 1983221..1984018 Jonesia denitrificans DSM 20603 8380978 YP_003161761.1 CDS Jden_1815 NC_013174.1 1984051 1984536 R hypothetical protein complement(1984051..1984536) Jonesia denitrificans DSM 20603 8380979 YP_003161762.1 CDS Jden_1816 NC_013174.1 1984555 1985943 R KEGG: sme:SMa1573 CpaE2 pilus assembly protein; hypothetical protein complement(1984555..1985943) Jonesia denitrificans DSM 20603 8380980 YP_003161763.1 CDS Jden_1817 NC_013174.1 1985940 1986665 R PFAM: SAF domain protein; SAF domain-containing protein complement(1985940..1986665) Jonesia denitrificans DSM 20603 8380981 YP_003161764.1 CDS Jden_1818 NC_013174.1 1986802 1987017 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: nwi:Nwi_0271 excisionase/Xis, DNA-binding; DNA binding domain-containing protein 1986802..1987017 Jonesia denitrificans DSM 20603 8380982 YP_003161765.1 CDS Jden_1819 NC_013174.1 1987044 1987622 R hypothetical protein complement(1987044..1987622) Jonesia denitrificans DSM 20603 8380983 YP_003161766.1 CDS Jden_1820 NC_013174.1 1987777 1988664 D KEGG: similar to mucin 17; hypothetical protein 1987777..1988664 Jonesia denitrificans DSM 20603 8380984 YP_003161767.1 CDS Jden_1821 NC_013174.1 1988749 1989201 D hypothetical protein 1988749..1989201 Jonesia denitrificans DSM 20603 8380985 YP_003161768.1 CDS Jden_1822 NC_013174.1 1989283 1992003 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; helicase domain protein; KEGG: glo:Glov_2490 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA complement(1989283..1992003) Jonesia denitrificans DSM 20603 8380986 YP_003161769.1 CDS Jden_1823 NC_013174.1 1992272 1992931 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bcy:Bcer98_3727 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1992272..1992931) Jonesia denitrificans DSM 20603 8380987 YP_003161770.1 CDS Jden_1824 NC_013174.1 1993078 1993845 R KEGG: pca:Pcar_2573 amidophosphoribosyltransferase; amidophosphoribosyltransferase-like protein complement(1993078..1993845) Jonesia denitrificans DSM 20603 8380988 YP_003161771.1 CDS Jden_1825 NC_013174.1 1993984 1995735 R hypothetical protein complement(1993984..1995735) Jonesia denitrificans DSM 20603 8380989 YP_003161772.1 CDS Jden_1826 NC_013174.1 1995728 1997404 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ank:AnaeK_1664 integral membrane sensor hybrid histidine kinase; histidine kinase complement(1995728..1997404) Jonesia denitrificans DSM 20603 8380990 YP_003161773.1 CDS Jden_1827 NC_013174.1 1997407 1998090 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_4006 two component transcriptional regulator; two component transcriptional regulator, winged helix family complement(1997407..1998090) Jonesia denitrificans DSM 20603 8380991 YP_003161774.1 CDS Jden_1828 NC_013174.1 1998095 1998226 R hypothetical protein complement(1998095..1998226) Jonesia denitrificans DSM 20603 8380992 YP_003161775.1 CDS Jden_1829 NC_013174.1 1998297 1999541 D KEGG: hypothetical protein; hypothetical protein 1998297..1999541 Jonesia denitrificans DSM 20603 8380993 YP_003161776.1 CDS Jden_1830 NC_013174.1 1999538 2000179 D KEGG: bha:BH0729 hypothetical protein; hypothetical protein 1999538..2000179 Jonesia denitrificans DSM 20603 8380994 YP_003161777.1 CDS Jden_1831 NC_013174.1 2000176 2001363 D KEGG: WSC4; ER membrane protein involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; may also have a role in the stress response; hypothetical protein 2000176..2001363 Jonesia denitrificans DSM 20603 8380995 YP_003161778.1 CDS Jden_1832 NC_013174.1 2001353 2002336 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bra:BRADO4262 hypothetical protein; ATPase 2001353..2002336 Jonesia denitrificans DSM 20603 8380996 YP_003161779.1 CDS Jden_1833 NC_013174.1 2002351 2003643 D PFAM: protein of unknown function DUF58; KEGG: sal:Sala_2966 hypothetical protein; hypothetical protein 2002351..2003643 Jonesia denitrificans DSM 20603 8380997 YP_003161780.1 CDS Jden_1834 NC_013174.1 2003640 2003828 D hypothetical protein 2003640..2003828 Jonesia denitrificans DSM 20603 8380998 YP_003161781.1 CDS Jden_1835 NC_013174.1 2003845 2004831 R PFAM: protein of unknown function DUF95 transmembrane; KEGG: mxa:MXAN_3115 hypothetical protein; hypothetical protein complement(2003845..2004831) Jonesia denitrificans DSM 20603 8380999 YP_003161782.1 CDS Jden_1836 NC_013174.1 2004927 2005733 D PFAM: RDD domain containing protein; KEGG: mxa:MXAN_3116 RDD family protein; RDD domain-containing protein 2004927..2005733 Jonesia denitrificans DSM 20603 8381000 YP_003161783.1 CDS Jden_1837 NC_013174.1 2005759 2007243 R KEGG: ade:Adeh_0156 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S- adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase complement(2005759..2007243) Jonesia denitrificans DSM 20603 8381001 YP_003161784.1 CDS Jden_1838 NC_013174.1 2007294 2009909 D TIGRFAM: SpoIID/LytB domain protein; PFAM: SH3 type 3 domain protein; KEGG: bha:BH3648 hypothetical protein; SpoIID/LytB domain-containing protein 2007294..2009909 Jonesia denitrificans DSM 20603 8381002 YP_003161785.1 CDS Jden_1839 NC_013174.1 2009928 2011643 D PFAM: Endonuclease/exonuclease/phosphatase; Fibronectin type III domain protein; KEGG: gur:Gura_2022 fibronectin, type III domain- containing protein; endonuclease/exonuclease/phosphatase 2009928..2011643 Jonesia denitrificans DSM 20603 8381003 YP_003161786.1 CDS Jden_1840 NC_013174.1 2011666 2012967 R KEGG: pat:Patl_3209 hypothetical protein; hypothetical protein complement(2011666..2012967) Jonesia denitrificans DSM 20603 8381004 YP_003161787.1 CDS Jden_1841 NC_013174.1 2013076 2013222 R hypothetical protein complement(2013076..2013222) Jonesia denitrificans DSM 20603 8381005 YP_003161788.1 CDS Jden_1842 NC_013174.1 2013258 2014709 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KR domain protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: zmo:ZMO0353 pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2013258..2014709 Jonesia denitrificans DSM 20603 8381006 YP_003161789.1 CDS Jden_1843 NC_013174.1 2014724 2016490 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cak:Caul_1690 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 2014724..2016490 Jonesia denitrificans DSM 20603 8381007 YP_003161790.1 CDS Jden_1844 NC_013174.1 2016512 2018257 R KEGG: apa:APP7_1639 putative CDP- glycerol:glycerophosphate; hypothetical protein complement(2016512..2018257) Jonesia denitrificans DSM 20603 8381008 YP_003161791.1 CDS Jden_1845 NC_013174.1 2018254 2019120 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA2549 efflux ABC transporter, ATP- binding protein, putative; ABC transporter complement(2018254..2019120) Jonesia denitrificans DSM 20603 8381009 YP_003161792.1 CDS Jden_1846 NC_013174.1 2019113 2019937 R PFAM: ABC-2 type transporter; KEGG: bha:BH3660 teichoic acid ABC transporter (permease); ABC transporter complement(2019113..2019937) Jonesia denitrificans DSM 20603 8381010 YP_003161793.1 CDS Jden_1847 NC_013174.1 2020145 2023495 R PFAM: glycosyl transferase family 2; CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ppr:PBPRA2712 teichoic acid biosynthesis protein F; family 2 glycosyl transferase complement(2020145..2023495) Jonesia denitrificans DSM 20603 8381011 YP_003161794.1 CDS Jden_1848 NC_013174.1 2023598 2024884 R PFAM: CHAP domain containing protein; CHAP protein complement(2023598..2024884) Jonesia denitrificans DSM 20603 8381012 YP_003161795.1 CDS Jden_1849 NC_013174.1 2024932 2026212 R PFAM: CHAP domain containing protein; KEGG: hypothetical protein; CHAP protein complement(2024932..2026212) Jonesia denitrificans DSM 20603 8381013 YP_003161796.1 CDS Jden_1850 NC_013174.1 2026338 2027453 D PFAM: acyltransferase 3; KEGG: bsu:BSU13520 hypothetical protein; acyltransferase 3 2026338..2027453 Jonesia denitrificans DSM 20603 8381014 YP_003161797.1 CDS Jden_1851 NC_013174.1 2027463 2028122 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfuC; iron(III) ABC transporter; ABC transporter complement(2027463..2028122) Jonesia denitrificans DSM 20603 8381015 YP_003161798.1 CDS Jden_1852 NC_013174.1 2028119 2028937 R TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce1134 ABC-type molybdate transporter, permease protein; ABC transporter complement(2028119..2028937) Jonesia denitrificans DSM 20603 8381016 YP_003161799.1 CDS Jden_1853 NC_013174.1 2028934 2029734 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce1135 ABC-type molybdate transporter, substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2028934..2029734) Jonesia denitrificans DSM 20603 8381017 YP_003161800.1 CDS Jden_1854 NC_013174.1 2029737 2030138 R PFAM: TOBE domain protein; regulatory protein MerR; KEGG: aba:Acid345_1548 molybdenum-pterin binding protein; TOBE domain-containing protein complement(2029737..2030138) Jonesia denitrificans DSM 20603 8381018 YP_003161801.1 CDS Jden_1855 NC_013174.1 2030266 2030457 R PFAM: protein of unknown function DUF343; KEGG: pau:PA14_25520 hypothetical protein; hypothetical protein complement(2030266..2030457) Jonesia denitrificans DSM 20603 8381019 YP_003161802.1 CDS Jden_1856 NC_013174.1 2030511 2032019 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase complement(2030511..2032019) Jonesia denitrificans DSM 20603 8381020 YP_003161803.1 CDS Jden_1857 NC_013174.1 2032065 2032829 R KEGG: mxa:MXAN_1353 hypothetical protein; hypothetical protein complement(2032065..2032829) Jonesia denitrificans DSM 20603 8381021 YP_003161804.1 CDS Jden_1858 NC_013174.1 2033027 2033392 D hypothetical protein 2033027..2033392 Jonesia denitrificans DSM 20603 8381022 YP_003161805.1 CDS Jden_1859 NC_013174.1 2033406 2035277 R KEGG: dal:Dalk_2295 Hemagluttinin repeat-containing protein; hypothetical protein complement(2033406..2035277) Jonesia denitrificans DSM 20603 8381023 YP_003161806.1 CDS Jden_1860 NC_013174.1 2035277 2038855 R KEGG: sus:Acid_6302 glycosyl transferase family protein; glycosyltransferase-like protein complement(2035277..2038855) Jonesia denitrificans DSM 20603 8381024 YP_003161807.1 CDS Jden_1861 NC_013174.1 2038956 2039285 R PFAM: transcription factor WhiB; transcription factor WhiB complement(2038956..2039285) Jonesia denitrificans DSM 20603 8381025 YP_003161808.1 CDS Jden_1862 NC_013174.1 2039546 2040313 D hypothetical protein 2039546..2040313 Jonesia denitrificans DSM 20603 8381026 YP_003161809.1 CDS Jden_1863 NC_013174.1 2040382 2041407 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rru:Rru_B0050 dTDP-glucose 4,6-dehydratase; NAD-dependent epimerase/dehydratase complement(2040382..2041407) Jonesia denitrificans DSM 20603 8381027 YP_003161810.1 CDS Jden_1864 NC_013174.1 2041528 2042703 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_1499 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 2041528..2042703 Jonesia denitrificans DSM 20603 8381028 YP_003161811.1 CDS Jden_1865 NC_013174.1 2042856 2044160 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 2042856..2044160 Jonesia denitrificans DSM 20603 8381029 YP_003161812.1 CDS Jden_1866 NC_013174.1 2044165 2044683 R KEGG: hypothetical protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2044165..2044683) Jonesia denitrificans DSM 20603 8381030 YP_003161813.1 CDS Jden_1867 NC_013174.1 2044680 2045873 R KEGG: pzu:PHZ_c3286 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2044680..2045873) Jonesia denitrificans DSM 20603 8381031 YP_003161814.1 CDS Jden_1868 NC_013174.1 2045976 2046935 R KEGG: ppf:Pput_2757 hypothetical protein; triacylglycerol lipase complement(2045976..2046935) Jonesia denitrificans DSM 20603 8381032 YP_003161815.1 CDS Jden_1869 NC_013174.1 2047099 2047575 D PFAM: GtrA family protein; KEGG: pol:Bpro_5438 GtrA-like protein; GtrA family protein 2047099..2047575 Jonesia denitrificans DSM 20603 8381033 YP_003161816.1 CDS Jden_1870 NC_013174.1 2047649 2049010 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5327 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(2047649..2049010) Jonesia denitrificans DSM 20603 8381034 YP_003161817.1 CDS Jden_1871 NC_013174.1 2049070 2049750 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aba:Acid345_3061 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family complement(2049070..2049750) Jonesia denitrificans DSM 20603 8381035 YP_003161818.1 CDS Jden_1872 NC_013174.1 2049866 2051134 D PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase 2049866..2051134 Jonesia denitrificans DSM 20603 8381036 YP_003161819.1 CDS Jden_1873 NC_013174.1 2051145 2051846 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family 2051145..2051846 Jonesia denitrificans DSM 20603 8381037 YP_003161820.1 CDS Jden_1874 NC_013174.1 2052039 2052815 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit; ABC transporter 2052039..2052815 Jonesia denitrificans DSM 20603 8381038 YP_003161821.1 CDS Jden_1875 NC_013174.1 2052829 2055465 D PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1312 hypothetical protein; hypothetical protein 2052829..2055465 Jonesia denitrificans DSM 20603 8381039 YP_003161822.1 CDS Jden_1876 NC_013174.1 2055504 2055968 R KEGG: pap:PSPA7_2488 hypothetical protein; hypothetical protein complement(2055504..2055968) Jonesia denitrificans DSM 20603 8381040 YP_003161823.1 CDS Jden_1877 NC_013174.1 2056325 2056573 D PFAM: transcription factor WhiB; transcription factor WhiB 2056325..2056573 Jonesia denitrificans DSM 20603 8381041 YP_003161824.1 CDS Jden_1878 NC_013174.1 2056682 2057737 R KEGG: aav:Aave_4199 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; transcriptional regulator, LacI family complement(2056682..2057737) Jonesia denitrificans DSM 20603 8381042 YP_003161825.1 CDS Jden_1879 NC_013174.1 2057794 2059260 R KEGG: scl:sce4297 Beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase complement(2057794..2059260) Jonesia denitrificans DSM 20603 8381043 YP_003161826.1 CDS Jden_1880 NC_013174.1 2059257 2060177 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1926 sugar transport system (permease); binding-protein-dependent transport system inner membrane protein complement(2059257..2060177) Jonesia denitrificans DSM 20603 8381044 YP_003161827.1 CDS Jden_1881 NC_013174.1 2060174 2061178 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease); binding-protein-dependent transport system inner membrane protein complement(2060174..2061178) Jonesia denitrificans DSM 20603 8381045 YP_003161828.1 CDS Jden_1882 NC_013174.1 2061346 2062686 R PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein complement(2061346..2062686) Jonesia denitrificans DSM 20603 8381046 YP_003161829.1 CDS Jden_1883 NC_013174.1 2063103 2063594 R hypothetical protein complement(2063103..2063594) Jonesia denitrificans DSM 20603 8381047 YP_003161830.1 CDS Jden_1884 NC_013174.1 2063662 2065116 D PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_1419 signal transduction histidine kinase; signal transduction histidine kinase 2063662..2065116 Jonesia denitrificans DSM 20603 8381048 YP_003161831.1 CDS Jden_1885 NC_013174.1 2065196 2065921 R PFAM: Chlorite dismutase; KEGG: bsu:BSU37670 putative heme peroxidase; chlorite dismutase complement(2065196..2065921) Jonesia denitrificans DSM 20603 8381049 YP_003161832.1 CDS Jden_1886 NC_013174.1 2065983 2067134 R PFAM: ferrochelatase; KEGG: sus:Acid_1029 ferrochelatase; ferrochelatase complement(2065983..2067134) Jonesia denitrificans DSM 20603 8381050 YP_003161833.1 CDS Jden_1887 NC_013174.1 2067272 2068051 R KEGG: acr:Acry_2740 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase complement(2067272..2068051) Jonesia denitrificans DSM 20603 8381051 YP_003161834.1 CDS Jden_1888 NC_013174.1 2068195 2069019 D PFAM: Hly-III family protein; KEGG: afw:Anae109_1200 hemolysin III family channel protein; Hly-III family protein 2068195..2069019 Jonesia denitrificans DSM 20603 8381052 YP_003161835.1 CDS Jden_1889 NC_013174.1 2069023 2069805 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: kpe:KPK_3915 hydrolase, carbon-nitrogen family; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase complement(2069023..2069805) Jonesia denitrificans DSM 20603 8381053 YP_003161836.1 CDS Jden_1890 NC_013174.1 2069802 2070176 R hypothetical protein complement(2069802..2070176) Jonesia denitrificans DSM 20603 8381054 YP_003161837.1 CDS Jden_1891 NC_013174.1 2070188 2071063 R TIGRFAM: mycothiol conjugate amidase Mca; PFAM: LmbE family protein; KEGG: aba:Acid345_2880 LmbE-like protein; mycothiol conjugate amidase Mca complement(2070188..2071063) Jonesia denitrificans DSM 20603 8381055 YP_003161838.1 CDS Jden_1892 NC_013174.1 2071156 2071671 D hypothetical protein 2071156..2071671 Jonesia denitrificans DSM 20603 8381056 YP_003161839.1 CDS Jden_1893 NC_013174.1 2071923 2072405 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: lip:LI0307 transcription elongation factor GreA; transcription elongation factor GreA 2071923..2072405 Jonesia denitrificans DSM 20603 8381057 YP_003161840.1 CDS Jden_1894 NC_013174.1 2072493 2073719 R TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gbm:Gbem_3689 threonine dehydratase; threonine dehydratase complement(2072493..2073719) Jonesia denitrificans DSM 20603 8381058 YP_003161841.1 CDS Jden_1895 NC_013174.1 2073724 2075175 R PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_7270 hypothetical protein; hypothetical protein complement(2073724..2075175) Jonesia denitrificans DSM 20603 8381059 YP_003161842.1 CDS Jden_1896 NC_013174.1 2075324 2075995 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: mxa:MXAN_7060 methionine-S-sulfoxide reductase; peptide methionine sulfoxide reductase 2075324..2075995 Jonesia denitrificans DSM 20603 8381060 YP_003161843.1 CDS Jden_1897 NC_013174.1 2076048 2076857 R PFAM: LysR substrate-binding; KEGG: scl:sce1423 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2076048..2076857) Jonesia denitrificans DSM 20603 8381061 YP_003161844.1 CDS Jden_1898 NC_013174.1 2076920 2077309 D hypothetical protein 2076920..2077309 Jonesia denitrificans DSM 20603 8381062 YP_003161845.1 CDS Jden_1899 NC_013174.1 2077392 2077796 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: hypothetical protein; FKBP-type peptidylprolyl isomerase complement(2077392..2077796) Jonesia denitrificans DSM 20603 8381063 YP_003161846.1 CDS Jden_1900 NC_013174.1 2077983 2078813 R PFAM: protein of unknown function DUF1112; KEGG: xfa:XF2760 hypothetical protein; hypothetical protein complement(2077983..2078813) Jonesia denitrificans DSM 20603 8381064 YP_003161847.1 CDS Jden_1901 NC_013174.1 2078923 2079456 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rce:RC1_2891 intracellular protease, PFpI family protein, putative; Pfpi family intracellular protease complement(2078923..2079456) Jonesia denitrificans DSM 20603 8381065 YP_003161848.1 CDS Jden_1902 NC_013174.1 2079733 2081961 D PFAM: acyltransferase 3; KEGG: mes:Meso_0485 acyltransferase 3; acyltransferase 3 2079733..2081961 Jonesia denitrificans DSM 20603 8381066 YP_003161849.1 CDS Jden_1903 NC_013174.1 2081994 2083880 R KEGG: dal:Dalk_4101 hypothetical protein; hypothetical protein complement(2081994..2083880) Jonesia denitrificans DSM 20603 8381067 YP_003161850.1 CDS Jden_1904 NC_013174.1 2083877 2084674 R KEGG: rde:RD1_3606 hypothetical protein; hypothetical protein complement(2083877..2084674) Jonesia denitrificans DSM 20603 8381068 YP_003161851.1 CDS Jden_1905 NC_013174.1 2084671 2085243 R KEGG: pap:PSPA7_2550 hypothetical protein; hypothetical protein complement(2084671..2085243) Jonesia denitrificans DSM 20603 8381069 YP_003161852.1 CDS Jden_1906 NC_013174.1 2085375 2086727 R hypothetical protein complement(2085375..2086727) Jonesia denitrificans DSM 20603 8381070 YP_003161853.1 CDS Jden_1907 NC_013174.1 2086827 2088164 R KEGG: scl:sce8613 Mg2+ transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; magnesium transporter complement(2086827..2088164) Jonesia denitrificans DSM 20603 8381071 YP_003161854.1 CDS Jden_1908 NC_013174.1 2088548 2089432 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2702 ABC transporter related; ABC transporter 2088548..2089432 Jonesia denitrificans DSM 20603 8381072 YP_003161855.1 CDS Jden_1909 NC_013174.1 2089473 2090480 D PFAM: periplasmic binding protein; KEGG: bha:BH1037 iron (III) dicitrate transport system (permease); periplasmic binding protein 2089473..2090480 Jonesia denitrificans DSM 20603 8381073 YP_003161856.1 CDS Jden_1910 NC_013174.1 2090531 2092645 D PFAM: transport system permease protein; KEGG: bcb:BCB4264_A4637 iron compound ABC transporter, permease protein; transport system permease 2090531..2092645 Jonesia denitrificans DSM 20603 8381074 YP_003161857.1 CDS Jden_1911 NC_013174.1 2092675 2093499 D PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: bur:Bcep18194_A5754 UbiE/COQ5 methyltransferase; type 12 methyltransferase 2092675..2093499 Jonesia denitrificans DSM 20603 8381075 YP_003161858.1 CDS Jden_1912 NC_013174.1 2093569 2093727 D hypothetical protein 2093569..2093727 Jonesia denitrificans DSM 20603 8381076 YP_003161859.1 CDS Jden_1913 NC_013174.1 2093795 2096602 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: tmz:Tmz1t_1112 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2093795..2096602 Jonesia denitrificans DSM 20603 8381077 YP_003161860.1 CDS Jden_1914 NC_013174.1 2096599 2096952 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: maq:Maqu_2857 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L 2096599..2096952 Jonesia denitrificans DSM 20603 8381078 YP_003161861.1 CDS Jden_1915 NC_013174.1 2096949 2098514 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: maq:Maqu_2858 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2096949..2098514 Jonesia denitrificans DSM 20603 8381079 YP_003161862.1 CDS Jden_1916 NC_013174.1 2098511 2098882 D PFAM: cation antiporter; KEGG: hha:Hhal_2031 cation antiporter; cation antiporter 2098511..2098882 Jonesia denitrificans DSM 20603 8381080 YP_003161863.1 CDS Jden_1917 NC_013174.1 2098879 2099136 D PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 putative monovalent cation/H+ antiporter subunit F; multiple resistance and pH regulation protein F 2098879..2099136 Jonesia denitrificans DSM 20603 8381081 YP_003161864.1 CDS Jden_1918 NC_013174.1 2099133 2099459 D PFAM: Na+/H+ antiporter subunit; KEGG: sse:Ssed_1393 putative monovalent cation/H+ antiporter subunit G; Na+/H+ antiporter subunit 2099133..2099459 Jonesia denitrificans DSM 20603 8381082 YP_003161865.1 CDS Jden_1919 NC_013174.1 2099727 2101166 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3707 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2099727..2101166) Jonesia denitrificans DSM 20603 8381806 YP_003161866.1 CDS Jden_1920 NC_013174.1 2101320 2102306 R PFAM: Ppx/GppA phosphatase; KEGG: scl:sce1705 hypothetical protein; Ppx/GppA phosphatase complement(2101320..2102306) Jonesia denitrificans DSM 20603 8381084 YP_003161867.1 CDS Jden_1921 NC_013174.1 2102421 2102972 R PFAM: protein of unknown function DUF501; KEGG: csa:Csal_3040 hypothetical protein; hypothetical protein complement(2102421..2102972) Jonesia denitrificans DSM 20603 8381085 YP_003161868.1 CDS Jden_1922 NC_013174.1 2102959 2103537 R PFAM: Septum formation initiator; septum formation initiator complement(2102959..2103537) Jonesia denitrificans DSM 20603 8381086 YP_003161869.1 CDS Jden_1924 NC_013174.1 2104005 2105297 R KEGG: ade:Adeh_1642 enolase; TIGRFAM: enolase; PFAM: enolase; enolase complement(2104005..2105297) Jonesia denitrificans DSM 20603 8381807 YP_003161870.1 CDS Jden_1925 NC_013174.1 2105377 2106102 R TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: glo:Glov_2046 MazG family protein; MazG family protein complement(2105377..2106102) Jonesia denitrificans DSM 20603 8381088 YP_003161871.1 CDS Jden_1926 NC_013174.1 2106179 2108245 R KEGG: bba:Bd1224 alpha-amylase; PFAM: alpha amylase catalytic region; Carbohydrate binding family 25; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; Alpha-amylase complement(2106179..2108245) Jonesia denitrificans DSM 20603 8381089 YP_003161872.1 CDS Jden_1927 NC_013174.1 2108585 2111329 R PFAM: alpha amylase catalytic region; Carbohydrate binding family 25; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: sde:Sde_2938 ATPase; alpha amylase complement(2108585..2111329) Jonesia denitrificans DSM 20603 8381090 YP_003161873.1 CDS Jden_1928 NC_013174.1 2111810 2113948 D PFAM: Carbohydrate-binding CenC domain protein; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: bsu:BSU18160 endo-1,4-beta-xylanase (xylanase D); Carbohydrate-binding CenC domain-containing protein 2111810..2113948 Jonesia denitrificans DSM 20603 8381091 YP_003161874.1 CDS Jden_1929 NC_013174.1 2114036 2114851 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3617 ABC transporter-related protein; ABC transporter complement(2114036..2114851) Jonesia denitrificans DSM 20603 8381092 YP_003161875.1 CDS Jden_1930 NC_013174.1 2114848 2115642 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_2772 ABC transporter related; ABC transporter complement(2114848..2115642) Jonesia denitrificans DSM 20603 8381093 YP_003161876.1 CDS Jden_1931 NC_013174.1 2115639 2116529 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2771 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2115639..2116529) Jonesia denitrificans DSM 20603 8381094 YP_003161877.1 CDS Jden_1932 NC_013174.1 2116526 2117491 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2770 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2116526..2117491) Jonesia denitrificans DSM 20603 8381095 YP_003161878.1 CDS Jden_1933 NC_013174.1 2117573 2119090 R PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_0459 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(2117573..2119090) Jonesia denitrificans DSM 20603 8381096 YP_003161879.1 CDS Jden_1934 NC_013174.1 2119533 2120765 R PFAM: protein of unknown function UPF0027; KEGG: scl:sce1307 hypothetical protein; hypothetical protein complement(2119533..2120765) Jonesia denitrificans DSM 20603 8381097 YP_003161880.1 CDS Jden_1935 NC_013174.1 2120860 2124510 R KEGG: gsu:GSU0017 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; TRCF domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; transcription-repair coupling factor complement(2120860..2124510) Jonesia denitrificans DSM 20603 8381098 YP_003161881.1 CDS Jden_1936 NC_013174.1 2124660 2126552 D KEGG: mfa:Mfla_0340 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 2124660..2126552 Jonesia denitrificans DSM 20603 8381099 YP_003161882.1 CDS Jden_1939 NC_013174.1 2127324 2128031 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family; CarD family transcriptional regulator 2127324..2128031 Jonesia denitrificans DSM 20603 8381809 YP_003161883.1 CDS Jden_1940 NC_013174.1 2128056 2128673 R KEGG: mxa:MXAN_5077 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(2128056..2128673) Jonesia denitrificans DSM 20603 8381101 YP_003161884.1 CDS Jden_1941 NC_013174.1 2128800 2129381 R TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pen:PSEEN0856 50S ribosomal protein L25/general stress protein Ctc; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 complement(2128800..2129381) Jonesia denitrificans DSM 20603 8381102 YP_003161885.1 CDS Jden_1942 NC_013174.1 2129533 2130516 R KEGG: bbt:BBta_1761 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(2129533..2130516) Jonesia denitrificans DSM 20603 8381103 YP_003161886.1 CDS Jden_1943 NC_013174.1 2130520 2132169 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: psb:Psyr_5119 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(2130520..2132169) Jonesia denitrificans DSM 20603 8381104 YP_003161887.1 CDS Jden_1944 NC_013174.1 2132482 2133099 D PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family; TetR family transcriptional regulator 2132482..2133099 Jonesia denitrificans DSM 20603 8381810 YP_003161888.1 CDS Jden_1945 NC_013174.1 2133232 2134143 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU09890 hypothetical protein; ABC transporter 2133232..2134143 Jonesia denitrificans DSM 20603 8381106 YP_003161889.1 CDS Jden_1946 NC_013174.1 2134146 2135348 D PFAM: ABC-2 type transporter; KEGG: bha:BH1167 hypothetical protein; ABC transporter 2134146..2135348 Jonesia denitrificans DSM 20603 8381107 YP_003161890.1 CDS Jden_1947 NC_013174.1 2135412 2136122 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 2135412..2136122 Jonesia denitrificans DSM 20603 8381108 YP_003161891.1 CDS Jden_1948 NC_013174.1 2136187 2137632 D TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pmr:PMI0655 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphogluconate dehydrogenase 2136187..2137632 Jonesia denitrificans DSM 20603 8381109 YP_003161892.1 CDS Jden_1949 NC_013174.1 2137788 2138288 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family; transcriptional regulator, MarR family 2137788..2138288 Jonesia denitrificans DSM 20603 8381110 YP_003161893.1 CDS Jden_1950 NC_013174.1 2138555 2140402 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2173 ABC transporter, ATP- binding protein; ABC transporter complement(2138555..2140402) Jonesia denitrificans DSM 20603 8381111 YP_003161894.1 CDS Jden_1952 NC_013174.1 2140668 2142470 R KEGG: bha:BH0057 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; 4- diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: ribosomal RNA adenine methylase transferase; GHMP kinase; GHMP kinase domain protein; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase complement(2140668..2142470) Jonesia denitrificans DSM 20603 8381811 YP_003161895.1 CDS Jden_1953 NC_013174.1 2142580 2143899 R PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bha:BH0055 hypothetical protein; transglycosylase complement(2142580..2143899) Jonesia denitrificans DSM 20603 8381113 YP_003161896.1 CDS Jden_1954 NC_013174.1 2144223 2145569 R PFAM: protein of unknown function DUF348; KEGG: bph:Bphy_5604 hypothetical protein; hypothetical protein complement(2144223..2145569) Jonesia denitrificans DSM 20603 8381114 YP_003161897.1 CDS Jden_1955 NC_013174.1 2145609 2146778 R PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bsu:BSU00400 hypothetical protein; G5 domain-containing protein complement(2145609..2146778) Jonesia denitrificans DSM 20603 8381115 YP_003161898.1 CDS Jden_1956 NC_013174.1 2146875 2147786 R PFAM: TatD-related deoxyribonuclease; KEGG: pca:Pcar_1695 Mg-dependent DNase; TatD-related deoxyribonuclease complement(2146875..2147786) Jonesia denitrificans DSM 20603 8381116 YP_003161899.1 CDS Jden_1957 NC_013174.1 2147840 2149456 R TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: gme:Gmet_2321 methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(2147840..2149456) Jonesia denitrificans DSM 20603 8381117 YP_003161900.1 CDS Jden_1958 NC_013174.1 2149461 2150954 R KEGG: bha:BH2090 glucose dehydrogenase-B; Glucose/sorbosone dehydrogenase-like protein complement(2149461..2150954) Jonesia denitrificans DSM 20603 8381118 YP_003161901.1 CDS Jden_1959 NC_013174.1 2151071 2151655 D PFAM: isochorismatase hydrolase; KEGG: sml:Smlt0257 putative pyrazinamidase/nicotinamidase; isochorismatase hydrolase 2151071..2151655 Jonesia denitrificans DSM 20603 8381119 YP_003161902.1 CDS Jden_1960 NC_013174.1 2151766 2152860 D KEGG: rec:RHECIAT_CH0003387 xylose ABC transporter, substrate-binding protein; xylose ABC transporter, substrate-binding protein 2151766..2152860 Jonesia denitrificans DSM 20603 8381120 YP_003161903.1 CDS Jden_1961 NC_013174.1 2152857 2154464 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2152857..2154464 Jonesia denitrificans DSM 20603 8381121 YP_003161904.1 CDS Jden_1962 NC_013174.1 2154535 2156304 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cvi:CV_0825 transport ATP-binding protein MsbA; ABC transporter complement(2154535..2156304) Jonesia denitrificans DSM 20603 8381122 YP_003161905.1 CDS Jden_1963 NC_013174.1 2156350 2157186 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aeh:Mlg_2203 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase complement(2156350..2157186) Jonesia denitrificans DSM 20603 8381123 YP_003161906.1 CDS Jden_1964 NC_013174.1 2157430 2159148 D PFAM: glycosyl transferase family 39; KEGG: mca:MCA2192 dolichyl-phosphate-mannose- protein mannosyltransferase family protein; glycosyl transferase family protein 2157430..2159148 Jonesia denitrificans DSM 20603 8381124 YP_003161907.1 CDS Jden_1965 NC_013174.1 2159202 2160608 R PFAM: Aldehyde Dehydrogenase; KEGG: amc:MADE_00587 NAD-dependent aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(2159202..2160608) Jonesia denitrificans DSM 20603 8381125 YP_003161908.1 CDS Jden_1966 NC_013174.1 2160624 2161799 R KEGG: similar to Sp17 protein; hypothetical protein complement(2160624..2161799) Jonesia denitrificans DSM 20603 8381126 YP_003161909.1 CDS Jden_1967 NC_013174.1 2161893 2162507 R PFAM: GCN5-related N-acetyltransferase; KEGG: oca:OCAR_4695 ribosomal-protein-alanine N- acetyltransferase; N-acetyltransferase GCN5 complement(2161893..2162507) Jonesia denitrificans DSM 20603 8381127 YP_003161910.1 CDS Jden_1968 NC_013174.1 2162534 2163778 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: rpd:RPD_2838 MoeA-likedomain-containing protein; molybdenum cofactor synthesis domain-containing protein complement(2162534..2163778) Jonesia denitrificans DSM 20603 8381128 YP_003161911.1 CDS Jden_1969 NC_013174.1 2163947 2164591 D TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mgm:Mmc1_0714 5-formyltetrahydrofolate cyclo- ligase; 5-formyltetrahydrofolate cyclo-ligase 2163947..2164591 Jonesia denitrificans DSM 20603 8381129 YP_003161912.1 CDS Jden_1970 NC_013174.1 2164669 2164872 D TIGRFAM: regulatory protein, FmdB family; KEGG: aba:Acid345_0034 type I antifreeze protein; FmdB family regulatory protein 2164669..2164872 Jonesia denitrificans DSM 20603 8381130 YP_003161913.1 CDS Jden_1971 NC_013174.1 2165025 2165690 D PFAM: SAF domain protein; KEGG: msl:Msil_2690 Flp pilus assembly protein CpaB; SAF domain-containing protein 2165025..2165690 Jonesia denitrificans DSM 20603 8381131 YP_003161914.1 CDS Jden_1972 NC_013174.1 2165734 2166132 D TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: aba:Acid345_0006 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein 2165734..2166132 Jonesia denitrificans DSM 20603 8381132 YP_003161915.1 CDS Jden_1973 NC_013174.1 2166169 2166438 R hypothetical protein complement(2166169..2166438) Jonesia denitrificans DSM 20603 8381133 YP_003161916.1 CDS Jden_1974 NC_013174.1 2166431 2170930 R KEGG: mch:Mchl_4744 putative superfamily I DNA and RNA helicase protein; hypothetical protein complement(2166431..2170930) Jonesia denitrificans DSM 20603 8381134 YP_003161917.1 CDS Jden_1975 NC_013174.1 2171565 2172320 D hypothetical protein 2171565..2172320 Jonesia denitrificans DSM 20603 8381135 YP_003161918.1 CDS Jden_1976 NC_013174.1 2172572 2172925 R TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bca:BCE_0414 bacteriophage phi-105 protein- like protein; toxin secretion/phage lysis holin complement(2172572..2172925) Jonesia denitrificans DSM 20603 8381136 YP_003161919.1 CDS Jden_1977 NC_013174.1 2173184 2173645 D hypothetical protein 2173184..2173645 Jonesia denitrificans DSM 20603 8381137 YP_003161920.1 CDS Jden_1978 NC_013174.1 2173642 2174121 R hypothetical protein complement(2173642..2174121) Jonesia denitrificans DSM 20603 8381138 YP_003161921.1 CDS Jden_1979 NC_013174.1 2174567 2174755 D hypothetical protein 2174567..2174755 Jonesia denitrificans DSM 20603 8381139 YP_003161922.1 CDS Jden_1980 NC_013174.1 2175120 2176643 R KEGG: abu:Abu_0796 hypothetical protein; hypothetical protein complement(2175120..2176643) Jonesia denitrificans DSM 20603 8381140 YP_003161923.1 CDS Jden_1982 NC_013174.1 2177303 2177863 R hypothetical protein complement(2177303..2177863) Jonesia denitrificans DSM 20603 8381813 YP_003161924.1 CDS Jden_1983 NC_013174.1 2178153 2178593 D PFAM: OsmC family protein; OsmC family protein 2178153..2178593 Jonesia denitrificans DSM 20603 8381142 YP_003161925.1 CDS Jden_1984 NC_013174.1 2178666 2178839 R hypothetical protein complement(2178666..2178839) Jonesia denitrificans DSM 20603 8381143 YP_003161926.1 CDS Jden_1985 NC_013174.1 2179306 2180055 D KEGG: spc:Sputcn32_2914 hypothetical protein; hypothetical protein 2179306..2180055 Jonesia denitrificans DSM 20603 8381144 YP_003161927.1 CDS Jden_1986 NC_013174.1 2180081 2181034 R PFAM: UspA domain protein; KEGG: tgr:Tgr7_3238 universal stress protein; UspA domain-containing protein complement(2180081..2181034) Jonesia denitrificans DSM 20603 8381145 YP_003161928.1 CDS Jden_1987 NC_013174.1 2181204 2182019 R PFAM: NLP/P60 protein; KEGG: bha:BH3671 cell wall lytic activity; NLP/P60 protein complement(2181204..2182019) Jonesia denitrificans DSM 20603 8381146 YP_003161929.1 CDS Jden_1988 NC_013174.1 2182230 2182430 D hypothetical protein 2182230..2182430 Jonesia denitrificans DSM 20603 8381147 YP_003161930.1 CDS Jden_1989 NC_013174.1 2182380 2183084 R PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: sus:Acid_2178 DtxR family iron dependent repressor; DtxR family iron (metal) dependent repressor complement(2182380..2183084) Jonesia denitrificans DSM 20603 8381148 YP_003161931.1 CDS Jden_1990 NC_013174.1 2183254 2184372 D KEGG: zmo:ZMO1684 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2183254..2184372 Jonesia denitrificans DSM 20603 8381149 YP_003161932.1 CDS Jden_1991 NC_013174.1 2184369 2185721 R PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(2184369..2185721) Jonesia denitrificans DSM 20603 8381150 YP_003161933.1 CDS Jden_1992 NC_013174.1 2185718 2186158 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator; transcriptional regulator, MarR family complement(2185718..2186158) Jonesia denitrificans DSM 20603 8381151 YP_003161934.1 CDS Jden_1993 NC_013174.1 2186234 2187499 R TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: scl:sce4699 mannose-6-phosphate isomerase; mannose-6-phosphate isomerase complement(2186234..2187499) Jonesia denitrificans DSM 20603 8381152 YP_003161935.1 CDS Jden_1994 NC_013174.1 2187577 2187870 R hypothetical protein complement(2187577..2187870) Jonesia denitrificans DSM 20603 8381153 YP_003161936.1 CDS Jden_1995 NC_013174.1 2187936 2189120 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2187936..2189120 Jonesia denitrificans DSM 20603 8381154 YP_003161937.1 CDS Jden_1996 NC_013174.1 2189239 2190795 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: afw:Anae109_3412 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(2189239..2190795) Jonesia denitrificans DSM 20603 8381155 YP_003161938.1 CDS Jden_1997 NC_013174.1 2190914 2191420 R hypothetical protein complement(2190914..2191420) Jonesia denitrificans DSM 20603 8381156 YP_003161939.1 CDS Jden_1998 NC_013174.1 2191417 2191779 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mgm:Mmc1_3585 response regulator receiver protein; response regulator receiver protein complement(2191417..2191779) Jonesia denitrificans DSM 20603 8381157 YP_003161940.1 CDS Jden_1999 NC_013174.1 2191795 2192283 R KEGG: ppd:Ppro_3420 hypothetical protein; hypothetical protein complement(2191795..2192283) Jonesia denitrificans DSM 20603 8381158 YP_003161941.1 CDS Jden_2000 NC_013174.1 2192280 2192663 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY; response regulator receiver protein complement(2192280..2192663) Jonesia denitrificans DSM 20603 8381159 YP_003161942.1 CDS Jden_2001 NC_013174.1 2192665 2193495 R KEGG: bra:BRADO7000 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR complement(2192665..2193495) Jonesia denitrificans DSM 20603 8381160 YP_003161943.1 CDS Jden_2002 NC_013174.1 2193492 2194649 R KEGG: aba:Acid345_1528 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase complement(2193492..2194649) Jonesia denitrificans DSM 20603 8381161 YP_003161944.1 CDS Jden_2003 NC_013174.1 2194787 2195209 R PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rce:RC1_1757 purine-binding chemotaxis protein CheW, putative; CheW protein complement(2194787..2195209) Jonesia denitrificans DSM 20603 8381162 YP_003161945.1 CDS Jden_2004 NC_013174.1 2195209 2197599 R PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(2195209..2197599) Jonesia denitrificans DSM 20603 8381163 YP_003161946.1 CDS Jden_2005 NC_013174.1 2197690 2197968 R TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: xcb:XC_2506 carbon storage regulator; carbon storage regulator CsrA complement(2197690..2197968) Jonesia denitrificans DSM 20603 8381164 YP_003161947.1 CDS Jden_2006 NC_013174.1 2197979 2199400 R KEGG: GK19423 gene product from transcript GK19423- RA; hypothetical protein complement(2197979..2199400) Jonesia denitrificans DSM 20603 8381165 YP_003161948.1 CDS Jden_2007 NC_013174.1 2199378 2201441 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: pca:Pcar_1162 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(2199378..2201441) Jonesia denitrificans DSM 20603 8381166 YP_003161949.1 CDS Jden_2008 NC_013174.1 2201428 2202570 R PFAM: type III secretion exporter; KEGG: bvi:Bcep1808_0227 flagellar biosynthesis protein FlhB; type III secretion exporter complement(2201428..2202570) Jonesia denitrificans DSM 20603 8381167 YP_003161950.1 CDS Jden_2009 NC_013174.1 2202567 2203328 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: bbr:BB2576 flagellar biosynthetic protein; flagellar biosynthetic protein FliR complement(2202567..2203328) Jonesia denitrificans DSM 20603 8381168 YP_003161951.1 CDS Jden_2010 NC_013174.1 2203330 2203602 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: tgr:Tgr7_1332 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(2203330..2203602) Jonesia denitrificans DSM 20603 8381169 YP_003161952.1 CDS Jden_2011 NC_013174.1 2203612 2204442 R KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(2203612..2204442) Jonesia denitrificans DSM 20603 8381170 YP_003161953.1 CDS Jden_2012 NC_013174.1 2204448 2205071 R hypothetical protein complement(2204448..2205071) Jonesia denitrificans DSM 20603 8381171 YP_003161954.1 CDS Jden_2013 NC_013174.1 2205071 2205850 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpi:Rpic_4755 flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(2205071..2205850) Jonesia denitrificans DSM 20603 8381172 YP_003161955.1 CDS Jden_2014 NC_013174.1 2205850 2206776 R PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: sat:SYN_02837 flagellar motor switch protein; flagellar motor switch protein FliM complement(2205850..2206776) Jonesia denitrificans DSM 20603 8381173 YP_003161956.1 CDS Jden_2015 NC_013174.1 2206888 2207403 R PFAM: flagellar basal body-associated protein FliL; KEGG: bph:Bphy_2937 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(2206888..2207403) Jonesia denitrificans DSM 20603 8381174 YP_003161957.1 CDS Jden_2016 NC_013174.1 2207393 2208310 R PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU3028 chemotaxis MotB protein; OmpA/MotB domain-containing protein complement(2207393..2208310) Jonesia denitrificans DSM 20603 8381175 YP_003161958.1 CDS Jden_2017 NC_013174.1 2208307 2209092 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mms:mma_2082 MotA chemotaxis protein; MotA/TolQ/ExbB proton channel complement(2208307..2209092) Jonesia denitrificans DSM 20603 8381176 YP_003161959.1 CDS Jden_2018 NC_013174.1 2209092 2209355 R PFAM: flagellar FlbD family protein; KEGG: gme:Gmet_0462 flagellar protein; flagellar FlbD family protein complement(2209092..2209355) Jonesia denitrificans DSM 20603 8381177 YP_003161960.1 CDS Jden_2019 NC_013174.1 2209457 2210650 R PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; KEGG: aba:Acid345_1645 flagellar basal body FlaE; hypothetical protein complement(2209457..2210650) Jonesia denitrificans DSM 20603 8381178 YP_003161961.1 CDS Jden_2020 NC_013174.1 2210677 2211162 R PFAM: flagellar hook capping protein; KEGG: bja:bll6853 flagellar basal body rod modification protein; flagellar hook capping protein complement(2210677..2211162) Jonesia denitrificans DSM 20603 8381179 YP_003161962.1 CDS Jden_2021 NC_013174.1 2211171 2212550 R KEGG: bpa:BPP1505 flagellar hook-length control protein; hypothetical protein complement(2211171..2212550) Jonesia denitrificans DSM 20603 8381180 YP_003161963.1 CDS Jden_2022 NC_013174.1 2212547 2213275 R PFAM: NLP/P60 protein; KEGG: csa:Csal_0184 NLP/P60; NLP/P60 protein complement(2212547..2213275) Jonesia denitrificans DSM 20603 8381181 YP_003161964.1 CDS Jden_2023 NC_013174.1 2213265 2213720 R PFAM: flagellar FliJ protein; KEGG: dal:Dalk_5199 hypothetical protein; flagellar FliJ protein complement(2213265..2213720) Jonesia denitrificans DSM 20603 8381182 YP_003161965.1 CDS Jden_2024 NC_013174.1 2213745 2215085 R KEGG: dvu:DVU0310 flagellum-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase complement(2213745..2215085) Jonesia denitrificans DSM 20603 8381183 YP_003161966.1 CDS Jden_2025 NC_013174.1 2215082 2215783 R KEGG: afw:Anae109_2217 flagellar assembly protein FliH, putative; hypothetical protein complement(2215082..2215783) Jonesia denitrificans DSM 20603 8381184 YP_003161967.1 CDS Jden_2026 NC_013174.1 2215767 2216792 R TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bsu:BSU16220 flagellar motor switch protein G; flagellar motor switch protein FliG complement(2215767..2216792) Jonesia denitrificans DSM 20603 8381185 YP_003161968.1 CDS Jden_2027 NC_013174.1 2216789 2218393 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: bvi:Bcep1808_3149 flagellar MS-ring protein; flagellar M-ring protein FliF complement(2216789..2218393) Jonesia denitrificans DSM 20603 8381186 YP_003161969.1 CDS Jden_2028 NC_013174.1 2218393 2218725 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: bha:BH2459 flagellar hook-basal body protein FliE; flagellar hook-basal body complex subunit FliE complement(2218393..2218725) Jonesia denitrificans DSM 20603 8381187 YP_003161970.1 CDS Jden_2029 NC_013174.1 2218725 2219129 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bcz:BCZK1521 flagellar basal body rod protein FlgC; flagellar basal body rod protein complement(2218725..2219129) Jonesia denitrificans DSM 20603 8381188 YP_003161971.1 CDS Jden_2030 NC_013174.1 2219129 2219470 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: aba:Acid345_1655 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB complement(2219129..2219470) Jonesia denitrificans DSM 20603 8381189 YP_003161972.1 CDS Jden_2031 NC_013174.1 2219463 2219639 R hypothetical protein complement(2219463..2219639) Jonesia denitrificans DSM 20603 8381190 YP_003161973.1 CDS Jden_2032 NC_013174.1 2219645 2220022 R hypothetical protein complement(2219645..2220022) Jonesia denitrificans DSM 20603 8381191 YP_003161974.1 CDS Jden_2033 NC_013174.1 2220000 2220461 R TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: bha:BH3613 flagellar protein FliS; flagellar protein FliS complement(2220000..2220461) Jonesia denitrificans DSM 20603 8381192 YP_003161975.1 CDS Jden_2034 NC_013174.1 2220474 2221823 R PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook- associated protein 2 domain protein; KEGG: neu:NE1595 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein complement(2220474..2221823) Jonesia denitrificans DSM 20603 8381193 YP_003161976.1 CDS Jden_2035 NC_013174.1 2221999 2222886 R PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin; flagellin domain-containing protein complement(2221999..2222886) Jonesia denitrificans DSM 20603 8381194 YP_003161977.1 CDS Jden_2036 NC_013174.1 2223041 2223955 R PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin; flagellin domain-containing protein complement(2223041..2223955) Jonesia denitrificans DSM 20603 8381195 YP_003161978.1 CDS Jden_2037 NC_013174.1 2224123 2225004 R PFAM: flagellin domain protein; KEGG: gsu:GSU3038 flagellin FliC; flagellin domain-containing protein complement(2224123..2225004) Jonesia denitrificans DSM 20603 8381196 YP_003161979.1 CDS Jden_2038 NC_013174.1 2225159 2226046 R PFAM: flagellin domain protein; KEGG: gsu:GSU3038 flagellin FliC; flagellin domain-containing protein complement(2225159..2226046) Jonesia denitrificans DSM 20603 8381197 YP_003161980.1 CDS Jden_2039 NC_013174.1 2226154 2227200 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gur:Gura_4108 RNA polymerase, sigma 28 subunit, FliA/WhiG; FliA/WhiG subfamily RNA polymerase sigma-28 subunit complement(2226154..2227200) Jonesia denitrificans DSM 20603 8381198 YP_003161981.1 CDS Jden_2040 NC_013174.1 2227501 2227986 D PFAM: FlgN family protein; FlgN family protein 2227501..2227986 Jonesia denitrificans DSM 20603 8381199 YP_003161982.1 CDS Jden_2041 NC_013174.1 2227995 2229386 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 2227995..2229386 Jonesia denitrificans DSM 20603 8381200 YP_003161983.1 CDS Jden_2042 NC_013174.1 2229383 2230300 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: bsu:BSU35400 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 2229383..2230300 Jonesia denitrificans DSM 20603 8381201 YP_003161984.1 CDS Jden_2043 NC_013174.1 2230297 2230668 D PFAM: protein of unknown function DUF180; KEGG: sat:SYN_02809 transmembrane protein; hypothetical protein 2230297..2230668 Jonesia denitrificans DSM 20603 8381202 YP_003161985.1 CDS Jden_2044 NC_013174.1 2230725 2231921 D PFAM: Metal-dependent hydrolase HDOD; KEGG: cja:CJA_1814 putative signal transduction protein containing EAL and modified HD-GYP domains; putative signal transduction protein 2230725..2231921 Jonesia denitrificans DSM 20603 8381203 YP_003161986.1 CDS Jden_2045 NC_013174.1 2231893 2232960 R KEGG: Liprin-alpha 2; hypothetical protein complement(2231893..2232960) Jonesia denitrificans DSM 20603 8381204 YP_003161987.1 CDS Jden_2046 NC_013174.1 2233059 2233838 R hypothetical protein complement(2233059..2233838) Jonesia denitrificans DSM 20603 8381205 YP_003161988.1 CDS Jden_2047 NC_013174.1 2233845 2234228 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: vok:COSY_0845 cold shock protein; cold-shock DNA-binding domain-containing protein complement(2233845..2234228) Jonesia denitrificans DSM 20603 8381206 YP_003161989.1 CDS Jden_2048 NC_013174.1 2234388 2236856 D KEGG: hypothetical protein; hypothetical protein 2234388..2236856 Jonesia denitrificans DSM 20603 8381207 YP_003161990.1 CDS Jden_2049 NC_013174.1 2236853 2238529 D PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: hypothetical protein; K10843 DNA excision repair protein ERCC-3; helicase domain-containing protein 2236853..2238529 Jonesia denitrificans DSM 20603 8381208 YP_003161991.1 CDS Jden_2050 NC_013174.1 2238623 2239201 D KEGG: mxa:MXAN_6701 hypothetical protein; hypothetical protein 2238623..2239201 Jonesia denitrificans DSM 20603 8381209 YP_003161992.1 CDS Jden_2051 NC_013174.1 2239313 2240023 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH3157 two-component response regulator involved in phosphate regulation; two component transcriptional regulator, winged helix family 2239313..2240023 Jonesia denitrificans DSM 20603 8381210 YP_003161993.1 CDS Jden_2052 NC_013174.1 2240038 2241600 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_5478 integral membrane sensor signal transduction histidine kinase; histidine kinase 2240038..2241600 Jonesia denitrificans DSM 20603 8381211 YP_003161994.1 CDS Jden_2053 NC_013174.1 2241769 2242497 D KEGG: hch:HCH_04271 hypothetical protein; hypothetical protein 2241769..2242497 Jonesia denitrificans DSM 20603 8381212 YP_003161995.1 CDS Jden_2054 NC_013174.1 2242630 2242920 D PFAM: protein of unknown function DUF909; hypothetical protein 2242630..2242920 Jonesia denitrificans DSM 20603 8381213 YP_003161996.1 CDS Jden_2055 NC_013174.1 2243028 2244659 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: bcb:BCB4264_A0298 chaperonin GroL; chaperonin GroEL complement(2243028..2244659) Jonesia denitrificans DSM 20603 8381214 YP_003161997.1 CDS Jden_2056 NC_013174.1 2244846 2245328 R PFAM: transcription activator effector binding; KEGG: sdn:Sden_1132 transcription activator, effector binding; transcriptional activator ligand binding domain-containing protein complement(2244846..2245328) Jonesia denitrificans DSM 20603 8381215 YP_003161998.1 CDS Jden_2057 NC_013174.1 2245543 2247006 R PFAM: FAD dependent oxidoreductase; KEGG: acp:A2cp1_0251 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2245543..2247006) Jonesia denitrificans DSM 20603 8381216 YP_003161999.1 CDS Jden_2058 NC_013174.1 2247031 2247570 R KEGG: sit:TM1040_1762 mucin-associated surface protein; hypothetical protein complement(2247031..2247570) Jonesia denitrificans DSM 20603 8381217 YP_003162000.1 CDS Jden_2059 NC_013174.1 2247861 2248154 R hypothetical protein complement(2247861..2248154) Jonesia denitrificans DSM 20603 8381218 YP_003162001.1 CDS Jden_2060 NC_013174.1 2248310 2249155 D PFAM: lipolytic protein G-D-S-L family; KEGG: bcb:BCB4264_A2458 hypothetical protein; G-D-S-L family lipolytic protein 2248310..2249155 Jonesia denitrificans DSM 20603 8381219 YP_003162002.1 CDS Jden_2061 NC_013174.1 2249391 2250230 R KEGG: scl:sce2958 putative secreted protein; hypothetical protein complement(2249391..2250230) Jonesia denitrificans DSM 20603 8381814 YP_003162003.1 CDS Jden_2062 NC_013174.1 2250356 2252209 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: afw:Anae109_2094 protein kinase; serine/threonine protein kinase complement(2250356..2252209) Jonesia denitrificans DSM 20603 8381221 YP_003162004.1 CDS Jden_2063 NC_013174.1 2252309 2253808 D PFAM: glycosyl transferase family 20; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase (UDP- forming) 2252309..2253808 Jonesia denitrificans DSM 20603 8381222 YP_003162005.1 CDS Jden_2064 NC_013174.1 2253805 2254611 D TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ank:AnaeK_1152 HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase 2253805..2254611 Jonesia denitrificans DSM 20603 8381223 YP_003162006.1 CDS Jden_2065 NC_013174.1 2254780 2255880 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bsu:BSU38810 multiple sugar-binding transport ATP-binding protein; ABC transporter 2254780..2255880 Jonesia denitrificans DSM 20603 8381224 YP_003162007.1 CDS Jden_2066 NC_013174.1 2256031 2257272 D KEGG: rce:RC1_1749 hypothetical protein; hypothetical protein 2256031..2257272 Jonesia denitrificans DSM 20603 8381225 YP_003162008.1 CDS Jden_2067 NC_013174.1 2257298 2258278 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase complement(2257298..2258278) Jonesia denitrificans DSM 20603 8381226 YP_003162009.1 CDS Jden_2068 NC_013174.1 2258318 2259727 R KEGG: dal:Dalk_0769 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); cysteinyl-tRNA synthetase complement(2258318..2259727) Jonesia denitrificans DSM 20603 8381227 YP_003162010.1 CDS Jden_2069 NC_013174.1 2259845 2262127 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: esa:ESA_02100 hypothetical protein; glycoside hydrolase family 3 complement(2259845..2262127) Jonesia denitrificans DSM 20603 8381228 YP_003162011.1 CDS Jden_2070 NC_013174.1 2262166 2263059 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02026 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(2262166..2263059) Jonesia denitrificans DSM 20603 8381229 YP_003162012.1 CDS Jden_2071 NC_013174.1 2263056 2264093 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(2263056..2264093) Jonesia denitrificans DSM 20603 8381230 YP_003162013.1 CDS Jden_2072 NC_013174.1 2264103 2265398 R PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc02471 putative periplasmic binding ABC transporter protein; extracellular solute-binding protein complement(2264103..2265398) Jonesia denitrificans DSM 20603 8381231 YP_003162014.1 CDS Jden_2073 NC_013174.1 2265554 2266564 D PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator, LacI family 2265554..2266564 Jonesia denitrificans DSM 20603 8381232 YP_003162015.1 CDS Jden_2074 NC_013174.1 2266599 2267120 R KEGG: eli:ELI_06290 bifunctional 2-C-methyl-D- erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D- erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2266599..2267120) Jonesia denitrificans DSM 20603 8381233 YP_003162016.1 CDS Jden_2075 NC_013174.1 2267117 2267905 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: azc:AZC_3089 4-diphosphocytidyl-2C-methyl-D- erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(2267117..2267905) Jonesia denitrificans DSM 20603 8381234 YP_003162017.1 CDS Jden_2076 NC_013174.1 2267902 2269299 R hypothetical protein complement(2267902..2269299) Jonesia denitrificans DSM 20603 8381235 YP_003162018.1 CDS Jden_2077 NC_013174.1 2269416 2269901 R PFAM: transcription factor CarD; KEGG: bcb:BCB4264_A4827 transcriptional regulator, CarD family; BadM/Rrf2 family transcriptional regulator complement(2269416..2269901) Jonesia denitrificans DSM 20603 8381236 YP_003162019.1 CDS Jden_2078 NC_013174.1 2270132 2270617 D KEGG: bmj:BMULJ_04809 cable pili-associated 22 kDa adhesin protein; cable pili-associated 22 kDa adhesin protein 2270132..2270617 Jonesia denitrificans DSM 20603 8381237 YP_003162020.1 CDS Jden_2079 NC_013174.1 2270707 2271486 R KEGG: gme:Gmet_2704 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(2270707..2271486) Jonesia denitrificans DSM 20603 8381238 YP_003162021.1 CDS Jden_2080 NC_013174.1 2271516 2272589 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0371 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease complement(2271516..2272589) Jonesia denitrificans DSM 20603 8381239 YP_003162022.1 CDS Jden_2081 NC_013174.1 2272589 2273650 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_2702 phosphate ABC transporter permease; phosphate ABC transporter permease complement(2272589..2273650) Jonesia denitrificans DSM 20603 8381240 YP_003162023.1 CDS Jden_2082 NC_013174.1 2273757 2274902 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gdj:Gdia_2690 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein complement(2273757..2274902) Jonesia denitrificans DSM 20603 8381241 YP_003162024.1 CDS Jden_2083 NC_013174.1 2275074 2275787 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_4006 two component transcriptional regulator; two component transcriptional regulator, winged helix family complement(2275074..2275787) Jonesia denitrificans DSM 20603 8381242 YP_003162025.1 CDS Jden_2084 NC_013174.1 2275784 2276965 R KEGG: hha:Hhal_0097 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase complement(2275784..2276965) Jonesia denitrificans DSM 20603 8381243 YP_003162026.1 CDS Jden_2085 NC_013174.1 2277178 2277846 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mlo:mlr5643 phosphate regulon transcriptional regulator, PhoU; phosphate uptake regulator PhoU 2277178..2277846 Jonesia denitrificans DSM 20603 8381244 YP_003162027.1 CDS Jden_2086 NC_013174.1 2277977 2278723 R KEGG: GPM1; phosphoglycerate mutase similar to S. cerevisiae GPM1 (YKL152C); glycolysis; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(2277977..2278723) Jonesia denitrificans DSM 20603 8381245 YP_003162028.1 CDS Jden_2087 NC_013174.1 2278788 2280062 R TIGRFAM: UDP-N-acetylglucosamine; PFAM: glycosyl transferase group 1; KEGG: cti:RALTA_A0583 putative glycosyl transferase, group 1; D-inositol-3-phosphate glycosyltransferase complement(2278788..2280062) Jonesia denitrificans DSM 20603 8381246 YP_003162029.1 CDS Jden_2089 NC_013174.1 2280555 2281691 R KEGG: hypothetical protein; hypothetical protein complement(2280555..2281691) Jonesia denitrificans DSM 20603 8381815 YP_003162030.1 CDS Jden_2090 NC_013174.1 2281868 2282197 R hypothetical protein complement(2281868..2282197) Jonesia denitrificans DSM 20603 8381248 YP_003162031.1 CDS Jden_2091 NC_013174.1 2282279 2282458 R hypothetical protein complement(2282279..2282458) Jonesia denitrificans DSM 20603 8381249 YP_003162032.1 CDS Jden_2092 NC_013174.1 2282502 2284049 R KEGG: kpn:KPN_03318 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase complement(2282502..2284049) Jonesia denitrificans DSM 20603 8381250 YP_003162033.1 CDS Jden_2093 NC_013174.1 2284156 2285079 R KEGG: mag:amb3885 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(2284156..2285079) Jonesia denitrificans DSM 20603 8381251 YP_003162034.1 CDS Jden_2094 NC_013174.1 2285082 2286851 R KEGG: aba:Acid345_2250 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; L-aspartate oxidase complement(2285082..2286851) Jonesia denitrificans DSM 20603 8381252 YP_003162035.1 CDS Jden_2095 NC_013174.1 2286848 2287285 R KEGG: gbm:Gbem_3010 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase complement(2286848..2287285) Jonesia denitrificans DSM 20603 8381253 YP_003162036.1 CDS Jden_2096 NC_013174.1 2287329 2288237 R KEGG: sal:Sala_3003 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase complement(2287329..2288237) Jonesia denitrificans DSM 20603 8381254 YP_003162037.1 CDS Jden_2097 NC_013174.1 2288234 2289217 R PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rpi:Rpic_4547 NADP oxidoreductase coenzyme F420-dependent; coenzyme F420-dependent NADP oxidoreductase complement(2288234..2289217) Jonesia denitrificans DSM 20603 8381255 YP_003162038.1 CDS Jden_2098 NC_013174.1 2289231 2290907 R PFAM: membrane-flanked domain protein; KEGG: sal:Sala_3015 membrane-flanked domain protein- containing protein; membrane-flanked domain-containing protein complement(2289231..2290907) Jonesia denitrificans DSM 20603 8381256 YP_003162039.1 CDS Jden_2099 NC_013174.1 2290919 2291416 R PFAM: membrane-flanked domain protein; KEGG: eli:ELI_13595 hypothetical protein; membrane-flanked domain-containing protein complement(2290919..2291416) Jonesia denitrificans DSM 20603 8381257 YP_003162040.1 CDS Jden_2100 NC_013174.1 2291464 2291949 R hypothetical protein complement(2291464..2291949) Jonesia denitrificans DSM 20603 8381258 YP_003162041.1 CDS Jden_2101 NC_013174.1 2291954 2294479 R TIGRFAM: 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; dihydroneopterin aldolase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; dihydroneopterin aldolase; KEGG: pca:Pcar_0250 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2291954..2294479) Jonesia denitrificans DSM 20603 8381259 YP_003162042.1 CDS Jden_2102 NC_013174.1 2294677 2295534 R KEGG: afw:Anae109_2337 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2294677..2295534) Jonesia denitrificans DSM 20603 8381260 YP_003162043.1 CDS Jden_2103 NC_013174.1 2295553 2296155 R KEGG: bcy:Bcer98_1234 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I complement(2295553..2296155) Jonesia denitrificans DSM 20603 8381261 YP_003162044.1 CDS Jden_2104 NC_013174.1 2296164 2298197 R KEGG: bsu:BSU00690 cell-division protein and general stress protein (class III heat-shock); TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(2296164..2298197) Jonesia denitrificans DSM 20603 8381262 YP_003162045.1 CDS Jden_2105 NC_013174.1 2298392 2298943 R KEGG: bcb:BCB4264_A0071 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(2298392..2298943) Jonesia denitrificans DSM 20603 8381263 YP_003162046.1 CDS Jden_2106 NC_013174.1 2298986 2300005 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: afw:Anae109_2339 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(2298986..2300005) Jonesia denitrificans DSM 20603 8381264 YP_003162047.1 CDS Jden_2107 NC_013174.1 2300011 2301123 R hypothetical protein complement(2300011..2301123) Jonesia denitrificans DSM 20603 8381265 YP_003162048.1 CDS Jden_2108 NC_013174.1 2301108 2302538 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: gbm:Gbem_3581 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; D-alanyl-D-alanine carboxypeptidase complement(2301108..2302538) Jonesia denitrificans DSM 20603 8381266 YP_003162049.1 CDS Jden_2109 NC_013174.1 2302777 2303289 D PFAM: Inorganic pyrophosphatase; KEGG: gdj:Gdia_2890 inorganic diphosphatase; inorganic diphosphatase 2302777..2303289 Jonesia denitrificans DSM 20603 8381267 YP_003162050.1 CDS Jden_2110 NC_013174.1 2303392 2304867 R PFAM: NLP/P60 protein; KEGG: bte:BTH_II0129 rhs element Vgr protein; NLP/P60 protein complement(2303392..2304867) Jonesia denitrificans DSM 20603 8381268 YP_003162051.1 CDS Jden_2111 NC_013174.1 2305301 2306623 D KEGG: bha:BH2603 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 2305301..2306623 Jonesia denitrificans DSM 20603 8381269 YP_003162052.1 CDS Jden_2112 NC_013174.1 2306764 2308017 D KEGG: azc:AZC_0229 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold protein; homoserine O-acetyltransferase 2306764..2308017 Jonesia denitrificans DSM 20603 8381270 YP_003162053.1 CDS Jden_2113 NC_013174.1 2308050 2308781 D hypothetical protein 2308050..2308781 Jonesia denitrificans DSM 20603 8381271 YP_003162054.1 CDS Jden_2114 NC_013174.1 2308869 2309846 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2170 putative oxidoreductase; Alcohol dehydrogenase zinc-binding domain-containing protein 2308869..2309846 Jonesia denitrificans DSM 20603 8381272 YP_003162055.1 CDS Jden_2115 NC_013174.1 2309788 2310810 D KEGG: abm:ABSDF1640 hypothetical protein; hypothetical protein 2309788..2310810 Jonesia denitrificans DSM 20603 8381273 YP_003162056.1 CDS Jden_2116 NC_013174.1 2310807 2311106 R PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77; hypothetical protein complement(2310807..2311106) Jonesia denitrificans DSM 20603 8381274 YP_003162057.1 CDS Jden_2117 NC_013174.1 2311160 2314081 R PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ank:AnaeK_0858 FAD linked oxidase domain protein; D-lactate dehydrogenase complement(2311160..2314081) Jonesia denitrificans DSM 20603 8381275 YP_003162058.1 CDS Jden_2118 NC_013174.1 2314289 2315068 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit; ABC transporter 2314289..2315068 Jonesia denitrificans DSM 20603 8381276 YP_003162059.1 CDS Jden_2119 NC_013174.1 2315068 2317689 D PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1658 hypothetical protein; hypothetical protein 2315068..2317689 Jonesia denitrificans DSM 20603 8381277 YP_003162060.1 CDS Jden_2120 NC_013174.1 2318014 2318970 D KEGG: proteophosphoglycan 5; hypothetical protein 2318014..2318970 Jonesia denitrificans DSM 20603 8381278 YP_003162061.1 CDS Jden_2121 NC_013174.1 2318927 2320309 R KEGG: mms:mma_1616 large exoproteins involved in heme utilization or adhesion; hypothetical protein complement(2318927..2320309) Jonesia denitrificans DSM 20603 8381279 YP_003162062.1 CDS Jden_2122 NC_013174.1 2320379 2320921 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pag:PLES_16511 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(2320379..2320921) Jonesia denitrificans DSM 20603 8381280 YP_003162063.1 CDS Jden_2123 NC_013174.1 2321142 2322128 R TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: hypothetical protein; LPXTG-motif cell wall anchor domain-containing protein complement(2321142..2322128) Jonesia denitrificans DSM 20603 8381281 YP_003162064.1 CDS Jden_2124 NC_013174.1 2322679 2323419 D PFAM: YceI family protein; KEGG: ppr:PBPRB0399 hypothetical protein; hypothetical protein 2322679..2323419 Jonesia denitrificans DSM 20603 8381282 YP_003162065.1 CDS Jden_2125 NC_013174.1 2323584 2324678 D PFAM: glycosyl hydrolase 53 domain protein; KEGG: sde:Sde_3710 arabinogalactan endo-1,4-beta- galactosidase; arabinogalactan endo-1,4-beta-galactosidase 2323584..2324678 Jonesia denitrificans DSM 20603 8381283 YP_003162066.1 CDS Jden_2126 NC_013174.1 2324963 2326150 D PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; integrase family protein 2324963..2326150 Jonesia denitrificans DSM 20603 8381816 YP_003162067.1 CDS Jden_2127 NC_013174.1 2326197 2326688 R hypothetical protein complement(2326197..2326688) Jonesia denitrificans DSM 20603 8381285 YP_003162068.1 CDS Jden_2128 NC_013174.1 2326685 2327065 R PFAM: protein of unknown function DUF955; hypothetical protein complement(2326685..2327065) Jonesia denitrificans DSM 20603 8381286 YP_003162069.1 CDS Jden_2129 NC_013174.1 2327074 2327502 R hypothetical protein complement(2327074..2327502) Jonesia denitrificans DSM 20603 8381287 YP_003162070.1 CDS Jden_2130 NC_013174.1 2327636 2327866 D hypothetical protein 2327636..2327866 Jonesia denitrificans DSM 20603 8381288 YP_003162071.1 CDS Jden_2131 NC_013174.1 2327945 2328211 D hypothetical protein 2327945..2328211 Jonesia denitrificans DSM 20603 8381289 YP_003162072.1 CDS Jden_2132 NC_013174.1 2328208 2328384 D hypothetical protein 2328208..2328384 Jonesia denitrificans DSM 20603 8381290 YP_003162073.1 CDS Jden_2133 NC_013174.1 2328491 2329225 D PFAM: phage antirepressor protein; BRO domain protein; KEGG: bcj:BCAM1879 hypothetical protein; phage antirepressor protein 2328491..2329225 Jonesia denitrificans DSM 20603 8381291 YP_003162074.1 CDS Jden_2134 NC_013174.1 2329222 2329413 D hypothetical protein 2329222..2329413 Jonesia denitrificans DSM 20603 8381292 YP_003162075.1 CDS Jden_2135 NC_013174.1 2329423 2329518 D hypothetical protein 2329423..2329518 Jonesia denitrificans DSM 20603 8381293 YP_003162076.1 CDS Jden_2136 NC_013174.1 2329515 2330573 D KEGG: hypothetical protein LOC690110; hypothetical protein 2329515..2330573 Jonesia denitrificans DSM 20603 8381294 YP_003162077.1 CDS Jden_2137 NC_013174.1 2330570 2330701 D hypothetical protein 2330570..2330701 Jonesia denitrificans DSM 20603 8381295 YP_003162078.1 CDS Jden_2138 NC_013174.1 2330698 2330856 D hypothetical protein 2330698..2330856 Jonesia denitrificans DSM 20603 8381296 YP_003162079.1 CDS Jden_2139 NC_013174.1 2330843 2330944 D hypothetical protein 2330843..2330944 Jonesia denitrificans DSM 20603 8381297 YP_003162080.1 CDS Jden_2140 NC_013174.1 2330941 2331225 D hypothetical protein 2330941..2331225 Jonesia denitrificans DSM 20603 8381298 YP_003162081.1 CDS Jden_2141 NC_013174.1 2331215 2331892 D KEGG: rsq:Rsph17025_1818 hypothetical protein; hypothetical protein 2331215..2331892 Jonesia denitrificans DSM 20603 8381299 YP_003162082.1 CDS Jden_2142 NC_013174.1 2331892 2332425 D KEGG: mex:Mext_4385 hypothetical protein; hypothetical protein 2331892..2332425 Jonesia denitrificans DSM 20603 8381300 YP_003162083.1 CDS Jden_2143 NC_013174.1 2332422 2332634 D hypothetical protein 2332422..2332634 Jonesia denitrificans DSM 20603 8381301 YP_003162084.1 CDS Jden_2144 NC_013174.1 2332609 2332743 D hypothetical protein 2332609..2332743 Jonesia denitrificans DSM 20603 8381302 YP_003162085.1 CDS Jden_2145 NC_013174.1 2332740 2332991 D PFAM: glutaredoxin; KEGG: yen:YE0929 putative glutaredoxin; glutaredoxin 2332740..2332991 Jonesia denitrificans DSM 20603 8381303 YP_003162086.1 CDS Jden_2146 NC_013174.1 2332993 2333406 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvm:DvMF_0813 single-strand binding protein; single-strand binding protein 2332993..2333406 Jonesia denitrificans DSM 20603 8381304 YP_003162087.1 CDS Jden_2147 NC_013174.1 2333524 2333877 D hypothetical protein 2333524..2333877 Jonesia denitrificans DSM 20603 8381305 YP_003162088.1 CDS Jden_2148 NC_013174.1 2333874 2334338 D KEGG: mag:amb2718 hypothetical protein; hypothetical protein 2333874..2334338 Jonesia denitrificans DSM 20603 8381306 YP_003162089.1 CDS Jden_2149 NC_013174.1 2334328 2334723 D PFAM: endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 2334328..2334723 Jonesia denitrificans DSM 20603 8381307 YP_003162090.1 CDS Jden_2150 NC_013174.1 2334842 2335027 D hypothetical protein 2334842..2335027 Jonesia denitrificans DSM 20603 8381308 YP_003162091.1 CDS Jden_2151 NC_013174.1 2335024 2335389 D PFAM: transcription factor WhiB; transcription factor WhiB 2335024..2335389 Jonesia denitrificans DSM 20603 8381309 YP_003162092.1 CDS Jden_2152 NC_013174.1 2335386 2335637 D hypothetical protein 2335386..2335637 Jonesia denitrificans DSM 20603 8381310 YP_003162093.1 CDS Jden_2153 NC_013174.1 2335627 2336583 D KEGG: bcb:BCB4264_A0982 DnaD domain protein; hypothetical protein 2335627..2336583 Jonesia denitrificans DSM 20603 8381311 YP_003162094.1 CDS Jden_2154 NC_013174.1 2336580 2336939 D hypothetical protein 2336580..2336939 Jonesia denitrificans DSM 20603 8381312 YP_003162095.1 CDS Jden_2155 NC_013174.1 2336936 2338219 D PFAM: DnaB domain protein helicase domain protein; KEGG: bba:Bd0038 hypothetical protein; DnaB domain-containing protein helicase domain-containing protein 2336936..2338219 Jonesia denitrificans DSM 20603 8381313 YP_003162096.1 CDS Jden_2156 NC_013174.1 2338216 2338419 D hypothetical protein 2338216..2338419 Jonesia denitrificans DSM 20603 8381314 YP_003162097.1 CDS Jden_2157 NC_013174.1 2338565 2338837 D hypothetical protein 2338565..2338837 Jonesia denitrificans DSM 20603 8381315 YP_003162098.1 CDS Jden_2158 NC_013174.1 2338834 2339115 D hypothetical protein 2338834..2339115 Jonesia denitrificans DSM 20603 8381316 YP_003162099.1 CDS Jden_2159 NC_013174.1 2339112 2339492 D KEGG: oca:OCAR_5534 hypothetical protein; hypothetical protein 2339112..2339492 Jonesia denitrificans DSM 20603 8381317 YP_003162100.1 CDS Jden_2160 NC_013174.1 2339698 2340252 D hypothetical protein 2339698..2340252 Jonesia denitrificans DSM 20603 8381318 YP_003162101.1 CDS Jden_2161 NC_013174.1 2340565 2340867 D PFAM: HNH endonuclease; HNH endonuclease 2340565..2340867 Jonesia denitrificans DSM 20603 8381319 YP_003162102.1 CDS Jden_2162 NC_013174.1 2340947 2341699 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: Os07g0170200; hypothetical protein; HNH endonuclease 2340947..2341699 Jonesia denitrificans DSM 20603 8381320 YP_003162103.1 CDS Jden_2163 NC_013174.1 2341943 2342512 D KEGG: bte:BTH_I3137 hypothetical protein; hypothetical protein 2341943..2342512 Jonesia denitrificans DSM 20603 8381321 YP_003162104.1 CDS Jden_2164 NC_013174.1 2342561 2342929 D hypothetical protein 2342561..2342929 Jonesia denitrificans DSM 20603 8381322 YP_003162105.1 CDS Jden_2165 NC_013174.1 2342913 2344694 D hypothetical protein 2342913..2344694 Jonesia denitrificans DSM 20603 8381323 YP_003162106.1 CDS Jden_2166 NC_013174.1 2344691 2346025 D PFAM: protein of unknown function DUF1483; hypothetical protein 2344691..2346025 Jonesia denitrificans DSM 20603 8381324 YP_003162107.1 CDS Jden_2167 NC_013174.1 2346025 2346795 D hypothetical protein 2346025..2346795 Jonesia denitrificans DSM 20603 8381325 YP_003162108.1 CDS Jden_2168 NC_013174.1 2346872 2347399 D KEGG: bvi:Bcep1808_1466 translation initiation factor IF-2; hypothetical protein 2346872..2347399 Jonesia denitrificans DSM 20603 8381326 YP_003162109.1 CDS Jden_2169 NC_013174.1 2347402 2348364 D PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein; major capsid protein HK97 2347402..2348364 Jonesia denitrificans DSM 20603 8381327 YP_003162110.1 CDS Jden_2170 NC_013174.1 2348387 2348812 D hypothetical protein 2348387..2348812 Jonesia denitrificans DSM 20603 8381328 YP_003162111.1 CDS Jden_2171 NC_013174.1 2348812 2349261 D hypothetical protein 2348812..2349261 Jonesia denitrificans DSM 20603 8381329 YP_003162112.1 CDS Jden_2172 NC_013174.1 2349258 2349635 D hypothetical protein 2349258..2349635 Jonesia denitrificans DSM 20603 8381330 YP_003162113.1 CDS Jden_2173 NC_013174.1 2349632 2350045 D hypothetical protein 2349632..2350045 Jonesia denitrificans DSM 20603 8381331 YP_003162114.1 CDS Jden_2174 NC_013174.1 2350130 2350657 D hypothetical protein 2350130..2350657 Jonesia denitrificans DSM 20603 8381332 YP_003162115.1 CDS Jden_2175 NC_013174.1 2350805 2351521 D hypothetical protein 2350805..2351521 Jonesia denitrificans DSM 20603 8381333 YP_003162116.1 CDS Jden_2176 NC_013174.1 2351569 2351832 D hypothetical protein 2351569..2351832 Jonesia denitrificans DSM 20603 8381334 YP_003162117.1 CDS Jden_2177 NC_013174.1 2351829 2352119 R hypothetical protein complement(2351829..2352119) Jonesia denitrificans DSM 20603 8381335 YP_003162118.1 CDS Jden_2178 NC_013174.1 2352155 2356183 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dno:DNO_0755 phage tail tape measure family protein; phage tail tape measure protein, TP901 family 2352155..2356183 Jonesia denitrificans DSM 20603 8381336 YP_003162119.1 CDS Jden_2179 NC_013174.1 2356183 2358108 D hypothetical protein 2356183..2358108 Jonesia denitrificans DSM 20603 8381337 YP_003162120.1 CDS Jden_2180 NC_013174.1 2358108 2359280 D hypothetical protein 2358108..2359280 Jonesia denitrificans DSM 20603 8381338 YP_003162121.1 CDS Jden_2181 NC_013174.1 2359277 2360065 D hypothetical protein 2359277..2360065 Jonesia denitrificans DSM 20603 8381339 YP_003162122.1 CDS Jden_2182 NC_013174.1 2360062 2360226 D hypothetical protein 2360062..2360226 Jonesia denitrificans DSM 20603 8381340 YP_003162123.1 CDS Jden_2183 NC_013174.1 2360216 2360770 D KEGG: bmj:BMULJ_00702 collagen alpha chain precursor; hypothetical protein 2360216..2360770 Jonesia denitrificans DSM 20603 8381341 YP_003162124.1 CDS Jden_2184 NC_013174.1 2360770 2361072 D hypothetical protein 2360770..2361072 Jonesia denitrificans DSM 20603 8381342 YP_003162125.1 CDS Jden_2185 NC_013174.1 2361137 2361976 D PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2361137..2361976 Jonesia denitrificans DSM 20603 8381343 YP_003162126.1 CDS Jden_2186 NC_013174.1 2361988 2362203 D hypothetical protein 2361988..2362203 Jonesia denitrificans DSM 20603 8381344 YP_003162127.1 CDS Jden_2187 NC_013174.1 2362190 2362426 D hypothetical protein 2362190..2362426 Jonesia denitrificans DSM 20603 8381345 YP_003162128.1 CDS Jden_2188 NC_013174.1 2362413 2363561 D hypothetical protein 2362413..2363561 Jonesia denitrificans DSM 20603 8381346 YP_003162129.1 CDS Jden_2189 NC_013174.1 2363545 2363688 D hypothetical protein 2363545..2363688 Jonesia denitrificans DSM 20603 8381347 YP_003162130.1 CDS Jden_2190 NC_013174.1 2363739 2364338 R hypothetical protein complement(2363739..2364338) Jonesia denitrificans DSM 20603 8381348 YP_003162131.1 CDS Jden_2191 NC_013174.1 2364375 2364710 R hypothetical protein complement(2364375..2364710) Jonesia denitrificans DSM 20603 8381349 YP_003162132.1 CDS Jden_2192 NC_013174.1 2365206 2366762 R PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: hypothetical protein; TAP domain-containing protein complement(2365206..2366762) Jonesia denitrificans DSM 20603 8381817 YP_003162133.1 CDS Jden_2193 NC_013174.1 2366759 2367916 R SMART: AAA ATPase; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(2366759..2367916) Jonesia denitrificans DSM 20603 8381351 YP_003162134.1 CDS Jden_2194 NC_013174.1 2367913 2368578 R KEGG: gur:Gura_3153 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(2367913..2368578) Jonesia denitrificans DSM 20603 8381352 YP_003162135.1 CDS Jden_2195 NC_013174.1 2368633 2369307 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pde:Pden_4839 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 2368633..2369307 Jonesia denitrificans DSM 20603 8381353 YP_003162136.1 CDS Jden_2196 NC_013174.1 2369389 2370438 R PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: xca:xccb100_2335 GFO/IDH/MocA family oxidoreductase; oxidoreductase domain-containing protein complement(2369389..2370438) Jonesia denitrificans DSM 20603 8381354 YP_003162137.1 CDS Jden_2197 NC_013174.1 2370472 2373243 R KEGG: bba:Bd0964 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I complement(2370472..2373243) Jonesia denitrificans DSM 20603 8381355 YP_003162138.1 CDS Jden_2198 NC_013174.1 2373353 2374255 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: bav:BAV1037 membrane-associated phosphatase; PA-phosphatase like phosphoesterase complement(2373353..2374255) Jonesia denitrificans DSM 20603 8381356 YP_003162139.1 CDS Jden_2199 NC_013174.1 2374359 2375477 R PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: aeh:Mlg_1707 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 complement(2374359..2375477) Jonesia denitrificans DSM 20603 8381357 YP_003162140.1 CDS Jden_2200 NC_013174.1 2375474 2376259 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: yen:YE2748 putative uroporphyrin-III C- methyltransferase; uroporphyrin-III C-methyltransferase complement(2375474..2376259) Jonesia denitrificans DSM 20603 8381358 YP_003162141.1 CDS Jden_2201 NC_013174.1 2376256 2378868 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; KEGG: rso:RSp1222 nitrite reductase NADPH large subunit; nitrite reductase (NAD(P)H) large subunit complement(2376256..2378868) Jonesia denitrificans DSM 20603 8381359 YP_003162142.1 CDS Jden_2202 NC_013174.1 2379181 2379555 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: prw:PsycPRwf_1553 nitrite reductase (NAD(P)H), small subunit; Rieske (2Fe-2S) domain-containing protein 2379181..2379555 Jonesia denitrificans DSM 20603 8381360 YP_003162143.1 CDS Jden_2203 NC_013174.1 2379552 2380745 R PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_7270 hypothetical protein; hypothetical protein complement(2379552..2380745) Jonesia denitrificans DSM 20603 8381361 YP_003162144.1 CDS Jden_2204 NC_013174.1 2380786 2382396 R PFAM: methyltransferase small; KEGG: sus:Acid_0229 methyltransferase small; methyltransferase small complement(2380786..2382396) Jonesia denitrificans DSM 20603 8381362 YP_003162145.1 CDS Jden_2205 NC_013174.1 2382398 2383180 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_4045 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(2382398..2383180) Jonesia denitrificans DSM 20603 8381363 YP_003162146.1 CDS Jden_2206 NC_013174.1 2383177 2383875 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3515 ribonucleoside-triphosphate reductase, anaerobic-like; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2383177..2383875) Jonesia denitrificans DSM 20603 8381364 YP_003162147.1 CDS Jden_2207 NC_013174.1 2383872 2385782 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: mmr:Mmar10_0305 anaerobic ribonucleoside triphosphate reductase; anaerobic ribonucleoside-triphosphate reductase complement(2383872..2385782) Jonesia denitrificans DSM 20603 8381365 YP_003162148.1 CDS Jden_2208 NC_013174.1 2386533 2387633 R PFAM: PfkB domain protein; KEGG: scl:sce5155 putative 2-dehydro-3- deoxygluconokinase; PfkB domain-containing protein complement(2386533..2387633) Jonesia denitrificans DSM 20603 8381366 YP_003162149.1 CDS Jden_2209 NC_013174.1 2387630 2388277 R TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: ppr:PBPRB1732 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(2387630..2388277) Jonesia denitrificans DSM 20603 8381367 YP_003162150.1 CDS Jden_2210 NC_013174.1 2388388 2389209 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: azc:AZC_3198 putative transcriptional regulator; transcriptional regulator, IclR family complement(2388388..2389209) Jonesia denitrificans DSM 20603 8381368 YP_003162151.1 CDS Jden_2211 NC_013174.1 2389233 2390477 R TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: aba:Acid345_1701 galactokinase; galactokinase complement(2389233..2390477) Jonesia denitrificans DSM 20603 8381369 YP_003162152.1 CDS Jden_2212 NC_013174.1 2390474 2391745 R KEGG: gbm:Gbem_4017 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase complement(2390474..2391745) Jonesia denitrificans DSM 20603 8381370 YP_003162153.1 CDS Jden_2213 NC_013174.1 2391937 2393208 D PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0002798 probable transcriptional regulator protein, ROK family; ROK family protein 2391937..2393208 Jonesia denitrificans DSM 20603 8381371 YP_003162154.1 CDS Jden_2214 NC_013174.1 2393350 2394648 D PFAM: SCP-like extracellular; KEGG: hypothetical protein; hypothetical protein 2393350..2394648 Jonesia denitrificans DSM 20603 8381372 YP_003162155.1 CDS Jden_2215 NC_013174.1 2394932 2395465 R PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2951 acetyltransferase; N-acetyltransferase GCN5 complement(2394932..2395465) Jonesia denitrificans DSM 20603 8381819 YP_003162156.1 CDS Jden_2216 NC_013174.1 2401561 2401803 R hypothetical protein complement(2401561..2401803) Jonesia denitrificans DSM 20603 8381823 YP_003162157.1 CDS Jden_2217 NC_013174.1 2401803 2403086 R PFAM: phosphate transporter; KEGG: glo:Glov_0587 phosphate transporter; phosphate transporter complement(2401803..2403086) Jonesia denitrificans DSM 20603 8381375 YP_003162158.1 CDS Jden_2218 NC_013174.1 2403234 2405819 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: sfu:Sfum_1698 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2403234..2405819 Jonesia denitrificans DSM 20603 8381376 YP_003162159.1 CDS Jden_2219 NC_013174.1 2405830 2407140 R PFAM: aminotransferase class I and II; KEGG: mpo:Mpop_0649 putative transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2405830..2407140) Jonesia denitrificans DSM 20603 8381377 YP_003162160.1 CDS Jden_2220 NC_013174.1 2407301 2407726 R hypothetical protein complement(2407301..2407726) Jonesia denitrificans DSM 20603 8381378 YP_003162161.1 CDS Jden_2221 NC_013174.1 2407723 2408196 R PFAM: TadE family protein; TadE family protein complement(2407723..2408196) Jonesia denitrificans DSM 20603 8381379 YP_003162162.1 CDS Jden_2222 NC_013174.1 2408202 2408420 R hypothetical protein complement(2408202..2408420) Jonesia denitrificans DSM 20603 8381380 YP_003162163.1 CDS Jden_2223 NC_013174.1 2408568 2409818 R PFAM: type II secretion system protein; KEGG: nar:Saro_1524 type II secretion system protein; type II secretion system protein complement(2408568..2409818) Jonesia denitrificans DSM 20603 8381381 YP_003162164.1 CDS Jden_2224 NC_013174.1 2409809 2410969 R PFAM: type II secretion system protein E; KEGG: csa:Csal_1659 type II secretion system protein E; type II secretion system protein E complement(2409809..2410969) Jonesia denitrificans DSM 20603 8381382 YP_003162165.1 CDS Jden_2225 NC_013174.1 2410966 2411763 R KEGG: vvy:VV1260 Mrp protein; hypothetical protein complement(2410966..2411763) Jonesia denitrificans DSM 20603 8381383 YP_003162166.1 CDS Jden_2226 NC_013174.1 2411952 2412800 D TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: ppf:Pput_3998 HAD family hydrolase; HAD-superfamily hydrolase 2411952..2412800 Jonesia denitrificans DSM 20603 8381384 YP_003162167.1 CDS Jden_2227 NC_013174.1 2413377 2414246 D PFAM: formate/nitrite transporter; KEGG: spe:Spro_4597 nitrite transporter NirC; formate/nitrite transporter 2413377..2414246 Jonesia denitrificans DSM 20603 8381385 YP_003162168.1 CDS Jden_2228 NC_013174.1 2414505 2415716 D PFAM: glycoside hydrolase family 5; Dockerin cellulose-binding family V; KEGG: cja:CJA_3338 endo-1,4-beta-mannanase man5A; glycoside hydrolase family protein 2414505..2415716 Jonesia denitrificans DSM 20603 8381386 YP_003162169.1 CDS Jden_2229 NC_013174.1 2415928 2417334 D PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: sde:Sde_0064 putative secreted beta- mannosidase; glycoside hydrolase family protein 2415928..2417334 Jonesia denitrificans DSM 20603 8381387 YP_003162170.1 CDS Jden_2230 NC_013174.1 2417473 2419515 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: aba:Acid345_3520 acetyl-coenzyme A synthetase; acetate/CoA ligase 2417473..2419515 Jonesia denitrificans DSM 20603 8381388 YP_003162171.1 CDS Jden_2231 NC_013174.1 2419574 2420452 D hypothetical protein 2419574..2420452 Jonesia denitrificans DSM 20603 8381389 YP_003162172.1 CDS Jden_2232 NC_013174.1 2420456 2421379 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1337 MCP-domain-containing signal transduction protein; methyl-accepting chemotaxis sensory transducer complement(2420456..2421379) Jonesia denitrificans DSM 20603 8381390 YP_003162173.1 CDS Jden_2233 NC_013174.1 2421376 2421909 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: pzu:PHZ_c0444 aerotaxis receptor; putative PAS/PAC sensor protein complement(2421376..2421909) Jonesia denitrificans DSM 20603 8381391 YP_003162174.1 CDS Jden_2234 NC_013174.1 2422051 2422995 D TIGRFAM: mycothiol biosynthesis acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: csa:Csal_2525 GCN5-related N- acetyltransferase; mycothiol biosynthesis acetyltransferase 2422051..2422995 Jonesia denitrificans DSM 20603 8381392 YP_003162175.1 CDS Jden_2235 NC_013174.1 2423011 2425311 D PFAM: Polyphosphate kinase; KEGG: mxa:MXAN_0056 polyphosphate kinase; polyphosphate kinase 2423011..2425311 Jonesia denitrificans DSM 20603 8381393 YP_003162176.1 CDS Jden_2236 NC_013174.1 2425315 2426385 D PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; NUDIX hydrolase 2425315..2426385 Jonesia denitrificans DSM 20603 8381394 YP_003162177.1 CDS Jden_2238 NC_013174.1 2427409 2428029 R PFAM: protein of unknown function DUF47; KEGG: aba:Acid345_3130 protein of unknown function DUF47; hypothetical protein complement(2427409..2428029) Jonesia denitrificans DSM 20603 8381824 YP_003162178.1 CDS Jden_2239 NC_013174.1 2428550 2429209 R hypothetical protein complement(2428550..2429209) Jonesia denitrificans DSM 20603 8381396 YP_003162179.1 CDS Jden_2240 NC_013174.1 2429202 2429639 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rme:Rmet_1865 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(2429202..2429639) Jonesia denitrificans DSM 20603 8381397 YP_003162180.1 CDS Jden_2241 NC_013174.1 2429782 2430471 D KEGG: mxa:MXAN_2497 hypothetical protein; hypothetical protein 2429782..2430471 Jonesia denitrificans DSM 20603 8381398 YP_003162181.1 CDS Jden_2242 NC_013174.1 2430652 2431587 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 putative permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 2430652..2431587 Jonesia denitrificans DSM 20603 8381399 YP_003162182.1 CDS Jden_2243 NC_013174.1 2431587 2432510 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_0638 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2431587..2432510 Jonesia denitrificans DSM 20603 8381400 YP_003162183.1 CDS Jden_2244 NC_013174.1 2432620 2433987 D PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1079 glycerol-3-phosphate ABC transporter (glycerol-3-phosphate binding protein); extracellular solute-binding protein 2432620..2433987 Jonesia denitrificans DSM 20603 8381401 YP_003162184.1 CDS Jden_2245 NC_013174.1 2433984 2434826 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bsu:BSU09620 hypothetical protein; Glycerophosphodiester phosphodiesterase 2433984..2434826 Jonesia denitrificans DSM 20603 8381402 YP_003162185.1 CDS Jden_2247 NC_013174.1 2436220 2436498 D hypothetical protein 2436220..2436498 Jonesia denitrificans DSM 20603 8381826 YP_003162186.1 CDS Jden_2248 NC_013174.1 2436676 2438241 D PFAM: N-6 DNA methylase; KEGG: afr:AFE_2793 type I restriction-modification system, M subunit; N-6 DNA methylase 2436676..2438241 Jonesia denitrificans DSM 20603 8381404 YP_003162187.1 CDS Jden_2249 NC_013174.1 2438238 2439392 D PFAM: restriction modification system DNA specificity domain; KEGG: rfr:Rfer_0030 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2438238..2439392 Jonesia denitrificans DSM 20603 8381405 YP_003162188.1 CDS Jden_2250 NC_013174.1 2439389 2440129 D KEGG: bbt:BBta_3620 hypothetical protein; hypothetical protein 2439389..2440129 Jonesia denitrificans DSM 20603 8381406 YP_003162189.1 CDS Jden_2251 NC_013174.1 2440126 2443260 D KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 2440126..2443260 Jonesia denitrificans DSM 20603 8381407 YP_003162190.1 CDS Jden_2252 NC_013174.1 2443260 2443391 D hypothetical protein 2443260..2443391 Jonesia denitrificans DSM 20603 8381408 YP_003162191.1 CDS Jden_2253 NC_013174.1 2443391 2444635 D KEGG: cell division cycle protein 48; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Microtubule-severing ATPase 2443391..2444635 Jonesia denitrificans DSM 20603 8381409 YP_003162192.1 CDS Jden_2254 NC_013174.1 2444625 2446019 D hypothetical protein 2444625..2446019 Jonesia denitrificans DSM 20603 8381410 YP_003162193.1 CDS Jden_2255 NC_013174.1 2446041 2446469 D hypothetical protein 2446041..2446469 Jonesia denitrificans DSM 20603 8381411 YP_003162194.1 CDS Jden_2256 NC_013174.1 2446537 2446923 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase ArsC; K03741 arsenate reductase; protein-tyrosine phosphatase complement(2446537..2446923) Jonesia denitrificans DSM 20603 8381412 YP_003162195.1 CDS Jden_2257 NC_013174.1 2446949 2448037 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bca:BCE_5383 membrane-bound transcriptional regulator LytR; cell envelope-related transcriptional attenuator complement(2446949..2448037) Jonesia denitrificans DSM 20603 8381413 YP_003162196.1 CDS Jden_2258 NC_013174.1 2448302 2449114 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: proline/glycine betaine ABC transporter; ABC transporter 2448302..2449114 Jonesia denitrificans DSM 20603 8381414 YP_003162197.1 CDS Jden_2259 NC_013174.1 2449111 2449773 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: proline/glycine betaine ABC transporter; K05846 osmoprotectant transport system permease protein; binding-protein-dependent transport system inner membrane protein 2449111..2449773 Jonesia denitrificans DSM 20603 8381415 YP_003162198.1 CDS Jden_2260 NC_013174.1 2449751 2450434 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter; K05846 osmoprotectant transport system permease protein; binding-protein-dependent transport system inner membrane protein 2449751..2450434 Jonesia denitrificans DSM 20603 8381416 YP_003162199.1 CDS Jden_2261 NC_013174.1 2450441 2451361 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine); glycine/betaine ABC transporter substrate-binding protein 2450441..2451361 Jonesia denitrificans DSM 20603 8381417 YP_003162200.1 CDS Jden_2262 NC_013174.1 2451530 2452516 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter 2451530..2452516 Jonesia denitrificans DSM 20603 8381418 YP_003162201.1 CDS Jden_2263 NC_013174.1 2452479 2453180 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: scl:sce8455 putative NAD(P)H dehydrogenase; NAD(P)H dehydrogenase (quinone) complement(2452479..2453180) Jonesia denitrificans DSM 20603 8381419 YP_003162202.1 CDS Jden_2264 NC_013174.1 2453177 2453653 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mes:Meso_2463 transcriptional regulator, MarR family; transcriptional regulator, MarR family complement(2453177..2453653) Jonesia denitrificans DSM 20603 8381420 YP_003162203.1 CDS Jden_2265 NC_013174.1 2453864 2455417 D TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: vvy:VVA0812 NAD(P) transhydrogenase subunit alpha; NAD(P) transhydrogenase subunit alpha 2453864..2455417 Jonesia denitrificans DSM 20603 8381421 YP_003162204.1 CDS Jden_2266 NC_013174.1 2455420 2456808 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: hap:HAPS_2212 NAD(P) transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 2455420..2456808 Jonesia denitrificans DSM 20603 8381422 YP_003162205.1 CDS Jden_2267 NC_013174.1 2457042 2457788 D KEGG: low complexity orf similar to C. albicans HYR1 protein; hypothetical protein 2457042..2457788 Jonesia denitrificans DSM 20603 8381423 YP_003162206.1 CDS Jden_2268 NC_013174.1 2457994 2458980 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase complement(2457994..2458980) Jonesia denitrificans DSM 20603 8381424 YP_003162207.1 CDS Jden_2269 NC_013174.1 2459063 2459401 R PFAM: protein of unknown function DUF1025; KEGG: mxa:MXAN_4469 tetratricopeptide repeat protein; hypothetical protein complement(2459063..2459401) Jonesia denitrificans DSM 20603 8381425 YP_003162208.1 CDS Jden_2270 NC_013174.1 2460115 2460480 R PFAM: protein of unknown function DUF955; hypothetical protein complement(2460115..2460480) Jonesia denitrificans DSM 20603 8381830 YP_003162209.1 CDS Jden_2271 NC_013174.1 2460491 2460916 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A2209 putative DNA-binding protein; XRE family transcriptional regulator complement(2460491..2460916) Jonesia denitrificans DSM 20603 8381427 YP_003162210.1 CDS Jden_2272 NC_013174.1 2461048 2461254 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_4110 transcriptional regulator, XRE family with cupin sensor domain; XRE family transcriptional regulator 2461048..2461254 Jonesia denitrificans DSM 20603 8381428 YP_003162211.1 CDS Jden_2273 NC_013174.1 2461339 2461605 D hypothetical protein 2461339..2461605 Jonesia denitrificans DSM 20603 8381429 YP_003162212.1 CDS Jden_2274 NC_013174.1 2461602 2461778 D hypothetical protein 2461602..2461778 Jonesia denitrificans DSM 20603 8381430 YP_003162213.1 CDS Jden_2275 NC_013174.1 2461885 2462655 D PFAM: phage antirepressor protein; KEGG: btr:Btr_0998 hypothetical protein; phage antirepressor protein 2461885..2462655 Jonesia denitrificans DSM 20603 8381431 YP_003162214.1 CDS Jden_2276 NC_013174.1 2462652 2462855 D hypothetical protein 2462652..2462855 Jonesia denitrificans DSM 20603 8381432 YP_003162215.1 CDS Jden_2277 NC_013174.1 2462865 2462960 D hypothetical protein 2462865..2462960 Jonesia denitrificans DSM 20603 8381433 YP_003162216.1 CDS Jden_2278 NC_013174.1 2462957 2463976 D KEGG: hypothetical protein; hypothetical protein 2462957..2463976 Jonesia denitrificans DSM 20603 8381434 YP_003162217.1 CDS Jden_2279 NC_013174.1 2463973 2464107 D hypothetical protein 2463973..2464107 Jonesia denitrificans DSM 20603 8381435 YP_003162218.1 CDS Jden_2280 NC_013174.1 2464202 2464483 D hypothetical protein 2464202..2464483 Jonesia denitrificans DSM 20603 8381436 YP_003162219.1 CDS Jden_2281 NC_013174.1 2464476 2465324 D KEGG: pmr:PMI0468 phage-related exonuclease; hypothetical protein 2464476..2465324 Jonesia denitrificans DSM 20603 8381437 YP_003162220.1 CDS Jden_2282 NC_013174.1 2465317 2465958 D KEGG: pde:Pden_3738 transcriptional regulator, fis family; hypothetical protein 2465317..2465958 Jonesia denitrificans DSM 20603 8381438 YP_003162221.1 CDS Jden_2283 NC_013174.1 2465955 2466167 D hypothetical protein 2465955..2466167 Jonesia denitrificans DSM 20603 8381439 YP_003162222.1 CDS Jden_2284 NC_013174.1 2466142 2466276 D hypothetical protein 2466142..2466276 Jonesia denitrificans DSM 20603 8381440 YP_003162223.1 CDS Jden_2285 NC_013174.1 2466273 2466524 D PFAM: glutaredoxin; KEGG: yen:YE0929 putative glutaredoxin; glutaredoxin 2466273..2466524 Jonesia denitrificans DSM 20603 8381441 YP_003162224.1 CDS Jden_2286 NC_013174.1 2466526 2466939 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvm:DvMF_0813 single-strand binding protein; single-strand binding protein 2466526..2466939 Jonesia denitrificans DSM 20603 8381442 YP_003162225.1 CDS Jden_2287 NC_013174.1 2467057 2467410 D hypothetical protein 2467057..2467410 Jonesia denitrificans DSM 20603 8381443 YP_003162226.1 CDS Jden_2288 NC_013174.1 2467407 2467871 D KEGG: mag:amb2718 hypothetical protein; hypothetical protein 2467407..2467871 Jonesia denitrificans DSM 20603 8381444 YP_003162227.1 CDS Jden_2289 NC_013174.1 2467861 2468256 D PFAM: endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 2467861..2468256 Jonesia denitrificans DSM 20603 8381445 YP_003162228.1 CDS Jden_2290 NC_013174.1 2468375 2468560 D hypothetical protein 2468375..2468560 Jonesia denitrificans DSM 20603 8381446 YP_003162229.1 CDS Jden_2291 NC_013174.1 2468557 2468922 D PFAM: transcription factor WhiB; transcription factor WhiB 2468557..2468922 Jonesia denitrificans DSM 20603 8381447 YP_003162230.1 CDS Jden_2292 NC_013174.1 2468919 2469170 D hypothetical protein 2468919..2469170 Jonesia denitrificans DSM 20603 8381448 YP_003162231.1 CDS Jden_2293 NC_013174.1 2469160 2470116 D KEGG: bcb:BCB4264_A0982 DnaD domain protein; hypothetical protein 2469160..2470116 Jonesia denitrificans DSM 20603 8381449 YP_003162232.1 CDS Jden_2294 NC_013174.1 2470113 2470472 D hypothetical protein 2470113..2470472 Jonesia denitrificans DSM 20603 8381450 YP_003162233.1 CDS Jden_2295 NC_013174.1 2470469 2471752 D PFAM: DnaB domain protein helicase domain protein; KEGG: bba:Bd0038 hypothetical protein; DnaB domain-containing protein helicase domain-containing protein 2470469..2471752 Jonesia denitrificans DSM 20603 8381451 YP_003162234.1 CDS Jden_2296 NC_013174.1 2471749 2471952 D hypothetical protein 2471749..2471952 Jonesia denitrificans DSM 20603 8381452 YP_003162235.1 CDS Jden_2297 NC_013174.1 2472098 2472370 D hypothetical protein 2472098..2472370 Jonesia denitrificans DSM 20603 8381453 YP_003162236.1 CDS Jden_2298 NC_013174.1 2472367 2472648 D hypothetical protein 2472367..2472648 Jonesia denitrificans DSM 20603 8381454 YP_003162237.1 CDS Jden_2299 NC_013174.1 2472645 2473025 D KEGG: oca:OCAR_5534 hypothetical protein; hypothetical protein 2472645..2473025 Jonesia denitrificans DSM 20603 8381455 YP_003162238.1 CDS Jden_2300 NC_013174.1 2473022 2473186 D hypothetical protein 2473022..2473186 Jonesia denitrificans DSM 20603 8381456 YP_003162239.1 CDS Jden_2301 NC_013174.1 2473183 2473386 D hypothetical protein 2473183..2473386 Jonesia denitrificans DSM 20603 8381457 YP_003162240.1 CDS Jden_2302 NC_013174.1 2473438 2473965 D hypothetical protein 2473438..2473965 Jonesia denitrificans DSM 20603 8381458 YP_003162241.1 CDS Jden_2303 NC_013174.1 2473962 2474144 D hypothetical protein 2473962..2474144 Jonesia denitrificans DSM 20603 8381459 YP_003162242.1 CDS Jden_2304 NC_013174.1 2474430 2474747 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pne:Pnec_0889 HNH endonuclease; HNH endonuclease 2474430..2474747 Jonesia denitrificans DSM 20603 8381460 YP_003162243.1 CDS Jden_2305 NC_013174.1 2474905 2475123 D hypothetical protein 2474905..2475123 Jonesia denitrificans DSM 20603 8381461 YP_003162244.1 CDS Jden_2306 NC_013174.1 2475125 2476549 D hypothetical protein 2475125..2476549 Jonesia denitrificans DSM 20603 8381462 YP_003162245.1 CDS Jden_2307 NC_013174.1 2476546 2477967 D PFAM: protein of unknown function DUF1483; hypothetical protein 2476546..2477967 Jonesia denitrificans DSM 20603 8381463 YP_003162246.1 CDS Jden_2308 NC_013174.1 2477951 2478700 D hypothetical protein 2477951..2478700 Jonesia denitrificans DSM 20603 8381464 YP_003162247.1 CDS Jden_2309 NC_013174.1 2478796 2479230 D KEGG: YALI0E14487p; hypothetical protein 2478796..2479230 Jonesia denitrificans DSM 20603 8381465 YP_003162248.1 CDS Jden_2310 NC_013174.1 2479242 2480141 D hypothetical protein 2479242..2480141 Jonesia denitrificans DSM 20603 8381466 YP_003162249.1 CDS Jden_2311 NC_013174.1 2480141 2480320 D hypothetical protein 2480141..2480320 Jonesia denitrificans DSM 20603 8381467 YP_003162250.1 CDS Jden_2312 NC_013174.1 2480334 2480741 D hypothetical protein 2480334..2480741 Jonesia denitrificans DSM 20603 8381468 YP_003162251.1 CDS Jden_2313 NC_013174.1 2480743 2481078 D hypothetical protein 2480743..2481078 Jonesia denitrificans DSM 20603 8381469 YP_003162252.1 CDS Jden_2314 NC_013174.1 2481071 2481346 D hypothetical protein 2481071..2481346 Jonesia denitrificans DSM 20603 8381470 YP_003162253.1 CDS Jden_2315 NC_013174.1 2481339 2481686 D hypothetical protein 2481339..2481686 Jonesia denitrificans DSM 20603 8381471 YP_003162254.1 CDS Jden_2316 NC_013174.1 2481748 2482305 D hypothetical protein 2481748..2482305 Jonesia denitrificans DSM 20603 8381472 YP_003162255.1 CDS Jden_2317 NC_013174.1 2482410 2482691 D hypothetical protein 2482410..2482691 Jonesia denitrificans DSM 20603 8381473 YP_003162256.1 CDS Jden_2318 NC_013174.1 2482796 2483080 D hypothetical protein 2482796..2483080 Jonesia denitrificans DSM 20603 8381474 YP_003162257.1 CDS Jden_2319 NC_013174.1 2483134 2483610 R KEGG: GK17254 gene product from transcript GK17254- RA; hypothetical protein complement(2483134..2483610) Jonesia denitrificans DSM 20603 8381475 YP_003162258.1 CDS Jden_2320 NC_013174.1 2483652 2486030 D TIGRFAM: phage tape measure protein; KEGG: bha:BH3518 hypothetical protein; phage tape measure protein 2483652..2486030 Jonesia denitrificans DSM 20603 8381476 YP_003162259.1 CDS Jden_2321 NC_013174.1 2486048 2488153 D PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: similar to titin isoform N2-A; fibronectin type III domain-containing protein 2486048..2488153 Jonesia denitrificans DSM 20603 8381477 YP_003162260.1 CDS Jden_2322 NC_013174.1 2488158 2490806 D KEGG: rpd:RPD_1920 twin-arginine translocation pathway signal; hypothetical protein 2488158..2490806 Jonesia denitrificans DSM 20603 8381478 YP_003162261.1 CDS Jden_2323 NC_013174.1 2490849 2491652 D hypothetical protein 2490849..2491652 Jonesia denitrificans DSM 20603 8381479 YP_003162262.1 CDS Jden_2324 NC_013174.1 2491645 2492685 D hypothetical protein 2491645..2492685 Jonesia denitrificans DSM 20603 8381480 YP_003162263.1 CDS Jden_2325 NC_013174.1 2492686 2493294 D hypothetical protein 2492686..2493294 Jonesia denitrificans DSM 20603 8381481 YP_003162264.1 CDS Jden_2326 NC_013174.1 2493317 2493703 D KEGG: hypothetical protein; hypothetical protein 2493317..2493703 Jonesia denitrificans DSM 20603 8381482 YP_003162265.1 CDS Jden_2327 NC_013174.1 2493700 2493984 D hypothetical protein 2493700..2493984 Jonesia denitrificans DSM 20603 8381483 YP_003162266.1 CDS Jden_2328 NC_013174.1 2494034 2494867 D KEGG: nwi:Nwi_1540 hypothetical protein; hypothetical protein 2494034..2494867 Jonesia denitrificans DSM 20603 8381484 YP_003162267.1 CDS Jden_2329 NC_013174.1 2494879 2495094 D hypothetical protein 2494879..2495094 Jonesia denitrificans DSM 20603 8381485 YP_003162268.1 CDS Jden_2330 NC_013174.1 2495081 2495317 D hypothetical protein 2495081..2495317 Jonesia denitrificans DSM 20603 8381486 YP_003162269.1 CDS Jden_2331 NC_013174.1 2495304 2496452 D hypothetical protein 2495304..2496452 Jonesia denitrificans DSM 20603 8381487 YP_003162270.1 CDS Jden_2332 NC_013174.1 2496622 2497029 R hypothetical protein complement(2496622..2497029) Jonesia denitrificans DSM 20603 8381488 YP_003162271.1 CDS Jden_2333 NC_013174.1 2497085 2497330 R hypothetical protein complement(2497085..2497330) Jonesia denitrificans DSM 20603 8381489 YP_003162272.1 CDS Jden_2334 NC_013174.1 2497496 2498830 R PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; integrase family protein complement(2497496..2498830) Jonesia denitrificans DSM 20603 8381490 YP_003162273.1 CDS Jden_2335 NC_013174.1 2498867 2499130 D hypothetical protein 2498867..2499130 Jonesia denitrificans DSM 20603 8381491 YP_003162274.1 CDS Jden_2337 NC_013174.1 2499825 2500157 D hypothetical protein 2499825..2500157 Jonesia denitrificans DSM 20603 8381831 YP_003162275.1 CDS Jden_2338 NC_013174.1 2500246 2500485 D PFAM: Heavy metal transport/detoxification protein; KEGG: oca:OCAR_4883 hypothetical protein; heavy metal transport/detoxification protein 2500246..2500485 Jonesia denitrificans DSM 20603 8381493 YP_003162276.1 CDS Jden_2339 NC_013174.1 2500692 2502623 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pde:Pden_3295 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 2500692..2502623 Jonesia denitrificans DSM 20603 8381494 YP_003162277.1 CDS Jden_2340 NC_013174.1 2503047 2503520 D PFAM: protein of unknown function DUF1469; KEGG: rce:RC1_0497 hypothetical protein; hypothetical protein 2503047..2503520 Jonesia denitrificans DSM 20603 8381495 YP_003162278.1 CDS Jden_2341 NC_013174.1 2503517 2503786 D hypothetical protein 2503517..2503786 Jonesia denitrificans DSM 20603 8381496 YP_003162279.1 CDS Jden_2342 NC_013174.1 2503836 2504264 D KEGG: AEL327Wp; hypothetical protein 2503836..2504264 Jonesia denitrificans DSM 20603 8381497 YP_003162280.1 CDS Jden_2343 NC_013174.1 2504299 2505708 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase; histidine kinase 2504299..2505708 Jonesia denitrificans DSM 20603 8381498 YP_003162281.1 CDS Jden_2344 NC_013174.1 2505705 2506388 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gme:Gmet_3383 two component transcriptional regulator; two component transcriptional regulator, winged helix family 2505705..2506388 Jonesia denitrificans DSM 20603 8381499 YP_003162282.1 CDS Jden_2345 NC_013174.1 2506499 2506978 D PFAM: protein of unknown function DUF107; hypothetical protein 2506499..2506978 Jonesia denitrificans DSM 20603 8381500 YP_003162283.1 CDS Jden_2346 NC_013174.1 2507082 2508530 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: hypothetical protein; hypothetical protein 2507082..2508530 Jonesia denitrificans DSM 20603 8381501 YP_003162284.1 CDS Jden_2347 NC_013174.1 2508837 2509055 D hypothetical protein 2508837..2509055 Jonesia denitrificans DSM 20603 8381502 YP_003162285.1 CDS Jden_2348 NC_013174.1 2509245 2510504 R PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein; aminoglycoside phosphotransferase complement(2509245..2510504) Jonesia denitrificans DSM 20603 8381503 YP_003162286.1 CDS Jden_2349 NC_013174.1 2510692 2510931 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cps:CPS_1619 DNA-binding response regulator; DNA binding domain-containing protein complement(2510692..2510931) Jonesia denitrificans DSM 20603 8381504 YP_003162287.1 CDS Jden_2350 NC_013174.1 2511250 2511444 D hypothetical protein 2511250..2511444 Jonesia denitrificans DSM 20603 8381505 YP_003162288.1 CDS Jden_2351 NC_013174.1 2511747 2512856 R KEGG: mfa:Mfla_0205 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase complement(2511747..2512856) Jonesia denitrificans DSM 20603 8381506 YP_003162289.1 CDS Jden_2352 NC_013174.1 2512874 2514415 R TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: acp:A2cp1_4361 amidophosphoribosyltransferase; amidophosphoribosyltransferase complement(2512874..2514415) Jonesia denitrificans DSM 20603 8381507 YP_003162290.1 CDS Jden_2353 NC_013174.1 2514464 2514802 R hypothetical protein complement(2514464..2514802) Jonesia denitrificans DSM 20603 8381508 YP_003162291.1 CDS Jden_2354 NC_013174.1 2514980 2516014 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0326 periplasmic sulfate binding protein; sulfate ABC transporter substrate-binding protein 2514980..2516014 Jonesia denitrificans DSM 20603 8381509 YP_003162292.1 CDS Jden_2355 NC_013174.1 2516011 2516796 D TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpi:Rpic_1221 sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit CysT 2516011..2516796 Jonesia denitrificans DSM 20603 8381510 YP_003162293.1 CDS Jden_2356 NC_013174.1 2516789 2517619 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A3402 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 2516789..2517619 Jonesia denitrificans DSM 20603 8381511 YP_003162294.1 CDS Jden_2357 NC_013174.1 2517616 2518647 D KEGG: dar:Daro_3690 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 2517616..2518647 Jonesia denitrificans DSM 20603 8381512 YP_003162295.1 CDS Jden_2358 NC_013174.1 2518659 2519045 R hypothetical protein complement(2518659..2519045) Jonesia denitrificans DSM 20603 8381513 YP_003162296.1 CDS Jden_2359 NC_013174.1 2519217 2520551 R PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: swi:Swit_0418 glutamate dehydrogenase; glutamate dehydrogenase complement(2519217..2520551) Jonesia denitrificans DSM 20603 8381514 YP_003162297.1 CDS Jden_2360 NC_013174.1 2520843 2522366 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce3488 nitrite reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2520843..2522366) Jonesia denitrificans DSM 20603 8381515 YP_003162298.1 CDS Jden_2361 NC_013174.1 2522363 2524561 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: msl:Msil_3772 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(2522363..2524561) Jonesia denitrificans DSM 20603 8381516 YP_003162299.1 CDS Jden_2362 NC_013174.1 2524571 2525947 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein; major facilitator superfamily protein complement(2524571..2525947) Jonesia denitrificans DSM 20603 8381517 YP_003162300.1 CDS Jden_2363 NC_013174.1 2526099 2527277 R PFAM: FAD dependent oxidoreductase; KEGG: met:M446_4751 sarcosine oxidase; sarcosine oxidase complement(2526099..2527277) Jonesia denitrificans DSM 20603 8381518 YP_003162301.1 CDS Jden_2364 NC_013174.1 2527289 2529613 R KEGG: afw:Anae109_4362 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase II complement(2527289..2529613) Jonesia denitrificans DSM 20603 8381519 YP_003162302.1 CDS Jden_2365 NC_013174.1 2529780 2530595 D KEGG: hypothetical protein; hypothetical protein 2529780..2530595 Jonesia denitrificans DSM 20603 8381520 YP_003162303.1 CDS Jden_2366 NC_013174.1 2530718 2531674 D PFAM: periplasmic binding protein; KEGG: oan:Oant_3797 periplasmic binding protein; periplasmic binding protein 2530718..2531674 Jonesia denitrificans DSM 20603 8381521 YP_003162304.1 CDS Jden_2367 NC_013174.1 2531710 2532750 D PFAM: transport system permease protein; KEGG: atc:AGR_C_4489 ferrichrome ABC transporter (permease); transport system permease 2531710..2532750 Jonesia denitrificans DSM 20603 8381522 YP_003162305.1 CDS Jden_2368 NC_013174.1 2532804 2533811 D PFAM: transport system permease protein; KEGG: oan:Oant_3799 transport system permease protein; transport system permease 2532804..2533811 Jonesia denitrificans DSM 20603 8381523 YP_003162306.1 CDS Jden_2369 NC_013174.1 2533808 2534566 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmt:BSUIS_B0663 hypothetical protein; ABC transporter 2533808..2534566 Jonesia denitrificans DSM 20603 8381524 YP_003162307.1 CDS Jden_2370 NC_013174.1 2534594 2535661 R PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: abu:Abu_1147 putative efflux protein; hypothetical protein complement(2534594..2535661) Jonesia denitrificans DSM 20603 8381525 YP_003162308.1 CDS Jden_2371 NC_013174.1 2535658 2537130 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: shl:Shal_2699 hypothetical protein; hypothetical protein complement(2535658..2537130) Jonesia denitrificans DSM 20603 8381526 YP_003162309.1 CDS Jden_2372 NC_013174.1 2537178 2537336 D hypothetical protein 2537178..2537336 Jonesia denitrificans DSM 20603 8381527 YP_003162310.1 CDS Jden_2373 NC_013174.1 2537436 2538320 D hypothetical protein 2537436..2538320 Jonesia denitrificans DSM 20603 8381528 YP_003162311.1 CDS Jden_2374 NC_013174.1 2538317 2539237 D hypothetical protein 2538317..2539237 Jonesia denitrificans DSM 20603 8381529 YP_003162312.1 CDS Jden_2375 NC_013174.1 2539254 2539679 R PFAM: DoxX family protein; KEGG: bba:Bd2812 hypothetical protein; DoxX family protein complement(2539254..2539679) Jonesia denitrificans DSM 20603 8381530 YP_003162313.1 CDS Jden_2376 NC_013174.1 2539782 2541854 R PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6432 putative acyl-CoA dehydrogenase; acyl-CoA oxidase domain-containing protein complement(2539782..2541854) Jonesia denitrificans DSM 20603 8381531 YP_003162314.1 CDS Jden_2377 NC_013174.1 2541920 2542555 R PFAM: regulatory protein TetR; KEGG: ent:Ent638_2692 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2541920..2542555) Jonesia denitrificans DSM 20603 8381532 YP_003162315.1 CDS Jden_2378 NC_013174.1 2542624 2543940 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: pmy:Pmen_0745 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 2542624..2543940 Jonesia denitrificans DSM 20603 8381533 YP_003162316.1 CDS Jden_2379 NC_013174.1 2543998 2545416 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_0416 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2543998..2545416 Jonesia denitrificans DSM 20603 8381534 YP_003162317.1 CDS Jden_2380 NC_013174.1 2545413 2546366 D PFAM: MaoC domain protein dehydratase; KEGG: pmy:Pmen_0742 dehydratase; MaoC domain-containing protein dehydratase 2545413..2546366 Jonesia denitrificans DSM 20603 8381535 YP_003162318.1 CDS Jden_2381 NC_013174.1 2546675 2546830 R hypothetical protein complement(2546675..2546830) Jonesia denitrificans DSM 20603 8381536 YP_003162319.1 CDS Jden_2382 NC_013174.1 2547257 2547694 D hypothetical protein 2547257..2547694 Jonesia denitrificans DSM 20603 8381537 YP_003162320.1 CDS Jden_2383 NC_013174.1 2547807 2549093 R KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; PFAM: glycoside hydrolase family 11; cellulose- binding family II; SMART: cellulose-binding family II; endo-1,4-beta-xylanase complement(2547807..2549093) Jonesia denitrificans DSM 20603 8381538 YP_003162321.1 CDS Jden_2384 NC_013174.1 2549446 2550582 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: oan:Oant_2127 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2549446..2550582) Jonesia denitrificans DSM 20603 8381539 YP_003162322.1 CDS Jden_2385 NC_013174.1 2550782 2551393 R KEGG: mxa:MXAN_1062 acetyltransferase, GNAT family; acetyltransferase, GNAT family complement(2550782..2551393) Jonesia denitrificans DSM 20603 8381540 YP_003162323.1 CDS Jden_2386 NC_013174.1 2551665 2552264 D KEGG: hypothetical protein LOC754593; hypothetical protein 2551665..2552264 Jonesia denitrificans DSM 20603 8381541 YP_003162324.1 CDS Jden_2387 NC_013174.1 2552285 2553103 D KEGG: predicted protein; hypothetical protein 2552285..2553103 Jonesia denitrificans DSM 20603 8381542 YP_003162325.1 CDS Jden_2389 NC_013174.1 2553359 2554255 R PFAM: alpha/beta hydrolase fold protein; KEGG: sme:SMa1166 putative hydrolase protein; alpha/beta hydrolase fold protein complement(2553359..2554255) Jonesia denitrificans DSM 20603 8381832 YP_003162326.1 CDS Jden_2390 NC_013174.1 2554444 2555592 R TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: sbo:SBO_0793 23S rRNA metyluridine methyltransferase; 23S rRNA (uracil-5-)-methyltransferase RumB complement(2554444..2555592) Jonesia denitrificans DSM 20603 8381544 YP_003162327.1 CDS Jden_2391 NC_013174.1 2555737 2557173 R PFAM: aminotransferase class V; KEGG: scl:sce1210 hypothetical protein; cysteine desulfurase complement(2555737..2557173) Jonesia denitrificans DSM 20603 8381545 YP_003162328.1 CDS Jden_2392 NC_013174.1 2557624 2558049 D SMART: Rhodanese domain protein; KEGG: pla:Plav_0002 rhodanese domain-containing protein; rhodanese domain-containing protein 2557624..2558049 Jonesia denitrificans DSM 20603 8381546 YP_003162329.1 CDS Jden_2393 NC_013174.1 2558054 2559268 D KEGG: gox:GOX1671 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-succinylhomoserine sulfhydrylase 2558054..2559268 Jonesia denitrificans DSM 20603 8381547 YP_003162330.1 CDS Jden_2394 NC_013174.1 2559337 2561388 D PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: bha:BH1061 alpha-glucuronidase; alpha-glucuronidase 2559337..2561388 Jonesia denitrificans DSM 20603 8381548 YP_003162331.1 CDS Jden_2395 NC_013174.1 2561429 2562187 D KEGG: bcb:BCB4264_A3163 hypothetical protein; hypothetical protein 2561429..2562187 Jonesia denitrificans DSM 20603 8381549 YP_003162332.1 CDS Jden_2396 NC_013174.1 2562177 2562851 R hypothetical protein complement(2562177..2562851) Jonesia denitrificans DSM 20603 8381550 YP_003162333.1 CDS Jden_2397 NC_013174.1 2562851 2564923 R PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase complement(2562851..2564923) Jonesia denitrificans DSM 20603 8381551 YP_003162334.1 CDS Jden_2398 NC_013174.1 2564979 2566538 R PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase; xylan 1,4-beta-xylosidase complement(2564979..2566538) Jonesia denitrificans DSM 20603 8381552 YP_003162335.1 CDS Jden_2399 NC_013174.1 2566618 2568279 R PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein; extracellular solute-binding protein complement(2566618..2568279) Jonesia denitrificans DSM 20603 8381553 YP_003162336.1 CDS Jden_2400 NC_013174.1 2568358 2569299 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase); binding-protein-dependent transport system inner membrane protein complement(2568358..2569299) Jonesia denitrificans DSM 20603 8381554 YP_003162337.1 CDS Jden_2401 NC_013174.1 2569293 2570315 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07110 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein complement(2569293..2570315) Jonesia denitrificans DSM 20603 8381555 YP_003162338.1 CDS Jden_2403 NC_013174.1 2571733 2572662 D PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase; Acetyl xylan esterase 2571733..2572662 Jonesia denitrificans DSM 20603 8381833 YP_003162339.1 CDS Jden_2404 NC_013174.1 2572669 2573718 D KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 2572669..2573718 Jonesia denitrificans DSM 20603 8381557 YP_003162340.1 CDS Jden_2405 NC_013174.1 2573824 2575218 D PFAM: Glucuronate isomerase; KEGG: mmr:Mmar10_0230 glucuronate isomerase; glucuronate isomerase 2573824..2575218 Jonesia denitrificans DSM 20603 8381558 YP_003162341.1 CDS Jden_2406 NC_013174.1 2575215 2576663 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sde:Sde_0941 putative D-mannonate oxidoreductase protein; mannitol dehydrogenase domain-containing protein 2575215..2576663 Jonesia denitrificans DSM 20603 8381559 YP_003162342.1 CDS Jden_2407 NC_013174.1 2576791 2578020 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ecr:ECIAI1_1631 putative enolase/dehydratase; mandelate racemase/muconate-lactonizing protein 2576791..2578020 Jonesia denitrificans DSM 20603 8381560 YP_003162343.1 CDS Jden_2408 NC_013174.1 2578150 2578680 D KEGG: pde:Pden_2932 carbohydrate kinase, thermoresistant glucokinase family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 2578150..2578680 Jonesia denitrificans DSM 20603 8381561 YP_003162344.1 CDS Jden_2409 NC_013174.1 2584420 2584902 R PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_3193 IAA acetyltransferase; N-acetyltransferase GCN5 complement(2584420..2584902) Jonesia denitrificans DSM 20603 8381837 YP_003162345.1 CDS Jden_2410 NC_013174.1 2585205 2585921 R KEGG: bha:BH0628 phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I complement(2585205..2585921) Jonesia denitrificans DSM 20603 8381563 YP_003162346.1 CDS Jden_2411 NC_013174.1 2585921 2586181 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; KEGG: nwi:Nwi_1305 phosphoribosylformylglycinamidine synthase subunit PurS; phosphoribosylformylglycinamidine synthase PurS complement(2585921..2586181) Jonesia denitrificans DSM 20603 8381564 YP_003162347.1 CDS Jden_2412 NC_013174.1 2586287 2587249 R KEGG: rpd:RPD_0150 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2586287..2587249) Jonesia denitrificans DSM 20603 8381565 YP_003162348.1 CDS Jden_2413 NC_013174.1 2587246 2588556 R KEGG: gbe:GbCGDNIH1_2297 phosphoribosylamine-- glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine/glycine ligase complement(2587246..2588556) Jonesia denitrificans DSM 20603 8381566 YP_003162349.1 CDS Jden_2414 NC_013174.1 2588891 2589856 D PFAM: fatty acid desaturase; KEGG: cak:Caul_2941 fatty acid desaturase; fatty acid desaturase 2588891..2589856 Jonesia denitrificans DSM 20603 8381567 YP_003162350.1 CDS Jden_2415 NC_013174.1 2589944 2590984 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: lch:Lcho_3227 LacI family transcription regulator; transcriptional regulator, LacI family 2589944..2590984 Jonesia denitrificans DSM 20603 8381568 YP_003162351.1 CDS Jden_2416 NC_013174.1 2590959 2592245 R KEGG: sfu:Sfum_1271 adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase complement(2590959..2592245) Jonesia denitrificans DSM 20603 8381569 YP_003162352.1 CDS Jden_2417 NC_013174.1 2592488 2592823 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb1117 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist 2592488..2592823 Jonesia denitrificans DSM 20603 8381570 YP_003162353.1 CDS Jden_2418 NC_013174.1 2592847 2595087 R PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: glo:Glov_2100 putative phytochrome sensor protein; protein serine/threonine phosphatase complement(2592847..2595087) Jonesia denitrificans DSM 20603 8381571 YP_003162354.1 CDS Jden_2419 NC_013174.1 2595221 2595601 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 2595221..2595601 Jonesia denitrificans DSM 20603 8381572 YP_003162355.1 CDS Jden_2420 NC_013174.1 2595708 2596730 R KEGG: sfu:Sfum_1469 fructose-bisphosphate aldolase, class II; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase complement(2595708..2596730) Jonesia denitrificans DSM 20603 8381573 YP_003162356.1 CDS Jden_2421 NC_013174.1 2596870 2597331 R hypothetical protein complement(2596870..2597331) Jonesia denitrificans DSM 20603 8381574 YP_003162357.1 CDS Jden_2422 NC_013174.1 2597376 2597501 R hypothetical protein complement(2597376..2597501) Jonesia denitrificans DSM 20603 8381575 YP_003162358.1 CDS Jden_2423 NC_013174.1 2597605 2598369 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hypothetical protein; tRNA/rRNA methyltransferase SpoU complement(2597605..2598369) Jonesia denitrificans DSM 20603 8381576 YP_003162359.1 CDS Jden_2424 NC_013174.1 2598496 2599269 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_0794 HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily hydrolase 2598496..2599269 Jonesia denitrificans DSM 20603 8381577 YP_003162360.1 CDS Jden_2425 NC_013174.1 2599402 2599977 R KEGG: pca:Pcar_1325 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase complement(2599402..2599977) Jonesia denitrificans DSM 20603 8381578 YP_003162361.1 CDS Jden_2426 NC_013174.1 2599997 2600806 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1100 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2599997..2600806) Jonesia denitrificans DSM 20603 8381579 YP_003162362.1 CDS Jden_2427 NC_013174.1 2600816 2601442 R hypothetical protein complement(2600816..2601442) Jonesia denitrificans DSM 20603 8381580 YP_003162363.1 CDS Jden_2428 NC_013174.1 2601491 2602285 D TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mxa:MXAN_5178 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 2601491..2602285 Jonesia denitrificans DSM 20603 8381581 YP_003162364.1 CDS Jden_2429 NC_013174.1 2602650 2603486 D PFAM: NLP/P60 protein; KEGG: sfv:SFV_1677 putative lipoprotein; NLP/P60 protein 2602650..2603486 Jonesia denitrificans DSM 20603 8381582 YP_003162365.1 CDS Jden_2430 NC_013174.1 2603473 2604096 R PFAM: regulatory protein TetR; KEGG: transcriptional regulator; TetR family transcriptional regulator complement(2603473..2604096) Jonesia denitrificans DSM 20603 8381583 YP_003162366.1 CDS Jden_2431 NC_013174.1 2604188 2606785 R KEGG: rce:RC1_2633 ATP-dependent chaperone protein ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(2604188..2606785) Jonesia denitrificans DSM 20603 8381584 YP_003162367.1 CDS Jden_2432 NC_013174.1 2607026 2607967 D KEGG: hypothetical protein; hypothetical protein 2607026..2607967 Jonesia denitrificans DSM 20603 8381585 YP_003162368.1 CDS Jden_2433 NC_013174.1 2607964 2608971 D PFAM: alpha/beta hydrolase fold protein; KEGG: aci:ACIAD2016 hypothetical protein; alpha/beta hydrolase fold protein 2607964..2608971 Jonesia denitrificans DSM 20603 8381586 YP_003162369.1 CDS Jden_2434 NC_013174.1 2608987 2609394 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: gsu:GSU2338 putative monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter subunit MnhG/PhaG complement(2608987..2609394) Jonesia denitrificans DSM 20603 8381587 YP_003162370.1 CDS Jden_2435 NC_013174.1 2609391 2609747 R PFAM: multiple resistance and pH regulation protein F; KEGG: sme:SMc00056 putative monovalent cation/H+ antiporter subunit F; multiple resistance and pH regulation protein F complement(2609391..2609747) Jonesia denitrificans DSM 20603 8381588 YP_003162371.1 CDS Jden_2436 NC_013174.1 2609744 2610352 R KEGG: hha:Hhal_2031 cation antiporter; multisubunit Na+/H+ antiporter MnhE subunit-like protein complement(2609744..2610352) Jonesia denitrificans DSM 20603 8381589 YP_003162372.1 CDS Jden_2437 NC_013174.1 2610349 2611941 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tgr:Tgr7_2525 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(2610349..2611941) Jonesia denitrificans DSM 20603 8381590 YP_003162373.1 CDS Jden_2438 NC_013174.1 2611938 2612417 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: bha:BH1317 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L complement(2611938..2612417) Jonesia denitrificans DSM 20603 8381591 YP_003162374.1 CDS Jden_2439 NC_013174.1 2612414 2615425 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: ilo:IL1907 putative monovalent cation/H+ antiporter subunit A; NADH dehydrogenase (quinone) complement(2612414..2615425) Jonesia denitrificans DSM 20603 8381592 YP_003162375.1 CDS Jden_2440 NC_013174.1 2615534 2616688 R hypothetical protein complement(2615534..2616688) Jonesia denitrificans DSM 20603 8381593 YP_003162376.1 CDS Jden_2441 NC_013174.1 2616706 2617290 R TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: amc:MADE_01987 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(2616706..2617290) Jonesia denitrificans DSM 20603 8381594 YP_003162377.1 CDS Jden_2442 NC_013174.1 2617733 2618251 D KEGG: tdn:Suden_0151 CDP-alcohol phosphatidyltransferase; hypothetical protein 2617733..2618251 Jonesia denitrificans DSM 20603 8381838 YP_003162378.1 CDS Jden_2443 NC_013174.1 2618581 2619465 R hypothetical protein complement(2618581..2619465) Jonesia denitrificans DSM 20603 8381596 YP_003162379.1 CDS Jden_2444 NC_013174.1 2619626 2620261 D PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 2619626..2620261 Jonesia denitrificans DSM 20603 8381597 YP_003162380.1 CDS Jden_2445 NC_013174.1 2620262 2620960 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr5147 hypothetical protein; haloacid dehalogenase domain-containing protein hydrolase complement(2620262..2620960) Jonesia denitrificans DSM 20603 8381598 YP_003162381.1 CDS Jden_2446 NC_013174.1 2621013 2622899 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: haloacid dehalogenase-like hydrolase family protein; alkyl hydroperoxide reductase complement(2621013..2622899) Jonesia denitrificans DSM 20603 8381599 YP_003162382.1 CDS Jden_2447 NC_013174.1 2623099 2624268 D PFAM: chitin-binding domain 3 protein; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: cvi:CV_0554 carbohydrate-binding protein; chitin-binding protein 2623099..2624268 Jonesia denitrificans DSM 20603 8381600 YP_003162383.1 CDS Jden_2448 NC_013174.1 2624365 2626428 R PFAM: copper resistance D domain protein; KEGG: bha:BH0892 hypothetical protein; copper resistance D domain-containing protein complement(2624365..2626428) Jonesia denitrificans DSM 20603 8381601 YP_003162384.1 CDS Jden_2449 NC_013174.1 2626507 2627556 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bba:Bd2797 putative Mg chelatase; ATPase 2626507..2627556 Jonesia denitrificans DSM 20603 8381602 YP_003162385.1 CDS Jden_2450 NC_013174.1 2627575 2628471 D KEGG: gbm:Gbem_1809 protein of unknown function DUF58; hypothetical protein 2627575..2628471 Jonesia denitrificans DSM 20603 8381603 YP_003162386.1 CDS Jden_2451 NC_013174.1 2628607 2629761 D PFAM: SCP-like extracellular; KEGG: GA22995 gene product from transcript GA22995- RA; hypothetical protein 2628607..2629761 Jonesia denitrificans DSM 20603 8381604 YP_003162387.1 CDS Jden_2452 NC_013174.1 2629886 2630392 D hypothetical protein 2629886..2630392 Jonesia denitrificans DSM 20603 8381605 YP_003162388.1 CDS Jden_2453 NC_013174.1 2630389 2631438 D PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pha:PSHAa0962 von Willebrand factor type A; von Willebrand factor type A 2630389..2631438 Jonesia denitrificans DSM 20603 8381606 YP_003162389.1 CDS Jden_2454 NC_013174.1 2631435 2632433 D PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dal:Dalk_3471 von Willebrand factor type A; von Willebrand factor type A 2631435..2632433 Jonesia denitrificans DSM 20603 8381607 YP_003162390.1 CDS Jden_2455 NC_013174.1 2632436 2633482 D KEGG: hypothetical protein; hypothetical protein 2632436..2633482 Jonesia denitrificans DSM 20603 8381608 YP_003162391.1 CDS Jden_2456 NC_013174.1 2633455 2637198 R KEGG: bbr:BB2829 hypothetical protein; hypothetical protein complement(2633455..2637198) Jonesia denitrificans DSM 20603 8381609 YP_003162392.1 CDS Jden_2457 NC_013174.1 2637439 2638263 D KEGG: dsh:Dshi_3407 putative suppressor for copper- sensitivity B precursor; hypothetical protein 2637439..2638263 Jonesia denitrificans DSM 20603 8381610 YP_003162393.1 CDS Jden_2458 NC_013174.1 2638260 2639072 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO1511 efflux ABC transporter, ATP- binding protein; ABC transporter 2638260..2639072 Jonesia denitrificans DSM 20603 8381611 YP_003162394.1 CDS Jden_2459 NC_013174.1 2639023 2639340 R hypothetical protein complement(2639023..2639340) Jonesia denitrificans DSM 20603 8381612 YP_003162395.1 CDS Jden_2460 NC_013174.1 2639470 2640096 D KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein 2639470..2640096 Jonesia denitrificans DSM 20603 8381613 YP_003162396.1 CDS Jden_2461 NC_013174.1 2640191 2641531 D PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: hypothetical protein; FAD linked oxidase domain-containing protein 2640191..2641531 Jonesia denitrificans DSM 20603 8381614 YP_003162397.1 CDS Jden_2462 NC_013174.1 2641580 2644408 R KEGG: mxa:MXAN_1392 hypothetical protein; hypothetical protein complement(2641580..2644408) Jonesia denitrificans DSM 20603 8381615 YP_003162398.1 CDS Jden_2463 NC_013174.1 2644410 2646275 R KEGG: mxa:MXAN_1393 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein complement(2644410..2646275) Jonesia denitrificans DSM 20603 8381616 YP_003162399.1 CDS Jden_2464 NC_013174.1 2646427 2646816 D PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcz:pE33L466_0439 transcriptional regulator; ArsR family transcriptional regulator 2646427..2646816 Jonesia denitrificans DSM 20603 8381617 YP_003162400.1 CDS Jden_2465 NC_013174.1 2646813 2648453 D PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: net:Neut_0352 sulphate transporter; sulfate transporter 2646813..2648453 Jonesia denitrificans DSM 20603 8381618 YP_003162401.1 CDS Jden_2466 NC_013174.1 2648541 2650091 R PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: ank:AnaeK_2035 catalytic domain of components of various dehydrogenase complexes; catalytic domain of components of various dehydrogenase complexes complement(2648541..2650091) Jonesia denitrificans DSM 20603 8381619 YP_003162402.1 CDS Jden_2467 NC_013174.1 2650136 2651164 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: ade:Adeh_1826 branched-chain alpha-keto acid dehydrogenase E1 component; transketolase complement(2650136..2651164) Jonesia denitrificans DSM 20603 8381620 YP_003162403.1 CDS Jden_2468 NC_013174.1 2651161 2652342 R KEGG: gme:Gmet_2509 dehydrogenase, E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(2651161..2652342) Jonesia denitrificans DSM 20603 8381621 YP_003162404.1 CDS Jden_2469 NC_013174.1 2652576 2652974 R PFAM: membrane protein of unknown function; KEGG: ccs:CCNA_03194 integral membrane protein; hypothetical protein complement(2652576..2652974) Jonesia denitrificans DSM 20603 8381622 YP_003162405.1 CDS Jden_2470 NC_013174.1 2653046 2654134 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_0927 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2653046..2654134 Jonesia denitrificans DSM 20603 8381623 YP_003162406.1 CDS Jden_2471 NC_013174.1 2654197 2655249 R PFAM: Luciferase-like monooxygenase; KEGG: mno:Mnod_7218 luciferase-like monooxygenase; luciferase-like monooxygenase complement(2654197..2655249) Jonesia denitrificans DSM 20603 8381624 YP_003162407.1 CDS Jden_2472 NC_013174.1 2655342 2656901 D PFAM: GAF domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; GAF domain protein; KEGG: pzu:PHZ_c3236 methyl-accepting chemotaxis protein McpH; methyl-accepting chemotaxis sensory transducer with GAF sensor 2655342..2656901 Jonesia denitrificans DSM 20603 8381625 YP_003162408.1 CDS Jden_2473 NC_013174.1 2656891 2657865 R PFAM: alpha/beta hydrolase fold protein; KEGG: alpha/beta hydrolase protein; alpha/beta hydrolase fold protein complement(2656891..2657865) Jonesia denitrificans DSM 20603 8381626 YP_003162409.1 CDS Jden_2474 NC_013174.1 2657862 2659136 R hypothetical protein complement(2657862..2659136) Jonesia denitrificans DSM 20603 8381627 YP_003162410.1 CDS Jden_2475 NC_013174.1 2659146 2659397 R hypothetical protein complement(2659146..2659397) Jonesia denitrificans DSM 20603 8381628 YP_003162411.1 CDS Jden_2476 NC_013174.1 2659558 2661012 D KEGG: pmr:PMI0886 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; adenylosuccinate lyase 2659558..2661012 Jonesia denitrificans DSM 20603 8381629 YP_003162412.1 CDS Jden_2477 NC_013174.1 2661002 2661571 D hypothetical protein 2661002..2661571 Jonesia denitrificans DSM 20603 8381630 YP_003162413.1 CDS Jden_2478 NC_013174.1 2661604 2662098 D PFAM: glutathione peroxidase; KEGG: see:SNSL254_A1452 peroxiredoxin Hyr1; glutathione peroxidase 2661604..2662098 Jonesia denitrificans DSM 20603 8381631 YP_003162414.1 CDS Jden_2479 NC_013174.1 2662070 2664292 R PFAM: glycoside hydrolase clan GH-D; KEGG: mmw:Mmwyl1_2011 glycoside hydrolase clan GH-D; glycoside hydrolase clan GH-D complement(2662070..2664292) Jonesia denitrificans DSM 20603 8381632 YP_003162415.1 CDS Jden_2480 NC_013174.1 2664425 2665450 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family complement(2664425..2665450) Jonesia denitrificans DSM 20603 8381633 YP_003162416.1 CDS Jden_2481 NC_013174.1 2665519 2665764 R SMART: helix-turn-helix domain protein; KEGG: eli:ELI_14440 transcriptional regulator; XRE family transcriptional regulator complement(2665519..2665764) Jonesia denitrificans DSM 20603 8381634 YP_003162417.1 CDS Jden_2482 NC_013174.1 2665764 2666405 R hypothetical protein complement(2665764..2666405) Jonesia denitrificans DSM 20603 8381635 YP_003162418.1 CDS Jden_2483 NC_013174.1 2666514 2667224 R KEGG: bcy:Bcer98_2112 hypothetical protein; hypothetical protein complement(2666514..2667224) Jonesia denitrificans DSM 20603 8381636 YP_003162419.1 CDS Jden_2484 NC_013174.1 2667383 2668807 R PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; KEGG: scl:sce1624 hypothetical protein; glutamyl-tRNA reductase complement(2667383..2668807) Jonesia denitrificans DSM 20603 8381637 YP_003162420.1 CDS Jden_2485 NC_013174.1 2668856 2669917 D KEGG: bcb:BCB4264_A1103 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 2668856..2669917 Jonesia denitrificans DSM 20603 8381638 YP_003162421.1 CDS Jden_2486 NC_013174.1 2669914 2671302 D KEGG: sus:Acid_5204 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: FAD dependent oxidoreductase; protoporphyrinogen oxidase 2669914..2671302 Jonesia denitrificans DSM 20603 8381639 YP_003162422.1 CDS Jden_2487 NC_013174.1 2671499 2671813 R hypothetical protein complement(2671499..2671813) Jonesia denitrificans DSM 20603 8381640 YP_003162423.1 CDS Jden_2488 NC_013174.1 2671874 2672209 R hypothetical protein complement(2671874..2672209) Jonesia denitrificans DSM 20603 8381641 YP_003162424.1 CDS Jden_2489 NC_013174.1 2672393 2672623 D hypothetical protein 2672393..2672623 Jonesia denitrificans DSM 20603 8381642 YP_003162425.1 CDS Jden_2490 NC_013174.1 2672625 2673944 D PFAM: protein of unknown function DUF571; KEGG: hypothetical protein; hypothetical protein 2672625..2673944 Jonesia denitrificans DSM 20603 8381643 YP_003162426.1 CDS Jden_2491 NC_013174.1 2673941 2677882 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcz:BCZK1985 FtsK/SpoIIIE family protein; cell division protein FtsK 2673941..2677882 Jonesia denitrificans DSM 20603 8381644 YP_003162427.1 CDS Jden_2492 NC_013174.1 2677895 2678929 D KEGG: gme:Gmet_3234 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 2677895..2678929 Jonesia denitrificans DSM 20603 8381645 YP_003162428.1 CDS Jden_2493 NC_013174.1 2678922 2679776 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mxa:MXAN_2657 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 2678922..2679776 Jonesia denitrificans DSM 20603 8381646 YP_003162429.1 CDS Jden_2494 NC_013174.1 2679773 2680747 D PFAM: delta-aminolevulinic acid dehydratase; KEGG: mgm:Mmc1_3144 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 2679773..2680747 Jonesia denitrificans DSM 20603 8381647 YP_003162430.1 CDS Jden_2495 NC_013174.1 2680744 2682072 D TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: bav:BAV3016 glutamate-1-semialdehyde 2,1- aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 2680744..2682072 Jonesia denitrificans DSM 20603 8381648 YP_003162431.1 CDS Jden_2496 NC_013174.1 2682069 2682749 R PFAM: regulatory protein TetR; KEGG: psb:Psyr_3154 regulatory protein, TetR; TetR family transcriptional regulator complement(2682069..2682749) Jonesia denitrificans DSM 20603 8381649 YP_003162432.1 CDS Jden_2497 NC_013174.1 2683078 2683317 R hypothetical protein complement(2683078..2683317) Jonesia denitrificans DSM 20603 8381650 YP_003162433.1 CDS Jden_2498 NC_013174.1 2683409 2683936 R hypothetical protein complement(2683409..2683936) Jonesia denitrificans DSM 20603 8381651 YP_003162434.1 CDS Jden_2499 NC_013174.1 2684054 2684479 D PFAM: protein of unknown function DUF156; KEGG: xau:Xaut_3092 hypothetical protein; hypothetical protein 2684054..2684479 Jonesia denitrificans DSM 20603 8381652 YP_003162435.1 CDS Jden_2500 NC_013174.1 2684525 2684878 D PFAM: Heavy metal transport/detoxification protein; KEGG: cti:RALTA_A3125 putative copper ion binding protein; heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2684525..2684878 Jonesia denitrificans DSM 20603 8381653 YP_003162436.1 CDS Jden_2501 NC_013174.1 2685089 2687521 D TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BSU33500 hypothetical protein; heavy metal translocating P-type ATPase 2685089..2687521 Jonesia denitrificans DSM 20603 8381654 YP_003162437.1 CDS Jden_2502 NC_013174.1 2687561 2688241 D PFAM: copper resistance protein CopC; KEGG: bha:BH2291 hypothetical protein; copper resistance protein CopC 2687561..2688241 Jonesia denitrificans DSM 20603 8381655 YP_003162438.1 CDS Jden_2503 NC_013174.1 2688238 2689029 D PFAM: Abortive infection protein; KEGG: dal:Dalk_0566 abortive infection protein; Abortive infection protein 2688238..2689029 Jonesia denitrificans DSM 20603 8381656 YP_003162439.1 CDS Jden_2504 NC_013174.1 2689016 2689750 R KEGG: bav:BAV2421 membrane protein; hypothetical protein complement(2689016..2689750) Jonesia denitrificans DSM 20603 8381657 YP_003162440.1 CDS Jden_2505 NC_013174.1 2689884 2692472 D PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase; hypothetical protein 2689884..2692472 Jonesia denitrificans DSM 20603 8381658 YP_003162441.1 CDS Jden_2506 NC_013174.1 2692450 2693670 R PFAM: YibE/F family protein; KEGG: mgm:Mmc1_2300 YibE/F family protein; hypothetical protein complement(2692450..2693670) Jonesia denitrificans DSM 20603 8381659 YP_003162442.1 CDS Jden_2507 NC_013174.1 2693793 2694074 R PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: tcx:Tcr_1180 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2693793..2694074) Jonesia denitrificans DSM 20603 8381660 YP_003162443.1 CDS Jden_2508 NC_013174.1 2694298 2695482 D PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: psa:PST_0932 nucleotide methyltransferase, putative; rRNA (guanine-N(2)-)-methyltransferase 2694298..2695482 Jonesia denitrificans DSM 20603 8381661 YP_003162444.1 CDS Jden_2509 NC_013174.1 2695448 2696605 R PFAM: aminotransferase class I and II; KEGG: pfo:Pfl01_2696 aminotransferase, class I and II; class I and II aminotransferase complement(2695448..2696605) Jonesia denitrificans DSM 20603 8381662 YP_003162445.1 CDS Jden_2510 NC_013174.1 2696790 2697326 D SMART: regulatory protein MarR; KEGG: transcriptional regulator, MarR family; transcriptional regulator, MarR family 2696790..2697326 Jonesia denitrificans DSM 20603 8381663 YP_003162446.1 CDS Jden_2511 NC_013174.1 2697331 2698125 R KEGG: vha:VIBHAR_05800 hypothetical protein; hypothetical protein complement(2697331..2698125) Jonesia denitrificans DSM 20603 8381664 YP_003162447.1 CDS Jden_2512 NC_013174.1 2698122 2699033 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_03389 lantibiotic transport ATP- binding protein; ABC transporter complement(2698122..2699033) Jonesia denitrificans DSM 20603 8381665 YP_003162448.1 CDS Jden_2513 NC_013174.1 2699182 2700456 D PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase 2699182..2700456 Jonesia denitrificans DSM 20603 8381666 YP_003162449.1 CDS Jden_2514 NC_013174.1 2700463 2701155 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family 2700463..2701155 Jonesia denitrificans DSM 20603 8381667 YP_003162450.1 CDS Jden_2515 NC_013174.1 2701184 2701708 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_1544 hypothetical protein; transcriptional regulator, MarR family 2701184..2701708 Jonesia denitrificans DSM 20603 8381668 YP_003162451.1 CDS Jden_2516 NC_013174.1 2701694 2702683 R KEGG: sus:Acid_1173 alpha/beta hydrolase; Esterase/lipase-like protein complement(2701694..2702683) Jonesia denitrificans DSM 20603 8381669 YP_003162452.1 CDS Jden_2517 NC_013174.1 2702739 2703344 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: cvi:CV_3208 hypothetical protein; phospholipid/glycerol acyltransferase complement(2702739..2703344) Jonesia denitrificans DSM 20603 8381670 YP_003162453.1 CDS Jden_2518 NC_013174.1 2703510 2704313 R PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein; hypothetical protein complement(2703510..2704313) Jonesia denitrificans DSM 20603 8381671 YP_003162454.1 CDS Jden_2519 NC_013174.1 2704449 2705822 R TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: bha:BH4029 replicative DNA helicase; replicative DNA helicase complement(2704449..2705822) Jonesia denitrificans DSM 20603 8381672 YP_003162455.1 CDS Jden_2520 NC_013174.1 2705894 2706088 R hypothetical protein complement(2705894..2706088) Jonesia denitrificans DSM 20603 8381673 YP_003162456.1 CDS Jden_2521 NC_013174.1 2706157 2707524 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2162 MATE efflux family protein; MATE efflux family protein 2706157..2707524 Jonesia denitrificans DSM 20603 8381674 YP_003162457.1 CDS Jden_2522 NC_013174.1 2707652 2708104 R TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: gme:Gmet_2841 50S ribosomal protein L9; 50S ribosomal protein L9 complement(2707652..2708104) Jonesia denitrificans DSM 20603 8381675 YP_003162458.1 CDS Jden_2523 NC_013174.1 2708123 2708359 R TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: bha:BH4048 30S ribosomal protein S18; 30S ribosomal protein S18 complement(2708123..2708359) Jonesia denitrificans DSM 20603 8381676 YP_003162459.1 CDS Jden_2524 NC_013174.1 2708420 2708986 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bsu:BSU40900 single-strand DNA-binding protein; single-strand binding protein complement(2708420..2708986) Jonesia denitrificans DSM 20603 8381677 YP_003162460.1 CDS Jden_2525 NC_013174.1 2709038 2709325 R TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: gdi:GDI3333 30S ribosomal protein S6; 30S ribosomal protein S6 complement(2709038..2709325) Jonesia denitrificans DSM 20603 8381678 YP_003162461.1 CDS Jden_2526 NC_013174.1 2709550 2711844 R PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PT repeat-containing protein; KEGG: mes:Meso_3986 penicillin-binding protein, 1A family; peptidoglycan glycosyltransferase complement(2709550..2711844) Jonesia denitrificans DSM 20603 8381679 YP_003162462.1 CDS Jden_2527 NC_013174.1 2712149 2712757 D PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A2655 hypothetical protein; transcriptional regulator, PadR-like family 2712149..2712757 Jonesia denitrificans DSM 20603 8381680 YP_003162463.1 CDS Jden_2528 NC_013174.1 2712804 2713895 D TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: mno:Mnod_4642 myo-inositol-1-phosphate synthase; inositol 1-phosphate synthase 2712804..2713895 Jonesia denitrificans DSM 20603 8381681 YP_003162464.1 CDS Jden_2529 NC_013174.1 2714045 2715331 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5797 hypothetical protein; major facilitator superfamily protein 2714045..2715331 Jonesia denitrificans DSM 20603 8381682 YP_003162465.1 CDS Jden_2530 NC_013174.1 2715423 2715839 D hypothetical protein 2715423..2715839 Jonesia denitrificans DSM 20603 8381683 YP_003162466.1 CDS Jden_2531 NC_013174.1 2715836 2716756 D hypothetical protein 2715836..2716756 Jonesia denitrificans DSM 20603 8381684 YP_003162467.1 CDS Jden_2532 NC_013174.1 2716995 2717384 R hypothetical protein complement(2716995..2717384) Jonesia denitrificans DSM 20603 8381685 YP_003162468.1 CDS Jden_2533 NC_013174.1 2717789 2718934 D KEGG: pde:Pden_5043 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 2717789..2718934 Jonesia denitrificans DSM 20603 8381686 YP_003162469.1 CDS Jden_2534 NC_013174.1 2719330 2721771 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_0214 glycoside hydrolase family 3 protein; glycoside hydrolase family 3 2719330..2721771 Jonesia denitrificans DSM 20603 8381687 YP_003162470.1 CDS Jden_2535 NC_013174.1 2721834 2722475 D hypothetical protein 2721834..2722475 Jonesia denitrificans DSM 20603 8381688 YP_003162471.1 CDS Jden_2536 NC_013174.1 2722482 2723501 D PFAM: glycosyl transferase family 2; KEGG: bsu:BSU34300 hypothetical protein; family 2 glycosyl transferase 2722482..2723501 Jonesia denitrificans DSM 20603 8381689 YP_003162472.1 CDS Jden_2537 NC_013174.1 2723494 2726712 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: eca:ECA4114 putative lysine/ornithine decarboxylase; Orn/DAP/Arg decarboxylase 2 complement(2723494..2726712) Jonesia denitrificans DSM 20603 8381690 YP_003162473.1 CDS Jden_2538 NC_013174.1 2726713 2727771 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rso:RSp0417 cysteine synthase A protein; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2726713..2727771) Jonesia denitrificans DSM 20603 8381691 YP_003162474.1 CDS Jden_2539 NC_013174.1 2727921 2729516 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cti:RALTA_B0293 putative ABC transporter ATP- binding protein; ABC transporter complement(2727921..2729516) Jonesia denitrificans DSM 20603 8381692 YP_003162475.1 CDS Jden_2540 NC_013174.1 2729884 2730546 D PFAM: regulatory protein TetR; KEGG: ade:Adeh_1261 TetR family transcriptional regulator; TetR family transcriptional regulator 2729884..2730546 Jonesia denitrificans DSM 20603 8381693 YP_003162476.1 CDS Jden_2541 NC_013174.1 2730637 2731602 D KEGG: dol:Dole_1251 membrane protein; membrane protein 2730637..2731602 Jonesia denitrificans DSM 20603 8381694 YP_003162477.1 CDS Jden_2542 NC_013174.1 2731663 2733141 R KEGG: hypothetical protein; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(2731663..2733141) Jonesia denitrificans DSM 20603 8381695 YP_003162478.1 CDS Jden_2543 NC_013174.1 2733261 2733881 D PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; NUDIX hydrolase 2733261..2733881 Jonesia denitrificans DSM 20603 8381696 YP_003162479.1 CDS Jden_2544 NC_013174.1 2733916 2736378 D KEGG: similar to mucin 17; hypothetical protein 2733916..2736378 Jonesia denitrificans DSM 20603 8381697 YP_003162480.1 CDS Jden_2545 NC_013174.1 2736375 2738033 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN 2736375..2738033 Jonesia denitrificans DSM 20603 8381698 YP_003162481.1 CDS Jden_2546 NC_013174.1 2738100 2739785 D KEGG: aba:Acid345_1760 serine/threonine protein kinase; hypothetical protein 2738100..2739785 Jonesia denitrificans DSM 20603 8381699 YP_003162482.1 CDS Jden_2547 NC_013174.1 2739900 2740841 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_2753 thioredoxin reductase; thioredoxin reductase 2739900..2740841 Jonesia denitrificans DSM 20603 8381700 YP_003162483.1 CDS Jden_2548 NC_013174.1 2740852 2741181 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tcx:Tcr_0127 thioredoxin; thioredoxin 2740852..2741181 Jonesia denitrificans DSM 20603 8381701 YP_003162484.1 CDS Jden_2549 NC_013174.1 2741341 2742651 D PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein; GntR family transcriptional regulator 2741341..2742651 Jonesia denitrificans DSM 20603 8381702 YP_003162485.1 CDS Jden_2550 NC_013174.1 2742648 2743607 D PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; KEGG: ade:Adeh_3774 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 2742648..2743607 Jonesia denitrificans DSM 20603 8381703 YP_003162486.1 CDS Jden_2551 NC_013174.1 2743815 2744954 R KEGG: bsu:BSU40960 site-specific DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein complement(2743815..2744954) Jonesia denitrificans DSM 20603 8381704 YP_003162487.1 CDS Jden_2552 NC_013174.1 2744988 2745926 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH4058 centromere-like function involved in forespore chromosome partition; Cobyrinic acid ac-diamide synthase complement(2744988..2745926) Jonesia denitrificans DSM 20603 8381705 YP_003162488.1 CDS Jden_2553 NC_013174.1 2746267 2746899 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ccs:CCNA_03870 methyltransferase GidB; methyltransferase GidB complement(2746267..2746899) Jonesia denitrificans DSM 20603 8381706 YP_003162489.1 CDS Jden_2554 NC_013174.1 2746962 2747462 R PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: bha:BH4063 spoIIIJ-associated protein; single-stranded nucleic acid binding R3H domain-containing protein complement(2746962..2747462) Jonesia denitrificans DSM 20603 8381707 YP_003162490.1 CDS Jden_2555 NC_013174.1 2747492 2748439 R PFAM: 60 kDa inner membrane insertion protein; KEGG: bsu:BSU41040 OxaA-like protein precursor; 60 kDa inner membrane insertion protein complement(2747492..2748439) Jonesia denitrificans DSM 20603 8381708 YP_003162491.1 CDS Jden_2556 NC_013174.1 2748443 2748784 R PFAM: protein of unknown function DUF37; KEGG: pmy:Pmen_4540 hypothetical protein; hypothetical protein complement(2748443..2748784) Jonesia denitrificans DSM 20603 8381709 YP_003162492.1 CDS Jden_2557 NC_013174.1 2748781 2749056 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rsq:Rsph17025_0069 ribonuclease P protein component; ribonuclease P protein component complement(2748781..2749056) Jonesia denitrificans DSM 20603 8381710 YP_003162493.1 CDS Jden_2558 NC_013174.1 2749146 2749283 R TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: sus:Acid_1093 50S ribosomal protein L34P; 50S ribosomal protein L34 complement(2749146..2749283) Jonesia denitrificans DSM 20603 8381711 Jden_R0001 tRNA Jden_R0001 NC_013174.1 11060 11136 D tRNA-Ile 11060..11136 Jonesia denitrificans DSM 20603 8379209 Jden_R0002 tRNA Jden_R0002 NC_013174.1 11293 11365 D tRNA-Ala 11293..11365 Jonesia denitrificans DSM 20603 8379210 Jden_R0003 tRNA Jden_R0003 NC_013174.1 28653 28725 D tRNA-Ala 28653..28725 Jonesia denitrificans DSM 20603 8379225 Jden_R0004 tRNA Jden_R0004 NC_013174.1 189486 189568 D tRNA-Leu 189486..189568 Jonesia denitrificans DSM 20603 8379372 Jden_R0005 tRNA Jden_R0005 NC_013174.1 295561 295648 D tRNA-Ser 295561..295648 Jonesia denitrificans DSM 20603 8379470 Jden_R0006 tRNA Jden_R0006 NC_013174.1 308995 309084 D tRNA-Ser 308995..309084 Jonesia denitrificans DSM 20603 8379481 Jden_R0007 tRNA Jden_R0007 NC_013174.1 312952 313027 D tRNA-Arg 312952..313027 Jonesia denitrificans DSM 20603 8379485 Jden_R0008 tRNA Jden_R0008 NC_013174.1 316314 316389 D tRNA-Arg 316314..316389 Jonesia denitrificans DSM 20603 8379489 Jden_R0009 tRNA Jden_R0009 NC_013174.1 377634 377723 D tRNA-Ser 377634..377723 Jonesia denitrificans DSM 20603 8379548 Jden_R0010 tRNA Jden_R0010 NC_013174.1 433004 433092 R tRNA-Ser complement(433004..433092) Jonesia denitrificans DSM 20603 8381734 Jden_R0012 tRNA Jden_R0012 NC_013174.1 455714 455787 R tRNA-Pro complement(455714..455787) Jonesia denitrificans DSM 20603 8379616 Jden_R0013 tRNA Jden_R0013 NC_013174.1 457261 457337 R tRNA-Pro complement(457261..457337) Jonesia denitrificans DSM 20603 8379617 Jden_R0014 tRNA Jden_R0014 NC_013174.1 609341 609422 D tRNA-Tyr 609341..609422 Jonesia denitrificans DSM 20603 8379747 Jden_R0015 tRNA Jden_R0015 NC_013174.1 609655 609726 D tRNA-Thr 609655..609726 Jonesia denitrificans DSM 20603 8381740 Jden_R0016 tRNA Jden_R0016 NC_013174.1 609825 609901 D tRNA-Met 609825..609901 Jonesia denitrificans DSM 20603 8381741 Jden_R0017 tRNA Jden_R0017 NC_013174.1 622045 622120 D tRNA-Trp 622045..622120 Jonesia denitrificans DSM 20603 8379759 Jden_R0018 tRNA Jden_R0018 NC_013174.1 622259 622331 D tRNA-Trp 622259..622331 Jonesia denitrificans DSM 20603 8381743 Jden_R0023 tRNA Jden_R0023 NC_013174.1 789410 789486 D tRNA-Met 789410..789486 Jonesia denitrificans DSM 20603 8379912 Jden_R0024 tRNA Jden_R0024 NC_013174.1 789545 789621 D tRNA-Met 789545..789621 Jonesia denitrificans DSM 20603 8381749 Jden_R0026 tRNA Jden_R0026 NC_013174.1 955357 955438 R tRNA-Leu complement(955357..955438) Jonesia denitrificans DSM 20603 8380079 Jden_R0027 tRNA Jden_R0027 NC_013174.1 956997 957072 D tRNA-Lys 956997..957072 Jonesia denitrificans DSM 20603 8380082 Jden_R0028 tRNA Jden_R0028 NC_013174.1 957212 957287 D tRNA-Lys 957212..957287 Jonesia denitrificans DSM 20603 8381756 Jden_R0029 tRNA Jden_R0029 NC_013174.1 960142 960218 D tRNA-Arg 960142..960218 Jonesia denitrificans DSM 20603 8380087 Jden_R0030 tRNA Jden_R0030 NC_013174.1 962334 962409 D tRNA-His 962334..962409 Jonesia denitrificans DSM 20603 8380090 Jden_R0031 tRNA Jden_R0031 NC_013174.1 1008183 1008256 R tRNA-Gly complement(1008183..1008256) Jonesia denitrificans DSM 20603 8380130 Jden_R0036 tRNA Jden_R0036 NC_013174.1 1267692 1267779 R tRNA-Leu complement(1267692..1267779) Jonesia denitrificans DSM 20603 8380368 Jden_R0037 tRNA Jden_R0037 NC_013174.1 1267825 1267912 R tRNA-Leu complement(1267825..1267912) Jonesia denitrificans DSM 20603 8381770 Jden_R0038 tRNA Jden_R0038 NC_013174.1 1306129 1306202 R tRNA-Leu complement(1306129..1306202) Jonesia denitrificans DSM 20603 8380400 Jden_R0039 tRNA Jden_R0039 NC_013174.1 1365682 1365755 D tRNA-Pro 1365682..1365755 Jonesia denitrificans DSM 20603 8380451 Jden_R0040 tRNA Jden_R0040 NC_013174.1 1476429 1476503 R tRNA-Gly complement(1476429..1476503) Jonesia denitrificans DSM 20603 8380557 Jden_R0041 tRNA Jden_R0041 NC_013174.1 1480262 1480333 R tRNA-Val complement(1480262..1480333) Jonesia denitrificans DSM 20603 8380559 Jden_R0042 tRNA Jden_R0042 NC_013174.1 1480353 1480426 R tRNA-Cys complement(1480353..1480426) Jonesia denitrificans DSM 20603 8381775 Jden_R0043 tRNA Jden_R0043 NC_013174.1 1480460 1480531 R tRNA-Gly complement(1480460..1480531) Jonesia denitrificans DSM 20603 8381776 Jden_R0044 tRNA Jden_R0044 NC_013174.1 1482757 1482831 D tRNA-Val 1482757..1482831 Jonesia denitrificans DSM 20603 8380561 Jden_R0046 tRNA Jden_R0046 NC_013174.1 1607960 1608036 D tRNA-Val 1607960..1608036 Jonesia denitrificans DSM 20603 8380669 Jden_R0047 tRNA Jden_R0047 NC_013174.1 1632654 1632730 R tRNA-Met complement(1632654..1632730) Jonesia denitrificans DSM 20603 8380690 Jden_R0048 tRNA Jden_R0048 NC_013174.1 1633437 1633511 D tRNA-Asn 1633437..1633511 Jonesia denitrificans DSM 20603 8380691 Jden_R0049 tRNA Jden_R0049 NC_013174.1 1633531 1633605 D tRNA-Asn 1633531..1633605 Jonesia denitrificans DSM 20603 8381790 Jden_R0050 tRNA Jden_R0050 NC_013174.1 1764832 1764904 R tRNA-Ala complement(1764832..1764904) Jonesia denitrificans DSM 20603 8380804 Jden_R0051 tRNA Jden_R0051 NC_013174.1 1820256 1820331 R tRNA-Glu complement(1820256..1820331) Jonesia denitrificans DSM 20603 8380854 Jden_R0052 tRNA Jden_R0052 NC_013174.1 1820529 1820604 R tRNA-Glu complement(1820529..1820604) Jonesia denitrificans DSM 20603 8381795 Jden_R0053 tRNA Jden_R0053 NC_013174.1 1820642 1820713 R tRNA-Gln complement(1820642..1820713) Jonesia denitrificans DSM 20603 8381796 Jden_R0058 tRNA Jden_R0058 NC_013174.1 1958897 1958972 D tRNA-Arg 1958897..1958972 Jonesia denitrificans DSM 20603 8380959 Jden_R0059 tRNA Jden_R0059 NC_013174.1 2099529 2099604 R tRNA-Leu complement(2099529..2099604) Jonesia denitrificans DSM 20603 8381083 Jden_R0060 tRNA Jden_R0060 NC_013174.1 2132246 2132320 R tRNA-Gln complement(2132246..2132320) Jonesia denitrificans DSM 20603 8381105 Jden_R0061 tRNA Jden_R0061 NC_013174.1 2177152 2177224 R tRNA-Arg complement(2177152..2177224) Jonesia denitrificans DSM 20603 8381812 Jden_R0062 tRNA Jden_R0062 NC_013174.1 2249225 2249299 R tRNA-Thr complement(2249225..2249299) Jonesia denitrificans DSM 20603 8381220 Jden_R0063 tRNA Jden_R0063 NC_013174.1 2324793 2324863 R tRNA-Thr complement(2324793..2324863) Jonesia denitrificans DSM 20603 8381284 Jden_R0064 tRNA Jden_R0064 NC_013174.1 2365032 2365107 R tRNA-Thr complement(2365032..2365107) Jonesia denitrificans DSM 20603 8381350 Jden_R0071 tRNA Jden_R0071 NC_013174.1 2434928 2435003 D tRNA-Lys 2434928..2435003 Jonesia denitrificans DSM 20603 8381403 Jden_R0072 tRNA Jden_R0072 NC_013174.1 2459519 2459591 D tRNA-Glu 2459519..2459591 Jonesia denitrificans DSM 20603 8381426 Jden_R0073 tRNA Jden_R0073 NC_013174.1 2459633 2459706 D tRNA-Asp 2459633..2459706 Jonesia denitrificans DSM 20603 8381827 Jden_R0074 tRNA Jden_R0074 NC_013174.1 2459751 2459824 D tRNA-Asp 2459751..2459824 Jonesia denitrificans DSM 20603 8381828 Jden_R0075 tRNA Jden_R0075 NC_013174.1 2459846 2459921 D tRNA-Phe 2459846..2459921 Jonesia denitrificans DSM 20603 8381829 Jden_R0080 tRNA Jden_R0080 NC_013174.1 2617564 2617637 D tRNA-Gly 2617564..2617637 Jonesia denitrificans DSM 20603 8381595 Jden_R0019 rRNA Jden_R0019 NC_013174.1 721228 722761 D 16S ribosomal RNA 721228..722761 Jonesia denitrificans DSM 20603 8379860 Jden_R0020 rRNA Jden_R0020 NC_013174.1 723122 726220 D 23S ribosomal RNA join(723122..724627,724731..726220) Jonesia denitrificans DSM 20603 8381745 Jden_R0021 rRNA Jden_R0021 NC_013174.1 726320 726436 D 5S ribosomal RNA 726320..726436 Jonesia denitrificans DSM 20603 8381746 Jden_R0022 rRNA Jden_R0022 NC_013174.1 726322 726438 D 5S ribosomal RNA 726322..726438 Jonesia denitrificans DSM 20603 8381747 Jden_R0032 rRNA Jden_R0032 NC_013174.1 1193267 1194798 D 16S ribosomal RNA 1193267..1194798 Jonesia denitrificans DSM 20603 8380298 Jden_R0033 rRNA Jden_R0033 NC_013174.1 1195148 1198246 D 23S ribosomal RNA join(1195148..1196654,1196757..1198246) Jonesia denitrificans DSM 20603 8381766 Jden_R0034 rRNA Jden_R0034 NC_013174.1 1198346 1198462 D 5S ribosomal RNA 1198346..1198462 Jonesia denitrificans DSM 20603 8381767 Jden_R0035 rRNA Jden_R0035 NC_013174.1 1198348 1198464 D 5S ribosomal RNA 1198348..1198464 Jonesia denitrificans DSM 20603 8381768 Jden_R0054 rRNA Jden_R0054 NC_013174.1 1853288 1853404 R 5S ribosomal RNA complement(1853288..1853404) Jonesia denitrificans DSM 20603 8380883 Jden_R0055 rRNA Jden_R0055 NC_013174.1 1853290 1853406 R 5S ribosomal RNA complement(1853290..1853406) Jonesia denitrificans DSM 20603 8381798 Jden_R0056 rRNA Jden_R0056 NC_013174.1 1853501 1856598 R 23S ribosomal RNA complement(join(1853501..1854991,1855093..1856598)) Jonesia denitrificans DSM 20603 8381799 Jden_R0057 rRNA Jden_R0057 NC_013174.1 1856960 1858491 R 16S ribosomal RNA complement(1856960..1858491) Jonesia denitrificans DSM 20603 8381800 Jden_R0065 rRNA Jden_R0065 NC_013174.1 2394719 2394834 R 5S ribosomal RNA complement(2394719..2394834) Jonesia denitrificans DSM 20603 8381373 Jden_R0066 rRNA Jden_R0066 NC_013174.1 2394720 2394836 R 5S ribosomal RNA complement(2394720..2394836) Jonesia denitrificans DSM 20603 8381818 Jden_R0067 rRNA Jden_R0067 NC_013174.1 2395762 2395878 R 5S ribosomal RNA complement(2395762..2395878) Jonesia denitrificans DSM 20603 8381374 Jden_R0068 rRNA Jden_R0068 NC_013174.1 2395764 2395880 R 5S ribosomal RNA complement(2395764..2395880) Jonesia denitrificans DSM 20603 8381820 Jden_R0069 rRNA Jden_R0069 NC_013174.1 2395986 2399084 R 23S ribosomal RNA complement(join(2395986..2397475,2397578..2399084)) Jonesia denitrificans DSM 20603 8381821 Jden_R0070 rRNA Jden_R0070 NC_013174.1 2399449 2400982 R 16S ribosomal RNA complement(2399449..2400982) Jonesia denitrificans DSM 20603 8381822 Jden_R0076 rRNA Jden_R0076 NC_013174.1 2578766 2578882 R 5S ribosomal RNA complement(2578766..2578882) Jonesia denitrificans DSM 20603 8381562 Jden_R0077 rRNA Jden_R0077 NC_013174.1 2578768 2578884 R 5S ribosomal RNA complement(2578768..2578884) Jonesia denitrificans DSM 20603 8381834 Jden_R0078 rRNA Jden_R0078 NC_013174.1 2578986 2582084 R 23S ribosomal RNA complement(join(2578986..2580475,2580581..2582084)) Jonesia denitrificans DSM 20603 8381835 Jden_R0079 rRNA Jden_R0079 NC_013174.1 2582434 2583965 R 16S ribosomal RNA complement(2582434..2583965) Jonesia denitrificans DSM 20603 8381836