-- dump date 20140619_120355 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003159983.1 256831256 8381839 159..1589 1 NC_013174.1 KEGG: bha:BH0001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 1589 8381839 Jden_0001 Jonesia denitrificans DSM 20603 chromosomal replication initiator protein DnaA YP_003159983.1 159 D 471856 CDS YP_003159984.1 256831257 8379202 2173..3303 1 NC_013174.1 KEGG: bcz:BCZK0002 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 3303 8379202 Jden_0002 Jonesia denitrificans DSM 20603 DNA polymerase III subunit beta YP_003159984.1 2173 D 471856 CDS YP_003159985.1 256831258 8379203 3384..4631 1 NC_013174.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bcu:BCAH820_0004 DNA replication and repair protein RecF; DNA replication and repair protein RecF 4631 8379203 Jden_0003 Jonesia denitrificans DSM 20603 DNA replication and repair protein RecF YP_003159985.1 3384 D 471856 CDS YP_003159986.1 256831259 8379204 4618..5133 1 NC_013174.1 PFAM: protein of unknown function DUF721; KEGG: dal:Dalk_0721 protein of unknown function DUF721; hypothetical protein 5133 8379204 Jden_0004 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159986.1 4618 D 471856 CDS YP_003159987.1 256831260 8379205 5370..7430 1 NC_013174.1 KEGG: bha:BH0006 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 7430 8379205 Jden_0005 Jonesia denitrificans DSM 20603 DNA gyrase subunit B YP_003159987.1 5370 D 471856 CDS YP_003159988.1 256831261 8379206 7495..10110 1 NC_013174.1 KEGG: gsu:GSU0004 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 10110 8379206 Jden_0006 Jonesia denitrificans DSM 20603 DNA gyrase subunit A YP_003159988.1 7495 D 471856 CDS YP_003159989.1 256831262 8379207 complement(10316..10498) 1 NC_013174.1 hypothetical protein 10498 8379207 Jden_0007 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159989.1 10316 R 471856 CDS YP_003159990.1 256831263 8379208 10545..10952 1 NC_013174.1 hypothetical protein 10952 8379208 Jden_0008 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159990.1 10545 D 471856 CDS YP_003159991.1 256831264 8381712 11158..11277 1 NC_013174.1 hypothetical protein 11277 8381712 Jden_0009 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159991.1 11158 D 471856 CDS YP_003159992.1 256831265 8381713 complement(11427..11801) 1 NC_013174.1 hypothetical protein 11801 8381713 Jden_0010 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159992.1 11427 R 471856 CDS YP_003159993.1 256831266 8379211 11938..12816 1 NC_013174.1 SMART: AAA ATPase; KEGG: scl:sce9135 protein kinase; ATPase AAA 12816 8379211 Jden_0011 Jonesia denitrificans DSM 20603 ATPase AAA YP_003159993.1 11938 D 471856 CDS YP_003159994.1 256831267 8379212 complement(12869..14122) 1 NC_013174.1 PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein; glycoside hydrolase family protein 14122 8379212 Jden_0012 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003159994.1 12869 R 471856 CDS YP_003159995.1 256831268 8379213 complement(14192..15859) 1 NC_013174.1 KEGG: bha:BH1004 hypothetical protein; hypothetical protein 15859 8379213 Jden_0013 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159995.1 14192 R 471856 CDS YP_003159996.1 256831269 8379214 complement(15856..16758) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein; ABC transporter 16758 8379214 Jden_0014 Jonesia denitrificans DSM 20603 ABC transporter YP_003159996.1 15856 R 471856 CDS YP_003159997.1 256831270 8379215 16989..18386 1 NC_013174.1 PFAM: protein of unknown function DUF195; KEGG: bxe:Bxe_A1056 hypothetical protein; hypothetical protein 18386 8379215 Jden_0015 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159997.1 16989 D 471856 CDS YP_003159998.1 256831271 8379216 complement(18470..19663) 1 NC_013174.1 KEGG: hypothetical protein LOC100013274; hypothetical protein 19663 8379216 Jden_0016 Jonesia denitrificans DSM 20603 hypothetical protein YP_003159998.1 18470 R 471856 CDS YP_003159999.1 256831272 8379217 complement(19689..20516) 1 NC_013174.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpi:Rpic_1798 cytochrome c biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane region 20516 8379217 Jden_0017 Jonesia denitrificans DSM 20603 cytochrome c biogenesis protein transmembrane region YP_003159999.1 19689 R 471856 CDS YP_003160000.1 256831273 8379218 complement(20526..21425) 1 NC_013174.1 PFAM: DSBA oxidoreductase; KEGG: afw:Anae109_0475 DsbA oxidoreductase; DSBA oxidoreductase 21425 8379218 Jden_0018 Jonesia denitrificans DSM 20603 DSBA oxidoreductase YP_003160000.1 20526 R 471856 CDS YP_003160001.1 256831274 8379219 21706..22110 1 NC_013174.1 hypothetical protein 22110 8379219 Jden_0019 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160001.1 21706 D 471856 CDS YP_003160002.1 256831275 8379220 22211..22894 1 NC_013174.1 KEGG: ypi:YpsIP31758_0672 hypothetical protein; hypothetical protein 22894 8379220 Jden_0020 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160002.1 22211 D 471856 CDS YP_003160003.1 256831276 8379221 22966..23403 1 NC_013174.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: sdy:SDY_2867 ribonucleotide reductase stimulatory protein; NrdI protein 23403 8379221 Jden_0021 Jonesia denitrificans DSM 20603 NrdI protein YP_003160003.1 22966 D 471856 CDS YP_003160004.1 256831277 8379222 complement(23421..25163) 1 NC_013174.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pzu:PHZ_c1942 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 25163 8379222 Jden_0022 Jonesia denitrificans DSM 20603 choline/carnitine/betaine transporter YP_003160004.1 23421 R 471856 CDS YP_003160005.1 256831278 8379223 25216..26469 1 NC_013174.1 KEGG: nmu:Nmul_A0853 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 26469 8379223 Jden_0023 Jonesia denitrificans DSM 20603 amidohydrolase YP_003160005.1 25216 D 471856 CDS YP_003160006.1 256831279 8379224 complement(26505..28241) 1 NC_013174.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: psb:Psyr_2314 pyruvate dehydrogenase; thiamine pyrophosphate protein TPP binding domain-containing protein 28241 8379224 Jden_0024 Jonesia denitrificans DSM 20603 thiamine pyrophosphate protein TPP binding domain-containing protein YP_003160006.1 26505 R 471856 CDS YP_003160007.1 256831280 8381714 28750..29658 1 NC_013174.1 hypothetical protein 29658 8381714 Jden_0025 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160007.1 28750 D 471856 CDS YP_003160008.1 256831281 8379226 29869..30453 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 30453 8379226 Jden_0026 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160008.1 29869 D 471856 CDS YP_003160009.1 256831282 8379227 complement(30493..31551) 1 NC_013174.1 PFAM: MMPL domain protein; KEGG: bcz:BCZK2163 MmpL family integral membrane protein; MMPL domain-containing protein 31551 8379227 Jden_0027 Jonesia denitrificans DSM 20603 MMPL domain-containing protein YP_003160009.1 30493 R 471856 CDS YP_003160010.1 256831283 8379228 31937..32971 1 NC_013174.1 PFAM: glycosyl transferase group 1; KEGG: vvy:VVA0389 glycosyltransferase; group 1 glycosyl transferase 32971 8379228 Jden_0028 Jonesia denitrificans DSM 20603 group 1 glycosyl transferase YP_003160010.1 31937 D 471856 CDS YP_003160011.1 256831284 8379229 32968..34044 1 NC_013174.1 PFAM: glycosyl transferase group 1; KEGG: eci:UTI89_C2304 putative glycosyltransferase WbdM; group 1 glycosyl transferase 34044 8379229 Jden_0029 Jonesia denitrificans DSM 20603 group 1 glycosyl transferase YP_003160011.1 32968 D 471856 CDS YP_003160012.1 256831285 8379230 34041..35084 1 NC_013174.1 KEGG: bur:Bcep18194_B2868 hypothetical protein; hypothetical protein 35084 8379230 Jden_0030 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160012.1 34041 D 471856 CDS YP_003160013.1 256831286 8379231 35081..36991 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: hch:HCH_03420 hypothetical protein; family 2 glycosyl transferase 36991 8379231 Jden_0031 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003160013.1 35081 D 471856 CDS YP_003160014.1 256831287 8379232 36984..38447 1 NC_013174.1 PFAM: polysaccharide biosynthesis protein; KEGG: xfa:XF2362 GumJ protein; polysaccharide biosynthesis protein 38447 8379232 Jden_0032 Jonesia denitrificans DSM 20603 polysaccharide biosynthesis protein YP_003160014.1 36984 D 471856 CDS YP_003160015.1 256831288 8379233 38440..39696 1 NC_013174.1 KEGG: smd:Smed_4574 hypothetical protein; hypothetical protein 39696 8379233 Jden_0033 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160015.1 38440 D 471856 CDS YP_003160016.1 256831289 8379234 complement(40517..41839) 1 NC_013174.1 KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 41839 8379234 Jden_0034 Jonesia denitrificans DSM 20603 nucleotide sugar dehydrogenase YP_003160016.1 40517 R 471856 CDS YP_003160017.1 256831290 8379235 complement(41893..43356) 1 NC_013174.1 KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 43356 8379235 Jden_0035 Jonesia denitrificans DSM 20603 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_003160017.1 41893 R 471856 CDS YP_003160018.1 256831291 8379236 complement(43344..44336) 1 NC_013174.1 KEGG: rme:Rmet_3650 putative hemagglutinin-related transmembrane protein; hypothetical protein 44336 8379236 Jden_0036 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160018.1 43344 R 471856 CDS YP_003160019.1 256831292 8379237 complement(44338..44967) 1 NC_013174.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: tmz:Tmz1t_1137 protein tyrosine phosphatase; protein tyrosine phosphatase 44967 8379237 Jden_0037 Jonesia denitrificans DSM 20603 protein tyrosine phosphatase YP_003160019.1 44338 R 471856 CDS YP_003160020.1 256831293 8379238 complement(44967..46391) 1 NC_013174.1 KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein 46391 8379238 Jden_0038 Jonesia denitrificans DSM 20603 capsular polysaccharide biosynthesis protein YP_003160020.1 44967 R 471856 CDS YP_003160021.1 256831294 8379239 47216..47626 1 NC_013174.1 hypothetical protein 47626 8379239 Jden_0039 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160021.1 47216 D 471856 CDS YP_003160022.1 256831295 8379240 48160..48543 1 NC_013174.1 hypothetical protein 48543 8379240 Jden_0040 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160022.1 48160 D 471856 CDS YP_003160023.1 256831296 8379241 48894..49031 1 NC_013174.1 hypothetical protein 49031 8379241 Jden_0041 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160023.1 48894 D 471856 CDS YP_003160024.1 256831297 8379242 49134..51164 1 NC_013174.1 KEGG: rso:RS05070 putative hemagglutinin/hemolysin- related protein; hypothetical protein 51164 8379242 Jden_0042 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160024.1 49134 D 471856 CDS YP_003160025.1 256831298 8379243 51223..51864 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0281 ABC transporter ATP-binding protein; ABC transporter 51864 8379243 Jden_0043 Jonesia denitrificans DSM 20603 ABC transporter YP_003160025.1 51223 D 471856 CDS YP_003160026.1 256831299 8379244 complement(52048..53307) 1 NC_013174.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: afw:Anae109_0607 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 53307 8379244 Jden_0044 Jonesia denitrificans DSM 20603 filamentation induced by cAMP protein fic YP_003160026.1 52048 R 471856 CDS YP_003160027.1 256831300 8381715 complement(54807..55928) 1 NC_013174.1 KEGG: rec:RHECIAT_CH0003374 putative DNA alkylation repair protein; putative DNA alkylation repair protein 55928 8381715 Jden_0046 Jonesia denitrificans DSM 20603 putative DNA alkylation repair protein YP_003160027.1 54807 R 471856 CDS YP_003160028.1 256831301 8379246 complement(56064..57224) 1 NC_013174.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_7329 radical SAM domain-containing protein; radical SAM protein 57224 8379246 Jden_0047 Jonesia denitrificans DSM 20603 radical SAM protein YP_003160028.1 56064 R 471856 CDS YP_003160029.1 256831302 8379247 57270..57416 1 NC_013174.1 hypothetical protein 57416 8379247 Jden_0048 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160029.1 57270 D 471856 CDS YP_003160030.1 256831303 8381716 58074..58712 1 NC_013174.1 PFAM: protein of unknown function DUF161; KEGG: atc:AGR_C_867 hypothetical protein; hypothetical protein 58712 8381716 Jden_0050 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160030.1 58074 D 471856 CDS YP_003160031.1 256831304 8379249 complement(58709..60238) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1369 major facilitator superfamily MFS_1; major facilitator superfamily protein 60238 8379249 Jden_0051 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160031.1 58709 R 471856 CDS YP_003160032.1 256831305 8379250 60497..61063 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_4404 transcriptional regulator, TetR family; TetR family transcriptional regulator 61063 8379250 Jden_0052 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160032.1 60497 D 471856 CDS YP_003160033.1 256831306 8379251 complement(61067..61987) 1 NC_013174.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: acr:Acry_2159 LysR family transcriptional regulator; LysR family transcriptional regulator 61987 8379251 Jden_0053 Jonesia denitrificans DSM 20603 LysR family transcriptional regulator YP_003160033.1 61067 R 471856 CDS YP_003160034.1 256831307 8379252 62058..63200 1 NC_013174.1 PFAM: conserved hypothetical protein; KEGG: rru:Rru_A0605 hypothetical protein; hypothetical protein 63200 8379252 Jden_0054 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160034.1 62058 D 471856 CDS YP_003160035.1 256831308 8381717 complement(65970..66329) 1 NC_013174.1 hypothetical protein 66329 8381717 Jden_0056 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160035.1 65970 R 471856 CDS YP_003160036.1 256831309 8379254 complement(66331..66912) 1 NC_013174.1 KEGG: bcb:BCB4264_A5165 hypothetical protein; hypothetical protein 66912 8379254 Jden_0057 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160036.1 66331 R 471856 CDS YP_003160037.1 256831310 8379255 67144..67302 1 NC_013174.1 hypothetical protein 67302 8379255 Jden_0058 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160037.1 67144 D 471856 CDS YP_003160038.1 256831311 8379256 complement(67320..67496) 1 NC_013174.1 hypothetical protein 67496 8379256 Jden_0059 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160038.1 67320 R 471856 CDS YP_003160039.1 256831312 8379257 complement(67547..68113) 1 NC_013174.1 KEGG: PHD finger domain protein; K11380 NuA3 HAT complex component NTO1; hypothetical protein 68113 8379257 Jden_0060 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160039.1 67547 R 471856 CDS YP_003160040.1 256831313 8379258 68251..68463 1 NC_013174.1 hypothetical protein 68463 8379258 Jden_0061 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160040.1 68251 D 471856 CDS YP_003160041.1 256831314 8379259 68694..71258 1 NC_013174.1 PFAM: alpha-L-arabinofuranosidase B; KEGG: eca:ECA0931 putative avirulence protein; alpha-L-arabinofuranosidase 71258 8379259 Jden_0062 Jonesia denitrificans DSM 20603 alpha-L-arabinofuranosidase YP_003160041.1 68694 D 471856 CDS YP_003160042.1 256831315 8379260 71792..72553 1 NC_013174.1 PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: bmj:BMULJ_04844 DeoR family fructose operon transcriptional repressor; Cro/CI family transcriptional regulator 72553 8379260 Jden_0063 Jonesia denitrificans DSM 20603 Cro/CI family transcriptional regulator YP_003160042.1 71792 D 471856 CDS YP_003160043.1 256831316 8379261 72550..73497 1 NC_013174.1 KEGG: mpo:Mpop_1188 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 73497 8379261 Jden_0064 Jonesia denitrificans DSM 20603 1-phosphofructokinase YP_003160043.1 72550 D 471856 CDS YP_003160044.1 256831317 8379262 73499..73951 1 NC_013174.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ppr:PBPRA2715 putative PTS system, fructose- specific IIABC component; putative PTS IIA-like nitrogen-regulatory protein PtsN 73951 8379262 Jden_0065 Jonesia denitrificans DSM 20603 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003160044.1 73499 D 471856 CDS YP_003160045.1 256831318 8379263 73948..75459 1 NC_013174.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: bte:BTH_II0908 protein-N p-phosphohistidine- sugar phosphotransferase; PTS system fructose subfamily transporter subunit IIC 75459 8379263 Jden_0066 Jonesia denitrificans DSM 20603 PTS system fructose subfamily transporter subunit IIC YP_003160045.1 73948 D 471856 CDS YP_003160046.1 256831319 8379264 75491..75763 1 NC_013174.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cak:Caul_4626 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 75763 8379264 Jden_0067 Jonesia denitrificans DSM 20603 phosphotransferase system, phosphocarrier protein HPr YP_003160046.1 75491 D 471856 CDS YP_003160047.1 256831320 8379265 75760..77469 1 NC_013174.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: phosphoenolpyruvate--protein phosphotransferase; K02768 PTS system, fructose- specific IIA component; phosphoenolpyruvate-protein phosphotransferase 77469 8379265 Jden_0068 Jonesia denitrificans DSM 20603 phosphoenolpyruvate-protein phosphotransferase YP_003160047.1 75760 D 471856 CDS YP_003160048.1 256831321 8379266 complement(77553..77855) 1 NC_013174.1 PFAM: ribosomal protein S14; KEGG: mxa:MXAN_6528 ribosomal protein S14; 30S ribosomal protein S14 77855 8379266 Jden_0069 Jonesia denitrificans DSM 20603 30S ribosomal protein S14 YP_003160048.1 77553 R 471856 CDS YP_003160049.1 256831322 8379267 77879..78115 1 NC_013174.1 hypothetical protein 78115 8379267 Jden_0070 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160049.1 77879 D 471856 CDS YP_003160050.1 256831323 8379268 78160..78282 1 NC_013174.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: gox:GOX0732 50S ribosomal protein L36; 50S ribosomal protein L36 78282 8379268 Jden_0071 Jonesia denitrificans DSM 20603 50S ribosomal protein L36 YP_003160050.1 78160 D 471856 CDS YP_003160051.1 256831324 8379269 78421..79776 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mxa:MXAN_0278 mercuric reductase, truncated; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 79776 8379269 Jden_0072 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003160051.1 78421 D 471856 CDS YP_003160052.1 256831325 8379270 complement(79851..80885) 1 NC_013174.1 KEGG: rce:RC1_3391 transferase, putative; transferase 80885 8379270 Jden_0073 Jonesia denitrificans DSM 20603 transferase YP_003160052.1 79851 R 471856 CDS YP_003160053.1 256831326 8379271 81065..82297 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: sil:SPO1430 antibiotic efflux protein; major facilitator superfamily protein 82297 8379271 Jden_0074 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160053.1 81065 D 471856 CDS YP_003160054.1 256831327 8379272 82555..83148 1 NC_013174.1 SMART: regulatory protein ArsR; KEGG: rle:RL3148 putative transcriptional regulator; regulatory protein ArsR 83148 8379272 Jden_0075 Jonesia denitrificans DSM 20603 regulatory protein ArsR YP_003160054.1 82555 D 471856 CDS YP_003160055.1 256831328 8379273 84691..86025 1 NC_013174.1 PFAM: Radical SAM domain protein; KEGG: cvi:CV_0072 hypothetical protein; radical SAM protein 86025 8379273 Jden_0076 Jonesia denitrificans DSM 20603 radical SAM protein YP_003160055.1 84691 D 471856 CDS YP_003160056.1 256831329 8379274 86109..86537 1 NC_013174.1 PFAM: YCII-related; KEGG: pau:PA14_46770 hypothetical protein; YCII-like protein 86537 8379274 Jden_0077 Jonesia denitrificans DSM 20603 YCII-like protein YP_003160056.1 86109 D 471856 CDS YP_003160057.1 256831330 8379275 complement(86563..88083) 1 NC_013174.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: yen:YE0973 putative membrane transport protein; sulfate transporter 88083 8379275 Jden_0078 Jonesia denitrificans DSM 20603 sulfate transporter YP_003160057.1 86563 R 471856 CDS YP_003160058.1 256831331 8379276 complement(88169..89740) 1 NC_013174.1 TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: mxa:MXAN_5992 peptide chain release factor 3; small GTP-binding protein 89740 8379276 Jden_0079 Jonesia denitrificans DSM 20603 small GTP-binding protein YP_003160058.1 88169 R 471856 CDS YP_003160059.1 256831332 8379277 complement(89737..90150) 1 NC_013174.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: eli:ELI_04465 transcriptional regulator, MerR family protein; transcriptional regulator, MerR family 90150 8379277 Jden_0080 Jonesia denitrificans DSM 20603 transcriptional regulator, MerR family YP_003160059.1 89737 R 471856 CDS YP_003160060.1 256831333 8379278 90685..91191 1 NC_013174.1 hypothetical protein 91191 8379278 Jden_0081 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160060.1 90685 D 471856 CDS YP_003160061.1 256831334 8379279 91215..92390 1 NC_013174.1 KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; hypothetical protein 92390 8379279 Jden_0082 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160061.1 91215 D 471856 CDS YP_003160062.1 256831335 8379280 92387..93025 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppw:PputW619_3534 ABC transporter related; ABC transporter 93025 8379280 Jden_0083 Jonesia denitrificans DSM 20603 ABC transporter YP_003160062.1 92387 D 471856 CDS YP_003160063.1 256831336 8379281 93022..94125 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0721 ABC efflux pump, inner membrane subunit; hypothetical protein 94125 8379281 Jden_0084 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160063.1 93022 D 471856 CDS YP_003160064.1 256831337 8379282 94383..94868 1 NC_013174.1 hypothetical protein 94868 8379282 Jden_0085 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160064.1 94383 D 471856 CDS YP_003160065.1 256831338 8379283 complement(94875..96443) 1 NC_013174.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: bcr:BCAH187_A3177 MATE efflux family protein; MATE efflux family protein 96443 8379283 Jden_0086 Jonesia denitrificans DSM 20603 MATE efflux family protein YP_003160065.1 94875 R 471856 CDS YP_003160066.1 256831339 8379284 96784..97476 1 NC_013174.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: nar:Saro_3256 uracil-DNA glycosylase; uracil-DNA glycosylase 97476 8379284 Jden_0087 Jonesia denitrificans DSM 20603 uracil-DNA glycosylase YP_003160066.1 96784 D 471856 CDS YP_003160067.1 256831340 8379285 97823..98506 1 NC_013174.1 PFAM: YKOF domain protein; KEGG: mlo:mll1759 hypothetical protein; hypothetical protein 98506 8379285 Jden_0088 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160067.1 97823 D 471856 CDS YP_003160068.1 256831341 8379286 98587..99201 1 NC_013174.1 KEGG: bsu:BSU13230 hypothetical protein; hypothetical protein 99201 8379286 Jden_0089 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160068.1 98587 D 471856 CDS YP_003160069.1 256831342 8379287 99198..100922 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU13220 hypothetical protein; ABC transporter 100922 8379287 Jden_0090 Jonesia denitrificans DSM 20603 ABC transporter YP_003160069.1 99198 D 471856 CDS YP_003160070.1 256831343 8379288 100919..101695 1 NC_013174.1 PFAM: cobalt transport protein; KEGG: bsu:BSU13210 hypothetical protein; cobalt transport protein 101695 8379288 Jden_0091 Jonesia denitrificans DSM 20603 cobalt transport protein YP_003160070.1 100919 D 471856 CDS YP_003160071.1 256831344 8379289 complement(101703..102947) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_1864 major facilitator transporter; major facilitator superfamily protein 102947 8379289 Jden_0092 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160071.1 101703 R 471856 CDS YP_003160072.1 256831345 8379290 complement(102958..103683) 1 NC_013174.1 PFAM: ExsB family protein; KEGG: ilo:IL0914 PP-loop superfamily ATPase; ExsB family protein 103683 8379290 Jden_0093 Jonesia denitrificans DSM 20603 ExsB family protein YP_003160072.1 102958 R 471856 CDS YP_003160073.1 256831346 8379291 complement(103990..104283) 1 NC_013174.1 PFAM: SirA family protein; KEGG: ilo:IL0009 redox protein, regulator of disulfide bond formation; SirA family protein 104283 8379291 Jden_0094 Jonesia denitrificans DSM 20603 SirA family protein YP_003160073.1 103990 R 471856 CDS YP_003160074.1 256831347 8379292 complement(104411..104788) 1 NC_013174.1 hypothetical protein 104788 8379292 Jden_0095 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160074.1 104411 R 471856 CDS YP_003160075.1 256831348 8379293 105198..107099 1 NC_013174.1 hypothetical protein 107099 8379293 Jden_0096 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160075.1 105198 D 471856 CDS YP_003160076.1 256831349 8379294 107258..109636 1 NC_013174.1 PFAM: ABC transporter related; KEGG: scl:sce6315 excinuclease ABC subunit A; ABC transporter 109636 8379294 Jden_0097 Jonesia denitrificans DSM 20603 ABC transporter YP_003160076.1 107258 D 471856 CDS YP_003160077.1 256831350 8379295 109663..110499 1 NC_013174.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pna:Pnap_0622 NmrA family protein; NmrA family protein 110499 8379295 Jden_0098 Jonesia denitrificans DSM 20603 NmrA family protein YP_003160077.1 109663 D 471856 CDS YP_003160078.1 256831351 8379296 complement(110522..110770) 1 NC_013174.1 hypothetical protein 110770 8379296 Jden_0099 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160078.1 110522 R 471856 CDS YP_003160079.1 256831352 8379297 complement(110857..111903) 1 NC_013174.1 KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; transcriptional regulator, LacI family 111903 8379297 Jden_0100 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160079.1 110857 R 471856 CDS YP_003160080.1 256831353 8379298 112170..113486 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter; K10188 lactose/L- arabinose transport system substrate-binding protein; extracellular solute-binding protein 113486 8379298 Jden_0101 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160080.1 112170 D 471856 CDS YP_003160081.1 256831354 8379299 113644..114576 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_2714 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 114576 8379299 Jden_0102 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160081.1 113644 D 471856 CDS YP_003160082.1 256831355 8379300 114576..115478 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smt:Smal_2681 monosaccharide-transporting ATPase; binding-protein-dependent transport system inner membrane protein 115478 8379300 Jden_0103 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160082.1 114576 D 471856 CDS YP_003160083.1 256831356 8379301 115545..117299 1 NC_013174.1 PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: similar to Ect3 CG3132-PA; beta-galactosidase 117299 8379301 Jden_0104 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003160083.1 115545 D 471856 CDS YP_003160084.1 256831357 8379302 complement(117296..118309) 1 NC_013174.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pzu:PHZ_c1983 alcohol dehydrogenase, zinc- containing; Alcohol dehydrogenase zinc-binding domain-containing protein 118309 8379302 Jden_0105 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase zinc-binding domain-containing protein YP_003160084.1 117296 R 471856 CDS YP_003160085.1 256831358 8379303 118434..119012 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_06413 transcriptional regulator; TetR family transcriptional regulator 119012 8379303 Jden_0106 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160085.1 118434 D 471856 CDS YP_003160086.1 256831359 8381718 119555..120526 1 NC_013174.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: cvi:CV_2446 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-ketoacyl-ACP synthase I 120526 8381718 Jden_0108 Jonesia denitrificans DSM 20603 3-ketoacyl-ACP synthase I YP_003160086.1 119555 D 471856 CDS YP_003160087.1 256831360 8379305 120520..121251 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_2961 ABC transporter related; ABC transporter 121251 8379305 Jden_0109 Jonesia denitrificans DSM 20603 ABC transporter YP_003160087.1 120520 D 471856 CDS YP_003160088.1 256831361 8379306 121248..123527 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 hypothetical protein; hypothetical protein 123527 8379306 Jden_0110 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160088.1 121248 D 471856 CDS YP_003160089.1 256831362 8379307 complement(123511..124134) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator; TetR family transcriptional regulator 124134 8379307 Jden_0111 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160089.1 123511 R 471856 CDS YP_003160090.1 256831363 8379308 complement(124205..125095) 1 NC_013174.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bsu:BSU40670 hypothetical protein; LysR family transcriptional regulator 125095 8379308 Jden_0112 Jonesia denitrificans DSM 20603 LysR family transcriptional regulator YP_003160090.1 124205 R 471856 CDS YP_003160091.1 256831364 8379309 125200..126498 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5298 major facilitator transporter; major facilitator superfamily protein 126498 8379309 Jden_0113 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160091.1 125200 D 471856 CDS YP_003160092.1 256831365 8379310 complement(126686..127732) 1 NC_013174.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bsu:BSU27010 NADP-dependent alcohol dehydrogenase; Alcohol dehydrogenase GroES domain-containing protein 127732 8379310 Jden_0114 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase GroES domain-containing protein YP_003160092.1 126686 R 471856 CDS YP_003160093.1 256831366 8379311 127928..128836 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A5478 ABC transporter, ATP- binding protein; ABC transporter 128836 8379311 Jden_0115 Jonesia denitrificans DSM 20603 ABC transporter YP_003160093.1 127928 D 471856 CDS YP_003160094.1 256831367 8379312 128839..129582 1 NC_013174.1 PFAM: ABC-2 type transporter; KEGG: bca:BCE_5484 ABC transporter, permease protein, putative; ABC transporter 129582 8379312 Jden_0116 Jonesia denitrificans DSM 20603 ABC transporter YP_003160094.1 128839 D 471856 CDS YP_003160095.1 256831368 8379313 129594..130742 1 NC_013174.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: ccs:CCNA_01207 two-component sensor histidine kinase; histidine kinase dimerisation and phosphoacceptor region 130742 8379313 Jden_0117 Jonesia denitrificans DSM 20603 histidine kinase dimerisation and phosphoacceptor region YP_003160095.1 129594 D 471856 CDS YP_003160096.1 256831369 8379314 130739..131356 1 NC_013174.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sus:Acid_1272 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family 131356 8379314 Jden_0118 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003160096.1 130739 D 471856 CDS YP_003160097.1 256831370 8379315 131416..132462 1 NC_013174.1 PFAM: protein of unknown function DUF218; KEGG: bce:BC3183 hypothetical protein; hypothetical protein 132462 8379315 Jden_0119 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160097.1 131416 D 471856 CDS YP_003160098.1 256831371 8379316 132485..133189 1 NC_013174.1 PFAM: glutamine amidotransferase class-I; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase class-I; glutamine amidotransferase 133189 8379316 Jden_0120 Jonesia denitrificans DSM 20603 glutamine amidotransferase YP_003160098.1 132485 D 471856 CDS YP_003160099.1 256831372 8379317 133276..134379 1 NC_013174.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pap:PSPA7_1398 putative FMN oxidoreductase; NADH:flavin oxidoreductase 134379 8379317 Jden_0121 Jonesia denitrificans DSM 20603 NADH:flavin oxidoreductase YP_003160099.1 133276 D 471856 CDS YP_003160100.1 256831373 8379318 complement(134411..134842) 1 NC_013174.1 hypothetical protein 134842 8379318 Jden_0122 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160100.1 134411 R 471856 CDS YP_003160101.1 256831374 8379319 135018..135716 1 NC_013174.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 135716 8379319 Jden_0123 Jonesia denitrificans DSM 20603 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_003160101.1 135018 D 471856 CDS YP_003160102.1 256831375 8379320 complement(135734..136246) 1 NC_013174.1 hypothetical protein 136246 8379320 Jden_0124 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160102.1 135734 R 471856 CDS YP_003160103.1 256831376 8379321 complement(136324..136698) 1 NC_013174.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mxa:MXAN_6848 thioredoxin; thioredoxin 136698 8379321 Jden_0125 Jonesia denitrificans DSM 20603 thioredoxin YP_003160103.1 136324 R 471856 CDS YP_003160104.1 256831377 8379322 complement(136859..137725) 1 NC_013174.1 PFAM: Aldose 1-epimerase; KEGG: tbd:Tbd_2730 dihydroxyacid dehydratase; aldose 1-epimerase 137725 8379322 Jden_0126 Jonesia denitrificans DSM 20603 aldose 1-epimerase YP_003160104.1 136859 R 471856 CDS YP_003160105.1 256831378 8379323 complement(137829..140156) 1 NC_013174.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; Luciferase-like monooxygenase; KEGG: rme:Rmet_1775 FAD linked oxidase-like protein; FAD linked oxidase domain-containing protein 140156 8379323 Jden_0127 Jonesia denitrificans DSM 20603 FAD linked oxidase domain-containing protein YP_003160105.1 137829 R 471856 CDS YP_003160106.1 256831379 8379324 complement(140285..141307) 1 NC_013174.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sme:SM_b20014 putative transcriptional regulator protein; transcriptional regulator, LacI family 141307 8379324 Jden_0128 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160106.1 140285 R 471856 CDS YP_003160107.1 256831380 8379325 141465..143096 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mms:mma_2679 phosphoglycolate phosphatase; HAD-superfamily hydrolase 143096 8379325 Jden_0129 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003160107.1 141465 D 471856 CDS YP_003160108.1 256831381 8379326 143114..144025 1 NC_013174.1 hypothetical protein 144025 8379326 Jden_0130 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160108.1 143114 D 471856 CDS YP_003160109.1 256831382 8379327 144094..145851 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2240 putative ABC transporter, ATP- binding protein; ABC transporter 145851 8379327 Jden_0131 Jonesia denitrificans DSM 20603 ABC transporter YP_003160109.1 144094 D 471856 CDS YP_003160110.1 256831383 8379328 145853..146674 1 NC_013174.1 PFAM: cobalt transport protein; KEGG: bcr:BCAH187_A2710 cobalt transport protein; cobalt transport protein 146674 8379328 Jden_0132 Jonesia denitrificans DSM 20603 cobalt transport protein YP_003160110.1 145853 D 471856 CDS YP_003160111.1 256831384 8379329 146812..148107 1 NC_013174.1 hypothetical protein 148107 8379329 Jden_0133 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160111.1 146812 D 471856 CDS YP_003160112.1 256831385 8379330 148104..148871 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4515 ABC transporter related; ABC transporter 148871 8379330 Jden_0134 Jonesia denitrificans DSM 20603 ABC transporter YP_003160112.1 148104 D 471856 CDS YP_003160113.1 256831386 8379331 148868..149509 1 NC_013174.1 hypothetical protein 149509 8379331 Jden_0135 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160113.1 148868 D 471856 CDS YP_003160114.1 256831387 8379332 149637..149936 1 NC_013174.1 hypothetical protein 149936 8379332 Jden_0136 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160114.1 149637 D 471856 CDS YP_003160115.1 256831388 8379333 149948..150337 1 NC_013174.1 KEGG: bja:blr5887 hypothetical protein; hypothetical protein 150337 8379333 Jden_0137 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160115.1 149948 D 471856 CDS YP_003160116.1 256831389 8379334 150334..151554 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 151554 8379334 Jden_0138 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160116.1 150334 D 471856 CDS YP_003160117.1 256831390 8379335 151613..152089 1 NC_013174.1 hypothetical protein 152089 8379335 Jden_0139 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160117.1 151613 D 471856 CDS YP_003160118.1 256831391 8379336 152312..152584 1 NC_013174.1 hypothetical protein 152584 8379336 Jden_0140 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160118.1 152312 D 471856 CDS YP_003160119.1 256831392 8379337 152633..153283 1 NC_013174.1 PFAM: polysaccharide deacetylase; KEGG: rlt:Rleg2_5037 polysaccharide deacetylase; polysaccharide deacetylase 153283 8379337 Jden_0141 Jonesia denitrificans DSM 20603 polysaccharide deacetylase YP_003160119.1 152633 D 471856 CDS YP_003160120.1 256831393 8379338 complement(153308..154969) 1 NC_013174.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: FAD binding domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 154969 8379338 Jden_0142 Jonesia denitrificans DSM 20603 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003160120.1 153308 R 471856 CDS YP_003160121.1 256831394 8379339 155140..155610 1 NC_013174.1 KEGG: bcb:BCB4264_A1832 putative multidrug resistance protein; hypothetical protein 155610 8379339 Jden_0143 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160121.1 155140 D 471856 CDS YP_003160122.1 256831395 8379340 155594..156172 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: bja:bll2216 transcriptional regulatory protein; TetR family transcriptional regulator 156172 8379340 Jden_0144 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160122.1 155594 D 471856 CDS YP_003160123.1 256831396 8379341 complement(156223..157026) 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pmy:Pmen_1266 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 157026 8379341 Jden_0145 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003160123.1 156223 R 471856 CDS YP_003160124.1 256831397 8379342 157266..158522 1 NC_013174.1 PFAM: amidinotransferase; KEGG: mlo:mll6733 arginine deiminase; Arginine deiminase 158522 8379342 Jden_0146 Jonesia denitrificans DSM 20603 Arginine deiminase YP_003160124.1 157266 D 471856 CDS YP_003160125.1 256831398 8379343 158623..158979 1 NC_013174.1 hypothetical protein 158979 8379343 Jden_0147 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160125.1 158623 D 471856 CDS YP_003160126.1 256831399 8379344 158988..160253 1 NC_013174.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: gme:Gmet_1153 hypothetical protein; hypothetical protein 160253 8379344 Jden_0148 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160126.1 158988 D 471856 CDS YP_003160127.1 256831400 8379345 complement(160244..161395) 1 NC_013174.1 KEGG: maq:Maqu_1895 cytochrome P450; cytochrome P450 161395 8379345 Jden_0149 Jonesia denitrificans DSM 20603 cytochrome P450 YP_003160127.1 160244 R 471856 CDS YP_003160128.1 256831401 8379346 complement(161392..164250) 1 NC_013174.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: bte:BTH_II0944 mulitcopper oxidase domain- containing protein; nitrite reductase 164250 8379346 Jden_0150 Jonesia denitrificans DSM 20603 nitrite reductase YP_003160128.1 161392 R 471856 CDS YP_003160129.1 256831402 8379347 complement(164247..165341) 1 NC_013174.1 KEGG: mno:Mnod_2108 hypothetical protein; hypothetical protein 165341 8379347 Jden_0151 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160129.1 164247 R 471856 CDS YP_003160130.1 256831403 8379348 complement(165338..166138) 1 NC_013174.1 KEGG: bcy:Bcer98_2973 putative transcriptional regulator; putative transcriptional regulator 166138 8379348 Jden_0152 Jonesia denitrificans DSM 20603 putative transcriptional regulator YP_003160130.1 165338 R 471856 CDS YP_003160131.1 256831404 8379349 166374..166673 1 NC_013174.1 KEGG: ret:RHE_PF00520 hypothetical protein; hypothetical protein 166673 8379349 Jden_0153 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160131.1 166374 D 471856 CDS YP_003160132.1 256831405 8379350 complement(166822..167133) 1 NC_013174.1 PFAM: protein of unknown function DUF156; KEGG: sat:SYN_00719 putative cytoplasmic protein; hypothetical protein 167133 8379350 Jden_0154 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160132.1 166822 R 471856 CDS YP_003160133.1 256831406 8379351 167286..169013 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: dal:Dalk_0198 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 169013 8379351 Jden_0155 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003160133.1 167286 D 471856 CDS YP_003160134.1 256831407 8379352 169091..169270 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 169270 8379352 Jden_0156 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160134.1 169091 D 471856 CDS YP_003160135.1 256831408 8379353 169344..170018 1 NC_013174.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: bur:Bcep18194_A6105 3-methyladenine DNA glycosylase; DNA-3-methyladenine glycosylase 170018 8379353 Jden_0157 Jonesia denitrificans DSM 20603 DNA-3-methyladenine glycosylase YP_003160135.1 169344 D 471856 CDS YP_003160136.1 256831409 8379354 complement(170037..170915) 1 NC_013174.1 TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: smt:Smal_1175 transcriptional regulator, LysR family; LysR family transcriptional regulator 170915 8379354 Jden_0158 Jonesia denitrificans DSM 20603 LysR family transcriptional regulator YP_003160136.1 170037 R 471856 CDS YP_003160137.1 256831410 8379355 170946..171776 1 NC_013174.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dsh:Dshi_0712 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA 171776 8379355 Jden_0159 Jonesia denitrificans DSM 20603 lysine exporter protein LysE/YggA YP_003160137.1 170946 D 471856 CDS YP_003160138.1 256831411 8379356 complement(171858..172535) 1 NC_013174.1 KEGG: bra:BRADO6923 hypothetical protein; hypothetical protein 172535 8379356 Jden_0160 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160138.1 171858 R 471856 CDS YP_003160139.1 256831412 8379357 172853..173884 1 NC_013174.1 hypothetical protein 173884 8379357 Jden_0161 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160139.1 172853 D 471856 CDS YP_003160140.1 256831413 8381719 complement(174441..175340) 1 NC_013174.1 KEGG: mucin-associated surface protein (MASP); mucin-associated surface protein 175340 8381719 Jden_0163 Jonesia denitrificans DSM 20603 mucin-associated surface protein YP_003160140.1 174441 R 471856 CDS YP_003160141.1 256831414 8379359 175766..176305 1 NC_013174.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bba:Bd0177 peptidyl-prolyl cis-trans isomerase; Peptidylprolyl isomerase 176305 8379359 Jden_0164 Jonesia denitrificans DSM 20603 Peptidylprolyl isomerase YP_003160141.1 175766 D 471856 CDS YP_003160142.1 256831415 8379360 176398..177276 1 NC_013174.1 PFAM: Rhomboid family protein; KEGG: aba:Acid345_1881 rhomboid-like protein; rhomboid family protein 177276 8379360 Jden_0165 Jonesia denitrificans DSM 20603 rhomboid family protein YP_003160142.1 176398 D 471856 CDS YP_003160143.1 256831416 8379361 complement(177308..177571) 1 NC_013174.1 PFAM: protein of unknown function UPF0233; hypothetical protein 177571 8379361 Jden_0166 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160143.1 177308 R 471856 CDS YP_003160144.1 256831417 8379362 177704..178465 1 NC_013174.1 PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein 178465 8379362 Jden_0167 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160144.1 177704 D 471856 CDS YP_003160145.1 256831418 8379363 178582..179217 1 NC_013174.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: eli:ELI_06505 anthranilate/para-aminobenzoate synthase component II; glutamine amidotransferase of anthranilate synthase 179217 8379363 Jden_0168 Jonesia denitrificans DSM 20603 glutamine amidotransferase of anthranilate synthase YP_003160145.1 178582 D 471856 CDS YP_003160146.1 256831419 8379364 179261..179461 1 NC_013174.1 hypothetical protein 179461 8379364 Jden_0169 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160146.1 179261 D 471856 CDS YP_003160147.1 256831420 8379365 complement(179667..181712) 1 NC_013174.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase; serine/threonine protein kinase with PASTA sensor(s) 181712 8379365 Jden_0170 Jonesia denitrificans DSM 20603 serine/threonine protein kinase with PASTA sensor(s) YP_003160147.1 179667 R 471856 CDS YP_003160148.1 256831421 8379366 complement(181706..183433) 1 NC_013174.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bcy:Bcer98_2514 protein kinase; serine/threonine protein kinase 183433 8379366 Jden_0171 Jonesia denitrificans DSM 20603 serine/threonine protein kinase YP_003160148.1 181706 R 471856 CDS YP_003160149.1 256831422 8379367 complement(183430..184881) 1 NC_013174.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sat:SYN_00551 cell elongation specific D,D- transpeptidase; peptidoglycan glycosyltransferase 184881 8379367 Jden_0172 Jonesia denitrificans DSM 20603 peptidoglycan glycosyltransferase YP_003160149.1 183430 R 471856 CDS YP_003160150.1 256831423 8379368 complement(184878..186569) 1 NC_013174.1 PFAM: cell cycle protein; KEGG: gbm:Gbem_0490 cell division protein FtsW; cell cycle protein 186569 8379368 Jden_0173 Jonesia denitrificans DSM 20603 cell cycle protein YP_003160150.1 184878 R 471856 CDS YP_003160151.1 256831424 8379369 complement(186573..188075) 1 NC_013174.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: scl:sce6484 phosphoprotein phosphatase; protein serine/threonine phosphatase 188075 8379369 Jden_0174 Jonesia denitrificans DSM 20603 protein serine/threonine phosphatase YP_003160151.1 186573 R 471856 CDS YP_003160152.1 256831425 8379370 complement(188080..188538) 1 NC_013174.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: afw:Anae109_3399 sigma-54 dependent trancsriptional regulator; FHA domain-containing protein 188538 8379370 Jden_0175 Jonesia denitrificans DSM 20603 FHA domain-containing protein YP_003160152.1 188080 R 471856 CDS YP_003160153.1 256831426 8379371 complement(188563..189279) 1 NC_013174.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ank:AnaeK_2044 FHA domain containing protein; FHA domain-containing protein 189279 8379371 Jden_0176 Jonesia denitrificans DSM 20603 FHA domain-containing protein YP_003160153.1 188563 R 471856 CDS YP_003160154.1 256831427 8381720 189591..191087 1 NC_013174.1 hypothetical protein 191087 8381720 Jden_0177 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160154.1 189591 D 471856 CDS YP_003160155.1 256831428 8379373 191101..191958 1 NC_013174.1 hypothetical protein 191958 8379373 Jden_0178 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160155.1 191101 D 471856 CDS YP_003160156.1 256831429 8379374 192011..192538 1 NC_013174.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bvi:Bcep1808_2207 protein tyrosine phosphatase; protein tyrosine phosphatase 192538 8379374 Jden_0179 Jonesia denitrificans DSM 20603 protein tyrosine phosphatase YP_003160156.1 192011 D 471856 CDS YP_003160157.1 256831430 8379375 192541..193740 1 NC_013174.1 KEGG: mxa:MXAN_0055 hypothetical protein; hypothetical protein 193740 8379375 Jden_0180 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160157.1 192541 D 471856 CDS YP_003160158.1 256831431 8379376 193752..194918 1 NC_013174.1 PFAM: aminotransferase class I and II; KEGG: scl:sce5648 aspartate transaminase; class I and II aminotransferase 194918 8379376 Jden_0181 Jonesia denitrificans DSM 20603 class I and II aminotransferase YP_003160158.1 193752 D 471856 CDS YP_003160159.1 256831432 8379377 195203..195460 1 NC_013174.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pfo:Pfl01_3423 sensor protein; transcriptional regulator, LuxR family 195460 8379377 Jden_0182 Jonesia denitrificans DSM 20603 transcriptional regulator, LuxR family YP_003160159.1 195203 D 471856 CDS YP_003160160.1 256831433 8379378 195468..195929 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: gur:Gura_2482 NUDIX hydrolase; NUDIX hydrolase 195929 8379378 Jden_0183 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003160160.1 195468 D 471856 CDS YP_003160161.1 256831434 8379379 complement(195938..196492) 1 NC_013174.1 PFAM: NADPH-dependent FMN reductase; KEGG: ank:AnaeK_3311 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 196492 8379379 Jden_0184 Jonesia denitrificans DSM 20603 NADPH-dependent FMN reductase YP_003160161.1 195938 R 471856 CDS YP_003160162.1 256831435 8379380 complement(196636..197490) 1 NC_013174.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: glo:Glov_2906 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein TIM barrel 197490 8379380 Jden_0185 Jonesia denitrificans DSM 20603 xylose isomerase domain-containing protein TIM barrel YP_003160162.1 196636 R 471856 CDS YP_003160163.1 256831436 8379381 complement(197517..198311) 1 NC_013174.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bce:BC5413 pyridoxal kinase; phosphomethylpyrimidine kinase 198311 8379381 Jden_0186 Jonesia denitrificans DSM 20603 phosphomethylpyrimidine kinase YP_003160163.1 197517 R 471856 CDS YP_003160164.1 256831437 8379382 complement(198359..199816) 1 NC_013174.1 KEGG: cak:Caul_4086 glucan 1,4-alpha-glucosidase; glucoamylase-related glycosyl hydrolase-like protein 199816 8379382 Jden_0187 Jonesia denitrificans DSM 20603 glucoamylase-related glycosyl hydrolase-like protein YP_003160164.1 198359 R 471856 CDS YP_003160165.1 256831438 8379383 199922..202741 1 NC_013174.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tmz:Tmz1t_1159 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 202741 8379383 Jden_0188 Jonesia denitrificans DSM 20603 P-type HAD superfamily ATPase YP_003160165.1 199922 D 471856 CDS YP_003160166.1 256831439 8379384 complement(202834..205167) 1 NC_013174.1 KEGG: xfn:XfasM23_1392 5- methyltetrahydropteroyltriglutamate--homocysteine S- methyltransferase; TIGRFAM: 5- methyltetrahydropteroyltriglutamate/homocysteine S- methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 205167 8379384 Jden_0189 Jonesia denitrificans DSM 20603 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_003160166.1 202834 R 471856 CDS YP_003160167.1 256831440 8379385 complement(205279..206298) 1 NC_013174.1 PFAM: methylenetetrahydrofolate reductase; KEGG: ppd:Ppro_1089 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 206298 8379385 Jden_0190 Jonesia denitrificans DSM 20603 methylenetetrahydrofolate reductase YP_003160167.1 205279 R 471856 CDS YP_003160168.1 256831441 8379386 complement(206355..206543) 1 NC_013174.1 hypothetical protein 206543 8379386 Jden_0191 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160168.1 206355 R 471856 CDS YP_003160169.1 256831442 8379387 206654..207280 1 NC_013174.1 hypothetical protein 207280 8379387 Jden_0192 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160169.1 206654 D 471856 CDS YP_003160170.1 256831443 8379388 207362..209251 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bur:Bcep18194_B1962 ABC efflux pump, fused ATPase and inner membrane subunits; ABC transporter 209251 8379388 Jden_0193 Jonesia denitrificans DSM 20603 ABC transporter YP_003160170.1 207362 D 471856 CDS YP_003160171.1 256831444 8379389 209248..210951 1 NC_013174.1 KEGG: bch:Bcen2424_4081 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 210951 8379389 Jden_0194 Jonesia denitrificans DSM 20603 cysteine ABC transporter ATP-binding protein/permease YP_003160171.1 209248 D 471856 CDS YP_003160172.1 256831445 8379390 211098..211271 1 NC_013174.1 PFAM: CsbD family protein; KEGG: sme:SMa2071 hypothetical protein; CsbD family protein 211271 8379390 Jden_0195 Jonesia denitrificans DSM 20603 CsbD family protein YP_003160172.1 211098 D 471856 CDS YP_003160173.1 256831446 8379391 complement(211307..212905) 1 NC_013174.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3575 major facilitator transporter; EmrB/QacA subfamily drug resistance transporter 212905 8379391 Jden_0196 Jonesia denitrificans DSM 20603 EmrB/QacA subfamily drug resistance transporter YP_003160173.1 211307 R 471856 CDS YP_003160174.1 256831447 8379392 complement(212915..214018) 1 NC_013174.1 KEGG: bam:Bamb_1824 ATPase-like protein; ATPase-like protein 214018 8379392 Jden_0197 Jonesia denitrificans DSM 20603 ATPase-like protein YP_003160174.1 212915 R 471856 CDS YP_003160175.1 256831448 8379393 214156..216405 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: scl:sce2601 Beta-glucosidase; glycoside hydrolase family 3 216405 8379393 Jden_0198 Jonesia denitrificans DSM 20603 glycoside hydrolase family 3 YP_003160175.1 214156 D 471856 CDS YP_003160176.1 256831449 8379394 216599..217102 1 NC_013174.1 KEGG: bcy:Bcer98_1417 hypothetical protein; hypothetical protein 217102 8379394 Jden_0199 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160176.1 216599 D 471856 CDS YP_003160177.1 256831450 8379395 complement(217203..218411) 1 NC_013174.1 PFAM: Methionine synthase vitamin-B12 independent; KEGG: dsh:Dshi_2235 methionine synthase vitamin-B12 independent; Methionine synthase vitamin-B12 independent 218411 8379395 Jden_0200 Jonesia denitrificans DSM 20603 Methionine synthase vitamin-B12 independent YP_003160177.1 217203 R 471856 CDS YP_003160178.1 256831451 8379396 complement(218485..218970) 1 NC_013174.1 hypothetical protein 218970 8379396 Jden_0201 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160178.1 218485 R 471856 CDS YP_003160179.1 256831452 8379397 219272..220030 1 NC_013174.1 PFAM: protein of unknown function DUF540; KEGG: vha:VIBHAR_01310 putative sulfate transport protein CysZ; hypothetical protein 220030 8379397 Jden_0202 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160179.1 219272 D 471856 CDS YP_003160180.1 256831453 8379398 complement(220027..220440) 1 NC_013174.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pzu:PHZ_c1600 hypothetical protein; antibiotic biosynthesis monooxygenase 220440 8379398 Jden_0203 Jonesia denitrificans DSM 20603 antibiotic biosynthesis monooxygenase YP_003160180.1 220027 R 471856 CDS YP_003160181.1 256831454 8379399 220462..221397 1 NC_013174.1 PFAM: HpcH/HpaI aldolase; KEGG: bvi:Bcep1808_5394 HpcH/HpaI aldolase; HpcH/HpaI aldolase 221397 8379399 Jden_0204 Jonesia denitrificans DSM 20603 HpcH/HpaI aldolase YP_003160181.1 220462 D 471856 CDS YP_003160182.1 256831455 8379400 221405..221764 1 NC_013174.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: csa:Csal_2488 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 221764 8379400 Jden_0205 Jonesia denitrificans DSM 20603 antibiotic biosynthesis monooxygenase YP_003160182.1 221405 D 471856 CDS YP_003160183.1 256831456 8379401 221862..222074 1 NC_013174.1 hypothetical protein 222074 8379401 Jden_0206 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160183.1 221862 D 471856 CDS YP_003160184.1 256831457 8379402 222160..222948 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: afw:Anae109_1109 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 222948 8379402 Jden_0207 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003160184.1 222160 D 471856 CDS YP_003160185.1 256831458 8379403 223085..224086 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: sme:SM_b20100 putative dehydrogenase protein; luciferase-like monooxygenase 224086 8379403 Jden_0208 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003160185.1 223085 D 471856 CDS YP_003160186.1 256831459 8379404 complement(224179..224781) 1 NC_013174.1 KEGG: Hypothetical protein CBG09473; hypothetical protein 224781 8379404 Jden_0209 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160186.1 224179 R 471856 CDS YP_003160187.1 256831460 8379405 complement(224854..225396) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 225396 8379405 Jden_0210 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160187.1 224854 R 471856 CDS YP_003160188.1 256831461 8379406 complement(225393..225608) 1 NC_013174.1 hypothetical protein 225608 8379406 Jden_0211 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160188.1 225393 R 471856 CDS YP_003160189.1 256831462 8379407 225607..226407 1 NC_013174.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 226407 8379407 Jden_0212 Jonesia denitrificans DSM 20603 membrane-bound metal-dependent hydrolase YP_003160189.1 225607 D 471856 CDS YP_003160190.1 256831463 8379408 complement(226351..226539) 1 NC_013174.1 hypothetical protein 226539 8379408 Jden_0213 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160190.1 226351 R 471856 CDS YP_003160191.1 256831464 8379409 complement(226552..228228) 1 NC_013174.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpb:RPB_0883 putative FAD-binding dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 228228 8379409 Jden_0214 Jonesia denitrificans DSM 20603 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003160191.1 226552 R 471856 CDS YP_003160192.1 256831465 8379410 complement(228409..230772) 1 NC_013174.1 KEGG: cja:CJA_3559 rhamnogalacturonan lyase, rgl11A; hypothetical protein 230772 8379410 Jden_0215 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160192.1 228409 R 471856 CDS YP_003160193.1 256831466 8379411 231803..232291 1 NC_013174.1 hypothetical protein 232291 8379411 Jden_0216 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160193.1 231803 D 471856 CDS YP_003160194.1 256831467 8379412 232310..233188 1 NC_013174.1 KEGG: aba:Acid345_0308 secretion protein HlyD; hypothetical protein 233188 8379412 Jden_0217 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160194.1 232310 D 471856 CDS YP_003160195.1 256831468 8379413 233185..233880 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1760 lipoprotein releasing system, ATP-binding protein; ABC transporter 233880 8379413 Jden_0218 Jonesia denitrificans DSM 20603 ABC transporter YP_003160195.1 233185 D 471856 CDS YP_003160196.1 256831469 8379414 233877..235070 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: sgl:SG1459 putative ABC transporter ATP- binding component; hypothetical protein 235070 8379414 Jden_0219 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160196.1 233877 D 471856 CDS YP_003160197.1 256831470 8379415 complement(235042..235215) 1 NC_013174.1 hypothetical protein 235215 8379415 Jden_0220 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160197.1 235042 R 471856 CDS YP_003160198.1 256831471 8379416 235636..236397 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c1068 ABC transporter, ATP-binding protein; ABC transporter 236397 8379416 Jden_0221 Jonesia denitrificans DSM 20603 ABC transporter YP_003160198.1 235636 D 471856 CDS YP_003160199.1 256831472 8379417 236390..237655 1 NC_013174.1 KEGG: bmj:BMULJ_02976 thiol:disulfide interchange protein; hypothetical protein 237655 8379417 Jden_0222 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160199.1 236390 D 471856 CDS YP_003160200.1 256831473 8379418 237652..238293 1 NC_013174.1 hypothetical protein 238293 8379418 Jden_0223 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160200.1 237652 D 471856 CDS YP_003160201.1 256831474 8379419 238403..238726 1 NC_013174.1 hypothetical protein 238726 8379419 Jden_0224 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160201.1 238403 D 471856 CDS YP_003160202.1 256831475 8379420 complement(238809..240020) 1 NC_013174.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bha:BH3008 hypothetical protein; amidohydrolase 240020 8379420 Jden_0225 Jonesia denitrificans DSM 20603 amidohydrolase YP_003160202.1 238809 R 471856 CDS YP_003160203.1 256831476 8379421 240110..241258 1 NC_013174.1 KEGG: aba:Acid345_2780 N-acetylglucosamine 6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 241258 8379421 Jden_0226 Jonesia denitrificans DSM 20603 N-acetylglucosamine-6-phosphate deacetylase YP_003160203.1 240110 D 471856 CDS YP_003160204.1 256831477 8379422 241823..242749 1 NC_013174.1 KEGG: kinesin K39; hypothetical protein 242749 8379422 Jden_0227 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160204.1 241823 D 471856 CDS YP_003160205.1 256831478 8379423 242770..243744 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_0602 ABC transporter related; ABC transporter 243744 8379423 Jden_0228 Jonesia denitrificans DSM 20603 ABC transporter YP_003160205.1 242770 D 471856 CDS YP_003160206.1 256831479 8379424 243741..244493 1 NC_013174.1 KEGG: pfl:PFL_2798 ABC transporter, permease protein, putative; hypothetical protein 244493 8379424 Jden_0229 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160206.1 243741 D 471856 CDS YP_003160207.1 256831480 8379425 244493..245281 1 NC_013174.1 PFAM: ABC-2 type transporter; KEGG: bac:BamMC406_1511 ABC transporter; ABC transporter 245281 8379425 Jden_0230 Jonesia denitrificans DSM 20603 ABC transporter YP_003160207.1 244493 D 471856 CDS YP_003160208.1 256831481 8379426 245278..246303 1 NC_013174.1 PFAM: GTPase EngC; KEGG: cak:Caul_1373 ribosome small subunit- dependent GTPase A; GTPase EngC 246303 8379426 Jden_0231 Jonesia denitrificans DSM 20603 GTPase EngC YP_003160208.1 245278 D 471856 CDS YP_003160209.1 256831482 8379427 complement(246333..247772) 1 NC_013174.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: sde:Sde_3037 glycosyl hydrolase; beta-N-acetylhexosaminidase 247772 8379427 Jden_0232 Jonesia denitrificans DSM 20603 beta-N-acetylhexosaminidase YP_003160209.1 246333 R 471856 CDS YP_003160210.1 256831483 8379428 247865..249022 1 NC_013174.1 PFAM: ROK family protein; KEGG: bha:BH2758 transcriptional repressor of the xylose operon; ROK family protein 249022 8379428 Jden_0233 Jonesia denitrificans DSM 20603 ROK family protein YP_003160210.1 247865 D 471856 CDS YP_003160211.1 256831484 8379429 249069..250307 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein; extracellular solute-binding protein 250307 8379429 Jden_0234 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160211.1 249069 D 471856 CDS YP_003160212.1 256831485 8379430 250394..251386 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2296 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 251386 8379430 Jden_0235 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160212.1 250394 D 471856 CDS YP_003160213.1 256831486 8379431 251383..252198 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_3667 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 252198 8379431 Jden_0236 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160213.1 251383 D 471856 CDS YP_003160214.1 256831487 8379432 252213..252995 1 NC_013174.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rsq:Rsph17025_4131 hypothetical protein; glucosamine-6-phosphate isomerase 252995 8379432 Jden_0237 Jonesia denitrificans DSM 20603 glucosamine-6-phosphate isomerase YP_003160214.1 252213 D 471856 CDS YP_003160215.1 256831488 8379433 252980..253951 1 NC_013174.1 PFAM: ROK family protein; KEGG: sfu:Sfum_1953 ROK family protein; ROK family protein 253951 8379433 Jden_0238 Jonesia denitrificans DSM 20603 ROK family protein YP_003160215.1 252980 D 471856 CDS YP_003160216.1 256831489 8379434 254049..254411 1 NC_013174.1 PFAM: protein of unknown function DUF488; KEGG: abm:ABSDF0629 hypothetical protein; hypothetical protein 254411 8379434 Jden_0239 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160216.1 254049 D 471856 CDS YP_003160217.1 256831490 8379435 complement(254420..258727) 1 NC_013174.1 KEGG: eca:ECA2006 ATP-dependent RNA helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase; ATP-dependent helicase HrpA 258727 8379435 Jden_0240 Jonesia denitrificans DSM 20603 ATP-dependent helicase HrpA YP_003160217.1 254420 R 471856 CDS YP_003160218.1 256831491 8379436 258903..260558 1 NC_013174.1 PFAM: extracellular solute-binding protein family 5; KEGG: peptide ABC transporter; family 5 extracellular solute-binding protein 260558 8379436 Jden_0241 Jonesia denitrificans DSM 20603 family 5 extracellular solute-binding protein YP_003160218.1 258903 D 471856 CDS YP_003160219.1 256831492 8379437 260564..261514 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter; K02033 peptide/nickel transport system permease protein; binding-protein-dependent transport system inner membrane protein 261514 8379437 Jden_0242 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160219.1 260564 D 471856 CDS YP_003160220.1 256831493 8379438 261507..262313 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppC; ABC transporter membrane spanning protein (dipeptide); K02034 peptide/nickel transport system permease protein; binding-protein-dependent transport system inner membrane protein 262313 8379438 Jden_0243 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160220.1 261507 D 471856 CDS YP_003160221.1 256831494 8379439 262310..263905 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcj:BCAS0451 ABC transporter ATP-binding protein; ABC transporter 263905 8379439 Jden_0244 Jonesia denitrificans DSM 20603 ABC transporter YP_003160221.1 262310 D 471856 CDS YP_003160222.1 256831495 8379440 264021..264674 1 NC_013174.1 PFAM: cyclase/dehydrase; KEGG: afw:Anae109_1003 cyclase/dehydrase; cyclase/dehydrase 264674 8379440 Jden_0245 Jonesia denitrificans DSM 20603 cyclase/dehydrase YP_003160222.1 264021 D 471856 CDS YP_003160223.1 256831496 8379441 complement(264730..265053) 1 NC_013174.1 hypothetical protein 265053 8379441 Jden_0246 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160223.1 264730 R 471856 CDS YP_003160224.1 256831497 8379442 complement(265054..265443) 1 NC_013174.1 hypothetical protein 265443 8379442 Jden_0247 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160224.1 265054 R 471856 CDS YP_003160225.1 256831498 8379443 265526..266431 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bvi:Bcep1808_5892 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 266431 8379443 Jden_0248 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003160225.1 265526 D 471856 CDS YP_003160226.1 256831499 8379444 266488..267024 1 NC_013174.1 hypothetical protein 267024 8379444 Jden_0249 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160226.1 266488 D 471856 CDS YP_003160227.1 256831500 8379445 complement(267018..267467) 1 NC_013174.1 KEGG: ent:Ent638_1237 cell envelope integrity inner membrane protein TolA; hypothetical protein 267467 8379445 Jden_0250 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160227.1 267018 R 471856 CDS YP_003160228.1 256831501 8379446 267634..269208 1 NC_013174.1 PFAM: sodium:neurotransmitter symporter; KEGG: pmu:PM0718 hypothetical protein; sodium:neurotransmitter symporter 269208 8379446 Jden_0251 Jonesia denitrificans DSM 20603 sodium:neurotransmitter symporter YP_003160228.1 267634 D 471856 CDS YP_003160229.1 256831502 8379447 269208..269378 1 NC_013174.1 KEGG: aci:ACIAD3640 hypothetical protein; hypothetical protein 269378 8379447 Jden_0252 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160229.1 269208 D 471856 CDS YP_003160230.1 256831503 8379448 complement(269424..269795) 1 NC_013174.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hypothetical protein; MazG nucleotide pyrophosphohydrolase 269795 8379448 Jden_0253 Jonesia denitrificans DSM 20603 MazG nucleotide pyrophosphohydrolase YP_003160230.1 269424 R 471856 CDS YP_003160231.1 256831504 8379449 269842..271047 1 NC_013174.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: ank:AnaeK_0746 protein of unknown function DUF125 transmembrane; hypothetical protein 271047 8379449 Jden_0254 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160231.1 269842 D 471856 CDS YP_003160232.1 256831505 8379450 complement(271117..272040) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 272040 8379450 Jden_0255 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160232.1 271117 R 471856 CDS YP_003160233.1 256831506 8379451 complement(272115..273461) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA2269 hypothetical protein; major facilitator superfamily protein 273461 8379451 Jden_0256 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160233.1 272115 R 471856 CDS YP_003160234.1 256831507 8379452 273541..273882 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c0779 acetyltransferase; N-acetyltransferase GCN5 273882 8379452 Jden_0257 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160234.1 273541 D 471856 CDS YP_003160235.1 256831508 8379453 complement(274238..275893) 1 NC_013174.1 TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: ccs:CCNA_00083 phosphoglucomutase/phosphomannomutase; phosphoglucomutase 275893 8379453 Jden_0258 Jonesia denitrificans DSM 20603 phosphoglucomutase YP_003160235.1 274238 R 471856 CDS YP_003160236.1 256831509 8379454 275993..276817 1 NC_013174.1 hypothetical protein 276817 8379454 Jden_0259 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160236.1 275993 D 471856 CDS YP_003160237.1 256831510 8379455 276965..277786 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: bha:BH2769 dolichyl-phosphate mannose synthase; family 2 glycosyl transferase 277786 8379455 Jden_0260 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003160237.1 276965 D 471856 CDS YP_003160238.1 256831511 8379456 complement(277783..278628) 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: alpha/beta hydrolase fold protein protein; alpha/beta hydrolase fold protein 278628 8379456 Jden_0261 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003160238.1 277783 R 471856 CDS YP_003160239.1 256831512 8379457 complement(278650..278931) 1 NC_013174.1 KEGG: dsh:Dshi_3850 hypothetical protein; hypothetical protein 278931 8379457 Jden_0262 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160239.1 278650 R 471856 CDS YP_003160240.1 256831513 8379458 complement(278993..281347) 1 NC_013174.1 KEGG: bha:BH0549 hypothetical protein; hypothetical protein 281347 8379458 Jden_0263 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160240.1 278993 R 471856 CDS YP_003160241.1 256831514 8379459 complement(281372..282592) 1 NC_013174.1 PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: mex:Mext_1567 putative lipid kinase; diacylglycerol kinase catalytic subunit 282592 8379459 Jden_0264 Jonesia denitrificans DSM 20603 diacylglycerol kinase catalytic subunit YP_003160241.1 281372 R 471856 CDS YP_003160242.1 256831515 8379460 282648..283928 1 NC_013174.1 KEGG: gme:Gmet_3528 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase 283928 8379460 Jden_0265 Jonesia denitrificans DSM 20603 seryl-tRNA synthetase YP_003160242.1 282648 D 471856 CDS YP_003160243.1 256831516 8379461 283925..284725 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: eca:ECA4428 sugar phosphatase; HAD-superfamily hydrolase 284725 8379461 Jden_0266 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003160243.1 283925 D 471856 CDS YP_003160244.1 256831517 8379462 285051..286439 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_C_1045 alpha-glucosides-binding periplasmic protein AglE precursor; extracellular solute-binding protein 286439 8379462 Jden_0267 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160244.1 285051 D 471856 CDS YP_003160245.1 256831518 8379463 286608..287612 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2911 ABC alpha-glucoside transporter inner membrane binding protein; binding-protein-dependent transport system inner membrane protein 287612 8379463 Jden_0268 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160245.1 286608 D 471856 CDS YP_003160246.1 256831519 8379464 287609..288532 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0294 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 288532 8379464 Jden_0269 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160246.1 287609 D 471856 CDS YP_003160247.1 256831520 8379465 complement(288542..289504) 1 NC_013174.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mpo:Mpop_1697 NAD(P)H quinone oxidoreductase, PIG3 family; NAD(P)H quinone oxidoreductase 289504 8379465 Jden_0270 Jonesia denitrificans DSM 20603 NAD(P)H quinone oxidoreductase YP_003160247.1 288542 R 471856 CDS YP_003160248.1 256831521 8381721 289744..293952 1 NC_013174.1 PFAM: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: ATPase, AAA family protein; putative sensor 293952 8381721 Jden_0272 Jonesia denitrificans DSM 20603 putative sensor YP_003160248.1 289744 D 471856 CDS YP_003160249.1 256831522 8379467 293993..294442 1 NC_013174.1 PFAM: Roadblock/LC7 family protein; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 294442 8379467 Jden_0273 Jonesia denitrificans DSM 20603 Roadblock/LC7 family protein YP_003160249.1 293993 D 471856 CDS YP_003160250.1 256831523 8379468 294456..294863 1 NC_013174.1 PFAM: protein of unknown function DUF742; hypothetical protein 294863 8379468 Jden_0274 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160250.1 294456 D 471856 CDS YP_003160251.1 256831524 8379469 294844..295461 1 NC_013174.1 PFAM: protein of unknown function ATP binding; KEGG: lch:Lcho_0656 small GTP-binding protein; hypothetical protein 295461 8379469 Jden_0275 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160251.1 294844 D 471856 CDS YP_003160252.1 256831525 8381722 295763..296791 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family 296791 8381722 Jden_0276 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160252.1 295763 D 471856 CDS YP_003160253.1 256831526 8379471 296788..298323 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related; ABC transporter 298323 8379471 Jden_0277 Jonesia denitrificans DSM 20603 ABC transporter YP_003160253.1 296788 D 471856 CDS YP_003160254.1 256831527 8379472 298643..299629 1 NC_013174.1 KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 299629 8379472 Jden_0278 Jonesia denitrificans DSM 20603 periplasmic binding protein/LacI transcriptional regulator YP_003160254.1 298643 D 471856 CDS YP_003160255.1 256831528 8379473 299744..301324 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related; ABC transporter 301324 8379473 Jden_0279 Jonesia denitrificans DSM 20603 ABC transporter YP_003160255.1 299744 D 471856 CDS YP_003160256.1 256831529 8379474 301317..302390 1 NC_013174.1 PFAM: inner-membrane translocator; KEGG: bmj:BMULJ_05565 simple sugar transport system permease protein; monosaccharide-transporting ATPase 302390 8379474 Jden_0280 Jonesia denitrificans DSM 20603 monosaccharide-transporting ATPase YP_003160256.1 301317 D 471856 CDS YP_003160257.1 256831530 8379475 302387..303421 1 NC_013174.1 PFAM: inner-membrane translocator; KEGG: bvi:Bcep1808_6549 inner membrane ABC transporter permease protein YjfF; monosaccharide-transporting ATPase 303421 8379475 Jden_0281 Jonesia denitrificans DSM 20603 monosaccharide-transporting ATPase YP_003160257.1 302387 D 471856 CDS YP_003160258.1 256831531 8379476 complement(303545..305848) 1 NC_013174.1 KEGG: sus:Acid_6846 NHL repeat-containing protein; hypothetical protein 305848 8379476 Jden_0282 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160258.1 303545 R 471856 CDS YP_003160259.1 256831532 8379477 306012..306740 1 NC_013174.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH4010 hypothetical protein; sortase family protein 306740 8379477 Jden_0283 Jonesia denitrificans DSM 20603 sortase family protein YP_003160259.1 306012 D 471856 CDS YP_003160260.1 256831533 8379478 306740..306895 1 NC_013174.1 hypothetical protein 306895 8379478 Jden_0284 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160260.1 306740 D 471856 CDS YP_003160261.1 256831534 8379479 306909..307313 1 NC_013174.1 PFAM: protein of unknown function DUF419; KEGG: dal:Dalk_4246 protein of unknown function DUF419; hypothetical protein 307313 8379479 Jden_0285 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160261.1 306909 D 471856 CDS YP_003160262.1 256831535 8379480 307597..308919 1 NC_013174.1 PFAM: protein of unknown function DUF1212; KEGG: smd:Smed_3002 protein of unknown function DUF1212; hypothetical protein 308919 8379480 Jden_0286 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160262.1 307597 D 471856 CDS YP_003160263.1 256831536 8381723 309289..309894 1 NC_013174.1 PFAM: protein of unknown function DUF305; KEGG: hne:HNE_1481 hypothetical protein; hypothetical protein 309894 8381723 Jden_0287 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160263.1 309289 D 471856 CDS YP_003160264.1 256831537 8379482 309943..310884 1 NC_013174.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain-containing protein 310884 8379482 Jden_0288 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase GroES domain-containing protein YP_003160264.1 309943 D 471856 CDS YP_003160265.1 256831538 8379483 310923..312149 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter; major facilitator superfamily protein 312149 8379483 Jden_0289 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160265.1 310923 D 471856 CDS YP_003160266.1 256831539 8379484 complement(312141..312731) 1 NC_013174.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: pol:Bpro_1637 methylated-DNA--protein- cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 312731 8379484 Jden_0290 Jonesia denitrificans DSM 20603 methylated-DNA--protein-cysteine methyltransferase YP_003160266.1 312141 R 471856 CDS YP_003160267.1 256831540 8381724 313105..313824 1 NC_013174.1 PFAM: SNARE associated Golgi protein; KEGG: pzu:PHZ_c3071 alkaline phosphatase; hypothetical protein 313824 8381724 Jden_0291 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160267.1 313105 D 471856 CDS YP_003160268.1 256831541 8379486 complement(313832..315373) 1 NC_013174.1 PFAM: BCCT transporter; KEGG: ppw:PputW619_2676 choline/carnitine/betaine transporter; BCCT transporter 315373 8379486 Jden_0292 Jonesia denitrificans DSM 20603 BCCT transporter YP_003160268.1 313832 R 471856 CDS YP_003160269.1 256831542 8379487 complement(315381..315545) 1 NC_013174.1 hypothetical protein 315545 8379487 Jden_0293 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160269.1 315381 R 471856 CDS YP_003160270.1 256831543 8379488 315595..316236 1 NC_013174.1 hypothetical protein 316236 8379488 Jden_0294 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160270.1 315595 D 471856 CDS YP_003160271.1 256831544 8381726 complement(316986..318524) 1 NC_013174.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ank:AnaeK_0842 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 318524 8381726 Jden_0296 Jonesia denitrificans DSM 20603 ECF subfamily RNA polymerase sigma-24 subunit YP_003160271.1 316986 R 471856 CDS YP_003160272.1 256831545 8379490 318620..319570 1 NC_013174.1 PFAM: periplasmic solute binding protein; KEGG: yen:YE1900 periplasmic-binding protein; periplasmic solute binding protein 319570 8379490 Jden_0297 Jonesia denitrificans DSM 20603 periplasmic solute binding protein YP_003160272.1 318620 D 471856 CDS YP_003160273.1 256831546 8379491 319567..320352 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_0248 ABC transporter related; ABC transporter 320352 8379491 Jden_0298 Jonesia denitrificans DSM 20603 ABC transporter YP_003160273.1 319567 D 471856 CDS YP_003160274.1 256831547 8379492 320345..321244 1 NC_013174.1 PFAM: ABC-3 protein; transport system permease protein; KEGG: hit:NTHI0477 putative ABC-type chelated iron transport system, permease component; ABC transporter 321244 8379492 Jden_0299 Jonesia denitrificans DSM 20603 ABC transporter YP_003160274.1 320345 D 471856 CDS YP_003160275.1 256831548 8379493 complement(321254..321493) 1 NC_013174.1 hypothetical protein 321493 8379493 Jden_0300 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160275.1 321254 R 471856 CDS YP_003160276.1 256831549 8379494 complement(321837..322040) 1 NC_013174.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: smt:Smal_2965 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 322040 8379494 Jden_0301 Jonesia denitrificans DSM 20603 cold-shock DNA-binding domain-containing protein YP_003160276.1 321837 R 471856 CDS YP_003160277.1 256831550 8379495 complement(322236..322916) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_1217 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 322916 8379495 Jden_0302 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160277.1 322236 R 471856 CDS YP_003160278.1 256831551 8379496 323162..324505 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator transporter; major facilitator superfamily protein 324505 8379496 Jden_0303 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160278.1 323162 D 471856 CDS YP_003160279.1 256831552 8379497 complement(324546..324857) 1 NC_013174.1 hypothetical protein 324857 8379497 Jden_0304 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160279.1 324546 R 471856 CDS YP_003160280.1 256831553 8379498 324876..325670 1 NC_013174.1 KEGG: bra:BRADO3689 hypothetical protein; hypothetical protein 325670 8379498 Jden_0305 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160280.1 324876 D 471856 CDS YP_003160281.1 256831554 8379499 325706..326614 1 NC_013174.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mrd:Mrad2831_5773 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 326614 8379499 Jden_0306 Jonesia denitrificans DSM 20603 Glyoxalase/bleomycin resistance protein/dioxygenase YP_003160281.1 325706 D 471856 CDS YP_003160282.1 256831555 8379500 complement(326611..327624) 1 NC_013174.1 KEGG: vha:VIBHAR_06943 hypothetical protein; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 327624 8379500 Jden_0307 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160282.1 326611 R 471856 CDS YP_003160283.1 256831556 8379501 complement(327697..328527) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 putative sugar transporter, permease protein; binding-protein-dependent transport system inner membrane protein 328527 8379501 Jden_0308 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160283.1 327697 R 471856 CDS YP_003160284.1 256831557 8379502 complement(328529..329443) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC sugar transporter, inner membrane subunit; K02025 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 329443 8379502 Jden_0309 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160284.1 328529 R 471856 CDS YP_003160285.1 256831558 8379503 complement(329533..330855) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein 330855 8379503 Jden_0310 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160285.1 329533 R 471856 CDS YP_003160286.1 256831559 8379504 331079..333214 1 NC_013174.1 PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 333214 8379504 Jden_0311 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003160286.1 331079 D 471856 CDS YP_003160287.1 256831560 8379505 333290..334060 1 NC_013174.1 PFAM: NERD domain protein; KEGG: asa:ASA_2404 hypothetical protein; NERD domain-containing protein 334060 8379505 Jden_0312 Jonesia denitrificans DSM 20603 NERD domain-containing protein YP_003160287.1 333290 D 471856 CDS YP_003160288.1 256831561 8379506 complement(334118..334378) 1 NC_013174.1 hypothetical protein 334378 8379506 Jden_0313 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160288.1 334118 R 471856 CDS YP_003160289.1 256831562 8379507 334655..335746 1 NC_013174.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; KEGG: cvi:CV_3164 thiamin-binding periplasmic protein; ABC transporter substrate-binding protein 335746 8379507 Jden_0314 Jonesia denitrificans DSM 20603 ABC transporter substrate-binding protein YP_003160289.1 334655 D 471856 CDS YP_003160290.1 256831563 8379508 335703..337421 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3245 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 337421 8379508 Jden_0315 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160290.1 335703 D 471856 CDS YP_003160291.1 256831564 8379509 337418..338446 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2699 ABC transporter ATP-binding protein; ABC transporter 338446 8379509 Jden_0316 Jonesia denitrificans DSM 20603 ABC transporter YP_003160291.1 337418 D 471856 CDS YP_003160292.1 256831565 8379510 338471..338779 1 NC_013174.1 KEGG: nmu:Nmul_A1876 hypothetical protein; hypothetical protein 338779 8379510 Jden_0317 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160292.1 338471 D 471856 CDS YP_003160293.1 256831566 8379511 339056..340546 1 NC_013174.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: pde:Pden_3115 protein of unknown function DUF21; hypothetical protein 340546 8379511 Jden_0318 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160293.1 339056 D 471856 CDS YP_003160294.1 256831567 8379512 340543..341571 1 NC_013174.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: shl:Shal_2700 hypothetical protein; hypothetical protein 341571 8379512 Jden_0319 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160294.1 340543 D 471856 CDS YP_003160295.1 256831568 8381727 342258..342764 1 NC_013174.1 KEGG: sew:SeSA_B0041 TniAdelta1; TniAdelta1 342764 8381727 Jden_0321 Jonesia denitrificans DSM 20603 TniAdelta1 YP_003160295.1 342258 D 471856 CDS YP_003160296.1 256831569 8379514 complement(342823..343344) 1 NC_013174.1 PFAM: protein of unknown function UPF0157; KEGG: bha:BH1888 hypothetical protein; hypothetical protein 343344 8379514 Jden_0322 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160296.1 342823 R 471856 CDS YP_003160297.1 256831570 8379515 343438..343956 1 NC_013174.1 TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: rme:Rmet_0568 adenylate cyclase; adenylyl cyclase CyaB 343956 8379515 Jden_0323 Jonesia denitrificans DSM 20603 adenylyl cyclase CyaB YP_003160297.1 343438 D 471856 CDS YP_003160298.1 256831571 8379516 complement(344527..346269) 1 NC_013174.1 KEGG: hypothetical protein; PFAM: Ricin B lectin; SMART: Ricin B lectin; glucan endo-1,3-beta-D-glucosidase 346269 8379516 Jden_0324 Jonesia denitrificans DSM 20603 glucan endo-1,3-beta-D-glucosidase YP_003160298.1 344527 R 471856 CDS YP_003160299.1 256831572 8379517 complement(346378..347460) 1 NC_013174.1 hypothetical protein 347460 8379517 Jden_0325 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160299.1 346378 R 471856 CDS YP_003160300.1 256831573 8379518 complement(347527..348504) 1 NC_013174.1 PFAM: Bile acid:sodium symporter; KEGG: ccs:CCNA_01729 transporter, sodium/bile acid symporter family; bile acid:sodium symporter 348504 8379518 Jden_0326 Jonesia denitrificans DSM 20603 bile acid:sodium symporter YP_003160300.1 347527 R 471856 CDS YP_003160301.1 256831574 8379519 348674..349300 1 NC_013174.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: pde:Pden_1253 protein of unknown function DUF125, transmembrane; hypothetical protein 349300 8379519 Jden_0327 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160301.1 348674 D 471856 CDS YP_003160302.1 256831575 8379520 349513..349953 1 NC_013174.1 PFAM: Domain of unknown function DUF1801; KEGG: sal:Sala_0493 hypothetical protein; hypothetical protein 349953 8379520 Jden_0328 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160302.1 349513 D 471856 CDS YP_003160303.1 256831576 8379521 350232..351569 1 NC_013174.1 PFAM: Pectate lyase; Ricin B lectin; KEGG: pectate lyase, putative; pectate lyase 351569 8379521 Jden_0329 Jonesia denitrificans DSM 20603 pectate lyase YP_003160303.1 350232 D 471856 CDS YP_003160304.1 256831577 8379522 351747..353021 1 NC_013174.1 PFAM: Peptidase M23; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pla:Plav_1754 peptidase M23B; peptidase M23 353021 8379522 Jden_0330 Jonesia denitrificans DSM 20603 peptidase M23 YP_003160304.1 351747 D 471856 CDS YP_003160305.1 256831578 8379523 complement(353094..353237) 1 NC_013174.1 hypothetical protein 353237 8379523 Jden_0331 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160305.1 353094 R 471856 CDS YP_003160306.1 256831579 8379524 complement(353299..353562) 1 NC_013174.1 KEGG: set:SEN1240 hypothetical protein; hypothetical protein 353562 8379524 Jden_0332 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160306.1 353299 R 471856 CDS YP_003160307.1 256831580 8379525 complement(353701..355317) 1 NC_013174.1 KEGG: bcb:BCB4264_A2187 hypothetical membrane spanning protein; hypothetical protein 355317 8379525 Jden_0333 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160307.1 353701 R 471856 CDS YP_003160308.1 256831581 8379526 355441..355866 1 NC_013174.1 PFAM: OsmC family protein; KEGG: rce:RC1_2171 organic hydroperoxide resistance protein; OsmC family protein 355866 8379526 Jden_0334 Jonesia denitrificans DSM 20603 OsmC family protein YP_003160308.1 355441 D 471856 CDS YP_003160309.1 256831582 8379527 356013..358121 1 NC_013174.1 PFAM: MMPL domain protein; KEGG: bcy:Bcer98_1512 MmpL domain-containing protein; MMPL domain-containing protein 358121 8379527 Jden_0335 Jonesia denitrificans DSM 20603 MMPL domain-containing protein YP_003160309.1 356013 D 471856 CDS YP_003160310.1 256831583 8379528 358118..358462 1 NC_013174.1 KEGG: mca:MCA0704 hypothetical protein; hypothetical protein 358462 8379528 Jden_0336 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160310.1 358118 D 471856 CDS YP_003160311.1 256831584 8379529 complement(358475..359335) 1 NC_013174.1 PFAM: UbiA prenyltransferase; KEGG: gbm:Gbem_0232 4-hydroxybenzoate polyprenyltransferase; UbiA prenyltransferase 359335 8379529 Jden_0337 Jonesia denitrificans DSM 20603 UbiA prenyltransferase YP_003160311.1 358475 R 471856 CDS YP_003160312.1 256831585 8379530 complement(359332..359694) 1 NC_013174.1 TIGRFAM: lycopene cyclase domain protein; lycopene cyclase domain-containing protein 359694 8379530 Jden_0338 Jonesia denitrificans DSM 20603 lycopene cyclase domain-containing protein YP_003160312.1 359332 R 471856 CDS YP_003160313.1 256831586 8379531 complement(359691..360005) 1 NC_013174.1 TIGRFAM: lycopene cyclase domain protein; lycopene cyclase domain-containing protein 360005 8379531 Jden_0339 Jonesia denitrificans DSM 20603 lycopene cyclase domain-containing protein YP_003160313.1 359691 R 471856 CDS YP_003160314.1 256831587 8379532 complement(360007..361635) 1 NC_013174.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase; phytoene desaturase 361635 8379532 Jden_0340 Jonesia denitrificans DSM 20603 phytoene desaturase YP_003160314.1 360007 R 471856 CDS YP_003160315.1 256831588 8379533 complement(361632..362570) 1 NC_013174.1 PFAM: Squalene/phytoene synthase; KEGG: scl:sce0581 phytoene synthase; squalene/phytoene synthase 362570 8379533 Jden_0341 Jonesia denitrificans DSM 20603 squalene/phytoene synthase YP_003160315.1 361632 R 471856 CDS YP_003160316.1 256831589 8379534 complement(362567..363604) 1 NC_013174.1 PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A0510 dimethylallyltransferase; polyprenyl synthetase 363604 8379534 Jden_0342 Jonesia denitrificans DSM 20603 polyprenyl synthetase YP_003160316.1 362567 R 471856 CDS YP_003160317.1 256831590 8379535 complement(363594..364190) 1 NC_013174.1 KEGG: stt:t2957 isopentenyl-diphosphate delta- isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase 364190 8379535 Jden_0343 Jonesia denitrificans DSM 20603 isopentenyl-diphosphate delta-isomerase YP_003160317.1 363594 R 471856 CDS YP_003160318.1 256831591 8379536 364334..364885 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cak:Caul_0809 MarR family transcriptional regulator; transcriptional regulator, MarR family 364885 8379536 Jden_0344 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003160318.1 364334 D 471856 CDS YP_003160319.1 256831592 8381729 365671..367404 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter; ABC transporter 367404 8381729 Jden_0347 Jonesia denitrificans DSM 20603 ABC transporter YP_003160319.1 365671 D 471856 CDS YP_003160320.1 256831593 8379538 367401..369392 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter; ABC transporter 369392 8379538 Jden_0348 Jonesia denitrificans DSM 20603 ABC transporter YP_003160320.1 367401 D 471856 CDS YP_003160321.1 256831594 8379539 369630..371489 1 NC_013174.1 KEGG: gme:Gmet_3532 chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 371489 8379539 Jden_0349 Jonesia denitrificans DSM 20603 chaperone protein DnaK YP_003160321.1 369630 D 471856 CDS YP_003160322.1 256831595 8379540 371486..372085 1 NC_013174.1 PFAM: GrpE protein; KEGG: hypothetical protein; K03687 molecular chaperone GrpE; GrpE protein HSP-70 cofactor 372085 8379540 Jden_0350 Jonesia denitrificans DSM 20603 GrpE protein HSP-70 cofactor YP_003160322.1 371486 D 471856 CDS YP_003160323.1 256831596 8379541 372165..373169 1 NC_013174.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: vfi:VF_1108 chaperone protein DnaJ-like protein; chaperone DnaJ domain-containing protein 373169 8379541 Jden_0351 Jonesia denitrificans DSM 20603 chaperone DnaJ domain-containing protein YP_003160323.1 372165 D 471856 CDS YP_003160324.1 256831597 8379542 373176..373718 1 NC_013174.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: nis:NIS_0956 MerR family transcriptional regulator; transcriptional regulator, MerR family 373718 8379542 Jden_0352 Jonesia denitrificans DSM 20603 transcriptional regulator, MerR family YP_003160324.1 373176 D 471856 CDS YP_003160325.1 256831598 8379543 complement(373726..374475) 1 NC_013174.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 374475 8379543 Jden_0353 Jonesia denitrificans DSM 20603 aminoglycoside phosphotransferase YP_003160325.1 373726 R 471856 CDS YP_003160326.1 256831599 8379544 374752..375060 1 NC_013174.1 KEGG: gbm:Gbem_1185 hypothetical protein; hypothetical protein 375060 8379544 Jden_0354 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160326.1 374752 D 471856 CDS YP_003160327.1 256831600 8379545 complement(375067..376017) 1 NC_013174.1 PFAM: transcriptional regulator domain protein; KEGG: scl:sce6445 hypothetical protein; putative winged helix family wo component transcriptional regulator 376017 8379545 Jden_0355 Jonesia denitrificans DSM 20603 putative winged helix family wo component transcriptional regulator YP_003160327.1 375067 R 471856 CDS YP_003160328.1 256831601 8379546 complement(376340..376978) 1 NC_013174.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: bha:BH3764 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 376978 8379546 Jden_0356 Jonesia denitrificans DSM 20603 uracil phosphoribosyltransferase YP_003160328.1 376340 R 471856 CDS YP_003160329.1 256831602 8379547 377094..377558 1 NC_013174.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: glo:Glov_3111 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 377558 8379547 Jden_0357 Jonesia denitrificans DSM 20603 zinc-binding CMP/dCMP deaminase YP_003160329.1 377094 D 471856 CDS YP_003160330.1 256831603 8381730 complement(377855..378604) 1 NC_013174.1 PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein; RelA/SpoT domain-containing protein 378604 8381730 Jden_0358 Jonesia denitrificans DSM 20603 RelA/SpoT domain-containing protein YP_003160330.1 377855 R 471856 CDS YP_003160331.1 256831604 8379549 complement(378787..380415) 1 NC_013174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 380415 8379549 Jden_0359 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003160331.1 378787 R 471856 CDS YP_003160332.1 256831605 8379550 complement(380432..382066) 1 NC_013174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 382066 8379550 Jden_0360 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003160332.1 380432 R 471856 CDS YP_003160333.1 256831606 8379551 382221..382493 1 NC_013174.1 hypothetical protein 382493 8379551 Jden_0361 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160333.1 382221 D 471856 CDS YP_003160334.1 256831607 8379552 complement(382479..383492) 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: spe:Spro_3834 LacI family transcription regulator; transcriptional regulator, LacI family 383492 8379552 Jden_0362 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160334.1 382479 R 471856 CDS YP_003160335.1 256831608 8379553 complement(383489..385723) 1 NC_013174.1 PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase; hypothetical protein 385723 8379553 Jden_0363 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160335.1 383489 R 471856 CDS YP_003160336.1 256831609 8379554 385822..387342 1 NC_013174.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase; alpha-N-arabinofuranosidase 387342 8379554 Jden_0364 Jonesia denitrificans DSM 20603 alpha-N-arabinofuranosidase YP_003160336.1 385822 D 471856 CDS YP_003160337.1 256831610 8379555 387620..387934 1 NC_013174.1 hypothetical protein 387934 8379555 Jden_0365 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160337.1 387620 D 471856 CDS YP_003160338.1 256831611 8379556 complement(387942..388358) 1 NC_013174.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase (ArsC); K03741 arsenate reductase; protein-tyrosine phosphatase 388358 8379556 Jden_0366 Jonesia denitrificans DSM 20603 protein-tyrosine phosphatase YP_003160338.1 387942 R 471856 CDS YP_003160339.1 256831612 8379557 complement(388416..389429) 1 NC_013174.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; KEGG: arsenate reductase (ArsC); K03741 arsenate reductase; ArsR family transcriptional regulator 389429 8379557 Jden_0367 Jonesia denitrificans DSM 20603 ArsR family transcriptional regulator YP_003160339.1 388416 R 471856 CDS YP_003160340.1 256831613 8379558 complement(389426..390562) 1 NC_013174.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bca:BCE_A0159 arsenite efflux transporter ArsB; arsenical-resistance protein 390562 8379558 Jden_0368 Jonesia denitrificans DSM 20603 arsenical-resistance protein YP_003160340.1 389426 R 471856 CDS YP_003160341.1 256831614 8379559 complement(390695..391417) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 391417 8379559 Jden_0369 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160341.1 390695 R 471856 CDS YP_003160342.1 256831615 8379560 391548..393233 1 NC_013174.1 PFAM: phosphoglucose isomerase (PGI); KEGG: sat:SYN_02950 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 393233 8379560 Jden_0370 Jonesia denitrificans DSM 20603 glucose-6-phosphate isomerase YP_003160342.1 391548 D 471856 CDS YP_003160343.1 256831616 8379561 393506..394417 1 NC_013174.1 hypothetical protein 394417 8379561 Jden_0371 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160343.1 393506 D 471856 CDS YP_003160344.1 256831617 8379562 394424..395392 1 NC_013174.1 hypothetical protein 395392 8379562 Jden_0372 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160344.1 394424 D 471856 CDS YP_003160345.1 256831618 8379563 395399..396763 1 NC_013174.1 KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; hypothetical protein 396763 8379563 Jden_0373 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160345.1 395399 D 471856 CDS YP_003160346.1 256831619 8379564 396760..397458 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA4061 putative ABC transporter protein,ATPase component; ABC transporter 397458 8379564 Jden_0374 Jonesia denitrificans DSM 20603 ABC transporter YP_003160346.1 396760 D 471856 CDS YP_003160347.1 256831620 8379565 397575..398717 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related; hypothetical protein 398717 8379565 Jden_0375 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160347.1 397575 D 471856 CDS YP_003160348.1 256831621 8379566 complement(398773..399849) 1 NC_013174.1 KEGG: mmr:Mmar10_2718 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 399849 8379566 Jden_0376 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160348.1 398773 R 471856 CDS YP_003160349.1 256831622 8379567 399850..400044 1 NC_013174.1 hypothetical protein 400044 8379567 Jden_0377 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160349.1 399850 D 471856 CDS YP_003160350.1 256831623 8379568 400080..402143 1 NC_013174.1 PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 402143 8379568 Jden_0378 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003160350.1 400080 D 471856 CDS YP_003160351.1 256831624 8379569 402140..403027 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K10189 lactose/L- arabinose transport system permease protein; binding-protein-dependent transport system inner membrane protein 403027 8379569 Jden_0379 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160351.1 402140 D 471856 CDS YP_003160352.1 256831625 8379570 403027..403932 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0127 ABC-type sugar transport system, permease component; binding-protein-dependent transport system inner membrane protein 403932 8379570 Jden_0380 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160352.1 403027 D 471856 CDS YP_003160353.1 256831626 8379571 403998..405335 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein 405335 8379571 Jden_0381 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160353.1 403998 D 471856 CDS YP_003160354.1 256831627 8379572 complement(405483..406259) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter nucleotide binding/ATPase protein (peptide); K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein; ABC transporter 406259 8379572 Jden_0382 Jonesia denitrificans DSM 20603 ABC transporter YP_003160354.1 405483 R 471856 CDS YP_003160355.1 256831628 8379573 406428..406763 1 NC_013174.1 PFAM: protein of unknown function DUF202; KEGG: pmy:Pmen_1718 hypothetical protein; hypothetical protein 406763 8379573 Jden_0383 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160355.1 406428 D 471856 CDS YP_003160356.1 256831629 8379574 406760..407131 1 NC_013174.1 PFAM: protein of unknown function DUF202; KEGG: hypothetical protein; hypothetical protein 407131 8379574 Jden_0384 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160356.1 406760 D 471856 CDS YP_003160357.1 256831630 8379575 complement(407135..409333) 1 NC_013174.1 KEGG: bha:BH2023 hypothetical protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: glycosyl hydrolase 53 domain protein; Ig domain protein; LPXTG-motif cell wall anchor domain-containing protein 409333 8379575 Jden_0385 Jonesia denitrificans DSM 20603 LPXTG-motif cell wall anchor domain-containing protein YP_003160357.1 407135 R 471856 CDS YP_003160358.1 256831631 8381731 complement(409624..410586) 1 NC_013174.1 PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 hypothetical protein; hypothetical protein 410586 8381731 Jden_0387 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160358.1 409624 R 471856 CDS YP_003160359.1 256831632 8379577 complement(410710..412308) 1 NC_013174.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_II1465 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter 412308 8379577 Jden_0388 Jonesia denitrificans DSM 20603 EmrB/QacA subfamily drug resistance transporter YP_003160359.1 410710 R 471856 CDS YP_003160360.1 256831633 8379578 complement(412371..413039) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator; TetR family transcriptional regulator 413039 8379578 Jden_0389 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160360.1 412371 R 471856 CDS YP_003160361.1 256831634 8379579 413117..413767 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_0103 transcriptional regulator, TetR family; TetR family transcriptional regulator 413767 8379579 Jden_0390 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160361.1 413117 D 471856 CDS YP_003160362.1 256831635 8379580 413764..415356 1 NC_013174.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5634 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter 415356 8379580 Jden_0391 Jonesia denitrificans DSM 20603 EmrB/QacA subfamily drug resistance transporter YP_003160362.1 413764 D 471856 CDS YP_003160363.1 256831636 8379581 415576..417030 1 NC_013174.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: GK24149 gene product from transcript GK24149- RA; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 417030 8379581 Jden_0392 Jonesia denitrificans DSM 20603 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_003160363.1 415576 D 471856 CDS YP_003160364.1 256831637 8379582 417200..418000 1 NC_013174.1 hypothetical protein 418000 8379582 Jden_0393 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160364.1 417200 D 471856 CDS YP_003160365.1 256831638 8379583 418106..419380 1 NC_013174.1 hypothetical protein 419380 8379583 Jden_0394 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160365.1 418106 D 471856 CDS YP_003160366.1 256831639 8379584 419404..420324 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4430 luciferase-like; luciferase-like monooxygenase 420324 8379584 Jden_0395 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003160366.1 419404 D 471856 CDS YP_003160367.1 256831640 8379585 420457..422373 1 NC_013174.1 PFAM: glycoside hydrolase family 81; KEGG: scl:sce7103 hypothetical protein; glycoside hydrolase family protein 422373 8379585 Jden_0396 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160367.1 420457 D 471856 CDS YP_003160368.1 256831641 8379586 complement(422421..422834) 1 NC_013174.1 KEGG: sde:Sde_1385 HesB/YadR/YfhF; hypothetical protein 422834 8379586 Jden_0397 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160368.1 422421 R 471856 CDS YP_003160369.1 256831642 8379587 423120..424529 1 NC_013174.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bte:BTH_I0252 xanthine/uracil permease family protein; uracil-xanthine permease 424529 8379587 Jden_0398 Jonesia denitrificans DSM 20603 uracil-xanthine permease YP_003160369.1 423120 D 471856 CDS YP_003160370.1 256831643 8379588 complement(424646..425284) 1 NC_013174.1 hypothetical protein 425284 8379588 Jden_0399 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160370.1 424646 R 471856 CDS YP_003160371.1 256831644 8379589 complement(425453..425746) 1 NC_013174.1 hypothetical protein 425746 8379589 Jden_0400 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160371.1 425453 R 471856 CDS YP_003160372.1 256831645 8381732 complement(426191..426886) 1 NC_013174.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: hypothetical protein; K03919 alkylated DNA repair protein; 2OG-Fe(II) oxygenase 426886 8381732 Jden_0402 Jonesia denitrificans DSM 20603 2OG-Fe(II) oxygenase YP_003160372.1 426191 R 471856 CDS YP_003160373.1 256831646 8379591 complement(426934..427470) 1 NC_013174.1 KEGG: afw:Anae109_0178 hypothetical protein; hypothetical protein 427470 8379591 Jden_0403 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160373.1 426934 R 471856 CDS YP_003160374.1 256831647 8379592 427641..428147 1 NC_013174.1 PFAM: protein of unknown function DUF1706; KEGG: hhe:HH1054 hypothetical protein; hypothetical protein 428147 8379592 Jden_0404 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160374.1 427641 D 471856 CDS YP_003160375.1 256831648 8379593 428975..430000 1 NC_013174.1 hypothetical protein 430000 8379593 Jden_0405 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160375.1 428975 D 471856 CDS YP_003160376.1 256831649 8379594 429984..431078 1 NC_013174.1 hypothetical protein 431078 8379594 Jden_0406 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160376.1 429984 D 471856 CDS YP_003160377.1 256831650 8379595 431084..431791 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: esa:ESA_02459 macrolide transporter ATP- binding/permease protein; ABC transporter 431791 8379595 Jden_0407 Jonesia denitrificans DSM 20603 ABC transporter YP_003160377.1 431084 D 471856 CDS YP_003160378.1 256831651 8381736 complement(433595..433753) 1 NC_013174.1 hypothetical protein 433753 8381736 Jden_0410 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160378.1 433595 R 471856 CDS YP_003160379.1 256831652 8379597 434018..434920 1 NC_013174.1 PFAM: NLPA lipoprotein; KEGG: bcz:BCZK0286 lipoprotein ABC transporter substrate-binding protein; NLPA lipoprotein 434920 8379597 Jden_0411 Jonesia denitrificans DSM 20603 NLPA lipoprotein YP_003160379.1 434018 D 471856 CDS YP_003160380.1 256831653 8379598 435049..436152 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A0358 ABC transporter, ATP- binding protein; ABC transporter 436152 8379598 Jden_0412 Jonesia denitrificans DSM 20603 ABC transporter YP_003160380.1 435049 D 471856 CDS YP_003160381.1 256831654 8379599 436149..436841 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcy:Bcer98_0292 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 436841 8379599 Jden_0413 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160381.1 436149 D 471856 CDS YP_003160382.1 256831655 8379600 436908..439526 1 NC_013174.1 KEGG: sus:Acid_3165 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 439526 8379600 Jden_0414 Jonesia denitrificans DSM 20603 DNA polymerase III subunits gamma and tau YP_003160382.1 436908 D 471856 CDS YP_003160383.1 256831656 8379601 439532..440131 1 NC_013174.1 KEGG: bha:BH0036 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domain protein; SMART: Toprim sub domain protein; recombination protein RecR 440131 8379601 Jden_0415 Jonesia denitrificans DSM 20603 recombination protein RecR YP_003160383.1 439532 D 471856 CDS YP_003160384.1 256831657 8379602 440146..440766 1 NC_013174.1 KEGG: hch:HCH_01581 hypothetical protein; hypothetical protein 440766 8379602 Jden_0416 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160384.1 440146 D 471856 CDS YP_003160385.1 256831658 8379603 complement(440920..442056) 1 NC_013174.1 KEGG: scl:sce7370 hypothetical protein; hypothetical protein 442056 8379603 Jden_0417 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160385.1 440920 R 471856 CDS YP_003160386.1 256831659 8379604 complement(442053..442976) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein; ABC transporter 442976 8379604 Jden_0418 Jonesia denitrificans DSM 20603 ABC transporter YP_003160386.1 442053 R 471856 CDS YP_003160387.1 256831660 8379605 443175..444449 1 NC_013174.1 KEGG: pca:Pcar_1006 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 444449 8379605 Jden_0419 Jonesia denitrificans DSM 20603 aspartate kinase YP_003160387.1 443175 D 471856 CDS YP_003160388.1 256831661 8379606 444473..445522 1 NC_013174.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: cak:Caul_4072 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 445522 8379606 Jden_0420 Jonesia denitrificans DSM 20603 aspartate-semialdehyde dehydrogenase YP_003160388.1 444473 D 471856 CDS YP_003160389.1 256831662 8379607 complement(445613..447484) 1 NC_013174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 447484 8379607 Jden_0421 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003160389.1 445613 R 471856 CDS YP_003160390.1 256831663 8379608 complement(447571..447843) 1 NC_013174.1 hypothetical protein 447843 8379608 Jden_0422 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160390.1 447571 R 471856 CDS YP_003160391.1 256831664 8379609 448261..449355 1 NC_013174.1 KEGG: cak:Caul_0311 phospho-2-dehydro-3- deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 449355 8379609 Jden_0423 Jonesia denitrificans DSM 20603 phospho-2-dehydro-3-deoxyheptonate aldolase YP_003160391.1 448261 D 471856 CDS YP_003160392.1 256831665 8379610 449517..450482 1 NC_013174.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: smt:Smal_2998 FAD-binding 9 siderophore- interacting domain protein; Siderophore-interacting protein 450482 8379610 Jden_0424 Jonesia denitrificans DSM 20603 Siderophore-interacting protein YP_003160392.1 449517 D 471856 CDS YP_003160393.1 256831666 8379611 450479..451486 1 NC_013174.1 PFAM: transport system permease protein; KEGG: oan:Oant_2826 transport system permease protein; transport system permease 451486 8379611 Jden_0425 Jonesia denitrificans DSM 20603 transport system permease YP_003160393.1 450479 D 471856 CDS YP_003160394.1 256831667 8379612 451483..452550 1 NC_013174.1 PFAM: transport system permease protein; KEGG: ppg:PputGB1_1806 transport system permease protein; transport system permease 452550 8379612 Jden_0426 Jonesia denitrificans DSM 20603 transport system permease YP_003160394.1 451483 D 471856 CDS YP_003160395.1 256831668 8379613 452547..453404 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3525 ABC transporter related; ABC transporter 453404 8379613 Jden_0427 Jonesia denitrificans DSM 20603 ABC transporter YP_003160395.1 452547 D 471856 CDS YP_003160396.1 256831669 8379614 453432..454460 1 NC_013174.1 PFAM: periplasmic binding protein; KEGG: pde:Pden_3522 periplasmic binding protein; periplasmic binding protein 454460 8379614 Jden_0428 Jonesia denitrificans DSM 20603 periplasmic binding protein YP_003160396.1 453432 D 471856 CDS YP_003160397.1 256831670 8379615 454527..455597 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 455597 8379615 Jden_0429 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160397.1 454527 D 471856 CDS YP_003160398.1 256831671 8381737 complement(455845..457107) 1 NC_013174.1 PFAM: amino acid permease-associated region; KEGG: lpn:lpg0049 amino acid transporter, permease; amino acid permease 457107 8381737 Jden_0430 Jonesia denitrificans DSM 20603 amino acid permease YP_003160398.1 455845 R 471856 CDS YP_003160399.1 256831672 8381738 complement(457447..458394) 1 NC_013174.1 PFAM: metallophosphoesterase; KEGG: pca:Pcar_0763 phosphohydrolases; metallophosphoesterase 458394 8381738 Jden_0431 Jonesia denitrificans DSM 20603 metallophosphoesterase YP_003160399.1 457447 R 471856 CDS YP_003160400.1 256831673 8379618 complement(458398..460752) 1 NC_013174.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dal:Dalk_0613 penicillin-binding protein, 1A family; glycosyl transferase family protein 460752 8379618 Jden_0432 Jonesia denitrificans DSM 20603 glycosyl transferase family protein YP_003160400.1 458398 R 471856 CDS YP_003160401.1 256831674 8379619 460844..461008 1 NC_013174.1 hypothetical protein 461008 8379619 Jden_0433 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160401.1 460844 D 471856 CDS YP_003160402.1 256831675 8379620 461008..461475 1 NC_013174.1 PFAM: Endoribonuclease L-PSP; KEGG: rce:RC1_1921 endoribonuclease L-PSP, putative; endoribonuclease L-PSP 461475 8379620 Jden_0434 Jonesia denitrificans DSM 20603 endoribonuclease L-PSP YP_003160402.1 461008 D 471856 CDS YP_003160403.1 256831676 8379621 complement(461540..462220) 1 NC_013174.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sat:SYN_00574 cAMP-dependent transcriptional regulator; CarD family transcriptional regulator 462220 8379621 Jden_0435 Jonesia denitrificans DSM 20603 CarD family transcriptional regulator YP_003160403.1 461540 R 471856 CDS YP_003160404.1 256831677 8379622 complement(462345..462737) 1 NC_013174.1 hypothetical protein 462737 8379622 Jden_0436 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160404.1 462345 R 471856 CDS YP_003160405.1 256831678 8379623 462874..463614 1 NC_013174.1 KEGG: scl:sce3915 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 463614 8379623 Jden_0437 Jonesia denitrificans DSM 20603 endonuclease III YP_003160405.1 462874 D 471856 CDS YP_003160406.1 256831679 8379624 complement(463576..464508) 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: scl:sce4150 putative hydrolase of unknown specificity; alpha/beta hydrolase fold protein 464508 8379624 Jden_0438 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003160406.1 463576 R 471856 CDS YP_003160407.1 256831680 8379625 complement(464523..465269) 1 NC_013174.1 PFAM: transcriptional regulator domain protein; KEGG: bcz:BCZK1193 response regulator; putative winged helix family wo component transcriptional regulator 465269 8379625 Jden_0439 Jonesia denitrificans DSM 20603 putative winged helix family wo component transcriptional regulator YP_003160407.1 464523 R 471856 CDS YP_003160408.1 256831681 8379626 465272..466144 1 NC_013174.1 KEGG: gdi:GDI3313 hypothetical protein; hypothetical protein 466144 8379626 Jden_0440 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160408.1 465272 D 471856 CDS YP_003160409.1 256831682 8379627 complement(466187..466546) 1 NC_013174.1 KEGG: oca:OCAR_7467 hypothetical protein; hypothetical protein 466546 8379627 Jden_0441 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160409.1 466187 R 471856 CDS YP_003160410.1 256831683 8379628 466579..466698 1 NC_013174.1 hypothetical protein 466698 8379628 Jden_0442 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160410.1 466579 D 471856 CDS YP_003160411.1 256831684 8379629 466701..467285 1 NC_013174.1 PFAM: Domain of unknown function DUF1794; KEGG: hypothetical protein; hypothetical protein 467285 8379629 Jden_0443 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160411.1 466701 D 471856 CDS YP_003160412.1 256831685 8379630 467278..468447 1 NC_013174.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aba:Acid345_2628 glycine cleavage T protein, aminomethyl transferase; folate-binding protein YgfZ 468447 8379630 Jden_0444 Jonesia denitrificans DSM 20603 folate-binding protein YgfZ YP_003160412.1 467278 D 471856 CDS YP_003160413.1 256831686 8379631 468494..469603 1 NC_013174.1 KEGG: atc:AGR_C_2137 hypothetical protein; hypothetical protein 469603 8379631 Jden_0445 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160413.1 468494 D 471856 CDS YP_003160414.1 256831687 8379632 469629..469958 1 NC_013174.1 hypothetical protein 469958 8379632 Jden_0446 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160414.1 469629 D 471856 CDS YP_003160415.1 256831688 8379633 469960..470385 1 NC_013174.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: bha:BH1243 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase 470385 8379633 Jden_0447 Jonesia denitrificans DSM 20603 D-tyrosyl-tRNA(Tyr) deacylase YP_003160415.1 469960 D 471856 CDS YP_003160416.1 256831689 8379634 470437..471582 1 NC_013174.1 PFAM: glycosyl transferase group 1; KEGG: ank:AnaeK_3592 glycosyl transferase group 1; group 1 glycosyl transferase 471582 8379634 Jden_0448 Jonesia denitrificans DSM 20603 group 1 glycosyl transferase YP_003160416.1 470437 D 471856 CDS YP_003160417.1 256831690 8379635 471708..474236 1 NC_013174.1 PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bsu:BSU00860 class III stress response- related ATPase; ATPase AAA-2 domain-containing protein 474236 8379635 Jden_0449 Jonesia denitrificans DSM 20603 ATPase AAA-2 domain-containing protein YP_003160417.1 471708 D 471856 CDS YP_003160418.1 256831691 8379636 complement(474332..474928) 1 NC_013174.1 KEGG: mmr:Mmar10_0044 uridine kinase; uridine kinase-like protein 474928 8379636 Jden_0450 Jonesia denitrificans DSM 20603 uridine kinase-like protein YP_003160418.1 474332 R 471856 CDS YP_003160419.1 256831692 8379637 complement(474925..475272) 1 NC_013174.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pla:Plav_2471 regulatory protein ArsR; ArsR family transcriptional regulator 475272 8379637 Jden_0451 Jonesia denitrificans DSM 20603 ArsR family transcriptional regulator YP_003160419.1 474925 R 471856 CDS YP_003160420.1 256831693 8379638 complement(475280..476209) 1 NC_013174.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xca:xccb100_3038 cobalt-zinc-cadmium efflux permease; cation diffusion facilitator family transporter 476209 8379638 Jden_0452 Jonesia denitrificans DSM 20603 cation diffusion facilitator family transporter YP_003160420.1 475280 R 471856 CDS YP_003160421.1 256831694 8379639 476324..477064 1 NC_013174.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: scl:sce0751 GntR family transcriptional regulator; GntR family transcriptional regulator 477064 8379639 Jden_0453 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003160421.1 476324 D 471856 CDS YP_003160422.1 256831695 8379640 complement(477061..477882) 1 NC_013174.1 KEGG: pzu:PHZ_c1695 hypothetical protein; hypothetical protein 477882 8379640 Jden_0454 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160422.1 477061 R 471856 CDS YP_003160423.1 256831696 8379641 478020..478397 1 NC_013174.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 478397 8379641 Jden_0455 Jonesia denitrificans DSM 20603 FHA domain-containing protein YP_003160423.1 478020 D 471856 CDS YP_003160424.1 256831697 8379642 478423..479286 1 NC_013174.1 SMART: protein phosphatase 2C domain protein; KEGG: cja:CJA_1646 protein phosphatase; protein serine/threonine phosphatase 479286 8379642 Jden_0456 Jonesia denitrificans DSM 20603 protein serine/threonine phosphatase YP_003160424.1 478423 D 471856 CDS YP_003160425.1 256831698 8379643 479289..480893 1 NC_013174.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ank:AnaeK_0242 Fe-S oxidoreductase; FHA domain-containing protein 480893 8379643 Jden_0457 Jonesia denitrificans DSM 20603 FHA domain-containing protein YP_003160425.1 479289 D 471856 CDS YP_003160426.1 256831699 8379644 480890..482707 1 NC_013174.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_0222 serine/threonine protein kinase; serine/threonine protein kinase 482707 8379644 Jden_0458 Jonesia denitrificans DSM 20603 serine/threonine protein kinase YP_003160426.1 480890 D 471856 CDS YP_003160427.1 256831700 8379645 482704..488835 1 NC_013174.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR; fibronectin type III domain-containing protein 488835 8379645 Jden_0459 Jonesia denitrificans DSM 20603 fibronectin type III domain-containing protein YP_003160427.1 482704 D 471856 CDS YP_003160428.1 256831701 8379646 488953..489984 1 NC_013174.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bcr:BCAH187_A2274 methanol dehydrogenase regulatory protein; magnesium chelatase; ATPase 489984 8379646 Jden_0460 Jonesia denitrificans DSM 20603 ATPase YP_003160428.1 488953 D 471856 CDS YP_003160429.1 256831702 8379647 489997..491184 1 NC_013174.1 PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein; hypothetical protein 491184 8379647 Jden_0461 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160429.1 489997 D 471856 CDS YP_003160430.1 256831703 8381739 complement(493504..494550) 1 NC_013174.1 PFAM: aldo/keto reductase; KEGG: xac:XAC3199 oxidoreductase; aldo/keto reductase 494550 8381739 Jden_0463 Jonesia denitrificans DSM 20603 aldo/keto reductase YP_003160430.1 493504 R 471856 CDS YP_003160431.1 256831704 8379649 complement(494708..496408) 1 NC_013174.1 KEGG: Muc3; mucin 3, intestinal; hypothetical protein 496408 8379649 Jden_0464 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160431.1 494708 R 471856 CDS YP_003160432.1 256831705 8379650 complement(496401..497633) 1 NC_013174.1 PFAM: ROK family protein; KEGG: acr:Acry_0116 ROK family protein; ROK family protein 497633 8379650 Jden_0465 Jonesia denitrificans DSM 20603 ROK family protein YP_003160432.1 496401 R 471856 CDS YP_003160433.1 256831706 8379651 497711..498889 1 NC_013174.1 KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 498889 8379651 Jden_0466 Jonesia denitrificans DSM 20603 xylose isomerase YP_003160433.1 497711 D 471856 CDS YP_003160434.1 256831707 8379652 498894..500336 1 NC_013174.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase; xylulokinase 500336 8379652 Jden_0467 Jonesia denitrificans DSM 20603 xylulokinase YP_003160434.1 498894 D 471856 CDS YP_003160435.1 256831708 8379653 500595..501329 1 NC_013174.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: maq:Maqu_0488 response regulator receiver protein; LytTR family two component transcriptional regulator 501329 8379653 Jden_0468 Jonesia denitrificans DSM 20603 LytTR family two component transcriptional regulator YP_003160435.1 500595 D 471856 CDS YP_003160436.1 256831709 8379654 501326..502660 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_1389 sensor protein PhoQ; ATP-binding protein 502660 8379654 Jden_0469 Jonesia denitrificans DSM 20603 ATP-binding protein YP_003160436.1 501326 D 471856 CDS YP_003160437.1 256831710 8379655 complement(502741..503178) 1 NC_013174.1 KEGG: mlo:msl1572 hypothetical protein; hypothetical protein 503178 8379655 Jden_0470 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160437.1 502741 R 471856 CDS YP_003160438.1 256831711 8379656 complement(503302..505695) 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase; glycoside hydrolase family 3 505695 8379656 Jden_0471 Jonesia denitrificans DSM 20603 glycoside hydrolase family 3 YP_003160438.1 503302 R 471856 CDS YP_003160439.1 256831712 8379657 506170..509127 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_2107 glycoside hydrolase family 3 protein; Beta-glucosidase 509127 8379657 Jden_0472 Jonesia denitrificans DSM 20603 Beta-glucosidase YP_003160439.1 506170 D 471856 CDS YP_003160440.1 256831713 8379658 complement(509253..509813) 1 NC_013174.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tbd:Tbd_2407 RNA methyltransferase CspR; tRNA/rRNA methyltransferase SpoU 509813 8379658 Jden_0473 Jonesia denitrificans DSM 20603 tRNA/rRNA methyltransferase SpoU YP_003160440.1 509253 R 471856 CDS YP_003160441.1 256831714 8379659 complement(509813..510457) 1 NC_013174.1 KEGG: xcv:XCV0076 hypothetical protein; hypothetical protein 510457 8379659 Jden_0474 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160441.1 509813 R 471856 CDS YP_003160442.1 256831715 8379660 510683..511594 1 NC_013174.1 hypothetical protein 511594 8379660 Jden_0475 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160442.1 510683 D 471856 CDS YP_003160443.1 256831716 8379661 511780..512268 1 NC_013174.1 hypothetical protein 512268 8379661 Jden_0476 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160443.1 511780 D 471856 CDS YP_003160444.1 256831717 8379662 512319..513278 1 NC_013174.1 hypothetical protein 513278 8379662 Jden_0477 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160444.1 512319 D 471856 CDS YP_003160445.1 256831718 8379663 513275..514690 1 NC_013174.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein; peptidoglycan-binding domain 1 protein 514690 8379663 Jden_0478 Jonesia denitrificans DSM 20603 peptidoglycan-binding domain 1 protein YP_003160445.1 513275 D 471856 CDS YP_003160446.1 256831719 8379664 514687..515370 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; ABC transporter 515370 8379664 Jden_0479 Jonesia denitrificans DSM 20603 ABC transporter YP_003160446.1 514687 D 471856 CDS YP_003160447.1 256831720 8379665 515374..516561 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related; hypothetical protein 516561 8379665 Jden_0480 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160447.1 515374 D 471856 CDS YP_003160448.1 256831721 8379666 complement(516668..519016) 1 NC_013174.1 TIGRFAM: YhgE/Pip N-terminal domain protein; KEGG: bca:BCE_1178 hypothetical protein; YhgE/Pip N-terminal domain-containing protein 519016 8379666 Jden_0481 Jonesia denitrificans DSM 20603 YhgE/Pip N-terminal domain-containing protein YP_003160448.1 516668 R 471856 CDS YP_003160449.1 256831722 8379667 complement(519013..521742) 1 NC_013174.1 PFAM: MMPL domain protein; KEGG: bsu:BSU05430 hypothetical protein; MMPL domain-containing protein 521742 8379667 Jden_0482 Jonesia denitrificans DSM 20603 MMPL domain-containing protein YP_003160449.1 519013 R 471856 CDS YP_003160450.1 256831723 8379668 521886..522566 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: spe:Spro_2373 TetR family transcriptional regulator; TetR family transcriptional regulator 522566 8379668 Jden_0483 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160450.1 521886 D 471856 CDS YP_003160451.1 256831724 8379669 complement(522516..524318) 1 NC_013174.1 PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: gsu:GSU0541 DNA polymerase I; DNA-directed DNA polymerase 524318 8379669 Jden_0484 Jonesia denitrificans DSM 20603 DNA-directed DNA polymerase YP_003160451.1 522516 R 471856 CDS YP_003160452.1 256831725 8379670 complement(524430..525947) 1 NC_013174.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: gdi:GDI0266 putative glycerol kinase; glycerol kinase 525947 8379670 Jden_0485 Jonesia denitrificans DSM 20603 glycerol kinase YP_003160452.1 524430 R 471856 CDS YP_003160453.1 256831726 8379671 complement(525984..526724) 1 NC_013174.1 PFAM: major intrinsic protein; KEGG: azc:AZC_2711 glycerol uptake facilitator protein; major intrinsic protein 526724 8379671 Jden_0486 Jonesia denitrificans DSM 20603 major intrinsic protein YP_003160453.1 525984 R 471856 CDS YP_003160454.1 256831727 8379672 complement(526833..528581) 1 NC_013174.1 PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_2018 FAD dependent oxidoreductase; FAD dependent oxidoreductase 528581 8379672 Jden_0487 Jonesia denitrificans DSM 20603 FAD dependent oxidoreductase YP_003160454.1 526833 R 471856 CDS YP_003160455.1 256831728 8379673 528677..529630 1 NC_013174.1 PFAM: putative sugar-binding domain protein; KEGG: bcy:Bcer98_1468 DeoR family transcriptional regulator; Cro/CI family transcriptional regulator 529630 8379673 Jden_0488 Jonesia denitrificans DSM 20603 Cro/CI family transcriptional regulator YP_003160455.1 528677 D 471856 CDS YP_003160456.1 256831729 8379674 529669..530193 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase; N-acetyltransferase GCN5 530193 8379674 Jden_0489 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160456.1 529669 D 471856 CDS YP_003160457.1 256831730 8379675 complement(530168..531103) 1 NC_013174.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: swi:Swit_4690 A/G-specific DNA-adenine glycosylase; HhH-GPD family protein 531103 8379675 Jden_0490 Jonesia denitrificans DSM 20603 HhH-GPD family protein YP_003160457.1 530168 R 471856 CDS YP_003160458.1 256831731 8379676 531343..531915 1 NC_013174.1 KEGG: GK17577 gene product from transcript GK17577- RA; hypothetical protein 531915 8379676 Jden_0491 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160458.1 531343 D 471856 CDS YP_003160459.1 256831732 8379677 complement(531962..533050) 1 NC_013174.1 PFAM: protein of unknown function DUF147; helix- hairpin-helix motif; KEGG: bsu:BSU00880 DNA integrity scanning protein DisA; hypothetical protein 533050 8379677 Jden_0492 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160459.1 531962 R 471856 CDS YP_003160460.1 256831733 8379678 complement(533154..534515) 1 NC_013174.1 KEGG: bpt:Bpet3157 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA 534515 8379678 Jden_0493 Jonesia denitrificans DSM 20603 DNA repair protein RadA YP_003160460.1 533154 R 471856 CDS YP_003160461.1 256831734 8379679 534610..535320 1 NC_013174.1 KEGG: pde:Pden_4052 mucin-associated surface protein; hypothetical protein 535320 8379679 Jden_0494 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160461.1 534610 D 471856 CDS YP_003160462.1 256831735 8379680 535317..536324 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family 536324 8379680 Jden_0495 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160462.1 535317 D 471856 CDS YP_003160463.1 256831736 8379681 536485..538104 1 NC_013174.1 PFAM: carbohydrate kinase FGGY; KEGG: msu:MS1411 XylB protein; carbohydrate kinase FGGY 538104 8379681 Jden_0496 Jonesia denitrificans DSM 20603 carbohydrate kinase FGGY YP_003160463.1 536485 D 471856 CDS YP_003160464.1 256831737 8379682 538132..538860 1 NC_013174.1 PFAM: class II aldolase/adducin family protein; KEGG: aha:AHA_1901 L-ribulose-5-phosphate 4- epimerase; class II aldolase/adducin family protein 538860 8379682 Jden_0497 Jonesia denitrificans DSM 20603 class II aldolase/adducin family protein YP_003160464.1 538132 D 471856 CDS YP_003160465.1 256831738 8379683 538891..540399 1 NC_013174.1 PFAM: L-arabinose isomerase; KEGG: scl:sce3310 L-arabinose isomerase; L-arabinose isomerase 540399 8379683 Jden_0498 Jonesia denitrificans DSM 20603 L-arabinose isomerase YP_003160465.1 538891 D 471856 CDS YP_003160466.1 256831739 8379684 540727..541866 1 NC_013174.1 KEGG: bha:BH3442 multiple sugar transport system (multiple sugar-binding protein); multiple sugar transport system (multiple sugar- binding protein) 541866 8379684 Jden_0499 Jonesia denitrificans DSM 20603 multiple sugar transport system (multiple sugar- binding protein) YP_003160466.1 540727 D 471856 CDS YP_003160467.1 256831740 8379685 542012..542152 1 NC_013174.1 hypothetical protein 542152 8379685 Jden_0500 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160467.1 542012 D 471856 CDS YP_003160468.1 256831741 8379686 542143..543423 1 NC_013174.1 PFAM: glycoside hydrolase family 43; KEGG: bha:BH1867 hypothetical protein; alpha-N-arabinofuranosidase 543423 8379686 Jden_0501 Jonesia denitrificans DSM 20603 alpha-N-arabinofuranosidase YP_003160468.1 542143 D 471856 CDS YP_003160469.1 256831742 8379687 543993..545138 1 NC_013174.1 KEGG: bja:blr3208 ABC transporter sugar-binding protein; sugar ABC transporter substrate-binding protein 545138 8379687 Jden_0502 Jonesia denitrificans DSM 20603 sugar ABC transporter substrate-binding protein YP_003160469.1 543993 D 471856 CDS YP_003160470.1 256831743 8379688 545249..546775 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein; ABC transporter 546775 8379688 Jden_0503 Jonesia denitrificans DSM 20603 ABC transporter YP_003160470.1 545249 D 471856 CDS YP_003160471.1 256831744 8379689 546781..547959 1 NC_013174.1 PFAM: inner-membrane translocator; KEGG: bha:BH3440 L-arabinose ABC transporter (permease); monosaccharide-transporting ATPase 547959 8379689 Jden_0504 Jonesia denitrificans DSM 20603 monosaccharide-transporting ATPase YP_003160471.1 546781 D 471856 CDS YP_003160472.1 256831745 8379690 complement(548079..548843) 1 NC_013174.1 PFAM: TrkA-N domain protein; KEGG: mno:Mnod_7573 TrkA-N domain protein; TrkA-N domain-containing protein 548843 8379690 Jden_0505 Jonesia denitrificans DSM 20603 TrkA-N domain-containing protein YP_003160472.1 548079 R 471856 CDS YP_003160473.1 256831746 8379691 complement(548836..550212) 1 NC_013174.1 PFAM: cation transporter; KEGG: mno:Mnod_7572 cation transporter; H(+)-transporting two-sector ATPase 550212 8379691 Jden_0506 Jonesia denitrificans DSM 20603 H(+)-transporting two-sector ATPase YP_003160473.1 548836 R 471856 CDS YP_003160474.1 256831747 8379692 550334..551521 1 NC_013174.1 PFAM: histone deacetylase superfamily; KEGG: bha:BH3237 acetoin dehydrogenase; histone deacetylase superfamily protein 551521 8379692 Jden_0507 Jonesia denitrificans DSM 20603 histone deacetylase superfamily protein YP_003160474.1 550334 D 471856 CDS YP_003160475.1 256831748 8379693 551959..553002 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pfl:PFL_2104 ribose operon repressor; transcriptional regulator, LacI family 553002 8379693 Jden_0508 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160475.1 551959 D 471856 CDS YP_003160476.1 256831749 8379694 complement(552967..553677) 1 NC_013174.1 PFAM: protein of unknown function DUF624; KEGG: bha:BH3684 hypothetical protein; hypothetical protein 553677 8379694 Jden_0509 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160476.1 552967 R 471856 CDS YP_003160477.1 256831750 8379695 complement(553756..555126) 1 NC_013174.1 PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; glycoside hydrolase family protein 555126 8379695 Jden_0510 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160477.1 553756 R 471856 CDS YP_003160478.1 256831751 8379696 complement(555135..556091) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1866 sugar transport system (permease) (binding protein dependent transporter); binding-protein-dependent transport system inner membrane protein 556091 8379696 Jden_0511 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160478.1 555135 R 471856 CDS YP_003160479.1 256831752 8379697 complement(556100..557056) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce3058 sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 557056 8379697 Jden_0512 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160479.1 556100 R 471856 CDS YP_003160480.1 256831753 8379698 complement(557113..558456) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein; extracellular solute-binding protein 558456 8379698 Jden_0513 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003160480.1 557113 R 471856 CDS YP_003160481.1 256831754 8379699 558803..560110 1 NC_013174.1 KEGG: sus:Acid_1472 glycoside hydrolase, clan GH-D; glycoside hydrolase, clan GH-D 560110 8379699 Jden_0514 Jonesia denitrificans DSM 20603 glycoside hydrolase, clan GH-D YP_003160481.1 558803 D 471856 CDS YP_003160482.1 256831755 8379700 560138..561661 1 NC_013174.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: vei:Veis_3457 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase 561661 8379700 Jden_0515 Jonesia denitrificans DSM 20603 alpha-N-arabinofuranosidase YP_003160482.1 560138 D 471856 CDS YP_003160483.1 256831756 8379701 561694..562794 1 NC_013174.1 PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1961 arabinan endo-1,5-alpha-L- arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 562794 8379701 Jden_0516 Jonesia denitrificans DSM 20603 arabinan endo-1,5-alpha-L-arabinosidase YP_003160483.1 561694 D 471856 CDS YP_003160484.1 256831757 8379702 562856..563119 1 NC_013174.1 PFAM: glutaredoxin 2; KEGG: bxe:Bxe_A1082 hypothetical protein; glutaredoxin 563119 8379702 Jden_0517 Jonesia denitrificans DSM 20603 glutaredoxin YP_003160484.1 562856 D 471856 CDS YP_003160485.1 256831758 8379703 complement(563200..563745) 1 NC_013174.1 PFAM: YceI family protein; KEGG: mxa:MXAN_4355 YceI-like family protein; hypothetical protein 563745 8379703 Jden_0518 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160485.1 563200 R 471856 CDS YP_003160486.1 256831759 8379704 564006..564491 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: efe:EFER_2801 putative MarR-family regulatory protein; transcriptional regulator, MarR family 564491 8379704 Jden_0519 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003160486.1 564006 D 471856 CDS YP_003160487.1 256831760 8379705 564529..565173 1 NC_013174.1 PFAM: Phosphoglycerate mutase; KEGG: met:M446_2115 phosphoglycerate mutase; phosphoglycerate mutase 565173 8379705 Jden_0520 Jonesia denitrificans DSM 20603 phosphoglycerate mutase YP_003160487.1 564529 D 471856 CDS YP_003160488.1 256831761 8379706 565216..565836 1 NC_013174.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: eba:ebA1468 thioredoxin; redoxin domain-containing protein 565836 8379706 Jden_0521 Jonesia denitrificans DSM 20603 redoxin domain-containing protein YP_003160488.1 565216 D 471856 CDS YP_003160489.1 256831762 8379707 565836..566612 1 NC_013174.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: oca:OCAR_5474 C-type cytochrome biogenesis protein; cytochrome c biogenesis protein transmembrane region 566612 8379707 Jden_0522 Jonesia denitrificans DSM 20603 cytochrome c biogenesis protein transmembrane region YP_003160489.1 565836 D 471856 CDS YP_003160490.1 256831763 8379708 566613..568211 1 NC_013174.1 PFAM: ResB family protein; KEGG: ngo:NGO0102 putative cytochrome biogenesis protein; ResB family protein 568211 8379708 Jden_0523 Jonesia denitrificans DSM 20603 ResB family protein YP_003160490.1 566613 D 471856 CDS YP_003160491.1 256831764 8379709 568244..569149 1 NC_013174.1 TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_2228 ABC-type transport system, permease component; cytochrome c-type biogenesis protein CcsB 569149 8379709 Jden_0524 Jonesia denitrificans DSM 20603 cytochrome c-type biogenesis protein CcsB YP_003160491.1 568244 D 471856 CDS YP_003160492.1 256831765 8379710 complement(569188..569655) 1 NC_013174.1 KEGG: GH12479 gene product from transcript GH12479- RA; hypothetical protein 569655 8379710 Jden_0525 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160492.1 569188 R 471856 CDS YP_003160493.1 256831766 8379711 569687..569959 1 NC_013174.1 hypothetical protein 569959 8379711 Jden_0526 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160493.1 569687 D 471856 CDS YP_003160494.1 256831767 8379712 complement(569988..570866) 1 NC_013174.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: shw:Sputw3181_2299 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 570866 8379712 Jden_0527 Jonesia denitrificans DSM 20603 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_003160494.1 569988 R 471856 CDS YP_003160495.1 256831768 8379713 complement(570879..571979) 1 NC_013174.1 PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce3015 O-succinylbenzoate-CoA ligase; AMP-dependent synthetase and ligase 571979 8379713 Jden_0528 Jonesia denitrificans DSM 20603 AMP-dependent synthetase and ligase YP_003160495.1 570879 R 471856 CDS YP_003160496.1 256831769 8379714 572054..573184 1 NC_013174.1 KEGG: bsu:BSU06570 hypothetical protein; hypothetical protein 573184 8379714 Jden_0529 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160496.1 572054 D 471856 CDS YP_003160497.1 256831770 8379715 573247..573528 1 NC_013174.1 hypothetical protein 573528 8379715 Jden_0530 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160497.1 573247 D 471856 CDS YP_003160498.1 256831771 8379716 complement(573542..574495) 1 NC_013174.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dal:Dalk_1406 naphthoate synthase; naphthoate synthase 574495 8379716 Jden_0531 Jonesia denitrificans DSM 20603 naphthoate synthase YP_003160498.1 573542 R 471856 CDS YP_003160499.1 256831772 8379717 574627..575250 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: esa:ESA_02492 hypothetical protein; TetR family transcriptional regulator 575250 8379717 Jden_0532 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160499.1 574627 D 471856 CDS YP_003160500.1 256831773 8379718 575260..576216 1 NC_013174.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mxa:MXAN_3531 putative O-succinylbenzoic acid synthase; mandelate racemase/muconate lactonizing protein 576216 8379718 Jden_0533 Jonesia denitrificans DSM 20603 mandelate racemase/muconate lactonizing protein YP_003160500.1 575260 D 471856 CDS YP_003160501.1 256831774 8379719 576232..578061 1 NC_013174.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; KEGG: bsu:BSU30820 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate synthase/2- oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase 578061 8379719 Jden_0534 Jonesia denitrificans DSM 20603 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase YP_003160501.1 576232 D 471856 CDS YP_003160502.1 256831775 8379720 578180..579589 1 NC_013174.1 KEGG: rlt:Rleg2_2539 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; Peptidase S7 flavivirus helicase (NS3); PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; 2-alkenal reductase 579589 8379720 Jden_0535 Jonesia denitrificans DSM 20603 2-alkenal reductase YP_003160502.1 578180 D 471856 CDS YP_003160503.1 256831776 8379721 complement(579622..581031) 1 NC_013174.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: scl:sce5042 hypothetical protein; isochorismate synthase 581031 8379721 Jden_0536 Jonesia denitrificans DSM 20603 isochorismate synthase YP_003160503.1 579622 R 471856 CDS YP_003160504.1 256831777 8379722 581032..581739 1 NC_013174.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: csa:Csal_0597 2-octaprenyl-6-methoxy-1,4- benzoquinone methylase / demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 581739 8379722 Jden_0537 Jonesia denitrificans DSM 20603 ubiquinone/menaquinone biosynthesis methyltransferase YP_003160504.1 581032 D 471856 CDS YP_003160505.1 256831778 8379723 complement(581860..583200) 1 NC_013174.1 PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: mxa:MXAN_4837 endoglucanase; glycoside hydrolase family protein 583200 8379723 Jden_0538 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160505.1 581860 R 471856 CDS YP_003160506.1 256831779 8379724 583928..584290 1 NC_013174.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: glo:Glov_3138 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 584290 8379724 Jden_0539 Jonesia denitrificans DSM 20603 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003160506.1 583928 D 471856 CDS YP_003160507.1 256831780 8379725 584312..584863 1 NC_013174.1 KEGG: aba:Acid345_2252 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 584863 8379725 Jden_0540 Jonesia denitrificans DSM 20603 NADH-quinone oxidoreductase subunit B YP_003160507.1 584312 D 471856 CDS YP_003160508.1 256831781 8379726 584860..585579 1 NC_013174.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rpe:RPE_2521 NADH dehydrogenase subunit C; NADH (or F420H2) dehydrogenase subunit C 585579 8379726 Jden_0541 Jonesia denitrificans DSM 20603 NADH (or F420H2) dehydrogenase subunit C YP_003160508.1 584860 D 471856 CDS YP_003160509.1 256831782 8379727 585576..586916 1 NC_013174.1 KEGG: sus:Acid_0111 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D 586916 8379727 Jden_0542 Jonesia denitrificans DSM 20603 NADH dehydrogenase I subunit D YP_003160509.1 585576 D 471856 CDS YP_003160510.1 256831783 8379728 586913..587722 1 NC_013174.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aba:Acid345_1312 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 587722 8379728 Jden_0543 Jonesia denitrificans DSM 20603 NADH-quinone oxidoreductase subunit E YP_003160510.1 586913 D 471856 CDS YP_003160511.1 256831784 8379729 587719..589065 1 NC_013174.1 KEGG: ret:RHE_CH03741 NADH-ubiquinone oxidoreductase chain F protein; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 589065 8379729 Jden_0544 Jonesia denitrificans DSM 20603 NADH-quinone oxidoreductase subunit F YP_003160511.1 587719 D 471856 CDS YP_003160512.1 256831785 8379730 589062..591650 1 NC_013174.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; molydopterin dinucleotide-binding region; KEGG: ret:RHE_CH03742 NADH-ubiquinone oxidoreductase chain G protein; NADH-quinone oxidoreductase subunit G 591650 8379730 Jden_0545 Jonesia denitrificans DSM 20603 NADH-quinone oxidoreductase subunit G YP_003160512.1 589062 D 471856 CDS YP_003160513.1 256831786 8379731 591650..592987 1 NC_013174.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: aba:Acid345_1308 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 592987 8379731 Jden_0546 Jonesia denitrificans DSM 20603 NADH dehydrogenase (quinone) YP_003160513.1 591650 D 471856 CDS YP_003160514.1 256831787 8379732 593037..593717 1 NC_013174.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_3879 NADH-quinone oxidoreductase, chain I; NADH-quinone oxidoreductase subunit I 593717 8379732 Jden_0547 Jonesia denitrificans DSM 20603 NADH-quinone oxidoreductase subunit I YP_003160514.1 593037 D 471856 CDS YP_003160515.1 256831788 8379733 593714..594562 1 NC_013174.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: aeh:Mlg_1961 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 594562 8379733 Jden_0548 Jonesia denitrificans DSM 20603 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003160515.1 593714 D 471856 CDS YP_003160516.1 256831789 8379734 594562..594861 1 NC_013174.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gur:Gura_4234 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 594861 8379734 Jden_0549 Jonesia denitrificans DSM 20603 NADH-ubiquinone oxidoreductase chain 4L YP_003160516.1 594562 D 471856 CDS YP_003160517.1 256831790 8379735 594878..596788 1 NC_013174.1 KEGG: bba:Bd3888 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 596788 8379735 Jden_0550 Jonesia denitrificans DSM 20603 proton-translocating NADH-quinone oxidoreductase subunit L YP_003160517.1 594878 D 471856 CDS YP_003160518.1 256831791 8379736 596801..598324 1 NC_013174.1 KEGG: ank:AnaeK_0442 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 598324 8379736 Jden_0551 Jonesia denitrificans DSM 20603 proton-translocating NADH-quinone oxidoreductase subunit M YP_003160518.1 596801 D 471856 CDS YP_003160519.1 256831792 8379737 598324..600111 1 NC_013174.1 KEGG: gbm:Gbem_3913 proton-translocating NADH- quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N 600111 8379737 Jden_0552 Jonesia denitrificans DSM 20603 proton-translocating NADH-quinone oxidoreductase, chain N YP_003160519.1 598324 D 471856 CDS YP_003160520.1 256831793 8379738 600247..601257 1 NC_013174.1 PFAM: Polyprenyl synthetase; KEGG: hne:HNE_0678 polyprenyl synthetase; polyprenyl synthetase 601257 8379738 Jden_0553 Jonesia denitrificans DSM 20603 polyprenyl synthetase YP_003160520.1 600247 D 471856 CDS YP_003160521.1 256831794 8379739 601434..602567 1 NC_013174.1 PFAM: Forkhead-associated protein; forkhead-associated protein 602567 8379739 Jden_0554 Jonesia denitrificans DSM 20603 forkhead-associated protein YP_003160521.1 601434 D 471856 CDS YP_003160522.1 256831795 8379740 602742..603446 1 NC_013174.1 hypothetical protein 603446 8379740 Jden_0555 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160522.1 602742 D 471856 CDS YP_003160523.1 256831796 8379741 603465..603962 1 NC_013174.1 KEGG: bph:Bphy_0958 alcohol dehydrogenase; hypothetical protein 603962 8379741 Jden_0556 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160523.1 603465 D 471856 CDS YP_003160524.1 256831797 8379742 604119..605510 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin--NADP(+) reductase 605510 8379742 Jden_0557 Jonesia denitrificans DSM 20603 ferredoxin--NADP(+) reductase YP_003160524.1 604119 D 471856 CDS YP_003160525.1 256831798 8379743 605654..606511 1 NC_013174.1 PFAM: peptidase M48 Ste24p; KEGG: bxe:Bxe_A4413 heat shock protein HtpX; peptidase M48 Ste24p 606511 8379743 Jden_0558 Jonesia denitrificans DSM 20603 peptidase M48 Ste24p YP_003160525.1 605654 D 471856 CDS YP_003160526.1 256831799 8379744 606555..607799 1 NC_013174.1 hypothetical protein 607799 8379744 Jden_0559 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160526.1 606555 D 471856 CDS YP_003160527.1 256831800 8379745 complement(607806..608603) 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: bsu:BSU11140 hypothetical protein; HAD-superfamily hydrolase 608603 8379745 Jden_0560 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003160527.1 607806 R 471856 CDS YP_003160528.1 256831801 8379746 complement(608607..609104) 1 NC_013174.1 PFAM: protein of unknown function DUF520; KEGG: bha:BH2387 nucleotide-binding protein; hypothetical protein 609104 8379746 Jden_0561 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160528.1 608607 R 471856 CDS YP_003160529.1 256831802 8381742 610171..610653 1 NC_013174.1 KEGG: swi:Swit_1609 hypothetical protein; hypothetical protein 610653 8381742 Jden_0562 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160529.1 610171 D 471856 CDS YP_003160530.1 256831803 8379748 610650..611084 1 NC_013174.1 PFAM: MaoC domain protein dehydratase; KEGG: vei:Veis_2940 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 611084 8379748 Jden_0563 Jonesia denitrificans DSM 20603 MaoC domain-containing protein dehydratase YP_003160530.1 610650 D 471856 CDS YP_003160531.1 256831804 8379749 complement(611139..612383) 1 NC_013174.1 SMART: regulatory protein LacI; KEGG: gox:GOX0577 transcriptional regulator; transcriptional regulator, LacI family 612383 8379749 Jden_0564 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160531.1 611139 R 471856 CDS YP_003160532.1 256831805 8379750 612527..613858 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_00876 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 613858 8379750 Jden_0565 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160532.1 612527 D 471856 CDS YP_003160533.1 256831806 8379751 613855..615132 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0751 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 615132 8379751 Jden_0566 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160533.1 613855 D 471856 CDS YP_003160534.1 256831807 8379752 615142..616404 1 NC_013174.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; KEGG: scl:sce7823 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylmuramate dehydrogenase 616404 8379752 Jden_0567 Jonesia denitrificans DSM 20603 UDP-N-acetylmuramate dehydrogenase YP_003160534.1 615142 D 471856 CDS YP_003160535.1 256831808 8379753 616466..617872 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2937 major facilitator superfamily transporter; major facilitator superfamily protein 617872 8379753 Jden_0568 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160535.1 616466 D 471856 CDS YP_003160536.1 256831809 8379754 617869..618933 1 NC_013174.1 KEGG: aci:ACIAD2016 hypothetical protein; hypothetical protein 618933 8379754 Jden_0569 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160536.1 617869 D 471856 CDS YP_003160537.1 256831810 8379755 618920..619279 1 NC_013174.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bmj:BMULJ_04556 DNA-binding protein; GntR family transcriptional regulator 619279 8379755 Jden_0570 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003160537.1 618920 D 471856 CDS YP_003160538.1 256831811 8379756 619360..620223 1 NC_013174.1 PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein; metal-dependent protein hydrolase 620223 8379756 Jden_0571 Jonesia denitrificans DSM 20603 metal-dependent protein hydrolase YP_003160538.1 619360 D 471856 CDS YP_003160539.1 256831812 8379757 complement(620288..621355) 1 NC_013174.1 KEGG: rsq:Rsph17025_0278 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 621355 8379757 Jden_0572 Jonesia denitrificans DSM 20603 adenosine deaminase YP_003160539.1 620288 R 471856 CDS YP_003160540.1 256831813 8379758 621438..621941 1 NC_013174.1 KEGG: tmz:Tmz1t_0141 protoporphyrinogen oxidase; protoporphyrinogen oxidase 621941 8379758 Jden_0573 Jonesia denitrificans DSM 20603 protoporphyrinogen oxidase YP_003160540.1 621438 D 471856 CDS YP_003160541.1 256831814 8381744 622398..622688 1 NC_013174.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: rru:Rru_A2701 preprotein translocase subunit SecE; Preprotein translocase subunit SecE 622688 8381744 Jden_0574 Jonesia denitrificans DSM 20603 Preprotein translocase subunit SecE YP_003160541.1 622398 D 471856 CDS YP_003160542.1 256831815 8379760 622849..623670 1 NC_013174.1 KEGG: bha:BH0118 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein; NusG antitermination factor 623670 8379760 Jden_0575 Jonesia denitrificans DSM 20603 NusG antitermination factor YP_003160542.1 622849 D 471856 CDS YP_003160543.1 256831816 8379761 623802..624233 1 NC_013174.1 KEGG: tcx:Tcr_0284 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 624233 8379761 Jden_0576 Jonesia denitrificans DSM 20603 50S ribosomal protein L11 YP_003160543.1 623802 D 471856 CDS YP_003160544.1 256831817 8379762 624311..625021 1 NC_013174.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: bcy:Bcer98_0092 50S ribosomal protein L1; 50S ribosomal protein L1 625021 8379762 Jden_0577 Jonesia denitrificans DSM 20603 50S ribosomal protein L1 YP_003160544.1 624311 D 471856 CDS YP_003160545.1 256831818 8379763 625284..625922 1 NC_013174.1 PFAM: ribosomal protein L10; KEGG: mgm:Mmc1_0838 LSU ribosomal protein L10P; 50S ribosomal protein L10 625922 8379763 Jden_0578 Jonesia denitrificans DSM 20603 50S ribosomal protein L10 YP_003160545.1 625284 D 471856 CDS YP_003160546.1 256831819 8379764 625995..626381 1 NC_013174.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: mgm:Mmc1_0839 LSU ribosomal protein L12P; 50S ribosomal protein L7/L12 626381 8379764 Jden_0579 Jonesia denitrificans DSM 20603 50S ribosomal protein L7/L12 YP_003160546.1 625995 D 471856 CDS YP_003160547.1 256831820 8379765 626830..630342 1 NC_013174.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: bha:BH0126 DNA-directed RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta 630342 8379765 Jden_0580 Jonesia denitrificans DSM 20603 DNA-directed RNA polymerase subunit beta YP_003160547.1 626830 D 471856 CDS YP_003160548.1 256831821 8379766 630466..634338 1 NC_013174.1 KEGG: bha:BH0127 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 634338 8379766 Jden_0581 Jonesia denitrificans DSM 20603 DNA-directed RNA polymerase subunit beta' YP_003160548.1 630466 D 471856 CDS YP_003160549.1 256831822 8379767 634855..635229 1 NC_013174.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: pca:Pcar_0696 30S ribosomal protein S12; 30S ribosomal protein S12 635229 8379767 Jden_0582 Jonesia denitrificans DSM 20603 30S ribosomal protein S12 YP_003160549.1 634855 D 471856 CDS YP_003160550.1 256831823 8379768 635231..635701 1 NC_013174.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bha:BH0130 30S ribosomal protein S7; 30S ribosomal protein S7 635701 8379768 Jden_0583 Jonesia denitrificans DSM 20603 30S ribosomal protein S7 YP_003160550.1 635231 D 471856 CDS YP_003160551.1 256831824 8379769 635792..637891 1 NC_013174.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: nis:NIS_0272 elongation factor G; translation elongation factor G 637891 8379769 Jden_0584 Jonesia denitrificans DSM 20603 translation elongation factor G YP_003160551.1 635792 D 471856 CDS YP_003160552.1 256831825 8379770 638022..639212 1 NC_013174.1 KEGG: fph:Fphi_1039 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; translation elongation factor Tu 639212 8379770 Jden_0585 Jonesia denitrificans DSM 20603 translation elongation factor Tu YP_003160552.1 638022 D 471856 CDS YP_003160553.1 256831826 8379771 639704..640012 1 NC_013174.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bcu:BCAH820_0121 ribosomal protein S10; 30S ribosomal protein S10 640012 8379771 Jden_0586 Jonesia denitrificans DSM 20603 30S ribosomal protein S10 YP_003160553.1 639704 D 471856 CDS YP_003160554.1 256831827 8379772 640032..640691 1 NC_013174.1 PFAM: ribosomal protein L3; KEGG: sat:SYN_00985 50S ribosomal protein L3P; 50S ribosomal protein L3 640691 8379772 Jden_0587 Jonesia denitrificans DSM 20603 50S ribosomal protein L3 YP_003160554.1 640032 D 471856 CDS YP_003160555.1 256831828 8379773 640696..641382 1 NC_013174.1 PFAM: ribosomal protein L4/L1e; KEGG: bha:BH0135 50S ribosomal protein L4; 50S ribosomal protein L4 641382 8379773 Jden_0588 Jonesia denitrificans DSM 20603 50S ribosomal protein L4 YP_003160555.1 640696 D 471856 CDS YP_003160556.1 256831829 8379774 641379..641681 1 NC_013174.1 PFAM: Ribosomal protein L25/L23; KEGG: bja:bll5398 50S ribosomal protein L23; 50S ribosomal protein L25 641681 8379774 Jden_0589 Jonesia denitrificans DSM 20603 50S ribosomal protein L25 YP_003160556.1 641379 D 471856 CDS YP_003160557.1 256831830 8379775 641715..642551 1 NC_013174.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: dvu:DVU1306 50S ribosomal protein L2; 50S ribosomal protein L2 642551 8379775 Jden_0590 Jonesia denitrificans DSM 20603 50S ribosomal protein L2 YP_003160557.1 641715 D 471856 CDS YP_003160558.1 256831831 8379776 642567..642848 1 NC_013174.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bsu:BSU01200 30S ribosomal protein S19; 30S ribosomal protein S19 642848 8379776 Jden_0591 Jonesia denitrificans DSM 20603 30S ribosomal protein S19 YP_003160558.1 642567 D 471856 CDS YP_003160559.1 256831832 8379777 642897..643265 1 NC_013174.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bsu:BSU01210 50S ribosomal protein L22; 50S ribosomal protein L22 643265 8379777 Jden_0592 Jonesia denitrificans DSM 20603 50S ribosomal protein L22 YP_003160559.1 642897 D 471856 CDS YP_003160560.1 256831833 8379778 643265..644080 1 NC_013174.1 KEGG: cak:Caul_1620 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 644080 8379778 Jden_0593 Jonesia denitrificans DSM 20603 30S ribosomal protein S3 YP_003160560.1 643265 D 471856 CDS YP_003160561.1 256831834 8379779 644085..644504 1 NC_013174.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: bha:BH0141 50S ribosomal protein L16; 50S ribosomal protein L16 644504 8379779 Jden_0594 Jonesia denitrificans DSM 20603 50S ribosomal protein L16 YP_003160561.1 644085 D 471856 CDS YP_003160562.1 256831835 8379780 644504..644743 1 NC_013174.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: hne:HNE_2843 ribosomal protein L29; 50S ribosomal protein L29 644743 8379780 Jden_0595 Jonesia denitrificans DSM 20603 50S ribosomal protein L29 YP_003160562.1 644504 D 471856 CDS YP_003160563.1 256831836 8379781 644751..645023 1 NC_013174.1 PFAM: ribosomal protein S17; KEGG: bsu:BSU01250 30S ribosomal protein S17; 30S ribosomal protein S17 645023 8379781 Jden_0596 Jonesia denitrificans DSM 20603 30S ribosomal protein S17 YP_003160563.1 644751 D 471856 CDS YP_003160564.1 256831837 8379782 645160..645528 1 NC_013174.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: bcu:BCAH820_0132 ribosomal protein L14; 50S ribosomal protein L14 645528 8379782 Jden_0597 Jonesia denitrificans DSM 20603 50S ribosomal protein L14 YP_003160564.1 645160 D 471856 CDS YP_003160565.1 256831838 8379783 645531..645881 1 NC_013174.1 KEGG: ilo:IL1905 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; 50S ribosomal protein L24 645881 8379783 Jden_0598 Jonesia denitrificans DSM 20603 50S ribosomal protein L24 YP_003160565.1 645531 D 471856 CDS YP_003160566.1 256831839 8379784 645881..646444 1 NC_013174.1 PFAM: ribosomal protein L5; KEGG: abb:ABBFA_000444 ribosomal L5P family C- terminus family protein; 50S ribosomal protein L5 646444 8379784 Jden_0599 Jonesia denitrificans DSM 20603 50S ribosomal protein L5 YP_003160566.1 645881 D 471856 CDS YP_003160567.1 256831840 8379785 646446..646631 1 NC_013174.1 PFAM: ribosomal protein S14; KEGG: rpsN; 30S ribosomal protein S14; 30S ribosomal protein S14 646631 8379785 Jden_0600 Jonesia denitrificans DSM 20603 30S ribosomal protein S14 YP_003160567.1 646446 D 471856 CDS YP_003160568.1 256831841 8379786 646706..647104 1 NC_013174.1 PFAM: ribosomal protein S8; KEGG: bha:BH0148 30S ribosomal protein S8; 30S ribosomal protein S8 647104 8379786 Jden_0601 Jonesia denitrificans DSM 20603 30S ribosomal protein S8 YP_003160568.1 646706 D 471856 CDS YP_003160569.1 256831842 8379787 647126..647665 1 NC_013174.1 PFAM: ribosomal protein L6; KEGG: bha:BH0149 50S ribosomal protein L6; 50S ribosomal protein L6 647665 8379787 Jden_0602 Jonesia denitrificans DSM 20603 50S ribosomal protein L6 YP_003160569.1 647126 D 471856 CDS YP_003160570.1 256831843 8379788 647668..648039 1 NC_013174.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: mxa:MXAN_3315 ribosomal protein L18; 50S ribosomal protein L18 648039 8379788 Jden_0603 Jonesia denitrificans DSM 20603 50S ribosomal protein L18 YP_003160570.1 647668 D 471856 CDS YP_003160571.1 256831844 8379789 648074..648730 1 NC_013174.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: slo:Shew_0175 30S ribosomal protein S5; 30S ribosomal protein S5 648730 8379789 Jden_0604 Jonesia denitrificans DSM 20603 30S ribosomal protein S5 YP_003160571.1 648074 D 471856 CDS YP_003160572.1 256831845 8379790 648730..648912 1 NC_013174.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: gbe:GbCGDNIH1_0572 LSU ribosomal protein L30P; 50S ribosomal protein L30 648912 8379790 Jden_0605 Jonesia denitrificans DSM 20603 50S ribosomal protein L30 YP_003160572.1 648730 D 471856 CDS YP_003160573.1 256831846 8379791 648915..649391 1 NC_013174.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: cak:Caul_1633 ribosomal protein L15; 50S ribosomal protein L15 649391 8379791 Jden_0606 Jonesia denitrificans DSM 20603 50S ribosomal protein L15 YP_003160573.1 648915 D 471856 CDS YP_003160574.1 256831847 8379792 649700..650989 1 NC_013174.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY; preprotein translocase subunit SecY 650989 8379792 Jden_0607 Jonesia denitrificans DSM 20603 preprotein translocase subunit SecY YP_003160574.1 649700 D 471856 CDS YP_003160575.1 256831848 8379793 650986..651573 1 NC_013174.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: sml:Smlt3886 putative adenylate kinase (fragment); adenylate kinase 651573 8379793 Jden_0608 Jonesia denitrificans DSM 20603 adenylate kinase YP_003160575.1 650986 D 471856 CDS YP_003160576.1 256831849 8379794 651831..652052 1 NC_013174.1 KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 652052 8379794 Jden_0609 Jonesia denitrificans DSM 20603 translation initiation factor IF-1 YP_003160576.1 651831 D 471856 CDS YP_003160577.1 256831850 8379795 652105..652218 1 NC_013174.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aba:Acid345_1250 LSU ribosomal protein L36P; 50S ribosomal protein L36 652218 8379795 Jden_0610 Jonesia denitrificans DSM 20603 50S ribosomal protein L36 YP_003160577.1 652105 D 471856 CDS YP_003160578.1 256831851 8379796 652424..652798 1 NC_013174.1 PFAM: ribosomal protein S13; KEGG: gsu:GSU2834 30S ribosomal protein S13; 30S ribosomal protein S13 652798 8379796 Jden_0611 Jonesia denitrificans DSM 20603 30S ribosomal protein S13 YP_003160578.1 652424 D 471856 CDS YP_003160579.1 256831852 8379797 652870..653277 1 NC_013174.1 PFAM: ribosomal protein S11; KEGG: dal:Dalk_1891 ribosomal protein S11; 30S ribosomal protein S11 653277 8379797 Jden_0612 Jonesia denitrificans DSM 20603 30S ribosomal protein S11 YP_003160579.1 652870 D 471856 CDS YP_003160580.1 256831853 8379798 653417..654421 1 NC_013174.1 KEGG: bcu:BCAH820_0150 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 654421 8379798 Jden_0613 Jonesia denitrificans DSM 20603 DNA-directed RNA polymerase subunit alpha YP_003160580.1 653417 D 471856 CDS YP_003160581.1 256831854 8379799 654473..655018 1 NC_013174.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: gur:Gura_1093 50S ribosomal protein L17; 50S ribosomal protein L17 655018 8379799 Jden_0614 Jonesia denitrificans DSM 20603 50S ribosomal protein L17 YP_003160581.1 654473 D 471856 CDS YP_003160582.1 256831855 8379800 655043..655975 1 NC_013174.1 KEGG: psa:PST_1778 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 655975 8379800 Jden_0615 Jonesia denitrificans DSM 20603 tRNA pseudouridine synthase A YP_003160582.1 655043 D 471856 CDS YP_003160583.1 256831856 8379801 656022..656936 1 NC_013174.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bsu:BSU02330 hypothetical protein; rhodanese domain-containing protein 656936 8379801 Jden_0616 Jonesia denitrificans DSM 20603 rhodanese domain-containing protein YP_003160583.1 656022 D 471856 CDS YP_003160584.1 256831857 8379802 657234..657677 1 NC_013174.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: azo:azo2760 50S ribosomal protein L13; 50S ribosomal protein L13 657677 8379802 Jden_0617 Jonesia denitrificans DSM 20603 50S ribosomal protein L13 YP_003160584.1 657234 D 471856 CDS YP_003160585.1 256831858 8379803 657718..658209 1 NC_013174.1 PFAM: ribosomal protein S9; KEGG: mgm:Mmc1_0247 SSU ribosomal protein S9P; 30S ribosomal protein S9 658209 8379803 Jden_0618 Jonesia denitrificans DSM 20603 30S ribosomal protein S9 YP_003160585.1 657718 D 471856 CDS YP_003160586.1 256831859 8379804 658445..659797 1 NC_013174.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcu:BCAH820_0180 phosphoglucosamine mutase; phosphoglucosamine mutase 659797 8379804 Jden_0619 Jonesia denitrificans DSM 20603 phosphoglucosamine mutase YP_003160586.1 658445 D 471856 CDS YP_003160587.1 256831860 8379805 659817..660554 1 NC_013174.1 PFAM: formylmethionine deformylase; KEGG: aba:Acid345_3916 peptide deformylase; Peptide deformylase 660554 8379805 Jden_0620 Jonesia denitrificans DSM 20603 Peptide deformylase YP_003160587.1 659817 D 471856 CDS YP_003160588.1 256831861 8379806 660542..661258 1 NC_013174.1 KEGG: abb:ABBFA_003391 protein DedA (protein DSG-1); putative membrane-associated protein 661258 8379806 Jden_0621 Jonesia denitrificans DSM 20603 putative membrane-associated protein YP_003160588.1 660542 D 471856 CDS YP_003160589.1 256831862 8379807 complement(661280..662254) 1 NC_013174.1 TIGRFAM: pantothenate kinase; KEGG: met:M446_6788 pantothenate kinase; pantothenate kinase 662254 8379807 Jden_0622 Jonesia denitrificans DSM 20603 pantothenate kinase YP_003160589.1 661280 R 471856 CDS YP_003160590.1 256831863 8379808 662471..664336 1 NC_013174.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: aba:Acid345_0997 glutamine--fructose-6- phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 664336 8379808 Jden_0623 Jonesia denitrificans DSM 20603 glucosamine/fructose-6-phosphate aminotransferase YP_003160590.1 662471 D 471856 CDS YP_003160591.1 256831864 8379809 664342..664692 1 NC_013174.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: ade:Adeh_1501 holo-(acyl-carrier-protein) synthase; 4'-phosphopantetheinyl transferase 664692 8379809 Jden_0624 Jonesia denitrificans DSM 20603 4'-phosphopantetheinyl transferase YP_003160591.1 664342 D 471856 CDS YP_003160592.1 256831865 8379810 complement(664735..665733) 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like; luciferase-like monooxygenase 665733 8379810 Jden_0625 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003160592.1 664735 R 471856 CDS YP_003160593.1 256831866 8379811 665776..667356 1 NC_013174.1 PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: rpd:RPD_2899 hypothetical protein; hypothetical protein 667356 8379811 Jden_0626 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160593.1 665776 D 471856 CDS YP_003160594.1 256831867 8379812 667628..668860 1 NC_013174.1 KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 668860 8379812 Jden_0627 Jonesia denitrificans DSM 20603 alanine racemase YP_003160594.1 667628 D 471856 CDS YP_003160595.1 256831868 8379813 668869..669414 1 NC_013174.1 PFAM: protein of unknown function UPF0079; KEGG: ccs:CCNA_03648 ATP/GTP hydrolase; hypothetical protein 669414 8379813 Jden_0628 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160595.1 668869 D 471856 CDS YP_003160596.1 256831869 8379814 669417..670106 1 NC_013174.1 PFAM: peptidase M22 glycoprotease; KEGG: rpc:RPC_0464 peptidase M22, glycoprotease; peptidase M22 glycoprotease 670106 8379814 Jden_0629 Jonesia denitrificans DSM 20603 peptidase M22 glycoprotease YP_003160596.1 669417 D 471856 CDS YP_003160597.1 256831870 8379815 670103..670669 1 NC_013174.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: glo:Glov_2306 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 670669 8379815 Jden_0630 Jonesia denitrificans DSM 20603 ribosomal-protein-alanine acetyltransferase YP_003160597.1 670103 D 471856 CDS YP_003160598.1 256831871 8379816 670666..671583 1 NC_013174.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bpt:Bpet3067 thiosulfate sulfurtransferase; rhodanese domain-containing protein 671583 8379816 Jden_0631 Jonesia denitrificans DSM 20603 rhodanese domain-containing protein YP_003160598.1 670666 D 471856 CDS YP_003160599.1 256831872 8379817 671615..672658 1 NC_013174.1 KEGG: bcb:BCB4264_A0292 putative O- sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 672658 8379817 Jden_0632 Jonesia denitrificans DSM 20603 glycoprotease family metalloendopeptidase YP_003160599.1 671615 D 471856 CDS YP_003160600.1 256831873 8379818 complement(672680..673819) 1 NC_013174.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: bba:Bd2263 hypothetical protein; glutamate--cysteine ligase 673819 8379818 Jden_0633 Jonesia denitrificans DSM 20603 glutamate--cysteine ligase YP_003160600.1 672680 R 471856 CDS YP_003160601.1 256831874 8379819 complement(673829..675067) 1 NC_013174.1 hypothetical protein 675067 8379819 Jden_0634 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160601.1 673829 R 471856 CDS YP_003160602.1 256831875 8379820 675213..675506 1 NC_013174.1 PFAM: chaperonin Cpn10; KEGG: sat:SYN_00062 co-chaperonin; chaperonin Cpn10 675506 8379820 Jden_0635 Jonesia denitrificans DSM 20603 chaperonin Cpn10 YP_003160602.1 675213 D 471856 CDS YP_003160603.1 256831876 8379821 complement(675663..675971) 1 NC_013174.1 PFAM: transcription factor WhiB; transcription factor WhiB 675971 8379821 Jden_0636 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003160603.1 675663 R 471856 CDS YP_003160604.1 256831877 8379822 676569..677768 1 NC_013174.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kpe:KPK_3793 transcriptional regulator MlrA; transcriptional regulator, MerR family 677768 8379822 Jden_0637 Jonesia denitrificans DSM 20603 transcriptional regulator, MerR family YP_003160604.1 676569 D 471856 CDS YP_003160605.1 256831878 8379823 677870..679384 1 NC_013174.1 KEGG: bha:BH0020 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 679384 8379823 Jden_0638 Jonesia denitrificans DSM 20603 inosine-5'-monophosphate dehydrogenase YP_003160605.1 677870 D 471856 CDS YP_003160606.1 256831879 8379824 679434..680522 1 NC_013174.1 PFAM: pseudouridine synthase; KEGG: pseudouridine synthase; pseudouridine synthase 680522 8379824 Jden_0639 Jonesia denitrificans DSM 20603 pseudouridine synthase YP_003160606.1 679434 D 471856 CDS YP_003160607.1 256831880 8379825 complement(680478..681194) 1 NC_013174.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce7572 DNA polymerase III, epsilon subunit; Exonuclease RNase T and DNA polymerase III 681194 8379825 Jden_0640 Jonesia denitrificans DSM 20603 Exonuclease RNase T and DNA polymerase III YP_003160607.1 680478 R 471856 CDS YP_003160608.1 256831881 8379826 681353..682498 1 NC_013174.1 TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; KEGG: inosine-5-monophosphate dehydrogenase; K00088 IMP dehydrogenase; IMP dehydrogenase family protein 682498 8379826 Jden_0641 Jonesia denitrificans DSM 20603 IMP dehydrogenase family protein YP_003160608.1 681353 D 471856 CDS YP_003160609.1 256831882 8379827 complement(682613..683812) 1 NC_013174.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dps:DP0559 acetate kinase; acetate kinase 683812 8379827 Jden_0642 Jonesia denitrificans DSM 20603 acetate kinase YP_003160609.1 682613 R 471856 CDS YP_003160610.1 256831883 8379828 complement(683848..685947) 1 NC_013174.1 KEGG: net:Neut_1995 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase 685947 8379828 Jden_0643 Jonesia denitrificans DSM 20603 phosphate acetyltransferase YP_003160610.1 683848 R 471856 CDS YP_003160611.1 256831884 8379829 686063..686320 1 NC_013174.1 hypothetical protein 686320 8379829 Jden_0644 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160611.1 686063 D 471856 CDS YP_003160612.1 256831885 8379830 686330..687265 1 NC_013174.1 KEGG: reu:Reut_A0320 putative transmembrane cytochrome oxidase; hypothetical protein 687265 8379830 Jden_0645 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160612.1 686330 D 471856 CDS YP_003160613.1 256831886 8379831 complement(687274..689061) 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hch:HCH_00144 ABC-type multidrug transport system, ATPase and permease components; ABC transporter 689061 8379831 Jden_0646 Jonesia denitrificans DSM 20603 ABC transporter YP_003160613.1 687274 R 471856 CDS YP_003160614.1 256831887 8379832 complement(689048..690817) 1 NC_013174.1 PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: bha:BH2336 ABC transporter ATP-binding protein; ABC transporter permease 690817 8379832 Jden_0647 Jonesia denitrificans DSM 20603 ABC transporter permease YP_003160614.1 689048 R 471856 CDS YP_003160615.1 256831888 8379833 690878..691267 1 NC_013174.1 KEGG: mxa:MXAN_7409 hypothetical protein; hypothetical protein 691267 8379833 Jden_0648 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160615.1 690878 D 471856 CDS YP_003160616.1 256831889 8379834 691273..691926 1 NC_013174.1 hypothetical protein 691926 8379834 Jden_0649 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160616.1 691273 D 471856 CDS YP_003160617.1 256831890 8379835 691933..693537 1 NC_013174.1 KEGG: bha:BH0607 bifunctional GMP synthase/glutamine amidotransferase protein; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; GMP synthase 693537 8379835 Jden_0650 Jonesia denitrificans DSM 20603 GMP synthase YP_003160617.1 691933 D 471856 CDS YP_003160618.1 256831891 8379836 693734..694309 1 NC_013174.1 hypothetical protein 694309 8379836 Jden_0651 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160618.1 693734 D 471856 CDS YP_003160619.1 256831892 8379837 694343..695650 1 NC_013174.1 KEGG: Hypothetical protein CBG02561; hypothetical protein 695650 8379837 Jden_0652 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160619.1 694343 D 471856 CDS YP_003160620.1 256831893 8379838 complement(695647..695913) 1 NC_013174.1 hypothetical protein 695913 8379838 Jden_0653 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160620.1 695647 R 471856 CDS YP_003160621.1 256831894 8379839 complement(695910..697304) 1 NC_013174.1 PFAM: PspC domain protein; KEGG: similar to mucin; phage shock protein C, PspC 697304 8379839 Jden_0654 Jonesia denitrificans DSM 20603 phage shock protein C, PspC YP_003160621.1 695910 R 471856 CDS YP_003160622.1 256831895 8379840 697402..698751 1 NC_013174.1 PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: plu:plu2041 hypothetical protein; putative signal transduction histidine kinase 698751 8379840 Jden_0655 Jonesia denitrificans DSM 20603 putative signal transduction histidine kinase YP_003160622.1 697402 D 471856 CDS YP_003160623.1 256831896 8379841 698748..699404 1 NC_013174.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bph:Bphy_6192 two component LuxR family transcriptional regulator; two component transcriptional regulator, LuxR family 699404 8379841 Jden_0656 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003160623.1 698748 D 471856 CDS YP_003160624.1 256831897 8379842 699493..700185 1 NC_013174.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: scl:sce0245 sirohydrochlorin cobaltochelatase; cobalamin (vitamin B12) biosynthesis CbiX protein 700185 8379842 Jden_0657 Jonesia denitrificans DSM 20603 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003160624.1 699493 D 471856 CDS YP_003160625.1 256831898 8379843 complement(700103..701446) 1 NC_013174.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bpe:BP1055 siroheme synthase; uroporphyrin-III C-methyltransferase 701446 8379843 Jden_0658 Jonesia denitrificans DSM 20603 uroporphyrin-III C-methyltransferase YP_003160625.1 700103 R 471856 CDS YP_003160626.1 256831899 8379844 complement(701468..702772) 1 NC_013174.1 KEGG: ank:AnaeK_2111 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase, large subunit 702772 8379844 Jden_0659 Jonesia denitrificans DSM 20603 sulfate adenylyltransferase, large subunit YP_003160626.1 701468 R 471856 CDS YP_003160627.1 256831900 8379845 complement(702772..703689) 1 NC_013174.1 TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: noc:Noc_2289 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit 703689 8379845 Jden_0660 Jonesia denitrificans DSM 20603 sulfate adenylyltransferase, small subunit YP_003160627.1 702772 R 471856 CDS YP_003160628.1 256831901 8379846 complement(703686..704510) 1 NC_013174.1 TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sal:Sala_0768 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 704510 8379846 Jden_0661 Jonesia denitrificans DSM 20603 phosphoadenosine phosphosulfate reductase YP_003160628.1 703686 R 471856 CDS YP_003160629.1 256831902 8379847 complement(704507..706210) 1 NC_013174.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: aba:Acid345_2373 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; sulfite reductase 706210 8379847 Jden_0662 Jonesia denitrificans DSM 20603 sulfite reductase YP_003160629.1 704507 R 471856 CDS YP_003160630.1 256831903 8379848 706613..706975 1 NC_013174.1 hypothetical protein 706975 8379848 Jden_0663 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160630.1 706613 D 471856 CDS YP_003160631.1 256831904 8379849 706989..707462 1 NC_013174.1 KEGG: mlo:mll2193 hypothetical protein; hypothetical protein 707462 8379849 Jden_0664 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160631.1 706989 D 471856 CDS YP_003160632.1 256831905 8379850 complement(707498..708247) 1 NC_013174.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein; GntR family transcriptional regulator 708247 8379850 Jden_0665 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003160632.1 707498 R 471856 CDS YP_003160633.1 256831906 8379851 708355..709419 1 NC_013174.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bbr:BB2160 putative extracellular solute- binding protein; family 3 extracellular solute-binding protein 709419 8379851 Jden_0666 Jonesia denitrificans DSM 20603 family 3 extracellular solute-binding protein YP_003160633.1 708355 D 471856 CDS YP_003160634.1 256831907 8379852 709398..710153 1 NC_013174.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2161 putative inner membrane component of binding-protein-dependent transport system; ectoine/hydroxyectoine ABC transporter, permease protein EhuC 710153 8379852 Jden_0667 Jonesia denitrificans DSM 20603 ectoine/hydroxyectoine ABC transporter, permease protein EhuC YP_003160634.1 709398 D 471856 CDS YP_003160635.1 256831908 8379853 710150..710806 1 NC_013174.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5517 ectoine/hydroxyectoine ABC transporter, permease protein EhuD; ectoine/hydroxyectoine ABC transporter, permease protein EhuD 710806 8379853 Jden_0668 Jonesia denitrificans DSM 20603 ectoine/hydroxyectoine ABC transporter, permease protein EhuD YP_003160635.1 710150 D 471856 CDS YP_003160636.1 256831909 8379854 710868..711611 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2156 ABC transporter related; ABC transporter 711611 8379854 Jden_0669 Jonesia denitrificans DSM 20603 ABC transporter YP_003160636.1 710868 D 471856 CDS YP_003160637.1 256831910 8379855 711733..714234 1 NC_013174.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: bcz:BCZK0278 ATP-dependent DNA helicase; ATP-dependent DNA helicase PcrA 714234 8379855 Jden_0670 Jonesia denitrificans DSM 20603 ATP-dependent DNA helicase PcrA YP_003160637.1 711733 D 471856 CDS YP_003160638.1 256831911 8379856 714380..715546 1 NC_013174.1 KEGG: nis:NIS_0838 succinyl-CoA synthase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase, beta subunit 715546 8379856 Jden_0671 Jonesia denitrificans DSM 20603 succinyl-CoA synthetase, beta subunit YP_003160638.1 714380 D 471856 CDS YP_003160639.1 256831912 8379857 715569..716462 1 NC_013174.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: ses:SARI_02209 succinyl-CoA synthetase subunit alpha; succinyl-CoA synthetase, alpha subunit 716462 8379857 Jden_0672 Jonesia denitrificans DSM 20603 succinyl-CoA synthetase, alpha subunit YP_003160639.1 715569 D 471856 CDS YP_003160640.1 256831913 8379858 716683..718284 1 NC_013174.1 PFAM: Cache type 2 domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rce:RC1_0295 methyl-accepting chemotaxis protein, putative; methyl-accepting chemotaxis sensory transducer with Cache sensor 718284 8379858 Jden_0673 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_003160640.1 716683 D 471856 CDS YP_003160641.1 256831914 8379859 complement(718318..720732) 1 NC_013174.1 KEGG: cti:RALTA_B1369 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 720732 8379859 Jden_0674 Jonesia denitrificans DSM 20603 glycogen/starch/alpha-glucan phosphorylase YP_003160641.1 718318 R 471856 CDS YP_003160642.1 256831915 8381748 726573..727955 1 NC_013174.1 KEGG: bcn:Bcen_2056 copper resistance D; hypothetical protein 727955 8381748 Jden_0675 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160642.1 726573 D 471856 CDS YP_003160643.1 256831916 8379861 complement(727952..728455) 1 NC_013174.1 hypothetical protein 728455 8379861 Jden_0676 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160643.1 727952 R 471856 CDS YP_003160644.1 256831917 8379862 728562..729239 1 NC_013174.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pca:Pcar_1292 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 729239 8379862 Jden_0677 Jonesia denitrificans DSM 20603 phosphoribosylglycinamide formyltransferase YP_003160644.1 728562 D 471856 CDS YP_003160645.1 256831918 8379863 729392..730993 1 NC_013174.1 KEGG: acr:Acry_0027 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 730993 8379863 Jden_0678 Jonesia denitrificans DSM 20603 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003160645.1 729392 D 471856 CDS YP_003160646.1 256831919 8379864 complement(731083..732396) 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:H16_B0802 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 732396 8379864 Jden_0679 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003160646.1 731083 R 471856 CDS YP_003160647.1 256831920 8379865 732770..733834 1 NC_013174.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: bha:BH1554 riboflavin specific deaminase; riboflavin biosynthesis protein RibD 733834 8379865 Jden_0680 Jonesia denitrificans DSM 20603 riboflavin biosynthesis protein RibD YP_003160647.1 732770 D 471856 CDS YP_003160648.1 256831921 8379866 733827..734459 1 NC_013174.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: acp:A2cp1_2925 riboflavin synthase, alpha subunit; riboflavin synthase subunit alpha 734459 8379866 Jden_0681 Jonesia denitrificans DSM 20603 riboflavin synthase subunit alpha YP_003160648.1 733827 D 471856 CDS YP_003160649.1 256831922 8379867 734456..735691 1 NC_013174.1 KEGG: gox:GOX0980 3,4-dihydroy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 735691 8379867 Jden_0682 Jonesia denitrificans DSM 20603 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003160649.1 734456 D 471856 CDS YP_003160650.1 256831923 8379868 735701..736174 1 NC_013174.1 KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 736174 8379868 Jden_0683 Jonesia denitrificans DSM 20603 6,7-dimethyl-8-ribityllumazine synthase YP_003160650.1 735701 D 471856 CDS YP_003160651.1 256831924 8379869 736171..736473 1 NC_013174.1 hypothetical protein 736473 8379869 Jden_0684 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160651.1 736171 D 471856 CDS YP_003160652.1 256831925 8379870 736589..737809 1 NC_013174.1 KEGG: bov:BOV_1161 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 737809 8379870 Jden_0685 Jonesia denitrificans DSM 20603 isocitrate dehydrogenase YP_003160652.1 736589 D 471856 CDS YP_003160653.1 256831926 8379871 complement(737865..738608) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: rpc:RPC_2257 TetR family transcriptional regulator; TetR family transcriptional regulator 738608 8379871 Jden_0686 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160653.1 737865 R 471856 CDS YP_003160654.1 256831927 8379872 738736..741576 1 NC_013174.1 TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcr:BCAH187_A1238 phage infection protein; YhgE/Pip C-terminal domain-containing protein 741576 8379872 Jden_0687 Jonesia denitrificans DSM 20603 YhgE/Pip C-terminal domain-containing protein YP_003160654.1 738736 D 471856 CDS YP_003160655.1 256831928 8379873 741696..742679 1 NC_013174.1 TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: hha:Hhal_0830 malate dehydrogenase; malate dehydrogenase 742679 8379873 Jden_0688 Jonesia denitrificans DSM 20603 malate dehydrogenase YP_003160655.1 741696 D 471856 CDS YP_003160656.1 256831929 8379874 742730..744049 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce4550 major facilitator superfamily permease; major facilitator superfamily protein 744049 8379874 Jden_0689 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003160656.1 742730 D 471856 CDS YP_003160657.1 256831930 8379875 complement(744060..744920) 1 NC_013174.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid- binding ACT domain protein; KEGG: formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 744920 8379875 Jden_0690 Jonesia denitrificans DSM 20603 formyltetrahydrofolate deformylase YP_003160657.1 744060 R 471856 CDS YP_003160658.1 256831931 8379876 744990..745472 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_1732 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 745472 8379876 Jden_0691 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160658.1 744990 D 471856 CDS YP_003160659.1 256831932 8379877 complement(745479..746294) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sugar ABC transporter; ABC transporter 746294 8379877 Jden_0692 Jonesia denitrificans DSM 20603 ABC transporter YP_003160659.1 745479 R 471856 CDS YP_003160660.1 256831933 8379878 complement(746291..747499) 1 NC_013174.1 PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon; ROK family protein 747499 8379878 Jden_0693 Jonesia denitrificans DSM 20603 ROK family protein YP_003160660.1 746291 R 471856 CDS YP_003160661.1 256831934 8379879 747800..749089 1 NC_013174.1 PFAM: glycine hydroxymethyltransferase; KEGG: pca:Pcar_1442 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 749089 8379879 Jden_0694 Jonesia denitrificans DSM 20603 glycine hydroxymethyltransferase YP_003160661.1 747800 D 471856 CDS YP_003160662.1 256831935 8379880 749102..749995 1 NC_013174.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pca:Pcar_2461 putative methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 749995 8379880 Jden_0695 Jonesia denitrificans DSM 20603 methenyltetrahydrofolate cyclohydrolase YP_003160662.1 749102 D 471856 CDS YP_003160663.1 256831936 8379881 750002..750139 1 NC_013174.1 hypothetical protein 750139 8379881 Jden_0696 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160663.1 750002 D 471856 CDS YP_003160664.1 256831937 8379882 750319..754839 1 NC_013174.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; Endonuclease/exonuclease/phosphatase; KEGG: rpb:RPB_0803 5'-nucleotidase; 5'-nucleotidase 754839 8379882 Jden_0697 Jonesia denitrificans DSM 20603 5'-nucleotidase YP_003160664.1 750319 D 471856 CDS YP_003160665.1 256831938 8379883 754901..755764 1 NC_013174.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bph:Bphy_0057 exodeoxyribonuclease III Xth; exodeoxyribonuclease III Xth 755764 8379883 Jden_0698 Jonesia denitrificans DSM 20603 exodeoxyribonuclease III Xth YP_003160665.1 754901 D 471856 CDS YP_003160666.1 256831939 8379884 complement(755730..756893) 1 NC_013174.1 PFAM: protein of unknown function DUF59; KEGG: bca:BCE_3578 mrp protein; hypothetical protein 756893 8379884 Jden_0699 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160666.1 755730 R 471856 CDS YP_003160667.1 256831940 8379885 complement(756914..757459) 1 NC_013174.1 PFAM: protein of unknown function DUF1003; KEGG: pfo:Pfl01_4309 hypothetical protein; hypothetical protein 757459 8379885 Jden_0700 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160667.1 756914 R 471856 CDS YP_003160668.1 256831941 8379886 complement(757452..758747) 1 NC_013174.1 PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region; MgtE integral membrane protein 758747 8379886 Jden_0701 Jonesia denitrificans DSM 20603 MgtE integral membrane protein YP_003160668.1 757452 R 471856 CDS YP_003160669.1 256831942 8379887 758813..759700 1 NC_013174.1 KEGG: har:HEAR2359 putative permease; hypothetical protein 759700 8379887 Jden_0702 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160669.1 758813 D 471856 CDS YP_003160670.1 256831943 8379888 complement(759704..761257) 1 NC_013174.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: scl:sce8667 hypothetical protein; peptidase M24 761257 8379888 Jden_0703 Jonesia denitrificans DSM 20603 peptidase M24 YP_003160670.1 759704 R 471856 CDS YP_003160671.1 256831944 8379889 761296..762138 1 NC_013174.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ade:Adeh_2582 phosphoesterase, PHP-like; PHP domain-containing protein 762138 8379889 Jden_0704 Jonesia denitrificans DSM 20603 PHP domain-containing protein YP_003160671.1 761296 D 471856 CDS YP_003160672.1 256831945 8379890 762135..762767 1 NC_013174.1 PFAM: multiple antibiotic resistance (MarC)-related protein; Integral membrane protein TerC; KEGG: sil:SPO2448 MarC membrane protein; multiple antibiotic resistance (MarC)-like protein 762767 8379890 Jden_0705 Jonesia denitrificans DSM 20603 multiple antibiotic resistance (MarC)-like protein YP_003160672.1 762135 D 471856 CDS YP_003160673.1 256831946 8379891 762916..763599 1 NC_013174.1 hypothetical protein 763599 8379891 Jden_0706 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160673.1 762916 D 471856 CDS YP_003160674.1 256831947 8379892 complement(763648..765282) 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: dps:DP1690 ATP-dependent RNA helicase; DEAD/DEAH box helicase 765282 8379892 Jden_0707 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003160674.1 763648 R 471856 CDS YP_003160675.1 256831948 8379893 765486..766202 1 NC_013174.1 hypothetical protein 766202 8379893 Jden_0708 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160675.1 765486 D 471856 CDS YP_003160676.1 256831949 8379894 complement(766259..766483) 1 NC_013174.1 hypothetical protein 766483 8379894 Jden_0709 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160676.1 766259 R 471856 CDS YP_003160677.1 256831950 8379895 complement(766558..767304) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: dsh:Dshi_3038 TetR family transcriptional regulator; TetR family transcriptional regulator 767304 8379895 Jden_0710 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003160677.1 766558 R 471856 CDS YP_003160678.1 256831951 8379896 767420..770599 1 NC_013174.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0599 DNA-dependent helicase II; UvrD/REP helicase 770599 8379896 Jden_0711 Jonesia denitrificans DSM 20603 UvrD/REP helicase YP_003160678.1 767420 D 471856 CDS YP_003160679.1 256831952 8379897 770596..773907 1 NC_013174.1 PFAM: UvrD/REP helicase; KEGG: aba:Acid345_0047 ATP-dependent DNA helicase, Rep family; UvrD/REP helicase 773907 8379897 Jden_0712 Jonesia denitrificans DSM 20603 UvrD/REP helicase YP_003160679.1 770596 D 471856 CDS YP_003160680.1 256831953 8379898 complement(773901..775268) 1 NC_013174.1 PFAM: aminoglycoside phosphotransferase; KEGG: eum:ECUMN_4827 macrolide 2'- phosphotransferase I; aminoglycoside phosphotransferase 775268 8379898 Jden_0713 Jonesia denitrificans DSM 20603 aminoglycoside phosphotransferase YP_003160680.1 773901 R 471856 CDS YP_003160681.1 256831954 8379899 complement(775342..775617) 1 NC_013174.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: gme:Gmet_2959 glutaredoxin-like protein, YruB; glutaredoxin-like protein 775617 8379899 Jden_0714 Jonesia denitrificans DSM 20603 glutaredoxin-like protein YP_003160681.1 775342 R 471856 CDS YP_003160682.1 256831955 8379900 775708..777780 1 NC_013174.1 PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative; UvrD/REP helicase 777780 8379900 Jden_0715 Jonesia denitrificans DSM 20603 UvrD/REP helicase YP_003160682.1 775708 D 471856 CDS YP_003160683.1 256831956 8379901 777899..778039 1 NC_013174.1 hypothetical protein 778039 8379901 Jden_0716 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160683.1 777899 D 471856 CDS YP_003160684.1 256831957 8379902 778211..778600 1 NC_013174.1 PFAM: transcription factor WhiB; HMG-I and HMG-Y DNA-binding domain protein; transcription factor WhiB 778600 8379902 Jden_0717 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003160684.1 778211 D 471856 CDS YP_003160685.1 256831958 8379903 778602..778694 1 NC_013174.1 hypothetical protein 778694 8379903 Jden_0718 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160685.1 778602 D 471856 CDS YP_003160686.1 256831959 8379904 complement(778695..779696) 1 NC_013174.1 hypothetical protein 779696 8379904 Jden_0719 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160686.1 778695 R 471856 CDS YP_003160687.1 256831960 8379905 779838..780458 1 NC_013174.1 PFAM: protein of unknown function DUF45; KEGG: mmr:Mmar10_2107 hypothetical protein; hypothetical protein 780458 8379905 Jden_0720 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160687.1 779838 D 471856 CDS YP_003160688.1 256831961 8379906 complement(780437..781897) 1 NC_013174.1 hypothetical protein 781897 8379906 Jden_0721 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160688.1 780437 R 471856 CDS YP_003160689.1 256831962 8379907 781980..783080 1 NC_013174.1 KEGG: dal:Dalk_1637 NAD-dependent epimerase/dehydratase; hypothetical protein 783080 8379907 Jden_0722 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160689.1 781980 D 471856 CDS YP_003160690.1 256831963 8379908 783183..784259 1 NC_013174.1 KEGG: bsu:BSU15050 hypothetical protein; hypothetical protein 784259 8379908 Jden_0723 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160690.1 783183 D 471856 CDS YP_003160691.1 256831964 8379909 complement(784336..784917) 1 NC_013174.1 hypothetical protein 784917 8379909 Jden_0724 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160691.1 784336 R 471856 CDS YP_003160692.1 256831965 8379910 785071..788127 1 NC_013174.1 PFAM: protein of unknown function UPF0182; KEGG: mno:Mnod_3465 protein of unknown function UPF0182; hypothetical protein 788127 8379910 Jden_0725 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160692.1 785071 D 471856 CDS YP_003160693.1 256831966 8379911 788313..789299 1 NC_013174.1 PFAM: Aldose 1-epimerase; KEGG: atc:AGR_L_1546 hypothetical protein; aldose 1-epimerase 789299 8379911 Jden_0726 Jonesia denitrificans DSM 20603 aldose 1-epimerase YP_003160693.1 788313 D 471856 CDS YP_003160694.1 256831967 8381750 789708..790067 1 NC_013174.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: aeh:Mlg_2713 ArsR family transcriptional regulator; ArsR family transcriptional regulator 790067 8381750 Jden_0727 Jonesia denitrificans DSM 20603 ArsR family transcriptional regulator YP_003160694.1 789708 D 471856 CDS YP_003160695.1 256831968 8379913 790064..791125 1 NC_013174.1 PFAM: permease; KEGG: ank:AnaeK_4014 permease; permease 791125 8379913 Jden_0728 Jonesia denitrificans DSM 20603 permease YP_003160695.1 790064 D 471856 CDS YP_003160696.1 256831969 8379914 791166..791414 1 NC_013174.1 KEGG: tmz:Tmz1t_1856 redox-active disulfide protein 2; redox-active disulfide protein 2 791414 8379914 Jden_0729 Jonesia denitrificans DSM 20603 redox-active disulfide protein 2 YP_003160696.1 791166 D 471856 CDS YP_003160697.1 256831970 8379915 791502..792443 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 792443 8379915 Jden_0730 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160697.1 791502 D 471856 CDS YP_003160698.1 256831971 8379916 complement(792567..795371) 1 NC_013174.1 PFAM: cellulose-binding family II; glycosyl hydrolase BNR repeat-containing protein; SMART: cellulose-binding family II; KEGG: cja:CJA_2477 endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A; cellulose-binding family II protein 795371 8379916 Jden_0731 Jonesia denitrificans DSM 20603 cellulose-binding family II protein YP_003160698.1 792567 R 471856 CDS YP_003160699.1 256831972 8379917 complement(795605..797116) 1 NC_013174.1 PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; glycoside hydrolase family protein 797116 8379917 Jden_0732 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160699.1 795605 R 471856 CDS YP_003160700.1 256831973 8379918 complement(797269..798735) 1 NC_013174.1 PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; glycoside hydrolase family protein 798735 8379918 Jden_0733 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160700.1 797269 R 471856 CDS YP_003160701.1 256831974 8379919 complement(798744..800486) 1 NC_013174.1 PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: azc:AZC_1301 endoglucanase; glycoside hydrolase family protein 800486 8379919 Jden_0734 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160701.1 798744 R 471856 CDS YP_003160702.1 256831975 8379920 complement(800547..802418) 1 NC_013174.1 PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: rso:RS03897 exoglucanase A; glycoside hydrolase family protein 802418 8379920 Jden_0735 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003160702.1 800547 R 471856 CDS YP_003160703.1 256831976 8379921 complement(802531..803595) 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce0662 LacI family transcription regulator; transcriptional regulator, LacI family 803595 8379921 Jden_0736 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003160703.1 802531 R 471856 CDS YP_003160704.1 256831977 8381751 complement(805789..806220) 1 NC_013174.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 hypothetical protein; UspA domain-containing protein 806220 8381751 Jden_0738 Jonesia denitrificans DSM 20603 UspA domain-containing protein YP_003160704.1 805789 R 471856 CDS YP_003160705.1 256831978 8379923 complement(806239..807987) 1 NC_013174.1 KEGG: hha:Hhal_0084 hypothetical protein; hypothetical protein 807987 8379923 Jden_0739 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160705.1 806239 R 471856 CDS YP_003160706.1 256831979 8379924 808163..809506 1 NC_013174.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dal:Dalk_3397 PhoH family protein; PhoH family protein 809506 8379924 Jden_0740 Jonesia denitrificans DSM 20603 PhoH family protein YP_003160706.1 808163 D 471856 CDS YP_003160707.1 256831980 8379925 809538..810026 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mlo:mlr3448 MarR family regulatory protein; transcriptional regulator, MarR family 810026 8379925 Jden_0741 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003160707.1 809538 D 471856 CDS YP_003160708.1 256831981 8379926 complement(810153..811568) 1 NC_013174.1 PFAM: fumarate lyase; KEGG: hha:Hhal_0025 fumarate lyase; fumarate lyase 811568 8379926 Jden_0742 Jonesia denitrificans DSM 20603 fumarate lyase YP_003160708.1 810153 R 471856 CDS YP_003160709.1 256831982 8379927 complement(811666..812298) 1 NC_013174.1 PFAM: carbonic anhydrase; KEGG: mch:Mchl_4468 carbonic anhydrase; carbonic anhydrase 812298 8379927 Jden_0743 Jonesia denitrificans DSM 20603 carbonic anhydrase YP_003160709.1 811666 R 471856 CDS YP_003160710.1 256831983 8379928 complement(812453..813388) 1 NC_013174.1 PFAM: PfkB domain protein; KEGG: sit:TM1040_3042 PfkB; PfkB domain-containing protein 813388 8379928 Jden_0744 Jonesia denitrificans DSM 20603 PfkB domain-containing protein YP_003160710.1 812453 R 471856 CDS YP_003160711.1 256831984 8379929 complement(813394..813630) 1 NC_013174.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: AGAP012846-PA; exodeoxyribonuclease VII small subunit 813630 8379929 Jden_0745 Jonesia denitrificans DSM 20603 exodeoxyribonuclease VII small subunit YP_003160711.1 813394 R 471856 CDS YP_003160712.1 256831985 8379930 complement(813627..815030) 1 NC_013174.1 KEGG: sat:SYN_02459 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 815030 8379930 Jden_0746 Jonesia denitrificans DSM 20603 exodeoxyribonuclease VII large subunit YP_003160712.1 813627 R 471856 CDS YP_003160713.1 256831986 8379931 815155..816261 1 NC_013174.1 KEGG: sus:Acid_1259 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 816261 8379931 Jden_0747 Jonesia denitrificans DSM 20603 hydroxymethylbutenyl pyrophosphate reductase YP_003160713.1 815155 D 471856 CDS YP_003160714.1 256831987 8379932 816354..817463 1 NC_013174.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: nmn:NMCC_0384 translation-associated GTPase; GTP-binding protein YchF 817463 8379932 Jden_0748 Jonesia denitrificans DSM 20603 GTP-binding protein YchF YP_003160714.1 816354 D 471856 CDS YP_003160715.1 256831988 8379933 817542..818264 1 NC_013174.1 PFAM: Methyltransferase type 11; KEGG: pau:PA14_11170 hypothetical protein; type 11 methyltransferase 818264 8379933 Jden_0749 Jonesia denitrificans DSM 20603 type 11 methyltransferase YP_003160715.1 817542 D 471856 CDS YP_003160716.1 256831989 8379934 818269..818622 1 NC_013174.1 KEGG: hha:Hhal_1672 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 818622 8379934 Jden_0750 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003160716.1 818269 D 471856 CDS YP_003160717.1 256831990 8379935 818622..818963 1 NC_013174.1 KEGG: scl:sce7493 putative hydrolase; putative hydrolase 818963 8379935 Jden_0751 Jonesia denitrificans DSM 20603 putative hydrolase YP_003160717.1 818622 D 471856 CDS YP_003160718.1 256831991 8379936 complement(819235..819543) 1 NC_013174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_2159 hypothetical protein; XRE family transcriptional regulator 819543 8379936 Jden_0752 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003160718.1 819235 R 471856 CDS YP_003160719.1 256831992 8379937 819974..820300 1 NC_013174.1 hypothetical protein 820300 8379937 Jden_0753 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160719.1 819974 D 471856 CDS YP_003160720.1 256831993 8379938 820326..822389 1 NC_013174.1 hypothetical protein 822389 8379938 Jden_0754 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160720.1 820326 D 471856 CDS YP_003160721.1 256831994 8379939 822389..823087 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1534 ABC transporter related; ABC transporter 823087 8379939 Jden_0755 Jonesia denitrificans DSM 20603 ABC transporter YP_003160721.1 822389 D 471856 CDS YP_003160722.1 256831995 8379940 complement(823185..823604) 1 NC_013174.1 hypothetical protein 823604 8379940 Jden_0756 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160722.1 823185 R 471856 CDS YP_003160723.1 256831996 8379941 complement(823601..824041) 1 NC_013174.1 hypothetical protein 824041 8379941 Jden_0757 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160723.1 823601 R 471856 CDS YP_003160724.1 256831997 8379942 complement(824051..824395) 1 NC_013174.1 hypothetical protein 824395 8379942 Jden_0758 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160724.1 824051 R 471856 CDS YP_003160725.1 256831998 8379943 complement(824388..824585) 1 NC_013174.1 hypothetical protein 824585 8379943 Jden_0759 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160725.1 824388 R 471856 CDS YP_003160726.1 256831999 8379944 complement(824668..825009) 1 NC_013174.1 hypothetical protein 825009 8379944 Jden_0760 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160726.1 824668 R 471856 CDS YP_003160727.1 256832000 8379945 complement(825013..825465) 1 NC_013174.1 TIGRFAM: prevent-host-death family protein; prevent-host-death family protein 825465 8379945 Jden_0761 Jonesia denitrificans DSM 20603 prevent-host-death family protein YP_003160727.1 825013 R 471856 CDS YP_003160728.1 256832001 8379946 complement(825606..825968) 1 NC_013174.1 hypothetical protein 825968 8379946 Jden_0762 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160728.1 825606 R 471856 CDS YP_003160729.1 256832002 8379947 complement(826004..826231) 1 NC_013174.1 hypothetical protein 826231 8379947 Jden_0763 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160729.1 826004 R 471856 CDS YP_003160730.1 256832003 8379948 complement(826322..826657) 1 NC_013174.1 hypothetical protein 826657 8379948 Jden_0764 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160730.1 826322 R 471856 CDS YP_003160731.1 256832004 8379949 complement(826762..827751) 1 NC_013174.1 PFAM: Clp domain protein; KEGG: oan:Oant_4466 ATPase AAA-2 domain protein; Clp domain-containing protein 827751 8379949 Jden_0765 Jonesia denitrificans DSM 20603 Clp domain-containing protein YP_003160731.1 826762 R 471856 CDS YP_003160732.1 256832005 8379950 complement(827748..827993) 1 NC_013174.1 hypothetical protein 827993 8379950 Jden_0766 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160732.1 827748 R 471856 CDS YP_003160733.1 256832006 8379951 828193..828474 1 NC_013174.1 PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer; plasmid maintenance system killer protein 828474 8379951 Jden_0767 Jonesia denitrificans DSM 20603 plasmid maintenance system killer protein YP_003160733.1 828193 D 471856 CDS YP_003160734.1 256832007 8379952 828461..828763 1 NC_013174.1 KEGG: hha:Hhal_1672 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 828763 8379952 Jden_0768 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003160734.1 828461 D 471856 CDS YP_003160735.1 256832008 8379953 828760..829275 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_3735 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 829275 8379953 Jden_0769 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160735.1 828760 D 471856 CDS YP_003160736.1 256832009 8379954 complement(829365..829751) 1 NC_013174.1 hypothetical protein 829751 8379954 Jden_0770 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160736.1 829365 R 471856 CDS YP_003160737.1 256832010 8379955 complement(829789..830076) 1 NC_013174.1 KEGG: smt:Smal_0710 transcriptional regulator, ArsR family; hypothetical protein 830076 8379955 Jden_0771 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160737.1 829789 R 471856 CDS YP_003160738.1 256832011 8379956 830174..830362 1 NC_013174.1 hypothetical protein 830362 8379956 Jden_0772 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160738.1 830174 D 471856 CDS YP_003160739.1 256832012 8379957 830505..830759 1 NC_013174.1 PFAM: plasmid stabilization system; KEGG: gur:Gura_2099 addiction module antitoxin; plasmid stabilization system 830759 8379957 Jden_0773 Jonesia denitrificans DSM 20603 plasmid stabilization system YP_003160739.1 830505 D 471856 CDS YP_003160740.1 256832013 8379958 830881..831534 1 NC_013174.1 KEGG: rpa:RPA1621 hypothetical protein; hypothetical protein 831534 8379958 Jden_0774 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160740.1 830881 D 471856 CDS YP_003160741.1 256832014 8381752 complement(832868..834760) 1 NC_013174.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afe:Lferr_0209 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 834760 8381752 Jden_0776 Jonesia denitrificans DSM 20603 heavy metal translocating P-type ATPase YP_003160741.1 832868 R 471856 CDS YP_003160742.1 256832015 8379960 complement(834757..835116) 1 NC_013174.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bmv:BMASAVP1_A2519 ArsR family transcriptional regulator; ArsR family transcriptional regulator 835116 8379960 Jden_0777 Jonesia denitrificans DSM 20603 ArsR family transcriptional regulator YP_003160742.1 834757 R 471856 CDS YP_003160743.1 256832016 8379961 complement(835199..836266) 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: rpa:RPA1957 alkanal monooxygenase (LuxA-like protein); luciferase-like monooxygenase 836266 8379961 Jden_0778 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003160743.1 835199 R 471856 CDS YP_003160744.1 256832017 8379962 836481..836693 1 NC_013174.1 KEGG: tgr:Tgr7_3300 addiction module antitoxin; addiction module antitoxin 836693 8379962 Jden_0779 Jonesia denitrificans DSM 20603 addiction module antitoxin YP_003160744.1 836481 D 471856 CDS YP_003160745.1 256832018 8379963 836785..837402 1 NC_013174.1 PFAM: protein of unknown function DUF1648; hypothetical protein 837402 8379963 Jden_0780 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160745.1 836785 D 471856 CDS YP_003160746.1 256832019 8379964 837593..838216 1 NC_013174.1 KEGG: cvi:CV_0278 hypothetical protein; hypothetical protein 838216 8379964 Jden_0781 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160746.1 837593 D 471856 CDS YP_003160747.1 256832020 8379965 838213..838686 1 NC_013174.1 KEGG: ajs:Ajs_3140 putative protein-S- isoprenylcysteine methyltransferase-like protein; putative protein-S-isoprenylcysteine methyltransferase-like protein 838686 8379965 Jden_0782 Jonesia denitrificans DSM 20603 putative protein-S-isoprenylcysteine methyltransferase-like protein YP_003160747.1 838213 D 471856 CDS YP_003160748.1 256832021 8379966 838859..839392 1 NC_013174.1 hypothetical protein 839392 8379966 Jden_0783 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160748.1 838859 D 471856 CDS YP_003160749.1 256832022 8379967 839530..840591 1 NC_013174.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: abb:ABBFA_001791 sorbitol dehydrogenase; Alcohol dehydrogenase zinc-binding domain-containing protein 840591 8379967 Jden_0784 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase zinc-binding domain-containing protein YP_003160749.1 839530 D 471856 CDS YP_003160750.1 256832023 8379968 840976..842778 1 NC_013174.1 PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 842778 8379968 Jden_0785 Jonesia denitrificans DSM 20603 family 5 extracellular solute-binding protein YP_003160750.1 840976 D 471856 CDS YP_003160751.1 256832024 8379969 842975..844492 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_2317 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 844492 8379969 Jden_0786 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160751.1 842975 D 471856 CDS YP_003160752.1 256832025 8379970 844585..845544 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 845544 8379970 Jden_0787 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003160752.1 844585 D 471856 CDS YP_003160753.1 256832026 8379971 845544..847274 1 NC_013174.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; ABC transporter 847274 8379971 Jden_0788 Jonesia denitrificans DSM 20603 ABC transporter YP_003160753.1 845544 D 471856 CDS YP_003160754.1 256832027 8379972 847305..849695 1 NC_013174.1 KEGG: predicted protein; hypothetical protein 849695 8379972 Jden_0789 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160754.1 847305 D 471856 CDS YP_003160755.1 256832028 8379973 849703..852003 1 NC_013174.1 KEGG: bxe:Bxe_B0776 putative membrane glycoprotein; hypothetical protein 852003 8379973 Jden_0790 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160755.1 849703 D 471856 CDS YP_003160756.1 256832029 8379974 852021..852956 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_2609 ABC transporter related; ABC transporter 852956 8379974 Jden_0791 Jonesia denitrificans DSM 20603 ABC transporter YP_003160756.1 852021 D 471856 CDS YP_003160757.1 256832030 8379975 852953..853591 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein; ABC transporter 853591 8379975 Jden_0792 Jonesia denitrificans DSM 20603 ABC transporter YP_003160757.1 852953 D 471856 CDS YP_003160758.1 256832031 8379976 853726..855633 1 NC_013174.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: aba:Acid345_4404 GTP-binding protein TypA; GTP-binding protein TypA 855633 8379976 Jden_0793 Jonesia denitrificans DSM 20603 GTP-binding protein TypA YP_003160758.1 853726 D 471856 CDS YP_003160759.1 256832032 8379977 855650..856645 1 NC_013174.1 PFAM: LmbE family protein; KEGG: xcb:XC_2586 hypothetical protein; LmbE family protein 856645 8379977 Jden_0794 Jonesia denitrificans DSM 20603 LmbE family protein YP_003160759.1 855650 D 471856 CDS YP_003160760.1 256832033 8379978 856662..857054 1 NC_013174.1 hypothetical protein 857054 8379978 Jden_0795 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160760.1 856662 D 471856 CDS YP_003160761.1 256832034 8379979 857130..859673 1 NC_013174.1 PFAM: VanW family protein; KEGG: trans-sialidase; VanW family protein 859673 8379979 Jden_0796 Jonesia denitrificans DSM 20603 VanW family protein YP_003160761.1 857130 D 471856 CDS YP_003160762.1 256832035 8379980 859677..860543 1 NC_013174.1 hypothetical protein 860543 8379980 Jden_0797 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160762.1 859677 D 471856 CDS YP_003160763.1 256832036 8379981 860565..861479 1 NC_013174.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: azo:azo1068 chorismate mutase/prephenate dehydratase; Prephenate dehydratase 861479 8379981 Jden_0798 Jonesia denitrificans DSM 20603 Prephenate dehydratase YP_003160763.1 860565 D 471856 CDS YP_003160764.1 256832037 8379982 861476..862465 1 NC_013174.1 PFAM: Prephenate dehydrogenase; KEGG: pst:PSPTO_1748 prephenate dehydrogenase/3- phosphoshikimate 1-carboxyvinyltransferase family protein; prephenate dehydrogenase 862465 8379982 Jden_0799 Jonesia denitrificans DSM 20603 prephenate dehydrogenase YP_003160764.1 861476 D 471856 CDS YP_003160765.1 256832038 8379983 complement(862462..862770) 1 NC_013174.1 hypothetical protein 862770 8379983 Jden_0800 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160765.1 862462 R 471856 CDS YP_003160766.1 256832039 8379984 862909..863226 1 NC_013174.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vei:Veis_3502 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 863226 8379984 Jden_0801 Jonesia denitrificans DSM 20603 4Fe-4S ferredoxin YP_003160766.1 862909 D 471856 CDS YP_003160767.1 256832040 8379985 863233..864411 1 NC_013174.1 PFAM: aminotransferase class I and II; KEGG: reh:H16_A2065 aminotransferase, class I and II; class I and II aminotransferase 864411 8379985 Jden_0802 Jonesia denitrificans DSM 20603 class I and II aminotransferase YP_003160767.1 863233 D 471856 CDS YP_003160768.1 256832041 8379986 864652..865974 1 NC_013174.1 KEGG: scl:sce8281 hypothetical protein; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 865974 8379986 Jden_0803 Jonesia denitrificans DSM 20603 citrate synthase I YP_003160768.1 864652 D 471856 CDS YP_003160769.1 256832042 8379987 complement(866062..867018) 1 NC_013174.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pat:Patl_3394 putative 2,3,4, 5- tetrahydropyridine-2-carboxylate N-succinyltransferase; transferase hexapeptide repeat containing protein 867018 8379987 Jden_0804 Jonesia denitrificans DSM 20603 transferase hexapeptide repeat containing protein YP_003160769.1 866062 R 471856 CDS YP_003160770.1 256832043 8379988 867140..868255 1 NC_013174.1 TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ank:AnaeK_3891 peptidase M20; succinyl-diaminopimelate desuccinylase 868255 8379988 Jden_0805 Jonesia denitrificans DSM 20603 succinyl-diaminopimelate desuccinylase YP_003160770.1 867140 D 471856 CDS YP_003160771.1 256832044 8379989 868316..869119 1 NC_013174.1 PFAM: conserved hypothetical protein; KEGG: hypothetical protein; hypothetical protein 869119 8379989 Jden_0806 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160771.1 868316 D 471856 CDS YP_003160772.1 256832045 8379990 869205..870071 1 NC_013174.1 KEGG: bcy:Bcer98_0067 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 870071 8379990 Jden_0807 Jonesia denitrificans DSM 20603 dihydropteroate synthase YP_003160772.1 869205 D 471856 CDS YP_003160773.1 256832046 8379991 870201..870368 1 NC_013174.1 hypothetical protein 870368 8379991 Jden_0808 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160773.1 870201 D 471856 CDS YP_003160774.1 256832047 8379992 870372..871985 1 NC_013174.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: hne:HNE_2244 cytosol aminopeptidase; leucyl aminopeptidase 871985 8379992 Jden_0809 Jonesia denitrificans DSM 20603 leucyl aminopeptidase YP_003160774.1 870372 D 471856 CDS YP_003160775.1 256832048 8379993 complement(872031..872666) 1 NC_013174.1 PFAM: Methyltransferase type 11; O- methyltransferase family 3; KEGG: bur:Bcep18194_B2421 O-methyltransferase family protein; type 11 methyltransferase 872666 8379993 Jden_0810 Jonesia denitrificans DSM 20603 type 11 methyltransferase YP_003160775.1 872031 R 471856 CDS YP_003160776.1 256832049 8379994 872780..873313 1 NC_013174.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sus:Acid_0793 ECF subfamily RNA polymerase sigma-24 factor; ECF subfamily RNA polymerase sigma-24 subunit 873313 8379994 Jden_0811 Jonesia denitrificans DSM 20603 ECF subfamily RNA polymerase sigma-24 subunit YP_003160776.1 872780 D 471856 CDS YP_003160777.1 256832050 8379995 873310..874248 1 NC_013174.1 hypothetical protein 874248 8379995 Jden_0812 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160777.1 873310 D 471856 CDS YP_003160778.1 256832051 8379996 874245..875702 1 NC_013174.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: acr:Acry_1317 protease Do; peptidase S1 and S6 chymotrypsin/Hap 875702 8379996 Jden_0813 Jonesia denitrificans DSM 20603 peptidase S1 and S6 chymotrypsin/Hap YP_003160778.1 874245 D 471856 CDS YP_003160779.1 256832052 8379997 875748..876173 1 NC_013174.1 KEGG: pfl:PFL_0421 sec-independent translocase; sec-independent translocase 876173 8379997 Jden_0814 Jonesia denitrificans DSM 20603 sec-independent translocase YP_003160779.1 875748 D 471856 CDS YP_003160780.1 256832053 8379998 876262..877287 1 NC_013174.1 KEGG: eca:ECA4087 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 877287 8379998 Jden_0815 Jonesia denitrificans DSM 20603 tryptophanyl-tRNA synthetase YP_003160780.1 876262 D 471856 CDS YP_003160781.1 256832054 8379999 877290..877829 1 NC_013174.1 PFAM: Phosphoesterase HXTX; KEGG: bcy:Bcer98_0945 hypothetical protein; phosphoesterase HXTX 877829 8379999 Jden_0816 Jonesia denitrificans DSM 20603 phosphoesterase HXTX YP_003160781.1 877290 D 471856 CDS YP_003160782.1 256832055 8380000 877911..878858 1 NC_013174.1 PFAM: ribonuclease BN; KEGG: mpt:Mpe_A3481 ribonuclease BN family protein; ribonuclease BN 878858 8380000 Jden_0817 Jonesia denitrificans DSM 20603 ribonuclease BN YP_003160782.1 877911 D 471856 CDS YP_003160783.1 256832056 8380001 complement(878982..879740) 1 NC_013174.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bav:BAV1185 succinate dehydrogenase iron- sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 879740 8380001 Jden_0818 Jonesia denitrificans DSM 20603 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003160783.1 878982 R 471856 CDS YP_003160784.1 256832057 8380002 complement(879740..881569) 1 NC_013174.1 KEGG: sfu:Sfum_2104 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 881569 8380002 Jden_0819 Jonesia denitrificans DSM 20603 succinate dehydrogenase or fumarate reductase, flavoprotein subunit YP_003160784.1 879740 R 471856 CDS YP_003160785.1 256832058 8380003 complement(881617..882057) 1 NC_013174.1 KEGG: eta:ETA_23070 succinate dehydrogenase hydrophobic membrane anchor protein; Succinate dehydrogenase hydrophobic anchor subunit-like protein 882057 8380003 Jden_0820 Jonesia denitrificans DSM 20603 Succinate dehydrogenase hydrophobic anchor subunit-like protein YP_003160785.1 881617 R 471856 CDS YP_003160786.1 256832059 8380004 complement(882057..882437) 1 NC_013174.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: har:HEAR3329 putative succinate dehydrogenase/fumarate reductase cytochrome b-556 subunit; succinate dehydrogenase, cytochrome b556 subunit 882437 8380004 Jden_0821 Jonesia denitrificans DSM 20603 succinate dehydrogenase, cytochrome b556 subunit YP_003160786.1 882057 R 471856 CDS YP_003160787.1 256832060 8380005 882687..883844 1 NC_013174.1 PFAM: Nucleotidyl transferase; KEGG: hypothetical protein; mannose-1-phosphate guanylyltransferase 883844 8380005 Jden_0822 Jonesia denitrificans DSM 20603 mannose-1-phosphate guanylyltransferase YP_003160787.1 882687 D 471856 CDS YP_003160788.1 256832061 8380006 883909..885108 1 NC_013174.1 KEGG: nis:NIS_1768 N-acetyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 885108 8380006 Jden_0823 Jonesia denitrificans DSM 20603 amidohydrolase YP_003160788.1 883909 D 471856 CDS YP_003160789.1 256832062 8380007 885412..886488 1 NC_013174.1 PFAM: basic membrane lipoprotein; KEGG: scl:sce7758 Bmp family lipoprotein; basic membrane lipoprotein 886488 8380007 Jden_0824 Jonesia denitrificans DSM 20603 basic membrane lipoprotein YP_003160789.1 885412 D 471856 CDS YP_003160790.1 256832063 8380008 886630..888213 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7755 sugar ABC transporter, ATP- binding protein; ABC transporter 888213 8380008 Jden_0825 Jonesia denitrificans DSM 20603 ABC transporter YP_003160790.1 886630 D 471856 CDS YP_003160791.1 256832064 8380009 888210..889454 1 NC_013174.1 PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; inner-membrane translocator 889454 8380009 Jden_0826 Jonesia denitrificans DSM 20603 inner-membrane translocator YP_003160791.1 888210 D 471856 CDS YP_003160792.1 256832065 8380010 889451..890740 1 NC_013174.1 PFAM: inner-membrane translocator; KEGG: scl:sce7756 uncharacterized ABC-type transport system,permease component; inner-membrane translocator 890740 8380010 Jden_0827 Jonesia denitrificans DSM 20603 inner-membrane translocator YP_003160792.1 889451 D 471856 CDS YP_003160793.1 256832066 8380011 890863..891297 1 NC_013174.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cps:CPS_1969 cytidine deaminase; cytidine deaminase 891297 8380011 Jden_0828 Jonesia denitrificans DSM 20603 cytidine deaminase YP_003160793.1 890863 D 471856 CDS YP_003160794.1 256832067 8380012 891294..892589 1 NC_013174.1 KEGG: acp:A2cp1_0651 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like; pyrimidine-nucleoside phosphorylase 892589 8380012 Jden_0829 Jonesia denitrificans DSM 20603 pyrimidine-nucleoside phosphorylase YP_003160794.1 891294 D 471856 CDS YP_003160795.1 256832068 8380013 892660..893508 1 NC_013174.1 hypothetical protein 893508 8380013 Jden_0830 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160795.1 892660 D 471856 CDS YP_003160796.1 256832069 8380014 893505..894587 1 NC_013174.1 KEGG: acp:A2cp1_0116 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 894587 8380014 Jden_0831 Jonesia denitrificans DSM 20603 adenosine deaminase YP_003160796.1 893505 D 471856 CDS YP_003160797.1 256832070 8380015 894592..895302 1 NC_013174.1 KEGG: bha:BH1352 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 895302 8380015 Jden_0832 Jonesia denitrificans DSM 20603 deoxyribose-phosphate aldolase YP_003160797.1 894592 D 471856 CDS YP_003160798.1 256832071 8380016 895387..896190 1 NC_013174.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: rpi:Rpic_3953 FAD-binding 9 siderophore- interacting domain protein; FAD-binding 9 siderophore-interacting domain-containing protein 896190 8380016 Jden_0833 Jonesia denitrificans DSM 20603 FAD-binding 9 siderophore-interacting domain-containing protein YP_003160798.1 895387 D 471856 CDS YP_003160799.1 256832072 8380017 complement(896299..898101) 1 NC_013174.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: apj:APJL_0584 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 898101 8380017 Jden_0834 Jonesia denitrificans DSM 20603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003160799.1 896299 R 471856 CDS YP_003160800.1 256832073 8380018 complement(898113..898949) 1 NC_013174.1 TIGRFAM: purine nucleotide phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: scl:sce5862 hypothetical protein; purine nucleotide phosphorylase 898949 8380018 Jden_0835 Jonesia denitrificans DSM 20603 purine nucleotide phosphorylase YP_003160800.1 898113 R 471856 CDS YP_003160801.1 256832074 8380019 899165..900640 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: swi:Swit_5151 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 900640 8380019 Jden_0836 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003160801.1 899165 D 471856 CDS YP_003160802.1 256832075 8380020 complement(900644..901174) 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: bca:BCE_3110 MutT/NUDIX family protein; NUDIX hydrolase 901174 8380020 Jden_0837 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003160802.1 900644 R 471856 CDS YP_003160803.1 256832076 8380021 901369..902475 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase 902475 8380021 Jden_0838 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003160803.1 901369 D 471856 CDS YP_003160804.1 256832077 8380022 complement(902472..903686) 1 NC_013174.1 KEGG: nme:NMB0065 hypothetical protein; hypothetical protein 903686 8380022 Jden_0839 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160804.1 902472 R 471856 CDS YP_003160805.1 256832078 8380023 complement(903683..904681) 1 NC_013174.1 hypothetical protein 904681 8380023 Jden_0840 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160805.1 903683 R 471856 CDS YP_003160806.1 256832079 8380024 complement(904678..906045) 1 NC_013174.1 hypothetical protein 906045 8380024 Jden_0841 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160806.1 904678 R 471856 CDS YP_003160807.1 256832080 8380025 complement(906038..907081) 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: bcb:BCB4264_A5552 beta-1,3-N- acetylglucosaminyltransferase; family 2 glycosyl transferase 907081 8380025 Jden_0842 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003160807.1 906038 R 471856 CDS YP_003160808.1 256832081 8380026 complement(907084..907974) 1 NC_013174.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase; N-acetylneuraminate synthase 907974 8380026 Jden_0843 Jonesia denitrificans DSM 20603 N-acetylneuraminate synthase YP_003160808.1 907084 R 471856 CDS YP_003160809.1 256832082 8380027 complement(907976..909247) 1 NC_013174.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: pca:Pcar_1278 CMP-N-acetylneuraminic acid synthetase; acylneuraminate cytidylyltransferase 909247 8380027 Jden_0844 Jonesia denitrificans DSM 20603 acylneuraminate cytidylyltransferase YP_003160809.1 907976 R 471856 CDS YP_003160810.1 256832083 8380028 complement(909355..911142) 1 NC_013174.1 PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2; Carbamoyl-phosphate synthase L chain ATP- binding 911142 8380028 Jden_0845 Jonesia denitrificans DSM 20603 Carbamoyl-phosphate synthase L chain ATP- binding YP_003160810.1 909355 R 471856 CDS YP_003160811.1 256832084 8380029 complement(911298..911954) 1 NC_013174.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: similar to GI12342; maf protein 911954 8380029 Jden_0846 Jonesia denitrificans DSM 20603 maf protein YP_003160811.1 911298 R 471856 CDS YP_003160812.1 256832085 8380030 complement(911957..913660) 1 NC_013174.1 PFAM: protein of unknown function DUF885; KEGG: scl:sce1630 hypothetical protein; hypothetical protein 913660 8380030 Jden_0847 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160812.1 911957 R 471856 CDS YP_003160813.1 256832086 8380031 913826..914488 1 NC_013174.1 PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: GE11817 gene product from transcript GE11817- RA; vitamin K epoxide reductase 914488 8380031 Jden_0848 Jonesia denitrificans DSM 20603 vitamin K epoxide reductase YP_003160813.1 913826 D 471856 CDS YP_003160814.1 256832087 8380032 914559..915671 1 NC_013174.1 PFAM: acyltransferase 3; KEGG: mxa:MXAN_6814 acyltransferase family protein; acyltransferase 3 915671 8380032 Jden_0849 Jonesia denitrificans DSM 20603 acyltransferase 3 YP_003160814.1 914559 D 471856 CDS YP_003160815.1 256832088 8380033 complement(915807..917387) 1 NC_013174.1 PFAM: carboxyl transferase; KEGG: dol:Dole_0077 carboxyl transferase; carboxyl transferase 917387 8380033 Jden_0850 Jonesia denitrificans DSM 20603 carboxyl transferase YP_003160815.1 915807 R 471856 CDS YP_003160816.1 256832089 8380034 917522..918358 1 NC_013174.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: afw:Anae109_1479 biotin--acetyl-CoA- carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 918358 8380034 Jden_0851 Jonesia denitrificans DSM 20603 biotin--acetyl-CoA-carboxylase ligase YP_003160816.1 917522 D 471856 CDS YP_003160817.1 256832090 8380035 918446..919498 1 NC_013174.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_0533 adenylate/guanylate cyclase; adenylate/guanylate cyclase 919498 8380035 Jden_0852 Jonesia denitrificans DSM 20603 adenylate/guanylate cyclase YP_003160817.1 918446 D 471856 CDS YP_003160818.1 256832091 8380036 complement(919461..920273) 1 NC_013174.1 PFAM: protein of unknown function DUF159; KEGG: tmz:Tmz1t_2360 protein of unknown function DUF159; hypothetical protein 920273 8380036 Jden_0853 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160818.1 919461 R 471856 CDS YP_003160819.1 256832092 8380037 complement(920288..920935) 1 NC_013174.1 KEGG: mxa:MXAN_3395 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 920935 8380037 Jden_0854 Jonesia denitrificans DSM 20603 peptide deformylase YP_003160819.1 920288 R 471856 CDS YP_003160820.1 256832093 8380038 921027..922334 1 NC_013174.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_7495 drug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 922334 8380038 Jden_0855 Jonesia denitrificans DSM 20603 Bcr/CflA subfamily drug resistance transporter YP_003160820.1 921027 D 471856 CDS YP_003160821.1 256832094 8380039 922511..923746 1 NC_013174.1 PFAM: type II secretion system protein E; KEGG: tcx:Tcr_1725 type II secretion system protein E; type II secretion system protein E 923746 8380039 Jden_0856 Jonesia denitrificans DSM 20603 type II secretion system protein E YP_003160821.1 922511 D 471856 CDS YP_003160822.1 256832095 8380040 923737..924591 1 NC_013174.1 PFAM: type II secretion system protein; KEGG: bpt:Bpet2079 hypothetical protein; type II secretion system protein 924591 8380040 Jden_0857 Jonesia denitrificans DSM 20603 type II secretion system protein YP_003160822.1 923737 D 471856 CDS YP_003160823.1 256832096 8380041 924588..925523 1 NC_013174.1 PFAM: type II secretion system protein; KEGG: type II secretion system protein; type II secretion system protein 925523 8380041 Jden_0858 Jonesia denitrificans DSM 20603 type II secretion system protein YP_003160823.1 924588 D 471856 CDS YP_003160824.1 256832097 8380042 925573..925851 1 NC_013174.1 hypothetical protein 925851 8380042 Jden_0859 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160824.1 925573 D 471856 CDS YP_003160825.1 256832098 8380043 925868..926260 1 NC_013174.1 PFAM: TadE family protein; TadE family protein 926260 8380043 Jden_0860 Jonesia denitrificans DSM 20603 TadE family protein YP_003160825.1 925868 D 471856 CDS YP_003160826.1 256832099 8380044 926266..926703 1 NC_013174.1 PFAM: TadE family protein; TadE family protein 926703 8380044 Jden_0861 Jonesia denitrificans DSM 20603 TadE family protein YP_003160826.1 926266 D 471856 CDS YP_003160827.1 256832100 8380045 926703..927182 1 NC_013174.1 hypothetical protein 927182 8380045 Jden_0862 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160827.1 926703 D 471856 CDS YP_003160828.1 256832101 8380046 927256..928365 1 NC_013174.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: glo:Glov_2735 hypothetical protein; peptide chain release factor 2 928365 8380046 Jden_0863 Jonesia denitrificans DSM 20603 peptide chain release factor 2 YP_003160828.1 927256 D 471856 CDS YP_003160829.1 256832102 8380047 928447..929202 1 NC_013174.1 KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 929202 8380047 Jden_0864 Jonesia denitrificans DSM 20603 cell division ATP-binding protein FtsE YP_003160829.1 928447 D 471856 CDS YP_003160830.1 256832103 8380048 929214..930128 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein; cell division protein FtsX 930128 8380048 Jden_0865 Jonesia denitrificans DSM 20603 cell division protein FtsX YP_003160830.1 929214 D 471856 CDS YP_003160831.1 256832104 8380049 930131..931600 1 NC_013174.1 PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein; peptidase M23 931600 8380049 Jden_0866 Jonesia denitrificans DSM 20603 peptidase M23 YP_003160831.1 930131 D 471856 CDS YP_003160832.1 256832105 8380050 931738..932268 1 NC_013174.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: bcy:Bcer98_3672 SsrA-binding protein; SsrA-binding protein 932268 8380050 Jden_0867 Jonesia denitrificans DSM 20603 SsrA-binding protein YP_003160832.1 931738 D 471856 CDS YP_003160833.1 256832106 8381753 complement(932904..933329) 1 NC_013174.1 KEGG: hha:Hhal_1936 molybdopterin oxidoreductase Fe4s4 region; hypothetical protein 933329 8381753 Jden_0868 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160833.1 932904 R 471856 CDS YP_003160834.1 256832107 8380052 complement(933378..933659) 1 NC_013174.1 hypothetical protein 933659 8380052 Jden_0869 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160834.1 933378 R 471856 CDS YP_003160835.1 256832108 8380053 complement(933656..934420) 1 NC_013174.1 hypothetical protein 934420 8380053 Jden_0870 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160835.1 933656 R 471856 CDS YP_003160836.1 256832109 8380054 complement(934536..935171) 1 NC_013174.1 hypothetical protein 935171 8380054 Jden_0871 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160836.1 934536 R 471856 CDS YP_003160837.1 256832110 8380055 complement(935335..935706) 1 NC_013174.1 hypothetical protein 935706 8380055 Jden_0872 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160837.1 935335 R 471856 CDS YP_003160838.1 256832111 8380056 complement(935897..936538) 1 NC_013174.1 KEGG: Tash(AT)-like protein; hypothetical protein 936538 8380056 Jden_0873 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160838.1 935897 R 471856 CDS YP_003160839.1 256832112 8380057 complement(936682..937506) 1 NC_013174.1 hypothetical protein 937506 8380057 Jden_0874 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160839.1 936682 R 471856 CDS YP_003160840.1 256832113 8380058 complement(937503..938153) 1 NC_013174.1 KEGG: oan:Oant_2246 hypothetical protein; hypothetical protein 938153 8380058 Jden_0875 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160840.1 937503 R 471856 CDS YP_003160841.1 256832114 8380059 complement(938397..939209) 1 NC_013174.1 KEGG: bcz:BCZK3778 hypothetical protein; hypothetical protein 939209 8380059 Jden_0876 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160841.1 938397 R 471856 CDS YP_003160842.1 256832115 8380060 939382..939864 1 NC_013174.1 hypothetical protein 939864 8380060 Jden_0877 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160842.1 939382 D 471856 CDS YP_003160843.1 256832116 8380061 complement(939881..941476) 1 NC_013174.1 KEGG: mxa:MXAN_1583 hypothetical protein; hypothetical protein 941476 8380061 Jden_0878 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160843.1 939881 R 471856 CDS YP_003160844.1 256832117 8380062 complement(941522..941908) 1 NC_013174.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: mfa:Mfla_1265 RNA-binding S4; RNA-binding S4 domain-containing protein 941908 8380062 Jden_0879 Jonesia denitrificans DSM 20603 RNA-binding S4 domain-containing protein YP_003160844.1 941522 R 471856 CDS YP_003160845.1 256832118 8380063 942018..942365 1 NC_013174.1 hypothetical protein 942365 8380063 Jden_0880 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160845.1 942018 D 471856 CDS YP_003160846.1 256832119 8380064 942362..944227 1 NC_013174.1 PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: sde:Sde_1925 GGDEF family protein; type III restriction protein res subunit 944227 8380064 Jden_0881 Jonesia denitrificans DSM 20603 type III restriction protein res subunit YP_003160846.1 942362 D 471856 CDS YP_003160847.1 256832120 8380065 complement(944304..945635) 1 NC_013174.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: scl:sce3712 putative nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 945635 8380065 Jden_0882 Jonesia denitrificans DSM 20603 nicotinate phosphoribosyltransferase YP_003160847.1 944304 R 471856 CDS YP_003160848.1 256832121 8380066 945679..945978 1 NC_013174.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pen:PSEEN2206 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 945978 8380066 Jden_0883 Jonesia denitrificans DSM 20603 ATP-dependent Clp protease adaptor protein ClpS YP_003160848.1 945679 D 471856 CDS YP_003160849.1 256832122 8380067 945981..946676 1 NC_013174.1 hypothetical protein 946676 8380067 Jden_0884 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160849.1 945981 D 471856 CDS YP_003160850.1 256832123 8380068 946812..947618 1 NC_013174.1 KEGG: pca:Pcar_2724 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 947618 8380068 Jden_0885 Jonesia denitrificans DSM 20603 glutamate racemase YP_003160850.1 946812 D 471856 CDS YP_003160851.1 256832124 8380069 947615..948418 1 NC_013174.1 KEGG: bha:BH3002 hypothetical protein; hypothetical protein 948418 8380069 Jden_0886 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160851.1 947615 D 471856 CDS YP_003160852.1 256832125 8380070 948450..949082 1 NC_013174.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dds:Ddes_1892 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 949082 8380070 Jden_0887 Jonesia denitrificans DSM 20603 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_003160852.1 948450 D 471856 CDS YP_003160853.1 256832126 8380071 complement(949035..949424) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 949424 8380071 Jden_0888 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160853.1 949035 R 471856 CDS YP_003160854.1 256832127 8380072 949463..951127 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_00281 ABC transporter ATPase; ABC transporter 951127 8380072 Jden_0889 Jonesia denitrificans DSM 20603 ABC transporter YP_003160854.1 949463 D 471856 CDS YP_003160855.1 256832128 8380073 complement(951129..951704) 1 NC_013174.1 hypothetical protein 951704 8380073 Jden_0890 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160855.1 951129 R 471856 CDS YP_003160856.1 256832129 8380074 951916..952296 1 NC_013174.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tmz:Tmz1t_0609 thioredoxin; thioredoxin 952296 8380074 Jden_0891 Jonesia denitrificans DSM 20603 thioredoxin YP_003160856.1 951916 D 471856 CDS YP_003160857.1 256832130 8380075 952559..953155 1 NC_013174.1 hypothetical protein 953155 8380075 Jden_0892 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160857.1 952559 D 471856 CDS YP_003160858.1 256832131 8380076 complement(953191..953985) 1 NC_013174.1 KEGG: tgr:Tgr7_3237 tRNA (guanine-N(7)-)- methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 953985 8380076 Jden_0893 Jonesia denitrificans DSM 20603 tRNA (guanine-N(7)-)-methyltransferase YP_003160858.1 953191 R 471856 CDS YP_003160859.1 256832132 8380077 954098..954712 1 NC_013174.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: msl:Msil_0146 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 954712 8380077 Jden_0894 Jonesia denitrificans DSM 20603 Phosphoribosylanthranilate isomerase YP_003160859.1 954098 D 471856 CDS YP_003160860.1 256832133 8381754 complement(954844..955140) 1 NC_013174.1 hypothetical protein 955140 8381754 Jden_0896 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160860.1 954844 R 471856 CDS YP_003160861.1 256832134 8381755 complement(955464..955937) 1 NC_013174.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sus:Acid_7719 redoxin domain-containing protein; alkyl hydroperoxide reductase 955937 8381755 Jden_0897 Jonesia denitrificans DSM 20603 alkyl hydroperoxide reductase YP_003160861.1 955464 R 471856 CDS YP_003160862.1 256832135 8380080 955956..956363 1 NC_013174.1 PFAM: chaperonin Cpn10; KEGG: rce:RC1_2594 chaperonin GroS, putative; chaperonin Cpn10 956363 8380080 Jden_0898 Jonesia denitrificans DSM 20603 chaperonin Cpn10 YP_003160862.1 955956 D 471856 CDS YP_003160863.1 256832136 8380081 956656..956886 1 NC_013174.1 hypothetical protein 956886 8380081 Jden_0899 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160863.1 956656 D 471856 CDS YP_003160864.1 256832137 8381757 957452..957631 1 NC_013174.1 hypothetical protein 957631 8381757 Jden_0900 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160864.1 957452 D 471856 CDS YP_003160865.1 256832138 8380083 complement(957655..957792) 1 NC_013174.1 hypothetical protein 957792 8380083 Jden_0901 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160865.1 957655 R 471856 CDS YP_003160866.1 256832139 8380084 complement(957807..958370) 1 NC_013174.1 PFAM: Ferritin Dps family protein; KEGG: hdu:HD0068 fine tangled pili major subunit; ferritin Dps family protein 958370 8380084 Jden_0902 Jonesia denitrificans DSM 20603 ferritin Dps family protein YP_003160866.1 957807 R 471856 CDS YP_003160867.1 256832140 8380085 complement(958500..959120) 1 NC_013174.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: mmw:Mmwyl1_3395 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 959120 8380085 Jden_0903 Jonesia denitrificans DSM 20603 Sua5/YciO/YrdC/YwlC family protein YP_003160867.1 958500 R 471856 CDS YP_003160868.1 256832141 8380086 959194..960096 1 NC_013174.1 KEGG: mxa:MXAN_0885 hypothetical protein; hypothetical protein 960096 8380086 Jden_0904 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160868.1 959194 D 471856 CDS YP_003160869.1 256832142 8381758 960275..960802 1 NC_013174.1 PFAM: ribonuclease H; KEGG: bbr:BB4278 ribonuclease H; ribonuclease H 960802 8381758 Jden_0905 Jonesia denitrificans DSM 20603 ribonuclease H YP_003160869.1 960275 D 471856 CDS YP_003160870.1 256832143 8380088 960812..961579 1 NC_013174.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: ank:AnaeK_1955 methionine aminopeptidase, type I; methionine aminopeptidase 961579 8380088 Jden_0906 Jonesia denitrificans DSM 20603 methionine aminopeptidase YP_003160870.1 960812 D 471856 CDS YP_003160871.1 256832144 8380089 961576..962244 1 NC_013174.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: probable oligoribonuclease, mitochondrial precursor; K01175; Exonuclease RNase T and DNA polymerase III 962244 8380089 Jden_0907 Jonesia denitrificans DSM 20603 Exonuclease RNase T and DNA polymerase III YP_003160871.1 961576 D 471856 CDS YP_003160872.1 256832145 8381762 963645..963881 1 NC_013174.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pde:Pden_3294 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 963881 8381762 Jden_0911 Jonesia denitrificans DSM 20603 heavy metal transport/detoxification protein YP_003160872.1 963645 D 471856 CDS YP_003160873.1 256832146 8380091 963933..965972 1 NC_013174.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: oca:OCAR_4884 cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase 965972 8380091 Jden_0912 Jonesia denitrificans DSM 20603 heavy metal translocating P-type ATPase YP_003160873.1 963933 D 471856 CDS YP_003160874.1 256832147 8380092 965988..966113 1 NC_013174.1 hypothetical protein 966113 8380092 Jden_0913 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160874.1 965988 D 471856 CDS YP_003160875.1 256832148 8380093 966455..967360 1 NC_013174.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain-containing protein 967360 8380093 Jden_0914 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase GroES domain-containing protein YP_003160875.1 966455 D 471856 CDS YP_003160876.1 256832149 8380094 967357..968025 1 NC_013174.1 PFAM: Methyltransferase type 12; KEGG: cak:Caul_0872 methyltransferase type 12; type 12 methyltransferase 968025 8380094 Jden_0915 Jonesia denitrificans DSM 20603 type 12 methyltransferase YP_003160876.1 967357 D 471856 CDS YP_003160877.1 256832150 8380095 968089..968817 1 NC_013174.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: sat:SYN_00248 cyclic nucleotide-binding domain-containing protein; CarD family transcriptional regulator 968817 8380095 Jden_0916 Jonesia denitrificans DSM 20603 CarD family transcriptional regulator YP_003160877.1 968089 D 471856 CDS YP_003160878.1 256832151 8380096 968828..970753 1 NC_013174.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMa1163 cation transport P-type ATPase; heavy metal translocating P-type ATPase 970753 8380096 Jden_0917 Jonesia denitrificans DSM 20603 heavy metal translocating P-type ATPase YP_003160878.1 968828 D 471856 CDS YP_003160879.1 256832152 8380097 complement(970776..971087) 1 NC_013174.1 PFAM: protein of unknown function DUF156; KEGG: bsu:BSU33520 hypothetical protein; hypothetical protein 971087 8380097 Jden_0918 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160879.1 970776 R 471856 CDS YP_003160880.1 256832153 8380098 complement(971112..973205) 1 NC_013174.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr_0943 copper-translocating P-type ATPase; copper-translocating P-type ATPase 973205 8380098 Jden_0919 Jonesia denitrificans DSM 20603 copper-translocating P-type ATPase YP_003160880.1 971112 R 471856 CDS YP_003160881.1 256832154 8381764 complement(973983..974519) 1 NC_013174.1 hypothetical protein 974519 8381764 Jden_0922 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160881.1 973983 R 471856 CDS YP_003160882.1 256832155 8380100 complement(974745..975398) 1 NC_013174.1 hypothetical protein 975398 8380100 Jden_0923 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160882.1 974745 R 471856 CDS YP_003160883.1 256832156 8380101 975455..976195 1 NC_013174.1 PFAM: helix-turn-helix HxlR type; KEGG: bpa:BPP3401 putative transcriptional regulator; HxlR family transcriptional regulator 976195 8380101 Jden_0924 Jonesia denitrificans DSM 20603 HxlR family transcriptional regulator YP_003160883.1 975455 D 471856 CDS YP_003160884.1 256832157 8380102 976192..976683 1 NC_013174.1 PFAM: Camphor resistance CrcB protein; KEGG: nar:Saro_2836 camphor resistance protein CrcB; camphor resistance protein CrcB 976683 8380102 Jden_0925 Jonesia denitrificans DSM 20603 camphor resistance protein CrcB YP_003160884.1 976192 D 471856 CDS YP_003160885.1 256832158 8380103 976680..977069 1 NC_013174.1 PFAM: Camphor resistance CrcB protein; KEGG: rsh:Rsph17029_0390 CrcB protein; camphor resistance protein CrcB 977069 8380103 Jden_0926 Jonesia denitrificans DSM 20603 camphor resistance protein CrcB YP_003160885.1 976680 D 471856 CDS YP_003160886.1 256832159 8380104 977124..977315 1 NC_013174.1 hypothetical protein 977315 8380104 Jden_0927 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160886.1 977124 D 471856 CDS YP_003160887.1 256832160 8380105 977452..979074 1 NC_013174.1 KEGG: hha:Hhal_1736 putative ABC transporter; hypothetical protein 979074 8380105 Jden_0928 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160887.1 977452 D 471856 CDS YP_003160888.1 256832161 8380106 979157..980713 1 NC_013174.1 KEGG: hha:Hhal_1735 putative ABC transporter; hypothetical protein 980713 8380106 Jden_0929 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160888.1 979157 D 471856 CDS YP_003160889.1 256832162 8380107 980776..981309 1 NC_013174.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: azo:azo3385 single-strand DNA-binding protein; single-strand binding protein 981309 8380107 Jden_0930 Jonesia denitrificans DSM 20603 single-strand binding protein YP_003160889.1 980776 D 471856 CDS YP_003160890.1 256832163 8380108 981436..983118 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2098 putative ABC transporter ATP- binding protein; ABC transporter 983118 8380108 Jden_0931 Jonesia denitrificans DSM 20603 ABC transporter YP_003160890.1 981436 D 471856 CDS YP_003160891.1 256832164 8380109 983283..985235 1 NC_013174.1 KEGG: hha:Hhal_1736 putative ABC transporter; hypothetical protein 985235 8380109 Jden_0932 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160891.1 983283 D 471856 CDS YP_003160892.1 256832165 8380110 985232..986968 1 NC_013174.1 KEGG: hha:Hhal_1735 putative ABC transporter; hypothetical protein 986968 8380110 Jden_0933 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160892.1 985232 D 471856 CDS YP_003160893.1 256832166 8380111 986928..987473 1 NC_013174.1 PFAM: thioesterase superfamily protein; KEGG: xca:xccb100_3191 putative thioesterase; thioesterase superfamily protein 987473 8380111 Jden_0934 Jonesia denitrificans DSM 20603 thioesterase superfamily protein YP_003160893.1 986928 D 471856 CDS YP_003160894.1 256832167 8380112 complement(987479..988450) 1 NC_013174.1 PFAM: acyl-CoA thioesterase; KEGG: atc:AGR_C_4997 acyl-CoA thioesterase II; acyl-CoA thioesterase 988450 8380112 Jden_0935 Jonesia denitrificans DSM 20603 acyl-CoA thioesterase YP_003160894.1 987479 R 471856 CDS YP_003160895.1 256832168 8380113 complement(988507..988914) 1 NC_013174.1 PFAM: globin; KEGG: bha:BH2854 hypothetical protein; globin 988914 8380113 Jden_0936 Jonesia denitrificans DSM 20603 globin YP_003160895.1 988507 R 471856 CDS YP_003160896.1 256832169 8380114 complement(988940..990634) 1 NC_013174.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pag:PLES_14711 putative phosphotransferase system enzyme I; phosphoenolpyruvate-protein phosphotransferase 990634 8380114 Jden_0937 Jonesia denitrificans DSM 20603 phosphoenolpyruvate-protein phosphotransferase YP_003160896.1 988940 R 471856 CDS YP_003160897.1 256832170 8380115 990801..991046 1 NC_013174.1 PFAM: phosphotransferase system PTS EIIB protein; KEGG: bcy:Bcer98_2749 PTS system, glucose-specific IIABC component; PTS system transporter subunit IIB 991046 8380115 Jden_0938 Jonesia denitrificans DSM 20603 PTS system transporter subunit IIB YP_003160897.1 990801 D 471856 CDS YP_003160898.1 256832171 8380116 991055..991543 1 NC_013174.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: kpe:KPK_1590 PTS system, beta-glucoside- specific EIIBCA component; PTS system glucose subfamily transporter subunit IIA 991543 8380116 Jden_0939 Jonesia denitrificans DSM 20603 PTS system glucose subfamily transporter subunit IIA YP_003160898.1 991055 D 471856 CDS YP_003160899.1 256832172 8380117 complement(991530..992411) 1 NC_013174.1 PFAM: MscS Mechanosensitive ion channel; KEGG: aba:Acid345_1916 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 992411 8380117 Jden_0940 Jonesia denitrificans DSM 20603 mechanosensitive ion channel MscS YP_003160899.1 991530 R 471856 CDS YP_003160900.1 256832173 8380118 992522..994672 1 NC_013174.1 KEGG: rce:RC1_2119 probable maltokinase; 4-alpha-glucanotransferase 994672 8380118 Jden_0941 Jonesia denitrificans DSM 20603 4-alpha-glucanotransferase YP_003160900.1 992522 D 471856 CDS YP_003160901.1 256832174 8380119 complement(994661..995716) 1 NC_013174.1 KEGG: ypm:YP_1836 hypothetical protein; hypothetical protein 995716 8380119 Jden_0942 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160901.1 994661 R 471856 CDS YP_003160902.1 256832175 8380120 complement(995788..998337) 1 NC_013174.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: scl:sce2331 membrane alanyl aminopeptidase; aminopeptidase N 998337 8380120 Jden_0943 Jonesia denitrificans DSM 20603 aminopeptidase N YP_003160902.1 995788 R 471856 CDS YP_003160903.1 256832176 8380121 998491..999102 1 NC_013174.1 hypothetical protein 999102 8380121 Jden_0944 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160903.1 998491 D 471856 CDS YP_003160904.1 256832177 8380122 999197..999811 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 999811 8380122 Jden_0945 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160904.1 999197 D 471856 CDS YP_003160905.1 256832178 8380123 complement(999887..1001884) 1 NC_013174.1 PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: cps:CPS_1170 metalloendopeptidase PepO; Endothelin-converting enzyme 1 1001884 8380123 Jden_0946 Jonesia denitrificans DSM 20603 Endothelin-converting enzyme 1 YP_003160905.1 999887 R 471856 CDS YP_003160906.1 256832179 8380124 1001958..1002410 1 NC_013174.1 TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sfu:Sfum_1376 sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase 1002410 8380124 Jden_0947 Jonesia denitrificans DSM 20603 ribose 5-phosphate isomerase YP_003160906.1 1001958 D 471856 CDS YP_003160907.1 256832180 8380125 1002411..1003442 1 NC_013174.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: hypothetical protein; DNA glycosylase/AP lyase 1003442 8380125 Jden_0948 Jonesia denitrificans DSM 20603 DNA glycosylase/AP lyase YP_003160907.1 1002411 D 471856 CDS YP_003160908.1 256832181 8380126 complement(1003425..1004750) 1 NC_013174.1 KEGG: scl:sce0310 acetyltransferase; acetyltransferase 1004750 8380126 Jden_0949 Jonesia denitrificans DSM 20603 acetyltransferase YP_003160908.1 1003425 R 471856 CDS YP_003160909.1 256832182 8380127 complement(1004791..1005909) 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2543 5,10- methylenetetrahydromethanopterin reductase; luciferase-like monooxygenase 1005909 8380127 Jden_0950 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003160909.1 1004791 R 471856 CDS YP_003160910.1 256832183 8380128 complement(1006020..1006595) 1 NC_013174.1 TIGRFAM: serine O-acetyltransferase; KEGG: tbd:Tbd_1162 serine O-acetyltransferase; serine O-acetyltransferase 1006595 8380128 Jden_0951 Jonesia denitrificans DSM 20603 serine O-acetyltransferase YP_003160910.1 1006020 R 471856 CDS YP_003160911.1 256832184 8380129 complement(1006726..1007661) 1 NC_013174.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: acr:Acry_2560 cysteine synthase A; cysteine synthase 1007661 8380129 Jden_0952 Jonesia denitrificans DSM 20603 cysteine synthase YP_003160911.1 1006726 R 471856 CDS YP_003160912.1 256832185 8381765 complement(1008346..1008447) 1 NC_013174.1 hypothetical protein 1008447 8381765 Jden_0953 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160912.1 1008346 R 471856 CDS YP_003160913.1 256832186 8380131 1008503..1009870 1 NC_013174.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: bha:BH3053 trigger factor; trigger factor 1009870 8380131 Jden_0954 Jonesia denitrificans DSM 20603 trigger factor YP_003160913.1 1008503 D 471856 CDS YP_003160914.1 256832187 8380132 1010054..1010677 1 NC_013174.1 PFAM: peptidase S14 ClpP; KEGG: spe:Spro_1095 ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase Clp 1010677 8380132 Jden_0955 Jonesia denitrificans DSM 20603 endopeptidase Clp YP_003160914.1 1010054 D 471856 CDS YP_003160915.1 256832188 8380133 1010706..1011413 1 NC_013174.1 PFAM: peptidase S14 ClpP; KEGG: mgm:Mmc1_3642 ATP-dependent Clp protease proteolytic subunit ClpP; endopeptidase Clp 1011413 8380133 Jden_0956 Jonesia denitrificans DSM 20603 endopeptidase Clp YP_003160915.1 1010706 D 471856 CDS YP_003160916.1 256832189 8380134 1011555..1012832 1 NC_013174.1 KEGG: ban:BA4704 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 1012832 8380134 Jden_0957 Jonesia denitrificans DSM 20603 ATP-dependent Clp protease ATP-binding subunit ClpX YP_003160916.1 1011555 D 471856 CDS YP_003160917.1 256832190 8380135 1012838..1013197 1 NC_013174.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: bcs:BCAN_A1863 chorismate mutase; chorismate mutase 1013197 8380135 Jden_0958 Jonesia denitrificans DSM 20603 chorismate mutase YP_003160917.1 1012838 D 471856 CDS YP_003160918.1 256832191 8380136 complement(1013286..1014068) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0685 ABC transporter related; ABC transporter 1014068 8380136 Jden_0959 Jonesia denitrificans DSM 20603 ABC transporter YP_003160918.1 1013286 R 471856 CDS YP_003160919.1 256832192 8380137 complement(1014065..1014904) 1 NC_013174.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0684 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1014904 8380137 Jden_0960 Jonesia denitrificans DSM 20603 polar amino acid ABC transporter inner membrane subunit YP_003160919.1 1014065 R 471856 CDS YP_003160920.1 256832193 8380138 complement(1014901..1015677) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: acr:Acry_0683 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1015677 8380138 Jden_0961 Jonesia denitrificans DSM 20603 family 3 extracellular solute-binding protein YP_003160920.1 1014901 R 471856 CDS YP_003160921.1 256832194 8380139 complement(1015866..1017680) 1 NC_013174.1 PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1017680 8380139 Jden_0962 Jonesia denitrificans DSM 20603 AMP-dependent synthetase and ligase YP_003160921.1 1015866 R 471856 CDS YP_003160922.1 256832195 8380140 complement(1017705..1020410) 1 NC_013174.1 KEGG: scl:sce5134 valyl-tRNA synthetase; tRNA synthetase valyl/leucyl anticodon-binding 1020410 8380140 Jden_0963 Jonesia denitrificans DSM 20603 tRNA synthetase valyl/leucyl anticodon-binding YP_003160922.1 1017705 R 471856 CDS YP_003160923.1 256832196 8380141 1020593..1021408 1 NC_013174.1 TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: bpy:Bphyt_4255 F420-dependent oxidoreductase; F420-dependent oxidoreductase 1021408 8380141 Jden_0964 Jonesia denitrificans DSM 20603 F420-dependent oxidoreductase YP_003160923.1 1020593 D 471856 CDS YP_003160924.1 256832197 8380142 complement(1021432..1022313) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b20058 putative ABC transporter ATP- binding protein; ABC transporter 1022313 8380142 Jden_0965 Jonesia denitrificans DSM 20603 ABC transporter YP_003160924.1 1021432 R 471856 CDS YP_003160925.1 256832198 8380143 complement(1022310..1023419) 1 NC_013174.1 PFAM: transport system permease protein; KEGG: rsh:Rsph17029_3037 transport system permease protein; transport system permease 1023419 8380143 Jden_0966 Jonesia denitrificans DSM 20603 transport system permease YP_003160925.1 1022310 R 471856 CDS YP_003160926.1 256832199 8380144 complement(1023425..1024492) 1 NC_013174.1 PFAM: periplasmic binding protein; KEGG: sit:TM1040_2934 periplasmic binding protein; periplasmic binding protein 1024492 8380144 Jden_0967 Jonesia denitrificans DSM 20603 periplasmic binding protein YP_003160926.1 1023425 R 471856 CDS YP_003160927.1 256832200 8380145 complement(1024622..1025437) 1 NC_013174.1 KEGG: hypothetical protein; K00286 pyrroline-5- carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 1025437 8380145 Jden_0968 Jonesia denitrificans DSM 20603 pyrroline-5-carboxylate reductase YP_003160927.1 1024622 R 471856 CDS YP_003160928.1 256832201 8380146 1025721..1025987 1 NC_013174.1 hypothetical protein 1025987 8380146 Jden_0969 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160928.1 1025721 D 471856 CDS YP_003160929.1 256832202 8380147 1026351..1029569 1 NC_013174.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: rfe:RF_0423 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1029569 8380147 Jden_0970 Jonesia denitrificans DSM 20603 isoleucyl-tRNA synthetase YP_003160929.1 1026351 D 471856 CDS YP_003160930.1 256832203 8380148 1029619..1031010 1 NC_013174.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1031010 8380148 Jden_0971 Jonesia denitrificans DSM 20603 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_003160930.1 1029619 D 471856 CDS YP_003160931.1 256832204 8380149 1031127..1032122 1 NC_013174.1 KEGG: scl:sce2491 Glycerone kinase DAK1 domain- containing protein; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 1032122 8380149 Jden_0972 Jonesia denitrificans DSM 20603 dihydroxyacetone kinase subunit DhaK YP_003160931.1 1031127 D 471856 CDS YP_003160932.1 256832205 8380150 1032143..1032793 1 NC_013174.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: gdi:GDI0264 putative PTS-dependent dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaL 1032793 8380150 Jden_0973 Jonesia denitrificans DSM 20603 dihydroxyacetone kinase subunit DhaL YP_003160932.1 1032143 D 471856 CDS YP_003160933.1 256832206 8380151 1032783..1033535 1 NC_013174.1 TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; PTS system fructose subfamily IIA component; KEGG: spe:Spro_4270 dihydroxyacetone kinase subunit M; dihydroxyacetone kinase, phosphotransfer subunit 1033535 8380151 Jden_0974 Jonesia denitrificans DSM 20603 dihydroxyacetone kinase, phosphotransfer subunit YP_003160933.1 1032783 D 471856 CDS YP_003160934.1 256832207 8380152 1033532..1033963 1 NC_013174.1 hypothetical protein 1033963 8380152 Jden_0975 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160934.1 1033532 D 471856 CDS YP_003160935.1 256832208 8380153 1034007..1034450 1 NC_013174.1 KEGG: hypothetical protein; K00940 nucleoside- diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1034450 8380153 Jden_0976 Jonesia denitrificans DSM 20603 nucleoside-diphosphate kinase YP_003160935.1 1034007 D 471856 CDS YP_003160936.1 256832209 8380154 1034451..1037969 1 NC_013174.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pca:Pcar_2356 chromosome segregation SMC protein; chromosome segregation protein SMC 1037969 8380154 Jden_0977 Jonesia denitrificans DSM 20603 chromosome segregation protein SMC YP_003160936.1 1034451 D 471856 CDS YP_003160937.1 256832210 8380155 1038033..1038548 1 NC_013174.1 hypothetical protein 1038548 8380155 Jden_0978 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160937.1 1038033 D 471856 CDS YP_003160938.1 256832211 8380156 1038574..1039749 1 NC_013174.1 KEGG: glo:Glov_3496 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1039749 8380156 Jden_0979 Jonesia denitrificans DSM 20603 signal recognition particle-docking protein FtsY YP_003160938.1 1038574 D 471856 CDS YP_003160939.1 256832212 8380157 1039909..1041183 1 NC_013174.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dal:Dalk_5098 ammonium transporter; ammonium transporter 1041183 8380157 Jden_0980 Jonesia denitrificans DSM 20603 ammonium transporter YP_003160939.1 1039909 D 471856 CDS YP_003160940.1 256832213 8380158 1041180..1041518 1 NC_013174.1 PFAM: nitrogen regulatory protein P-II; KEGG: rce:RC1_1257 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1041518 8380158 Jden_0981 Jonesia denitrificans DSM 20603 nitrogen regulatory protein P-II YP_003160940.1 1041180 D 471856 CDS YP_003160941.1 256832214 8380159 1041594..1043309 1 NC_013174.1 KEGG: ank:AnaeK_2164 UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 1043309 8380159 Jden_0982 Jonesia denitrificans DSM 20603 UTP-GlnB uridylyltransferase, GlnD YP_003160941.1 1041594 D 471856 CDS YP_003160942.1 256832215 8380160 1043443..1045020 1 NC_013174.1 KEGG: glo:Glov_2449 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1045020 8380160 Jden_0983 Jonesia denitrificans DSM 20603 signal recognition particle protein YP_003160942.1 1043443 D 471856 CDS YP_003160943.1 256832216 8380161 1045022..1046098 1 NC_013174.1 PFAM: amidohydrolase; KEGG: ccs:CCNA_00302 parathion hydrolase; amidohydrolase 1046098 8380161 Jden_0984 Jonesia denitrificans DSM 20603 amidohydrolase YP_003160943.1 1045022 D 471856 CDS YP_003160944.1 256832217 8380162 1046294..1046704 1 NC_013174.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: swi:Swit_2657 30S ribosomal protein S16; 30S ribosomal protein S16 1046704 8380162 Jden_0985 Jonesia denitrificans DSM 20603 30S ribosomal protein S16 YP_003160944.1 1046294 D 471856 CDS YP_003160945.1 256832218 8380163 1046704..1046943 1 NC_013174.1 KEGG: mxa:MXAN_3546 KH domain protein; KH domain-containing protein 1046943 8380163 Jden_0986 Jonesia denitrificans DSM 20603 KH domain-containing protein YP_003160945.1 1046704 D 471856 CDS YP_003160946.1 256832219 8380164 1047025..1047579 1 NC_013174.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: bra:BRADO0377 16S rRNA processing protein, putative function; 16S rRNA processing protein RimM 1047579 8380164 Jden_0987 Jonesia denitrificans DSM 20603 16S rRNA processing protein RimM YP_003160946.1 1047025 D 471856 CDS YP_003160947.1 256832220 8380165 1047576..1048460 1 NC_013174.1 PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: glo:Glov_2453 tRNA (guanine-N1)- methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 1048460 8380165 Jden_0988 Jonesia denitrificans DSM 20603 tRNA (guanine-N(1)-)-methyltransferase YP_003160947.1 1047576 D 471856 CDS YP_003160948.1 256832221 8380166 1048588..1048944 1 NC_013174.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: gur:Gura_3758 50S ribosomal protein L19; 50S ribosomal protein L19 1048944 8380166 Jden_0989 Jonesia denitrificans DSM 20603 50S ribosomal protein L19 YP_003160948.1 1048588 D 471856 CDS YP_003160949.1 256832222 8380167 1048963..1049817 1 NC_013174.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gsu:GSU1267 signal peptidase I; signal peptidase I 1049817 8380167 Jden_0990 Jonesia denitrificans DSM 20603 signal peptidase I YP_003160949.1 1048963 D 471856 CDS YP_003160950.1 256832223 8380168 1049835..1050746 1 NC_013174.1 PFAM: ribonuclease HII/HIII; KEGG: cak:Caul_4366 ribonuclease H; Ribonuclease H 1050746 8380168 Jden_0991 Jonesia denitrificans DSM 20603 Ribonuclease H YP_003160950.1 1049835 D 471856 CDS YP_003160951.1 256832224 8380169 1050754..1051053 1 NC_013174.1 hypothetical protein 1051053 8380169 Jden_0992 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160951.1 1050754 D 471856 CDS YP_003160952.1 256832225 8380170 1051212..1051601 1 NC_013174.1 PFAM: protein of unknown function UPF0102; KEGG: gur:Gura_3756 hypothetical protein; hypothetical protein 1051601 8380170 Jden_0993 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160952.1 1051212 D 471856 CDS YP_003160953.1 256832226 8380171 1051598..1052620 1 NC_013174.1 PFAM: magnesium chelatase ChlI subunit; KEGG: scl:sce2623 ATPase with chaperone activity, ComM-like protein; magnesium chelatase ChlI subunit 1052620 8380171 Jden_0994 Jonesia denitrificans DSM 20603 magnesium chelatase ChlI subunit YP_003160953.1 1051598 D 471856 CDS YP_003160954.1 256832227 8380172 complement(1052640..1053491) 1 NC_013174.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: slo:Shew_1306 CMP/dCMP deaminase, zinc- binding; zinc-binding CMP/dCMP deaminase 1053491 8380172 Jden_0995 Jonesia denitrificans DSM 20603 zinc-binding CMP/dCMP deaminase YP_003160954.1 1052640 R 471856 CDS YP_003160955.1 256832228 8380173 complement(1053686..1055425) 1 NC_013174.1 KEGG: rce:RC1_1141 hypothetical protein; hypothetical protein 1055425 8380173 Jden_0996 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160955.1 1053686 R 471856 CDS YP_003160956.1 256832229 8380174 complement(1055425..1055673) 1 NC_013174.1 KEGG: ajs:Ajs_2216 hypothetical protein; hypothetical protein 1055673 8380174 Jden_0997 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160956.1 1055425 R 471856 CDS YP_003160957.1 256832230 8380175 complement(1055670..1056605) 1 NC_013174.1 KEGG: bcs:BCAN_B0381 hypothetical protein; hypothetical protein 1056605 8380175 Jden_0998 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160957.1 1055670 R 471856 CDS YP_003160958.1 256832231 8380176 complement(1057349..1060039) 1 NC_013174.1 KEGG: gsu:GSU0763 helicase, putative; helicase 1060039 8380176 Jden_0999 Jonesia denitrificans DSM 20603 helicase YP_003160958.1 1057349 R 471856 CDS YP_003160959.1 256832232 8380177 1060151..1061338 1 NC_013174.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tgr:Tgr7_0193 smf protein; DNA protecting protein DprA 1061338 8380177 Jden_1000 Jonesia denitrificans DSM 20603 DNA protecting protein DprA YP_003160959.1 1060151 D 471856 CDS YP_003160960.1 256832233 8380178 1061589..1062590 1 NC_013174.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LI0111 site-specific recombinase XerC; integrase family protein 1062590 8380178 Jden_1001 Jonesia denitrificans DSM 20603 integrase family protein YP_003160960.1 1061589 D 471856 CDS YP_003160961.1 256832234 8380179 1062637..1063488 1 NC_013174.1 KEGG: mgm:Mmc1_3037 RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; RNA polymerase sigma 28 subunit FliA/WhiG 1063488 8380179 Jden_1002 Jonesia denitrificans DSM 20603 RNA polymerase sigma 28 subunit FliA/WhiG YP_003160961.1 1062637 D 471856 CDS YP_003160962.1 256832235 8380180 complement(1063506..1064018) 1 NC_013174.1 PFAM: Peptidase M23; KEGG: smt:Smal_2737 peptidase M23; peptidase M23 1064018 8380180 Jden_1003 Jonesia denitrificans DSM 20603 peptidase M23 YP_003160962.1 1063506 R 471856 CDS YP_003160963.1 256832236 8380181 1064373..1065224 1 NC_013174.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2; 30S ribosomal protein S2 1065224 8380181 Jden_1004 Jonesia denitrificans DSM 20603 30S ribosomal protein S2 YP_003160963.1 1064373 D 471856 CDS YP_003160964.1 256832237 8380182 1065294..1066133 1 NC_013174.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: sil:SPO1975 elongation factor Ts; translation elongation factor Ts 1066133 8380182 Jden_1005 Jonesia denitrificans DSM 20603 translation elongation factor Ts YP_003160964.1 1065294 D 471856 CDS YP_003160965.1 256832238 8380183 1066239..1066997 1 NC_013174.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: bcb:BCB4264_A3923 uridylate kinase; uridylate kinase 1066997 8380183 Jden_1006 Jonesia denitrificans DSM 20603 uridylate kinase YP_003160965.1 1066239 D 471856 CDS YP_003160966.1 256832239 8380184 1067046..1067603 1 NC_013174.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: bha:BH2424 ribosome recycling factor; ribosome recycling factor 1067603 8380184 Jden_1007 Jonesia denitrificans DSM 20603 ribosome recycling factor YP_003160966.1 1067046 D 471856 CDS YP_003160967.1 256832240 8380185 1067603..1068472 1 NC_013174.1 PFAM: phosphatidate cytidylyltransferase; KEGG: aeh:Mlg_1858 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1068472 8380185 Jden_1008 Jonesia denitrificans DSM 20603 phosphatidate cytidylyltransferase YP_003160967.1 1067603 D 471856 CDS YP_003160968.1 256832241 8380186 1068505..1069635 1 NC_013174.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: afw:Anae109_2180 radical SAM protein; radical SAM enzyme, Cfr family 1069635 8380186 Jden_1009 Jonesia denitrificans DSM 20603 radical SAM enzyme, Cfr family YP_003160968.1 1068505 D 471856 CDS YP_003160969.1 256832242 8380187 1069645..1070184 1 NC_013174.1 hypothetical protein 1070184 8380187 Jden_1010 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160969.1 1069645 D 471856 CDS YP_003160970.1 256832243 8380188 1070181..1071404 1 NC_013174.1 KEGG: smt:Smal_1259 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1071404 8380188 Jden_1011 Jonesia denitrificans DSM 20603 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003160970.1 1070181 D 471856 CDS YP_003160971.1 256832244 8380189 1071413..1072729 1 NC_013174.1 PFAM: peptidase M50; KEGG: dol:Dole_0481 putative membrane-associated zinc metalloprotease; peptidase M50 1072729 8380189 Jden_1012 Jonesia denitrificans DSM 20603 peptidase M50 YP_003160971.1 1071413 D 471856 CDS YP_003160972.1 256832245 8380190 1072849..1074000 1 NC_013174.1 KEGG: gsu:GSU1459 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1074000 8380190 Jden_1013 Jonesia denitrificans DSM 20603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003160972.1 1072849 D 471856 CDS YP_003160973.1 256832246 8380191 1074007..1074906 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1267 hypothetical protein; N-acetyltransferase GCN5 1074906 8380191 Jden_1014 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160973.1 1074007 D 471856 CDS YP_003160974.1 256832247 8380192 1074951..1076735 1 NC_013174.1 KEGG: bmj:BMULJ_00441 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; prolyl-tRNA synthetase 1076735 8380192 Jden_1015 Jonesia denitrificans DSM 20603 prolyl-tRNA synthetase YP_003160974.1 1074951 D 471856 CDS YP_003160975.1 256832248 8380193 complement(1076830..1077888) 1 NC_013174.1 KEGG: azo:azo1098 hypothetical protein; hypothetical protein 1077888 8380193 Jden_1016 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160975.1 1076830 R 471856 CDS YP_003160976.1 256832249 8380194 1078060..1078593 1 NC_013174.1 PFAM: protein of unknown function DUF150; KEGG: mxa:MXAN_2065 hypothetical protein; hypothetical protein 1078593 8380194 Jden_1017 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160976.1 1078060 D 471856 CDS YP_003160977.1 256832250 8380195 1078596..1079660 1 NC_013174.1 KEGG: bha:BH2416 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; NusA antitermination factor 1079660 8380195 Jden_1018 Jonesia denitrificans DSM 20603 NusA antitermination factor YP_003160977.1 1078596 D 471856 CDS YP_003160978.1 256832251 8380196 1080345..1083359 1 NC_013174.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Ras family protein; KEGG: gbm:Gbem_1302 translation initiation factor IF-2; translation initiation factor IF-2 1083359 8380196 Jden_1019 Jonesia denitrificans DSM 20603 translation initiation factor IF-2 YP_003160978.1 1080345 D 471856 CDS YP_003160979.1 256832252 8380197 1083474..1083935 1 NC_013174.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: bsu:BSU16650 ribosome-binding factor A; ribosome-binding factor A 1083935 8380197 Jden_1020 Jonesia denitrificans DSM 20603 ribosome-binding factor A YP_003160979.1 1083474 D 471856 CDS YP_003160980.1 256832253 8380198 1083932..1084933 1 NC_013174.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase II; KEGG: prw:PsycPRwf_0159 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 1084933 8380198 Jden_1021 Jonesia denitrificans DSM 20603 tRNA pseudouridine synthase B YP_003160980.1 1083932 D 471856 CDS YP_003160981.1 256832254 8380199 1084930..1085877 1 NC_013174.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: glo:Glov_1649 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1085877 8380199 Jden_1022 Jonesia denitrificans DSM 20603 riboflavin biosynthesis protein RibF YP_003160981.1 1084930 D 471856 CDS YP_003160982.1 256832255 8380200 1086023..1087933 1 NC_013174.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: GH21354 gene product from transcript GH21354- RA; N-acetylmuramoyl-L-alanine amidase family 2 protein 1087933 8380200 Jden_1023 Jonesia denitrificans DSM 20603 N-acetylmuramoyl-L-alanine amidase family 2 protein YP_003160982.1 1086023 D 471856 CDS YP_003160983.1 256832256 8380201 1088056..1088325 1 NC_013174.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dds:Ddes_0055 ribosomal protein S15; 30S ribosomal protein S15 1088325 8380201 Jden_1024 Jonesia denitrificans DSM 20603 30S ribosomal protein S15 YP_003160983.1 1088056 D 471856 CDS YP_003160984.1 256832257 8380202 1088539..1090746 1 NC_013174.1 KEGG: bha:BH2407 polynucleotide phosphorylase/polyadenylase; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 1090746 8380202 Jden_1025 Jonesia denitrificans DSM 20603 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase YP_003160984.1 1088539 D 471856 CDS YP_003160985.1 256832258 8380203 1090747..1092066 1 NC_013174.1 PFAM: peptidase M16 domain protein; KEGG: baa:BA_4413 insulinase (peptidase family M16); processing peptidase 1092066 8380203 Jden_1026 Jonesia denitrificans DSM 20603 processing peptidase YP_003160985.1 1090747 D 471856 CDS YP_003160986.1 256832259 8380204 1092092..1092847 1 NC_013174.1 KEGG: bha:BH1680 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 1092847 8380204 Jden_1027 Jonesia denitrificans DSM 20603 dihydrodipicolinate reductase YP_003160986.1 1092092 D 471856 CDS YP_003160987.1 256832260 8380205 1092844..1093347 1 NC_013174.1 hypothetical protein 1093347 8380205 Jden_1028 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160987.1 1092844 D 471856 CDS YP_003160988.1 256832261 8380206 complement(1093344..1093889) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: har:HEAR0849 putative acetyltransferase; N-acetyltransferase GCN5 1093889 8380206 Jden_1029 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003160988.1 1093344 R 471856 CDS YP_003160989.1 256832262 8380207 1094062..1094862 1 NC_013174.1 KEGG: mpt:Mpe_A2051 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 1094862 8380207 Jden_1030 Jonesia denitrificans DSM 20603 thymidylate synthase YP_003160989.1 1094062 D 471856 CDS YP_003160990.1 256832263 8380208 1094859..1095434 1 NC_013174.1 PFAM: dihydrofolate reductase region; KEGG: dihydrofolate reductase; Dihydrofolate reductase 1095434 8380208 Jden_1031 Jonesia denitrificans DSM 20603 Dihydrofolate reductase YP_003160990.1 1094859 D 471856 CDS YP_003160991.1 256832264 8380209 1095440..1096363 1 NC_013174.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: cvi:CV_2048 dihydrodipicolinate synthase; dihydrodipicolinate synthase 1096363 8380209 Jden_1032 Jonesia denitrificans DSM 20603 dihydrodipicolinate synthase YP_003160991.1 1095440 D 471856 CDS YP_003160992.1 256832265 8380210 1096378..1098063 1 NC_013174.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: glo:Glov_3415 beta-lactamase domain protein; beta-lactamase domain-containing protein 1098063 8380210 Jden_1033 Jonesia denitrificans DSM 20603 beta-lactamase domain-containing protein YP_003160992.1 1096378 D 471856 CDS YP_003160993.1 256832266 8380211 1098255..1101011 1 NC_013174.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_2445 cell divisionFtsK/SpoIIIE; cell division protein FtsK 1101011 8380211 Jden_1034 Jonesia denitrificans DSM 20603 cell division protein FtsK YP_003160993.1 1098255 D 471856 CDS YP_003160994.1 256832267 8380212 1101090..1101695 1 NC_013174.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bha:BH2386 phosphatidylglycerophosphate synthase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1101695 8380212 Jden_1035 Jonesia denitrificans DSM 20603 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_003160994.1 1101090 D 471856 CDS YP_003160995.1 256832268 8380213 1101692..1102228 1 NC_013174.1 PFAM: CinA domain protein; KEGG: dps:DP2957 competence-damage inducible protein (CinA); CinA domain-containing protein 1102228 8380213 Jden_1036 Jonesia denitrificans DSM 20603 CinA domain-containing protein YP_003160995.1 1101692 D 471856 CDS YP_003160996.1 256832269 8380214 1102402..1102701 1 NC_013174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mag:amb0168 anaerobic benzoate catabolism transcriptional regulator; XRE family transcriptional regulator 1102701 8380214 Jden_1037 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003160996.1 1102402 D 471856 CDS YP_003160997.1 256832270 8380215 complement(1102757..1103611) 1 NC_013174.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding; KEGG: afw:Anae109_1725 DNA-(apurinic or apyrimidinic site) lyase; formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 1103611 8380215 Jden_1038 Jonesia denitrificans DSM 20603 formamidopyrimidine-DNA glycosylase catalytic domain-containing protein YP_003160997.1 1102757 R 471856 CDS YP_003160998.1 256832271 8380216 complement(1103598..1108454) 1 NC_013174.1 PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce3970 putative ATP-dependent helicase; DEAD/DEAH box helicase 1108454 8380216 Jden_1039 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003160998.1 1103598 R 471856 CDS YP_003160999.1 256832272 8380217 1108628..1108894 1 NC_013174.1 hypothetical protein 1108894 8380217 Jden_1040 Jonesia denitrificans DSM 20603 hypothetical protein YP_003160999.1 1108628 D 471856 CDS YP_003161000.1 256832273 8380218 1109146..1110240 1 NC_013174.1 KEGG: hha:Hhal_1655 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1110240 8380218 Jden_1041 Jonesia denitrificans DSM 20603 recA protein YP_003161000.1 1109146 D 471856 CDS YP_003161001.1 256832274 8380219 1110246..1110776 1 NC_013174.1 PFAM: regulatory protein RecX; KEGG: scl:sce0207 hypothetical protein; regulatory protein RecX 1110776 8380219 Jden_1042 Jonesia denitrificans DSM 20603 regulatory protein RecX YP_003161001.1 1110246 D 471856 CDS YP_003161002.1 256832275 8380220 1110899..1112365 1 NC_013174.1 KEGG: dds:Ddes_1693 RNA binding metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase 1112365 8380220 Jden_1043 Jonesia denitrificans DSM 20603 RNA binding metal dependent phosphohydrolase YP_003161002.1 1110899 D 471856 CDS YP_003161003.1 256832276 8380221 1112527..1114131 1 NC_013174.1 KEGG: bha:BH2372 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 1114131 8380221 Jden_1044 Jonesia denitrificans DSM 20603 MiaB family RNA modification protein YP_003161003.1 1112527 D 471856 CDS YP_003161004.1 256832277 8380222 complement(1114182..1114709) 1 NC_013174.1 hypothetical protein 1114709 8380222 Jden_1045 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161004.1 1114182 R 471856 CDS YP_003161005.1 256832278 8380223 complement(1114706..1115248) 1 NC_013174.1 hypothetical protein 1115248 8380223 Jden_1046 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161005.1 1114706 R 471856 CDS YP_003161006.1 256832279 8380224 1115343..1115936 1 NC_013174.1 hypothetical protein 1115936 8380224 Jden_1047 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161006.1 1115343 D 471856 CDS YP_003161007.1 256832280 8380225 1115933..1116910 1 NC_013174.1 KEGG: gme:Gmet_2052 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1116910 8380225 Jden_1048 Jonesia denitrificans DSM 20603 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003161007.1 1115933 D 471856 CDS YP_003161008.1 256832281 8380226 1116907..1117821 1 NC_013174.1 KEGG: scl:sce8155 hypothetical protein; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 1117821 8380226 Jden_1049 Jonesia denitrificans DSM 20603 diaminopimelate epimerase YP_003161008.1 1116907 D 471856 CDS YP_003161009.1 256832282 8380227 complement(1117818..1118495) 1 NC_013174.1 PFAM: methyltransferase small; KEGG: bcu:BCAH820_0112 YbxB protein; methyltransferase small 1118495 8380227 Jden_1050 Jonesia denitrificans DSM 20603 methyltransferase small YP_003161009.1 1117818 R 471856 CDS YP_003161010.1 256832283 8380228 1118640..1120169 1 NC_013174.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: GTP-binding family protein; K03665 GTP- binding protein HflX; GTP-binding proten HflX 1120169 8380228 Jden_1051 Jonesia denitrificans DSM 20603 GTP-binding proten HflX YP_003161010.1 1118640 D 471856 CDS YP_003161011.1 256832284 8380229 1120255..1122264 1 NC_013174.1 SMART: helicase c2; KEGG: mxa:MXAN_6717 putative ATP-dependent helicase; helicase c2 1122264 8380229 Jden_1052 Jonesia denitrificans DSM 20603 helicase c2 YP_003161011.1 1120255 D 471856 CDS YP_003161012.1 256832285 8380230 1122308..1123306 1 NC_013174.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: scl:sce5245 L-lactate dehydrogenase; L-lactate dehydrogenase 1123306 8380230 Jden_1053 Jonesia denitrificans DSM 20603 L-lactate dehydrogenase YP_003161012.1 1122308 D 471856 CDS YP_003161013.1 256832286 8380231 complement(1123323..1124048) 1 NC_013174.1 KEGG: bcy:Bcer98_2344 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA 1124048 8380231 Jden_1054 Jonesia denitrificans DSM 20603 SOS-response transcriptional repressor, LexA YP_003161013.1 1123323 R 471856 CDS YP_003161014.1 256832287 8380232 1124337..1124774 1 NC_013174.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; Peptidoglycan-binding LysM 1124774 8380232 Jden_1055 Jonesia denitrificans DSM 20603 Peptidoglycan-binding LysM YP_003161014.1 1124337 D 471856 CDS YP_003161015.1 256832288 8380233 1124843..1125304 1 NC_013174.1 PFAM: ATP-cone domain protein; KEGG: glo:Glov_1748 ATP-cone domain protein; ATP-cone domain-containing protein 1125304 8380233 Jden_1056 Jonesia denitrificans DSM 20603 ATP-cone domain-containing protein YP_003161015.1 1124843 D 471856 CDS YP_003161016.1 256832289 8380234 complement(1125283..1126320) 1 NC_013174.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase; aldo/keto reductase 1126320 8380234 Jden_1057 Jonesia denitrificans DSM 20603 aldo/keto reductase YP_003161016.1 1125283 R 471856 CDS YP_003161017.1 256832290 8380235 complement(1126403..1127653) 1 NC_013174.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: abm:ABSDF0338 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1127653 8380235 Jden_1058 Jonesia denitrificans DSM 20603 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_003161017.1 1126403 R 471856 CDS YP_003161018.1 256832291 8380236 complement(1127716..1129914) 1 NC_013174.1 KEGG: bcb:BCB4264_A2823 UvrD/Rep helicase family protein; superfamily I DNA and RNA helicase-like protein 1129914 8380236 Jden_1059 Jonesia denitrificans DSM 20603 superfamily I DNA and RNA helicase-like protein YP_003161018.1 1127716 R 471856 CDS YP_003161019.1 256832292 8380237 1130162..1131094 1 NC_013174.1 PFAM: protein of unknown function DUF75; hypothetical protein 1131094 8380237 Jden_1060 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161019.1 1130162 D 471856 CDS YP_003161020.1 256832293 8380238 complement(1131104..1132009) 1 NC_013174.1 KEGG: har:HEAR1704 hypothetical protein; hypothetical protein 1132009 8380238 Jden_1061 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161020.1 1131104 R 471856 CDS YP_003161021.1 256832294 8380239 1132090..1132596 1 NC_013174.1 hypothetical protein 1132596 8380239 Jden_1062 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161021.1 1132090 D 471856 CDS YP_003161022.1 256832295 8380240 1132598..1133839 1 NC_013174.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1133839 8380240 Jden_1063 Jonesia denitrificans DSM 20603 DNA-directed DNA polymerase YP_003161022.1 1132598 D 471856 CDS YP_003161023.1 256832296 8380241 1133896..1134291 1 NC_013174.1 hypothetical protein 1134291 8380241 Jden_1064 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161023.1 1133896 D 471856 CDS YP_003161024.1 256832297 8380242 1134772..1135224 1 NC_013174.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ; MraZ protein 1135224 8380242 Jden_1065 Jonesia denitrificans DSM 20603 MraZ protein YP_003161024.1 1134772 D 471856 CDS YP_003161025.1 256832298 8380243 1135344..1136348 1 NC_013174.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: bcy:Bcer98_2568 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 1136348 8380243 Jden_1066 Jonesia denitrificans DSM 20603 S-adenosyl-methyltransferase MraW YP_003161025.1 1135344 D 471856 CDS YP_003161026.1 256832299 8380244 1136345..1136767 1 NC_013174.1 hypothetical protein 1136767 8380244 Jden_1067 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161026.1 1136345 D 471856 CDS YP_003161027.1 256832300 8380245 1137182..1138921 1 NC_013174.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gbm:Gbem_0485 penicillin-binding protein transpeptidase; peptidoglycan glycosyltransferase 1138921 8380245 Jden_1068 Jonesia denitrificans DSM 20603 peptidoglycan glycosyltransferase YP_003161027.1 1137182 D 471856 CDS YP_003161028.1 256832301 8380246 1139102..1140706 1 NC_013174.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sfu:Sfum_3466 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramyl tripeptide synthetase 1140706 8380246 Jden_1069 Jonesia denitrificans DSM 20603 UDP-N-acetylmuramyl tripeptide synthetase YP_003161028.1 1139102 D 471856 CDS YP_003161029.1 256832302 8380247 1140651..1142180 1 NC_013174.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aeh:Mlg_2197 UDP-N-acetylmuramoyl-tripeptide-- D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase 1142180 8380247 Jden_1070 Jonesia denitrificans DSM 20603 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase YP_003161029.1 1140651 D 471856 CDS YP_003161030.1 256832303 8380248 1142177..1143259 1 NC_013174.1 KEGG: bcr:BCAH187_A3966 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide- transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 1143259 8380248 Jden_1071 Jonesia denitrificans DSM 20603 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003161030.1 1142177 D 471856 CDS YP_003161031.1 256832304 8380249 1143244..1144752 1 NC_013174.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: reu:Reut_A2981 UDP-N-acetylmuramoyl-L-alanyl- D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1144752 8380249 Jden_1072 Jonesia denitrificans DSM 20603 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003161031.1 1143244 D 471856 CDS YP_003161032.1 256832305 8380250 1144756..1146006 1 NC_013174.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dvm:DvMF_0957 cell division protein FtsW; cell division protein FtsW 1146006 8380250 Jden_1073 Jonesia denitrificans DSM 20603 cell division protein FtsW YP_003161032.1 1144756 D 471856 CDS YP_003161033.1 256832306 8380251 1146022..1147149 1 NC_013174.1 KEGG: dvu:DVU2504 UDP-N-acetylglucosamine--N- acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 1147149 8380251 Jden_1074 Jonesia denitrificans DSM 20603 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase YP_003161033.1 1146022 D 471856 CDS YP_003161034.1 256832307 8380252 1147146..1148624 1 NC_013174.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: atc:AGR_C_3796 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 1148624 8380252 Jden_1075 Jonesia denitrificans DSM 20603 UDP-N-acetylmuramate--L-alanine ligase YP_003161034.1 1147146 D 471856 CDS YP_003161035.1 256832308 8380253 1148621..1149631 1 NC_013174.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: tcx:Tcr_0586 cell division protein FtsQ; Polypeptide-transport-associated domain-containing protein FtsQ-type 1149631 8380253 Jden_1076 Jonesia denitrificans DSM 20603 Polypeptide-transport-associated domain-containing protein FtsQ-type YP_003161035.1 1148621 D 471856 CDS YP_003161036.1 256832309 8380254 1149827..1151149 1 NC_013174.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; cell division protein FtsZ 1151149 8380254 Jden_1077 Jonesia denitrificans DSM 20603 cell division protein FtsZ YP_003161036.1 1149827 D 471856 CDS YP_003161037.1 256832310 8380255 1151161..1151916 1 NC_013174.1 PFAM: protein of unknown function DUF152; KEGG: mxa:MXAN_2999 conserved hypothetical protein TIGR00726; hypothetical protein 1151916 8380255 Jden_1078 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161037.1 1151161 D 471856 CDS YP_003161038.1 256832311 8380256 1152132..1152614 1 NC_013174.1 PFAM: protein of unknown function DUF552; KEGG: bha:BH2549 hypothetical protein; hypothetical protein 1152614 8380256 Jden_1079 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161038.1 1152132 D 471856 CDS YP_003161039.1 256832312 8380257 1152620..1152916 1 NC_013174.1 PFAM: protein of unknown function YGGT; KEGG: oan:Oant_0989 protein of unknown function YGGT; hypothetical protein 1152916 8380257 Jden_1080 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161039.1 1152620 D 471856 CDS YP_003161040.1 256832313 8380258 1153081..1153698 1 NC_013174.1 PFAM: DivIVA family protein; KEGG: bsu:BSU15420 cell-division initiation protein; DivIVA family protein 1153698 8380258 Jden_1081 Jonesia denitrificans DSM 20603 DivIVA family protein YP_003161040.1 1153081 D 471856 CDS YP_003161041.1 256832314 8380259 1153816..1154268 1 NC_013174.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sat:SYN_01337 DnaK suppressor protein; TraR/DksA family transcriptional regulator 1154268 8380259 Jden_1082 Jonesia denitrificans DSM 20603 TraR/DksA family transcriptional regulator YP_003161041.1 1153816 D 471856 CDS YP_003161042.1 256832315 8380260 1154327..1154917 1 NC_013174.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: neu:NE1148 signal peptidase II; lipoprotein signal peptidase 1154917 8380260 Jden_1083 Jonesia denitrificans DSM 20603 lipoprotein signal peptidase YP_003161042.1 1154327 D 471856 CDS YP_003161043.1 256832316 8380261 1154914..1155855 1 NC_013174.1 KEGG: tgr:Tgr7_0815 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; RluA family pseudouridine synthase 1155855 8380261 Jden_1084 Jonesia denitrificans DSM 20603 RluA family pseudouridine synthase YP_003161043.1 1154914 D 471856 CDS YP_003161044.1 256832317 8380262 1155855..1156361 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: csa:Csal_2448 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 1156361 8380262 Jden_1085 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161044.1 1155855 D 471856 CDS YP_003161045.1 256832318 8380263 1156423..1159968 1 NC_013174.1 KEGG: aba:Acid345_2747 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1159968 8380263 Jden_1086 Jonesia denitrificans DSM 20603 DNA polymerase III subunit alpha YP_003161045.1 1156423 D 471856 CDS YP_003161046.1 256832319 8380264 1159969..1160379 1 NC_013174.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; pyridoxamine 5'-phosphate oxidase-related FMN- binding 1160379 8380264 Jden_1087 Jonesia denitrificans DSM 20603 pyridoxamine 5'-phosphate oxidase-related FMN- binding YP_003161046.1 1159969 D 471856 CDS YP_003161047.1 256832320 8380265 complement(1160376..1160630) 1 NC_013174.1 PFAM: RNA-binding S4 domain protein; KEGG: dps:DP2177 hypothetical protein; RNA-binding S4 domain-containing protein 1160630 8380265 Jden_1088 Jonesia denitrificans DSM 20603 RNA-binding S4 domain-containing protein YP_003161047.1 1160376 R 471856 CDS YP_003161048.1 256832321 8380266 1160765..1162090 1 NC_013174.1 KEGG: bid:Bind_0668 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase 1162090 8380266 Jden_1089 Jonesia denitrificans DSM 20603 histidinol dehydrogenase YP_003161048.1 1160765 D 471856 CDS YP_003161049.1 256832322 8380267 1162147..1162914 1 NC_013174.1 PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aha:AHA_1426 DNA-binding transcriptional repressor MalI; transcriptional regulator, LacI family 1162914 8380267 Jden_1090 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003161049.1 1162147 D 471856 CDS YP_003161050.1 256832323 8380268 complement(1162967..1165333) 1 NC_013174.1 KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; RecQ familyATP-dependent DNA helicase 1165333 8380268 Jden_1091 Jonesia denitrificans DSM 20603 RecQ familyATP-dependent DNA helicase YP_003161050.1 1162967 R 471856 CDS YP_003161051.1 256832324 8380269 1165611..1166771 1 NC_013174.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bur:Bcep18194_C7445 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 1166771 8380269 Jden_1092 Jonesia denitrificans DSM 20603 histidinol-phosphate aminotransferase YP_003161051.1 1165611 D 471856 CDS YP_003161052.1 256832325 8380270 1166768..1167379 1 NC_013174.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: msl:Msil_2554 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1167379 8380270 Jden_1093 Jonesia denitrificans DSM 20603 imidazoleglycerol-phosphate dehydratase YP_003161052.1 1166768 D 471856 CDS YP_003161053.1 256832326 8380271 1167376..1167819 1 NC_013174.1 hypothetical protein 1167819 8380271 Jden_1094 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161053.1 1167376 D 471856 CDS YP_003161054.1 256832327 8380272 1167816..1168463 1 NC_013174.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: abc:ACICU_03431 glutamine amidotransferase; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1168463 8380272 Jden_1095 Jonesia denitrificans DSM 20603 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003161054.1 1167816 D 471856 CDS YP_003161055.1 256832328 8380273 1168524..1169255 1 NC_013174.1 KEGG: plu:plu0797 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein; bifunctional HisA/TrpF protein 1169255 8380273 Jden_1096 Jonesia denitrificans DSM 20603 bifunctional HisA/TrpF protein YP_003161055.1 1168524 D 471856 CDS YP_003161056.1 256832329 8380274 1169252..1169995 1 NC_013174.1 hypothetical protein 1169995 8380274 Jden_1097 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161056.1 1169252 D 471856 CDS YP_003161057.1 256832330 8380275 complement(1169992..1170729) 1 NC_013174.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: degPch3; serine protease DO-like protein; peptidase S1 and S6 chymotrypsin/Hap 1170729 8380275 Jden_1098 Jonesia denitrificans DSM 20603 peptidase S1 and S6 chymotrypsin/Hap YP_003161057.1 1169992 R 471856 CDS YP_003161058.1 256832331 8380276 complement(1170726..1171247) 1 NC_013174.1 KEGG: hha:Hhal_1880 chromosome segregation protein SMC; hypothetical protein 1171247 8380276 Jden_1099 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161058.1 1170726 R 471856 CDS YP_003161059.1 256832332 8380277 complement(1171439..1171795) 1 NC_013174.1 hypothetical protein 1171795 8380277 Jden_1100 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161059.1 1171439 R 471856 CDS YP_003161060.1 256832333 8380278 complement(1171984..1173429) 1 NC_013174.1 PFAM: Catalase domain protein; KEGG: bpt:Bpet0345 hypothetical protein; catalase 1173429 8380278 Jden_1101 Jonesia denitrificans DSM 20603 catalase YP_003161060.1 1171984 R 471856 CDS YP_003161061.1 256832334 8380279 complement(1173505..1173927) 1 NC_013174.1 PFAM: ferric-uptake regulator; KEGG: nis:NIS_1150 peroxide stress regulator; ferric uptake regulator, Fur family 1173927 8380279 Jden_1102 Jonesia denitrificans DSM 20603 ferric uptake regulator, Fur family YP_003161061.1 1173505 R 471856 CDS YP_003161062.1 256832335 8380280 1174264..1174965 1 NC_013174.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: sil:SPO2638 translation initiation factor IF- 3; translation initiation factor IF-3 1174965 8380280 Jden_1103 Jonesia denitrificans DSM 20603 translation initiation factor IF-3 YP_003161062.1 1174264 D 471856 CDS YP_003161063.1 256832336 8380281 1175086..1175280 1 NC_013174.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: aba:Acid345_0714 LSU ribosomal protein L35P; 50S ribosomal protein L35 1175280 8380281 Jden_1104 Jonesia denitrificans DSM 20603 50S ribosomal protein L35 YP_003161063.1 1175086 D 471856 CDS YP_003161064.1 256832337 8380282 1175338..1175724 1 NC_013174.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: oan:Oant_0800 ribosomal protein L20; 50S ribosomal protein L20 1175724 8380282 Jden_1105 Jonesia denitrificans DSM 20603 50S ribosomal protein L20 YP_003161064.1 1175338 D 471856 CDS YP_003161065.1 256832338 8380283 1175772..1176599 1 NC_013174.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bcy:Bcer98_3250 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1176599 8380283 Jden_1106 Jonesia denitrificans DSM 20603 tRNA/rRNA methyltransferase SpoU YP_003161065.1 1175772 D 471856 CDS YP_003161066.1 256832339 8380284 1176603..1177964 1 NC_013174.1 PFAM: amino acid permease-associated region; KEGG: xcv:XCV3131 amino acid transporter family protein; amino acid permease 1177964 8380284 Jden_1107 Jonesia denitrificans DSM 20603 amino acid permease YP_003161066.1 1176603 D 471856 CDS YP_003161067.1 256832340 8380285 1178000..1179064 1 NC_013174.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: xop:PXO_01387 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1179064 8380285 Jden_1108 Jonesia denitrificans DSM 20603 phenylalanyl-tRNA synthetase subunit alpha YP_003161067.1 1178000 D 471856 CDS YP_003161068.1 256832341 8380286 1179064..1181628 1 NC_013174.1 KEGG: afw:Anae109_1884 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 1181628 8380286 Jden_1109 Jonesia denitrificans DSM 20603 phenylalanyl-tRNA synthetase subunit beta YP_003161068.1 1179064 D 471856 CDS YP_003161069.1 256832342 8380287 complement(1181735..1181992) 1 NC_013174.1 hypothetical protein 1181992 8380287 Jden_1110 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161069.1 1181735 R 471856 CDS YP_003161070.1 256832343 8380288 1182121..1183179 1 NC_013174.1 KEGG: pde:Pden_1656 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 1183179 8380288 Jden_1111 Jonesia denitrificans DSM 20603 N-acetyl-gamma-glutamyl-phosphate reductase YP_003161070.1 1182121 D 471856 CDS YP_003161071.1 256832344 8380289 1183176..1184342 1 NC_013174.1 KEGG: dvm:DvMF_2872 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 1184342 8380289 Jden_1112 Jonesia denitrificans DSM 20603 arginine biosynthesis bifunctional protein ArgJ YP_003161071.1 1183176 D 471856 CDS YP_003161072.1 256832345 8380290 1184339..1185301 1 NC_013174.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sat:SYN_02154 acetylglutamate kinase; acetylglutamate kinase 1185301 8380290 Jden_1113 Jonesia denitrificans DSM 20603 acetylglutamate kinase YP_003161072.1 1184339 D 471856 CDS YP_003161073.1 256832346 8380291 1185298..1186560 1 NC_013174.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: gbm:Gbem_3636 acetylornithine and succinylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase 1186560 8380291 Jden_1114 Jonesia denitrificans DSM 20603 acetylornithine and succinylornithine aminotransferase YP_003161073.1 1185298 D 471856 CDS YP_003161074.1 256832347 8380292 1186565..1187497 1 NC_013174.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: afr:AFE_0405 ornithine carbamoyltransferase; ornithine carbamoyltransferase 1187497 8380292 Jden_1115 Jonesia denitrificans DSM 20603 ornithine carbamoyltransferase YP_003161074.1 1186565 D 471856 CDS YP_003161075.1 256832348 8380293 1187476..1188063 1 NC_013174.1 TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: bsu:BSU24250 arginine repressor; arginine repressor ArgR 1188063 8380293 Jden_1116 Jonesia denitrificans DSM 20603 arginine repressor ArgR YP_003161075.1 1187476 D 471856 CDS YP_003161076.1 256832349 8380294 1188060..1189301 1 NC_013174.1 KEGG: bsu:BSU29450 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 1189301 8380294 Jden_1117 Jonesia denitrificans DSM 20603 argininosuccinate synthase YP_003161076.1 1188060 D 471856 CDS YP_003161077.1 256832350 8380295 1189310..1190734 1 NC_013174.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pfo:Pfl01_2852 argininosuccinate lyase; argininosuccinate lyase 1190734 8380295 Jden_1118 Jonesia denitrificans DSM 20603 argininosuccinate lyase YP_003161077.1 1189310 D 471856 CDS YP_003161078.1 256832351 8380296 1190760..1191332 1 NC_013174.1 KEGG: bcr:BCAH187_A2829 putative uridine kinase; hypothetical protein 1191332 8380296 Jden_1119 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161078.1 1190760 D 471856 CDS YP_003161079.1 256832352 8380297 1191452..1192720 1 NC_013174.1 KEGG: bcy:Bcer98_3333 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; tyrosyl-tRNA synthetase 1192720 8380297 Jden_1120 Jonesia denitrificans DSM 20603 tyrosyl-tRNA synthetase YP_003161079.1 1191452 D 471856 CDS YP_003161080.1 256832353 8381769 1198715..1200571 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1200571 8381769 Jden_1121 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161080.1 1198715 D 471856 CDS YP_003161081.1 256832354 8380299 1200568..1201596 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bat:BAS4827 phosphatase; HAD-superfamily hydrolase 1201596 8380299 Jden_1122 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003161081.1 1200568 D 471856 CDS YP_003161082.1 256832355 8380300 1201659..1201808 1 NC_013174.1 hypothetical protein 1201808 8380300 Jden_1123 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161082.1 1201659 D 471856 CDS YP_003161083.1 256832356 8380301 1201805..1202737 1 NC_013174.1 KEGG: pca:Pcar_1058 rRNA methylase; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; hemolysin A 1202737 8380301 Jden_1124 Jonesia denitrificans DSM 20603 hemolysin A YP_003161083.1 1201805 D 471856 CDS YP_003161084.1 256832357 8380302 1202734..1203693 1 NC_013174.1 PFAM: ATP-NAD/AcoX kinase; KEGG: afw:Anae109_0775 ATP-NAD/AcoX kinase; NAD(+) kinase 1203693 8380302 Jden_1125 Jonesia denitrificans DSM 20603 NAD(+) kinase YP_003161084.1 1202734 D 471856 CDS YP_003161085.1 256832358 8380303 1203686..1205419 1 NC_013174.1 KEGG: bha:BH2776 DNA repair and genetic recombination; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; DNA repair protein RecN 1205419 8380303 Jden_1126 Jonesia denitrificans DSM 20603 DNA repair protein RecN YP_003161085.1 1203686 D 471856 CDS YP_003161086.1 256832359 8380304 1205425..1206624 1 NC_013174.1 PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: bha:BH2771 hypothetical protein; Thiamin pyrophosphokinase catalytic region 1206624 8380304 Jden_1127 Jonesia denitrificans DSM 20603 Thiamin pyrophosphokinase catalytic region YP_003161086.1 1205425 D 471856 CDS YP_003161087.1 256832360 8380305 1206679..1207692 1 NC_013174.1 KEGG: gme:Gmet_2478 methyl-accepting chemotaxis sensory transducer; hypothetical protein 1207692 8380305 Jden_1128 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161087.1 1206679 D 471856 CDS YP_003161088.1 256832361 8380306 1207692..1208594 1 NC_013174.1 KEGG: similar to GTPase, IMAP family member 8; hypothetical protein 1208594 8380306 Jden_1129 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161088.1 1207692 D 471856 CDS YP_003161089.1 256832362 8380307 1208584..1210200 1 NC_013174.1 PFAM: virulence factor MVIN family protein; KEGG: reh:H16_A3066 hypothetical membrane protein in MviN family; virulence factor MVIN family protein 1210200 8380307 Jden_1130 Jonesia denitrificans DSM 20603 virulence factor MVIN family protein YP_003161089.1 1208584 D 471856 CDS YP_003161090.1 256832363 8380308 1210197..1211270 1 NC_013174.1 PFAM: glycosyl transferase group 1; KEGG: cti:RALTA_A2365 putative glycosyl transferase, group 1; group 1 glycosyl transferase 1211270 8380308 Jden_1131 Jonesia denitrificans DSM 20603 group 1 glycosyl transferase YP_003161090.1 1210197 D 471856 CDS YP_003161091.1 256832364 8380309 1211376..1213052 1 NC_013174.1 KEGG: bha:BH3792 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; CTP synthase 1213052 8380309 Jden_1132 Jonesia denitrificans DSM 20603 CTP synthase YP_003161091.1 1211376 D 471856 CDS YP_003161092.1 256832365 8380310 1213045..1213722 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: noc:Noc_2512 NUDIX hydrolase; NUDIX hydrolase 1213722 8380310 Jden_1133 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003161092.1 1213045 D 471856 CDS YP_003161093.1 256832366 8380311 1214024..1216552 1 NC_013174.1 PFAM: glycoside hydrolase family 48; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein; glycoside hydrolase family protein 1216552 8380311 Jden_1134 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003161093.1 1214024 D 471856 CDS YP_003161094.1 256832367 8380312 complement(1216623..1217579) 1 NC_013174.1 PFAM: cytochrome oxidase assembly; KEGG: sus:Acid_4821 cytochrome oxidase assembly; cytochrome oxidase assembly 1217579 8380312 Jden_1135 Jonesia denitrificans DSM 20603 cytochrome oxidase assembly YP_003161094.1 1216623 R 471856 CDS YP_003161095.1 256832368 8380313 complement(1217585..1218316) 1 NC_013174.1 KEGG: cko:CKO_02699 hypothetical protein; hypothetical protein 1218316 8380313 Jden_1136 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161095.1 1217585 R 471856 CDS YP_003161096.1 256832369 8380314 complement(1218339..1219112) 1 NC_013174.1 PFAM: ABC-2 type transporter; KEGG: aha:AHA_1263 ABC transporter permease protein; ABC transporter 1219112 8380314 Jden_1137 Jonesia denitrificans DSM 20603 ABC transporter YP_003161096.1 1218339 R 471856 CDS YP_003161097.1 256832370 8380315 complement(1219109..1220044) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_1597 ABC transporter, ATP-binding protein; ABC transporter 1220044 8380315 Jden_1138 Jonesia denitrificans DSM 20603 ABC transporter YP_003161097.1 1219109 R 471856 CDS YP_003161098.1 256832371 8380316 1220234..1220992 1 NC_013174.1 KEGG: vsp:VS_2907 hypothetical protein; putative transcriptional regulator 1220992 8380316 Jden_1139 Jonesia denitrificans DSM 20603 putative transcriptional regulator YP_003161098.1 1220234 D 471856 CDS YP_003161099.1 256832372 8380317 1221045..1222490 1 NC_013174.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB; FeS assembly protein SufB 1222490 8380317 Jden_1140 Jonesia denitrificans DSM 20603 FeS assembly protein SufB YP_003161099.1 1221045 D 471856 CDS YP_003161100.1 256832373 8380318 1222490..1223713 1 NC_013174.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mxa:MXAN_1155 FeS assembly protein SufD; FeS assembly protein SufD 1223713 8380318 Jden_1141 Jonesia denitrificans DSM 20603 FeS assembly protein SufD YP_003161100.1 1222490 D 471856 CDS YP_003161101.1 256832374 8380319 1223710..1224054 1 NC_013174.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bpt:Bpet3740 phenylpropionate dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 1224054 8380319 Jden_1142 Jonesia denitrificans DSM 20603 Rieske (2Fe-2S) domain-containing protein YP_003161101.1 1223710 D 471856 CDS YP_003161102.1 256832375 8380320 1224066..1224827 1 NC_013174.1 KEGG: bcy:Bcer98_3579 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 1224827 8380320 Jden_1143 Jonesia denitrificans DSM 20603 FeS assembly ATPase SufC YP_003161102.1 1224066 D 471856 CDS YP_003161103.1 256832376 8380321 1224933..1226231 1 NC_013174.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccs:CCNA_01936 cysteine desulfurase/selenocysteine lyase; SufS subfamily cysteine desulfurase 1226231 8380321 Jden_1144 Jonesia denitrificans DSM 20603 SufS subfamily cysteine desulfurase YP_003161103.1 1224933 D 471856 CDS YP_003161104.1 256832377 8380322 1226296..1226832 1 NC_013174.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein; NifU family SUF system FeS assembly protein 1226832 8380322 Jden_1145 Jonesia denitrificans DSM 20603 NifU family SUF system FeS assembly protein YP_003161104.1 1226296 D 471856 CDS YP_003161105.1 256832378 8380323 1226829..1227158 1 NC_013174.1 PFAM: protein of unknown function DUF59; KEGG: nha:Nham_1459 hypothetical protein; hypothetical protein 1227158 8380323 Jden_1146 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161105.1 1226829 D 471856 CDS YP_003161106.1 256832379 8380324 complement(1227337..1227936) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1227936 8380324 Jden_1147 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161106.1 1227337 R 471856 CDS YP_003161107.1 256832380 8380325 complement(1228014..1228631) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1228631 8380325 Jden_1148 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161107.1 1228014 R 471856 CDS YP_003161108.1 256832381 8380326 1228787..1229290 1 NC_013174.1 PFAM: regulatory protein MarR; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: rme:Rmet_3619 transcriptional regulator, MarR family; transcriptional regulator, MarR family 1229290 8380326 Jden_1149 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003161108.1 1228787 D 471856 CDS YP_003161109.1 256832382 8380327 1229296..1229718 1 NC_013174.1 PFAM: OsmC family protein; KEGG: rme:Rmet_3618 OsmC-like protein; OsmC family protein 1229718 8380327 Jden_1150 Jonesia denitrificans DSM 20603 OsmC family protein YP_003161109.1 1229296 D 471856 CDS YP_003161110.1 256832383 8380328 complement(1229810..1230976) 1 NC_013174.1 KEGG: vei:Veis_2603 hypothetical protein; hypothetical protein 1230976 8380328 Jden_1151 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161110.1 1229810 R 471856 CDS YP_003161111.1 256832384 8380329 1231150..1232595 1 NC_013174.1 PFAM: fumarate lyase; KEGG: dar:Daro_0481 aspartate ammonia-lyase; fumarate lyase 1232595 8380329 Jden_1152 Jonesia denitrificans DSM 20603 fumarate lyase YP_003161111.1 1231150 D 471856 CDS YP_003161112.1 256832385 8380330 complement(1232552..1233019) 1 NC_013174.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; pyridoxamine 5'-phosphate oxidase-related FMN- binding 1233019 8380330 Jden_1153 Jonesia denitrificans DSM 20603 pyridoxamine 5'-phosphate oxidase-related FMN- binding YP_003161112.1 1232552 R 471856 CDS YP_003161113.1 256832386 8380331 1233093..1234115 1 NC_013174.1 PFAM: L-asparaginase II; KEGG: sil:SPO3349 L-asparaginase; L-asparaginase II 1234115 8380331 Jden_1154 Jonesia denitrificans DSM 20603 L-asparaginase II YP_003161113.1 1233093 D 471856 CDS YP_003161114.1 256832387 8380332 1234125..1234544 1 NC_013174.1 KEGG: scl:sce4713 hypothetical protein; hypothetical protein 1234544 8380332 Jden_1155 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161114.1 1234125 D 471856 CDS YP_003161115.1 256832388 8380333 complement(1234552..1235454) 1 NC_013174.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: mms:mma_2879 hypothetical protein; hypothetical protein 1235454 8380333 Jden_1156 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161115.1 1234552 R 471856 CDS YP_003161116.1 256832389 8380334 complement(1235470..1236141) 1 NC_013174.1 PFAM: cobalt transport protein; KEGG: rru:Rru_A3687 cobalt transport protein; cobalt transport protein 1236141 8380334 Jden_1157 Jonesia denitrificans DSM 20603 cobalt transport protein YP_003161116.1 1235470 R 471856 CDS YP_003161117.1 256832390 8380335 complement(1236138..1236854) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc00962 ABC transporter ATP-binding protein; ABC transporter 1236854 8380335 Jden_1158 Jonesia denitrificans DSM 20603 ABC transporter YP_003161117.1 1236138 R 471856 CDS YP_003161118.1 256832391 8380336 complement(1236864..1237559) 1 NC_013174.1 PFAM: BioY protein; KEGG: rlt:Rleg2_0581 BioY protein; BioY protein 1237559 8380336 Jden_1159 Jonesia denitrificans DSM 20603 BioY protein YP_003161118.1 1236864 R 471856 CDS YP_003161119.1 256832392 8380337 1237684..1239282 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO3397 ABC transporter ATP-binding protein; ABC transporter 1239282 8380337 Jden_1160 Jonesia denitrificans DSM 20603 ABC transporter YP_003161119.1 1237684 D 471856 CDS YP_003161120.1 256832393 8380338 complement(1239302..1240213) 1 NC_013174.1 KEGG: bpe:BP3738 hypothetical protein; hypothetical protein 1240213 8380338 Jden_1161 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161120.1 1239302 R 471856 CDS YP_003161121.1 256832394 8380339 complement(1240210..1240461) 1 NC_013174.1 hypothetical protein 1240461 8380339 Jden_1162 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161121.1 1240210 R 471856 CDS YP_003161122.1 256832395 8380340 complement(1240454..1240789) 1 NC_013174.1 hypothetical protein 1240789 8380340 Jden_1163 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161122.1 1240454 R 471856 CDS YP_003161123.1 256832396 8380341 1240924..1241640 1 NC_013174.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: aha:AHA_2251 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1241640 8380341 Jden_1164 Jonesia denitrificans DSM 20603 3-oxoacyl-ACP reductase YP_003161123.1 1240924 D 471856 CDS YP_003161124.1 256832397 8380342 1241687..1242454 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_6034 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 1242454 8380342 Jden_1165 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003161124.1 1241687 D 471856 CDS YP_003161125.1 256832398 8380343 1242462..1242977 1 NC_013174.1 PFAM: Phosphoglycerate mutase; KEGG: mlo:mll7959 hypothetical protein; putative phosphohistidine phosphatase, SixA 1242977 8380343 Jden_1166 Jonesia denitrificans DSM 20603 putative phosphohistidine phosphatase, SixA YP_003161125.1 1242462 D 471856 CDS YP_003161126.1 256832399 8380344 1242982..1243443 1 NC_013174.1 hypothetical protein 1243443 8380344 Jden_1167 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161126.1 1242982 D 471856 CDS YP_003161127.1 256832400 8380345 1243445..1244086 1 NC_013174.1 KEGG: eca:ECA0465 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 1244086 8380345 Jden_1168 Jonesia denitrificans DSM 20603 phosphoserine phosphatase SerB YP_003161127.1 1243445 D 471856 CDS YP_003161128.1 256832401 8380346 1244123..1244818 1 NC_013174.1 hypothetical protein 1244818 8380346 Jden_1169 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161128.1 1244123 D 471856 CDS YP_003161129.1 256832402 8380347 1244860..1245441 1 NC_013174.1 PFAM: protein of unknown function DUF461; KEGG: dsh:Dshi_3957 hypothetical protein; hypothetical protein 1245441 8380347 Jden_1170 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161129.1 1244860 D 471856 CDS YP_003161130.1 256832403 8380348 1245431..1246672 1 NC_013174.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bxe:Bxe_B1834 Tat-translocated enzyme, Dyp- type peroxidase; dyp-type peroxidase family protein 1246672 8380348 Jden_1171 Jonesia denitrificans DSM 20603 dyp-type peroxidase family protein YP_003161130.1 1245431 D 471856 CDS YP_003161131.1 256832404 8380349 complement(1246739..1247977) 1 NC_013174.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mxa:MXAN_1524 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 1247977 8380349 Jden_1172 Jonesia denitrificans DSM 20603 glucose-1-phosphate adenylyltransferase YP_003161131.1 1246739 R 471856 CDS YP_003161132.1 256832405 8380350 1248034..1249248 1 NC_013174.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1; glycogen synthase 1249248 8380350 Jden_1173 Jonesia denitrificans DSM 20603 glycogen synthase YP_003161132.1 1248034 D 471856 CDS YP_003161133.1 256832406 8380351 1249426..1249743 1 NC_013174.1 PFAM: small multidrug resistance protein; KEGG: ypm:YP_0511 suppresses groEL, may be chaperone; small multidrug resistance protein 1249743 8380351 Jden_1174 Jonesia denitrificans DSM 20603 small multidrug resistance protein YP_003161133.1 1249426 D 471856 CDS YP_003161134.1 256832407 8380352 1249740..1250162 1 NC_013174.1 PFAM: small multidrug resistance protein; KEGG: bvi:Bcep1808_2367 small multidrug resistance protein; small multidrug resistance protein 1250162 8380352 Jden_1175 Jonesia denitrificans DSM 20603 small multidrug resistance protein YP_003161134.1 1249740 D 471856 CDS YP_003161135.1 256832408 8380353 complement(1250152..1250958) 1 NC_013174.1 KEGG: bur:Bcep18194_C7576 6-phosphogluconate dehydrogenase, NAD-binding; hypothetical protein 1250958 8380353 Jden_1176 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161135.1 1250152 R 471856 CDS YP_003161136.1 256832409 8380354 1251016..1251828 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2270 ABC transporter ATP-binding protein; ABC transporter 1251828 8380354 Jden_1177 Jonesia denitrificans DSM 20603 ABC transporter YP_003161136.1 1251016 D 471856 CDS YP_003161137.1 256832410 8380355 1252021..1252449 1 NC_013174.1 PFAM: protein of unknown function DUF107; KEGG: rme:Rmet_1454 protein of unknown function DUF107; hypothetical protein 1252449 8380355 Jden_1178 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161137.1 1252021 D 471856 CDS YP_003161138.1 256832411 8380356 1252492..1253703 1 NC_013174.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein; hypothetical protein 1253703 8380356 Jden_1179 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161138.1 1252492 D 471856 CDS YP_003161139.1 256832412 8380357 1253813..1254661 1 NC_013174.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: azc:AZC_4469 SpoU rRNA methylase family protein; tRNA/rRNA methyltransferase SpoU 1254661 8380357 Jden_1180 Jonesia denitrificans DSM 20603 tRNA/rRNA methyltransferase SpoU YP_003161139.1 1253813 D 471856 CDS YP_003161140.1 256832413 8380358 1254874..1255647 1 NC_013174.1 PFAM: hydroxyethylthiazole kinase; KEGG: spe:Spro_3578 hydroxyethylthiazole kinase; Hydroxyethylthiazole kinase 1255647 8380358 Jden_1181 Jonesia denitrificans DSM 20603 Hydroxyethylthiazole kinase YP_003161140.1 1254874 D 471856 CDS YP_003161141.1 256832414 8380359 1255644..1256390 1 NC_013174.1 PFAM: thiamine monophosphate synthase; KEGG: rsp:RSP_0648 thiamine-phosphate pyrophosphorylase; thiamine-phosphate diphosphorylase 1256390 8380359 Jden_1182 Jonesia denitrificans DSM 20603 thiamine-phosphate diphosphorylase YP_003161141.1 1255644 D 471856 CDS YP_003161142.1 256832415 8380360 1256387..1257943 1 NC_013174.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; TENA/THI-4 domain protein; KEGG: mpo:Mpop_4984 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1257943 8380360 Jden_1183 Jonesia denitrificans DSM 20603 phosphomethylpyrimidine kinase YP_003161142.1 1256387 D 471856 CDS YP_003161143.1 256832416 8380361 complement(1257940..1258482) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2511 acetyltransferase; N-acetyltransferase GCN5 1258482 8380361 Jden_1184 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161143.1 1257940 R 471856 CDS YP_003161144.1 256832417 8380362 1258670..1259398 1 NC_013174.1 KEGG: btr:Btr_2129 hypothetical protein; hypothetical protein 1259398 8380362 Jden_1185 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161144.1 1258670 D 471856 CDS YP_003161145.1 256832418 8380363 1259391..1261040 1 NC_013174.1 KEGG: nwi:Nwi_2256 hypothetical protein; nucleotidyltransferase/DNA polymerase involved in DNA repair 1261040 8380363 Jden_1186 Jonesia denitrificans DSM 20603 nucleotidyltransferase/DNA polymerase involved in DNA repair YP_003161145.1 1259391 D 471856 CDS YP_003161146.1 256832419 8380364 1261033..1264314 1 NC_013174.1 KEGG: hha:Hhal_0463 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1264314 8380364 Jden_1187 Jonesia denitrificans DSM 20603 DNA polymerase III subunit alpha YP_003161146.1 1261033 D 471856 CDS YP_003161147.1 256832420 8380365 1264351..1265403 1 NC_013174.1 PFAM: dihydrodipicolinate synthetase; KEGG: mlo:mll6376 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1265403 8380365 Jden_1188 Jonesia denitrificans DSM 20603 dihydrodipicolinate synthetase YP_003161147.1 1264351 D 471856 CDS YP_003161148.1 256832421 8380366 1265469..1266308 1 NC_013174.1 PFAM: beta-lactamase; KEGG: gme:Gmet_0954 beta-lactamase; beta-lactamase 1266308 8380366 Jden_1189 Jonesia denitrificans DSM 20603 beta-lactamase YP_003161148.1 1265469 D 471856 CDS YP_003161149.1 256832422 8380367 complement(1266271..1267527) 1 NC_013174.1 PFAM: ROK family protein; KEGG: sil:SPO0860 xylose repressor, putative; ROK family protein 1267527 8380367 Jden_1190 Jonesia denitrificans DSM 20603 ROK family protein YP_003161149.1 1266271 R 471856 CDS YP_003161150.1 256832423 8381771 1268025..1270142 1 NC_013174.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xcb:XC_2826 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 1270142 8381771 Jden_1191 Jonesia denitrificans DSM 20603 peptidyl-dipeptidase Dcp YP_003161150.1 1268025 D 471856 CDS YP_003161151.1 256832424 8380369 1270234..1271553 1 NC_013174.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_4600 peptidase M20; peptidase M20 1271553 8380369 Jden_1192 Jonesia denitrificans DSM 20603 peptidase M20 YP_003161151.1 1270234 D 471856 CDS YP_003161152.1 256832425 8380370 1271629..1271925 1 NC_013174.1 KEGG: GF17318 gene product from transcript GF17318- RA; hypothetical protein 1271925 8380370 Jden_1193 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161152.1 1271629 D 471856 CDS YP_003161153.1 256832426 8380371 1272007..1272876 1 NC_013174.1 KEGG: atc:AGR_C_1833 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 1272876 8380371 Jden_1194 Jonesia denitrificans DSM 20603 undecaprenol kinase YP_003161153.1 1272007 D 471856 CDS YP_003161154.1 256832427 8380372 1272873..1274144 1 NC_013174.1 KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase; TIGRFAM: cysteine/1-D-myo-inosityl 2-amino-2-deoxy- alpha-D-glucopyranoside ligase; PFAM: Cysteinyl-tRNA synthetase class Ia; cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase 1274144 8380372 Jden_1195 Jonesia denitrificans DSM 20603 cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase YP_003161154.1 1272873 D 471856 CDS YP_003161155.1 256832428 8380373 complement(1274176..1275066) 1 NC_013174.1 PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein; hypothetical protein 1275066 8380373 Jden_1196 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161155.1 1274176 R 471856 CDS YP_003161156.1 256832429 8380374 1275127..1275804 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0436 2-deoxyglucose-6-phosphatase; HAD-superfamily hydrolase 1275804 8380374 Jden_1197 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003161156.1 1275127 D 471856 CDS YP_003161157.1 256832430 8380375 complement(1275748..1276644) 1 NC_013174.1 KEGG: hypothetical protein; recombinase B 1276644 8380375 Jden_1198 Jonesia denitrificans DSM 20603 recombinase B YP_003161157.1 1275748 R 471856 CDS YP_003161158.1 256832431 8380376 1276700..1277809 1 NC_013174.1 PFAM: peptidase M50; KEGG: sil:SPO1636 SREBP protease; peptidase M50 1277809 8380376 Jden_1199 Jonesia denitrificans DSM 20603 peptidase M50 YP_003161158.1 1276700 D 471856 CDS YP_003161159.1 256832432 8380377 1277833..1278858 1 NC_013174.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: sfu:Sfum_2514 SAM-dependent methyltransferase; tRNA methyltransferase complex GCD14 subunit 1278858 8380377 Jden_1200 Jonesia denitrificans DSM 20603 tRNA methyltransferase complex GCD14 subunit YP_003161159.1 1277833 D 471856 CDS YP_003161160.1 256832433 8380378 1278922..1280574 1 NC_013174.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gur:Gura_2842 AAA family ATPase, CDC48 subfamily protein; ATPase AAA 1280574 8380378 Jden_1201 Jonesia denitrificans DSM 20603 ATPase AAA YP_003161160.1 1278922 D 471856 CDS YP_003161161.1 256832434 8380379 1280614..1282245 1 NC_013174.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; hypothetical protein 1282245 8380379 Jden_1202 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161161.1 1280614 D 471856 CDS YP_003161162.1 256832435 8380380 1282334..1282531 1 NC_013174.1 PFAM: protein of unknown function DUF797; hypothetical protein 1282531 8380380 Jden_1203 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161162.1 1282334 D 471856 CDS YP_003161163.1 256832436 8380381 1282528..1283436 1 NC_013174.1 PFAM: 20S proteasome A and B subunits; KEGG: Hypothetical protein CBG13586; K02738 20S proteasome subunit beta 1; 20S proteasome A and B subunits 1283436 8380381 Jden_1204 Jonesia denitrificans DSM 20603 20S proteasome A and B subunits YP_003161163.1 1282528 D 471856 CDS YP_003161164.1 256832437 8380382 1283433..1284143 1 NC_013174.1 PFAM: 20S proteasome A and B subunits; 20S proteasome A and B subunits 1284143 8380382 Jden_1205 Jonesia denitrificans DSM 20603 20S proteasome A and B subunits YP_003161164.1 1283433 D 471856 CDS YP_003161165.1 256832438 8380383 1284140..1285519 1 NC_013174.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; hypothetical protein 1285519 8380383 Jden_1206 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161165.1 1284140 D 471856 CDS YP_003161166.1 256832439 8380384 1285573..1286481 1 NC_013174.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gbm:Gbem_1109 peptidylprolyl isomerase FKBP- type; FKBP-type peptidylprolyl isomerase 1286481 8380384 Jden_1207 Jonesia denitrificans DSM 20603 FKBP-type peptidylprolyl isomerase YP_003161166.1 1285573 D 471856 CDS YP_003161167.1 256832440 8380385 1286494..1287267 1 NC_013174.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: csa:Csal_0516 imidazole glycerol phosphate synthase subunit HisF; Imidazole glycerol phosphate synthase cyclase subunit 1287267 8380385 Jden_1208 Jonesia denitrificans DSM 20603 Imidazole glycerol phosphate synthase cyclase subunit YP_003161167.1 1286494 D 471856 CDS YP_003161168.1 256832441 8380386 1287339..1289093 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rde:RD1_1749 efflux ABC transporter, transmembrane ATP-binding protein , putative; ABC transporter 1289093 8380386 Jden_1209 Jonesia denitrificans DSM 20603 ABC transporter YP_003161168.1 1287339 D 471856 CDS YP_003161169.1 256832442 8380387 1289090..1290937 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ABC transporter related; ABC transporter 1290937 8380387 Jden_1210 Jonesia denitrificans DSM 20603 ABC transporter YP_003161169.1 1289090 D 471856 CDS YP_003161170.1 256832443 8380388 1290934..1291314 1 NC_013174.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: abo:ABO_2134 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 1291314 8380388 Jden_1211 Jonesia denitrificans DSM 20603 phosphoribosyl-AMP cyclohydrolase YP_003161170.1 1290934 D 471856 CDS YP_003161171.1 256832444 8380389 1291351..1292928 1 NC_013174.1 KEGG: gsu:GSU2383 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase component I 1292928 8380389 Jden_1212 Jonesia denitrificans DSM 20603 anthranilate synthase component I YP_003161171.1 1291351 D 471856 CDS YP_003161172.1 256832445 8380390 1292925..1293530 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1293530 8380390 Jden_1213 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161172.1 1292925 D 471856 CDS YP_003161173.1 256832446 8380391 1293604..1293885 1 NC_013174.1 hypothetical protein 1293885 8380391 Jden_1214 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161173.1 1293604 D 471856 CDS YP_003161174.1 256832447 8380392 1294060..1294875 1 NC_013174.1 PFAM: Indole-3-glycerol phosphate synthase; putative N-acetylmannosamine-6-phosphate epimerase; KEGG: afw:Anae109_0373 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 1294875 8380392 Jden_1215 Jonesia denitrificans DSM 20603 indole-3-glycerol-phosphate synthase YP_003161174.1 1294060 D 471856 CDS YP_003161175.1 256832448 8380393 1294918..1296162 1 NC_013174.1 KEGG: afr:AFE_2069 tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 1296162 8380393 Jden_1216 Jonesia denitrificans DSM 20603 tryptophan synthase subunit beta YP_003161175.1 1294918 D 471856 CDS YP_003161176.1 256832449 8380394 1296159..1296983 1 NC_013174.1 KEGG: gme:Gmet_2477 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1296983 8380394 Jden_1217 Jonesia denitrificans DSM 20603 tryptophan synthase subunit alpha YP_003161176.1 1296159 D 471856 CDS YP_003161177.1 256832450 8380395 1296980..1297837 1 NC_013174.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: bha:BH3589 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1297837 8380395 Jden_1218 Jonesia denitrificans DSM 20603 prolipoprotein diacylglyceryl transferase YP_003161177.1 1296980 D 471856 CDS YP_003161178.1 256832451 8380396 1298087..1302664 1 NC_013174.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: glo:Glov_3016 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 1302664 8380396 Jden_1219 Jonesia denitrificans DSM 20603 Glutamate synthase (ferredoxin) YP_003161178.1 1298087 D 471856 CDS YP_003161179.1 256832452 8380397 1302657..1304120 1 NC_013174.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sus:Acid_3815 glutamate synthase (NADH) small subunit; glutamate synthase NADH/NADPH small subunit 1304120 8380397 Jden_1220 Jonesia denitrificans DSM 20603 glutamate synthase NADH/NADPH small subunit YP_003161179.1 1302657 D 471856 CDS YP_003161180.1 256832453 8380398 1304219..1305637 1 NC_013174.1 KEGG: mxa:MXAN_6299 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 1305637 8380398 Jden_1221 Jonesia denitrificans DSM 20603 pyruvate kinase YP_003161180.1 1304219 D 471856 CDS YP_003161181.1 256832454 8380399 1305693..1306040 1 NC_013174.1 hypothetical protein 1306040 8380399 Jden_1222 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161181.1 1305693 D 471856 CDS YP_003161182.1 256832455 8381772 1306383..1307072 1 NC_013174.1 PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2822 response regulator; response regulator receiver and ANTAR domain-containing protein 1307072 8381772 Jden_1223 Jonesia denitrificans DSM 20603 response regulator receiver and ANTAR domain-containing protein YP_003161182.1 1306383 D 471856 CDS YP_003161183.1 256832456 8380401 1307272..1307940 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_0832 acetyltransferase; N-acetyltransferase GCN5 1307940 8380401 Jden_1224 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161183.1 1307272 D 471856 CDS YP_003161184.1 256832457 8380402 complement(1307946..1308404) 1 NC_013174.1 PFAM: thioesterase superfamily protein; KEGG: pin:Ping_1451 phenylacetic acid degradation- related protein; thioesterase superfamily protein 1308404 8380402 Jden_1225 Jonesia denitrificans DSM 20603 thioesterase superfamily protein YP_003161184.1 1307946 R 471856 CDS YP_003161185.1 256832458 8380403 1308406..1311087 1 NC_013174.1 KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I 1311087 8380403 Jden_1226 Jonesia denitrificans DSM 20603 DNA polymerase I YP_003161185.1 1308406 D 471856 CDS YP_003161186.1 256832459 8380404 complement(1311084..1311986) 1 NC_013174.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcn:Bcen_4023 methyltransferase type 11; type 11 methyltransferase 1311986 8380404 Jden_1227 Jonesia denitrificans DSM 20603 type 11 methyltransferase YP_003161186.1 1311084 R 471856 CDS YP_003161187.1 256832460 8380405 1312101..1313123 1 NC_013174.1 PFAM: phosphofructokinase; KEGG: mxa:MXAN_6373 6-phosphofructokinase I; 6-phosphofructokinase 1313123 8380405 Jden_1228 Jonesia denitrificans DSM 20603 6-phosphofructokinase YP_003161187.1 1312101 D 471856 CDS YP_003161188.1 256832461 8380406 1313435..1314901 1 NC_013174.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: dal:Dalk_0933 ribosomal protein S1; RNA binding S1 domain-containing protein 1314901 8380406 Jden_1229 Jonesia denitrificans DSM 20603 RNA binding S1 domain-containing protein YP_003161188.1 1313435 D 471856 CDS YP_003161189.1 256832462 8380407 1315035..1315661 1 NC_013174.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: ypm:YP_2507 pyrrolidone-carboxylate peptidase; Pyroglutamyl-peptidase I 1315661 8380407 Jden_1230 Jonesia denitrificans DSM 20603 Pyroglutamyl-peptidase I YP_003161189.1 1315035 D 471856 CDS YP_003161190.1 256832463 8380408 complement(1315730..1317625) 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rce:RC1_1837 ABC transporter, ATP-binding; ABC transporter 1317625 8380408 Jden_1231 Jonesia denitrificans DSM 20603 ABC transporter YP_003161190.1 1315730 R 471856 CDS YP_003161191.1 256832464 8380409 1317697..1318284 1 NC_013174.1 KEGG: ade:Adeh_2684 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 1318284 8380409 Jden_1232 Jonesia denitrificans DSM 20603 dephospho-CoA kinase YP_003161191.1 1317697 D 471856 CDS YP_003161192.1 256832465 8380410 1318647..1319984 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_2593 major facilitator transporter; major facilitator superfamily protein 1319984 8380410 Jden_1233 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161192.1 1318647 D 471856 CDS YP_003161193.1 256832466 8380411 complement(1320029..1320883) 1 NC_013174.1 KEGG: bcb:BCB4264_A4356 hypothetical protein; putative transcriptional regulator 1320883 8380411 Jden_1234 Jonesia denitrificans DSM 20603 putative transcriptional regulator YP_003161193.1 1320029 R 471856 CDS YP_003161194.1 256832467 8380412 1321072..1324797 1 NC_013174.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: bcz:BCZK1932 respiratory nitrate reductase, alpha subunit; nitrate reductase subunit alpha 1324797 8380412 Jden_1235 Jonesia denitrificans DSM 20603 nitrate reductase subunit alpha YP_003161194.1 1321072 D 471856 CDS YP_003161195.1 256832468 8380413 1324797..1326320 1 NC_013174.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: bcz:BCZK1933 respiratory nitrate reductase, beta subunit; nitrate reductase subunit beta 1326320 8380413 Jden_1236 Jonesia denitrificans DSM 20603 nitrate reductase subunit beta YP_003161195.1 1324797 D 471856 CDS YP_003161196.1 256832469 8380414 1326317..1327063 1 NC_013174.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: bsu:BSU37260 nitrate reductase (protein J); nitrate reductase molybdenum cofactor assembly chaperone 1327063 8380414 Jden_1237 Jonesia denitrificans DSM 20603 nitrate reductase molybdenum cofactor assembly chaperone YP_003161196.1 1326317 D 471856 CDS YP_003161197.1 256832470 8380415 1327067..1327783 1 NC_013174.1 KEGG: bce:BC2121 respiratory nitrate reductase gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 1327783 8380415 Jden_1238 Jonesia denitrificans DSM 20603 respiratory nitrate reductase subunit gamma YP_003161197.1 1327067 D 471856 CDS YP_003161198.1 256832471 8380416 complement(1327829..1329067) 1 NC_013174.1 PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pzu:PHZ_c0275 molybdopterin biosynthesis protein; molybdopterin binding domain-containing protein 1329067 8380416 Jden_1239 Jonesia denitrificans DSM 20603 molybdopterin binding domain-containing protein YP_003161198.1 1327829 R 471856 CDS YP_003161199.1 256832472 8380417 1329096..1330148 1 NC_013174.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdopterin binding domain; KEGG: abc:ACICU_02122 molybdenum cofactor biosynthesis protein; molybdenum cofactor biosynthesis protein C 1330148 8380417 Jden_1240 Jonesia denitrificans DSM 20603 molybdenum cofactor biosynthesis protein C YP_003161199.1 1329096 D 471856 CDS YP_003161200.1 256832473 8380418 1330141..1330563 1 NC_013174.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bca:BCE_3580 molybdopterin converting factor, subunit 2; molybdopterin biosynthesis MoaE protein 1330563 8380418 Jden_1241 Jonesia denitrificans DSM 20603 molybdopterin biosynthesis MoaE protein YP_003161200.1 1330141 D 471856 CDS YP_003161201.1 256832474 8380419 1330560..1331621 1 NC_013174.1 KEGG: sus:Acid_6425 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1331621 8380419 Jden_1242 Jonesia denitrificans DSM 20603 molybdenum cofactor biosynthesis protein A YP_003161201.1 1330560 D 471856 CDS YP_003161202.1 256832475 8380420 complement(1331627..1331881) 1 NC_013174.1 hypothetical protein 1331881 8380420 Jden_1243 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161202.1 1331627 R 471856 CDS YP_003161203.1 256832476 8380421 complement(1331884..1332153) 1 NC_013174.1 hypothetical protein 1332153 8380421 Jden_1244 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161203.1 1331884 R 471856 CDS YP_003161204.1 256832477 8380422 complement(1332137..1332781) 1 NC_013174.1 KEGG: bcz:BCZK4514 molybdopterin-guanine dinucleotide biosynthesis protein A; Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein 1332781 8380422 Jden_1245 Jonesia denitrificans DSM 20603 Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_003161204.1 1332137 R 471856 CDS YP_003161205.1 256832478 8380423 complement(1332778..1333893) 1 NC_013174.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_04098 molybdopterin/thiamine biosynthesis family protein; UBA/THIF-type NAD/FAD binding protein 1333893 8380423 Jden_1246 Jonesia denitrificans DSM 20603 UBA/THIF-type NAD/FAD binding protein YP_003161205.1 1332778 R 471856 CDS YP_003161206.1 256832479 8380424 1333979..1336087 1 NC_013174.1 KEGG: bcy:Bcer98_3710 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; excinuclease ABC subunit B 1336087 8380424 Jden_1247 Jonesia denitrificans DSM 20603 excinuclease ABC subunit B YP_003161206.1 1333979 D 471856 CDS YP_003161207.1 256832480 8380425 1336084..1337016 1 NC_013174.1 PFAM: PfkB domain protein; KEGG: mca:MCA0970 carbohydrate kinase; PfkB domain-containing protein 1337016 8380425 Jden_1248 Jonesia denitrificans DSM 20603 PfkB domain-containing protein YP_003161207.1 1336084 D 471856 CDS YP_003161208.1 256832481 8380426 1337220..1338212 1 NC_013174.1 PFAM: Integral membrane protein TerC; KEGG: csa:Csal_1104 integral membrane protein TerC; integral membrane protein TerC 1338212 8380426 Jden_1249 Jonesia denitrificans DSM 20603 integral membrane protein TerC YP_003161208.1 1337220 D 471856 CDS YP_003161209.1 256832482 8380427 complement(1338316..1338699) 1 NC_013174.1 PFAM: YCII-related; KEGG: mpt:Mpe_A2445 hypothetical protein; YCII-like protein 1338699 8380427 Jden_1250 Jonesia denitrificans DSM 20603 YCII-like protein YP_003161209.1 1338316 R 471856 CDS YP_003161210.1 256832483 8380428 1338754..1341669 1 NC_013174.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A; excinuclease ABC subunit A 1341669 8380428 Jden_1251 Jonesia denitrificans DSM 20603 excinuclease ABC subunit A YP_003161210.1 1338754 D 471856 CDS YP_003161211.1 256832484 8380429 1341702..1343645 1 NC_013174.1 KEGG: mpo:Mpop_3001 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 1343645 8380429 Jden_1252 Jonesia denitrificans DSM 20603 excinuclease ABC subunit C YP_003161211.1 1341702 D 471856 CDS YP_003161212.1 256832485 8380430 1343727..1344665 1 NC_013174.1 PFAM: conserved hypothetical protein; KEGG: bcz:BCZK4848 hypothetical protein; hypothetical protein 1344665 8380430 Jden_1253 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161212.1 1343727 D 471856 CDS YP_003161213.1 256832486 8380431 1344669..1345622 1 NC_013174.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: bha:BH3568 hypothetical protein; hypothetical protein 1345622 8380431 Jden_1254 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161213.1 1344669 D 471856 CDS YP_003161214.1 256832487 8380432 1345662..1346642 1 NC_013174.1 PFAM: protein of unknown function DUF199; KEGG: bha:BH3567 hypothetical protein; hypothetical protein 1346642 8380432 Jden_1255 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161214.1 1345662 D 471856 CDS YP_003161215.1 256832488 8380433 1346940..1347944 1 NC_013174.1 KEGG: sus:Acid_7375 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1347944 8380433 Jden_1256 Jonesia denitrificans DSM 20603 glyceraldehyde-3-phosphate dehydrogenase, type I YP_003161215.1 1346940 D 471856 CDS YP_003161216.1 256832489 8380434 1348075..1349274 1 NC_013174.1 PFAM: phosphoglycerate kinase; KEGG: PGK1; phosphoglycerate kinase; K00927 phosphoglycerate kinase; phosphoglycerate kinase 1349274 8380434 Jden_1257 Jonesia denitrificans DSM 20603 phosphoglycerate kinase YP_003161216.1 1348075 D 471856 CDS YP_003161217.1 256832490 8380435 1349299..1350081 1 NC_013174.1 KEGG: bsu:BSU33920 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1350081 8380435 Jden_1258 Jonesia denitrificans DSM 20603 triosephosphate isomerase YP_003161217.1 1349299 D 471856 CDS YP_003161218.1 256832491 8380436 1350228..1350473 1 NC_013174.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pin:Ping_0814 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1350473 8380436 Jden_1259 Jonesia denitrificans DSM 20603 preprotein translocase subunit SecG YP_003161218.1 1350228 D 471856 CDS YP_003161219.1 256832492 8380437 complement(1350604..1351353) 1 NC_013174.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: EMB2024 (EMBRYO DEFECTIVE 2024); catalytic; K01057 6-phosphogluconolactonase; 6-phosphogluconolactonase 1351353 8380437 Jden_1260 Jonesia denitrificans DSM 20603 6-phosphogluconolactonase YP_003161219.1 1350604 R 471856 CDS YP_003161220.1 256832493 8380438 complement(1351350..1352285) 1 NC_013174.1 KEGG: sus:Acid_5280 glucose-6-P dehydrogenase subunit-like protein; Glucose-6-P dehydrogenase subunit-like protein 1352285 8380438 Jden_1261 Jonesia denitrificans DSM 20603 Glucose-6-P dehydrogenase subunit-like protein YP_003161220.1 1351350 R 471856 CDS YP_003161221.1 256832494 8380439 complement(1352306..1353847) 1 NC_013174.1 KEGG: scl:sce4355 hypothetical protein; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1353847 8380439 Jden_1262 Jonesia denitrificans DSM 20603 glucose-6-phosphate 1-dehydrogenase YP_003161221.1 1352306 R 471856 CDS YP_003161222.1 256832495 8380440 1353943..1354167 1 NC_013174.1 hypothetical protein 1354167 8380440 Jden_1263 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161222.1 1353943 D 471856 CDS YP_003161223.1 256832496 8380441 complement(1354109..1356229) 1 NC_013174.1 TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: bha:BH2352 transketolase; transketolase 1356229 8380441 Jden_1264 Jonesia denitrificans DSM 20603 transketolase YP_003161223.1 1354109 R 471856 CDS YP_003161224.1 256832497 8380442 1356590..1357588 1 NC_013174.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: maq:Maqu_0070 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 1357588 8380442 Jden_1265 Jonesia denitrificans DSM 20603 protoheme IX farnesyltransferase YP_003161224.1 1356590 D 471856 CDS YP_003161225.1 256832498 8380443 1357615..1358547 1 NC_013174.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bcr:BCAH187_A4222 integrase/recombinase XerD; tyrosine recombinase XerD 1358547 8380443 Jden_1266 Jonesia denitrificans DSM 20603 tyrosine recombinase XerD YP_003161225.1 1357615 D 471856 CDS YP_003161226.1 256832499 8380444 1358690..1359571 1 NC_013174.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: csa:Csal_3293 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase 1359571 8380444 Jden_1267 Jonesia denitrificans DSM 20603 Cobyrinic acid ac-diamide synthase YP_003161226.1 1358690 D 471856 CDS YP_003161227.1 256832500 8380445 1359561..1360442 1 NC_013174.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: bcr:BCAH187_A4189 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1360442 8380445 Jden_1268 Jonesia denitrificans DSM 20603 chromosome segregation and condensation protein ScpA YP_003161227.1 1359561 D 471856 CDS YP_003161228.1 256832501 8380446 1360435..1361061 1 NC_013174.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: scl:sce2028 hypothetical protein; chromosome segregation and condensation protein ScpB 1361061 8380446 Jden_1269 Jonesia denitrificans DSM 20603 chromosome segregation and condensation protein ScpB YP_003161228.1 1360435 D 471856 CDS YP_003161229.1 256832502 8380447 1361076..1361873 1 NC_013174.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sfu:Sfum_0683 pseudouridine synthase; pseudouridine synthase 1361873 8380447 Jden_1270 Jonesia denitrificans DSM 20603 pseudouridine synthase YP_003161229.1 1361076 D 471856 CDS YP_003161230.1 256832503 8380448 1361904..1362614 1 NC_013174.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: mfa:Mfla_1072 cytidylate kinase; cytidylate kinase 1362614 8380448 Jden_1271 Jonesia denitrificans DSM 20603 cytidylate kinase YP_003161230.1 1361904 D 471856 CDS YP_003161231.1 256832504 8380449 1362690..1364162 1 NC_013174.1 KEGG: bcb:BCB4264_A1559 ribosome-associated GTPase EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: AAA ATPase; small GTP-binding protein 1364162 8380449 Jden_1272 Jonesia denitrificans DSM 20603 small GTP-binding protein YP_003161231.1 1362690 D 471856 CDS YP_003161232.1 256832505 8380450 1364178..1365560 1 NC_013174.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: UGP/PGM; UDP-Glucose- Pyrophosphorylase/Phosphoglucomutase; UTP--glucose-1-phosphate uridylyltransferase 1365560 8380450 Jden_1273 Jonesia denitrificans DSM 20603 UTP--glucose-1-phosphate uridylyltransferase YP_003161232.1 1364178 D 471856 CDS YP_003161233.1 256832506 8381773 1365868..1366506 1 NC_013174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rfr:Rfer_3385 XRE family transcriptional regulator; XRE family transcriptional regulator 1366506 8381773 Jden_1274 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003161233.1 1365868 D 471856 CDS YP_003161234.1 256832507 8380452 complement(1366503..1366691) 1 NC_013174.1 hypothetical protein 1366691 8380452 Jden_1275 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161234.1 1366503 R 471856 CDS YP_003161235.1 256832508 8380453 complement(1366786..1367460) 1 NC_013174.1 PFAM: NADPH-dependent FMN reductase; KEGG: aav:Aave_2781 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1367460 8380453 Jden_1276 Jonesia denitrificans DSM 20603 NADPH-dependent FMN reductase YP_003161235.1 1366786 R 471856 CDS YP_003161236.1 256832509 8380454 complement(1367463..1368593) 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: pfo:Pfl01_0703 luciferase-like; luciferase-like monooxygenase 1368593 8380454 Jden_1277 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003161236.1 1367463 R 471856 CDS YP_003161237.1 256832510 8380455 1368692..1369030 1 NC_013174.1 hypothetical protein 1369030 8380455 Jden_1278 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161237.1 1368692 D 471856 CDS YP_003161238.1 256832511 8380456 1369043..1370050 1 NC_013174.1 PFAM: integrase family protein; KEGG: cbc:CbuK_A0004 DNA integration/recombination/inversion protein; integrase family protein 1370050 8380456 Jden_1279 Jonesia denitrificans DSM 20603 integrase family protein YP_003161238.1 1369043 D 471856 CDS YP_003161239.1 256832512 8380457 complement(1370334..1370978) 1 NC_013174.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bat:BAS5046 hypothetical protein; hypothetical protein 1370978 8380457 Jden_1280 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161239.1 1370334 R 471856 CDS YP_003161240.1 256832513 8380458 complement(1370971..1371576) 1 NC_013174.1 hypothetical protein 1371576 8380458 Jden_1281 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161240.1 1370971 R 471856 CDS YP_003161241.1 256832514 8380459 complement(1371573..1372865) 1 NC_013174.1 PFAM: protein of unknown function DUF58; KEGG: dsh:Dshi_2905 hypothetical protein; hypothetical protein 1372865 8380459 Jden_1282 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161241.1 1371573 R 471856 CDS YP_003161242.1 256832515 8380460 complement(1372862..1373836) 1 NC_013174.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein; ATPase 1373836 8380460 Jden_1283 Jonesia denitrificans DSM 20603 ATPase YP_003161242.1 1372862 R 471856 CDS YP_003161243.1 256832516 8380461 complement(1373833..1374321) 1 NC_013174.1 KEGG: hypothetical protein LOC690927; hypothetical protein 1374321 8380461 Jden_1284 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161243.1 1373833 R 471856 CDS YP_003161244.1 256832517 8380462 complement(1374318..1375010) 1 NC_013174.1 hypothetical protein 1375010 8380462 Jden_1285 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161244.1 1374318 R 471856 CDS YP_003161245.1 256832518 8380463 complement(1375040..1376164) 1 NC_013174.1 KEGG: bha:BH1523 hypothetical protein; hypothetical protein 1376164 8380463 Jden_1286 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161245.1 1375040 R 471856 CDS YP_003161246.1 256832519 8380464 1376222..1377226 1 NC_013174.1 KEGG: acp:A2cp1_0607 putative DeoR-family transcriptional regulator; putative transcriptional regulator protein 1377226 8380464 Jden_1287 Jonesia denitrificans DSM 20603 putative transcriptional regulator protein YP_003161246.1 1376222 D 471856 CDS YP_003161247.1 256832520 8380465 1377219..1378202 1 NC_013174.1 KEGG: mxa:MXAN_1360 hypothetical protein; hypothetical protein 1378202 8380465 Jden_1288 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161247.1 1377219 D 471856 CDS YP_003161248.1 256832521 8380466 1378218..1378595 1 NC_013174.1 hypothetical protein 1378595 8380466 Jden_1289 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161248.1 1378218 D 471856 CDS YP_003161249.1 256832522 8380467 1378714..1378998 1 NC_013174.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cjd:JJD26997_0553 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit 1378998 8380467 Jden_1290 Jonesia denitrificans DSM 20603 twin-arginine translocation protein, TatA/E family subunit YP_003161249.1 1378714 D 471856 CDS YP_003161250.1 256832523 8380468 1379097..1379855 1 NC_013174.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: xca:xccb100_4295 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 1379855 8380468 Jden_1291 Jonesia denitrificans DSM 20603 Sec-independent protein translocase subunit TatC YP_003161250.1 1379097 D 471856 CDS YP_003161251.1 256832524 8380469 1379902..1382754 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: RNA helicase involved in mRNA catabolism; DEAD/DEAH box helicase 1382754 8380469 Jden_1292 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003161251.1 1379902 D 471856 CDS YP_003161252.1 256832525 8380470 1382767..1384392 1 NC_013174.1 PFAM: Amidohydrolase 3; KEGG: acp:A2cp1_2120 amidohydrolase 3; amidohydrolase 1384392 8380470 Jden_1293 Jonesia denitrificans DSM 20603 amidohydrolase YP_003161252.1 1382767 D 471856 CDS YP_003161253.1 256832526 8380471 1384769..1386325 1 NC_013174.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3783 apolipoprotein N- acyltransferase; apolipoprotein N-acyltransferase 1386325 8380471 Jden_1294 Jonesia denitrificans DSM 20603 apolipoprotein N-acyltransferase YP_003161253.1 1384769 D 471856 CDS YP_003161254.1 256832527 8380472 1386327..1387136 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_2710 glycosyl transferase family 2; family 2 glycosyl transferase 1387136 8380472 Jden_1295 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003161254.1 1386327 D 471856 CDS YP_003161255.1 256832528 8380473 complement(1387172..1387531) 1 NC_013174.1 hypothetical protein 1387531 8380473 Jden_1296 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161255.1 1387172 R 471856 CDS YP_003161256.1 256832529 8380474 1387952..1389313 1 NC_013174.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: rfr:Rfer_0078 phospholipase D/transphosphatidylase; phospholipase D/Transphosphatidylase 1389313 8380474 Jden_1297 Jonesia denitrificans DSM 20603 phospholipase D/Transphosphatidylase YP_003161256.1 1387952 D 471856 CDS YP_003161257.1 256832530 8380475 complement(1389389..1392787) 1 NC_013174.1 TIGRFAM: pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; pyruvate carboxyltransferase; Conserved carboxylase region; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: PCX; pyruvate carboxylase; K01959 pyruvate carboxylase subunit A; pyruvate carboxylase 1392787 8380475 Jden_1298 Jonesia denitrificans DSM 20603 pyruvate carboxylase YP_003161257.1 1389389 R 471856 CDS YP_003161258.1 256832531 8380476 1393060..1393971 1 NC_013174.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: net:Neut_2435 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1393971 8380476 Jden_1299 Jonesia denitrificans DSM 20603 Cobyrinic acid ac-diamide synthase YP_003161258.1 1393060 D 471856 CDS YP_003161259.1 256832532 8380477 complement(1394029..1394616) 1 NC_013174.1 SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator; transcriptional regulator, MerR family 1394616 8380477 Jden_1300 Jonesia denitrificans DSM 20603 transcriptional regulator, MerR family YP_003161259.1 1394029 R 471856 CDS YP_003161260.1 256832533 8380478 complement(1394772..1395563) 1 NC_013174.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: psa:PST_1620 transcriptional regulator, MerR family; transcriptional regulator, MerR family 1395563 8380478 Jden_1301 Jonesia denitrificans DSM 20603 transcriptional regulator, MerR family YP_003161260.1 1394772 R 471856 CDS YP_003161261.1 256832534 8380479 complement(1395569..1396054) 1 NC_013174.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_1361 FHA domain protein; FHA domain-containing protein 1396054 8380479 Jden_1302 Jonesia denitrificans DSM 20603 FHA domain-containing protein YP_003161261.1 1395569 R 471856 CDS YP_003161262.1 256832535 8380480 complement(1396224..1397225) 1 NC_013174.1 PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein 1397225 8380480 Jden_1303 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161262.1 1396224 R 471856 CDS YP_003161263.1 256832536 8380481 complement(1397233..1397565) 1 NC_013174.1 PFAM: protein of unknown function DUF1290; KEGG: bsu:BSU15270 small basic protein; hypothetical protein 1397565 8380481 Jden_1304 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161263.1 1397233 R 471856 CDS YP_003161264.1 256832537 8380482 complement(1397606..1398466) 1 NC_013174.1 PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein; hypothetical protein 1398466 8380482 Jden_1305 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161264.1 1397606 R 471856 CDS YP_003161265.1 256832538 8380483 complement(1398463..1399047) 1 NC_013174.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_0822 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1399047 8380483 Jden_1306 Jonesia denitrificans DSM 20603 CDP-alcohol phosphatidyltransferase YP_003161265.1 1398463 R 471856 CDS YP_003161266.1 256832539 8380484 1399347..1401320 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: xac:XAC2813 ATP-dependent RNA helicase; DEAD/DEAH box helicase 1401320 8380484 Jden_1307 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003161266.1 1399347 D 471856 CDS YP_003161267.1 256832540 8380485 complement(1401359..1401787) 1 NC_013174.1 hypothetical protein 1401787 8380485 Jden_1308 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161267.1 1401359 R 471856 CDS YP_003161268.1 256832541 8380486 complement(1401836..1402684) 1 NC_013174.1 KEGG: hypothetical protein; K00765 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 1402684 8380486 Jden_1309 Jonesia denitrificans DSM 20603 ATP phosphoribosyltransferase YP_003161268.1 1401836 R 471856 CDS YP_003161269.1 256832542 8380487 complement(1402706..1402969) 1 NC_013174.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: wsu:WS0090 putative phosphohydrolase; phosphoribosyl-ATP diphosphatase 1402969 8380487 Jden_1310 Jonesia denitrificans DSM 20603 phosphoribosyl-ATP diphosphatase YP_003161269.1 1402706 R 471856 CDS YP_003161270.1 256832543 8380488 complement(1402975..1403697) 1 NC_013174.1 KEGG: gme:Gmet_0067 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 1403697 8380488 Jden_1311 Jonesia denitrificans DSM 20603 ribulose-phosphate 3-epimerase YP_003161270.1 1402975 R 471856 CDS YP_003161271.1 256832544 8380489 complement(1403707..1405260) 1 NC_013174.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ank:AnaeK_4081 NusB/RsmB/TIM44; Fmu (Sun) domain-containing protein 1405260 8380489 Jden_1312 Jonesia denitrificans DSM 20603 Fmu (Sun) domain-containing protein YP_003161271.1 1403707 R 471856 CDS YP_003161272.1 256832545 8380490 complement(1405282..1406217) 1 NC_013174.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: azc:AZC_0797 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1406217 8380490 Jden_1313 Jonesia denitrificans DSM 20603 methionyl-tRNA formyltransferase YP_003161272.1 1405282 R 471856 CDS YP_003161273.1 256832546 8380491 complement(1406288..1408447) 1 NC_013174.1 KEGG: azo:azo3978 primosomal protein N' (replication factor Y); Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein 1408447 8380491 Jden_1314 Jonesia denitrificans DSM 20603 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein YP_003161273.1 1406288 R 471856 CDS YP_003161274.1 256832547 8380492 complement(1408519..1409715) 1 NC_013174.1 KEGG: bha:BH3300 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 1409715 8380492 Jden_1315 Jonesia denitrificans DSM 20603 S-adenosylmethionine synthetase YP_003161274.1 1408519 R 471856 CDS YP_003161275.1 256832548 8380493 complement(1409779..1411032) 1 NC_013174.1 KEGG: nar:Saro_0591 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 1411032 8380493 Jden_1316 Jonesia denitrificans DSM 20603 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_003161275.1 1409779 R 471856 CDS YP_003161276.1 256832549 8380494 complement(1411135..1411407) 1 NC_013174.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: hch:HCH_06314 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 1411407 8380494 Jden_1317 Jonesia denitrificans DSM 20603 DNA-directed RNA polymerase subunit omega YP_003161276.1 1411135 R 471856 CDS YP_003161277.1 256832550 8380495 complement(1411519..1412070) 1 NC_013174.1 KEGG: gdi:GDI1132 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 1412070 8380495 Jden_1318 Jonesia denitrificans DSM 20603 guanylate kinase YP_003161277.1 1411519 R 471856 CDS YP_003161278.1 256832551 8380496 complement(1412127..1412456) 1 NC_013174.1 hypothetical protein 1412456 8380496 Jden_1319 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161278.1 1412127 R 471856 CDS YP_003161279.1 256832552 8380497 complement(1412618..1413508) 1 NC_013174.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: bqu:BQ10840 orotidine 5-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1413508 8380497 Jden_1320 Jonesia denitrificans DSM 20603 orotidine 5'-phosphate decarboxylase YP_003161279.1 1412618 R 471856 CDS YP_003161280.1 256832553 8380498 complement(1413505..1416834) 1 NC_013174.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: pla:Plav_2313 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit 1416834 8380498 Jden_1321 Jonesia denitrificans DSM 20603 carbamoyl-phosphate synthase large subunit YP_003161280.1 1413505 R 471856 CDS YP_003161281.1 256832554 8380499 complement(1416842..1418086) 1 NC_013174.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dol:Dole_0120 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 1418086 8380499 Jden_1322 Jonesia denitrificans DSM 20603 carbamoyl-phosphate synthase small subunit YP_003161281.1 1416842 R 471856 CDS YP_003161282.1 256832555 8380500 complement(1418083..1418607) 1 NC_013174.1 hypothetical protein 1418607 8380500 Jden_1323 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161282.1 1418083 R 471856 CDS YP_003161283.1 256832556 8380501 complement(1418604..1419968) 1 NC_013174.1 KEGG: scl:sce4269 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 1419968 8380501 Jden_1324 Jonesia denitrificans DSM 20603 dihydroorotase, multifunctional complex type YP_003161283.1 1418604 R 471856 CDS YP_003161284.1 256832557 8380502 complement(1419976..1420977) 1 NC_013174.1 KEGG: scl:sce3822 hypothetical protein; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 1420977 8380502 Jden_1325 Jonesia denitrificans DSM 20603 aspartate carbamoyltransferase YP_003161284.1 1419976 R 471856 CDS YP_003161285.1 256832558 8380503 complement(1420974..1421561) 1 NC_013174.1 PFAM: phosphoribosyltransferase; KEGG: bha:BH2541 pyrimidine regulatory protein PyrR; uracil phosphoribosyltransferase 1421561 8380503 Jden_1326 Jonesia denitrificans DSM 20603 uracil phosphoribosyltransferase YP_003161285.1 1420974 R 471856 CDS YP_003161286.1 256832559 8380504 complement(1421702..1423417) 1 NC_013174.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bcr:BCAH187_A4654 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1423417 8380504 Jden_1327 Jonesia denitrificans DSM 20603 AMP-dependent synthetase and ligase YP_003161286.1 1421702 R 471856 CDS YP_003161287.1 256832560 8380505 complement(1423549..1423965) 1 NC_013174.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: gsu:GSU1692 N utilization substance protein B; NusB antitermination factor 1423965 8380505 Jden_1328 Jonesia denitrificans DSM 20603 NusB antitermination factor YP_003161287.1 1423549 R 471856 CDS YP_003161288.1 256832561 8380506 complement(1423967..1424530) 1 NC_013174.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor KOW domain protein; Elongation factor P; Elongation factor P/YeiP protein; KEGG: bcy:Bcer98_2891 elongation factor P; translation elongation factor P 1424530 8380506 Jden_1329 Jonesia denitrificans DSM 20603 translation elongation factor P YP_003161288.1 1423967 R 471856 CDS YP_003161289.1 256832562 8380507 1424697..1425563 1 NC_013174.1 hypothetical protein 1425563 8380507 Jden_1330 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161289.1 1424697 D 471856 CDS YP_003161290.1 256832563 8380508 complement(1425577..1425972) 1 NC_013174.1 KEGG: cak:Caul_4167 hypothetical protein; hypothetical protein 1425972 8380508 Jden_1331 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161290.1 1425577 R 471856 CDS YP_003161291.1 256832564 8380509 complement(1425976..1426641) 1 NC_013174.1 KEGG: bbr:BB0638 putative amidase; hypothetical protein 1426641 8380509 Jden_1332 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161291.1 1425976 R 471856 CDS YP_003161292.1 256832565 8380510 complement(1426752..1427177) 1 NC_013174.1 PFAM: dehydroquinase class II; KEGG: mno:Mnod_0123 3-dehydroquinate dehydratase, type II; 3-dehydroquinate dehydratase 1427177 8380510 Jden_1333 Jonesia denitrificans DSM 20603 3-dehydroquinate dehydratase YP_003161292.1 1426752 R 471856 CDS YP_003161293.1 256832566 8380511 complement(1427188..1428330) 1 NC_013174.1 KEGG: aav:Aave_1003 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 1428330 8380511 Jden_1334 Jonesia denitrificans DSM 20603 3-dehydroquinate synthase YP_003161293.1 1427188 R 471856 CDS YP_003161294.1 256832567 8380512 complement(1428327..1428872) 1 NC_013174.1 PFAM: shikimate kinase; KEGG: mmw:Mmwyl1_4117 shikimate kinase; shikimate kinase 1428872 8380512 Jden_1335 Jonesia denitrificans DSM 20603 shikimate kinase YP_003161294.1 1428327 R 471856 CDS YP_003161295.1 256832568 8380513 complement(1428872..1430086) 1 NC_013174.1 KEGG: sus:Acid_2745 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 1430086 8380513 Jden_1336 Jonesia denitrificans DSM 20603 chorismate synthase YP_003161295.1 1428872 R 471856 CDS YP_003161296.1 256832569 8380514 complement(1430218..1431036) 1 NC_013174.1 KEGG: similar to mucin 17; hypothetical protein 1431036 8380514 Jden_1337 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161296.1 1430218 R 471856 CDS YP_003161297.1 256832570 8380515 complement(1431020..1431748) 1 NC_013174.1 hypothetical protein 1431748 8380515 Jden_1338 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161297.1 1431020 R 471856 CDS YP_003161298.1 256832571 8380516 complement(1431745..1432806) 1 NC_013174.1 TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA; KEGG: ank:AnaeK_0675 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1432806 8380516 Jden_1339 Jonesia denitrificans DSM 20603 type IV pilus assembly protein PilM YP_003161298.1 1431745 R 471856 CDS YP_003161299.1 256832572 8380517 complement(1432898..1433722) 1 NC_013174.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ppd:Ppro_0982 prepilin peptidase; peptidase A24A domain-containing protein 1433722 8380517 Jden_1340 Jonesia denitrificans DSM 20603 peptidase A24A domain-containing protein YP_003161299.1 1432898 R 471856 CDS YP_003161300.1 256832573 8380518 complement(1433728..1435353) 1 NC_013174.1 hypothetical protein 1435353 8380518 Jden_1341 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161300.1 1433728 R 471856 CDS YP_003161301.1 256832574 8380519 complement(1435350..1435982) 1 NC_013174.1 hypothetical protein 1435982 8380519 Jden_1342 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161301.1 1435350 R 471856 CDS YP_003161302.1 256832575 8380520 complement(1435979..1437979) 1 NC_013174.1 KEGG: hch:HCH_03195 RTX toxins and related Ca2+- binding protein; hypothetical protein 1437979 8380520 Jden_1343 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161302.1 1435979 R 471856 CDS YP_003161303.1 256832576 8380521 complement(1438184..1438579) 1 NC_013174.1 KEGG: ppd:Ppro_1656 pilin domain-containing protein; hypothetical protein 1438579 8380521 Jden_1344 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161303.1 1438184 R 471856 CDS YP_003161304.1 256832577 8380522 complement(1438741..1439973) 1 NC_013174.1 PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC; type II secretion system protein 1439973 8380522 Jden_1345 Jonesia denitrificans DSM 20603 type II secretion system protein YP_003161304.1 1438741 R 471856 CDS YP_003161305.1 256832578 8380523 complement(1439973..1441673) 1 NC_013174.1 KEGG: mxa:MXAN_5787 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1441673 8380523 Jden_1346 Jonesia denitrificans DSM 20603 twitching motility protein YP_003161305.1 1439973 R 471856 CDS YP_003161306.1 256832579 8380524 complement(1441762..1443432) 1 NC_013174.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB; type II secretion system protein E 1443432 8380524 Jden_1347 Jonesia denitrificans DSM 20603 type II secretion system protein E YP_003161306.1 1441762 R 471856 CDS YP_003161307.1 256832580 8380525 complement(1443540..1444370) 1 NC_013174.1 PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: sat:SYN_01937 shikimate 5-dehydrogenase; shikimate dehydrogenase 1444370 8380525 Jden_1348 Jonesia denitrificans DSM 20603 shikimate dehydrogenase YP_003161307.1 1443540 R 471856 CDS YP_003161308.1 256832581 8380526 complement(1444367..1445560) 1 NC_013174.1 PFAM: aminodeoxychorismate lyase; KEGG: hip:CGSHiEE_00705 pyrimidine regulatory protein PyrR; aminodeoxychorismate lyase 1445560 8380526 Jden_1349 Jonesia denitrificans DSM 20603 aminodeoxychorismate lyase YP_003161308.1 1444367 R 471856 CDS YP_003161309.1 256832582 8380527 complement(1445728..1446231) 1 NC_013174.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: azc:AZC_2840 Holliday junction resolvase; Holliday junction resolvase YqgF 1446231 8380527 Jden_1350 Jonesia denitrificans DSM 20603 Holliday junction resolvase YqgF YP_003161309.1 1445728 R 471856 CDS YP_003161310.1 256832583 8380528 complement(1446235..1448922) 1 NC_013174.1 KEGG: afr:AFE_0934 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1448922 8380528 Jden_1351 Jonesia denitrificans DSM 20603 alanyl-tRNA synthetase YP_003161310.1 1446235 R 471856 CDS YP_003161311.1 256832584 8380529 complement(1449071..1449427) 1 NC_013174.1 hypothetical protein 1449427 8380529 Jden_1352 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161311.1 1449071 R 471856 CDS YP_003161312.1 256832585 8380530 complement(1449424..1449804) 1 NC_013174.1 hypothetical protein 1449804 8380530 Jden_1353 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161312.1 1449424 R 471856 CDS YP_003161313.1 256832586 8380531 complement(1449956..1450582) 1 NC_013174.1 KEGG: bcy:Bcer98_3327 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 1450582 8380531 Jden_1354 Jonesia denitrificans DSM 20603 30S ribosomal protein S4 YP_003161313.1 1449956 R 471856 CDS YP_003161314.1 256832587 8380532 1450869..1451543 1 NC_013174.1 KEGG: hch:HCH_06560 ribokinase family sugar kinase; ribokinase family sugar kinase 1451543 8380532 Jden_1355 Jonesia denitrificans DSM 20603 ribokinase family sugar kinase YP_003161314.1 1450869 D 471856 CDS YP_003161315.1 256832588 8380533 complement(1451540..1452934) 1 NC_013174.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_2242 recombination factor protein RarA; ATPase AAA 1452934 8380533 Jden_1356 Jonesia denitrificans DSM 20603 ATPase AAA YP_003161315.1 1451540 R 471856 CDS YP_003161316.1 256832589 8380534 complement(1452939..1453676) 1 NC_013174.1 KEGG: aeh:Mlg_0745 NUDIX hydrolase; NUDIX hydrolase 1453676 8380534 Jden_1357 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003161316.1 1452939 R 471856 CDS YP_003161317.1 256832590 8380535 complement(1453793..1454026) 1 NC_013174.1 hypothetical protein 1454026 8380535 Jden_1358 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161317.1 1453793 R 471856 CDS YP_003161318.1 256832591 8380536 complement(1453986..1455764) 1 NC_013174.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tbd:Tbd_0442 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1455764 8380536 Jden_1359 Jonesia denitrificans DSM 20603 aspartyl-tRNA synthetase YP_003161318.1 1453986 R 471856 CDS YP_003161319.1 256832592 8380537 complement(1455838..1457217) 1 NC_013174.1 KEGG: xac:XAC1826 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 1457217 8380537 Jden_1360 Jonesia denitrificans DSM 20603 histidyl-tRNA synthetase YP_003161319.1 1455838 R 471856 CDS YP_003161320.1 256832593 8380538 1457531..1458982 1 NC_013174.1 PFAM: protein of unknown function DUF349; KEGG: hypothetical protein; hypothetical protein 1458982 8380538 Jden_1361 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161320.1 1457531 D 471856 CDS YP_003161321.1 256832594 8380539 1459099..1459743 1 NC_013174.1 hypothetical protein 1459743 8380539 Jden_1362 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161321.1 1459099 D 471856 CDS YP_003161322.1 256832595 8380540 complement(1459730..1462144) 1 NC_013174.1 KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 1462144 8380540 Jden_1363 Jonesia denitrificans DSM 20603 (p)ppGpp synthetase I SpoT/RelA YP_003161322.1 1459730 R 471856 CDS YP_003161323.1 256832596 8380541 complement(1462227..1462763) 1 NC_013174.1 KEGG: mca:MCA0816 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 1462763 8380541 Jden_1364 Jonesia denitrificans DSM 20603 adenine phosphoribosyltransferase YP_003161323.1 1462227 R 471856 CDS YP_003161324.1 256832597 8380542 complement(1462763..1463863) 1 NC_013174.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: pub:SAR11_0981 preprotein translocase chain SecF; protein-export membrane protein SecF 1463863 8380542 Jden_1365 Jonesia denitrificans DSM 20603 protein-export membrane protein SecF YP_003161324.1 1462763 R 471856 CDS YP_003161325.1 256832598 8380543 complement(1463867..1465729) 1 NC_013174.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: bra:BRADO4035 preprotein translocase subunit SecD; protein-export membrane protein SecD 1465729 8380543 Jden_1366 Jonesia denitrificans DSM 20603 protein-export membrane protein SecD YP_003161325.1 1463867 R 471856 CDS YP_003161326.1 256832599 8380544 complement(1465783..1466172) 1 NC_013174.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: xfa:XF0224 preprotein translocase subunit YajC; preprotein translocase subunit YajC 1466172 8380544 Jden_1367 Jonesia denitrificans DSM 20603 preprotein translocase subunit YajC YP_003161326.1 1465783 R 471856 CDS YP_003161327.1 256832600 8380545 complement(1466263..1467321) 1 NC_013174.1 KEGG: glo:Glov_2173 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 1467321 8380545 Jden_1368 Jonesia denitrificans DSM 20603 Holliday junction DNA helicase RuvB YP_003161327.1 1466263 R 471856 CDS YP_003161328.1 256832601 8380546 complement(1467314..1467931) 1 NC_013174.1 KEGG: abb:ABBFA_000893 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 1467931 8380546 Jden_1369 Jonesia denitrificans DSM 20603 Holliday junction DNA helicase RuvA YP_003161328.1 1467314 R 471856 CDS YP_003161329.1 256832602 8380547 complement(1468022..1468594) 1 NC_013174.1 KEGG: aba:Acid345_3618 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 1468594 8380547 Jden_1370 Jonesia denitrificans DSM 20603 crossover junction endodeoxyribonuclease RuvC YP_003161329.1 1468022 R 471856 CDS YP_003161330.1 256832603 8380548 complement(1468600..1469358) 1 NC_013174.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein; hypothetical protein 1469358 8380548 Jden_1371 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161330.1 1468600 R 471856 CDS YP_003161331.1 256832604 8380549 complement(1469442..1469960) 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: sea:SeAg_B4799 NUDIX hydrolase; NUDIX hydrolase 1469960 8380549 Jden_1372 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003161331.1 1469442 R 471856 CDS YP_003161332.1 256832605 8380550 complement(1469957..1470622) 1 NC_013174.1 hypothetical protein 1470622 8380550 Jden_1373 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161332.1 1469957 R 471856 CDS YP_003161333.1 256832606 8380551 complement(1470619..1471821) 1 NC_013174.1 PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase; group 1 glycosyl transferase 1471821 8380551 Jden_1374 Jonesia denitrificans DSM 20603 group 1 glycosyl transferase YP_003161333.1 1470619 R 471856 CDS YP_003161334.1 256832607 8380552 complement(1471814..1472770) 1 NC_013174.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pla:Plav_0623 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 1472770 8380552 Jden_1375 Jonesia denitrificans DSM 20603 lipid A biosynthesis acyltransferase YP_003161334.1 1471814 R 471856 CDS YP_003161335.1 256832608 8380553 complement(1472767..1473390) 1 NC_013174.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: afw:Anae109_2785 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1473390 8380553 Jden_1376 Jonesia denitrificans DSM 20603 CDP-alcohol phosphatidyltransferase YP_003161335.1 1472767 R 471856 CDS YP_003161336.1 256832609 8380554 complement(1473412..1473966) 1 NC_013174.1 PFAM: histidine triad (HIT) protein; KEGG: dvm:DvMF_0357 histidine triad (HIT) protein; histidine triad (HIT) protein 1473966 8380554 Jden_1377 Jonesia denitrificans DSM 20603 histidine triad (HIT) protein YP_003161336.1 1473412 R 471856 CDS YP_003161337.1 256832610 8380555 complement(1474023..1476044) 1 NC_013174.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: mgm:Mmc1_0363 threonyl-tRNA synthetase; threonyl-tRNA synthetase 1476044 8380555 Jden_1378 Jonesia denitrificans DSM 20603 threonyl-tRNA synthetase YP_003161337.1 1474023 R 471856 CDS YP_003161338.1 256832611 8380556 complement(1476120..1476314) 1 NC_013174.1 hypothetical protein 1476314 8380556 Jden_1379 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161338.1 1476120 R 471856 CDS YP_003161339.1 256832612 8381774 complement(1476568..1477911) 1 NC_013174.1 KEGG: smd:Smed_4097 hypothetical protein; hypothetical protein 1477911 8381774 Jden_1380 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161339.1 1476568 R 471856 CDS YP_003161340.1 256832613 8380558 1478197..1480152 1 NC_013174.1 KEGG: cja:CJA_2611 endo-chitinase, putative, chi18D; PFAM: glycoside hydrolase family 18; chitin-binding domain 3 protein; Carbohydrate-binding family V/XII; SMART: chitinase II; Carbohydrate-binding family V/XII; chitinase 1480152 8380558 Jden_1381 Jonesia denitrificans DSM 20603 chitinase YP_003161340.1 1478197 D 471856 CDS YP_003161341.1 256832614 8381777 1480716..1481837 1 NC_013174.1 PFAM: Chorismate binding-like; KEGG: met:M446_0053 para-aminobenzoate synthase, subunit I; chorismate-binding protein 1481837 8381777 Jden_1382 Jonesia denitrificans DSM 20603 chorismate-binding protein YP_003161341.1 1480716 D 471856 CDS YP_003161342.1 256832615 8380560 1481834..1482664 1 NC_013174.1 PFAM: aminotransferase class IV; KEGG: pla:Plav_1562 aminotransferase class IV; class IV aminotransferase 1482664 8380560 Jden_1383 Jonesia denitrificans DSM 20603 class IV aminotransferase YP_003161342.1 1481834 D 471856 CDS YP_003161343.1 256832616 8381781 complement(1484249..1484950) 1 NC_013174.1 hypothetical protein 1484950 8381781 Jden_1387 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161343.1 1484249 R 471856 CDS YP_003161344.1 256832617 8380562 complement(1485209..1486267) 1 NC_013174.1 PFAM: AFG1-family ATPase; KEGG: aci:ACIAD2336 putative ATPase; AFG1 family ATPase 1486267 8380562 Jden_1388 Jonesia denitrificans DSM 20603 AFG1 family ATPase YP_003161344.1 1485209 R 471856 CDS YP_003161345.1 256832618 8380563 1486358..1487143 1 NC_013174.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: aeh:Mlg_1360 pyrimidine reductase, riboflavin biosynthesis, RibD; bifunctional deaminase-reductase domain-containing protein 1487143 8380563 Jden_1389 Jonesia denitrificans DSM 20603 bifunctional deaminase-reductase domain-containing protein YP_003161345.1 1486358 D 471856 CDS YP_003161346.1 256832619 8380564 complement(1487206..1488447) 1 NC_013174.1 KEGG: bac:BamMC406_1119 ATP-grasp enzyme-like protein; putative ATP-grasp protein 1488447 8380564 Jden_1390 Jonesia denitrificans DSM 20603 putative ATP-grasp protein YP_003161346.1 1487206 R 471856 CDS YP_003161347.1 256832620 8380565 1488572..1489144 1 NC_013174.1 hypothetical protein 1489144 8380565 Jden_1391 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161347.1 1488572 D 471856 CDS YP_003161348.1 256832621 8380566 1489166..1490386 1 NC_013174.1 PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: dol:Dole_3191 3'-5' exonuclease; 3'-5' exonuclease 1490386 8380566 Jden_1392 Jonesia denitrificans DSM 20603 3'-5' exonuclease YP_003161348.1 1489166 D 471856 CDS YP_003161349.1 256832622 8380567 1490397..1491392 1 NC_013174.1 KEGG: mch:Mchl_5045 hypothetical protein; hypothetical protein 1491392 8380567 Jden_1393 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161349.1 1490397 D 471856 CDS YP_003161350.1 256832623 8380568 1491596..1492819 1 NC_013174.1 KEGG: sfu:Sfum_1403 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1492819 8380568 Jden_1394 Jonesia denitrificans DSM 20603 acetyl-CoA acetyltransferase YP_003161350.1 1491596 D 471856 CDS YP_003161351.1 256832624 8380569 1492816..1494900 1 NC_013174.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 1494900 8380569 Jden_1395 Jonesia denitrificans DSM 20603 3-hydroxyacyl-CoA dehydrogenase YP_003161351.1 1492816 D 471856 CDS YP_003161352.1 256832625 8380570 1494985..1495200 1 NC_013174.1 KEGG: gur:Gura_3296 hypothetical protein; hypothetical protein 1495200 8380570 Jden_1396 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161352.1 1494985 D 471856 CDS YP_003161353.1 256832626 8380571 complement(1495282..1496214) 1 NC_013174.1 KEGG: rpe:RPE_3102 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 1496214 8380571 Jden_1397 Jonesia denitrificans DSM 20603 pyruvate formate-lyase activating enzyme YP_003161353.1 1495282 R 471856 CDS YP_003161354.1 256832627 8380572 complement(1496411..1498675) 1 NC_013174.1 KEGG: cvi:CV_1412 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; formate acetyltransferase 1498675 8380572 Jden_1398 Jonesia denitrificans DSM 20603 formate acetyltransferase YP_003161354.1 1496411 R 471856 CDS YP_003161355.1 256832628 8380573 complement(1499016..1500932) 1 NC_013174.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: bha:BH2779 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 1500932 8380573 Jden_1399 Jonesia denitrificans DSM 20603 deoxyxylulose-5-phosphate synthase YP_003161355.1 1499016 R 471856 CDS YP_003161356.1 256832629 8380574 complement(1501124..1501435) 1 NC_013174.1 PFAM: branched-chain amino acid transport; KEGG: mxa:MXAN_5157 hypothetical protein; branched-chain amino acid transport 1501435 8380574 Jden_1400 Jonesia denitrificans DSM 20603 branched-chain amino acid transport YP_003161356.1 1501124 R 471856 CDS YP_003161357.1 256832630 8380575 complement(1501432..1502142) 1 NC_013174.1 PFAM: AzlC family protein; KEGG: mxa:MXAN_5158 AzlC family protein; AzlC family protein 1502142 8380575 Jden_1401 Jonesia denitrificans DSM 20603 AzlC family protein YP_003161357.1 1501432 R 471856 CDS YP_003161358.1 256832631 8380576 complement(1502261..1505014) 1 NC_013174.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: eba:ebA6773 aconitate hydratase; aconitate hydratase 1 1505014 8380576 Jden_1402 Jonesia denitrificans DSM 20603 aconitate hydratase 1 YP_003161358.1 1502261 R 471856 CDS YP_003161359.1 256832632 8380577 complement(1505394..1506686) 1 NC_013174.1 PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)- methyltransferase RumA; deoxyribonuclease/rho motif-related TRAM 1506686 8380577 Jden_1403 Jonesia denitrificans DSM 20603 deoxyribonuclease/rho motif-related TRAM YP_003161359.1 1505394 R 471856 CDS YP_003161360.1 256832633 8380578 complement(1506694..1508730) 1 NC_013174.1 KEGG: bcz:BCZK1697 amino acid permease; amino acid permease 1508730 8380578 Jden_1404 Jonesia denitrificans DSM 20603 amino acid permease YP_003161360.1 1506694 R 471856 CDS YP_003161361.1 256832634 8380579 1508797..1509453 1 NC_013174.1 PFAM: TrkA-N domain protein; KEGG: rde:RD1_2464 trk potassium uptake system protein; TrkA-N domain-containing protein 1509453 8380579 Jden_1405 Jonesia denitrificans DSM 20603 TrkA-N domain-containing protein YP_003161361.1 1508797 D 471856 CDS YP_003161362.1 256832635 8380580 1509450..1510127 1 NC_013174.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tcx:Tcr_0187 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 1510127 8380580 Jden_1406 Jonesia denitrificans DSM 20603 TrkA-N domain-containing protein YP_003161362.1 1509450 D 471856 CDS YP_003161363.1 256832636 8380581 complement(1510057..1510800) 1 NC_013174.1 hypothetical protein 1510800 8380581 Jden_1407 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161363.1 1510057 R 471856 CDS YP_003161364.1 256832637 8380582 complement(1510802..1511182) 1 NC_013174.1 PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: msu:MS1735 RecG protein; OB-fold tRNA/helicase-type nucleic acid binding-protein 1511182 8380582 Jden_1408 Jonesia denitrificans DSM 20603 OB-fold tRNA/helicase-type nucleic acid binding-protein YP_003161364.1 1510802 R 471856 CDS YP_003161365.1 256832638 8380583 complement(1511183..1511884) 1 NC_013174.1 hypothetical protein 1511884 8380583 Jden_1409 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161365.1 1511183 R 471856 CDS YP_003161366.1 256832639 8380584 complement(1512016..1512492) 1 NC_013174.1 KEGG: mag:amb0201 dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 1512492 8380584 Jden_1410 Jonesia denitrificans DSM 20603 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_003161366.1 1512016 R 471856 CDS YP_003161367.1 256832640 8380585 complement(1512541..1512837) 1 NC_013174.1 hypothetical protein 1512837 8380585 Jden_1411 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161367.1 1512541 R 471856 CDS YP_003161368.1 256832641 8380586 complement(1513060..1513941) 1 NC_013174.1 PFAM: inositol monophosphatase; KEGG: rsq:Rsph17025_2324 inositol-phosphate phosphatase; inositol-phosphate phosphatase 1513941 8380586 Jden_1412 Jonesia denitrificans DSM 20603 inositol-phosphate phosphatase YP_003161368.1 1513060 R 471856 CDS YP_003161369.1 256832642 8380587 1514084..1515331 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1515331 8380587 Jden_1413 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161369.1 1514084 D 471856 CDS YP_003161370.1 256832643 8380588 complement(1515387..1516574) 1 NC_013174.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tgr:Tgr7_0170 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1516574 8380588 Jden_1414 Jonesia denitrificans DSM 20603 type I phosphodiesterase/nucleotide pyrophosphatase YP_003161370.1 1515387 R 471856 CDS YP_003161371.1 256832644 8380589 complement(1516571..1517179) 1 NC_013174.1 hypothetical protein 1517179 8380589 Jden_1415 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161371.1 1516571 R 471856 CDS YP_003161372.1 256832645 8380590 complement(1517215..1519944) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dps:DP0658 acetyl-CoA synthetase; N-acetyltransferase GCN5 1519944 8380590 Jden_1416 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161372.1 1517215 R 471856 CDS YP_003161373.1 256832646 8380591 1520081..1522567 1 NC_013174.1 KEGG: sus:Acid_3975 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA topoisomerase 1522567 8380591 Jden_1417 Jonesia denitrificans DSM 20603 DNA topoisomerase YP_003161373.1 1520081 D 471856 CDS YP_003161374.1 256832647 8380592 1522610..1526155 1 NC_013174.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: rru:Rru_A1531 methionine synthase (B12- dependent); methionine synthase 1526155 8380592 Jden_1418 Jonesia denitrificans DSM 20603 methionine synthase YP_003161374.1 1522610 D 471856 CDS YP_003161375.1 256832648 8381782 complement(1526963..1528624) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3337 ABC transporter, ATP- binding protein; ABC transporter 1528624 8381782 Jden_1420 Jonesia denitrificans DSM 20603 ABC transporter YP_003161375.1 1526963 R 471856 CDS YP_003161376.1 256832649 8380594 complement(1528608..1529573) 1 NC_013174.1 KEGG: hypothetical protein LOC686639; hypothetical protein 1529573 8380594 Jden_1421 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161376.1 1528608 R 471856 CDS YP_003161377.1 256832650 8380595 complement(1529570..1530340) 1 NC_013174.1 hypothetical protein 1530340 8380595 Jden_1422 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161377.1 1529570 R 471856 CDS YP_003161378.1 256832651 8380596 complement(1530366..1531418) 1 NC_013174.1 hypothetical protein 1531418 8380596 Jden_1423 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161378.1 1530366 R 471856 CDS YP_003161379.1 256832652 8380597 complement(1531524..1532660) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1532660 8380597 Jden_1424 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161379.1 1531524 R 471856 CDS YP_003161380.1 256832653 8380598 complement(1532657..1534828) 1 NC_013174.1 PFAM: DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; KEGG: bha:BH0006 DNA gyrase subunit B; DNA gyrase subunit B domain-containing protein 1534828 8380598 Jden_1425 Jonesia denitrificans DSM 20603 DNA gyrase subunit B domain-containing protein YP_003161380.1 1532657 R 471856 CDS YP_003161381.1 256832654 8380599 1534931..1535233 1 NC_013174.1 hypothetical protein 1535233 8380599 Jden_1426 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161381.1 1534931 D 471856 CDS YP_003161382.1 256832655 8380600 complement(1535363..1536877) 1 NC_013174.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD; RpoD subfamily RNA polymerase sigma-70 subunit 1536877 8380600 Jden_1427 Jonesia denitrificans DSM 20603 RpoD subfamily RNA polymerase sigma-70 subunit YP_003161382.1 1535363 R 471856 CDS YP_003161383.1 256832656 8380601 complement(1537119..1537520) 1 NC_013174.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 hypothetical protein; UspA domain-containing protein 1537520 8380601 Jden_1428 Jonesia denitrificans DSM 20603 UspA domain-containing protein YP_003161383.1 1537119 R 471856 CDS YP_003161384.1 256832657 8380602 complement(1537603..1538871) 1 NC_013174.1 hypothetical protein 1538871 8380602 Jden_1429 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161384.1 1537603 R 471856 CDS YP_003161385.1 256832658 8380603 1539038..1540144 1 NC_013174.1 PFAM: Polyprenyl synthetase; KEGG: scl:sce4204 geranyltranstransferase; polyprenyl synthetase 1540144 8380603 Jden_1430 Jonesia denitrificans DSM 20603 polyprenyl synthetase YP_003161385.1 1539038 D 471856 CDS YP_003161386.1 256832659 8380604 complement(1540169..1540588) 1 NC_013174.1 hypothetical protein 1540588 8380604 Jden_1431 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161386.1 1540169 R 471856 CDS YP_003161387.1 256832660 8380605 1540688..1542778 1 NC_013174.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bha:BH2504 serine/threonine protein kinase; serine/threonine protein kinase with PASTA sensor(s) 1542778 8380605 Jden_1432 Jonesia denitrificans DSM 20603 serine/threonine protein kinase with PASTA sensor(s) YP_003161387.1 1540688 D 471856 CDS YP_003161388.1 256832661 8380606 complement(1542847..1544163) 1 NC_013174.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pmy:Pmen_3429 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1544163 8380606 Jden_1433 Jonesia denitrificans DSM 20603 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003161388.1 1542847 R 471856 CDS YP_003161389.1 256832662 8380607 1544231..1544584 1 NC_013174.1 hypothetical protein 1544584 8380607 Jden_1434 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161389.1 1544231 D 471856 CDS YP_003161390.1 256832663 8381784 complement(1546460..1547815) 1 NC_013174.1 KEGG: psa:PST_2510 phospho-2-dehydro-3- deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 1547815 8381784 Jden_1437 Jonesia denitrificans DSM 20603 phospho-2-dehydro-3-deoxyheptonate aldolase YP_003161390.1 1546460 R 471856 CDS YP_003161391.1 256832664 8380609 complement(1547928..1549127) 1 NC_013174.1 PFAM: phosphofructokinase; KEGG: mno:Mnod_0681 phosphofructokinase; phosphofructokinase 1549127 8380609 Jden_1438 Jonesia denitrificans DSM 20603 phosphofructokinase YP_003161391.1 1547928 R 471856 CDS YP_003161392.1 256832665 8380610 complement(1549232..1550035) 1 NC_013174.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gur:Gura_4298 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1550035 8380610 Jden_1439 Jonesia denitrificans DSM 20603 phospholipid/glycerol acyltransferase YP_003161392.1 1549232 R 471856 CDS YP_003161393.1 256832666 8380611 1550095..1550625 1 NC_013174.1 hypothetical protein 1550625 8380611 Jden_1440 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161393.1 1550095 D 471856 CDS YP_003161394.1 256832667 8380612 complement(1550650..1551594) 1 NC_013174.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: mxa:MXAN_6497 glucokinase; ROK family glucokinase 1551594 8380612 Jden_1441 Jonesia denitrificans DSM 20603 ROK family glucokinase YP_003161394.1 1550650 R 471856 CDS YP_003161395.1 256832668 8380613 1551755..1553566 1 NC_013174.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2959 putative long-chain-fatty-acid-- CoA ligase; AMP-dependent synthetase and ligase 1553566 8380613 Jden_1442 Jonesia denitrificans DSM 20603 AMP-dependent synthetase and ligase YP_003161395.1 1551755 D 471856 CDS YP_003161396.1 256832669 8380614 1553690..1553971 1 NC_013174.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: dps:DP0751 transcription regulator; transcriptional regulator, AsnC family 1553971 8380614 Jden_1443 Jonesia denitrificans DSM 20603 transcriptional regulator, AsnC family YP_003161396.1 1553690 D 471856 CDS YP_003161397.1 256832670 8380615 complement(1553991..1555070) 1 NC_013174.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; KEGG: hypothetical protein; K00766 anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 1555070 8380615 Jden_1444 Jonesia denitrificans DSM 20603 anthranilate phosphoribosyltransferase YP_003161397.1 1553991 R 471856 CDS YP_003161398.1 256832671 8380616 complement(1555067..1555486) 1 NC_013174.1 KEGG: sus:Acid_3636 two component transcriptional regulator; response regulator receiver protein 1555486 8380616 Jden_1445 Jonesia denitrificans DSM 20603 response regulator receiver protein YP_003161398.1 1555067 R 471856 CDS YP_003161399.1 256832672 8380617 1555835..1556476 1 NC_013174.1 PFAM: cytochrome c oxidase subunit III; KEGG: oan:Oant_0050 cytochrome o ubiquinol oxidase subunit III; cytochrome c oxidase subunit III 1556476 8380617 Jden_1446 Jonesia denitrificans DSM 20603 cytochrome c oxidase subunit III YP_003161399.1 1555835 D 471856 CDS YP_003161400.1 256832673 8380618 1556487..1557341 1 NC_013174.1 PFAM: cytochrome c class I; KEGG: pnu:Pnuc_0456 cytochrome c oxidase, cbb3- type, subunit III; cytochrome c class I 1557341 8380618 Jden_1447 Jonesia denitrificans DSM 20603 cytochrome c class I YP_003161400.1 1556487 D 471856 CDS YP_003161401.1 256832674 8380619 1557338..1558354 1 NC_013174.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll6221 Rieske iron-sulfur protein; Rieske (2Fe-2S) domain-containing protein 1558354 8380619 Jden_1448 Jonesia denitrificans DSM 20603 Rieske (2Fe-2S) domain-containing protein YP_003161401.1 1557338 D 471856 CDS YP_003161402.1 256832675 8380620 1558351..1559994 1 NC_013174.1 PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_6208 cytochrome b/b6 domain- containing protein; cytochrome b/b6 domain-containing protein 1559994 8380620 Jden_1449 Jonesia denitrificans DSM 20603 cytochrome b/b6 domain-containing protein YP_003161402.1 1558351 D 471856 CDS YP_003161403.1 256832676 8380621 1560175..1560795 1 NC_013174.1 PFAM: manganese and iron superoxide dismutase; KEGG: hypothetical protein; K04564 superoxide dismutase, Fe-Mn family; Superoxide dismutase 1560795 8380621 Jden_1450 Jonesia denitrificans DSM 20603 Superoxide dismutase YP_003161403.1 1560175 D 471856 CDS YP_003161404.1 256832677 8380622 complement(1560974..1561375) 1 NC_013174.1 hypothetical protein 1561375 8380622 Jden_1451 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161404.1 1560974 R 471856 CDS YP_003161405.1 256832678 8380623 complement(1561375..1563126) 1 NC_013174.1 KEGG: bha:BH2614 cytochrome caa3 oxidase (subunit I); TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 1563126 8380623 Jden_1452 Jonesia denitrificans DSM 20603 cytochrome c oxidase subunit I YP_003161405.1 1561375 R 471856 CDS YP_003161406.1 256832679 8380624 complement(1563126..1564025) 1 NC_013174.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: ppr:PBPRA0167 putative cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 1564025 8380624 Jden_1453 Jonesia denitrificans DSM 20603 cytochrome c oxidase subunit II YP_003161406.1 1563126 R 471856 CDS YP_003161407.1 256832680 8380625 1564276..1565469 1 NC_013174.1 PFAM: aminotransferase class V; KEGG: dds:Ddes_1075 cysteine desulfurase NifS; cysteine desulfurase 1565469 8380625 Jden_1454 Jonesia denitrificans DSM 20603 cysteine desulfurase YP_003161407.1 1564276 D 471856 CDS YP_003161408.1 256832681 8380626 1565469..1565693 1 NC_013174.1 PFAM: SirA family protein; KEGG: hha:Hhal_1218 SirA family protein; SirA family protein 1565693 8380626 Jden_1455 Jonesia denitrificans DSM 20603 SirA family protein YP_003161408.1 1565469 D 471856 CDS YP_003161409.1 256832682 8380627 complement(1565835..1566185) 1 NC_013174.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cja:CJA_0888 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly accessory protein 1566185 8380627 Jden_1456 Jonesia denitrificans DSM 20603 iron-sulfur cluster assembly accessory protein YP_003161409.1 1565835 R 471856 CDS YP_003161410.1 256832683 8380628 complement(1566371..1567528) 1 NC_013174.1 KEGG: pen:PSEEN2878 glycerate kinase; hypothetical protein 1567528 8380628 Jden_1457 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161410.1 1566371 R 471856 CDS YP_003161411.1 256832684 8380629 1567587..1568738 1 NC_013174.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: aba:Acid345_4317 quinolinate synthetase; quinolinate synthetase complex subunit A 1568738 8380629 Jden_1458 Jonesia denitrificans DSM 20603 quinolinate synthetase complex subunit A YP_003161411.1 1567587 D 471856 CDS YP_003161412.1 256832685 8380630 1568774..1569376 1 NC_013174.1 PFAM: thioesterase superfamily protein; KEGG: bpy:Bphyt_2747 thioesterase superfamily protein; thioesterase superfamily protein 1569376 8380630 Jden_1459 Jonesia denitrificans DSM 20603 thioesterase superfamily protein YP_003161412.1 1568774 D 471856 CDS YP_003161413.1 256832686 8380631 complement(1569427..1570764) 1 NC_013174.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_6011 peptidase, M20 (glutamate carboxypeptidase) family; peptidase M20 1570764 8380631 Jden_1460 Jonesia denitrificans DSM 20603 peptidase M20 YP_003161413.1 1569427 R 471856 CDS YP_003161414.1 256832687 8380632 1570905..1571444 1 NC_013174.1 hypothetical protein 1571444 8380632 Jden_1461 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161414.1 1570905 D 471856 CDS YP_003161415.1 256832688 8380633 1571505..1572506 1 NC_013174.1 PFAM: aldo/keto reductase; KEGG: mxa:MXAN_6482 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 1572506 8380633 Jden_1462 Jonesia denitrificans DSM 20603 aldo/keto reductase YP_003161415.1 1571505 D 471856 CDS YP_003161416.1 256832689 8380634 complement(1572606..1573652) 1 NC_013174.1 KEGG: maq:Maqu_1037 dihydroorotate oxidase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 1573652 8380634 Jden_1463 Jonesia denitrificans DSM 20603 dihydroorotate dehydrogenase YP_003161416.1 1572606 R 471856 CDS YP_003161417.1 256832690 8380635 complement(1573663..1574142) 1 NC_013174.1 KEGG: oca:OCAR_4791 hypothetical protein; hypothetical protein 1574142 8380635 Jden_1464 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161417.1 1573663 R 471856 CDS YP_003161418.1 256832691 8380636 complement(1574130..1574486) 1 NC_013174.1 hypothetical protein 1574486 8380636 Jden_1465 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161418.1 1574130 R 471856 CDS YP_003161419.1 256832692 8380637 1574541..1576013 1 NC_013174.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: afw:Anae109_0328 leucyl aminopeptidase; leucyl aminopeptidase 1576013 8380637 Jden_1466 Jonesia denitrificans DSM 20603 leucyl aminopeptidase YP_003161419.1 1574541 D 471856 CDS YP_003161420.1 256832693 8380638 complement(1576133..1576252) 1 NC_013174.1 hypothetical protein 1576252 8380638 Jden_1467 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161420.1 1576133 R 471856 CDS YP_003161421.1 256832694 8380639 complement(1576407..1577240) 1 NC_013174.1 PFAM: Abortive infection protein; KEGG: bja:bll5096 hypothetical protein; Abortive infection protein 1577240 8380639 Jden_1468 Jonesia denitrificans DSM 20603 Abortive infection protein YP_003161421.1 1576407 R 471856 CDS YP_003161422.1 256832695 8380640 complement(1577237..1578235) 1 NC_013174.1 KEGG: bam:Bamb_3325 hypothetical protein; hypothetical protein 1578235 8380640 Jden_1469 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161422.1 1577237 R 471856 CDS YP_003161423.1 256832696 8380641 complement(1578228..1578869) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: bcb:BCB4264_A4968 transcriptional regulator, TetR family domain protein; TetR family transcriptional regulator 1578869 8380641 Jden_1470 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003161423.1 1578228 R 471856 CDS YP_003161424.1 256832697 8381785 1579360..1579779 1 NC_013174.1 hypothetical protein 1579779 8381785 Jden_1472 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161424.1 1579360 D 471856 CDS YP_003161425.1 256832698 8380643 1579837..1580073 1 NC_013174.1 hypothetical protein 1580073 8380643 Jden_1473 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161425.1 1579837 D 471856 CDS YP_003161426.1 256832699 8380644 complement(1580483..1580821) 1 NC_013174.1 hypothetical protein 1580821 8380644 Jden_1474 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161426.1 1580483 R 471856 CDS YP_003161427.1 256832700 8380645 1581037..1582422 1 NC_013174.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: bcy:Bcer98_2857 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1582422 8380645 Jden_1475 Jonesia denitrificans DSM 20603 dihydrolipoamide dehydrogenase YP_003161427.1 1581037 D 471856 CDS YP_003161428.1 256832701 8380646 1582447..1584546 1 NC_013174.1 KEGG: aba:Acid345_4350 2-oxoglutarate dehydrogenase E2 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 1584546 8380646 Jden_1476 Jonesia denitrificans DSM 20603 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_003161428.1 1582447 D 471856 CDS YP_003161429.1 256832702 8380647 1584695..1585636 1 NC_013174.1 PFAM: domain of unknown function DUF1731; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: dol:Dole_3066 hypothetical protein; hypothetical protein 1585636 8380647 Jden_1477 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161429.1 1584695 D 471856 CDS YP_003161430.1 256832703 8380648 complement(1585633..1587006) 1 NC_013174.1 KEGG: GK12566 gene product from transcript GK12566- RA; hypothetical protein 1587006 8380648 Jden_1478 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161430.1 1585633 R 471856 CDS YP_003161431.1 256832704 8380649 complement(1587079..1588125) 1 NC_013174.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 Gfo/Idh/MocA family oxidoreductase; oxidoreductase domain-containing protein 1588125 8380649 Jden_1479 Jonesia denitrificans DSM 20603 oxidoreductase domain-containing protein YP_003161431.1 1587079 R 471856 CDS YP_003161432.1 256832705 8380650 1588154..1588912 1 NC_013174.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: gsu:GSU2434 lipoate-protein ligase B; lipoate-protein ligase B 1588912 8380650 Jden_1480 Jonesia denitrificans DSM 20603 lipoate-protein ligase B YP_003161432.1 1588154 D 471856 CDS YP_003161433.1 256832706 8380651 1588923..1589942 1 NC_013174.1 KEGG: mmr:Mmar10_1436 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 1589942 8380651 Jden_1481 Jonesia denitrificans DSM 20603 lipoic acid synthetase YP_003161433.1 1588923 D 471856 CDS YP_003161434.1 256832707 8380652 1589966..1590685 1 NC_013174.1 hypothetical protein 1590685 8380652 Jden_1482 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161434.1 1589966 D 471856 CDS YP_003161435.1 256832708 8380653 complement(1590717..1591145) 1 NC_013174.1 PFAM: RDD domain containing protein; RDD domain-containing protein 1591145 8380653 Jden_1483 Jonesia denitrificans DSM 20603 RDD domain-containing protein YP_003161435.1 1590717 R 471856 CDS YP_003161436.1 256832709 8380654 1591377..1592801 1 NC_013174.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I; glutamine synthetase, type I 1592801 8380654 Jden_1484 Jonesia denitrificans DSM 20603 glutamine synthetase, type I YP_003161436.1 1591377 D 471856 CDS YP_003161437.1 256832710 8380655 1592963..1594330 1 NC_013174.1 PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_2875 hypothetical protein; hypothetical protein 1594330 8380655 Jden_1485 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161437.1 1592963 D 471856 CDS YP_003161438.1 256832711 8380656 complement(1594337..1597462) 1 NC_013174.1 PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: gme:Gmet_0071 glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 1597462 8380656 Jden_1486 Jonesia denitrificans DSM 20603 (glutamate--ammonia-ligase) adenylyltransferase YP_003161438.1 1594337 R 471856 CDS YP_003161439.1 256832712 8380657 complement(1597524..1598858) 1 NC_013174.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase; glutamine synthetase, type I 1598858 8380657 Jden_1487 Jonesia denitrificans DSM 20603 glutamine synthetase, type I YP_003161439.1 1597524 R 471856 CDS YP_003161440.1 256832713 8380658 1598940..1600601 1 NC_013174.1 KEGG: csa:Csal_0495 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; ExsB family protein; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase; NAD+ synthetase 1600601 8380658 Jden_1488 Jonesia denitrificans DSM 20603 NAD+ synthetase YP_003161440.1 1598940 D 471856 CDS YP_003161441.1 256832714 8380659 1600647..1601468 1 NC_013174.1 KEGG: pca:Pcar_1830 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1601468 8380659 Jden_1489 Jonesia denitrificans DSM 20603 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003161441.1 1600647 D 471856 CDS YP_003161442.1 256832715 8380660 complement(1601532..1601723) 1 NC_013174.1 hypothetical protein 1601723 8380660 Jden_1490 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161442.1 1601532 R 471856 CDS YP_003161443.1 256832716 8380661 1601889..1602770 1 NC_013174.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mxa:MXAN_7084 methionine aminopeptidase; methionine aminopeptidase 1602770 8380661 Jden_1491 Jonesia denitrificans DSM 20603 methionine aminopeptidase YP_003161443.1 1601889 D 471856 CDS YP_003161444.1 256832717 8380662 1602767..1603582 1 NC_013174.1 PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein; ROK family protein 1603582 8380662 Jden_1492 Jonesia denitrificans DSM 20603 ROK family protein YP_003161444.1 1602767 D 471856 CDS YP_003161445.1 256832718 8380663 complement(1603646..1603954) 1 NC_013174.1 hypothetical protein 1603954 8380663 Jden_1493 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161445.1 1603646 R 471856 CDS YP_003161446.1 256832719 8380664 1604198..1604380 1 NC_013174.1 hypothetical protein 1604380 8380664 Jden_1494 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161446.1 1604198 D 471856 CDS YP_003161447.1 256832720 8380665 complement(1604400..1604714) 1 NC_013174.1 hypothetical protein 1604714 8380665 Jden_1495 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161447.1 1604400 R 471856 CDS YP_003161448.1 256832721 8381786 1605356..1606147 1 NC_013174.1 PFAM: protein of unknown function DUF328; KEGG: sun:SUN_0122 hypothetical protein; hypothetical protein 1606147 8381786 Jden_1496 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161448.1 1605356 D 471856 CDS YP_003161449.1 256832722 8380667 complement(1606165..1606893) 1 NC_013174.1 PFAM: protein of unknown function DUF164; KEGG: ade:Adeh_0722 hypothetical protein; hypothetical protein 1606893 8380667 Jden_1497 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161449.1 1606165 R 471856 CDS YP_003161450.1 256832723 8380668 complement(1606939..1607829) 1 NC_013174.1 PFAM: protein of unknown function DUF34; KEGG: dps:DP0634 hypothetical protein; hypothetical protein 1607829 8380668 Jden_1498 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161450.1 1606939 R 471856 CDS YP_003161451.1 256832724 8381787 1608268..1609833 1 NC_013174.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_2421 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 1609833 8381787 Jden_1499 Jonesia denitrificans DSM 20603 type I restriction-modification system, M subunit YP_003161451.1 1608268 D 471856 CDS YP_003161452.1 256832725 8380670 1609830..1611026 1 NC_013174.1 PFAM: restriction modification system DNA specificity domain; KEGG: ecg:E2348C_4609 predicted type I restriction- modification enzyme S subunit; restriction modification system DNA specificity domain-containing protein 1611026 8380670 Jden_1500 Jonesia denitrificans DSM 20603 restriction modification system DNA specificity domain-containing protein YP_003161452.1 1609830 D 471856 CDS YP_003161453.1 256832726 8380671 1611023..1614127 1 NC_013174.1 KEGG: vei:Veis_2424 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 1614127 8380671 Jden_1501 Jonesia denitrificans DSM 20603 HsdR family type I site-specific deoxyribonuclease YP_003161453.1 1611023 D 471856 CDS YP_003161454.1 256832727 8380672 1614198..1615427 1 NC_013174.1 KEGG: dal:Dalk_1289 hypothetical protein; hypothetical protein 1615427 8380672 Jden_1502 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161454.1 1614198 D 471856 CDS YP_003161455.1 256832728 8380673 1615421..1617799 1 NC_013174.1 KEGG: rme:Rmet_5563 hypothetical protein; hypothetical protein 1617799 8380673 Jden_1503 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161455.1 1615421 D 471856 CDS YP_003161456.1 256832729 8381788 complement(1618093..1618359) 1 NC_013174.1 hypothetical protein 1618359 8381788 Jden_1505 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161456.1 1618093 R 471856 CDS YP_003161457.1 256832730 8380675 complement(1618442..1618828) 1 NC_013174.1 KEGG: hne:HNE_0023 hypothetical protein; hypothetical protein 1618828 8380675 Jden_1506 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161457.1 1618442 R 471856 CDS YP_003161458.1 256832731 8380676 complement(1618884..1619495) 1 NC_013174.1 PFAM: protein of unknown function DUF1349; KEGG: rle:pRL110453 hypothetical protein; hypothetical protein 1619495 8380676 Jden_1507 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161458.1 1618884 R 471856 CDS YP_003161459.1 256832732 8380677 complement(1619524..1620171) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: rle:pRL120345 TetR family transcriptional regulator; TetR family transcriptional regulator 1620171 8380677 Jden_1508 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003161459.1 1619524 R 471856 CDS YP_003161460.1 256832733 8380678 complement(1620214..1621338) 1 NC_013174.1 TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: aeh:Mlg_0221 transaldolase; transaldolase 1621338 8380678 Jden_1509 Jonesia denitrificans DSM 20603 transaldolase YP_003161460.1 1620214 R 471856 CDS YP_003161461.1 256832734 8380679 complement(1621377..1621856) 1 NC_013174.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: azc:AZC_1350 AhpC/TSA family protein; alkyl hydroperoxide reductase 1621856 8380679 Jden_1510 Jonesia denitrificans DSM 20603 alkyl hydroperoxide reductase YP_003161461.1 1621377 R 471856 CDS YP_003161462.1 256832735 8380680 complement(1621927..1622340) 1 NC_013174.1 hypothetical protein 1622340 8380680 Jden_1511 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161462.1 1621927 R 471856 CDS YP_003161463.1 256832736 8380681 1622773..1625520 1 NC_013174.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: tgr:Tgr7_2456 pyruvate dehydrogenase (acetyl- transferring); 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 1625520 8380681 Jden_1512 Jonesia denitrificans DSM 20603 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YP_003161463.1 1622773 D 471856 CDS YP_003161464.1 256832737 8380682 complement(1625619..1626305) 1 NC_013174.1 hypothetical protein 1626305 8380682 Jden_1513 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161464.1 1625619 R 471856 CDS YP_003161465.1 256832738 8380683 1626372..1627631 1 NC_013174.1 KEGG: reu:Reut_B5661 CdaR family transcriptional regulator; putative PucR family transcriptional regulator 1627631 8380683 Jden_1514 Jonesia denitrificans DSM 20603 putative PucR family transcriptional regulator YP_003161465.1 1626372 D 471856 CDS YP_003161466.1 256832739 8380684 1627802..1628743 1 NC_013174.1 PFAM: Acyl transferase; KEGG: reu:Reut_A2264 [acyl-carrier-protein] S- malonyltransferase; ACP S-malonyltransferase 1628743 8380684 Jden_1515 Jonesia denitrificans DSM 20603 ACP S-malonyltransferase YP_003161466.1 1627802 D 471856 CDS YP_003161467.1 256832740 8380685 1628765..1629766 1 NC_013174.1 KEGG: cvi:CV_3416 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-oxoacyl-ACP synthase 1629766 8380685 Jden_1516 Jonesia denitrificans DSM 20603 3-oxoacyl-ACP synthase YP_003161467.1 1628765 D 471856 CDS YP_003161468.1 256832741 8380686 1629817..1630065 1 NC_013174.1 PFAM: phosphopantetheine-binding; KEGG: swi:Swit_0088 acyl carrier protein; phosphopantetheine-binding protein 1630065 8380686 Jden_1517 Jonesia denitrificans DSM 20603 phosphopantetheine-binding protein YP_003161468.1 1629817 D 471856 CDS YP_003161469.1 256832742 8380687 1630124..1631362 1 NC_013174.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cja:CJA_1678 beta-ketoacyl synthase, N- terminal domain protein; 3-oxoacyl-ACP synthase 1631362 8380687 Jden_1518 Jonesia denitrificans DSM 20603 3-oxoacyl-ACP synthase YP_003161469.1 1630124 D 471856 CDS YP_003161470.1 256832743 8380688 complement(1631474..1631974) 1 NC_013174.1 hypothetical protein 1631974 8380688 Jden_1519 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161470.1 1631474 R 471856 CDS YP_003161471.1 256832744 8380689 complement(1632100..1632588) 1 NC_013174.1 KEGG: hha:Hhal_2323 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 1632588 8380689 Jden_1520 Jonesia denitrificans DSM 20603 peptide deformylase YP_003161471.1 1632100 R 471856 CDS YP_003161472.1 256832745 8381789 1632793..1633386 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1633386 8381789 Jden_1521 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161472.1 1632793 D 471856 CDS YP_003161473.1 256832746 8381791 complement(1633716..1635620) 1 NC_013174.1 KEGG: glo:Glov_1014 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase DnaG DnaB-binding; DNA primase 1635620 8381791 Jden_1522 Jonesia denitrificans DSM 20603 DNA primase YP_003161473.1 1633716 R 471856 CDS YP_003161474.1 256832747 8380692 complement(1635687..1636976) 1 NC_013174.1 KEGG: aba:Acid345_0225 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 1636976 8380692 Jden_1523 Jonesia denitrificans DSM 20603 deoxyguanosinetriphosphate triphosphohydrolase YP_003161474.1 1635687 R 471856 CDS YP_003161475.1 256832748 8380693 complement(1637010..1638914) 1 NC_013174.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: spe:Spro_1049 maltodextrin glucosidase; alpha amylase 1638914 8380693 Jden_1524 Jonesia denitrificans DSM 20603 alpha amylase YP_003161475.1 1637010 R 471856 CDS YP_003161476.1 256832749 8380694 complement(1638923..1639825) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcb:BCB4264_A4117 maltosaccharide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1639825 8380694 Jden_1525 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161476.1 1638923 R 471856 CDS YP_003161477.1 256832750 8380695 complement(1639827..1641431) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS2069 maltose transporter membrane protein; Fructose-bisphosphate aldolase 1641431 8380695 Jden_1526 Jonesia denitrificans DSM 20603 Fructose-bisphosphate aldolase YP_003161477.1 1639827 R 471856 CDS YP_003161478.1 256832751 8380696 complement(1641600..1642838) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: pmy:Pmen_3132 maltose ABC transporter periplasmic protein; extracellular solute-binding protein 1642838 8380696 Jden_1527 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003161478.1 1641600 R 471856 CDS YP_003161479.1 256832752 8380697 1643161..1644231 1 NC_013174.1 KEGG: bsu:BSU10840 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 1644231 8380697 Jden_1528 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003161479.1 1643161 D 471856 CDS YP_003161480.1 256832753 8380698 1644282..1646063 1 NC_013174.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hypothetical protein; K01187 alpha- glucosidase; alpha amylase 1646063 8380698 Jden_1529 Jonesia denitrificans DSM 20603 alpha amylase YP_003161480.1 1644282 D 471856 CDS YP_003161481.1 256832754 8380699 complement(1646183..1647325) 1 NC_013174.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: hypothetical protein; nifR3 family TIM-barrel protein 1647325 8380699 Jden_1530 Jonesia denitrificans DSM 20603 nifR3 family TIM-barrel protein YP_003161481.1 1646183 R 471856 CDS YP_003161482.1 256832755 8380700 1647463..1647864 1 NC_013174.1 hypothetical protein 1647864 8380700 Jden_1531 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161482.1 1647463 D 471856 CDS YP_003161483.1 256832756 8380701 complement(1647984..1649369) 1 NC_013174.1 TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: bba:Bd1147 glycyl-tRNA synthetase; glycyl-tRNA synthetase 1649369 8380701 Jden_1532 Jonesia denitrificans DSM 20603 glycyl-tRNA synthetase YP_003161483.1 1647984 R 471856 CDS YP_003161484.1 256832757 8380702 1649540..1650466 1 NC_013174.1 PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; periplasmic solute binding protein 1650466 8380702 Jden_1533 Jonesia denitrificans DSM 20603 periplasmic solute binding protein YP_003161484.1 1649540 D 471856 CDS YP_003161485.1 256832758 8380703 1650463..1651242 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_2064 ABC transporter-related protein; ABC transporter 1651242 8380703 Jden_1534 Jonesia denitrificans DSM 20603 ABC transporter YP_003161485.1 1650463 D 471856 CDS YP_003161486.1 256832759 8380704 1651239..1652177 1 NC_013174.1 PFAM: ABC-3 protein; KEGG: gbm:Gbem_3532 ABC-3 protein; ABC transporter 1652177 8380704 Jden_1535 Jonesia denitrificans DSM 20603 ABC transporter YP_003161486.1 1651239 D 471856 CDS YP_003161487.1 256832760 8380705 1652165..1652557 1 NC_013174.1 PFAM: ferric-uptake regulator; KEGG: gsu:GSU1379 ferric uptake regulation protein Fur; ferric uptake regulator, Fur family 1652557 8380705 Jden_1536 Jonesia denitrificans DSM 20603 ferric uptake regulator, Fur family YP_003161487.1 1652165 D 471856 CDS YP_003161488.1 256832761 8380706 1652614..1653132 1 NC_013174.1 KEGG: xop:PXO_02300 PAP2 superfamily protein; hypothetical protein 1653132 8380706 Jden_1537 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161488.1 1652614 D 471856 CDS YP_003161489.1 256832762 8380707 complement(1653161..1653943) 1 NC_013174.1 KEGG: oca:OCAR_5959 di-trans,poly-cis- decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 1653943 8380707 Jden_1538 Jonesia denitrificans DSM 20603 UDP diphosphate synthase YP_003161489.1 1653161 R 471856 CDS YP_003161490.1 256832763 8380708 complement(1653921..1654676) 1 NC_013174.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: ank:AnaeK_2557 DNA repair protein RecO; DNA repair protein RecO 1654676 8380708 Jden_1539 Jonesia denitrificans DSM 20603 DNA repair protein RecO YP_003161490.1 1653921 R 471856 CDS YP_003161491.1 256832764 8380709 complement(1654710..1656470) 1 NC_013174.1 KEGG: rme:Rmet_5887 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 1656470 8380709 Jden_1540 Jonesia denitrificans DSM 20603 2-isopropylmalate synthase YP_003161491.1 1654710 R 471856 CDS YP_003161492.1 256832765 8380710 complement(1656751..1658577) 1 NC_013174.1 KEGG: ATM/ATR-like kinase; K08874 transformation/transcription domain-associated protein; hypothetical protein 1658577 8380710 Jden_1541 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161492.1 1656751 R 471856 CDS YP_003161493.1 256832766 8380711 complement(1658660..1660399) 1 NC_013174.1 KEGG: AQP6; aquaporin 6, kidney specific; K09868 aquaporin-6; hypothetical protein 1660399 8380711 Jden_1542 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161493.1 1658660 R 471856 CDS YP_003161494.1 256832767 8380712 complement(1660456..1661400) 1 NC_013174.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bha:BH1367 Era/ThdF family GTP-binding protein; GTP-binding protein Era 1661400 8380712 Jden_1543 Jonesia denitrificans DSM 20603 GTP-binding protein Era YP_003161494.1 1660456 R 471856 CDS YP_003161495.1 256832768 8380713 complement(1661412..1662737) 1 NC_013174.1 PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dno:DNO_0936 transporter associated domain- containing protein; hypothetical protein 1662737 8380713 Jden_1544 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161495.1 1661412 R 471856 CDS YP_003161496.1 256832769 8380714 complement(1662742..1663197) 1 NC_013174.1 PFAM: protein of unknown function UPF0054; KEGG: bca:BCE_4383 putative metalloprotease; hypothetical protein 1663197 8380714 Jden_1545 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161496.1 1662742 R 471856 CDS YP_003161497.1 256832770 8380715 complement(1663203..1664255) 1 NC_013174.1 PFAM: PhoH family protein; KEGG: bha:BH1361 phosphate starvation-induced protein; PhoH family protein 1664255 8380715 Jden_1546 Jonesia denitrificans DSM 20603 PhoH family protein YP_003161497.1 1663203 R 471856 CDS YP_003161498.1 256832771 8380716 complement(1664338..1664697) 1 NC_013174.1 PFAM: histidine triad (HIT) protein; KEGG: dol:Dole_2448 histidine triad (HIT) protein; histidine triad (HIT) protein 1664697 8380716 Jden_1547 Jonesia denitrificans DSM 20603 histidine triad (HIT) protein YP_003161498.1 1664338 R 471856 CDS YP_003161499.1 256832772 8380717 complement(1664785..1665558) 1 NC_013174.1 PFAM: protein of unknown function DUF558; KEGG: bmn:BMA10247_3313 hypothetical protein; hypothetical protein 1665558 8380717 Jden_1548 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161499.1 1664785 R 471856 CDS YP_003161500.1 256832773 8380718 complement(1665565..1666683) 1 NC_013174.1 PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: bha:BH1348 heat-shock protein (activation of DnaK); chaperone DnaJ domain-containing protein 1666683 8380718 Jden_1549 Jonesia denitrificans DSM 20603 chaperone DnaJ domain-containing protein YP_003161500.1 1665565 R 471856 CDS YP_003161501.1 256832774 8380719 complement(1666735..1667754) 1 NC_013174.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: gme:Gmet_3534 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA 1667754 8380719 Jden_1550 Jonesia denitrificans DSM 20603 heat-inducible transcription repressor HrcA YP_003161501.1 1666735 R 471856 CDS YP_003161502.1 256832775 8380720 1667896..1668750 1 NC_013174.1 hypothetical protein 1668750 8380720 Jden_1551 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161502.1 1667896 D 471856 CDS YP_003161503.1 256832776 8380721 complement(1668834..1669733) 1 NC_013174.1 KEGG: scl:sce8934 hypothetical protein; integral membrane protein 1669733 8380721 Jden_1552 Jonesia denitrificans DSM 20603 integral membrane protein YP_003161503.1 1668834 R 471856 CDS YP_003161504.1 256832777 8380722 complement(1669836..1671107) 1 NC_013174.1 KEGG: sfu:Sfum_1360 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1671107 8380722 Jden_1553 Jonesia denitrificans DSM 20603 oxygen-independent coproporphyrinogen III oxidase YP_003161504.1 1669836 R 471856 CDS YP_003161505.1 256832778 8380723 complement(1671115..1672977) 1 NC_013174.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bsu:BSU25510 GTP-binding protein LepA; GTP-binding protein LepA 1672977 8380723 Jden_1554 Jonesia denitrificans DSM 20603 GTP-binding protein LepA YP_003161505.1 1671115 R 471856 CDS YP_003161506.1 256832779 8380724 1673138..1673689 1 NC_013174.1 hypothetical protein 1673689 8380724 Jden_1555 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161506.1 1673138 D 471856 CDS YP_003161507.1 256832780 8380725 1673942..1674202 1 NC_013174.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: bha:BH1339 30S ribosomal protein S20; 30S ribosomal protein S20 1674202 8380725 Jden_1556 Jonesia denitrificans DSM 20603 30S ribosomal protein S20 YP_003161507.1 1673942 D 471856 CDS YP_003161508.1 256832781 8380726 complement(1674315..1675025) 1 NC_013174.1 hypothetical protein 1675025 8380726 Jden_1557 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161508.1 1674315 R 471856 CDS YP_003161509.1 256832782 8380727 complement(1675028..1675894) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3493 ABC transporter ATP-binding protein; ABC transporter 1675894 8380727 Jden_1558 Jonesia denitrificans DSM 20603 ABC transporter YP_003161509.1 1675028 R 471856 CDS YP_003161510.1 256832783 8380728 complement(1675887..1676255) 1 NC_013174.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH3492 GntR family transcriptional regulator; GntR family transcriptional regulator 1676255 8380728 Jden_1559 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003161510.1 1675887 R 471856 CDS YP_003161511.1 256832784 8380729 complement(1676376..1677368) 1 NC_013174.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: bcy:Bcer98_3050 DNA polymerase III subunit delta; DNA polymerase III subunit delta 1677368 8380729 Jden_1560 Jonesia denitrificans DSM 20603 DNA polymerase III subunit delta YP_003161511.1 1676376 R 471856 CDS YP_003161512.1 256832785 8380730 complement(1677444..1679924) 1 NC_013174.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: afw:Anae109_2499 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein 1679924 8380730 Jden_1561 Jonesia denitrificans DSM 20603 ComEC/Rec2-like protein YP_003161512.1 1677444 R 471856 CDS YP_003161513.1 256832786 8380731 complement(1679921..1680706) 1 NC_013174.1 SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; helix-hairpin-helix DNA-binding class 1 1680706 8380731 Jden_1562 Jonesia denitrificans DSM 20603 helix-hairpin-helix DNA-binding class 1 YP_003161513.1 1679921 R 471856 CDS YP_003161514.1 256832787 8380732 complement(1680807..1681649) 1 NC_013174.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: dvu:DVU1942 DAK2 and DegV domain-containing protein; degV family protein 1681649 8380732 Jden_1563 Jonesia denitrificans DSM 20603 degV family protein YP_003161514.1 1680807 R 471856 CDS YP_003161515.1 256832788 8380733 1681810..1683129 1 NC_013174.1 KEGG: hypothetical protein LOC100147867; hypothetical protein 1683129 8380733 Jden_1564 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161515.1 1681810 D 471856 CDS YP_003161516.1 256832789 8380734 complement(1683097..1686552) 1 NC_013174.1 KEGG: xca:xccb100_4377 putative ATP-binding protein; hypothetical protein 1686552 8380734 Jden_1565 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161516.1 1683097 R 471856 CDS YP_003161517.1 256832790 8380735 complement(1686539..1687228) 1 NC_013174.1 KEGG: xop:PXO_03538 hypothetical protein; hypothetical protein 1687228 8380735 Jden_1566 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161517.1 1686539 R 471856 CDS YP_003161518.1 256832791 8380736 complement(1687225..1688793) 1 NC_013174.1 KEGG: plu:plu0106 hypothetical protein; hypothetical protein 1688793 8380736 Jden_1567 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161518.1 1687225 R 471856 CDS YP_003161519.1 256832792 8380737 complement(1688868..1691822) 1 NC_013174.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: hypothetical protein; K01869 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1691822 8380737 Jden_1568 Jonesia denitrificans DSM 20603 leucyl-tRNA synthetase YP_003161519.1 1688868 R 471856 CDS YP_003161520.1 256832793 8380738 complement(1691883..1693109) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A0872 putative transport transmembrane protein; major facilitator superfamily protein 1693109 8380738 Jden_1569 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161520.1 1691883 R 471856 CDS YP_003161521.1 256832794 8380739 complement(1693106..1693795) 1 NC_013174.1 PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor; DtxR family iron (metal) dependent repressor 1693795 8380739 Jden_1570 Jonesia denitrificans DSM 20603 DtxR family iron (metal) dependent repressor YP_003161521.1 1693106 R 471856 CDS YP_003161522.1 256832795 8380740 complement(1693792..1695729) 1 NC_013174.1 PFAM: metallophosphoesterase; metallophosphoesterase 1695729 8380740 Jden_1571 Jonesia denitrificans DSM 20603 metallophosphoesterase YP_003161522.1 1693792 R 471856 CDS YP_003161523.1 256832796 8380741 1696034..1697500 1 NC_013174.1 KEGG: gdi:GDI2161 malate:quinone oxidoreductase; TIGRFAM: malate/quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; FAD dependent oxidoreductase; malate/quinone oxidoreductase 1697500 8380741 Jden_1572 Jonesia denitrificans DSM 20603 malate/quinone oxidoreductase YP_003161523.1 1696034 D 471856 CDS YP_003161524.1 256832797 8380742 1697555..1698550 1 NC_013174.1 PFAM: aldo/keto reductase; KEGG: rlt:Rleg2_1253 aldo/keto reductase; aldo/keto reductase 1698550 8380742 Jden_1573 Jonesia denitrificans DSM 20603 aldo/keto reductase YP_003161524.1 1697555 D 471856 CDS YP_003161525.1 256832798 8380743 complement(1698572..1699201) 1 NC_013174.1 PFAM: thymidine kinase; KEGG: lpp:lpp0690 thymidine kinase; thymidine kinase 1699201 8380743 Jden_1574 Jonesia denitrificans DSM 20603 thymidine kinase YP_003161525.1 1698572 R 471856 CDS YP_003161526.1 256832799 8380744 complement(1699201..1699836) 1 NC_013174.1 PFAM: protein of unknown function UPF0126; KEGG: rpi:Rpic_2523 protein of unknown function UPF0126; hypothetical protein 1699836 8380744 Jden_1575 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161526.1 1699201 R 471856 CDS YP_003161527.1 256832800 8380745 1700009..1700812 1 NC_013174.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bch:Bcen2424_2054 AraC family transcriptional regulator; AraC family transcriptional regulator 1700812 8380745 Jden_1576 Jonesia denitrificans DSM 20603 AraC family transcriptional regulator YP_003161527.1 1700009 D 471856 CDS YP_003161528.1 256832801 8380746 1700912..1701295 1 NC_013174.1 hypothetical protein 1701295 8380746 Jden_1577 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161528.1 1700912 D 471856 CDS YP_003161529.1 256832802 8380747 1701334..1702005 1 NC_013174.1 PFAM: phospholipase/Carboxylesterase; KEGG: pfo:Pfl01_2066 phospholipase/carboxylesterase; phospholipase/Carboxylesterase 1702005 8380747 Jden_1578 Jonesia denitrificans DSM 20603 phospholipase/Carboxylesterase YP_003161529.1 1701334 D 471856 CDS YP_003161530.1 256832803 8380748 complement(1701950..1702606) 1 NC_013174.1 KEGG: abo:ABO_0867 hypothetical protein; hypothetical protein 1702606 8380748 Jden_1579 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161530.1 1701950 R 471856 CDS YP_003161531.1 256832804 8380749 complement(1702643..1703677) 1 NC_013174.1 KEGG: amc:MADE_03345 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 1703677 8380749 Jden_1580 Jonesia denitrificans DSM 20603 adenosine deaminase YP_003161531.1 1702643 R 471856 CDS YP_003161532.1 256832805 8380750 complement(1703800..1704207) 1 NC_013174.1 KEGG: hch:HCH_01502 hypothetical protein; hypothetical protein 1704207 8380750 Jden_1581 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161532.1 1703800 R 471856 CDS YP_003161533.1 256832806 8380751 complement(1704204..1704986) 1 NC_013174.1 PFAM: putative esterase; KEGG: bac:BamMC406_5051 putative esterase; putative esterase 1704986 8380751 Jden_1582 Jonesia denitrificans DSM 20603 putative esterase YP_003161533.1 1704204 R 471856 CDS YP_003161534.1 256832807 8380752 1705152..1705979 1 NC_013174.1 KEGG: dvm:DvMF_2682 membrane-bound lytic murein transglycosylase B-like protein; membrane-bound lytic murein transglycosylase B-like protein 1705979 8380752 Jden_1583 Jonesia denitrificans DSM 20603 membrane-bound lytic murein transglycosylase B-like protein YP_003161534.1 1705152 D 471856 CDS YP_003161535.1 256832808 8380753 complement(1705993..1707891) 1 NC_013174.1 PFAM: glycoside hydrolase 15-related; KEGG: scl:sce1562 glycosyl hydrolase; glycoside hydrolase 15-related 1707891 8380753 Jden_1584 Jonesia denitrificans DSM 20603 glycoside hydrolase 15-related YP_003161535.1 1705993 R 471856 CDS YP_003161536.1 256832809 8380754 1708004..1709362 1 NC_013174.1 PFAM: glucose-6-phosphate dehydrogenase; KEGG: bvi:Bcep1808_0883 glucose-6-phosphate 1- dehydrogenase; glucose-6-phosphate dehydrogenase 1709362 8380754 Jden_1585 Jonesia denitrificans DSM 20603 glucose-6-phosphate dehydrogenase YP_003161536.1 1708004 D 471856 CDS YP_003161537.1 256832810 8380755 1709359..1709676 1 NC_013174.1 hypothetical protein 1709676 8380755 Jden_1586 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161537.1 1709359 D 471856 CDS YP_003161538.1 256832811 8380756 complement(1709905..1711854) 1 NC_013174.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pca:Pcar_2193 NADH oxidase; NADH:flavin oxidoreductase 1711854 8380756 Jden_1587 Jonesia denitrificans DSM 20603 NADH:flavin oxidoreductase YP_003161538.1 1709905 R 471856 CDS YP_003161539.1 256832812 8380757 1711886..1712104 1 NC_013174.1 hypothetical protein 1712104 8380757 Jden_1588 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161539.1 1711886 D 471856 CDS YP_003161540.1 256832813 8380758 1712156..1714588 1 NC_013174.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mch:Mchl_1283 phosphoketolase; Fructose-6-phosphate phosphoketolase 1714588 8380758 Jden_1589 Jonesia denitrificans DSM 20603 Fructose-6-phosphate phosphoketolase YP_003161540.1 1712156 D 471856 CDS YP_003161541.1 256832814 8380759 complement(1714668..1715528) 1 NC_013174.1 PFAM: protein of unknown function DUF81; KEGG: reh:H16_A3656 predicted permease; hypothetical protein 1715528 8380759 Jden_1590 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161541.1 1714668 R 471856 CDS YP_003161542.1 256832815 8380760 complement(1715528..1716469) 1 NC_013174.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1716469 8380760 Jden_1591 Jonesia denitrificans DSM 20603 polar amino acid ABC transporter inner membrane subunit YP_003161542.1 1715528 R 471856 CDS YP_003161543.1 256832816 8380761 complement(1716466..1717140) 1 NC_013174.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcy:Bcer98_0542 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1717140 8380761 Jden_1592 Jonesia denitrificans DSM 20603 polar amino acid ABC transporter inner membrane subunit YP_003161543.1 1716466 R 471856 CDS YP_003161544.1 256832817 8380762 complement(1717212..1718048) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bsu:BSU27440 glutamine ABC transporter (glutamine-binding protein); family 3 extracellular solute-binding protein 1718048 8380762 Jden_1593 Jonesia denitrificans DSM 20603 family 3 extracellular solute-binding protein YP_003161544.1 1717212 R 471856 CDS YP_003161545.1 256832818 8380763 complement(1718123..1718902) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_671 putative ATP-binding component of a transport system; ABC transporter 1718902 8380763 Jden_1594 Jonesia denitrificans DSM 20603 ABC transporter YP_003161545.1 1718123 R 471856 CDS YP_003161546.1 256832819 8380764 1719101..1719289 1 NC_013174.1 hypothetical protein 1719289 8380764 Jden_1595 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161546.1 1719101 D 471856 CDS YP_003161547.1 256832820 8380765 complement(1719251..1719463) 1 NC_013174.1 hypothetical protein 1719463 8380765 Jden_1596 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161547.1 1719251 R 471856 CDS YP_003161548.1 256832821 8380766 complement(1719460..1721313) 1 NC_013174.1 PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ank:AnaeK_3368 ferrous iron transport protein B; GTP-binding protein HSR1-related 1721313 8380766 Jden_1597 Jonesia denitrificans DSM 20603 GTP-binding protein HSR1-related YP_003161548.1 1719460 R 471856 CDS YP_003161549.1 256832822 8380767 complement(1721310..1721615) 1 NC_013174.1 PFAM: FeoA family protein; KEGG: ank:AnaeK_3367 FeoA family protein; FeoA family protein 1721615 8380767 Jden_1598 Jonesia denitrificans DSM 20603 FeoA family protein YP_003161549.1 1721310 R 471856 CDS YP_003161550.1 256832823 8380768 complement(1721599..1722981) 1 NC_013174.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sit:TM1040_2167 GntR family transcriptional regulator; GntR family transcriptional regulator 1722981 8380768 Jden_1599 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003161550.1 1721599 R 471856 CDS YP_003161551.1 256832824 8380769 1723107..1724009 1 NC_013174.1 TIGRFAM: pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein; thiazole biosynthesis family protein; KEGG: pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein; pyridoxine biosynthesis protein 1724009 8380769 Jden_1600 Jonesia denitrificans DSM 20603 pyridoxine biosynthesis protein YP_003161551.1 1723107 D 471856 CDS YP_003161552.1 256832825 8380770 1724006..1724602 1 NC_013174.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dds:Ddes_1897 SNO glutamine amidotransferase; SNO glutamine amidotransferase 1724602 8380770 Jden_1601 Jonesia denitrificans DSM 20603 SNO glutamine amidotransferase YP_003161552.1 1724006 D 471856 CDS YP_003161553.1 256832826 8380771 complement(1724683..1725363) 1 NC_013174.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family 1725363 8380771 Jden_1602 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003161553.1 1724683 R 471856 CDS YP_003161554.1 256832827 8380772 complement(1725360..1726772) 1 NC_013174.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase dimerisation and phosphoacceptor region 1726772 8380772 Jden_1603 Jonesia denitrificans DSM 20603 histidine kinase dimerisation and phosphoacceptor region YP_003161554.1 1725360 R 471856 CDS YP_003161555.1 256832828 8380773 1726910..1727635 1 NC_013174.1 KEGG: bha:BH3064 hypothetical protein; hypothetical protein 1727635 8380773 Jden_1604 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161555.1 1726910 D 471856 CDS YP_003161556.1 256832829 8380774 1727748..1728191 1 NC_013174.1 SMART: Rhodanese domain protein; KEGG: dvm:DvMF_2623 rhodanese domain protein; rhodanese domain-containing protein 1728191 8380774 Jden_1605 Jonesia denitrificans DSM 20603 rhodanese domain-containing protein YP_003161556.1 1727748 D 471856 CDS YP_003161557.1 256832830 8380775 complement(1728242..1730755) 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: pca:Pcar_0429 uncharacterized NAD(FAD)- dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1730755 8380775 Jden_1606 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003161557.1 1728242 R 471856 CDS YP_003161558.1 256832831 8380776 1730928..1731869 1 NC_013174.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: mlo:mll5357 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 1731869 8380776 Jden_1607 Jonesia denitrificans DSM 20603 3-demethylubiquinone-9 3-methyltransferase YP_003161558.1 1730928 D 471856 CDS YP_003161559.1 256832832 8380777 1731912..1733024 1 NC_013174.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: bcy:Bcer98_3299 alanine dehydrogenase; alanine dehydrogenase 1733024 8380777 Jden_1608 Jonesia denitrificans DSM 20603 alanine dehydrogenase YP_003161559.1 1731912 D 471856 CDS YP_003161560.1 256832833 8380778 complement(1733075..1733965) 1 NC_013174.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mxa:MXAN_2251 glycine betaine/L-proline ABC transporter,periplasmic substrate-binding protein; glycine/betaine ABC transporter substrate-binding protein 1733965 8380778 Jden_1609 Jonesia denitrificans DSM 20603 glycine/betaine ABC transporter substrate-binding protein YP_003161560.1 1733075 R 471856 CDS YP_003161561.1 256832834 8380779 complement(1734049..1734936) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0486 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1734936 8380779 Jden_1610 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161561.1 1734049 R 471856 CDS YP_003161562.1 256832835 8380780 complement(1734933..1736204) 1 NC_013174.1 KEGG: mxa:MXAN_2249 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1736204 8380780 Jden_1611 Jonesia denitrificans DSM 20603 glycine betaine/L-proline ABC transporter ATPase YP_003161562.1 1734933 R 471856 CDS YP_003161563.1 256832836 8380781 complement(1736735..1738906) 1 NC_013174.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: bcb:BCB4264_A3632 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein 1738906 8380781 Jden_1612 Jonesia denitrificans DSM 20603 LPXTG-motif cell wall anchor domain-containing protein YP_003161563.1 1736735 R 471856 CDS YP_003161564.1 256832837 8380782 complement(1739062..1739349) 1 NC_013174.1 KEGG: smt:Smal_2108 hypothetical protein; hypothetical protein 1739349 8380782 Jden_1613 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161564.1 1739062 R 471856 CDS YP_003161565.1 256832838 8380783 complement(1739359..1740597) 1 NC_013174.1 KEGG: smt:Smal_2107 hypothetical protein; hypothetical protein 1740597 8380783 Jden_1614 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161565.1 1739359 R 471856 CDS YP_003161566.1 256832839 8380784 complement(1740758..1741999) 1 NC_013174.1 KEGG: smt:Smal_2106 hypothetical protein; hypothetical protein 1741999 8380784 Jden_1615 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161566.1 1740758 R 471856 CDS YP_003161567.1 256832840 8380785 1742188..1743129 1 NC_013174.1 PFAM: protein of unknown function DUF808; KEGG: csa:Csal_0752 protein of unknown function DUF808; hypothetical protein 1743129 8380785 Jden_1616 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161567.1 1742188 D 471856 CDS YP_003161568.1 256832841 8380786 complement(1743074..1744471) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bph:Bphy_5798 major facilitator transporter; major facilitator superfamily protein 1744471 8380786 Jden_1617 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161568.1 1743074 R 471856 CDS YP_003161569.1 256832842 8380787 complement(1744617..1745297) 1 NC_013174.1 KEGG: noc:Noc_0498 hypothetical protein; hypothetical protein 1745297 8380787 Jden_1618 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161569.1 1744617 R 471856 CDS YP_003161570.1 256832843 8380788 complement(1745435..1746262) 1 NC_013174.1 hypothetical protein 1746262 8380788 Jden_1619 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161570.1 1745435 R 471856 CDS YP_003161571.1 256832844 8380789 complement(1746259..1746879) 1 NC_013174.1 hypothetical protein 1746879 8380789 Jden_1620 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161571.1 1746259 R 471856 CDS YP_003161572.1 256832845 8380790 complement(1746952..1747506) 1 NC_013174.1 PFAM: Phosphoglycerate mutase; KEGG: bxe:Bxe_A0613 phosphoglycerate mutase; phosphoglycerate mutase 1747506 8380790 Jden_1621 Jonesia denitrificans DSM 20603 phosphoglycerate mutase YP_003161572.1 1746952 R 471856 CDS YP_003161573.1 256832846 8380791 1747801..1749912 1 NC_013174.1 PFAM: glycoside hydrolase family 43; SMART: LamG domain protein jellyroll fold domain protein; KEGG: bha:BH1878 hypothetical protein; glycoside hydrolase family protein 1749912 8380791 Jden_1622 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003161573.1 1747801 D 471856 CDS YP_003161574.1 256832847 8380792 1750208..1752622 1 NC_013174.1 PFAM: glycoside hydrolase family 43; SMART: LamG domain protein jellyroll fold domain protein; KEGG: bha:BH1878 hypothetical protein; glycoside hydrolase family protein 1752622 8380792 Jden_1623 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003161574.1 1750208 D 471856 CDS YP_003161575.1 256832848 8380793 complement(1752777..1753673) 1 NC_013174.1 KEGG: bps:BPSL2556 DNA polymerase/helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 1753673 8380793 Jden_1624 Jonesia denitrificans DSM 20603 DNA polymerase III subunit epsilon YP_003161575.1 1752777 R 471856 CDS YP_003161576.1 256832849 8380794 1753726..1754262 1 NC_013174.1 KEGG: bcj:BCAS0321a hypothetical protein; hypothetical protein 1754262 8380794 Jden_1625 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161576.1 1753726 D 471856 CDS YP_003161577.1 256832850 8380795 1754262..1755725 1 NC_013174.1 KEGG: bcj:BCAS0321a hypothetical protein; hypothetical protein 1755725 8380795 Jden_1626 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161577.1 1754262 D 471856 CDS YP_003161578.1 256832851 8380796 complement(1755701..1758349) 1 NC_013174.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: scl:sce2331 membrane alanyl aminopeptidase; aminopeptidase N 1758349 8380796 Jden_1627 Jonesia denitrificans DSM 20603 aminopeptidase N YP_003161578.1 1755701 R 471856 CDS YP_003161579.1 256832852 8380797 1758391..1758678 1 NC_013174.1 hypothetical protein 1758678 8380797 Jden_1628 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161579.1 1758391 D 471856 CDS YP_003161580.1 256832853 8380798 complement(1758696..1759514) 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: psb:Psyr_2563 HAD family hydrolase; HAD-superfamily hydrolase 1759514 8380798 Jden_1629 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003161580.1 1758696 R 471856 CDS YP_003161581.1 256832854 8380799 complement(1759804..1760508) 1 NC_013174.1 hypothetical protein 1760508 8380799 Jden_1630 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161581.1 1759804 R 471856 CDS YP_003161582.1 256832855 8380800 complement(1760798..1761835) 1 NC_013174.1 PFAM: restriction endonuclease; KEGG: rec:RHECIAT_CH0000870 probable restriction endonuclease protein; restriction endonuclease 1761835 8380800 Jden_1631 Jonesia denitrificans DSM 20603 restriction endonuclease YP_003161582.1 1760798 R 471856 CDS YP_003161583.1 256832856 8380801 complement(1761841..1762215) 1 NC_013174.1 PFAM: protein of unknown function DUF1696; KEGG: mes:Meso_1246 protein of unknown function DUF1696; hypothetical protein 1762215 8380801 Jden_1632 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161583.1 1761841 R 471856 CDS YP_003161584.1 256832857 8380802 1762325..1762687 1 NC_013174.1 PFAM: protein of unknown function DUF952; KEGG: rpb:RPB_4623 hypothetical protein; hypothetical protein 1762687 8380802 Jden_1633 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161584.1 1762325 D 471856 CDS YP_003161585.1 256832858 8380803 1762837..1764741 1 NC_013174.1 SMART: AAA ATPase; KEGG: ppw:PputW619_0678 ATP/GTP-binding protein, putative; ATPase AAA 1764741 8380803 Jden_1634 Jonesia denitrificans DSM 20603 ATPase AAA YP_003161585.1 1762837 D 471856 CDS YP_003161586.1 256832859 8381792 complement(1765102..1765623) 1 NC_013174.1 hypothetical protein 1765623 8381792 Jden_1635 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161586.1 1765102 R 471856 CDS YP_003161587.1 256832860 8380805 1765883..1767148 1 NC_013174.1 PFAM: peptidase M18 aminopeptidase I; KEGG: mxa:MXAN_2382 putative aminopeptidase 2; aspartyl aminopeptidase 1767148 8380805 Jden_1636 Jonesia denitrificans DSM 20603 aspartyl aminopeptidase YP_003161587.1 1765883 D 471856 CDS YP_003161588.1 256832861 8380806 1767334..1767990 1 NC_013174.1 KEGG: sea:SeAg_B4282 putative cytoplasmic protein; hypothetical protein 1767990 8380806 Jden_1637 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161588.1 1767334 D 471856 CDS YP_003161589.1 256832862 8380807 1768022..1768825 1 NC_013174.1 hypothetical protein 1768825 8380807 Jden_1638 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161589.1 1768022 D 471856 CDS YP_003161590.1 256832863 8380808 1768973..1769614 1 NC_013174.1 KEGG: sew:SeSA_A4253 hypothetical protein; hypothetical protein 1769614 8380808 Jden_1639 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161590.1 1768973 D 471856 CDS YP_003161591.1 256832864 8380809 complement(1769759..1770436) 1 NC_013174.1 PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A0330 phosphoglycerate mutase; phosphoglycerate mutase 1770436 8380809 Jden_1640 Jonesia denitrificans DSM 20603 phosphoglycerate mutase YP_003161591.1 1769759 R 471856 CDS YP_003161592.1 256832865 8380810 complement(1770446..1770871) 1 NC_013174.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bha:BH1328 hypothetical protein; iojap family protein 1770871 8380810 Jden_1641 Jonesia denitrificans DSM 20603 iojap family protein YP_003161592.1 1770446 R 471856 CDS YP_003161593.1 256832866 8380811 complement(1770910..1772328) 1 NC_013174.1 KEGG: mno:Mnod_1486 OmpA/MotB domain protein; hypothetical protein 1772328 8380811 Jden_1642 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161593.1 1770910 R 471856 CDS YP_003161594.1 256832867 8380812 complement(1772332..1772940) 1 NC_013174.1 KEGG: bsu:BSU25640 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1772940 8380812 Jden_1643 Jonesia denitrificans DSM 20603 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003161594.1 1772332 R 471856 CDS YP_003161595.1 256832868 8380813 complement(1772976..1773146) 1 NC_013174.1 hypothetical protein 1773146 8380813 Jden_1644 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161595.1 1772976 R 471856 CDS YP_003161596.1 256832869 8380814 complement(1773392..1774687) 1 NC_013174.1 KEGG: gbm:Gbem_3778 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase 1774687 8380814 Jden_1645 Jonesia denitrificans DSM 20603 gamma-glutamyl phosphate reductase YP_003161596.1 1773392 R 471856 CDS YP_003161597.1 256832870 8380815 complement(1774698..1776293) 1 NC_013174.1 KEGG: dal:Dalk_0154 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 1776293 8380815 Jden_1646 Jonesia denitrificans DSM 20603 pyridoxal-dependent decarboxylase YP_003161597.1 1774698 R 471856 CDS YP_003161598.1 256832871 8380816 complement(1776290..1777777) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: rce:RC1_2030 major facilitator superfamily transport protein; major facilitator superfamily protein 1777777 8380816 Jden_1647 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161598.1 1776290 R 471856 CDS YP_003161599.1 256832872 8380817 complement(1777913..1781353) 1 NC_013174.1 KEGG: sus:Acid_4394 endo-1,4-beta-xylanase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: glycoside hydrolase family 10; Carbohydrate- binding CenC domain protein; Carbohydrate-binding family 9; SMART: glycoside hydrolase family 10; LPXTG-motif cell wall anchor domain-containing protein 1781353 8380817 Jden_1648 Jonesia denitrificans DSM 20603 LPXTG-motif cell wall anchor domain-containing protein YP_003161599.1 1777913 R 471856 CDS YP_003161600.1 256832873 8380818 complement(1781619..1782800) 1 NC_013174.1 KEGG: mxa:MXAN_1357 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; glutamate 5-kinase 1782800 8380818 Jden_1649 Jonesia denitrificans DSM 20603 glutamate 5-kinase YP_003161600.1 1781619 R 471856 CDS YP_003161601.1 256832874 8380819 complement(1782869..1784398) 1 NC_013174.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: gsu:GSU3213 GTPase ObgE; GTP-binding protein Obg/CgtA 1784398 8380819 Jden_1650 Jonesia denitrificans DSM 20603 GTP-binding protein Obg/CgtA YP_003161601.1 1782869 R 471856 CDS YP_003161602.1 256832875 8380820 complement(1784495..1784749) 1 NC_013174.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: mca:MCA2247 50S ribosomal protein L27; 50S ribosomal protein L27 1784749 8380820 Jden_1651 Jonesia denitrificans DSM 20603 50S ribosomal protein L27 YP_003161602.1 1784495 R 471856 CDS YP_003161603.1 256832876 8380821 complement(1784821..1785129) 1 NC_013174.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: aeh:Mlg_0845 50S ribosomal protein L21P; 50S ribosomal protein L21 1785129 8380821 Jden_1652 Jonesia denitrificans DSM 20603 50S ribosomal protein L21 YP_003161603.1 1784821 R 471856 CDS YP_003161604.1 256832877 8380822 complement(1785456..1788512) 1 NC_013174.1 TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: gsu:GSU3239 ribonuclease G; ribonuclease, Rne/Rng family 1788512 8380822 Jden_1653 Jonesia denitrificans DSM 20603 ribonuclease, Rne/Rng family YP_003161604.1 1785456 R 471856 CDS YP_003161605.1 256832878 8380823 1789126..1790616 1 NC_013174.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bsu:BSU38760 cytochrome bd ubiquinol oxidase (subunit I); cytochrome bd ubiquinol oxidase subunit I 1790616 8380823 Jden_1654 Jonesia denitrificans DSM 20603 cytochrome bd ubiquinol oxidase subunit I YP_003161605.1 1789126 D 471856 CDS YP_003161606.1 256832879 8380824 1790638..1791705 1 NC_013174.1 KEGG: bcr:BCAH187_A2043 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 1791705 8380824 Jden_1655 Jonesia denitrificans DSM 20603 cytochrome d ubiquinol oxidase, subunit II YP_003161606.1 1790638 D 471856 CDS YP_003161607.1 256832880 8380825 1791715..1793400 1 NC_013174.1 KEGG: acr:Acry_1637 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 1793400 8380825 Jden_1656 Jonesia denitrificans DSM 20603 cysteine ABC transporter ATP-binding protein/permease YP_003161607.1 1791715 D 471856 CDS YP_003161608.1 256832881 8380826 1793397..1795178 1 NC_013174.1 KEGG: gme:Gmet_2633 ABC transporter-related protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 1795178 8380826 Jden_1657 Jonesia denitrificans DSM 20603 cysteine ABC transporter ATP-binding protein/permease YP_003161608.1 1793397 D 471856 CDS YP_003161609.1 256832882 8380827 1795220..1796449 1 NC_013174.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; KEGG: reh:H16_A1985 signal transduction histidine kinase containing PAS/PAC sensor domain; GAF sensor signal transduction histidine kinase 1796449 8380827 Jden_1658 Jonesia denitrificans DSM 20603 GAF sensor signal transduction histidine kinase YP_003161609.1 1795220 D 471856 CDS YP_003161610.1 256832883 8380828 complement(1796459..1797082) 1 NC_013174.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bsu:BSU33080 hypothetical protein; two component transcriptional regulator, LuxR family 1797082 8380828 Jden_1659 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003161610.1 1796459 R 471856 CDS YP_003161611.1 256832884 8380829 1797228..1798196 1 NC_013174.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hypothetical protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1798196 8380829 Jden_1660 Jonesia denitrificans DSM 20603 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_003161611.1 1797228 D 471856 CDS YP_003161612.1 256832885 8381793 complement(1798338..1798592) 1 NC_013174.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: ppd:Ppro_2447 addiction module antitoxin; Txe/YoeB family addiction module toxin 1798592 8381793 Jden_1662 Jonesia denitrificans DSM 20603 Txe/YoeB family addiction module toxin YP_003161612.1 1798338 R 471856 CDS YP_003161613.1 256832886 8380831 complement(1798593..1798871) 1 NC_013174.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sbc:SbBS512_E1214 antitoxin YefM; prevent-host-death family protein 1798871 8380831 Jden_1663 Jonesia denitrificans DSM 20603 prevent-host-death family protein YP_003161613.1 1798593 R 471856 CDS YP_003161614.1 256832887 8380832 1799135..1799686 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1868 hypothetical protein; N-acetyltransferase GCN5 1799686 8380832 Jden_1664 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161614.1 1799135 D 471856 CDS YP_003161615.1 256832888 8380833 complement(1799697..1800626) 1 NC_013174.1 KEGG: mms:mma_3124 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 1800626 8380833 Jden_1665 Jonesia denitrificans DSM 20603 formamidopyrimidine-DNA glycosylase YP_003161615.1 1799697 R 471856 CDS YP_003161616.1 256832889 8380834 complement(1800633..1801358) 1 NC_013174.1 KEGG: ppd:Ppro_1778 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 1801358 8380834 Jden_1666 Jonesia denitrificans DSM 20603 ribonuclease III YP_003161616.1 1800633 R 471856 CDS YP_003161617.1 256832890 8380835 complement(1801396..1801590) 1 NC_013174.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; 50S ribosomal protein L32 1801590 8380835 Jden_1667 Jonesia denitrificans DSM 20603 50S ribosomal protein L32 YP_003161617.1 1801396 R 471856 CDS YP_003161618.1 256832891 8380836 complement(1801593..1802123) 1 NC_013174.1 PFAM: protein of unknown function DUF177; KEGG: pca:Pcar_1433 hypothetical protein; hypothetical protein 1802123 8380836 Jden_1668 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161618.1 1801593 R 471856 CDS YP_003161619.1 256832892 8380837 complement(1802194..1802289) 1 NC_013174.1 hypothetical protein 1802289 8380837 Jden_1669 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161619.1 1802194 R 471856 CDS YP_003161620.1 256832893 8380838 complement(1802291..1802803) 1 NC_013174.1 KEGG: acp:A2cp1_0147 methyltransferase type 11; hypothetical protein 1802803 8380838 Jden_1670 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161620.1 1802291 R 471856 CDS YP_003161621.1 256832894 8380839 complement(1802873..1803355) 1 NC_013174.1 KEGG: scl:sce1714 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1803355 8380839 Jden_1671 Jonesia denitrificans DSM 20603 pantetheine-phosphate adenylyltransferase YP_003161621.1 1802873 R 471856 CDS YP_003161622.1 256832895 8380840 1803429..1804154 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1804154 8380840 Jden_1672 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161622.1 1803429 D 471856 CDS YP_003161623.1 256832896 8380841 complement(1804139..1804714) 1 NC_013174.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: pzu:PHZ_c3166 N6-adenine-specific methylase; methyltransferase 1804714 8380841 Jden_1673 Jonesia denitrificans DSM 20603 methyltransferase YP_003161623.1 1804139 R 471856 CDS YP_003161624.1 256832897 8380842 complement(1804732..1806984) 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein; KEGG: ret:RHE_CH02093 ATP-dependent DNA helicase protein; DEAD/DEAH box helicase 1806984 8380842 Jden_1674 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003161624.1 1804732 R 471856 CDS YP_003161625.1 256832898 8380843 complement(1807002..1808540) 1 NC_013174.1 PFAM: Dak phosphatase; KEGG: bha:BH2498 hypothetical protein; Dak phosphatase 1808540 8380843 Jden_1675 Jonesia denitrificans DSM 20603 Dak phosphatase YP_003161625.1 1807002 R 471856 CDS YP_003161626.1 256832899 8380844 1808926..1809117 1 NC_013174.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aba:Acid345_0165 LSU ribosomal protein L28P; 50S ribosomal protein L28 1809117 8380844 Jden_1676 Jonesia denitrificans DSM 20603 50S ribosomal protein L28 YP_003161626.1 1808926 D 471856 CDS YP_003161627.1 256832900 8380845 1809275..1809790 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce2328 putative acetyltransferase; N-acetyltransferase GCN5 1809790 8380845 Jden_1677 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161627.1 1809275 D 471856 CDS YP_003161628.1 256832901 8380846 complement(1809759..1810826) 1 NC_013174.1 KEGG: pca:Pcar_0028 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 1810826 8380846 Jden_1678 Jonesia denitrificans DSM 20603 thiamine-monophosphate kinase YP_003161628.1 1809759 R 471856 CDS YP_003161629.1 256832902 8380847 1810874..1811347 1 NC_013174.1 hypothetical protein 1811347 8380847 Jden_1679 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161629.1 1810874 D 471856 CDS YP_003161630.1 256832903 8380848 complement(1811396..1812565) 1 NC_013174.1 KEGG: aba:Acid345_4592 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; D-alanine--D-alanine ligase 1812565 8380848 Jden_1680 Jonesia denitrificans DSM 20603 D-alanine--D-alanine ligase YP_003161630.1 1811396 R 471856 CDS YP_003161631.1 256832904 8380849 1812665..1813867 1 NC_013174.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: dsh:Dshi_1002 cystathionine gamma-synthase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 1813867 8380849 Jden_1681 Jonesia denitrificans DSM 20603 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003161631.1 1812665 D 471856 CDS YP_003161632.1 256832905 8380850 complement(1813836..1814867) 1 NC_013174.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dvu:DVU3159 glycerol-3-phosphate dehydrogenase (NAD(P)+); glycerol-3-phosphate dehydrogenase 1814867 8380850 Jden_1682 Jonesia denitrificans DSM 20603 glycerol-3-phosphate dehydrogenase YP_003161632.1 1813836 R 471856 CDS YP_003161633.1 256832906 8380851 complement(1814864..1815643) 1 NC_013174.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ade:Adeh_0255 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase 1815643 8380851 Jden_1683 Jonesia denitrificans DSM 20603 phospholipid/glycerol acyltransferase YP_003161633.1 1814864 R 471856 CDS YP_003161634.1 256832907 8380852 complement(1815659..1816978) 1 NC_013174.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: bha:BH3749 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; UDP-N-acetylglucosamine 1- carboxyvinyltransferase 1816978 8380852 Jden_1684 Jonesia denitrificans DSM 20603 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003161634.1 1815659 R 471856 CDS YP_003161635.1 256832908 8381794 1819414..1820154 1 NC_013174.1 PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: cti:RALTA_B1874 putative transcriptional regulator, IclR; transcriptional regulator, IclR family 1820154 8381794 Jden_1686 Jonesia denitrificans DSM 20603 transcriptional regulator, IclR family YP_003161635.1 1819414 D 471856 CDS YP_003161636.1 256832909 8381797 complement(1820918..1821664) 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bha:BH0473 hypothetical protein; HAD-superfamily hydrolase 1821664 8381797 Jden_1687 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003161636.1 1820918 R 471856 CDS YP_003161637.1 256832910 8380855 complement(1821661..1823178) 1 NC_013174.1 KEGG: bsu:BSU00920 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; glutamyl-tRNA synthetase 1823178 8380855 Jden_1688 Jonesia denitrificans DSM 20603 glutamyl-tRNA synthetase YP_003161637.1 1821661 R 471856 CDS YP_003161638.1 256832911 8380856 complement(1823227..1824012) 1 NC_013174.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce2870 fumarylacetoacetase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1824012 8380856 Jden_1689 Jonesia denitrificans DSM 20603 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003161638.1 1823227 R 471856 CDS YP_003161639.1 256832912 8380857 complement(1824056..1824913) 1 NC_013174.1 PFAM: Methyltransferase type 11; methyltransferase small; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: ubiE/COQ5 methyltransferase; type 11 methyltransferase 1824913 8380857 Jden_1690 Jonesia denitrificans DSM 20603 type 11 methyltransferase YP_003161639.1 1824056 R 471856 CDS YP_003161640.1 256832913 8380858 1825154..1826164 1 NC_013174.1 PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase; aldo/keto reductase 1826164 8380858 Jden_1691 Jonesia denitrificans DSM 20603 aldo/keto reductase YP_003161640.1 1825154 D 471856 CDS YP_003161641.1 256832914 8380859 1826167..1827102 1 NC_013174.1 hypothetical protein 1827102 8380859 Jden_1692 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161641.1 1826167 D 471856 CDS YP_003161642.1 256832915 8380860 1827092..1827946 1 NC_013174.1 hypothetical protein 1827946 8380860 Jden_1693 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161642.1 1827092 D 471856 CDS YP_003161643.1 256832916 8380861 complement(1828009..1829490) 1 NC_013174.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cvi:CV_3650 sodium/alanine symporter; amino acid carrier protein 1829490 8380861 Jden_1694 Jonesia denitrificans DSM 20603 amino acid carrier protein YP_003161643.1 1828009 R 471856 CDS YP_003161644.1 256832917 8380862 1829586..1832207 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce4364 putative ATP-dependent helicase; DEAD/DEAH box helicase 1832207 8380862 Jden_1695 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003161644.1 1829586 D 471856 CDS YP_003161645.1 256832918 8380863 1832207..1832713 1 NC_013174.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_01964 hypothetical protein; ybaK/ebsC protein 1832713 8380863 Jden_1696 Jonesia denitrificans DSM 20603 ybaK/ebsC protein YP_003161645.1 1832207 D 471856 CDS YP_003161646.1 256832919 8380864 complement(1832676..1833254) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3593 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 1833254 8380864 Jden_1697 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161646.1 1832676 R 471856 CDS YP_003161647.1 256832920 8380865 complement(1833276..1833656) 1 NC_013174.1 PFAM: protein of unknown function DUF307; KEGG: rce:RC1_3378 hypothetical protein; hypothetical protein 1833656 8380865 Jden_1698 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161647.1 1833276 R 471856 CDS YP_003161648.1 256832921 8380866 1833771..1834532 1 NC_013174.1 PFAM: alanine racemase domain protein; KEGG: azo:azo3467 hypothetical protein; alanine racemase domain-containing protein 1834532 8380866 Jden_1699 Jonesia denitrificans DSM 20603 alanine racemase domain-containing protein YP_003161648.1 1833771 D 471856 CDS YP_003161649.1 256832922 8380867 1834543..1835409 1 NC_013174.1 hypothetical protein 1835409 8380867 Jden_1700 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161649.1 1834543 D 471856 CDS YP_003161650.1 256832923 8380868 complement(1835437..1836486) 1 NC_013174.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: ilo:IL0300 lipoate-protein ligase A; biotin/lipoate A/B protein ligase 1836486 8380868 Jden_1701 Jonesia denitrificans DSM 20603 biotin/lipoate A/B protein ligase YP_003161650.1 1835437 R 471856 CDS YP_003161651.1 256832924 8380869 complement(1836569..1838209) 1 NC_013174.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: scl:sce3734 putative alpha- isopropylmalate/homocitrate synthase family transferase; 2-isopropylmalate synthase 1838209 8380869 Jden_1702 Jonesia denitrificans DSM 20603 2-isopropylmalate synthase YP_003161651.1 1836569 R 471856 CDS YP_003161652.1 256832925 8380870 complement(1838473..1839600) 1 NC_013174.1 KEGG: sml:Smlt0860 putative branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 1839600 8380870 Jden_1703 Jonesia denitrificans DSM 20603 branched-chain amino acid aminotransferase YP_003161652.1 1838473 R 471856 CDS YP_003161653.1 256832926 8380871 complement(1839736..1840782) 1 NC_013174.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sfu:Sfum_3031 isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1840782 8380871 Jden_1704 Jonesia denitrificans DSM 20603 3-isopropylmalate dehydrogenase YP_003161653.1 1839736 R 471856 CDS YP_003161654.1 256832927 8380872 1841058..1841768 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_0682 ABC transporter related; ABC transporter 1841768 8380872 Jden_1705 Jonesia denitrificans DSM 20603 ABC transporter YP_003161654.1 1841058 D 471856 CDS YP_003161655.1 256832928 8380873 1841765..1843039 1 NC_013174.1 hypothetical protein 1843039 8380873 Jden_1706 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161655.1 1841765 D 471856 CDS YP_003161656.1 256832929 8380874 1843036..1843638 1 NC_013174.1 hypothetical protein 1843638 8380874 Jden_1707 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161656.1 1843036 D 471856 CDS YP_003161657.1 256832930 8380875 complement(1843698..1844735) 1 NC_013174.1 KEGG: afw:Anae109_1879 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; CoA-binding domain protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 1844735 8380875 Jden_1708 Jonesia denitrificans DSM 20603 ketol-acid reductoisomerase YP_003161657.1 1843698 R 471856 CDS YP_003161658.1 256832931 8380876 complement(1844779..1845306) 1 NC_013174.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: glo:Glov_2502 acetolactate synthase, small subunit; acetolactate synthase small subunit 1845306 8380876 Jden_1709 Jonesia denitrificans DSM 20603 acetolactate synthase small subunit YP_003161658.1 1844779 R 471856 CDS YP_003161659.1 256832932 8380877 complement(1845324..1847171) 1 NC_013174.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: ade:Adeh_1978 acetolactate synthase, large subunit; acetolactate synthase large subunit 1847171 8380877 Jden_1710 Jonesia denitrificans DSM 20603 acetolactate synthase large subunit YP_003161659.1 1845324 R 471856 CDS YP_003161660.1 256832933 8380878 complement(1847515..1849230) 1 NC_013174.1 KEGG: mca:MCA2082 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1849230 8380878 Jden_1711 Jonesia denitrificans DSM 20603 dihydroxy-acid dehydratase YP_003161660.1 1847515 R 471856 CDS YP_003161661.1 256832934 8380879 complement(1849277..1849849) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC3473 aminoglycoside N6'- acetyltransferase; N-acetyltransferase GCN5 1849849 8380879 Jden_1712 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161661.1 1849277 R 471856 CDS YP_003161662.1 256832935 8380880 complement(1849852..1851357) 1 NC_013174.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: sus:Acid_7720 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B 1851357 8380880 Jden_1713 Jonesia denitrificans DSM 20603 glutamyl-tRNA(Gln) amidotransferase subunit B YP_003161662.1 1849852 R 471856 CDS YP_003161663.1 256832936 8380881 complement(1851354..1852868) 1 NC_013174.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: mxa:MXAN_1463 glutamyl-tRNA(Gln) amidotransferase, A subunit; glutamyl-tRNA(Gln) amidotransferase subunit A 1852868 8380881 Jden_1714 Jonesia denitrificans DSM 20603 glutamyl-tRNA(Gln) amidotransferase subunit A YP_003161663.1 1851354 R 471856 CDS YP_003161664.1 256832937 8380882 complement(1852870..1853166) 1 NC_013174.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: gsu:GSU3383 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 1853166 8380882 Jden_1715 Jonesia denitrificans DSM 20603 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003161664.1 1852870 R 471856 CDS YP_003161665.1 256832938 8381801 complement(1858983..1861379) 1 NC_013174.1 KEGG: bac:BamMC406_1926 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase; BRCT domain protein; NAD-dependent DNA ligase 1861379 8381801 Jden_1716 Jonesia denitrificans DSM 20603 NAD-dependent DNA ligase YP_003161665.1 1858983 R 471856 CDS YP_003161666.1 256832939 8380884 1861446..1863581 1 NC_013174.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sml:Smlt4084 putative exported oligopeptidase; prolyl oligopeptidase 1863581 8380884 Jden_1717 Jonesia denitrificans DSM 20603 prolyl oligopeptidase YP_003161666.1 1861446 D 471856 CDS YP_003161667.1 256832940 8380885 1863578..1864006 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1864006 8380885 Jden_1718 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003161667.1 1863578 D 471856 CDS YP_003161668.1 256832941 8380886 complement(1864046..1865389) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: lpc:LPC_1067 drug:proton antiporter; major facilitator superfamily protein 1865389 8380886 Jden_1719 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161668.1 1864046 R 471856 CDS YP_003161669.1 256832942 8380887 complement(1865393..1866451) 1 NC_013174.1 hypothetical protein 1866451 8380887 Jden_1720 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161669.1 1865393 R 471856 CDS YP_003161670.1 256832943 8380888 complement(1866448..1867719) 1 NC_013174.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; KEGG: mxa:MXAN_3499 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase 1867719 8380888 Jden_1721 Jonesia denitrificans DSM 20603 tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003161670.1 1866448 R 471856 CDS YP_003161671.1 256832944 8380889 complement(1867772..1869010) 1 NC_013174.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A1068 aminotransferase, class V; class V aminotransferase 1869010 8380889 Jden_1722 Jonesia denitrificans DSM 20603 class V aminotransferase YP_003161671.1 1867772 R 471856 CDS YP_003161672.1 256832945 8380890 1869130..1870278 1 NC_013174.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase; acyl-CoA dehydrogenase type 2 domain-containing protein 1870278 8380890 Jden_1723 Jonesia denitrificans DSM 20603 acyl-CoA dehydrogenase type 2 domain-containing protein YP_003161672.1 1869130 D 471856 CDS YP_003161673.1 256832946 8380891 complement(1870420..1871412) 1 NC_013174.1 PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: afw:Anae109_3165 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 1871412 8380891 Jden_1724 Jonesia denitrificans DSM 20603 electron transfer flavoprotein subunit alpha YP_003161673.1 1870420 R 471856 CDS YP_003161674.1 256832947 8380892 complement(1871423..1872229) 1 NC_013174.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit; Electron transfer flavoprotein alpha/beta- subunit 1872229 8380892 Jden_1725 Jonesia denitrificans DSM 20603 Electron transfer flavoprotein alpha/beta- subunit YP_003161674.1 1871423 R 471856 CDS YP_003161675.1 256832948 8380893 1872333..1874579 1 NC_013174.1 KEGG: eba:ebA6923 glycogen operon protein GlgX (alpha amylase); TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1874579 8380893 Jden_1726 Jonesia denitrificans DSM 20603 glycogen debranching protein GlgX YP_003161675.1 1872333 D 471856 CDS YP_003161676.1 256832949 8380894 1874621..1876738 1 NC_013174.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: psa:PST_2154 alpha-amylase family protein; alpha amylase 1876738 8380894 Jden_1727 Jonesia denitrificans DSM 20603 alpha amylase YP_003161676.1 1874621 D 471856 CDS YP_003161677.1 256832950 8380895 1876735..1878492 1 NC_013174.1 KEGG: afw:Anae109_2968 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 1878492 8380895 Jden_1728 Jonesia denitrificans DSM 20603 trehalose synthase YP_003161677.1 1876735 D 471856 CDS YP_003161678.1 256832951 8380896 1878520..1880745 1 NC_013174.1 KEGG: mxa:MXAN_3682 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 1880745 8380896 Jden_1729 Jonesia denitrificans DSM 20603 1,4-alpha-glucan-branching protein YP_003161678.1 1878520 D 471856 CDS YP_003161679.1 256832952 8380897 complement(1880829..1881770) 1 NC_013174.1 KEGG: rle:RL4571 putative thioredoxin; putative thioredoxin domain-containing protein 1881770 8380897 Jden_1730 Jonesia denitrificans DSM 20603 putative thioredoxin domain-containing protein YP_003161679.1 1880829 R 471856 CDS YP_003161680.1 256832953 8381802 complement(1882853..1884571) 1 NC_013174.1 KEGG: proteophosphoglycan ppg4; hypothetical protein 1884571 8381802 Jden_1732 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161680.1 1882853 R 471856 CDS YP_003161681.1 256832954 8380899 1884923..1887376 1 NC_013174.1 KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family; hypothetical protein 1887376 8380899 Jden_1733 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161681.1 1884923 D 471856 CDS YP_003161682.1 256832955 8380900 1887373..1887801 1 NC_013174.1 hypothetical protein 1887801 8380900 Jden_1734 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161682.1 1887373 D 471856 CDS YP_003161683.1 256832956 8380901 complement(1887798..1888583) 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: ade:Adeh_3847 alpha/beta hydrolase fold protein-1; alpha/beta hydrolase fold protein 1888583 8380901 Jden_1735 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003161683.1 1887798 R 471856 CDS YP_003161684.1 256832957 8380902 complement(1888611..1888901) 1 NC_013174.1 hypothetical protein 1888901 8380902 Jden_1736 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161684.1 1888611 R 471856 CDS YP_003161685.1 256832958 8380903 1889011..1889988 1 NC_013174.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: csa:Csal_3141 peptidylprolyl isomerase, FKBP- type; FKBP-type peptidylprolyl isomerase 1889988 8380903 Jden_1737 Jonesia denitrificans DSM 20603 FKBP-type peptidylprolyl isomerase YP_003161685.1 1889011 D 471856 CDS YP_003161686.1 256832959 8380904 1890073..1890582 1 NC_013174.1 PFAM: phosphoribosyltransferase; KEGG: afw:Anae109_4149 phosphoribosyltransferase; phosphoribosyltransferase 1890582 8380904 Jden_1738 Jonesia denitrificans DSM 20603 phosphoribosyltransferase YP_003161686.1 1890073 D 471856 CDS YP_003161687.1 256832960 8380905 1890614..1891405 1 NC_013174.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dar:Daro_1740 methionine aminopeptidase; methionine aminopeptidase 1891405 8380905 Jden_1739 Jonesia denitrificans DSM 20603 methionine aminopeptidase YP_003161687.1 1890614 D 471856 CDS YP_003161688.1 256832961 8380906 complement(1891539..1891739) 1 NC_013174.1 hypothetical protein 1891739 8380906 Jden_1740 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161688.1 1891539 R 471856 CDS YP_003161689.1 256832962 8380907 complement(1891838..1892527) 1 NC_013174.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: pde:Pden_1253 protein of unknown function DUF125, transmembrane; hypothetical protein 1892527 8380907 Jden_1741 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161689.1 1891838 R 471856 CDS YP_003161690.1 256832963 8380908 1892634..1892987 1 NC_013174.1 hypothetical protein 1892987 8380908 Jden_1742 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161690.1 1892634 D 471856 CDS YP_003161691.1 256832964 8380909 1893059..1893634 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 1893634 8380909 Jden_1743 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003161691.1 1893059 D 471856 CDS YP_003161692.1 256832965 8380910 1893748..1894890 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: bcb:BCB4264_A3244 putative ABC transporter, permease protein; hypothetical protein 1894890 8380910 Jden_1744 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161692.1 1893748 D 471856 CDS YP_003161693.1 256832966 8380911 1894887..1895576 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2944 ABC transporter, ATP-binding protein; ABC transporter 1895576 8380911 Jden_1745 Jonesia denitrificans DSM 20603 ABC transporter YP_003161693.1 1894887 D 471856 CDS YP_003161694.1 256832967 8380912 complement(1895588..1896160) 1 NC_013174.1 hypothetical protein 1896160 8380912 Jden_1746 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161694.1 1895588 R 471856 CDS YP_003161695.1 256832968 8380913 complement(1896157..1896294) 1 NC_013174.1 hypothetical protein 1896294 8380913 Jden_1747 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161695.1 1896157 R 471856 CDS YP_003161696.1 256832969 8380914 complement(1896701..1899736) 1 NC_013174.1 PFAM: SMC domain protein; KEGG: neu:NE2310 ABC transporter; SMC domain-containing protein 1899736 8380914 Jden_1748 Jonesia denitrificans DSM 20603 SMC domain-containing protein YP_003161696.1 1896701 R 471856 CDS YP_003161697.1 256832970 8381804 complement(1903379..1904356) 1 NC_013174.1 PFAM: ribonucleotide reductase; KEGG: rlt:Rleg2_3497 ribonucleoside-diphosphate reductase; ribonucleoside-diphosphate reductase 1904356 8381804 Jden_1751 Jonesia denitrificans DSM 20603 ribonucleoside-diphosphate reductase YP_003161697.1 1903379 R 471856 CDS YP_003161698.1 256832971 8380916 complement(1904374..1906491) 1 NC_013174.1 KEGG: atc:AGR_C_106 ribonucleoside-diphosphate reductase alpha chain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 1906491 8380916 Jden_1752 Jonesia denitrificans DSM 20603 ribonucleoside-diphosphate reductase subunit alpha YP_003161698.1 1904374 R 471856 CDS YP_003161699.1 256832972 8380917 complement(1906607..1906849) 1 NC_013174.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein; glutaredoxin-like protein NrdH 1906849 8380917 Jden_1753 Jonesia denitrificans DSM 20603 glutaredoxin-like protein NrdH YP_003161699.1 1906607 R 471856 CDS YP_003161700.1 256832973 8380918 complement(1907380..1908837) 1 NC_013174.1 KEGG: hch:HCH_06907 beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase 1908837 8380918 Jden_1754 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003161700.1 1907380 R 471856 CDS YP_003161701.1 256832974 8380919 complement(1908997..1909884) 1 NC_013174.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce0662 LacI family transcription regulator; periplasmic binding protein/LacI transcriptional regulator 1909884 8380919 Jden_1755 Jonesia denitrificans DSM 20603 periplasmic binding protein/LacI transcriptional regulator YP_003161701.1 1908997 R 471856 CDS YP_003161702.1 256832975 8380920 complement(1909979..1912621) 1 NC_013174.1 KEGG: manB1; beta-mannosidase protein; K01192 beta-mannosidase; Beta-mannosidase 1912621 8380920 Jden_1756 Jonesia denitrificans DSM 20603 Beta-mannosidase YP_003161702.1 1909979 R 471856 CDS YP_003161703.1 256832976 8380921 complement(1912751..1913572) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1731 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1913572 8380921 Jden_1757 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161703.1 1912751 R 471856 CDS YP_003161704.1 256832977 8380922 complement(1913569..1914543) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1100 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1914543 8380922 Jden_1758 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161704.1 1913569 R 471856 CDS YP_003161705.1 256832978 8380923 complement(1914685..1915995) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: cja:CJA_3468 bacterial extracellular solute- binding protein; extracellular solute-binding protein 1915995 8380923 Jden_1759 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003161705.1 1914685 R 471856 CDS YP_003161706.1 256832979 8380924 1916228..1917505 1 NC_013174.1 PFAM: ROK family protein; KEGG: bid:Bind_3295 ROK family protein; ROK family protein 1917505 8380924 Jden_1760 Jonesia denitrificans DSM 20603 ROK family protein YP_003161706.1 1916228 D 471856 CDS YP_003161707.1 256832980 8380925 1917584..1918558 1 NC_013174.1 PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase; Acetyl xylan esterase 1918558 8380925 Jden_1761 Jonesia denitrificans DSM 20603 Acetyl xylan esterase YP_003161707.1 1917584 D 471856 CDS YP_003161708.1 256832981 8380926 1918568..1919824 1 NC_013174.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: ppw:PputW619_4210 N-acylglucosamine 2- epimerase; N-acylglucosamine 2-epimerase 1919824 8380926 Jden_1762 Jonesia denitrificans DSM 20603 N-acylglucosamine 2-epimerase YP_003161708.1 1918568 D 471856 CDS YP_003161709.1 256832982 8380927 complement(1919857..1922139) 1 NC_013174.1 PFAM: glycoside hydrolase family 31; KEGG: bha:BH1905 alpha-xylosidase YicI; glycoside hydrolase family protein 1922139 8380927 Jden_1763 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003161709.1 1919857 R 471856 CDS YP_003161710.1 256832983 8380928 complement(1922152..1924212) 1 NC_013174.1 PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 1924212 8380928 Jden_1764 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003161710.1 1922152 R 471856 CDS YP_003161711.1 256832984 8380929 1924389..1926848 1 NC_013174.1 KEGG: bha:BH0842 hypothetical protein; hypothetical protein 1926848 8380929 Jden_1765 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161711.1 1924389 D 471856 CDS YP_003161712.1 256832985 8380930 1926835..1927857 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: bvi:Bcep1808_3829 LacI family transcription regulator; transcriptional regulator, LacI family 1927857 8380930 Jden_1766 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003161712.1 1926835 D 471856 CDS YP_003161713.1 256832986 8380931 complement(1927958..1928965) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30170 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1928965 8380931 Jden_1767 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161713.1 1927958 R 471856 CDS YP_003161714.1 256832987 8380932 complement(1928968..1929930) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0484 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein 1929930 8380932 Jden_1768 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161714.1 1928968 R 471856 CDS YP_003161715.1 256832988 8380933 complement(1930019..1931701) 1 NC_013174.1 KEGG: bsu:BSU07100 lipoprotein; hypothetical protein 1931701 8380933 Jden_1769 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161715.1 1930019 R 471856 CDS YP_003161716.1 256832989 8380934 1932036..1934885 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase; Beta-glucosidase 1934885 8380934 Jden_1770 Jonesia denitrificans DSM 20603 Beta-glucosidase YP_003161716.1 1932036 D 471856 CDS YP_003161717.1 256832990 8380935 complement(1935086..1935781) 1 NC_013174.1 PFAM: protein of unknown function DUF91; KEGG: acr:Acry_0699 RecB family-like nuclease; hypothetical protein 1935781 8380935 Jden_1771 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161717.1 1935086 R 471856 CDS YP_003161718.1 256832991 8380936 complement(1935802..1936242) 1 NC_013174.1 hypothetical protein 1936242 8380936 Jden_1772 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161718.1 1935802 R 471856 CDS YP_003161719.1 256832992 8380937 complement(1936259..1936537) 1 NC_013174.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: abo:ABO_2725 ATP synthase, epsilon subunit; H+transporting two-sector ATPase aubunit delta/epsilon 1936537 8380937 Jden_1773 Jonesia denitrificans DSM 20603 H+transporting two-sector ATPase aubunit delta/epsilon YP_003161719.1 1936259 R 471856 CDS YP_003161720.1 256832993 8380938 complement(1936581..1938062) 1 NC_013174.1 KEGG: bcy:Bcer98_3825 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta 1938062 8380938 Jden_1774 Jonesia denitrificans DSM 20603 ATP synthase F1 subunit beta YP_003161720.1 1936581 R 471856 CDS YP_003161721.1 256832994 8380939 complement(1938155..1939054) 1 NC_013174.1 KEGG: hch:HCH_07072 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 1939054 8380939 Jden_1775 Jonesia denitrificans DSM 20603 ATP synthase F1 subunit gamma YP_003161721.1 1938155 R 471856 CDS YP_003161722.1 256832995 8380940 complement(1939058..1940689) 1 NC_013174.1 KEGG: eli:ELI_08770 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 1940689 8380940 Jden_1776 Jonesia denitrificans DSM 20603 ATP synthase F1 subunit alpha YP_003161722.1 1939058 R 471856 CDS YP_003161723.1 256832996 8380941 complement(1940776..1941591) 1 NC_013174.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: xau:Xaut_2077 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 1941591 8380941 Jden_1777 Jonesia denitrificans DSM 20603 ATP synthase F1 subunit delta YP_003161723.1 1940776 R 471856 CDS YP_003161724.1 256832997 8380942 complement(1941591..1942172) 1 NC_013174.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sgl:SG2410 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B 1942172 8380942 Jden_1778 Jonesia denitrificans DSM 20603 ATP synthase F0 subunit B YP_003161724.1 1941591 R 471856 CDS YP_003161725.1 256832998 8380943 complement(1942169..1942402) 1 NC_013174.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: bcb:BCB4264_A5432 ATP synthase F0, C subunit; ATP synthase F0 subunit C 1942402 8380943 Jden_1779 Jonesia denitrificans DSM 20603 ATP synthase F0 subunit C YP_003161725.1 1942169 R 471856 CDS YP_003161726.1 256832999 8380944 complement(1942558..1943403) 1 NC_013174.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: acr:Acry_0397 F0F1 ATP synthase subunit A; ATP synthase F0 subunit A 1943403 8380944 Jden_1780 Jonesia denitrificans DSM 20603 ATP synthase F0 subunit A YP_003161726.1 1942558 R 471856 CDS YP_003161727.1 256833000 8380945 complement(1943630..1944166) 1 NC_013174.1 hypothetical protein 1944166 8380945 Jden_1781 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161727.1 1943630 R 471856 CDS YP_003161728.1 256833001 8380946 complement(1944171..1945319) 1 NC_013174.1 PFAM: glycosyl transferase family 4; KEGG: scl:sce7324 glycosyltransferase; glycosyl transferase family protein 1945319 8380946 Jden_1782 Jonesia denitrificans DSM 20603 glycosyl transferase family protein YP_003161728.1 1944171 R 471856 CDS YP_003161729.1 256833002 8380947 complement(1945316..1946056) 1 NC_013174.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: eba:ebA110 putative translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein 1946056 8380947 Jden_1783 Jonesia denitrificans DSM 20603 Sua5/YciO/YrdC/YwlC family protein YP_003161729.1 1945316 R 471856 CDS YP_003161730.1 256833003 8380948 complement(1946060..1947016) 1 NC_013174.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: rce:RC1_2636 modification methylase,HemK family; HemK family modification methylase 1947016 8380948 Jden_1784 Jonesia denitrificans DSM 20603 HemK family modification methylase YP_003161730.1 1946060 R 471856 CDS YP_003161731.1 256833004 8380949 complement(1947022..1948107) 1 NC_013174.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dvl:Dvul_0451 peptide chain release factor 1; peptide chain release factor 1 1948107 8380949 Jden_1785 Jonesia denitrificans DSM 20603 peptide chain release factor 1 YP_003161731.1 1947022 R 471856 CDS YP_003161732.1 256833005 8380950 complement(1948275..1948484) 1 NC_013174.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ppd:Ppro_2650 50S ribosomal protein L31; 50S ribosomal protein L31 1948484 8380950 Jden_1786 Jonesia denitrificans DSM 20603 50S ribosomal protein L31 YP_003161732.1 1948275 R 471856 CDS YP_003161733.1 256833006 8380951 complement(1948652..1950694) 1 NC_013174.1 KEGG: xca:xccb100_3960 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho 1950694 8380951 Jden_1787 Jonesia denitrificans DSM 20603 transcription termination factor Rho YP_003161733.1 1948652 R 471856 CDS YP_003161734.1 256833007 8380952 complement(1950953..1951906) 1 NC_013174.1 KEGG: predicted protein; K00872 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; homoserine kinase 1951906 8380952 Jden_1788 Jonesia denitrificans DSM 20603 homoserine kinase YP_003161734.1 1950953 R 471856 CDS YP_003161735.1 256833008 8380953 complement(1951913..1952983) 1 NC_013174.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bha:BH3421 threonine synthase; threonine synthase 1952983 8380953 Jden_1789 Jonesia denitrificans DSM 20603 threonine synthase YP_003161735.1 1951913 R 471856 CDS YP_003161736.1 256833009 8380954 complement(1952983..1954284) 1 NC_013174.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase; Homoserine dehydrogenase 1954284 8380954 Jden_1790 Jonesia denitrificans DSM 20603 Homoserine dehydrogenase YP_003161736.1 1952983 R 471856 CDS YP_003161737.1 256833010 8380955 1954378..1954866 1 NC_013174.1 hypothetical protein 1954866 8380955 Jden_1791 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161737.1 1954378 D 471856 CDS YP_003161738.1 256833011 8380956 complement(1954953..1956332) 1 NC_013174.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bsu:BSU23380 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1956332 8380956 Jden_1792 Jonesia denitrificans DSM 20603 diaminopimelate decarboxylase YP_003161738.1 1954953 R 471856 CDS YP_003161739.1 256833012 8380957 complement(1956338..1958014) 1 NC_013174.1 KEGG: csa:Csal_0602 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 1958014 8380957 Jden_1793 Jonesia denitrificans DSM 20603 arginyl-tRNA synthetase YP_003161739.1 1956338 R 471856 CDS YP_003161740.1 256833013 8380958 1958174..1958848 1 NC_013174.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: psa:PST_2058 probable transcriptional regulator; GntR family transcriptional regulator 1958848 8380958 Jden_1794 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003161740.1 1958174 D 471856 CDS YP_003161741.1 256833014 8381805 1959131..1960291 1 NC_013174.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ppr:PBPRA2712 teichoic acid biosynthesis protein F; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1960291 8381805 Jden_1795 Jonesia denitrificans DSM 20603 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_003161741.1 1959131 D 471856 CDS YP_003161742.1 256833015 8380960 1960291..1961409 1 NC_013174.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bsu:BSU35760 polyglycerol phosphate assembly/export protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1961409 8380960 Jden_1796 Jonesia denitrificans DSM 20603 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_003161742.1 1960291 D 471856 CDS YP_003161743.1 256833016 8380961 complement(1961406..1961969) 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcm:Bcenmc03_1482 MarR family transcriptional regulator; transcriptional regulator, MarR family 1961969 8380961 Jden_1797 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003161743.1 1961406 R 471856 CDS YP_003161744.1 256833017 8380962 1962269..1965031 1 NC_013174.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: msu:MS2190 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1965031 8380962 Jden_1798 Jonesia denitrificans DSM 20603 iron-containing alcohol dehydrogenase YP_003161744.1 1962269 D 471856 CDS YP_003161745.1 256833018 8380963 complement(1965227..1966903) 1 NC_013174.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: proteophosphoglycan 5; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 1966903 8380963 Jden_1799 Jonesia denitrificans DSM 20603 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_003161745.1 1965227 R 471856 CDS YP_003161746.1 256833019 8380964 complement(1967110..1967895) 1 NC_013174.1 PFAM: CBS domain containing protein; KEGG: cak:Caul_0024 CBS domain-containing protein; hypothetical protein 1967895 8380964 Jden_1800 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161746.1 1967110 R 471856 CDS YP_003161747.1 256833020 8380965 complement(1967892..1968911) 1 NC_013174.1 PFAM: CBS domain containing protein; transporter- associated region; KEGG: aeh:Mlg_0397 CBS domain-containing protein; hypothetical protein 1968911 8380965 Jden_1801 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161747.1 1967892 R 471856 CDS YP_003161748.1 256833021 8380966 1969139..1969837 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ppd:Ppro_3155 two component transcriptional regulator; two component transcriptional regulator, winged helix family 1969837 8380966 Jden_1802 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003161748.1 1969139 D 471856 CDS YP_003161749.1 256833022 8380967 1969896..1970978 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ppd:Ppro_2227 integral membrane sensor signal transduction histidine kinase; histidine kinase 1970978 8380967 Jden_1803 Jonesia denitrificans DSM 20603 histidine kinase YP_003161749.1 1969896 D 471856 CDS YP_003161750.1 256833023 8380968 1970988..1971905 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0445 ABC transporter ATP-binding protein; ABC transporter 1971905 8380968 Jden_1804 Jonesia denitrificans DSM 20603 ABC transporter YP_003161750.1 1970988 D 471856 CDS YP_003161751.1 256833024 8380969 1971905..1972714 1 NC_013174.1 hypothetical protein 1972714 8380969 Jden_1805 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161751.1 1971905 D 471856 CDS YP_003161752.1 256833025 8380970 1973055..1976831 1 NC_013174.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; KEGG: sus:Acid_5307 alpha-ketoglutarate decarboxylase; 2-oxoglutarate dehydrogenase, E1 subunit 1976831 8380970 Jden_1806 Jonesia denitrificans DSM 20603 2-oxoglutarate dehydrogenase, E1 subunit YP_003161752.1 1973055 D 471856 CDS YP_003161753.1 256833026 8380971 1976934..1977536 1 NC_013174.1 KEGG: mgm:Mmc1_3233 hypothetical protein; hypothetical protein 1977536 8380971 Jden_1807 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161753.1 1976934 D 471856 CDS YP_003161754.1 256833027 8380972 complement(1977631..1978929) 1 NC_013174.1 KEGG: aba:Acid345_0704 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1978929 8380972 Jden_1808 Jonesia denitrificans DSM 20603 twitching motility protein YP_003161754.1 1977631 R 471856 CDS YP_003161755.1 256833028 8380973 complement(1979031..1979306) 1 NC_013174.1 TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor; anti-sigma factor 1979306 8380973 Jden_1809 Jonesia denitrificans DSM 20603 anti-sigma factor YP_003161755.1 1979031 R 471856 CDS YP_003161756.1 256833029 8380974 complement(1979303..1980055) 1 NC_013174.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1980055 8380974 Jden_1810 Jonesia denitrificans DSM 20603 ECF subfamily RNA polymerase sigma-24 subunit YP_003161756.1 1979303 R 471856 CDS YP_003161757.1 256833030 8380975 1980179..1980664 1 NC_013174.1 hypothetical protein 1980664 8380975 Jden_1811 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161757.1 1980179 D 471856 CDS YP_003161758.1 256833031 8380976 1980725..1982065 1 NC_013174.1 TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: rlt:Rleg2_0533 3-phosphoshikimate 1- carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 1982065 8380976 Jden_1812 Jonesia denitrificans DSM 20603 3-phosphoshikimate 1-carboxyvinyltransferase YP_003161758.1 1980725 D 471856 CDS YP_003161759.1 256833032 8380977 1982094..1983194 1 NC_013174.1 PFAM: GTPase EngC; KEGG: pag:PLES_53381 putative GTPase; GTPase EngC 1983194 8380977 Jden_1813 Jonesia denitrificans DSM 20603 GTPase EngC YP_003161759.1 1982094 D 471856 CDS YP_003161760.1 256833033 8380978 1983221..1984018 1 NC_013174.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: ade:Adeh_1287 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase 1984018 8380978 Jden_1814 Jonesia denitrificans DSM 20603 histidinol-phosphate phosphatase YP_003161760.1 1983221 D 471856 CDS YP_003161761.1 256833034 8380979 complement(1984051..1984536) 1 NC_013174.1 hypothetical protein 1984536 8380979 Jden_1815 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161761.1 1984051 R 471856 CDS YP_003161762.1 256833035 8380980 complement(1984555..1985943) 1 NC_013174.1 KEGG: sme:SMa1573 CpaE2 pilus assembly protein; hypothetical protein 1985943 8380980 Jden_1816 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161762.1 1984555 R 471856 CDS YP_003161763.1 256833036 8380981 complement(1985940..1986665) 1 NC_013174.1 PFAM: SAF domain protein; SAF domain-containing protein 1986665 8380981 Jden_1817 Jonesia denitrificans DSM 20603 SAF domain-containing protein YP_003161763.1 1985940 R 471856 CDS YP_003161764.1 256833037 8380982 1986802..1987017 1 NC_013174.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: nwi:Nwi_0271 excisionase/Xis, DNA-binding; DNA binding domain-containing protein 1987017 8380982 Jden_1818 Jonesia denitrificans DSM 20603 DNA binding domain-containing protein YP_003161764.1 1986802 D 471856 CDS YP_003161765.1 256833038 8380983 complement(1987044..1987622) 1 NC_013174.1 hypothetical protein 1987622 8380983 Jden_1819 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161765.1 1987044 R 471856 CDS YP_003161766.1 256833039 8380984 1987777..1988664 1 NC_013174.1 KEGG: similar to mucin 17; hypothetical protein 1988664 8380984 Jden_1820 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161766.1 1987777 D 471856 CDS YP_003161767.1 256833040 8380985 1988749..1989201 1 NC_013174.1 hypothetical protein 1989201 8380985 Jden_1821 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161767.1 1988749 D 471856 CDS YP_003161768.1 256833041 8380986 complement(1989283..1992003) 1 NC_013174.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; helicase domain protein; KEGG: glo:Glov_2490 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA 1992003 8380986 Jden_1822 Jonesia denitrificans DSM 20603 Preprotein translocase subunit SecA YP_003161768.1 1989283 R 471856 CDS YP_003161769.1 256833042 8380987 complement(1992272..1992931) 1 NC_013174.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bcy:Bcer98_3727 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 1992931 8380987 Jden_1823 Jonesia denitrificans DSM 20603 sigma 54 modulation protein/30S ribosomal protein S30EA YP_003161769.1 1992272 R 471856 CDS YP_003161770.1 256833043 8380988 complement(1993078..1993845) 1 NC_013174.1 KEGG: pca:Pcar_2573 amidophosphoribosyltransferase; amidophosphoribosyltransferase-like protein 1993845 8380988 Jden_1824 Jonesia denitrificans DSM 20603 amidophosphoribosyltransferase-like protein YP_003161770.1 1993078 R 471856 CDS YP_003161771.1 256833044 8380989 complement(1993984..1995735) 1 NC_013174.1 hypothetical protein 1995735 8380989 Jden_1825 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161771.1 1993984 R 471856 CDS YP_003161772.1 256833045 8380990 complement(1995728..1997404) 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ank:AnaeK_1664 integral membrane sensor hybrid histidine kinase; histidine kinase 1997404 8380990 Jden_1826 Jonesia denitrificans DSM 20603 histidine kinase YP_003161772.1 1995728 R 471856 CDS YP_003161773.1 256833046 8380991 complement(1997407..1998090) 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_4006 two component transcriptional regulator; two component transcriptional regulator, winged helix family 1998090 8380991 Jden_1827 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003161773.1 1997407 R 471856 CDS YP_003161774.1 256833047 8380992 complement(1998095..1998226) 1 NC_013174.1 hypothetical protein 1998226 8380992 Jden_1828 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161774.1 1998095 R 471856 CDS YP_003161775.1 256833048 8380993 1998297..1999541 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 1999541 8380993 Jden_1829 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161775.1 1998297 D 471856 CDS YP_003161776.1 256833049 8380994 1999538..2000179 1 NC_013174.1 KEGG: bha:BH0729 hypothetical protein; hypothetical protein 2000179 8380994 Jden_1830 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161776.1 1999538 D 471856 CDS YP_003161777.1 256833050 8380995 2000176..2001363 1 NC_013174.1 KEGG: WSC4; ER membrane protein involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; may also have a role in the stress response; hypothetical protein 2001363 8380995 Jden_1831 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161777.1 2000176 D 471856 CDS YP_003161778.1 256833051 8380996 2001353..2002336 1 NC_013174.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bra:BRADO4262 hypothetical protein; ATPase 2002336 8380996 Jden_1832 Jonesia denitrificans DSM 20603 ATPase YP_003161778.1 2001353 D 471856 CDS YP_003161779.1 256833052 8380997 2002351..2003643 1 NC_013174.1 PFAM: protein of unknown function DUF58; KEGG: sal:Sala_2966 hypothetical protein; hypothetical protein 2003643 8380997 Jden_1833 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161779.1 2002351 D 471856 CDS YP_003161780.1 256833053 8380998 2003640..2003828 1 NC_013174.1 hypothetical protein 2003828 8380998 Jden_1834 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161780.1 2003640 D 471856 CDS YP_003161781.1 256833054 8380999 complement(2003845..2004831) 1 NC_013174.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: mxa:MXAN_3115 hypothetical protein; hypothetical protein 2004831 8380999 Jden_1835 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161781.1 2003845 R 471856 CDS YP_003161782.1 256833055 8381000 2004927..2005733 1 NC_013174.1 PFAM: RDD domain containing protein; KEGG: mxa:MXAN_3116 RDD family protein; RDD domain-containing protein 2005733 8381000 Jden_1836 Jonesia denitrificans DSM 20603 RDD domain-containing protein YP_003161782.1 2004927 D 471856 CDS YP_003161783.1 256833056 8381001 complement(2005759..2007243) 1 NC_013174.1 KEGG: ade:Adeh_0156 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S- adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 2007243 8381001 Jden_1837 Jonesia denitrificans DSM 20603 adenosylhomocysteinase YP_003161783.1 2005759 R 471856 CDS YP_003161784.1 256833057 8381002 2007294..2009909 1 NC_013174.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: SH3 type 3 domain protein; KEGG: bha:BH3648 hypothetical protein; SpoIID/LytB domain-containing protein 2009909 8381002 Jden_1838 Jonesia denitrificans DSM 20603 SpoIID/LytB domain-containing protein YP_003161784.1 2007294 D 471856 CDS YP_003161785.1 256833058 8381003 2009928..2011643 1 NC_013174.1 PFAM: Endonuclease/exonuclease/phosphatase; Fibronectin type III domain protein; KEGG: gur:Gura_2022 fibronectin, type III domain- containing protein; endonuclease/exonuclease/phosphatase 2011643 8381003 Jden_1839 Jonesia denitrificans DSM 20603 endonuclease/exonuclease/phosphatase YP_003161785.1 2009928 D 471856 CDS YP_003161786.1 256833059 8381004 complement(2011666..2012967) 1 NC_013174.1 KEGG: pat:Patl_3209 hypothetical protein; hypothetical protein 2012967 8381004 Jden_1840 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161786.1 2011666 R 471856 CDS YP_003161787.1 256833060 8381005 complement(2013076..2013222) 1 NC_013174.1 hypothetical protein 2013222 8381005 Jden_1841 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161787.1 2013076 R 471856 CDS YP_003161788.1 256833061 8381006 2013258..2014709 1 NC_013174.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KR domain protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: zmo:ZMO0353 pyrophosphorylase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2014709 8381006 Jden_1842 Jonesia denitrificans DSM 20603 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003161788.1 2013258 D 471856 CDS YP_003161789.1 256833062 8381007 2014724..2016490 1 NC_013174.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cak:Caul_1690 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 2016490 8381007 Jden_1843 Jonesia denitrificans DSM 20603 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_003161789.1 2014724 D 471856 CDS YP_003161790.1 256833063 8381008 complement(2016512..2018257) 1 NC_013174.1 KEGG: apa:APP7_1639 putative CDP- glycerol:glycerophosphate; hypothetical protein 2018257 8381008 Jden_1844 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161790.1 2016512 R 471856 CDS YP_003161791.1 256833064 8381009 complement(2018254..2019120) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA2549 efflux ABC transporter, ATP- binding protein, putative; ABC transporter 2019120 8381009 Jden_1845 Jonesia denitrificans DSM 20603 ABC transporter YP_003161791.1 2018254 R 471856 CDS YP_003161792.1 256833065 8381010 complement(2019113..2019937) 1 NC_013174.1 PFAM: ABC-2 type transporter; KEGG: bha:BH3660 teichoic acid ABC transporter (permease); ABC transporter 2019937 8381010 Jden_1846 Jonesia denitrificans DSM 20603 ABC transporter YP_003161792.1 2019113 R 471856 CDS YP_003161793.1 256833066 8381011 complement(2020145..2023495) 1 NC_013174.1 PFAM: glycosyl transferase family 2; CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ppr:PBPRA2712 teichoic acid biosynthesis protein F; family 2 glycosyl transferase 2023495 8381011 Jden_1847 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003161793.1 2020145 R 471856 CDS YP_003161794.1 256833067 8381012 complement(2023598..2024884) 1 NC_013174.1 PFAM: CHAP domain containing protein; CHAP protein 2024884 8381012 Jden_1848 Jonesia denitrificans DSM 20603 CHAP protein YP_003161794.1 2023598 R 471856 CDS YP_003161795.1 256833068 8381013 complement(2024932..2026212) 1 NC_013174.1 PFAM: CHAP domain containing protein; KEGG: hypothetical protein; CHAP protein 2026212 8381013 Jden_1849 Jonesia denitrificans DSM 20603 CHAP protein YP_003161795.1 2024932 R 471856 CDS YP_003161796.1 256833069 8381014 2026338..2027453 1 NC_013174.1 PFAM: acyltransferase 3; KEGG: bsu:BSU13520 hypothetical protein; acyltransferase 3 2027453 8381014 Jden_1850 Jonesia denitrificans DSM 20603 acyltransferase 3 YP_003161796.1 2026338 D 471856 CDS YP_003161797.1 256833070 8381015 complement(2027463..2028122) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfuC; iron(III) ABC transporter; ABC transporter 2028122 8381015 Jden_1851 Jonesia denitrificans DSM 20603 ABC transporter YP_003161797.1 2027463 R 471856 CDS YP_003161798.1 256833071 8381016 complement(2028119..2028937) 1 NC_013174.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce1134 ABC-type molybdate transporter, permease protein; ABC transporter 2028937 8381016 Jden_1852 Jonesia denitrificans DSM 20603 ABC transporter YP_003161798.1 2028119 R 471856 CDS YP_003161799.1 256833072 8381017 complement(2028934..2029734) 1 NC_013174.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce1135 ABC-type molybdate transporter, substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2029734 8381017 Jden_1853 Jonesia denitrificans DSM 20603 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003161799.1 2028934 R 471856 CDS YP_003161800.1 256833073 8381018 complement(2029737..2030138) 1 NC_013174.1 PFAM: TOBE domain protein; regulatory protein MerR; KEGG: aba:Acid345_1548 molybdenum-pterin binding protein; TOBE domain-containing protein 2030138 8381018 Jden_1854 Jonesia denitrificans DSM 20603 TOBE domain-containing protein YP_003161800.1 2029737 R 471856 CDS YP_003161801.1 256833074 8381019 complement(2030266..2030457) 1 NC_013174.1 PFAM: protein of unknown function DUF343; KEGG: pau:PA14_25520 hypothetical protein; hypothetical protein 2030457 8381019 Jden_1855 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161801.1 2030266 R 471856 CDS YP_003161802.1 256833075 8381020 complement(2030511..2032019) 1 NC_013174.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase 2032019 8381020 Jden_1856 Jonesia denitrificans DSM 20603 phosphomannomutase YP_003161802.1 2030511 R 471856 CDS YP_003161803.1 256833076 8381021 complement(2032065..2032829) 1 NC_013174.1 KEGG: mxa:MXAN_1353 hypothetical protein; hypothetical protein 2032829 8381021 Jden_1857 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161803.1 2032065 R 471856 CDS YP_003161804.1 256833077 8381022 2033027..2033392 1 NC_013174.1 hypothetical protein 2033392 8381022 Jden_1858 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161804.1 2033027 D 471856 CDS YP_003161805.1 256833078 8381023 complement(2033406..2035277) 1 NC_013174.1 KEGG: dal:Dalk_2295 Hemagluttinin repeat-containing protein; hypothetical protein 2035277 8381023 Jden_1859 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161805.1 2033406 R 471856 CDS YP_003161806.1 256833079 8381024 complement(2035277..2038855) 1 NC_013174.1 KEGG: sus:Acid_6302 glycosyl transferase family protein; glycosyltransferase-like protein 2038855 8381024 Jden_1860 Jonesia denitrificans DSM 20603 glycosyltransferase-like protein YP_003161806.1 2035277 R 471856 CDS YP_003161807.1 256833080 8381025 complement(2038956..2039285) 1 NC_013174.1 PFAM: transcription factor WhiB; transcription factor WhiB 2039285 8381025 Jden_1861 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003161807.1 2038956 R 471856 CDS YP_003161808.1 256833081 8381026 2039546..2040313 1 NC_013174.1 hypothetical protein 2040313 8381026 Jden_1862 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161808.1 2039546 D 471856 CDS YP_003161809.1 256833082 8381027 complement(2040382..2041407) 1 NC_013174.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rru:Rru_B0050 dTDP-glucose 4,6-dehydratase; NAD-dependent epimerase/dehydratase 2041407 8381027 Jden_1863 Jonesia denitrificans DSM 20603 NAD-dependent epimerase/dehydratase YP_003161809.1 2040382 R 471856 CDS YP_003161810.1 256833083 8381028 2041528..2042703 1 NC_013174.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_1499 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 2042703 8381028 Jden_1864 Jonesia denitrificans DSM 20603 cell envelope-related transcriptional attenuator YP_003161810.1 2041528 D 471856 CDS YP_003161811.1 256833084 8381029 2042856..2044160 1 NC_013174.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 2044160 8381029 Jden_1865 Jonesia denitrificans DSM 20603 cell envelope-related transcriptional attenuator YP_003161811.1 2042856 D 471856 CDS YP_003161812.1 256833085 8381030 complement(2044165..2044683) 1 NC_013174.1 KEGG: hypothetical protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 2044683 8381030 Jden_1866 Jonesia denitrificans DSM 20603 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_003161812.1 2044165 R 471856 CDS YP_003161813.1 256833086 8381031 complement(2044680..2045873) 1 NC_013174.1 KEGG: pzu:PHZ_c3286 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 2045873 8381031 Jden_1867 Jonesia denitrificans DSM 20603 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_003161813.1 2044680 R 471856 CDS YP_003161814.1 256833087 8381032 complement(2045976..2046935) 1 NC_013174.1 KEGG: ppf:Pput_2757 hypothetical protein; triacylglycerol lipase 2046935 8381032 Jden_1868 Jonesia denitrificans DSM 20603 triacylglycerol lipase YP_003161814.1 2045976 R 471856 CDS YP_003161815.1 256833088 8381033 2047099..2047575 1 NC_013174.1 PFAM: GtrA family protein; KEGG: pol:Bpro_5438 GtrA-like protein; GtrA family protein 2047575 8381033 Jden_1869 Jonesia denitrificans DSM 20603 GtrA family protein YP_003161815.1 2047099 D 471856 CDS YP_003161816.1 256833089 8381034 complement(2047649..2049010) 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5327 periplasmic sensor signal transduction histidine kinase; histidine kinase 2049010 8381034 Jden_1870 Jonesia denitrificans DSM 20603 histidine kinase YP_003161816.1 2047649 R 471856 CDS YP_003161817.1 256833090 8381035 complement(2049070..2049750) 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aba:Acid345_3061 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family 2049750 8381035 Jden_1871 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003161817.1 2049070 R 471856 CDS YP_003161818.1 256833091 8381036 2049866..2051134 1 NC_013174.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase 2051134 8381036 Jden_1872 Jonesia denitrificans DSM 20603 histidine kinase YP_003161818.1 2049866 D 471856 CDS YP_003161819.1 256833092 8381037 2051145..2051846 1 NC_013174.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family 2051846 8381037 Jden_1873 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003161819.1 2051145 D 471856 CDS YP_003161820.1 256833093 8381038 2052039..2052815 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit; ABC transporter 2052815 8381038 Jden_1874 Jonesia denitrificans DSM 20603 ABC transporter YP_003161820.1 2052039 D 471856 CDS YP_003161821.1 256833094 8381039 2052829..2055465 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1312 hypothetical protein; hypothetical protein 2055465 8381039 Jden_1875 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161821.1 2052829 D 471856 CDS YP_003161822.1 256833095 8381040 complement(2055504..2055968) 1 NC_013174.1 KEGG: pap:PSPA7_2488 hypothetical protein; hypothetical protein 2055968 8381040 Jden_1876 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161822.1 2055504 R 471856 CDS YP_003161823.1 256833096 8381041 2056325..2056573 1 NC_013174.1 PFAM: transcription factor WhiB; transcription factor WhiB 2056573 8381041 Jden_1877 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003161823.1 2056325 D 471856 CDS YP_003161824.1 256833097 8381042 complement(2056682..2057737) 1 NC_013174.1 KEGG: aav:Aave_4199 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; transcriptional regulator, LacI family 2057737 8381042 Jden_1878 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003161824.1 2056682 R 471856 CDS YP_003161825.1 256833098 8381043 complement(2057794..2059260) 1 NC_013174.1 KEGG: scl:sce4297 Beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; beta-galactosidase 2059260 8381043 Jden_1879 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003161825.1 2057794 R 471856 CDS YP_003161826.1 256833099 8381044 complement(2059257..2060177) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1926 sugar transport system (permease); binding-protein-dependent transport system inner membrane protein 2060177 8381044 Jden_1880 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161826.1 2059257 R 471856 CDS YP_003161827.1 256833100 8381045 complement(2060174..2061178) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease); binding-protein-dependent transport system inner membrane protein 2061178 8381045 Jden_1881 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161827.1 2060174 R 471856 CDS YP_003161828.1 256833101 8381046 complement(2061346..2062686) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein); extracellular solute-binding protein 2062686 8381046 Jden_1882 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003161828.1 2061346 R 471856 CDS YP_003161829.1 256833102 8381047 complement(2063103..2063594) 1 NC_013174.1 hypothetical protein 2063594 8381047 Jden_1883 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161829.1 2063103 R 471856 CDS YP_003161830.1 256833103 8381048 2063662..2065116 1 NC_013174.1 PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_1419 signal transduction histidine kinase; signal transduction histidine kinase 2065116 8381048 Jden_1884 Jonesia denitrificans DSM 20603 signal transduction histidine kinase YP_003161830.1 2063662 D 471856 CDS YP_003161831.1 256833104 8381049 complement(2065196..2065921) 1 NC_013174.1 PFAM: Chlorite dismutase; KEGG: bsu:BSU37670 putative heme peroxidase; chlorite dismutase 2065921 8381049 Jden_1885 Jonesia denitrificans DSM 20603 chlorite dismutase YP_003161831.1 2065196 R 471856 CDS YP_003161832.1 256833105 8381050 complement(2065983..2067134) 1 NC_013174.1 PFAM: ferrochelatase; KEGG: sus:Acid_1029 ferrochelatase; ferrochelatase 2067134 8381050 Jden_1886 Jonesia denitrificans DSM 20603 ferrochelatase YP_003161832.1 2065983 R 471856 CDS YP_003161833.1 256833106 8381051 complement(2067272..2068051) 1 NC_013174.1 KEGG: acr:Acry_2740 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 2068051 8381051 Jden_1887 Jonesia denitrificans DSM 20603 UDP diphosphate synthase YP_003161833.1 2067272 R 471856 CDS YP_003161834.1 256833107 8381052 2068195..2069019 1 NC_013174.1 PFAM: Hly-III family protein; KEGG: afw:Anae109_1200 hemolysin III family channel protein; Hly-III family protein 2069019 8381052 Jden_1888 Jonesia denitrificans DSM 20603 Hly-III family protein YP_003161834.1 2068195 D 471856 CDS YP_003161835.1 256833108 8381053 complement(2069023..2069805) 1 NC_013174.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: kpe:KPK_3915 hydrolase, carbon-nitrogen family; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 2069805 8381053 Jden_1889 Jonesia denitrificans DSM 20603 Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase YP_003161835.1 2069023 R 471856 CDS YP_003161836.1 256833109 8381054 complement(2069802..2070176) 1 NC_013174.1 hypothetical protein 2070176 8381054 Jden_1890 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161836.1 2069802 R 471856 CDS YP_003161837.1 256833110 8381055 complement(2070188..2071063) 1 NC_013174.1 TIGRFAM: mycothiol conjugate amidase Mca; PFAM: LmbE family protein; KEGG: aba:Acid345_2880 LmbE-like protein; mycothiol conjugate amidase Mca 2071063 8381055 Jden_1891 Jonesia denitrificans DSM 20603 mycothiol conjugate amidase Mca YP_003161837.1 2070188 R 471856 CDS YP_003161838.1 256833111 8381056 2071156..2071671 1 NC_013174.1 hypothetical protein 2071671 8381056 Jden_1892 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161838.1 2071156 D 471856 CDS YP_003161839.1 256833112 8381057 2071923..2072405 1 NC_013174.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: lip:LI0307 transcription elongation factor GreA; transcription elongation factor GreA 2072405 8381057 Jden_1893 Jonesia denitrificans DSM 20603 transcription elongation factor GreA YP_003161839.1 2071923 D 471856 CDS YP_003161840.1 256833113 8381058 complement(2072493..2073719) 1 NC_013174.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gbm:Gbem_3689 threonine dehydratase; threonine dehydratase 2073719 8381058 Jden_1894 Jonesia denitrificans DSM 20603 threonine dehydratase YP_003161840.1 2072493 R 471856 CDS YP_003161841.1 256833114 8381059 complement(2073724..2075175) 1 NC_013174.1 PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_7270 hypothetical protein; hypothetical protein 2075175 8381059 Jden_1895 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161841.1 2073724 R 471856 CDS YP_003161842.1 256833115 8381060 2075324..2075995 1 NC_013174.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: mxa:MXAN_7060 methionine-S-sulfoxide reductase; peptide methionine sulfoxide reductase 2075995 8381060 Jden_1896 Jonesia denitrificans DSM 20603 peptide methionine sulfoxide reductase YP_003161842.1 2075324 D 471856 CDS YP_003161843.1 256833116 8381061 complement(2076048..2076857) 1 NC_013174.1 PFAM: LysR substrate-binding; KEGG: scl:sce1423 LysR family transcriptional regulator; LysR family transcriptional regulator 2076857 8381061 Jden_1897 Jonesia denitrificans DSM 20603 LysR family transcriptional regulator YP_003161843.1 2076048 R 471856 CDS YP_003161844.1 256833117 8381062 2076920..2077309 1 NC_013174.1 hypothetical protein 2077309 8381062 Jden_1898 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161844.1 2076920 D 471856 CDS YP_003161845.1 256833118 8381063 complement(2077392..2077796) 1 NC_013174.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: hypothetical protein; FKBP-type peptidylprolyl isomerase 2077796 8381063 Jden_1899 Jonesia denitrificans DSM 20603 FKBP-type peptidylprolyl isomerase YP_003161845.1 2077392 R 471856 CDS YP_003161846.1 256833119 8381064 complement(2077983..2078813) 1 NC_013174.1 PFAM: protein of unknown function DUF1112; KEGG: xfa:XF2760 hypothetical protein; hypothetical protein 2078813 8381064 Jden_1900 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161846.1 2077983 R 471856 CDS YP_003161847.1 256833120 8381065 complement(2078923..2079456) 1 NC_013174.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rce:RC1_2891 intracellular protease, PFpI family protein, putative; Pfpi family intracellular protease 2079456 8381065 Jden_1901 Jonesia denitrificans DSM 20603 Pfpi family intracellular protease YP_003161847.1 2078923 R 471856 CDS YP_003161848.1 256833121 8381066 2079733..2081961 1 NC_013174.1 PFAM: acyltransferase 3; KEGG: mes:Meso_0485 acyltransferase 3; acyltransferase 3 2081961 8381066 Jden_1902 Jonesia denitrificans DSM 20603 acyltransferase 3 YP_003161848.1 2079733 D 471856 CDS YP_003161849.1 256833122 8381067 complement(2081994..2083880) 1 NC_013174.1 KEGG: dal:Dalk_4101 hypothetical protein; hypothetical protein 2083880 8381067 Jden_1903 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161849.1 2081994 R 471856 CDS YP_003161850.1 256833123 8381068 complement(2083877..2084674) 1 NC_013174.1 KEGG: rde:RD1_3606 hypothetical protein; hypothetical protein 2084674 8381068 Jden_1904 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161850.1 2083877 R 471856 CDS YP_003161851.1 256833124 8381069 complement(2084671..2085243) 1 NC_013174.1 KEGG: pap:PSPA7_2550 hypothetical protein; hypothetical protein 2085243 8381069 Jden_1905 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161851.1 2084671 R 471856 CDS YP_003161852.1 256833125 8381070 complement(2085375..2086727) 1 NC_013174.1 hypothetical protein 2086727 8381070 Jden_1906 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161852.1 2085375 R 471856 CDS YP_003161853.1 256833126 8381071 complement(2086827..2088164) 1 NC_013174.1 KEGG: scl:sce8613 Mg2+ transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; magnesium transporter 2088164 8381071 Jden_1907 Jonesia denitrificans DSM 20603 magnesium transporter YP_003161853.1 2086827 R 471856 CDS YP_003161854.1 256833127 8381072 2088548..2089432 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2702 ABC transporter related; ABC transporter 2089432 8381072 Jden_1908 Jonesia denitrificans DSM 20603 ABC transporter YP_003161854.1 2088548 D 471856 CDS YP_003161855.1 256833128 8381073 2089473..2090480 1 NC_013174.1 PFAM: periplasmic binding protein; KEGG: bha:BH1037 iron (III) dicitrate transport system (permease); periplasmic binding protein 2090480 8381073 Jden_1909 Jonesia denitrificans DSM 20603 periplasmic binding protein YP_003161855.1 2089473 D 471856 CDS YP_003161856.1 256833129 8381074 2090531..2092645 1 NC_013174.1 PFAM: transport system permease protein; KEGG: bcb:BCB4264_A4637 iron compound ABC transporter, permease protein; transport system permease 2092645 8381074 Jden_1910 Jonesia denitrificans DSM 20603 transport system permease YP_003161856.1 2090531 D 471856 CDS YP_003161857.1 256833130 8381075 2092675..2093499 1 NC_013174.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: bur:Bcep18194_A5754 UbiE/COQ5 methyltransferase; type 12 methyltransferase 2093499 8381075 Jden_1911 Jonesia denitrificans DSM 20603 type 12 methyltransferase YP_003161857.1 2092675 D 471856 CDS YP_003161858.1 256833131 8381076 2093569..2093727 1 NC_013174.1 hypothetical protein 2093727 8381076 Jden_1912 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161858.1 2093569 D 471856 CDS YP_003161859.1 256833132 8381077 2093795..2096602 1 NC_013174.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: tmz:Tmz1t_1112 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2096602 8381077 Jden_1913 Jonesia denitrificans DSM 20603 NADH dehydrogenase (quinone) YP_003161859.1 2093795 D 471856 CDS YP_003161860.1 256833133 8381078 2096599..2096952 1 NC_013174.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: maq:Maqu_2857 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L 2096952 8381078 Jden_1914 Jonesia denitrificans DSM 20603 NADH-ubiquinone oxidoreductase chain 4L YP_003161860.1 2096599 D 471856 CDS YP_003161861.1 256833134 8381079 2096949..2098514 1 NC_013174.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: maq:Maqu_2858 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2098514 8381079 Jden_1915 Jonesia denitrificans DSM 20603 NADH dehydrogenase (quinone) YP_003161861.1 2096949 D 471856 CDS YP_003161862.1 256833135 8381080 2098511..2098882 1 NC_013174.1 PFAM: cation antiporter; KEGG: hha:Hhal_2031 cation antiporter; cation antiporter 2098882 8381080 Jden_1916 Jonesia denitrificans DSM 20603 cation antiporter YP_003161862.1 2098511 D 471856 CDS YP_003161863.1 256833136 8381081 2098879..2099136 1 NC_013174.1 PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 putative monovalent cation/H+ antiporter subunit F; multiple resistance and pH regulation protein F 2099136 8381081 Jden_1917 Jonesia denitrificans DSM 20603 multiple resistance and pH regulation protein F YP_003161863.1 2098879 D 471856 CDS YP_003161864.1 256833137 8381082 2099133..2099459 1 NC_013174.1 PFAM: Na+/H+ antiporter subunit; KEGG: sse:Ssed_1393 putative monovalent cation/H+ antiporter subunit G; Na+/H+ antiporter subunit 2099459 8381082 Jden_1918 Jonesia denitrificans DSM 20603 Na+/H+ antiporter subunit YP_003161864.1 2099133 D 471856 CDS YP_003161865.1 256833138 8381806 complement(2099727..2101166) 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3707 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2101166 8381806 Jden_1919 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003161865.1 2099727 R 471856 CDS YP_003161866.1 256833139 8381084 complement(2101320..2102306) 1 NC_013174.1 PFAM: Ppx/GppA phosphatase; KEGG: scl:sce1705 hypothetical protein; Ppx/GppA phosphatase 2102306 8381084 Jden_1920 Jonesia denitrificans DSM 20603 Ppx/GppA phosphatase YP_003161866.1 2101320 R 471856 CDS YP_003161867.1 256833140 8381085 complement(2102421..2102972) 1 NC_013174.1 PFAM: protein of unknown function DUF501; KEGG: csa:Csal_3040 hypothetical protein; hypothetical protein 2102972 8381085 Jden_1921 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161867.1 2102421 R 471856 CDS YP_003161868.1 256833141 8381086 complement(2102959..2103537) 1 NC_013174.1 PFAM: Septum formation initiator; septum formation initiator 2103537 8381086 Jden_1922 Jonesia denitrificans DSM 20603 septum formation initiator YP_003161868.1 2102959 R 471856 CDS YP_003161869.1 256833142 8381807 complement(2104005..2105297) 1 NC_013174.1 KEGG: ade:Adeh_1642 enolase; TIGRFAM: enolase; PFAM: enolase; enolase 2105297 8381807 Jden_1924 Jonesia denitrificans DSM 20603 enolase YP_003161869.1 2104005 R 471856 CDS YP_003161870.1 256833143 8381088 complement(2105377..2106102) 1 NC_013174.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: glo:Glov_2046 MazG family protein; MazG family protein 2106102 8381088 Jden_1925 Jonesia denitrificans DSM 20603 MazG family protein YP_003161870.1 2105377 R 471856 CDS YP_003161871.1 256833144 8381089 complement(2106179..2108245) 1 NC_013174.1 KEGG: bba:Bd1224 alpha-amylase; PFAM: alpha amylase catalytic region; Carbohydrate binding family 25; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; Alpha-amylase 2108245 8381089 Jden_1926 Jonesia denitrificans DSM 20603 Alpha-amylase YP_003161871.1 2106179 R 471856 CDS YP_003161872.1 256833145 8381090 complement(2108585..2111329) 1 NC_013174.1 PFAM: alpha amylase catalytic region; Carbohydrate binding family 25; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: sde:Sde_2938 ATPase; alpha amylase 2111329 8381090 Jden_1927 Jonesia denitrificans DSM 20603 alpha amylase YP_003161872.1 2108585 R 471856 CDS YP_003161873.1 256833146 8381091 2111810..2113948 1 NC_013174.1 PFAM: Carbohydrate-binding CenC domain protein; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: bsu:BSU18160 endo-1,4-beta-xylanase (xylanase D); Carbohydrate-binding CenC domain-containing protein 2113948 8381091 Jden_1928 Jonesia denitrificans DSM 20603 Carbohydrate-binding CenC domain-containing protein YP_003161873.1 2111810 D 471856 CDS YP_003161874.1 256833147 8381092 complement(2114036..2114851) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3617 ABC transporter-related protein; ABC transporter 2114851 8381092 Jden_1929 Jonesia denitrificans DSM 20603 ABC transporter YP_003161874.1 2114036 R 471856 CDS YP_003161875.1 256833148 8381093 complement(2114848..2115642) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_2772 ABC transporter related; ABC transporter 2115642 8381093 Jden_1930 Jonesia denitrificans DSM 20603 ABC transporter YP_003161875.1 2114848 R 471856 CDS YP_003161876.1 256833149 8381094 complement(2115639..2116529) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2771 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2116529 8381094 Jden_1931 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161876.1 2115639 R 471856 CDS YP_003161877.1 256833150 8381095 complement(2116526..2117491) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2770 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2117491 8381095 Jden_1932 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003161877.1 2116526 R 471856 CDS YP_003161878.1 256833151 8381096 complement(2117573..2119090) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_0459 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 2119090 8381096 Jden_1933 Jonesia denitrificans DSM 20603 family 5 extracellular solute-binding protein YP_003161878.1 2117573 R 471856 CDS YP_003161879.1 256833152 8381097 complement(2119533..2120765) 1 NC_013174.1 PFAM: protein of unknown function UPF0027; KEGG: scl:sce1307 hypothetical protein; hypothetical protein 2120765 8381097 Jden_1934 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161879.1 2119533 R 471856 CDS YP_003161880.1 256833153 8381098 complement(2120860..2124510) 1 NC_013174.1 KEGG: gsu:GSU0017 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; TRCF domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; transcription-repair coupling factor 2124510 8381098 Jden_1935 Jonesia denitrificans DSM 20603 transcription-repair coupling factor YP_003161880.1 2120860 R 471856 CDS YP_003161881.1 256833154 8381099 2124660..2126552 1 NC_013174.1 KEGG: mfa:Mfla_0340 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 2126552 8381099 Jden_1936 Jonesia denitrificans DSM 20603 dihydroxy-acid dehydratase YP_003161881.1 2124660 D 471856 CDS YP_003161882.1 256833155 8381809 2127324..2128031 1 NC_013174.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family; CarD family transcriptional regulator 2128031 8381809 Jden_1939 Jonesia denitrificans DSM 20603 CarD family transcriptional regulator YP_003161882.1 2127324 D 471856 CDS YP_003161883.1 256833156 8381101 complement(2128056..2128673) 1 NC_013174.1 KEGG: mxa:MXAN_5077 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 2128673 8381101 Jden_1940 Jonesia denitrificans DSM 20603 peptidyl-tRNA hydrolase YP_003161883.1 2128056 R 471856 CDS YP_003161884.1 256833157 8381102 complement(2128800..2129381) 1 NC_013174.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pen:PSEEN0856 50S ribosomal protein L25/general stress protein Ctc; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 2129381 8381102 Jden_1941 Jonesia denitrificans DSM 20603 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_003161884.1 2128800 R 471856 CDS YP_003161885.1 256833158 8381103 complement(2129533..2130516) 1 NC_013174.1 KEGG: bbt:BBta_1761 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2130516 8381103 Jden_1942 Jonesia denitrificans DSM 20603 ribose-phosphate pyrophosphokinase YP_003161885.1 2129533 R 471856 CDS YP_003161886.1 256833159 8381104 complement(2130520..2132169) 1 NC_013174.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: psb:Psyr_5119 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 2132169 8381104 Jden_1943 Jonesia denitrificans DSM 20603 UDP-N-acetylglucosamine pyrophosphorylase YP_003161886.1 2130520 R 471856 CDS YP_003161887.1 256833160 8381810 2132482..2133099 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family; TetR family transcriptional regulator 2133099 8381810 Jden_1944 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003161887.1 2132482 D 471856 CDS YP_003161888.1 256833161 8381106 2133232..2134143 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU09890 hypothetical protein; ABC transporter 2134143 8381106 Jden_1945 Jonesia denitrificans DSM 20603 ABC transporter YP_003161888.1 2133232 D 471856 CDS YP_003161889.1 256833162 8381107 2134146..2135348 1 NC_013174.1 PFAM: ABC-2 type transporter; KEGG: bha:BH1167 hypothetical protein; ABC transporter 2135348 8381107 Jden_1946 Jonesia denitrificans DSM 20603 ABC transporter YP_003161889.1 2134146 D 471856 CDS YP_003161890.1 256833163 8381108 2135412..2136122 1 NC_013174.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 2136122 8381108 Jden_1947 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003161890.1 2135412 D 471856 CDS YP_003161891.1 256833164 8381109 2136187..2137632 1 NC_013174.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pmr:PMI0655 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphogluconate dehydrogenase 2137632 8381109 Jden_1948 Jonesia denitrificans DSM 20603 6-phosphogluconate dehydrogenase YP_003161891.1 2136187 D 471856 CDS YP_003161892.1 256833165 8381110 2137788..2138288 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family; transcriptional regulator, MarR family 2138288 8381110 Jden_1949 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003161892.1 2137788 D 471856 CDS YP_003161893.1 256833166 8381111 complement(2138555..2140402) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2173 ABC transporter, ATP- binding protein; ABC transporter 2140402 8381111 Jden_1950 Jonesia denitrificans DSM 20603 ABC transporter YP_003161893.1 2138555 R 471856 CDS YP_003161894.1 256833167 8381811 complement(2140668..2142470) 1 NC_013174.1 KEGG: bha:BH0057 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; 4- diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: ribosomal RNA adenine methylase transferase; GHMP kinase; GHMP kinase domain protein; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 2142470 8381811 Jden_1952 Jonesia denitrificans DSM 20603 dimethyladenosine transferase YP_003161894.1 2140668 R 471856 CDS YP_003161895.1 256833168 8381113 complement(2142580..2143899) 1 NC_013174.1 PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bha:BH0055 hypothetical protein; transglycosylase 2143899 8381113 Jden_1953 Jonesia denitrificans DSM 20603 transglycosylase YP_003161895.1 2142580 R 471856 CDS YP_003161896.1 256833169 8381114 complement(2144223..2145569) 1 NC_013174.1 PFAM: protein of unknown function DUF348; KEGG: bph:Bphy_5604 hypothetical protein; hypothetical protein 2145569 8381114 Jden_1954 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161896.1 2144223 R 471856 CDS YP_003161897.1 256833170 8381115 complement(2145609..2146778) 1 NC_013174.1 PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bsu:BSU00400 hypothetical protein; G5 domain-containing protein 2146778 8381115 Jden_1955 Jonesia denitrificans DSM 20603 G5 domain-containing protein YP_003161897.1 2145609 R 471856 CDS YP_003161898.1 256833171 8381116 complement(2146875..2147786) 1 NC_013174.1 PFAM: TatD-related deoxyribonuclease; KEGG: pca:Pcar_1695 Mg-dependent DNase; TatD-related deoxyribonuclease 2147786 8381116 Jden_1956 Jonesia denitrificans DSM 20603 TatD-related deoxyribonuclease YP_003161898.1 2146875 R 471856 CDS YP_003161899.1 256833172 8381117 complement(2147840..2149456) 1 NC_013174.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: gme:Gmet_2321 methionyl-tRNA synthetase; methionyl-tRNA synthetase 2149456 8381117 Jden_1957 Jonesia denitrificans DSM 20603 methionyl-tRNA synthetase YP_003161899.1 2147840 R 471856 CDS YP_003161900.1 256833173 8381118 complement(2149461..2150954) 1 NC_013174.1 KEGG: bha:BH2090 glucose dehydrogenase-B; Glucose/sorbosone dehydrogenase-like protein 2150954 8381118 Jden_1958 Jonesia denitrificans DSM 20603 Glucose/sorbosone dehydrogenase-like protein YP_003161900.1 2149461 R 471856 CDS YP_003161901.1 256833174 8381119 2151071..2151655 1 NC_013174.1 PFAM: isochorismatase hydrolase; KEGG: sml:Smlt0257 putative pyrazinamidase/nicotinamidase; isochorismatase hydrolase 2151655 8381119 Jden_1959 Jonesia denitrificans DSM 20603 isochorismatase hydrolase YP_003161901.1 2151071 D 471856 CDS YP_003161902.1 256833175 8381120 2151766..2152860 1 NC_013174.1 KEGG: rec:RHECIAT_CH0003387 xylose ABC transporter, substrate-binding protein; xylose ABC transporter, substrate-binding protein 2152860 8381120 Jden_1960 Jonesia denitrificans DSM 20603 xylose ABC transporter, substrate-binding protein YP_003161902.1 2151766 D 471856 CDS YP_003161903.1 256833176 8381121 2152857..2154464 1 NC_013174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2154464 8381121 Jden_1961 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003161903.1 2152857 D 471856 CDS YP_003161904.1 256833177 8381122 complement(2154535..2156304) 1 NC_013174.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cvi:CV_0825 transport ATP-binding protein MsbA; ABC transporter 2156304 8381122 Jden_1962 Jonesia denitrificans DSM 20603 ABC transporter YP_003161904.1 2154535 R 471856 CDS YP_003161905.1 256833178 8381123 complement(2156350..2157186) 1 NC_013174.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aeh:Mlg_2203 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 2157186 8381123 Jden_1963 Jonesia denitrificans DSM 20603 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003161905.1 2156350 R 471856 CDS YP_003161906.1 256833179 8381124 2157430..2159148 1 NC_013174.1 PFAM: glycosyl transferase family 39; KEGG: mca:MCA2192 dolichyl-phosphate-mannose- protein mannosyltransferase family protein; glycosyl transferase family protein 2159148 8381124 Jden_1964 Jonesia denitrificans DSM 20603 glycosyl transferase family protein YP_003161906.1 2157430 D 471856 CDS YP_003161907.1 256833180 8381125 complement(2159202..2160608) 1 NC_013174.1 PFAM: Aldehyde Dehydrogenase; KEGG: amc:MADE_00587 NAD-dependent aldehyde dehydrogenase; Aldehyde Dehydrogenase 2160608 8381125 Jden_1965 Jonesia denitrificans DSM 20603 Aldehyde Dehydrogenase YP_003161907.1 2159202 R 471856 CDS YP_003161908.1 256833181 8381126 complement(2160624..2161799) 1 NC_013174.1 KEGG: similar to Sp17 protein; hypothetical protein 2161799 8381126 Jden_1966 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161908.1 2160624 R 471856 CDS YP_003161909.1 256833182 8381127 complement(2161893..2162507) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oca:OCAR_4695 ribosomal-protein-alanine N- acetyltransferase; N-acetyltransferase GCN5 2162507 8381127 Jden_1967 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003161909.1 2161893 R 471856 CDS YP_003161910.1 256833183 8381128 complement(2162534..2163778) 1 NC_013174.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: rpd:RPD_2838 MoeA-likedomain-containing protein; molybdenum cofactor synthesis domain-containing protein 2163778 8381128 Jden_1968 Jonesia denitrificans DSM 20603 molybdenum cofactor synthesis domain-containing protein YP_003161910.1 2162534 R 471856 CDS YP_003161911.1 256833184 8381129 2163947..2164591 1 NC_013174.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mgm:Mmc1_0714 5-formyltetrahydrofolate cyclo- ligase; 5-formyltetrahydrofolate cyclo-ligase 2164591 8381129 Jden_1969 Jonesia denitrificans DSM 20603 5-formyltetrahydrofolate cyclo-ligase YP_003161911.1 2163947 D 471856 CDS YP_003161912.1 256833185 8381130 2164669..2164872 1 NC_013174.1 TIGRFAM: regulatory protein, FmdB family; KEGG: aba:Acid345_0034 type I antifreeze protein; FmdB family regulatory protein 2164872 8381130 Jden_1970 Jonesia denitrificans DSM 20603 FmdB family regulatory protein YP_003161912.1 2164669 D 471856 CDS YP_003161913.1 256833186 8381131 2165025..2165690 1 NC_013174.1 PFAM: SAF domain protein; KEGG: msl:Msil_2690 Flp pilus assembly protein CpaB; SAF domain-containing protein 2165690 8381131 Jden_1971 Jonesia denitrificans DSM 20603 SAF domain-containing protein YP_003161913.1 2165025 D 471856 CDS YP_003161914.1 256833187 8381132 2165734..2166132 1 NC_013174.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: aba:Acid345_0006 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein 2166132 8381132 Jden_1972 Jonesia denitrificans DSM 20603 large conductance mechanosensitive channel protein YP_003161914.1 2165734 D 471856 CDS YP_003161915.1 256833188 8381133 complement(2166169..2166438) 1 NC_013174.1 hypothetical protein 2166438 8381133 Jden_1973 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161915.1 2166169 R 471856 CDS YP_003161916.1 256833189 8381134 complement(2166431..2170930) 1 NC_013174.1 KEGG: mch:Mchl_4744 putative superfamily I DNA and RNA helicase protein; hypothetical protein 2170930 8381134 Jden_1974 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161916.1 2166431 R 471856 CDS YP_003161917.1 256833190 8381135 2171565..2172320 1 NC_013174.1 hypothetical protein 2172320 8381135 Jden_1975 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161917.1 2171565 D 471856 CDS YP_003161918.1 256833191 8381136 complement(2172572..2172925) 1 NC_013174.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bca:BCE_0414 bacteriophage phi-105 protein- like protein; toxin secretion/phage lysis holin 2172925 8381136 Jden_1976 Jonesia denitrificans DSM 20603 toxin secretion/phage lysis holin YP_003161918.1 2172572 R 471856 CDS YP_003161919.1 256833192 8381137 2173184..2173645 1 NC_013174.1 hypothetical protein 2173645 8381137 Jden_1977 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161919.1 2173184 D 471856 CDS YP_003161920.1 256833193 8381138 complement(2173642..2174121) 1 NC_013174.1 hypothetical protein 2174121 8381138 Jden_1978 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161920.1 2173642 R 471856 CDS YP_003161921.1 256833194 8381139 2174567..2174755 1 NC_013174.1 hypothetical protein 2174755 8381139 Jden_1979 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161921.1 2174567 D 471856 CDS YP_003161922.1 256833195 8381140 complement(2175120..2176643) 1 NC_013174.1 KEGG: abu:Abu_0796 hypothetical protein; hypothetical protein 2176643 8381140 Jden_1980 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161922.1 2175120 R 471856 CDS YP_003161923.1 256833196 8381813 complement(2177303..2177863) 1 NC_013174.1 hypothetical protein 2177863 8381813 Jden_1982 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161923.1 2177303 R 471856 CDS YP_003161924.1 256833197 8381142 2178153..2178593 1 NC_013174.1 PFAM: OsmC family protein; OsmC family protein 2178593 8381142 Jden_1983 Jonesia denitrificans DSM 20603 OsmC family protein YP_003161924.1 2178153 D 471856 CDS YP_003161925.1 256833198 8381143 complement(2178666..2178839) 1 NC_013174.1 hypothetical protein 2178839 8381143 Jden_1984 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161925.1 2178666 R 471856 CDS YP_003161926.1 256833199 8381144 2179306..2180055 1 NC_013174.1 KEGG: spc:Sputcn32_2914 hypothetical protein; hypothetical protein 2180055 8381144 Jden_1985 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161926.1 2179306 D 471856 CDS YP_003161927.1 256833200 8381145 complement(2180081..2181034) 1 NC_013174.1 PFAM: UspA domain protein; KEGG: tgr:Tgr7_3238 universal stress protein; UspA domain-containing protein 2181034 8381145 Jden_1986 Jonesia denitrificans DSM 20603 UspA domain-containing protein YP_003161927.1 2180081 R 471856 CDS YP_003161928.1 256833201 8381146 complement(2181204..2182019) 1 NC_013174.1 PFAM: NLP/P60 protein; KEGG: bha:BH3671 cell wall lytic activity; NLP/P60 protein 2182019 8381146 Jden_1987 Jonesia denitrificans DSM 20603 NLP/P60 protein YP_003161928.1 2181204 R 471856 CDS YP_003161929.1 256833202 8381147 2182230..2182430 1 NC_013174.1 hypothetical protein 2182430 8381147 Jden_1988 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161929.1 2182230 D 471856 CDS YP_003161930.1 256833203 8381148 complement(2182380..2183084) 1 NC_013174.1 PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: sus:Acid_2178 DtxR family iron dependent repressor; DtxR family iron (metal) dependent repressor 2183084 8381148 Jden_1989 Jonesia denitrificans DSM 20603 DtxR family iron (metal) dependent repressor YP_003161930.1 2182380 R 471856 CDS YP_003161931.1 256833204 8381149 2183254..2184372 1 NC_013174.1 KEGG: zmo:ZMO1684 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2184372 8381149 Jden_1990 Jonesia denitrificans DSM 20603 phosphoserine aminotransferase YP_003161931.1 2183254 D 471856 CDS YP_003161932.1 256833205 8381150 complement(2184369..2185721) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1; major facilitator superfamily protein 2185721 8381150 Jden_1991 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003161932.1 2184369 R 471856 CDS YP_003161933.1 256833206 8381151 complement(2185718..2186158) 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator; transcriptional regulator, MarR family 2186158 8381151 Jden_1992 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003161933.1 2185718 R 471856 CDS YP_003161934.1 256833207 8381152 complement(2186234..2187499) 1 NC_013174.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: scl:sce4699 mannose-6-phosphate isomerase; mannose-6-phosphate isomerase 2187499 8381152 Jden_1993 Jonesia denitrificans DSM 20603 mannose-6-phosphate isomerase YP_003161934.1 2186234 R 471856 CDS YP_003161935.1 256833208 8381153 complement(2187577..2187870) 1 NC_013174.1 hypothetical protein 2187870 8381153 Jden_1994 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161935.1 2187577 R 471856 CDS YP_003161936.1 256833209 8381154 2187936..2189120 1 NC_013174.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: aba:Acid345_1526 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2189120 8381154 Jden_1995 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003161936.1 2187936 D 471856 CDS YP_003161937.1 256833210 8381155 complement(2189239..2190795) 1 NC_013174.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: afw:Anae109_3412 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 2190795 8381155 Jden_1996 Jonesia denitrificans DSM 20603 xanthine/uracil/vitamin C permease YP_003161937.1 2189239 R 471856 CDS YP_003161938.1 256833211 8381156 complement(2190914..2191420) 1 NC_013174.1 hypothetical protein 2191420 8381156 Jden_1997 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161938.1 2190914 R 471856 CDS YP_003161939.1 256833212 8381157 complement(2191417..2191779) 1 NC_013174.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mgm:Mmc1_3585 response regulator receiver protein; response regulator receiver protein 2191779 8381157 Jden_1998 Jonesia denitrificans DSM 20603 response regulator receiver protein YP_003161939.1 2191417 R 471856 CDS YP_003161940.1 256833213 8381158 complement(2191795..2192283) 1 NC_013174.1 KEGG: ppd:Ppro_3420 hypothetical protein; hypothetical protein 2192283 8381158 Jden_1999 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161940.1 2191795 R 471856 CDS YP_003161941.1 256833214 8381159 complement(2192280..2192663) 1 NC_013174.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aba:Acid345_1527 response regulator receiver protein, CheY; response regulator receiver protein 2192663 8381159 Jden_2000 Jonesia denitrificans DSM 20603 response regulator receiver protein YP_003161941.1 2192280 R 471856 CDS YP_003161942.1 256833215 8381160 complement(2192665..2193495) 1 NC_013174.1 KEGG: bra:BRADO7000 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 2193495 8381160 Jden_2001 Jonesia denitrificans DSM 20603 chemotaxis protein CheR YP_003161942.1 2192665 R 471856 CDS YP_003161943.1 256833216 8381161 complement(2193492..2194649) 1 NC_013174.1 KEGG: aba:Acid345_1528 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 2194649 8381161 Jden_2002 Jonesia denitrificans DSM 20603 response regulator receiver modulated CheB methylesterase YP_003161943.1 2193492 R 471856 CDS YP_003161944.1 256833217 8381162 complement(2194787..2195209) 1 NC_013174.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rce:RC1_1757 purine-binding chemotaxis protein CheW, putative; CheW protein 2195209 8381162 Jden_2003 Jonesia denitrificans DSM 20603 CheW protein YP_003161944.1 2194787 R 471856 CDS YP_003161945.1 256833218 8381163 complement(2195209..2197599) 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 2197599 8381163 Jden_2004 Jonesia denitrificans DSM 20603 CheA signal transduction histidine kinase YP_003161945.1 2195209 R 471856 CDS YP_003161946.1 256833219 8381164 complement(2197690..2197968) 1 NC_013174.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: xcb:XC_2506 carbon storage regulator; carbon storage regulator CsrA 2197968 8381164 Jden_2005 Jonesia denitrificans DSM 20603 carbon storage regulator CsrA YP_003161946.1 2197690 R 471856 CDS YP_003161947.1 256833220 8381165 complement(2197979..2199400) 1 NC_013174.1 KEGG: GK19423 gene product from transcript GK19423- RA; hypothetical protein 2199400 8381165 Jden_2006 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161947.1 2197979 R 471856 CDS YP_003161948.1 256833221 8381166 complement(2199378..2201441) 1 NC_013174.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: pca:Pcar_1162 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 2201441 8381166 Jden_2007 Jonesia denitrificans DSM 20603 flagellar biosynthesis protein FlhA YP_003161948.1 2199378 R 471856 CDS YP_003161949.1 256833222 8381167 complement(2201428..2202570) 1 NC_013174.1 PFAM: type III secretion exporter; KEGG: bvi:Bcep1808_0227 flagellar biosynthesis protein FlhB; type III secretion exporter 2202570 8381167 Jden_2008 Jonesia denitrificans DSM 20603 type III secretion exporter YP_003161949.1 2201428 R 471856 CDS YP_003161950.1 256833223 8381168 complement(2202567..2203328) 1 NC_013174.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: bbr:BB2576 flagellar biosynthetic protein; flagellar biosynthetic protein FliR 2203328 8381168 Jden_2009 Jonesia denitrificans DSM 20603 flagellar biosynthetic protein FliR YP_003161950.1 2202567 R 471856 CDS YP_003161951.1 256833224 8381169 complement(2203330..2203602) 1 NC_013174.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: tgr:Tgr7_1332 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 2203602 8381169 Jden_2010 Jonesia denitrificans DSM 20603 flagellar biosynthetic protein FliQ YP_003161951.1 2203330 R 471856 CDS YP_003161952.1 256833225 8381170 complement(2203612..2204442) 1 NC_013174.1 KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 2204442 8381170 Jden_2011 Jonesia denitrificans DSM 20603 flagellar biosynthetic protein FliP YP_003161952.1 2203612 R 471856 CDS YP_003161953.1 256833226 8381171 complement(2204448..2205071) 1 NC_013174.1 hypothetical protein 2205071 8381171 Jden_2012 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161953.1 2204448 R 471856 CDS YP_003161954.1 256833227 8381172 complement(2205071..2205850) 1 NC_013174.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpi:Rpic_4755 flagellar motor switch protein FliN; flagellar motor switch protein FliN 2205850 8381172 Jden_2013 Jonesia denitrificans DSM 20603 flagellar motor switch protein FliN YP_003161954.1 2205071 R 471856 CDS YP_003161955.1 256833228 8381173 complement(2205850..2206776) 1 NC_013174.1 PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: sat:SYN_02837 flagellar motor switch protein; flagellar motor switch protein FliM 2206776 8381173 Jden_2014 Jonesia denitrificans DSM 20603 flagellar motor switch protein FliM YP_003161955.1 2205850 R 471856 CDS YP_003161956.1 256833229 8381174 complement(2206888..2207403) 1 NC_013174.1 PFAM: flagellar basal body-associated protein FliL; KEGG: bph:Bphy_2937 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 2207403 8381174 Jden_2015 Jonesia denitrificans DSM 20603 flagellar basal body-associated protein FliL YP_003161956.1 2206888 R 471856 CDS YP_003161957.1 256833230 8381175 complement(2207393..2208310) 1 NC_013174.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU3028 chemotaxis MotB protein; OmpA/MotB domain-containing protein 2208310 8381175 Jden_2016 Jonesia denitrificans DSM 20603 OmpA/MotB domain-containing protein YP_003161957.1 2207393 R 471856 CDS YP_003161958.1 256833231 8381176 complement(2208307..2209092) 1 NC_013174.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mms:mma_2082 MotA chemotaxis protein; MotA/TolQ/ExbB proton channel 2209092 8381176 Jden_2017 Jonesia denitrificans DSM 20603 MotA/TolQ/ExbB proton channel YP_003161958.1 2208307 R 471856 CDS YP_003161959.1 256833232 8381177 complement(2209092..2209355) 1 NC_013174.1 PFAM: flagellar FlbD family protein; KEGG: gme:Gmet_0462 flagellar protein; flagellar FlbD family protein 2209355 8381177 Jden_2018 Jonesia denitrificans DSM 20603 flagellar FlbD family protein YP_003161959.1 2209092 R 471856 CDS YP_003161960.1 256833233 8381178 complement(2209457..2210650) 1 NC_013174.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; KEGG: aba:Acid345_1645 flagellar basal body FlaE; hypothetical protein 2210650 8381178 Jden_2019 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161960.1 2209457 R 471856 CDS YP_003161961.1 256833234 8381179 complement(2210677..2211162) 1 NC_013174.1 PFAM: flagellar hook capping protein; KEGG: bja:bll6853 flagellar basal body rod modification protein; flagellar hook capping protein 2211162 8381179 Jden_2020 Jonesia denitrificans DSM 20603 flagellar hook capping protein YP_003161961.1 2210677 R 471856 CDS YP_003161962.1 256833235 8381180 complement(2211171..2212550) 1 NC_013174.1 KEGG: bpa:BPP1505 flagellar hook-length control protein; hypothetical protein 2212550 8381180 Jden_2021 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161962.1 2211171 R 471856 CDS YP_003161963.1 256833236 8381181 complement(2212547..2213275) 1 NC_013174.1 PFAM: NLP/P60 protein; KEGG: csa:Csal_0184 NLP/P60; NLP/P60 protein 2213275 8381181 Jden_2022 Jonesia denitrificans DSM 20603 NLP/P60 protein YP_003161963.1 2212547 R 471856 CDS YP_003161964.1 256833237 8381182 complement(2213265..2213720) 1 NC_013174.1 PFAM: flagellar FliJ protein; KEGG: dal:Dalk_5199 hypothetical protein; flagellar FliJ protein 2213720 8381182 Jden_2023 Jonesia denitrificans DSM 20603 flagellar FliJ protein YP_003161964.1 2213265 R 471856 CDS YP_003161965.1 256833238 8381183 complement(2213745..2215085) 1 NC_013174.1 KEGG: dvu:DVU0310 flagellum-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase 2215085 8381183 Jden_2024 Jonesia denitrificans DSM 20603 FliI/YscN family ATPase YP_003161965.1 2213745 R 471856 CDS YP_003161966.1 256833239 8381184 complement(2215082..2215783) 1 NC_013174.1 KEGG: afw:Anae109_2217 flagellar assembly protein FliH, putative; hypothetical protein 2215783 8381184 Jden_2025 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161966.1 2215082 R 471856 CDS YP_003161967.1 256833240 8381185 complement(2215767..2216792) 1 NC_013174.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bsu:BSU16220 flagellar motor switch protein G; flagellar motor switch protein FliG 2216792 8381185 Jden_2026 Jonesia denitrificans DSM 20603 flagellar motor switch protein FliG YP_003161967.1 2215767 R 471856 CDS YP_003161968.1 256833241 8381186 complement(2216789..2218393) 1 NC_013174.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: bvi:Bcep1808_3149 flagellar MS-ring protein; flagellar M-ring protein FliF 2218393 8381186 Jden_2027 Jonesia denitrificans DSM 20603 flagellar M-ring protein FliF YP_003161968.1 2216789 R 471856 CDS YP_003161969.1 256833242 8381187 complement(2218393..2218725) 1 NC_013174.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: bha:BH2459 flagellar hook-basal body protein FliE; flagellar hook-basal body complex subunit FliE 2218725 8381187 Jden_2028 Jonesia denitrificans DSM 20603 flagellar hook-basal body complex subunit FliE YP_003161969.1 2218393 R 471856 CDS YP_003161970.1 256833243 8381188 complement(2218725..2219129) 1 NC_013174.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bcz:BCZK1521 flagellar basal body rod protein FlgC; flagellar basal body rod protein 2219129 8381188 Jden_2029 Jonesia denitrificans DSM 20603 flagellar basal body rod protein YP_003161970.1 2218725 R 471856 CDS YP_003161971.1 256833244 8381189 complement(2219129..2219470) 1 NC_013174.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: aba:Acid345_1655 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 2219470 8381189 Jden_2030 Jonesia denitrificans DSM 20603 flagellar basal-body rod protein FlgB YP_003161971.1 2219129 R 471856 CDS YP_003161972.1 256833245 8381190 complement(2219463..2219639) 1 NC_013174.1 hypothetical protein 2219639 8381190 Jden_2031 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161972.1 2219463 R 471856 CDS YP_003161973.1 256833246 8381191 complement(2219645..2220022) 1 NC_013174.1 hypothetical protein 2220022 8381191 Jden_2032 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161973.1 2219645 R 471856 CDS YP_003161974.1 256833247 8381192 complement(2220000..2220461) 1 NC_013174.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: bha:BH3613 flagellar protein FliS; flagellar protein FliS 2220461 8381192 Jden_2033 Jonesia denitrificans DSM 20603 flagellar protein FliS YP_003161974.1 2220000 R 471856 CDS YP_003161975.1 256833248 8381193 complement(2220474..2221823) 1 NC_013174.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook- associated protein 2 domain protein; KEGG: neu:NE1595 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 2221823 8381193 Jden_2034 Jonesia denitrificans DSM 20603 flagellar hook-associated 2 domain-containing protein YP_003161975.1 2220474 R 471856 CDS YP_003161976.1 256833249 8381194 complement(2221999..2222886) 1 NC_013174.1 PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin; flagellin domain-containing protein 2222886 8381194 Jden_2035 Jonesia denitrificans DSM 20603 flagellin domain-containing protein YP_003161976.1 2221999 R 471856 CDS YP_003161977.1 256833250 8381195 complement(2223041..2223955) 1 NC_013174.1 PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin; flagellin domain-containing protein 2223955 8381195 Jden_2036 Jonesia denitrificans DSM 20603 flagellin domain-containing protein YP_003161977.1 2223041 R 471856 CDS YP_003161978.1 256833251 8381196 complement(2224123..2225004) 1 NC_013174.1 PFAM: flagellin domain protein; KEGG: gsu:GSU3038 flagellin FliC; flagellin domain-containing protein 2225004 8381196 Jden_2037 Jonesia denitrificans DSM 20603 flagellin domain-containing protein YP_003161978.1 2224123 R 471856 CDS YP_003161979.1 256833252 8381197 complement(2225159..2226046) 1 NC_013174.1 PFAM: flagellin domain protein; KEGG: gsu:GSU3038 flagellin FliC; flagellin domain-containing protein 2226046 8381197 Jden_2038 Jonesia denitrificans DSM 20603 flagellin domain-containing protein YP_003161979.1 2225159 R 471856 CDS YP_003161980.1 256833253 8381198 complement(2226154..2227200) 1 NC_013174.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gur:Gura_4108 RNA polymerase, sigma 28 subunit, FliA/WhiG; FliA/WhiG subfamily RNA polymerase sigma-28 subunit 2227200 8381198 Jden_2039 Jonesia denitrificans DSM 20603 FliA/WhiG subfamily RNA polymerase sigma-28 subunit YP_003161980.1 2226154 R 471856 CDS YP_003161981.1 256833254 8381199 2227501..2227986 1 NC_013174.1 PFAM: FlgN family protein; FlgN family protein 2227986 8381199 Jden_2040 Jonesia denitrificans DSM 20603 FlgN family protein YP_003161981.1 2227501 D 471856 CDS YP_003161982.1 256833255 8381200 2227995..2229386 1 NC_013174.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 2229386 8381200 Jden_2041 Jonesia denitrificans DSM 20603 flagellar hook-associated protein FlgK YP_003161982.1 2227995 D 471856 CDS YP_003161983.1 256833256 8381201 2229383..2230300 1 NC_013174.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: bsu:BSU35400 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 2230300 8381201 Jden_2042 Jonesia denitrificans DSM 20603 flagellar hook-associated protein 3 YP_003161983.1 2229383 D 471856 CDS YP_003161984.1 256833257 8381202 2230297..2230668 1 NC_013174.1 PFAM: protein of unknown function DUF180; KEGG: sat:SYN_02809 transmembrane protein; hypothetical protein 2230668 8381202 Jden_2043 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161984.1 2230297 D 471856 CDS YP_003161985.1 256833258 8381203 2230725..2231921 1 NC_013174.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: cja:CJA_1814 putative signal transduction protein containing EAL and modified HD-GYP domains; putative signal transduction protein 2231921 8381203 Jden_2044 Jonesia denitrificans DSM 20603 putative signal transduction protein YP_003161985.1 2230725 D 471856 CDS YP_003161986.1 256833259 8381204 complement(2231893..2232960) 1 NC_013174.1 KEGG: Liprin-alpha 2; hypothetical protein 2232960 8381204 Jden_2045 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161986.1 2231893 R 471856 CDS YP_003161987.1 256833260 8381205 complement(2233059..2233838) 1 NC_013174.1 hypothetical protein 2233838 8381205 Jden_2046 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161987.1 2233059 R 471856 CDS YP_003161988.1 256833261 8381206 complement(2233845..2234228) 1 NC_013174.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: vok:COSY_0845 cold shock protein; cold-shock DNA-binding domain-containing protein 2234228 8381206 Jden_2047 Jonesia denitrificans DSM 20603 cold-shock DNA-binding domain-containing protein YP_003161988.1 2233845 R 471856 CDS YP_003161989.1 256833262 8381207 2234388..2236856 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2236856 8381207 Jden_2048 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161989.1 2234388 D 471856 CDS YP_003161990.1 256833263 8381208 2236853..2238529 1 NC_013174.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: hypothetical protein; K10843 DNA excision repair protein ERCC-3; helicase domain-containing protein 2238529 8381208 Jden_2049 Jonesia denitrificans DSM 20603 helicase domain-containing protein YP_003161990.1 2236853 D 471856 CDS YP_003161991.1 256833264 8381209 2238623..2239201 1 NC_013174.1 KEGG: mxa:MXAN_6701 hypothetical protein; hypothetical protein 2239201 8381209 Jden_2050 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161991.1 2238623 D 471856 CDS YP_003161992.1 256833265 8381210 2239313..2240023 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH3157 two-component response regulator involved in phosphate regulation; two component transcriptional regulator, winged helix family 2240023 8381210 Jden_2051 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003161992.1 2239313 D 471856 CDS YP_003161993.1 256833266 8381211 2240038..2241600 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_5478 integral membrane sensor signal transduction histidine kinase; histidine kinase 2241600 8381211 Jden_2052 Jonesia denitrificans DSM 20603 histidine kinase YP_003161993.1 2240038 D 471856 CDS YP_003161994.1 256833267 8381212 2241769..2242497 1 NC_013174.1 KEGG: hch:HCH_04271 hypothetical protein; hypothetical protein 2242497 8381212 Jden_2053 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161994.1 2241769 D 471856 CDS YP_003161995.1 256833268 8381213 2242630..2242920 1 NC_013174.1 PFAM: protein of unknown function DUF909; hypothetical protein 2242920 8381213 Jden_2054 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161995.1 2242630 D 471856 CDS YP_003161996.1 256833269 8381214 complement(2243028..2244659) 1 NC_013174.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: bcb:BCB4264_A0298 chaperonin GroL; chaperonin GroEL 2244659 8381214 Jden_2055 Jonesia denitrificans DSM 20603 chaperonin GroEL YP_003161996.1 2243028 R 471856 CDS YP_003161997.1 256833270 8381215 complement(2244846..2245328) 1 NC_013174.1 PFAM: transcription activator effector binding; KEGG: sdn:Sden_1132 transcription activator, effector binding; transcriptional activator ligand binding domain-containing protein 2245328 8381215 Jden_2056 Jonesia denitrificans DSM 20603 transcriptional activator ligand binding domain-containing protein YP_003161997.1 2244846 R 471856 CDS YP_003161998.1 256833271 8381216 complement(2245543..2247006) 1 NC_013174.1 PFAM: FAD dependent oxidoreductase; KEGG: acp:A2cp1_0251 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2247006 8381216 Jden_2057 Jonesia denitrificans DSM 20603 FAD dependent oxidoreductase YP_003161998.1 2245543 R 471856 CDS YP_003161999.1 256833272 8381217 complement(2247031..2247570) 1 NC_013174.1 KEGG: sit:TM1040_1762 mucin-associated surface protein; hypothetical protein 2247570 8381217 Jden_2058 Jonesia denitrificans DSM 20603 hypothetical protein YP_003161999.1 2247031 R 471856 CDS YP_003162000.1 256833273 8381218 complement(2247861..2248154) 1 NC_013174.1 hypothetical protein 2248154 8381218 Jden_2059 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162000.1 2247861 R 471856 CDS YP_003162001.1 256833274 8381219 2248310..2249155 1 NC_013174.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bcb:BCB4264_A2458 hypothetical protein; G-D-S-L family lipolytic protein 2249155 8381219 Jden_2060 Jonesia denitrificans DSM 20603 G-D-S-L family lipolytic protein YP_003162001.1 2248310 D 471856 CDS YP_003162002.1 256833275 8381814 complement(2249391..2250230) 1 NC_013174.1 KEGG: scl:sce2958 putative secreted protein; hypothetical protein 2250230 8381814 Jden_2061 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162002.1 2249391 R 471856 CDS YP_003162003.1 256833276 8381221 complement(2250356..2252209) 1 NC_013174.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: afw:Anae109_2094 protein kinase; serine/threonine protein kinase 2252209 8381221 Jden_2062 Jonesia denitrificans DSM 20603 serine/threonine protein kinase YP_003162003.1 2250356 R 471856 CDS YP_003162004.1 256833277 8381222 2252309..2253808 1 NC_013174.1 PFAM: glycosyl transferase family 20; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase (UDP- forming) 2253808 8381222 Jden_2063 Jonesia denitrificans DSM 20603 Alpha,alpha-trehalose-phosphate synthase (UDP- forming) YP_003162004.1 2252309 D 471856 CDS YP_003162005.1 256833278 8381223 2253805..2254611 1 NC_013174.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ank:AnaeK_1152 HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase 2254611 8381223 Jden_2064 Jonesia denitrificans DSM 20603 trehalose-phosphatase YP_003162005.1 2253805 D 471856 CDS YP_003162006.1 256833279 8381224 2254780..2255880 1 NC_013174.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bsu:BSU38810 multiple sugar-binding transport ATP-binding protein; ABC transporter 2255880 8381224 Jden_2065 Jonesia denitrificans DSM 20603 ABC transporter YP_003162006.1 2254780 D 471856 CDS YP_003162007.1 256833280 8381225 2256031..2257272 1 NC_013174.1 KEGG: rce:RC1_1749 hypothetical protein; hypothetical protein 2257272 8381225 Jden_2066 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162007.1 2256031 D 471856 CDS YP_003162008.1 256833281 8381226 complement(2257298..2258278) 1 NC_013174.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase 2258278 8381226 Jden_2067 Jonesia denitrificans DSM 20603 TrmH family RNA methyltransferase YP_003162008.1 2257298 R 471856 CDS YP_003162009.1 256833282 8381227 complement(2258318..2259727) 1 NC_013174.1 KEGG: dal:Dalk_0769 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); cysteinyl-tRNA synthetase 2259727 8381227 Jden_2068 Jonesia denitrificans DSM 20603 cysteinyl-tRNA synthetase YP_003162009.1 2258318 R 471856 CDS YP_003162010.1 256833283 8381228 complement(2259845..2262127) 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: esa:ESA_02100 hypothetical protein; glycoside hydrolase family 3 2262127 8381228 Jden_2069 Jonesia denitrificans DSM 20603 glycoside hydrolase family 3 YP_003162010.1 2259845 R 471856 CDS YP_003162011.1 256833284 8381229 complement(2262166..2263059) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02026 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 2263059 8381229 Jden_2070 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162011.1 2262166 R 471856 CDS YP_003162012.1 256833285 8381230 complement(2263056..2264093) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 2264093 8381230 Jden_2071 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162012.1 2263056 R 471856 CDS YP_003162013.1 256833286 8381231 complement(2264103..2265398) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc02471 putative periplasmic binding ABC transporter protein; extracellular solute-binding protein 2265398 8381231 Jden_2072 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003162013.1 2264103 R 471856 CDS YP_003162014.1 256833287 8381232 2265554..2266564 1 NC_013174.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; transcriptional regulator, LacI family 2266564 8381232 Jden_2073 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003162014.1 2265554 D 471856 CDS YP_003162015.1 256833288 8381233 complement(2266599..2267120) 1 NC_013174.1 KEGG: eli:ELI_06290 bifunctional 2-C-methyl-D- erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D- erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2267120 8381233 Jden_2074 Jonesia denitrificans DSM 20603 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003162015.1 2266599 R 471856 CDS YP_003162016.1 256833289 8381234 complement(2267117..2267905) 1 NC_013174.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: azc:AZC_3089 4-diphosphocytidyl-2C-methyl-D- erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2267905 8381234 Jden_2075 Jonesia denitrificans DSM 20603 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003162016.1 2267117 R 471856 CDS YP_003162017.1 256833290 8381235 complement(2267902..2269299) 1 NC_013174.1 hypothetical protein 2269299 8381235 Jden_2076 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162017.1 2267902 R 471856 CDS YP_003162018.1 256833291 8381236 complement(2269416..2269901) 1 NC_013174.1 PFAM: transcription factor CarD; KEGG: bcb:BCB4264_A4827 transcriptional regulator, CarD family; BadM/Rrf2 family transcriptional regulator 2269901 8381236 Jden_2077 Jonesia denitrificans DSM 20603 BadM/Rrf2 family transcriptional regulator YP_003162018.1 2269416 R 471856 CDS YP_003162019.1 256833292 8381237 2270132..2270617 1 NC_013174.1 KEGG: bmj:BMULJ_04809 cable pili-associated 22 kDa adhesin protein; cable pili-associated 22 kDa adhesin protein 2270617 8381237 Jden_2078 Jonesia denitrificans DSM 20603 cable pili-associated 22 kDa adhesin protein YP_003162019.1 2270132 D 471856 CDS YP_003162020.1 256833293 8381238 complement(2270707..2271486) 1 NC_013174.1 KEGG: gme:Gmet_2704 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 2271486 8381238 Jden_2079 Jonesia denitrificans DSM 20603 phosphate ABC transporter ATPase YP_003162020.1 2270707 R 471856 CDS YP_003162021.1 256833294 8381239 complement(2271516..2272589) 1 NC_013174.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0371 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 2272589 8381239 Jden_2080 Jonesia denitrificans DSM 20603 phosphate ABC transporter permease YP_003162021.1 2271516 R 471856 CDS YP_003162022.1 256833295 8381240 complement(2272589..2273650) 1 NC_013174.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_2702 phosphate ABC transporter permease; phosphate ABC transporter permease 2273650 8381240 Jden_2081 Jonesia denitrificans DSM 20603 phosphate ABC transporter permease YP_003162022.1 2272589 R 471856 CDS YP_003162023.1 256833296 8381241 complement(2273757..2274902) 1 NC_013174.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gdj:Gdia_2690 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein 2274902 8381241 Jden_2082 Jonesia denitrificans DSM 20603 phosphate ABC transporter substrate-binding protein YP_003162023.1 2273757 R 471856 CDS YP_003162024.1 256833297 8381242 complement(2275074..2275787) 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_4006 two component transcriptional regulator; two component transcriptional regulator, winged helix family 2275787 8381242 Jden_2083 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003162024.1 2275074 R 471856 CDS YP_003162025.1 256833298 8381243 complement(2275784..2276965) 1 NC_013174.1 KEGG: hha:Hhal_0097 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase 2276965 8381243 Jden_2084 Jonesia denitrificans DSM 20603 histidine kinase YP_003162025.1 2275784 R 471856 CDS YP_003162026.1 256833299 8381244 2277178..2277846 1 NC_013174.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: mlo:mlr5643 phosphate regulon transcriptional regulator, PhoU; phosphate uptake regulator PhoU 2277846 8381244 Jden_2085 Jonesia denitrificans DSM 20603 phosphate uptake regulator PhoU YP_003162026.1 2277178 D 471856 CDS YP_003162027.1 256833300 8381245 complement(2277977..2278723) 1 NC_013174.1 KEGG: GPM1; phosphoglycerate mutase similar to S. cerevisiae GPM1 (YKL152C); glycolysis; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 2278723 8381245 Jden_2086 Jonesia denitrificans DSM 20603 phosphoglycerate mutase YP_003162027.1 2277977 R 471856 CDS YP_003162028.1 256833301 8381246 complement(2278788..2280062) 1 NC_013174.1 TIGRFAM: UDP-N-acetylglucosamine; PFAM: glycosyl transferase group 1; KEGG: cti:RALTA_A0583 putative glycosyl transferase, group 1; D-inositol-3-phosphate glycosyltransferase 2280062 8381246 Jden_2087 Jonesia denitrificans DSM 20603 D-inositol-3-phosphate glycosyltransferase YP_003162028.1 2278788 R 471856 CDS YP_003162029.1 256833302 8381815 complement(2280555..2281691) 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2281691 8381815 Jden_2089 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162029.1 2280555 R 471856 CDS YP_003162030.1 256833303 8381248 complement(2281868..2282197) 1 NC_013174.1 hypothetical protein 2282197 8381248 Jden_2090 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162030.1 2281868 R 471856 CDS YP_003162031.1 256833304 8381249 complement(2282279..2282458) 1 NC_013174.1 hypothetical protein 2282458 8381249 Jden_2091 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162031.1 2282279 R 471856 CDS YP_003162032.1 256833305 8381250 complement(2282502..2284049) 1 NC_013174.1 KEGG: kpn:KPN_03318 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 2284049 8381250 Jden_2092 Jonesia denitrificans DSM 20603 lysyl-tRNA synthetase YP_003162032.1 2282502 R 471856 CDS YP_003162033.1 256833306 8381251 complement(2284156..2285079) 1 NC_013174.1 KEGG: mag:amb3885 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2285079 8381251 Jden_2093 Jonesia denitrificans DSM 20603 nicotinate-nucleotide pyrophosphorylase YP_003162033.1 2284156 R 471856 CDS YP_003162034.1 256833307 8381252 complement(2285082..2286851) 1 NC_013174.1 KEGG: aba:Acid345_2250 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; L-aspartate oxidase 2286851 8381252 Jden_2094 Jonesia denitrificans DSM 20603 L-aspartate oxidase YP_003162034.1 2285082 R 471856 CDS YP_003162035.1 256833308 8381253 complement(2286848..2287285) 1 NC_013174.1 KEGG: gbm:Gbem_3010 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 2287285 8381253 Jden_2095 Jonesia denitrificans DSM 20603 aspartate 1-decarboxylase YP_003162035.1 2286848 R 471856 CDS YP_003162036.1 256833309 8381254 complement(2287329..2288237) 1 NC_013174.1 KEGG: sal:Sala_3003 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 2288237 8381254 Jden_2096 Jonesia denitrificans DSM 20603 pantoate/beta-alanine ligase YP_003162036.1 2287329 R 471856 CDS YP_003162037.1 256833310 8381255 complement(2288234..2289217) 1 NC_013174.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rpi:Rpic_4547 NADP oxidoreductase coenzyme F420-dependent; coenzyme F420-dependent NADP oxidoreductase 2289217 8381255 Jden_2097 Jonesia denitrificans DSM 20603 coenzyme F420-dependent NADP oxidoreductase YP_003162037.1 2288234 R 471856 CDS YP_003162038.1 256833311 8381256 complement(2289231..2290907) 1 NC_013174.1 PFAM: membrane-flanked domain protein; KEGG: sal:Sala_3015 membrane-flanked domain protein- containing protein; membrane-flanked domain-containing protein 2290907 8381256 Jden_2098 Jonesia denitrificans DSM 20603 membrane-flanked domain-containing protein YP_003162038.1 2289231 R 471856 CDS YP_003162039.1 256833312 8381257 complement(2290919..2291416) 1 NC_013174.1 PFAM: membrane-flanked domain protein; KEGG: eli:ELI_13595 hypothetical protein; membrane-flanked domain-containing protein 2291416 8381257 Jden_2099 Jonesia denitrificans DSM 20603 membrane-flanked domain-containing protein YP_003162039.1 2290919 R 471856 CDS YP_003162040.1 256833313 8381258 complement(2291464..2291949) 1 NC_013174.1 hypothetical protein 2291949 8381258 Jden_2100 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162040.1 2291464 R 471856 CDS YP_003162041.1 256833314 8381259 complement(2291954..2294479) 1 NC_013174.1 TIGRFAM: 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; dihydroneopterin aldolase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; dihydroneopterin aldolase; KEGG: pca:Pcar_0250 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2294479 8381259 Jden_2101 Jonesia denitrificans DSM 20603 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003162041.1 2291954 R 471856 CDS YP_003162042.1 256833315 8381260 complement(2294677..2295534) 1 NC_013174.1 KEGG: afw:Anae109_2337 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2295534 8381260 Jden_2102 Jonesia denitrificans DSM 20603 dihydropteroate synthase YP_003162042.1 2294677 R 471856 CDS YP_003162043.1 256833316 8381261 complement(2295553..2296155) 1 NC_013174.1 KEGG: bcy:Bcer98_1234 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 2296155 8381261 Jden_2103 Jonesia denitrificans DSM 20603 GTP cyclohydrolase I YP_003162043.1 2295553 R 471856 CDS YP_003162044.1 256833317 8381262 complement(2296164..2298197) 1 NC_013174.1 KEGG: bsu:BSU00690 cell-division protein and general stress protein (class III heat-shock); TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2298197 8381262 Jden_2104 Jonesia denitrificans DSM 20603 ATP-dependent metalloprotease FtsH YP_003162044.1 2296164 R 471856 CDS YP_003162045.1 256833318 8381263 complement(2298392..2298943) 1 NC_013174.1 KEGG: bcb:BCB4264_A0071 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2298943 8381263 Jden_2105 Jonesia denitrificans DSM 20603 hypoxanthine phosphoribosyltransferase YP_003162045.1 2298392 R 471856 CDS YP_003162046.1 256833319 8381264 complement(2298986..2300005) 1 NC_013174.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: afw:Anae109_2339 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 2300005 8381264 Jden_2106 Jonesia denitrificans DSM 20603 tRNA(Ile)-lysidine synthetase YP_003162046.1 2298986 R 471856 CDS YP_003162047.1 256833320 8381265 complement(2300011..2301123) 1 NC_013174.1 hypothetical protein 2301123 8381265 Jden_2107 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162047.1 2300011 R 471856 CDS YP_003162048.1 256833321 8381266 complement(2301108..2302538) 1 NC_013174.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: gbm:Gbem_3581 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; D-alanyl-D-alanine carboxypeptidase 2302538 8381266 Jden_2108 Jonesia denitrificans DSM 20603 D-alanyl-D-alanine carboxypeptidase YP_003162048.1 2301108 R 471856 CDS YP_003162049.1 256833322 8381267 2302777..2303289 1 NC_013174.1 PFAM: Inorganic pyrophosphatase; KEGG: gdj:Gdia_2890 inorganic diphosphatase; inorganic diphosphatase 2303289 8381267 Jden_2109 Jonesia denitrificans DSM 20603 inorganic diphosphatase YP_003162049.1 2302777 D 471856 CDS YP_003162050.1 256833323 8381268 complement(2303392..2304867) 1 NC_013174.1 PFAM: NLP/P60 protein; KEGG: bte:BTH_II0129 rhs element Vgr protein; NLP/P60 protein 2304867 8381268 Jden_2110 Jonesia denitrificans DSM 20603 NLP/P60 protein YP_003162050.1 2303392 R 471856 CDS YP_003162051.1 256833324 8381269 2305301..2306623 1 NC_013174.1 KEGG: bha:BH2603 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 2306623 8381269 Jden_2111 Jonesia denitrificans DSM 20603 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_003162051.1 2305301 D 471856 CDS YP_003162052.1 256833325 8381270 2306764..2308017 1 NC_013174.1 KEGG: azc:AZC_0229 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold protein; homoserine O-acetyltransferase 2308017 8381270 Jden_2112 Jonesia denitrificans DSM 20603 homoserine O-acetyltransferase YP_003162052.1 2306764 D 471856 CDS YP_003162053.1 256833326 8381271 2308050..2308781 1 NC_013174.1 hypothetical protein 2308781 8381271 Jden_2113 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162053.1 2308050 D 471856 CDS YP_003162054.1 256833327 8381272 2308869..2309846 1 NC_013174.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2170 putative oxidoreductase; Alcohol dehydrogenase zinc-binding domain-containing protein 2309846 8381272 Jden_2114 Jonesia denitrificans DSM 20603 Alcohol dehydrogenase zinc-binding domain-containing protein YP_003162054.1 2308869 D 471856 CDS YP_003162055.1 256833328 8381273 2309788..2310810 1 NC_013174.1 KEGG: abm:ABSDF1640 hypothetical protein; hypothetical protein 2310810 8381273 Jden_2115 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162055.1 2309788 D 471856 CDS YP_003162056.1 256833329 8381274 complement(2310807..2311106) 1 NC_013174.1 PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77; hypothetical protein 2311106 8381274 Jden_2116 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162056.1 2310807 R 471856 CDS YP_003162057.1 256833330 8381275 complement(2311160..2314081) 1 NC_013174.1 PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ank:AnaeK_0858 FAD linked oxidase domain protein; D-lactate dehydrogenase 2314081 8381275 Jden_2117 Jonesia denitrificans DSM 20603 D-lactate dehydrogenase YP_003162057.1 2311160 R 471856 CDS YP_003162058.1 256833331 8381276 2314289..2315068 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit; ABC transporter 2315068 8381276 Jden_2118 Jonesia denitrificans DSM 20603 ABC transporter YP_003162058.1 2314289 D 471856 CDS YP_003162059.1 256833332 8381277 2315068..2317689 1 NC_013174.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1658 hypothetical protein; hypothetical protein 2317689 8381277 Jden_2119 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162059.1 2315068 D 471856 CDS YP_003162060.1 256833333 8381278 2318014..2318970 1 NC_013174.1 KEGG: proteophosphoglycan 5; hypothetical protein 2318970 8381278 Jden_2120 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162060.1 2318014 D 471856 CDS YP_003162061.1 256833334 8381279 complement(2318927..2320309) 1 NC_013174.1 KEGG: mms:mma_1616 large exoproteins involved in heme utilization or adhesion; hypothetical protein 2320309 8381279 Jden_2121 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162061.1 2318927 R 471856 CDS YP_003162062.1 256833335 8381280 complement(2320379..2320921) 1 NC_013174.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pag:PLES_16511 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2320921 8381280 Jden_2122 Jonesia denitrificans DSM 20603 ECF subfamily RNA polymerase sigma-24 subunit YP_003162062.1 2320379 R 471856 CDS YP_003162063.1 256833336 8381281 complement(2321142..2322128) 1 NC_013174.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: hypothetical protein; LPXTG-motif cell wall anchor domain-containing protein 2322128 8381281 Jden_2123 Jonesia denitrificans DSM 20603 LPXTG-motif cell wall anchor domain-containing protein YP_003162063.1 2321142 R 471856 CDS YP_003162064.1 256833337 8381282 2322679..2323419 1 NC_013174.1 PFAM: YceI family protein; KEGG: ppr:PBPRB0399 hypothetical protein; hypothetical protein 2323419 8381282 Jden_2124 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162064.1 2322679 D 471856 CDS YP_003162065.1 256833338 8381283 2323584..2324678 1 NC_013174.1 PFAM: glycosyl hydrolase 53 domain protein; KEGG: sde:Sde_3710 arabinogalactan endo-1,4-beta- galactosidase; arabinogalactan endo-1,4-beta-galactosidase 2324678 8381283 Jden_2125 Jonesia denitrificans DSM 20603 arabinogalactan endo-1,4-beta-galactosidase YP_003162065.1 2323584 D 471856 CDS YP_003162066.1 256833339 8381816 2324963..2326150 1 NC_013174.1 PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; integrase family protein 2326150 8381816 Jden_2126 Jonesia denitrificans DSM 20603 integrase family protein YP_003162066.1 2324963 D 471856 CDS YP_003162067.1 256833340 8381285 complement(2326197..2326688) 1 NC_013174.1 hypothetical protein 2326688 8381285 Jden_2127 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162067.1 2326197 R 471856 CDS YP_003162068.1 256833341 8381286 complement(2326685..2327065) 1 NC_013174.1 PFAM: protein of unknown function DUF955; hypothetical protein 2327065 8381286 Jden_2128 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162068.1 2326685 R 471856 CDS YP_003162069.1 256833342 8381287 complement(2327074..2327502) 1 NC_013174.1 hypothetical protein 2327502 8381287 Jden_2129 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162069.1 2327074 R 471856 CDS YP_003162070.1 256833343 8381288 2327636..2327866 1 NC_013174.1 hypothetical protein 2327866 8381288 Jden_2130 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162070.1 2327636 D 471856 CDS YP_003162071.1 256833344 8381289 2327945..2328211 1 NC_013174.1 hypothetical protein 2328211 8381289 Jden_2131 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162071.1 2327945 D 471856 CDS YP_003162072.1 256833345 8381290 2328208..2328384 1 NC_013174.1 hypothetical protein 2328384 8381290 Jden_2132 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162072.1 2328208 D 471856 CDS YP_003162073.1 256833346 8381291 2328491..2329225 1 NC_013174.1 PFAM: phage antirepressor protein; BRO domain protein; KEGG: bcj:BCAM1879 hypothetical protein; phage antirepressor protein 2329225 8381291 Jden_2133 Jonesia denitrificans DSM 20603 phage antirepressor protein YP_003162073.1 2328491 D 471856 CDS YP_003162074.1 256833347 8381292 2329222..2329413 1 NC_013174.1 hypothetical protein 2329413 8381292 Jden_2134 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162074.1 2329222 D 471856 CDS YP_003162075.1 256833348 8381293 2329423..2329518 1 NC_013174.1 hypothetical protein 2329518 8381293 Jden_2135 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162075.1 2329423 D 471856 CDS YP_003162076.1 256833349 8381294 2329515..2330573 1 NC_013174.1 KEGG: hypothetical protein LOC690110; hypothetical protein 2330573 8381294 Jden_2136 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162076.1 2329515 D 471856 CDS YP_003162077.1 256833350 8381295 2330570..2330701 1 NC_013174.1 hypothetical protein 2330701 8381295 Jden_2137 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162077.1 2330570 D 471856 CDS YP_003162078.1 256833351 8381296 2330698..2330856 1 NC_013174.1 hypothetical protein 2330856 8381296 Jden_2138 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162078.1 2330698 D 471856 CDS YP_003162079.1 256833352 8381297 2330843..2330944 1 NC_013174.1 hypothetical protein 2330944 8381297 Jden_2139 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162079.1 2330843 D 471856 CDS YP_003162080.1 256833353 8381298 2330941..2331225 1 NC_013174.1 hypothetical protein 2331225 8381298 Jden_2140 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162080.1 2330941 D 471856 CDS YP_003162081.1 256833354 8381299 2331215..2331892 1 NC_013174.1 KEGG: rsq:Rsph17025_1818 hypothetical protein; hypothetical protein 2331892 8381299 Jden_2141 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162081.1 2331215 D 471856 CDS YP_003162082.1 256833355 8381300 2331892..2332425 1 NC_013174.1 KEGG: mex:Mext_4385 hypothetical protein; hypothetical protein 2332425 8381300 Jden_2142 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162082.1 2331892 D 471856 CDS YP_003162083.1 256833356 8381301 2332422..2332634 1 NC_013174.1 hypothetical protein 2332634 8381301 Jden_2143 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162083.1 2332422 D 471856 CDS YP_003162084.1 256833357 8381302 2332609..2332743 1 NC_013174.1 hypothetical protein 2332743 8381302 Jden_2144 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162084.1 2332609 D 471856 CDS YP_003162085.1 256833358 8381303 2332740..2332991 1 NC_013174.1 PFAM: glutaredoxin; KEGG: yen:YE0929 putative glutaredoxin; glutaredoxin 2332991 8381303 Jden_2145 Jonesia denitrificans DSM 20603 glutaredoxin YP_003162085.1 2332740 D 471856 CDS YP_003162086.1 256833359 8381304 2332993..2333406 1 NC_013174.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvm:DvMF_0813 single-strand binding protein; single-strand binding protein 2333406 8381304 Jden_2146 Jonesia denitrificans DSM 20603 single-strand binding protein YP_003162086.1 2332993 D 471856 CDS YP_003162087.1 256833360 8381305 2333524..2333877 1 NC_013174.1 hypothetical protein 2333877 8381305 Jden_2147 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162087.1 2333524 D 471856 CDS YP_003162088.1 256833361 8381306 2333874..2334338 1 NC_013174.1 KEGG: mag:amb2718 hypothetical protein; hypothetical protein 2334338 8381306 Jden_2148 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162088.1 2333874 D 471856 CDS YP_003162089.1 256833362 8381307 2334328..2334723 1 NC_013174.1 PFAM: endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 2334723 8381307 Jden_2149 Jonesia denitrificans DSM 20603 endodeoxyribonuclease RusA YP_003162089.1 2334328 D 471856 CDS YP_003162090.1 256833363 8381308 2334842..2335027 1 NC_013174.1 hypothetical protein 2335027 8381308 Jden_2150 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162090.1 2334842 D 471856 CDS YP_003162091.1 256833364 8381309 2335024..2335389 1 NC_013174.1 PFAM: transcription factor WhiB; transcription factor WhiB 2335389 8381309 Jden_2151 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003162091.1 2335024 D 471856 CDS YP_003162092.1 256833365 8381310 2335386..2335637 1 NC_013174.1 hypothetical protein 2335637 8381310 Jden_2152 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162092.1 2335386 D 471856 CDS YP_003162093.1 256833366 8381311 2335627..2336583 1 NC_013174.1 KEGG: bcb:BCB4264_A0982 DnaD domain protein; hypothetical protein 2336583 8381311 Jden_2153 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162093.1 2335627 D 471856 CDS YP_003162094.1 256833367 8381312 2336580..2336939 1 NC_013174.1 hypothetical protein 2336939 8381312 Jden_2154 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162094.1 2336580 D 471856 CDS YP_003162095.1 256833368 8381313 2336936..2338219 1 NC_013174.1 PFAM: DnaB domain protein helicase domain protein; KEGG: bba:Bd0038 hypothetical protein; DnaB domain-containing protein helicase domain-containing protein 2338219 8381313 Jden_2155 Jonesia denitrificans DSM 20603 DnaB domain-containing protein helicase domain-containing protein YP_003162095.1 2336936 D 471856 CDS YP_003162096.1 256833369 8381314 2338216..2338419 1 NC_013174.1 hypothetical protein 2338419 8381314 Jden_2156 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162096.1 2338216 D 471856 CDS YP_003162097.1 256833370 8381315 2338565..2338837 1 NC_013174.1 hypothetical protein 2338837 8381315 Jden_2157 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162097.1 2338565 D 471856 CDS YP_003162098.1 256833371 8381316 2338834..2339115 1 NC_013174.1 hypothetical protein 2339115 8381316 Jden_2158 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162098.1 2338834 D 471856 CDS YP_003162099.1 256833372 8381317 2339112..2339492 1 NC_013174.1 KEGG: oca:OCAR_5534 hypothetical protein; hypothetical protein 2339492 8381317 Jden_2159 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162099.1 2339112 D 471856 CDS YP_003162100.1 256833373 8381318 2339698..2340252 1 NC_013174.1 hypothetical protein 2340252 8381318 Jden_2160 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162100.1 2339698 D 471856 CDS YP_003162101.1 256833374 8381319 2340565..2340867 1 NC_013174.1 PFAM: HNH endonuclease; HNH endonuclease 2340867 8381319 Jden_2161 Jonesia denitrificans DSM 20603 HNH endonuclease YP_003162101.1 2340565 D 471856 CDS YP_003162102.1 256833375 8381320 2340947..2341699 1 NC_013174.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: Os07g0170200; hypothetical protein; HNH endonuclease 2341699 8381320 Jden_2162 Jonesia denitrificans DSM 20603 HNH endonuclease YP_003162102.1 2340947 D 471856 CDS YP_003162103.1 256833376 8381321 2341943..2342512 1 NC_013174.1 KEGG: bte:BTH_I3137 hypothetical protein; hypothetical protein 2342512 8381321 Jden_2163 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162103.1 2341943 D 471856 CDS YP_003162104.1 256833377 8381322 2342561..2342929 1 NC_013174.1 hypothetical protein 2342929 8381322 Jden_2164 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162104.1 2342561 D 471856 CDS YP_003162105.1 256833378 8381323 2342913..2344694 1 NC_013174.1 hypothetical protein 2344694 8381323 Jden_2165 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162105.1 2342913 D 471856 CDS YP_003162106.1 256833379 8381324 2344691..2346025 1 NC_013174.1 PFAM: protein of unknown function DUF1483; hypothetical protein 2346025 8381324 Jden_2166 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162106.1 2344691 D 471856 CDS YP_003162107.1 256833380 8381325 2346025..2346795 1 NC_013174.1 hypothetical protein 2346795 8381325 Jden_2167 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162107.1 2346025 D 471856 CDS YP_003162108.1 256833381 8381326 2346872..2347399 1 NC_013174.1 KEGG: bvi:Bcep1808_1466 translation initiation factor IF-2; hypothetical protein 2347399 8381326 Jden_2168 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162108.1 2346872 D 471856 CDS YP_003162109.1 256833382 8381327 2347402..2348364 1 NC_013174.1 PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein; major capsid protein HK97 2348364 8381327 Jden_2169 Jonesia denitrificans DSM 20603 major capsid protein HK97 YP_003162109.1 2347402 D 471856 CDS YP_003162110.1 256833383 8381328 2348387..2348812 1 NC_013174.1 hypothetical protein 2348812 8381328 Jden_2170 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162110.1 2348387 D 471856 CDS YP_003162111.1 256833384 8381329 2348812..2349261 1 NC_013174.1 hypothetical protein 2349261 8381329 Jden_2171 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162111.1 2348812 D 471856 CDS YP_003162112.1 256833385 8381330 2349258..2349635 1 NC_013174.1 hypothetical protein 2349635 8381330 Jden_2172 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162112.1 2349258 D 471856 CDS YP_003162113.1 256833386 8381331 2349632..2350045 1 NC_013174.1 hypothetical protein 2350045 8381331 Jden_2173 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162113.1 2349632 D 471856 CDS YP_003162114.1 256833387 8381332 2350130..2350657 1 NC_013174.1 hypothetical protein 2350657 8381332 Jden_2174 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162114.1 2350130 D 471856 CDS YP_003162115.1 256833388 8381333 2350805..2351521 1 NC_013174.1 hypothetical protein 2351521 8381333 Jden_2175 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162115.1 2350805 D 471856 CDS YP_003162116.1 256833389 8381334 2351569..2351832 1 NC_013174.1 hypothetical protein 2351832 8381334 Jden_2176 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162116.1 2351569 D 471856 CDS YP_003162117.1 256833390 8381335 complement(2351829..2352119) 1 NC_013174.1 hypothetical protein 2352119 8381335 Jden_2177 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162117.1 2351829 R 471856 CDS YP_003162118.1 256833391 8381336 2352155..2356183 1 NC_013174.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dno:DNO_0755 phage tail tape measure family protein; phage tail tape measure protein, TP901 family 2356183 8381336 Jden_2178 Jonesia denitrificans DSM 20603 phage tail tape measure protein, TP901 family YP_003162118.1 2352155 D 471856 CDS YP_003162119.1 256833392 8381337 2356183..2358108 1 NC_013174.1 hypothetical protein 2358108 8381337 Jden_2179 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162119.1 2356183 D 471856 CDS YP_003162120.1 256833393 8381338 2358108..2359280 1 NC_013174.1 hypothetical protein 2359280 8381338 Jden_2180 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162120.1 2358108 D 471856 CDS YP_003162121.1 256833394 8381339 2359277..2360065 1 NC_013174.1 hypothetical protein 2360065 8381339 Jden_2181 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162121.1 2359277 D 471856 CDS YP_003162122.1 256833395 8381340 2360062..2360226 1 NC_013174.1 hypothetical protein 2360226 8381340 Jden_2182 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162122.1 2360062 D 471856 CDS YP_003162123.1 256833396 8381341 2360216..2360770 1 NC_013174.1 KEGG: bmj:BMULJ_00702 collagen alpha chain precursor; hypothetical protein 2360770 8381341 Jden_2183 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162123.1 2360216 D 471856 CDS YP_003162124.1 256833397 8381342 2360770..2361072 1 NC_013174.1 hypothetical protein 2361072 8381342 Jden_2184 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162124.1 2360770 D 471856 CDS YP_003162125.1 256833398 8381343 2361137..2361976 1 NC_013174.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2361976 8381343 Jden_2185 Jonesia denitrificans DSM 20603 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_003162125.1 2361137 D 471856 CDS YP_003162126.1 256833399 8381344 2361988..2362203 1 NC_013174.1 hypothetical protein 2362203 8381344 Jden_2186 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162126.1 2361988 D 471856 CDS YP_003162127.1 256833400 8381345 2362190..2362426 1 NC_013174.1 hypothetical protein 2362426 8381345 Jden_2187 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162127.1 2362190 D 471856 CDS YP_003162128.1 256833401 8381346 2362413..2363561 1 NC_013174.1 hypothetical protein 2363561 8381346 Jden_2188 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162128.1 2362413 D 471856 CDS YP_003162129.1 256833402 8381347 2363545..2363688 1 NC_013174.1 hypothetical protein 2363688 8381347 Jden_2189 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162129.1 2363545 D 471856 CDS YP_003162130.1 256833403 8381348 complement(2363739..2364338) 1 NC_013174.1 hypothetical protein 2364338 8381348 Jden_2190 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162130.1 2363739 R 471856 CDS YP_003162131.1 256833404 8381349 complement(2364375..2364710) 1 NC_013174.1 hypothetical protein 2364710 8381349 Jden_2191 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162131.1 2364375 R 471856 CDS YP_003162132.1 256833405 8381817 complement(2365206..2366762) 1 NC_013174.1 PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: hypothetical protein; TAP domain-containing protein 2366762 8381817 Jden_2192 Jonesia denitrificans DSM 20603 TAP domain-containing protein YP_003162132.1 2365206 R 471856 CDS YP_003162133.1 256833406 8381351 complement(2366759..2367916) 1 NC_013174.1 SMART: AAA ATPase; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase 2367916 8381351 Jden_2193 Jonesia denitrificans DSM 20603 DNA-directed DNA polymerase YP_003162133.1 2366759 R 471856 CDS YP_003162134.1 256833407 8381352 complement(2367913..2368578) 1 NC_013174.1 KEGG: gur:Gura_3153 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 2368578 8381352 Jden_2194 Jonesia denitrificans DSM 20603 thymidylate kinase YP_003162134.1 2367913 R 471856 CDS YP_003162135.1 256833408 8381353 2368633..2369307 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pde:Pden_4839 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 2369307 8381353 Jden_2195 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003162135.1 2368633 D 471856 CDS YP_003162136.1 256833409 8381354 complement(2369389..2370438) 1 NC_013174.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: xca:xccb100_2335 GFO/IDH/MocA family oxidoreductase; oxidoreductase domain-containing protein 2370438 8381354 Jden_2196 Jonesia denitrificans DSM 20603 oxidoreductase domain-containing protein YP_003162136.1 2369389 R 471856 CDS YP_003162137.1 256833410 8381355 complement(2370472..2373243) 1 NC_013174.1 KEGG: bba:Bd0964 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I 2373243 8381355 Jden_2197 Jonesia denitrificans DSM 20603 DNA topoisomerase I YP_003162137.1 2370472 R 471856 CDS YP_003162138.1 256833411 8381356 complement(2373353..2374255) 1 NC_013174.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: bav:BAV1037 membrane-associated phosphatase; PA-phosphatase like phosphoesterase 2374255 8381356 Jden_2198 Jonesia denitrificans DSM 20603 PA-phosphatase like phosphoesterase YP_003162138.1 2373353 R 471856 CDS YP_003162139.1 256833412 8381357 complement(2374359..2375477) 1 NC_013174.1 PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: aeh:Mlg_1707 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 2375477 8381357 Jden_2199 Jonesia denitrificans DSM 20603 uroporphyrinogen III synthase HEM4 YP_003162139.1 2374359 R 471856 CDS YP_003162140.1 256833413 8381358 complement(2375474..2376259) 1 NC_013174.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: yen:YE2748 putative uroporphyrin-III C- methyltransferase; uroporphyrin-III C-methyltransferase 2376259 8381358 Jden_2200 Jonesia denitrificans DSM 20603 uroporphyrin-III C-methyltransferase YP_003162140.1 2375474 R 471856 CDS YP_003162141.1 256833414 8381359 complement(2376256..2378868) 1 NC_013174.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; KEGG: rso:RSp1222 nitrite reductase NADPH large subunit; nitrite reductase (NAD(P)H) large subunit 2378868 8381359 Jden_2201 Jonesia denitrificans DSM 20603 nitrite reductase (NAD(P)H) large subunit YP_003162141.1 2376256 R 471856 CDS YP_003162142.1 256833415 8381360 2379181..2379555 1 NC_013174.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: prw:PsycPRwf_1553 nitrite reductase (NAD(P)H), small subunit; Rieske (2Fe-2S) domain-containing protein 2379555 8381360 Jden_2202 Jonesia denitrificans DSM 20603 Rieske (2Fe-2S) domain-containing protein YP_003162142.1 2379181 D 471856 CDS YP_003162143.1 256833416 8381361 complement(2379552..2380745) 1 NC_013174.1 PFAM: protein of unknown function UPF0118; KEGG: mxa:MXAN_7270 hypothetical protein; hypothetical protein 2380745 8381361 Jden_2203 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162143.1 2379552 R 471856 CDS YP_003162144.1 256833417 8381362 complement(2380786..2382396) 1 NC_013174.1 PFAM: methyltransferase small; KEGG: sus:Acid_0229 methyltransferase small; methyltransferase small 2382396 8381362 Jden_2204 Jonesia denitrificans DSM 20603 methyltransferase small YP_003162144.1 2380786 R 471856 CDS YP_003162145.1 256833418 8381363 complement(2382398..2383180) 1 NC_013174.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_4045 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2383180 8381363 Jden_2205 Jonesia denitrificans DSM 20603 endonuclease/exonuclease/phosphatase YP_003162145.1 2382398 R 471856 CDS YP_003162146.1 256833419 8381364 complement(2383177..2383875) 1 NC_013174.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3515 ribonucleoside-triphosphate reductase, anaerobic-like; anaerobic ribonucleoside-triphosphate reductase activating protein 2383875 8381364 Jden_2206 Jonesia denitrificans DSM 20603 anaerobic ribonucleoside-triphosphate reductase activating protein YP_003162146.1 2383177 R 471856 CDS YP_003162147.1 256833420 8381365 complement(2383872..2385782) 1 NC_013174.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: mmr:Mmar10_0305 anaerobic ribonucleoside triphosphate reductase; anaerobic ribonucleoside-triphosphate reductase 2385782 8381365 Jden_2207 Jonesia denitrificans DSM 20603 anaerobic ribonucleoside-triphosphate reductase YP_003162147.1 2383872 R 471856 CDS YP_003162148.1 256833421 8381366 complement(2386533..2387633) 1 NC_013174.1 PFAM: PfkB domain protein; KEGG: scl:sce5155 putative 2-dehydro-3- deoxygluconokinase; PfkB domain-containing protein 2387633 8381366 Jden_2208 Jonesia denitrificans DSM 20603 PfkB domain-containing protein YP_003162148.1 2386533 R 471856 CDS YP_003162149.1 256833422 8381367 complement(2387630..2388277) 1 NC_013174.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: ppr:PBPRB1732 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 2388277 8381367 Jden_2209 Jonesia denitrificans DSM 20603 2-dehydro-3-deoxyphosphogluconate aldolase YP_003162149.1 2387630 R 471856 CDS YP_003162150.1 256833423 8381368 complement(2388388..2389209) 1 NC_013174.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: azc:AZC_3198 putative transcriptional regulator; transcriptional regulator, IclR family 2389209 8381368 Jden_2210 Jonesia denitrificans DSM 20603 transcriptional regulator, IclR family YP_003162150.1 2388388 R 471856 CDS YP_003162151.1 256833424 8381369 complement(2389233..2390477) 1 NC_013174.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: aba:Acid345_1701 galactokinase; galactokinase 2390477 8381369 Jden_2211 Jonesia denitrificans DSM 20603 galactokinase YP_003162151.1 2389233 R 471856 CDS YP_003162152.1 256833425 8381370 complement(2390474..2391745) 1 NC_013174.1 KEGG: gbm:Gbem_4017 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 2391745 8381370 Jden_2212 Jonesia denitrificans DSM 20603 galactose-1-phosphate uridylyltransferase YP_003162152.1 2390474 R 471856 CDS YP_003162153.1 256833426 8381371 2391937..2393208 1 NC_013174.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0002798 probable transcriptional regulator protein, ROK family; ROK family protein 2393208 8381371 Jden_2213 Jonesia denitrificans DSM 20603 ROK family protein YP_003162153.1 2391937 D 471856 CDS YP_003162154.1 256833427 8381372 2393350..2394648 1 NC_013174.1 PFAM: SCP-like extracellular; KEGG: hypothetical protein; hypothetical protein 2394648 8381372 Jden_2214 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162154.1 2393350 D 471856 CDS YP_003162155.1 256833428 8381819 complement(2394932..2395465) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2951 acetyltransferase; N-acetyltransferase GCN5 2395465 8381819 Jden_2215 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003162155.1 2394932 R 471856 CDS YP_003162156.1 256833429 8381823 complement(2401561..2401803) 1 NC_013174.1 hypothetical protein 2401803 8381823 Jden_2216 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162156.1 2401561 R 471856 CDS YP_003162157.1 256833430 8381375 complement(2401803..2403086) 1 NC_013174.1 PFAM: phosphate transporter; KEGG: glo:Glov_0587 phosphate transporter; phosphate transporter 2403086 8381375 Jden_2217 Jonesia denitrificans DSM 20603 phosphate transporter YP_003162157.1 2401803 R 471856 CDS YP_003162158.1 256833431 8381376 2403234..2405819 1 NC_013174.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: sfu:Sfum_1698 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2405819 8381376 Jden_2218 Jonesia denitrificans DSM 20603 DEAD/DEAH box helicase YP_003162158.1 2403234 D 471856 CDS YP_003162159.1 256833432 8381377 complement(2405830..2407140) 1 NC_013174.1 PFAM: aminotransferase class I and II; KEGG: mpo:Mpop_0649 putative transcriptional regulator, GntR family; GntR family transcriptional regulator 2407140 8381377 Jden_2219 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003162159.1 2405830 R 471856 CDS YP_003162160.1 256833433 8381378 complement(2407301..2407726) 1 NC_013174.1 hypothetical protein 2407726 8381378 Jden_2220 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162160.1 2407301 R 471856 CDS YP_003162161.1 256833434 8381379 complement(2407723..2408196) 1 NC_013174.1 PFAM: TadE family protein; TadE family protein 2408196 8381379 Jden_2221 Jonesia denitrificans DSM 20603 TadE family protein YP_003162161.1 2407723 R 471856 CDS YP_003162162.1 256833435 8381380 complement(2408202..2408420) 1 NC_013174.1 hypothetical protein 2408420 8381380 Jden_2222 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162162.1 2408202 R 471856 CDS YP_003162163.1 256833436 8381381 complement(2408568..2409818) 1 NC_013174.1 PFAM: type II secretion system protein; KEGG: nar:Saro_1524 type II secretion system protein; type II secretion system protein 2409818 8381381 Jden_2223 Jonesia denitrificans DSM 20603 type II secretion system protein YP_003162163.1 2408568 R 471856 CDS YP_003162164.1 256833437 8381382 complement(2409809..2410969) 1 NC_013174.1 PFAM: type II secretion system protein E; KEGG: csa:Csal_1659 type II secretion system protein E; type II secretion system protein E 2410969 8381382 Jden_2224 Jonesia denitrificans DSM 20603 type II secretion system protein E YP_003162164.1 2409809 R 471856 CDS YP_003162165.1 256833438 8381383 complement(2410966..2411763) 1 NC_013174.1 KEGG: vvy:VV1260 Mrp protein; hypothetical protein 2411763 8381383 Jden_2225 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162165.1 2410966 R 471856 CDS YP_003162166.1 256833439 8381384 2411952..2412800 1 NC_013174.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: ppf:Pput_3998 HAD family hydrolase; HAD-superfamily hydrolase 2412800 8381384 Jden_2226 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003162166.1 2411952 D 471856 CDS YP_003162167.1 256833440 8381385 2413377..2414246 1 NC_013174.1 PFAM: formate/nitrite transporter; KEGG: spe:Spro_4597 nitrite transporter NirC; formate/nitrite transporter 2414246 8381385 Jden_2227 Jonesia denitrificans DSM 20603 formate/nitrite transporter YP_003162167.1 2413377 D 471856 CDS YP_003162168.1 256833441 8381386 2414505..2415716 1 NC_013174.1 PFAM: glycoside hydrolase family 5; Dockerin cellulose-binding family V; KEGG: cja:CJA_3338 endo-1,4-beta-mannanase man5A; glycoside hydrolase family protein 2415716 8381386 Jden_2228 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003162168.1 2414505 D 471856 CDS YP_003162169.1 256833442 8381387 2415928..2417334 1 NC_013174.1 PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: sde:Sde_0064 putative secreted beta- mannosidase; glycoside hydrolase family protein 2417334 8381387 Jden_2229 Jonesia denitrificans DSM 20603 glycoside hydrolase family protein YP_003162169.1 2415928 D 471856 CDS YP_003162170.1 256833443 8381388 2417473..2419515 1 NC_013174.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: aba:Acid345_3520 acetyl-coenzyme A synthetase; acetate/CoA ligase 2419515 8381388 Jden_2230 Jonesia denitrificans DSM 20603 acetate/CoA ligase YP_003162170.1 2417473 D 471856 CDS YP_003162171.1 256833444 8381389 2419574..2420452 1 NC_013174.1 hypothetical protein 2420452 8381389 Jden_2231 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162171.1 2419574 D 471856 CDS YP_003162172.1 256833445 8381390 complement(2420456..2421379) 1 NC_013174.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1337 MCP-domain-containing signal transduction protein; methyl-accepting chemotaxis sensory transducer 2421379 8381390 Jden_2232 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer YP_003162172.1 2420456 R 471856 CDS YP_003162173.1 256833446 8381391 complement(2421376..2421909) 1 NC_013174.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: pzu:PHZ_c0444 aerotaxis receptor; putative PAS/PAC sensor protein 2421909 8381391 Jden_2233 Jonesia denitrificans DSM 20603 putative PAS/PAC sensor protein YP_003162173.1 2421376 R 471856 CDS YP_003162174.1 256833447 8381392 2422051..2422995 1 NC_013174.1 TIGRFAM: mycothiol biosynthesis acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: csa:Csal_2525 GCN5-related N- acetyltransferase; mycothiol biosynthesis acetyltransferase 2422995 8381392 Jden_2234 Jonesia denitrificans DSM 20603 mycothiol biosynthesis acetyltransferase YP_003162174.1 2422051 D 471856 CDS YP_003162175.1 256833448 8381393 2423011..2425311 1 NC_013174.1 PFAM: Polyphosphate kinase; KEGG: mxa:MXAN_0056 polyphosphate kinase; polyphosphate kinase 2425311 8381393 Jden_2235 Jonesia denitrificans DSM 20603 polyphosphate kinase YP_003162175.1 2423011 D 471856 CDS YP_003162176.1 256833449 8381394 2425315..2426385 1 NC_013174.1 PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; NUDIX hydrolase 2426385 8381394 Jden_2236 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003162176.1 2425315 D 471856 CDS YP_003162177.1 256833450 8381824 complement(2427409..2428029) 1 NC_013174.1 PFAM: protein of unknown function DUF47; KEGG: aba:Acid345_3130 protein of unknown function DUF47; hypothetical protein 2428029 8381824 Jden_2238 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162177.1 2427409 R 471856 CDS YP_003162178.1 256833451 8381396 complement(2428550..2429209) 1 NC_013174.1 hypothetical protein 2429209 8381396 Jden_2239 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162178.1 2428550 R 471856 CDS YP_003162179.1 256833452 8381397 complement(2429202..2429639) 1 NC_013174.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rme:Rmet_1865 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2429639 8381397 Jden_2240 Jonesia denitrificans DSM 20603 methionine-R-sulfoxide reductase YP_003162179.1 2429202 R 471856 CDS YP_003162180.1 256833453 8381398 2429782..2430471 1 NC_013174.1 KEGG: mxa:MXAN_2497 hypothetical protein; hypothetical protein 2430471 8381398 Jden_2241 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162180.1 2429782 D 471856 CDS YP_003162181.1 256833454 8381399 2430652..2431587 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 putative permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 2431587 8381399 Jden_2242 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162181.1 2430652 D 471856 CDS YP_003162182.1 256833455 8381400 2431587..2432510 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_0638 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2432510 8381400 Jden_2243 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162182.1 2431587 D 471856 CDS YP_003162183.1 256833456 8381401 2432620..2433987 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1079 glycerol-3-phosphate ABC transporter (glycerol-3-phosphate binding protein); extracellular solute-binding protein 2433987 8381401 Jden_2244 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003162183.1 2432620 D 471856 CDS YP_003162184.1 256833457 8381402 2433984..2434826 1 NC_013174.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bsu:BSU09620 hypothetical protein; Glycerophosphodiester phosphodiesterase 2434826 8381402 Jden_2245 Jonesia denitrificans DSM 20603 Glycerophosphodiester phosphodiesterase YP_003162184.1 2433984 D 471856 CDS YP_003162185.1 256833458 8381826 2436220..2436498 1 NC_013174.1 hypothetical protein 2436498 8381826 Jden_2247 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162185.1 2436220 D 471856 CDS YP_003162186.1 256833459 8381404 2436676..2438241 1 NC_013174.1 PFAM: N-6 DNA methylase; KEGG: afr:AFE_2793 type I restriction-modification system, M subunit; N-6 DNA methylase 2438241 8381404 Jden_2248 Jonesia denitrificans DSM 20603 N-6 DNA methylase YP_003162186.1 2436676 D 471856 CDS YP_003162187.1 256833460 8381405 2438238..2439392 1 NC_013174.1 PFAM: restriction modification system DNA specificity domain; KEGG: rfr:Rfer_0030 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2439392 8381405 Jden_2249 Jonesia denitrificans DSM 20603 restriction modification system DNA specificity domain-containing protein YP_003162187.1 2438238 D 471856 CDS YP_003162188.1 256833461 8381406 2439389..2440129 1 NC_013174.1 KEGG: bbt:BBta_3620 hypothetical protein; hypothetical protein 2440129 8381406 Jden_2250 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162188.1 2439389 D 471856 CDS YP_003162189.1 256833462 8381407 2440126..2443260 1 NC_013174.1 KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 2443260 8381407 Jden_2251 Jonesia denitrificans DSM 20603 HsdR family type I site-specific deoxyribonuclease YP_003162189.1 2440126 D 471856 CDS YP_003162190.1 256833463 8381408 2443260..2443391 1 NC_013174.1 hypothetical protein 2443391 8381408 Jden_2252 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162190.1 2443260 D 471856 CDS YP_003162191.1 256833464 8381409 2443391..2444635 1 NC_013174.1 KEGG: cell division cycle protein 48; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Microtubule-severing ATPase 2444635 8381409 Jden_2253 Jonesia denitrificans DSM 20603 Microtubule-severing ATPase YP_003162191.1 2443391 D 471856 CDS YP_003162192.1 256833465 8381410 2444625..2446019 1 NC_013174.1 hypothetical protein 2446019 8381410 Jden_2254 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162192.1 2444625 D 471856 CDS YP_003162193.1 256833466 8381411 2446041..2446469 1 NC_013174.1 hypothetical protein 2446469 8381411 Jden_2255 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162193.1 2446041 D 471856 CDS YP_003162194.1 256833467 8381412 complement(2446537..2446923) 1 NC_013174.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase ArsC; K03741 arsenate reductase; protein-tyrosine phosphatase 2446923 8381412 Jden_2256 Jonesia denitrificans DSM 20603 protein-tyrosine phosphatase YP_003162194.1 2446537 R 471856 CDS YP_003162195.1 256833468 8381413 complement(2446949..2448037) 1 NC_013174.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bca:BCE_5383 membrane-bound transcriptional regulator LytR; cell envelope-related transcriptional attenuator 2448037 8381413 Jden_2257 Jonesia denitrificans DSM 20603 cell envelope-related transcriptional attenuator YP_003162195.1 2446949 R 471856 CDS YP_003162196.1 256833469 8381414 2448302..2449114 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: proline/glycine betaine ABC transporter; ABC transporter 2449114 8381414 Jden_2258 Jonesia denitrificans DSM 20603 ABC transporter YP_003162196.1 2448302 D 471856 CDS YP_003162197.1 256833470 8381415 2449111..2449773 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: proline/glycine betaine ABC transporter; K05846 osmoprotectant transport system permease protein; binding-protein-dependent transport system inner membrane protein 2449773 8381415 Jden_2259 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162197.1 2449111 D 471856 CDS YP_003162198.1 256833471 8381416 2449751..2450434 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter; K05846 osmoprotectant transport system permease protein; binding-protein-dependent transport system inner membrane protein 2450434 8381416 Jden_2260 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162198.1 2449751 D 471856 CDS YP_003162199.1 256833472 8381417 2450441..2451361 1 NC_013174.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine); glycine/betaine ABC transporter substrate-binding protein 2451361 8381417 Jden_2261 Jonesia denitrificans DSM 20603 glycine/betaine ABC transporter substrate-binding protein YP_003162199.1 2450441 D 471856 CDS YP_003162200.1 256833473 8381418 2451530..2452516 1 NC_013174.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter 2452516 8381418 Jden_2262 Jonesia denitrificans DSM 20603 CaCA family Na+/Ca+ antiporter YP_003162200.1 2451530 D 471856 CDS YP_003162201.1 256833474 8381419 complement(2452479..2453180) 1 NC_013174.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: scl:sce8455 putative NAD(P)H dehydrogenase; NAD(P)H dehydrogenase (quinone) 2453180 8381419 Jden_2263 Jonesia denitrificans DSM 20603 NAD(P)H dehydrogenase (quinone) YP_003162201.1 2452479 R 471856 CDS YP_003162202.1 256833475 8381420 complement(2453177..2453653) 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mes:Meso_2463 transcriptional regulator, MarR family; transcriptional regulator, MarR family 2453653 8381420 Jden_2264 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003162202.1 2453177 R 471856 CDS YP_003162203.1 256833476 8381421 2453864..2455417 1 NC_013174.1 TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: vvy:VVA0812 NAD(P) transhydrogenase subunit alpha; NAD(P) transhydrogenase subunit alpha 2455417 8381421 Jden_2265 Jonesia denitrificans DSM 20603 NAD(P) transhydrogenase subunit alpha YP_003162203.1 2453864 D 471856 CDS YP_003162204.1 256833477 8381422 2455420..2456808 1 NC_013174.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: hap:HAPS_2212 NAD(P) transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 2456808 8381422 Jden_2266 Jonesia denitrificans DSM 20603 NAD(P)(+) transhydrogenase YP_003162204.1 2455420 D 471856 CDS YP_003162205.1 256833478 8381423 2457042..2457788 1 NC_013174.1 KEGG: low complexity orf similar to C. albicans HYR1 protein; hypothetical protein 2457788 8381423 Jden_2267 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162205.1 2457042 D 471856 CDS YP_003162206.1 256833479 8381424 complement(2457994..2458980) 1 NC_013174.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 2458980 8381424 Jden_2268 Jonesia denitrificans DSM 20603 UDP-glucose 4-epimerase YP_003162206.1 2457994 R 471856 CDS YP_003162207.1 256833480 8381425 complement(2459063..2459401) 1 NC_013174.1 PFAM: protein of unknown function DUF1025; KEGG: mxa:MXAN_4469 tetratricopeptide repeat protein; hypothetical protein 2459401 8381425 Jden_2269 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162207.1 2459063 R 471856 CDS YP_003162208.1 256833481 8381830 complement(2460115..2460480) 1 NC_013174.1 PFAM: protein of unknown function DUF955; hypothetical protein 2460480 8381830 Jden_2270 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162208.1 2460115 R 471856 CDS YP_003162209.1 256833482 8381427 complement(2460491..2460916) 1 NC_013174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A2209 putative DNA-binding protein; XRE family transcriptional regulator 2460916 8381427 Jden_2271 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003162209.1 2460491 R 471856 CDS YP_003162210.1 256833483 8381428 2461048..2461254 1 NC_013174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rme:Rmet_4110 transcriptional regulator, XRE family with cupin sensor domain; XRE family transcriptional regulator 2461254 8381428 Jden_2272 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003162210.1 2461048 D 471856 CDS YP_003162211.1 256833484 8381429 2461339..2461605 1 NC_013174.1 hypothetical protein 2461605 8381429 Jden_2273 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162211.1 2461339 D 471856 CDS YP_003162212.1 256833485 8381430 2461602..2461778 1 NC_013174.1 hypothetical protein 2461778 8381430 Jden_2274 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162212.1 2461602 D 471856 CDS YP_003162213.1 256833486 8381431 2461885..2462655 1 NC_013174.1 PFAM: phage antirepressor protein; KEGG: btr:Btr_0998 hypothetical protein; phage antirepressor protein 2462655 8381431 Jden_2275 Jonesia denitrificans DSM 20603 phage antirepressor protein YP_003162213.1 2461885 D 471856 CDS YP_003162214.1 256833487 8381432 2462652..2462855 1 NC_013174.1 hypothetical protein 2462855 8381432 Jden_2276 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162214.1 2462652 D 471856 CDS YP_003162215.1 256833488 8381433 2462865..2462960 1 NC_013174.1 hypothetical protein 2462960 8381433 Jden_2277 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162215.1 2462865 D 471856 CDS YP_003162216.1 256833489 8381434 2462957..2463976 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2463976 8381434 Jden_2278 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162216.1 2462957 D 471856 CDS YP_003162217.1 256833490 8381435 2463973..2464107 1 NC_013174.1 hypothetical protein 2464107 8381435 Jden_2279 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162217.1 2463973 D 471856 CDS YP_003162218.1 256833491 8381436 2464202..2464483 1 NC_013174.1 hypothetical protein 2464483 8381436 Jden_2280 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162218.1 2464202 D 471856 CDS YP_003162219.1 256833492 8381437 2464476..2465324 1 NC_013174.1 KEGG: pmr:PMI0468 phage-related exonuclease; hypothetical protein 2465324 8381437 Jden_2281 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162219.1 2464476 D 471856 CDS YP_003162220.1 256833493 8381438 2465317..2465958 1 NC_013174.1 KEGG: pde:Pden_3738 transcriptional regulator, fis family; hypothetical protein 2465958 8381438 Jden_2282 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162220.1 2465317 D 471856 CDS YP_003162221.1 256833494 8381439 2465955..2466167 1 NC_013174.1 hypothetical protein 2466167 8381439 Jden_2283 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162221.1 2465955 D 471856 CDS YP_003162222.1 256833495 8381440 2466142..2466276 1 NC_013174.1 hypothetical protein 2466276 8381440 Jden_2284 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162222.1 2466142 D 471856 CDS YP_003162223.1 256833496 8381441 2466273..2466524 1 NC_013174.1 PFAM: glutaredoxin; KEGG: yen:YE0929 putative glutaredoxin; glutaredoxin 2466524 8381441 Jden_2285 Jonesia denitrificans DSM 20603 glutaredoxin YP_003162223.1 2466273 D 471856 CDS YP_003162224.1 256833497 8381442 2466526..2466939 1 NC_013174.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvm:DvMF_0813 single-strand binding protein; single-strand binding protein 2466939 8381442 Jden_2286 Jonesia denitrificans DSM 20603 single-strand binding protein YP_003162224.1 2466526 D 471856 CDS YP_003162225.1 256833498 8381443 2467057..2467410 1 NC_013174.1 hypothetical protein 2467410 8381443 Jden_2287 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162225.1 2467057 D 471856 CDS YP_003162226.1 256833499 8381444 2467407..2467871 1 NC_013174.1 KEGG: mag:amb2718 hypothetical protein; hypothetical protein 2467871 8381444 Jden_2288 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162226.1 2467407 D 471856 CDS YP_003162227.1 256833500 8381445 2467861..2468256 1 NC_013174.1 PFAM: endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 2468256 8381445 Jden_2289 Jonesia denitrificans DSM 20603 endodeoxyribonuclease RusA YP_003162227.1 2467861 D 471856 CDS YP_003162228.1 256833501 8381446 2468375..2468560 1 NC_013174.1 hypothetical protein 2468560 8381446 Jden_2290 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162228.1 2468375 D 471856 CDS YP_003162229.1 256833502 8381447 2468557..2468922 1 NC_013174.1 PFAM: transcription factor WhiB; transcription factor WhiB 2468922 8381447 Jden_2291 Jonesia denitrificans DSM 20603 transcription factor WhiB YP_003162229.1 2468557 D 471856 CDS YP_003162230.1 256833503 8381448 2468919..2469170 1 NC_013174.1 hypothetical protein 2469170 8381448 Jden_2292 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162230.1 2468919 D 471856 CDS YP_003162231.1 256833504 8381449 2469160..2470116 1 NC_013174.1 KEGG: bcb:BCB4264_A0982 DnaD domain protein; hypothetical protein 2470116 8381449 Jden_2293 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162231.1 2469160 D 471856 CDS YP_003162232.1 256833505 8381450 2470113..2470472 1 NC_013174.1 hypothetical protein 2470472 8381450 Jden_2294 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162232.1 2470113 D 471856 CDS YP_003162233.1 256833506 8381451 2470469..2471752 1 NC_013174.1 PFAM: DnaB domain protein helicase domain protein; KEGG: bba:Bd0038 hypothetical protein; DnaB domain-containing protein helicase domain-containing protein 2471752 8381451 Jden_2295 Jonesia denitrificans DSM 20603 DnaB domain-containing protein helicase domain-containing protein YP_003162233.1 2470469 D 471856 CDS YP_003162234.1 256833507 8381452 2471749..2471952 1 NC_013174.1 hypothetical protein 2471952 8381452 Jden_2296 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162234.1 2471749 D 471856 CDS YP_003162235.1 256833508 8381453 2472098..2472370 1 NC_013174.1 hypothetical protein 2472370 8381453 Jden_2297 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162235.1 2472098 D 471856 CDS YP_003162236.1 256833509 8381454 2472367..2472648 1 NC_013174.1 hypothetical protein 2472648 8381454 Jden_2298 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162236.1 2472367 D 471856 CDS YP_003162237.1 256833510 8381455 2472645..2473025 1 NC_013174.1 KEGG: oca:OCAR_5534 hypothetical protein; hypothetical protein 2473025 8381455 Jden_2299 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162237.1 2472645 D 471856 CDS YP_003162238.1 256833511 8381456 2473022..2473186 1 NC_013174.1 hypothetical protein 2473186 8381456 Jden_2300 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162238.1 2473022 D 471856 CDS YP_003162239.1 256833512 8381457 2473183..2473386 1 NC_013174.1 hypothetical protein 2473386 8381457 Jden_2301 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162239.1 2473183 D 471856 CDS YP_003162240.1 256833513 8381458 2473438..2473965 1 NC_013174.1 hypothetical protein 2473965 8381458 Jden_2302 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162240.1 2473438 D 471856 CDS YP_003162241.1 256833514 8381459 2473962..2474144 1 NC_013174.1 hypothetical protein 2474144 8381459 Jden_2303 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162241.1 2473962 D 471856 CDS YP_003162242.1 256833515 8381460 2474430..2474747 1 NC_013174.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pne:Pnec_0889 HNH endonuclease; HNH endonuclease 2474747 8381460 Jden_2304 Jonesia denitrificans DSM 20603 HNH endonuclease YP_003162242.1 2474430 D 471856 CDS YP_003162243.1 256833516 8381461 2474905..2475123 1 NC_013174.1 hypothetical protein 2475123 8381461 Jden_2305 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162243.1 2474905 D 471856 CDS YP_003162244.1 256833517 8381462 2475125..2476549 1 NC_013174.1 hypothetical protein 2476549 8381462 Jden_2306 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162244.1 2475125 D 471856 CDS YP_003162245.1 256833518 8381463 2476546..2477967 1 NC_013174.1 PFAM: protein of unknown function DUF1483; hypothetical protein 2477967 8381463 Jden_2307 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162245.1 2476546 D 471856 CDS YP_003162246.1 256833519 8381464 2477951..2478700 1 NC_013174.1 hypothetical protein 2478700 8381464 Jden_2308 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162246.1 2477951 D 471856 CDS YP_003162247.1 256833520 8381465 2478796..2479230 1 NC_013174.1 KEGG: YALI0E14487p; hypothetical protein 2479230 8381465 Jden_2309 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162247.1 2478796 D 471856 CDS YP_003162248.1 256833521 8381466 2479242..2480141 1 NC_013174.1 hypothetical protein 2480141 8381466 Jden_2310 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162248.1 2479242 D 471856 CDS YP_003162249.1 256833522 8381467 2480141..2480320 1 NC_013174.1 hypothetical protein 2480320 8381467 Jden_2311 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162249.1 2480141 D 471856 CDS YP_003162250.1 256833523 8381468 2480334..2480741 1 NC_013174.1 hypothetical protein 2480741 8381468 Jden_2312 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162250.1 2480334 D 471856 CDS YP_003162251.1 256833524 8381469 2480743..2481078 1 NC_013174.1 hypothetical protein 2481078 8381469 Jden_2313 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162251.1 2480743 D 471856 CDS YP_003162252.1 256833525 8381470 2481071..2481346 1 NC_013174.1 hypothetical protein 2481346 8381470 Jden_2314 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162252.1 2481071 D 471856 CDS YP_003162253.1 256833526 8381471 2481339..2481686 1 NC_013174.1 hypothetical protein 2481686 8381471 Jden_2315 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162253.1 2481339 D 471856 CDS YP_003162254.1 256833527 8381472 2481748..2482305 1 NC_013174.1 hypothetical protein 2482305 8381472 Jden_2316 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162254.1 2481748 D 471856 CDS YP_003162255.1 256833528 8381473 2482410..2482691 1 NC_013174.1 hypothetical protein 2482691 8381473 Jden_2317 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162255.1 2482410 D 471856 CDS YP_003162256.1 256833529 8381474 2482796..2483080 1 NC_013174.1 hypothetical protein 2483080 8381474 Jden_2318 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162256.1 2482796 D 471856 CDS YP_003162257.1 256833530 8381475 complement(2483134..2483610) 1 NC_013174.1 KEGG: GK17254 gene product from transcript GK17254- RA; hypothetical protein 2483610 8381475 Jden_2319 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162257.1 2483134 R 471856 CDS YP_003162258.1 256833531 8381476 2483652..2486030 1 NC_013174.1 TIGRFAM: phage tape measure protein; KEGG: bha:BH3518 hypothetical protein; phage tape measure protein 2486030 8381476 Jden_2320 Jonesia denitrificans DSM 20603 phage tape measure protein YP_003162258.1 2483652 D 471856 CDS YP_003162259.1 256833532 8381477 2486048..2488153 1 NC_013174.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: similar to titin isoform N2-A; fibronectin type III domain-containing protein 2488153 8381477 Jden_2321 Jonesia denitrificans DSM 20603 fibronectin type III domain-containing protein YP_003162259.1 2486048 D 471856 CDS YP_003162260.1 256833533 8381478 2488158..2490806 1 NC_013174.1 KEGG: rpd:RPD_1920 twin-arginine translocation pathway signal; hypothetical protein 2490806 8381478 Jden_2322 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162260.1 2488158 D 471856 CDS YP_003162261.1 256833534 8381479 2490849..2491652 1 NC_013174.1 hypothetical protein 2491652 8381479 Jden_2323 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162261.1 2490849 D 471856 CDS YP_003162262.1 256833535 8381480 2491645..2492685 1 NC_013174.1 hypothetical protein 2492685 8381480 Jden_2324 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162262.1 2491645 D 471856 CDS YP_003162263.1 256833536 8381481 2492686..2493294 1 NC_013174.1 hypothetical protein 2493294 8381481 Jden_2325 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162263.1 2492686 D 471856 CDS YP_003162264.1 256833537 8381482 2493317..2493703 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2493703 8381482 Jden_2326 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162264.1 2493317 D 471856 CDS YP_003162265.1 256833538 8381483 2493700..2493984 1 NC_013174.1 hypothetical protein 2493984 8381483 Jden_2327 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162265.1 2493700 D 471856 CDS YP_003162266.1 256833539 8381484 2494034..2494867 1 NC_013174.1 KEGG: nwi:Nwi_1540 hypothetical protein; hypothetical protein 2494867 8381484 Jden_2328 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162266.1 2494034 D 471856 CDS YP_003162267.1 256833540 8381485 2494879..2495094 1 NC_013174.1 hypothetical protein 2495094 8381485 Jden_2329 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162267.1 2494879 D 471856 CDS YP_003162268.1 256833541 8381486 2495081..2495317 1 NC_013174.1 hypothetical protein 2495317 8381486 Jden_2330 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162268.1 2495081 D 471856 CDS YP_003162269.1 256833542 8381487 2495304..2496452 1 NC_013174.1 hypothetical protein 2496452 8381487 Jden_2331 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162269.1 2495304 D 471856 CDS YP_003162270.1 256833543 8381488 complement(2496622..2497029) 1 NC_013174.1 hypothetical protein 2497029 8381488 Jden_2332 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162270.1 2496622 R 471856 CDS YP_003162271.1 256833544 8381489 complement(2497085..2497330) 1 NC_013174.1 hypothetical protein 2497330 8381489 Jden_2333 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162271.1 2497085 R 471856 CDS YP_003162272.1 256833545 8381490 complement(2497496..2498830) 1 NC_013174.1 PFAM: integrase family protein; KEGG: met:M446_3878 integrase family protein; integrase family protein 2498830 8381490 Jden_2334 Jonesia denitrificans DSM 20603 integrase family protein YP_003162272.1 2497496 R 471856 CDS YP_003162273.1 256833546 8381491 2498867..2499130 1 NC_013174.1 hypothetical protein 2499130 8381491 Jden_2335 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162273.1 2498867 D 471856 CDS YP_003162274.1 256833547 8381831 2499825..2500157 1 NC_013174.1 hypothetical protein 2500157 8381831 Jden_2337 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162274.1 2499825 D 471856 CDS YP_003162275.1 256833548 8381493 2500246..2500485 1 NC_013174.1 PFAM: Heavy metal transport/detoxification protein; KEGG: oca:OCAR_4883 hypothetical protein; heavy metal transport/detoxification protein 2500485 8381493 Jden_2338 Jonesia denitrificans DSM 20603 heavy metal transport/detoxification protein YP_003162275.1 2500246 D 471856 CDS YP_003162276.1 256833549 8381494 2500692..2502623 1 NC_013174.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pde:Pden_3295 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 2502623 8381494 Jden_2339 Jonesia denitrificans DSM 20603 heavy metal translocating P-type ATPase YP_003162276.1 2500692 D 471856 CDS YP_003162277.1 256833550 8381495 2503047..2503520 1 NC_013174.1 PFAM: protein of unknown function DUF1469; KEGG: rce:RC1_0497 hypothetical protein; hypothetical protein 2503520 8381495 Jden_2340 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162277.1 2503047 D 471856 CDS YP_003162278.1 256833551 8381496 2503517..2503786 1 NC_013174.1 hypothetical protein 2503786 8381496 Jden_2341 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162278.1 2503517 D 471856 CDS YP_003162279.1 256833552 8381497 2503836..2504264 1 NC_013174.1 KEGG: AEL327Wp; hypothetical protein 2504264 8381497 Jden_2342 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162279.1 2503836 D 471856 CDS YP_003162280.1 256833553 8381498 2504299..2505708 1 NC_013174.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase; histidine kinase 2505708 8381498 Jden_2343 Jonesia denitrificans DSM 20603 histidine kinase YP_003162280.1 2504299 D 471856 CDS YP_003162281.1 256833554 8381499 2505705..2506388 1 NC_013174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gme:Gmet_3383 two component transcriptional regulator; two component transcriptional regulator, winged helix family 2506388 8381499 Jden_2344 Jonesia denitrificans DSM 20603 two component transcriptional regulator, winged helix family YP_003162281.1 2505705 D 471856 CDS YP_003162282.1 256833555 8381500 2506499..2506978 1 NC_013174.1 PFAM: protein of unknown function DUF107; hypothetical protein 2506978 8381500 Jden_2345 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162282.1 2506499 D 471856 CDS YP_003162283.1 256833556 8381501 2507082..2508530 1 NC_013174.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: hypothetical protein; hypothetical protein 2508530 8381501 Jden_2346 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162283.1 2507082 D 471856 CDS YP_003162284.1 256833557 8381502 2508837..2509055 1 NC_013174.1 hypothetical protein 2509055 8381502 Jden_2347 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162284.1 2508837 D 471856 CDS YP_003162285.1 256833558 8381503 complement(2509245..2510504) 1 NC_013174.1 PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein; aminoglycoside phosphotransferase 2510504 8381503 Jden_2348 Jonesia denitrificans DSM 20603 aminoglycoside phosphotransferase YP_003162285.1 2509245 R 471856 CDS YP_003162286.1 256833559 8381504 complement(2510692..2510931) 1 NC_013174.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cps:CPS_1619 DNA-binding response regulator; DNA binding domain-containing protein 2510931 8381504 Jden_2349 Jonesia denitrificans DSM 20603 DNA binding domain-containing protein YP_003162286.1 2510692 R 471856 CDS YP_003162287.1 256833560 8381505 2511250..2511444 1 NC_013174.1 hypothetical protein 2511444 8381505 Jden_2350 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162287.1 2511250 D 471856 CDS YP_003162288.1 256833561 8381506 complement(2511747..2512856) 1 NC_013174.1 KEGG: mfa:Mfla_0205 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 2512856 8381506 Jden_2351 Jonesia denitrificans DSM 20603 phosphoribosylformylglycinamidine cyclo-ligase YP_003162288.1 2511747 R 471856 CDS YP_003162289.1 256833562 8381507 complement(2512874..2514415) 1 NC_013174.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: acp:A2cp1_4361 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2514415 8381507 Jden_2352 Jonesia denitrificans DSM 20603 amidophosphoribosyltransferase YP_003162289.1 2512874 R 471856 CDS YP_003162290.1 256833563 8381508 complement(2514464..2514802) 1 NC_013174.1 hypothetical protein 2514802 8381508 Jden_2353 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162290.1 2514464 R 471856 CDS YP_003162291.1 256833564 8381509 2514980..2516014 1 NC_013174.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce0326 periplasmic sulfate binding protein; sulfate ABC transporter substrate-binding protein 2516014 8381509 Jden_2354 Jonesia denitrificans DSM 20603 sulfate ABC transporter substrate-binding protein YP_003162291.1 2514980 D 471856 CDS YP_003162292.1 256833565 8381510 2516011..2516796 1 NC_013174.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpi:Rpic_1221 sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit CysT 2516796 8381510 Jden_2355 Jonesia denitrificans DSM 20603 sulfate ABC transporter, inner membrane subunit CysT YP_003162292.1 2516011 D 471856 CDS YP_003162293.1 256833566 8381511 2516789..2517619 1 NC_013174.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A3402 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 2517619 8381511 Jden_2356 Jonesia denitrificans DSM 20603 sulfate ABC transporter permease YP_003162293.1 2516789 D 471856 CDS YP_003162294.1 256833567 8381512 2517616..2518647 1 NC_013174.1 KEGG: dar:Daro_3690 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 2518647 8381512 Jden_2357 Jonesia denitrificans DSM 20603 sulfate ABC transporter ATPase YP_003162294.1 2517616 D 471856 CDS YP_003162295.1 256833568 8381513 complement(2518659..2519045) 1 NC_013174.1 hypothetical protein 2519045 8381513 Jden_2358 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162295.1 2518659 R 471856 CDS YP_003162296.1 256833569 8381514 complement(2519217..2520551) 1 NC_013174.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: swi:Swit_0418 glutamate dehydrogenase; glutamate dehydrogenase 2520551 8381514 Jden_2359 Jonesia denitrificans DSM 20603 glutamate dehydrogenase YP_003162296.1 2519217 R 471856 CDS YP_003162297.1 256833570 8381515 complement(2520843..2522366) 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce3488 nitrite reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2522366 8381515 Jden_2360 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003162297.1 2520843 R 471856 CDS YP_003162298.1 256833571 8381516 complement(2522363..2524561) 1 NC_013174.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: msl:Msil_3772 molybdopterin oxidoreductase; molybdopterin oxidoreductase 2524561 8381516 Jden_2361 Jonesia denitrificans DSM 20603 molybdopterin oxidoreductase YP_003162298.1 2522363 R 471856 CDS YP_003162299.1 256833572 8381517 complement(2524571..2525947) 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein; major facilitator superfamily protein 2525947 8381517 Jden_2362 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003162299.1 2524571 R 471856 CDS YP_003162300.1 256833573 8381518 complement(2526099..2527277) 1 NC_013174.1 PFAM: FAD dependent oxidoreductase; KEGG: met:M446_4751 sarcosine oxidase; sarcosine oxidase 2527277 8381518 Jden_2363 Jonesia denitrificans DSM 20603 sarcosine oxidase YP_003162300.1 2526099 R 471856 CDS YP_003162301.1 256833574 8381519 complement(2527289..2529613) 1 NC_013174.1 KEGG: afw:Anae109_4362 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase II 2529613 8381519 Jden_2364 Jonesia denitrificans DSM 20603 phosphoribosylformylglycinamidine synthase II YP_003162301.1 2527289 R 471856 CDS YP_003162302.1 256833575 8381520 2529780..2530595 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2530595 8381520 Jden_2365 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162302.1 2529780 D 471856 CDS YP_003162303.1 256833576 8381521 2530718..2531674 1 NC_013174.1 PFAM: periplasmic binding protein; KEGG: oan:Oant_3797 periplasmic binding protein; periplasmic binding protein 2531674 8381521 Jden_2366 Jonesia denitrificans DSM 20603 periplasmic binding protein YP_003162303.1 2530718 D 471856 CDS YP_003162304.1 256833577 8381522 2531710..2532750 1 NC_013174.1 PFAM: transport system permease protein; KEGG: atc:AGR_C_4489 ferrichrome ABC transporter (permease); transport system permease 2532750 8381522 Jden_2367 Jonesia denitrificans DSM 20603 transport system permease YP_003162304.1 2531710 D 471856 CDS YP_003162305.1 256833578 8381523 2532804..2533811 1 NC_013174.1 PFAM: transport system permease protein; KEGG: oan:Oant_3799 transport system permease protein; transport system permease 2533811 8381523 Jden_2368 Jonesia denitrificans DSM 20603 transport system permease YP_003162305.1 2532804 D 471856 CDS YP_003162306.1 256833579 8381524 2533808..2534566 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmt:BSUIS_B0663 hypothetical protein; ABC transporter 2534566 8381524 Jden_2369 Jonesia denitrificans DSM 20603 ABC transporter YP_003162306.1 2533808 D 471856 CDS YP_003162307.1 256833580 8381525 complement(2534594..2535661) 1 NC_013174.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: abu:Abu_1147 putative efflux protein; hypothetical protein 2535661 8381525 Jden_2370 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162307.1 2534594 R 471856 CDS YP_003162308.1 256833581 8381526 complement(2535658..2537130) 1 NC_013174.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: shl:Shal_2699 hypothetical protein; hypothetical protein 2537130 8381526 Jden_2371 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162308.1 2535658 R 471856 CDS YP_003162309.1 256833582 8381527 2537178..2537336 1 NC_013174.1 hypothetical protein 2537336 8381527 Jden_2372 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162309.1 2537178 D 471856 CDS YP_003162310.1 256833583 8381528 2537436..2538320 1 NC_013174.1 hypothetical protein 2538320 8381528 Jden_2373 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162310.1 2537436 D 471856 CDS YP_003162311.1 256833584 8381529 2538317..2539237 1 NC_013174.1 hypothetical protein 2539237 8381529 Jden_2374 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162311.1 2538317 D 471856 CDS YP_003162312.1 256833585 8381530 complement(2539254..2539679) 1 NC_013174.1 PFAM: DoxX family protein; KEGG: bba:Bd2812 hypothetical protein; DoxX family protein 2539679 8381530 Jden_2375 Jonesia denitrificans DSM 20603 DoxX family protein YP_003162312.1 2539254 R 471856 CDS YP_003162313.1 256833586 8381531 complement(2539782..2541854) 1 NC_013174.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6432 putative acyl-CoA dehydrogenase; acyl-CoA oxidase domain-containing protein 2541854 8381531 Jden_2376 Jonesia denitrificans DSM 20603 acyl-CoA oxidase domain-containing protein YP_003162313.1 2539782 R 471856 CDS YP_003162314.1 256833587 8381532 complement(2541920..2542555) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: ent:Ent638_2692 TetR family transcriptional regulator; TetR family transcriptional regulator 2542555 8381532 Jden_2377 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003162314.1 2541920 R 471856 CDS YP_003162315.1 256833588 8381533 2542624..2543940 1 NC_013174.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: pmy:Pmen_0745 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 2543940 8381533 Jden_2378 Jonesia denitrificans DSM 20603 acetyl-CoA acetyltransferase YP_003162315.1 2542624 D 471856 CDS YP_003162316.1 256833589 8381534 2543998..2545416 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_0416 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2545416 8381534 Jden_2379 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003162316.1 2543998 D 471856 CDS YP_003162317.1 256833590 8381535 2545413..2546366 1 NC_013174.1 PFAM: MaoC domain protein dehydratase; KEGG: pmy:Pmen_0742 dehydratase; MaoC domain-containing protein dehydratase 2546366 8381535 Jden_2380 Jonesia denitrificans DSM 20603 MaoC domain-containing protein dehydratase YP_003162317.1 2545413 D 471856 CDS YP_003162318.1 256833591 8381536 complement(2546675..2546830) 1 NC_013174.1 hypothetical protein 2546830 8381536 Jden_2381 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162318.1 2546675 R 471856 CDS YP_003162319.1 256833592 8381537 2547257..2547694 1 NC_013174.1 hypothetical protein 2547694 8381537 Jden_2382 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162319.1 2547257 D 471856 CDS YP_003162320.1 256833593 8381538 complement(2547807..2549093) 1 NC_013174.1 KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; PFAM: glycoside hydrolase family 11; cellulose- binding family II; SMART: cellulose-binding family II; endo-1,4-beta-xylanase 2549093 8381538 Jden_2383 Jonesia denitrificans DSM 20603 endo-1,4-beta-xylanase YP_003162320.1 2547807 R 471856 CDS YP_003162321.1 256833594 8381539 complement(2549446..2550582) 1 NC_013174.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: oan:Oant_2127 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2550582 8381539 Jden_2384 Jonesia denitrificans DSM 20603 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003162321.1 2549446 R 471856 CDS YP_003162322.1 256833595 8381540 complement(2550782..2551393) 1 NC_013174.1 KEGG: mxa:MXAN_1062 acetyltransferase, GNAT family; acetyltransferase, GNAT family 2551393 8381540 Jden_2385 Jonesia denitrificans DSM 20603 acetyltransferase, GNAT family YP_003162322.1 2550782 R 471856 CDS YP_003162323.1 256833596 8381541 2551665..2552264 1 NC_013174.1 KEGG: hypothetical protein LOC754593; hypothetical protein 2552264 8381541 Jden_2386 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162323.1 2551665 D 471856 CDS YP_003162324.1 256833597 8381542 2552285..2553103 1 NC_013174.1 KEGG: predicted protein; hypothetical protein 2553103 8381542 Jden_2387 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162324.1 2552285 D 471856 CDS YP_003162325.1 256833598 8381832 complement(2553359..2554255) 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sme:SMa1166 putative hydrolase protein; alpha/beta hydrolase fold protein 2554255 8381832 Jden_2389 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003162325.1 2553359 R 471856 CDS YP_003162326.1 256833599 8381544 complement(2554444..2555592) 1 NC_013174.1 TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: sbo:SBO_0793 23S rRNA metyluridine methyltransferase; 23S rRNA (uracil-5-)-methyltransferase RumB 2555592 8381544 Jden_2390 Jonesia denitrificans DSM 20603 23S rRNA (uracil-5-)-methyltransferase RumB YP_003162326.1 2554444 R 471856 CDS YP_003162327.1 256833600 8381545 complement(2555737..2557173) 1 NC_013174.1 PFAM: aminotransferase class V; KEGG: scl:sce1210 hypothetical protein; cysteine desulfurase 2557173 8381545 Jden_2391 Jonesia denitrificans DSM 20603 cysteine desulfurase YP_003162327.1 2555737 R 471856 CDS YP_003162328.1 256833601 8381546 2557624..2558049 1 NC_013174.1 SMART: Rhodanese domain protein; KEGG: pla:Plav_0002 rhodanese domain-containing protein; rhodanese domain-containing protein 2558049 8381546 Jden_2392 Jonesia denitrificans DSM 20603 rhodanese domain-containing protein YP_003162328.1 2557624 D 471856 CDS YP_003162329.1 256833602 8381547 2558054..2559268 1 NC_013174.1 KEGG: gox:GOX1671 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-succinylhomoserine sulfhydrylase 2559268 8381547 Jden_2393 Jonesia denitrificans DSM 20603 O-succinylhomoserine sulfhydrylase YP_003162329.1 2558054 D 471856 CDS YP_003162330.1 256833603 8381548 2559337..2561388 1 NC_013174.1 PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: bha:BH1061 alpha-glucuronidase; alpha-glucuronidase 2561388 8381548 Jden_2394 Jonesia denitrificans DSM 20603 alpha-glucuronidase YP_003162330.1 2559337 D 471856 CDS YP_003162331.1 256833604 8381549 2561429..2562187 1 NC_013174.1 KEGG: bcb:BCB4264_A3163 hypothetical protein; hypothetical protein 2562187 8381549 Jden_2395 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162331.1 2561429 D 471856 CDS YP_003162332.1 256833605 8381550 complement(2562177..2562851) 1 NC_013174.1 hypothetical protein 2562851 8381550 Jden_2396 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162332.1 2562177 R 471856 CDS YP_003162333.1 256833606 8381551 complement(2562851..2564923) 1 NC_013174.1 PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase; beta-galactosidase 2564923 8381551 Jden_2397 Jonesia denitrificans DSM 20603 beta-galactosidase YP_003162333.1 2562851 R 471856 CDS YP_003162334.1 256833607 8381552 complement(2564979..2566538) 1 NC_013174.1 PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase; xylan 1,4-beta-xylosidase 2566538 8381552 Jden_2398 Jonesia denitrificans DSM 20603 xylan 1,4-beta-xylosidase YP_003162334.1 2564979 R 471856 CDS YP_003162335.1 256833608 8381553 complement(2566618..2568279) 1 NC_013174.1 PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein; extracellular solute-binding protein 2568279 8381553 Jden_2399 Jonesia denitrificans DSM 20603 extracellular solute-binding protein YP_003162335.1 2566618 R 471856 CDS YP_003162336.1 256833609 8381554 complement(2568358..2569299) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase); binding-protein-dependent transport system inner membrane protein 2569299 8381554 Jden_2400 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162336.1 2568358 R 471856 CDS YP_003162337.1 256833610 8381555 complement(2569293..2570315) 1 NC_013174.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07110 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein 2570315 8381555 Jden_2401 Jonesia denitrificans DSM 20603 binding-protein-dependent transport system inner membrane protein YP_003162337.1 2569293 R 471856 CDS YP_003162338.1 256833611 8381833 2571733..2572662 1 NC_013174.1 PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase; Acetyl xylan esterase 2572662 8381833 Jden_2403 Jonesia denitrificans DSM 20603 Acetyl xylan esterase YP_003162338.1 2571733 D 471856 CDS YP_003162339.1 256833612 8381557 2572669..2573718 1 NC_013174.1 KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; transcriptional regulator, LacI family 2573718 8381557 Jden_2404 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003162339.1 2572669 D 471856 CDS YP_003162340.1 256833613 8381558 2573824..2575218 1 NC_013174.1 PFAM: Glucuronate isomerase; KEGG: mmr:Mmar10_0230 glucuronate isomerase; glucuronate isomerase 2575218 8381558 Jden_2405 Jonesia denitrificans DSM 20603 glucuronate isomerase YP_003162340.1 2573824 D 471856 CDS YP_003162341.1 256833614 8381559 2575215..2576663 1 NC_013174.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sde:Sde_0941 putative D-mannonate oxidoreductase protein; mannitol dehydrogenase domain-containing protein 2576663 8381559 Jden_2406 Jonesia denitrificans DSM 20603 mannitol dehydrogenase domain-containing protein YP_003162341.1 2575215 D 471856 CDS YP_003162342.1 256833615 8381560 2576791..2578020 1 NC_013174.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ecr:ECIAI1_1631 putative enolase/dehydratase; mandelate racemase/muconate-lactonizing protein 2578020 8381560 Jden_2407 Jonesia denitrificans DSM 20603 mandelate racemase/muconate-lactonizing protein YP_003162342.1 2576791 D 471856 CDS YP_003162343.1 256833616 8381561 2578150..2578680 1 NC_013174.1 KEGG: pde:Pden_2932 carbohydrate kinase, thermoresistant glucokinase family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 2578680 8381561 Jden_2408 Jonesia denitrificans DSM 20603 thermoresistant glucokinase family carbohydrate kinase YP_003162343.1 2578150 D 471856 CDS YP_003162344.1 256833617 8381837 complement(2584420..2584902) 1 NC_013174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_3193 IAA acetyltransferase; N-acetyltransferase GCN5 2584902 8381837 Jden_2409 Jonesia denitrificans DSM 20603 N-acetyltransferase GCN5 YP_003162344.1 2584420 R 471856 CDS YP_003162345.1 256833618 8381563 complement(2585205..2585921) 1 NC_013174.1 KEGG: bha:BH0628 phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I 2585921 8381563 Jden_2410 Jonesia denitrificans DSM 20603 phosphoribosylformylglycinamidine synthase I YP_003162345.1 2585205 R 471856 CDS YP_003162346.1 256833619 8381564 complement(2585921..2586181) 1 NC_013174.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; KEGG: nwi:Nwi_1305 phosphoribosylformylglycinamidine synthase subunit PurS; phosphoribosylformylglycinamidine synthase PurS 2586181 8381564 Jden_2411 Jonesia denitrificans DSM 20603 phosphoribosylformylglycinamidine synthase PurS YP_003162346.1 2585921 R 471856 CDS YP_003162347.1 256833620 8381565 complement(2586287..2587249) 1 NC_013174.1 KEGG: rpd:RPD_0150 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2587249 8381565 Jden_2412 Jonesia denitrificans DSM 20603 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003162347.1 2586287 R 471856 CDS YP_003162348.1 256833621 8381566 complement(2587246..2588556) 1 NC_013174.1 KEGG: gbe:GbCGDNIH1_2297 phosphoribosylamine-- glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine/glycine ligase 2588556 8381566 Jden_2413 Jonesia denitrificans DSM 20603 phosphoribosylamine/glycine ligase YP_003162348.1 2587246 R 471856 CDS YP_003162349.1 256833622 8381567 2588891..2589856 1 NC_013174.1 PFAM: fatty acid desaturase; KEGG: cak:Caul_2941 fatty acid desaturase; fatty acid desaturase 2589856 8381567 Jden_2414 Jonesia denitrificans DSM 20603 fatty acid desaturase YP_003162349.1 2588891 D 471856 CDS YP_003162350.1 256833623 8381568 2589944..2590984 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: lch:Lcho_3227 LacI family transcription regulator; transcriptional regulator, LacI family 2590984 8381568 Jden_2415 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003162350.1 2589944 D 471856 CDS YP_003162351.1 256833624 8381569 complement(2590959..2592245) 1 NC_013174.1 KEGG: sfu:Sfum_1271 adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 2592245 8381569 Jden_2416 Jonesia denitrificans DSM 20603 adenylosuccinate synthetase YP_003162351.1 2590959 R 471856 CDS YP_003162352.1 256833625 8381570 2592488..2592823 1 NC_013174.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb1117 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist 2592823 8381570 Jden_2417 Jonesia denitrificans DSM 20603 anti-sigma-factor antagonist YP_003162352.1 2592488 D 471856 CDS YP_003162353.1 256833626 8381571 complement(2592847..2595087) 1 NC_013174.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: glo:Glov_2100 putative phytochrome sensor protein; protein serine/threonine phosphatase 2595087 8381571 Jden_2418 Jonesia denitrificans DSM 20603 protein serine/threonine phosphatase YP_003162353.1 2592847 R 471856 CDS YP_003162354.1 256833627 8381572 2595221..2595601 1 NC_013174.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 2595601 8381572 Jden_2419 Jonesia denitrificans DSM 20603 anti-sigma-factor antagonist YP_003162354.1 2595221 D 471856 CDS YP_003162355.1 256833628 8381573 complement(2595708..2596730) 1 NC_013174.1 KEGG: sfu:Sfum_1469 fructose-bisphosphate aldolase, class II; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase 2596730 8381573 Jden_2420 Jonesia denitrificans DSM 20603 fructose-bisphosphate aldolase YP_003162355.1 2595708 R 471856 CDS YP_003162356.1 256833629 8381574 complement(2596870..2597331) 1 NC_013174.1 hypothetical protein 2597331 8381574 Jden_2421 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162356.1 2596870 R 471856 CDS YP_003162357.1 256833630 8381575 complement(2597376..2597501) 1 NC_013174.1 hypothetical protein 2597501 8381575 Jden_2422 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162357.1 2597376 R 471856 CDS YP_003162358.1 256833631 8381576 complement(2597605..2598369) 1 NC_013174.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hypothetical protein; tRNA/rRNA methyltransferase SpoU 2598369 8381576 Jden_2423 Jonesia denitrificans DSM 20603 tRNA/rRNA methyltransferase SpoU YP_003162358.1 2597605 R 471856 CDS YP_003162359.1 256833632 8381577 2598496..2599269 1 NC_013174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_0794 HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily hydrolase 2599269 8381577 Jden_2424 Jonesia denitrificans DSM 20603 HAD-superfamily hydrolase YP_003162359.1 2598496 D 471856 CDS YP_003162360.1 256833633 8381578 complement(2599402..2599977) 1 NC_013174.1 KEGG: pca:Pcar_1325 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 2599977 8381578 Jden_2425 Jonesia denitrificans DSM 20603 orotate phosphoribosyltransferase YP_003162360.1 2599402 R 471856 CDS YP_003162361.1 256833634 8381579 complement(2599997..2600806) 1 NC_013174.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1100 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2600806 8381579 Jden_2426 Jonesia denitrificans DSM 20603 short-chain dehydrogenase/reductase SDR YP_003162361.1 2599997 R 471856 CDS YP_003162362.1 256833635 8381580 complement(2600816..2601442) 1 NC_013174.1 hypothetical protein 2601442 8381580 Jden_2427 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162362.1 2600816 R 471856 CDS YP_003162363.1 256833636 8381581 2601491..2602285 1 NC_013174.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mxa:MXAN_5178 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 2602285 8381581 Jden_2428 Jonesia denitrificans DSM 20603 exodeoxyribonuclease III Xth YP_003162363.1 2601491 D 471856 CDS YP_003162364.1 256833637 8381582 2602650..2603486 1 NC_013174.1 PFAM: NLP/P60 protein; KEGG: sfv:SFV_1677 putative lipoprotein; NLP/P60 protein 2603486 8381582 Jden_2429 Jonesia denitrificans DSM 20603 NLP/P60 protein YP_003162364.1 2602650 D 471856 CDS YP_003162365.1 256833638 8381583 complement(2603473..2604096) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator; TetR family transcriptional regulator 2604096 8381583 Jden_2430 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003162365.1 2603473 R 471856 CDS YP_003162366.1 256833639 8381584 complement(2604188..2606785) 1 NC_013174.1 KEGG: rce:RC1_2633 ATP-dependent chaperone protein ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 2606785 8381584 Jden_2431 Jonesia denitrificans DSM 20603 ATP-dependent chaperone ClpB YP_003162366.1 2604188 R 471856 CDS YP_003162367.1 256833640 8381585 2607026..2607967 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2607967 8381585 Jden_2432 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162367.1 2607026 D 471856 CDS YP_003162368.1 256833641 8381586 2607964..2608971 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: aci:ACIAD2016 hypothetical protein; alpha/beta hydrolase fold protein 2608971 8381586 Jden_2433 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003162368.1 2607964 D 471856 CDS YP_003162369.1 256833642 8381587 complement(2608987..2609394) 1 NC_013174.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: gsu:GSU2338 putative monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter subunit MnhG/PhaG 2609394 8381587 Jden_2434 Jonesia denitrificans DSM 20603 monovalent cation/proton antiporter subunit MnhG/PhaG YP_003162369.1 2608987 R 471856 CDS YP_003162370.1 256833643 8381588 complement(2609391..2609747) 1 NC_013174.1 PFAM: multiple resistance and pH regulation protein F; KEGG: sme:SMc00056 putative monovalent cation/H+ antiporter subunit F; multiple resistance and pH regulation protein F 2609747 8381588 Jden_2435 Jonesia denitrificans DSM 20603 multiple resistance and pH regulation protein F YP_003162370.1 2609391 R 471856 CDS YP_003162371.1 256833644 8381589 complement(2609744..2610352) 1 NC_013174.1 KEGG: hha:Hhal_2031 cation antiporter; multisubunit Na+/H+ antiporter MnhE subunit-like protein 2610352 8381589 Jden_2436 Jonesia denitrificans DSM 20603 multisubunit Na+/H+ antiporter MnhE subunit-like protein YP_003162371.1 2609744 R 471856 CDS YP_003162372.1 256833645 8381590 complement(2610349..2611941) 1 NC_013174.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tgr:Tgr7_2525 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2611941 8381590 Jden_2437 Jonesia denitrificans DSM 20603 NADH dehydrogenase (quinone) YP_003162372.1 2610349 R 471856 CDS YP_003162373.1 256833646 8381591 complement(2611938..2612417) 1 NC_013174.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: bha:BH1317 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L 2612417 8381591 Jden_2438 Jonesia denitrificans DSM 20603 NADH-ubiquinone oxidoreductase chain 4L YP_003162373.1 2611938 R 471856 CDS YP_003162374.1 256833647 8381592 complement(2612414..2615425) 1 NC_013174.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: ilo:IL1907 putative monovalent cation/H+ antiporter subunit A; NADH dehydrogenase (quinone) 2615425 8381592 Jden_2439 Jonesia denitrificans DSM 20603 NADH dehydrogenase (quinone) YP_003162374.1 2612414 R 471856 CDS YP_003162375.1 256833648 8381593 complement(2615534..2616688) 1 NC_013174.1 hypothetical protein 2616688 8381593 Jden_2440 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162375.1 2615534 R 471856 CDS YP_003162376.1 256833649 8381594 complement(2616706..2617290) 1 NC_013174.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: amc:MADE_01987 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 2617290 8381594 Jden_2441 Jonesia denitrificans DSM 20603 deoxycytidine triphosphate deaminase YP_003162376.1 2616706 R 471856 CDS YP_003162377.1 256833650 8381838 2617733..2618251 1 NC_013174.1 KEGG: tdn:Suden_0151 CDP-alcohol phosphatidyltransferase; hypothetical protein 2618251 8381838 Jden_2442 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162377.1 2617733 D 471856 CDS YP_003162378.1 256833651 8381596 complement(2618581..2619465) 1 NC_013174.1 hypothetical protein 2619465 8381596 Jden_2443 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162378.1 2618581 R 471856 CDS YP_003162379.1 256833652 8381597 2619626..2620261 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: ank:AnaeK_3256 transcriptional regulator, TetR family; TetR family transcriptional regulator 2620261 8381597 Jden_2444 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003162379.1 2619626 D 471856 CDS YP_003162380.1 256833653 8381598 complement(2620262..2620960) 1 NC_013174.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr5147 hypothetical protein; haloacid dehalogenase domain-containing protein hydrolase 2620960 8381598 Jden_2445 Jonesia denitrificans DSM 20603 haloacid dehalogenase domain-containing protein hydrolase YP_003162380.1 2620262 R 471856 CDS YP_003162381.1 256833654 8381599 complement(2621013..2622899) 1 NC_013174.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: haloacid dehalogenase-like hydrolase family protein; alkyl hydroperoxide reductase 2622899 8381599 Jden_2446 Jonesia denitrificans DSM 20603 alkyl hydroperoxide reductase YP_003162381.1 2621013 R 471856 CDS YP_003162382.1 256833655 8381600 2623099..2624268 1 NC_013174.1 PFAM: chitin-binding domain 3 protein; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: cvi:CV_0554 carbohydrate-binding protein; chitin-binding protein 2624268 8381600 Jden_2447 Jonesia denitrificans DSM 20603 chitin-binding protein YP_003162382.1 2623099 D 471856 CDS YP_003162383.1 256833656 8381601 complement(2624365..2626428) 1 NC_013174.1 PFAM: copper resistance D domain protein; KEGG: bha:BH0892 hypothetical protein; copper resistance D domain-containing protein 2626428 8381601 Jden_2448 Jonesia denitrificans DSM 20603 copper resistance D domain-containing protein YP_003162383.1 2624365 R 471856 CDS YP_003162384.1 256833657 8381602 2626507..2627556 1 NC_013174.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bba:Bd2797 putative Mg chelatase; ATPase 2627556 8381602 Jden_2449 Jonesia denitrificans DSM 20603 ATPase YP_003162384.1 2626507 D 471856 CDS YP_003162385.1 256833658 8381603 2627575..2628471 1 NC_013174.1 KEGG: gbm:Gbem_1809 protein of unknown function DUF58; hypothetical protein 2628471 8381603 Jden_2450 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162385.1 2627575 D 471856 CDS YP_003162386.1 256833659 8381604 2628607..2629761 1 NC_013174.1 PFAM: SCP-like extracellular; KEGG: GA22995 gene product from transcript GA22995- RA; hypothetical protein 2629761 8381604 Jden_2451 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162386.1 2628607 D 471856 CDS YP_003162387.1 256833660 8381605 2629886..2630392 1 NC_013174.1 hypothetical protein 2630392 8381605 Jden_2452 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162387.1 2629886 D 471856 CDS YP_003162388.1 256833661 8381606 2630389..2631438 1 NC_013174.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pha:PSHAa0962 von Willebrand factor type A; von Willebrand factor type A 2631438 8381606 Jden_2453 Jonesia denitrificans DSM 20603 von Willebrand factor type A YP_003162388.1 2630389 D 471856 CDS YP_003162389.1 256833662 8381607 2631435..2632433 1 NC_013174.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dal:Dalk_3471 von Willebrand factor type A; von Willebrand factor type A 2632433 8381607 Jden_2454 Jonesia denitrificans DSM 20603 von Willebrand factor type A YP_003162389.1 2631435 D 471856 CDS YP_003162390.1 256833663 8381608 2632436..2633482 1 NC_013174.1 KEGG: hypothetical protein; hypothetical protein 2633482 8381608 Jden_2455 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162390.1 2632436 D 471856 CDS YP_003162391.1 256833664 8381609 complement(2633455..2637198) 1 NC_013174.1 KEGG: bbr:BB2829 hypothetical protein; hypothetical protein 2637198 8381609 Jden_2456 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162391.1 2633455 R 471856 CDS YP_003162392.1 256833665 8381610 2637439..2638263 1 NC_013174.1 KEGG: dsh:Dshi_3407 putative suppressor for copper- sensitivity B precursor; hypothetical protein 2638263 8381610 Jden_2457 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162392.1 2637439 D 471856 CDS YP_003162393.1 256833666 8381611 2638260..2639072 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO1511 efflux ABC transporter, ATP- binding protein; ABC transporter 2639072 8381611 Jden_2458 Jonesia denitrificans DSM 20603 ABC transporter YP_003162393.1 2638260 D 471856 CDS YP_003162394.1 256833667 8381612 complement(2639023..2639340) 1 NC_013174.1 hypothetical protein 2639340 8381612 Jden_2459 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162394.1 2639023 R 471856 CDS YP_003162395.1 256833668 8381613 2639470..2640096 1 NC_013174.1 KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein 2640096 8381613 Jden_2460 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162395.1 2639470 D 471856 CDS YP_003162396.1 256833669 8381614 2640191..2641531 1 NC_013174.1 PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: hypothetical protein; FAD linked oxidase domain-containing protein 2641531 8381614 Jden_2461 Jonesia denitrificans DSM 20603 FAD linked oxidase domain-containing protein YP_003162396.1 2640191 D 471856 CDS YP_003162397.1 256833670 8381615 complement(2641580..2644408) 1 NC_013174.1 KEGG: mxa:MXAN_1392 hypothetical protein; hypothetical protein 2644408 8381615 Jden_2462 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162397.1 2641580 R 471856 CDS YP_003162398.1 256833671 8381616 complement(2644410..2646275) 1 NC_013174.1 KEGG: mxa:MXAN_1393 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein 2646275 8381616 Jden_2463 Jonesia denitrificans DSM 20603 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein YP_003162398.1 2644410 R 471856 CDS YP_003162399.1 256833672 8381617 2646427..2646816 1 NC_013174.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcz:pE33L466_0439 transcriptional regulator; ArsR family transcriptional regulator 2646816 8381617 Jden_2464 Jonesia denitrificans DSM 20603 ArsR family transcriptional regulator YP_003162399.1 2646427 D 471856 CDS YP_003162400.1 256833673 8381618 2646813..2648453 1 NC_013174.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: net:Neut_0352 sulphate transporter; sulfate transporter 2648453 8381618 Jden_2465 Jonesia denitrificans DSM 20603 sulfate transporter YP_003162400.1 2646813 D 471856 CDS YP_003162401.1 256833674 8381619 complement(2648541..2650091) 1 NC_013174.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: ank:AnaeK_2035 catalytic domain of components of various dehydrogenase complexes; catalytic domain of components of various dehydrogenase complexes 2650091 8381619 Jden_2466 Jonesia denitrificans DSM 20603 catalytic domain of components of various dehydrogenase complexes YP_003162401.1 2648541 R 471856 CDS YP_003162402.1 256833675 8381620 complement(2650136..2651164) 1 NC_013174.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: ade:Adeh_1826 branched-chain alpha-keto acid dehydrogenase E1 component; transketolase 2651164 8381620 Jden_2467 Jonesia denitrificans DSM 20603 transketolase YP_003162402.1 2650136 R 471856 CDS YP_003162403.1 256833676 8381621 complement(2651161..2652342) 1 NC_013174.1 KEGG: gme:Gmet_2509 dehydrogenase, E1 component; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 2652342 8381621 Jden_2468 Jonesia denitrificans DSM 20603 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_003162403.1 2651161 R 471856 CDS YP_003162404.1 256833677 8381622 complement(2652576..2652974) 1 NC_013174.1 PFAM: membrane protein of unknown function; KEGG: ccs:CCNA_03194 integral membrane protein; hypothetical protein 2652974 8381622 Jden_2469 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162404.1 2652576 R 471856 CDS YP_003162405.1 256833678 8381623 2653046..2654134 1 NC_013174.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_0927 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2654134 8381623 Jden_2470 Jonesia denitrificans DSM 20603 histidinol-phosphate aminotransferase YP_003162405.1 2653046 D 471856 CDS YP_003162406.1 256833679 8381624 complement(2654197..2655249) 1 NC_013174.1 PFAM: Luciferase-like monooxygenase; KEGG: mno:Mnod_7218 luciferase-like monooxygenase; luciferase-like monooxygenase 2655249 8381624 Jden_2471 Jonesia denitrificans DSM 20603 luciferase-like monooxygenase YP_003162406.1 2654197 R 471856 CDS YP_003162407.1 256833680 8381625 2655342..2656901 1 NC_013174.1 PFAM: GAF domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; GAF domain protein; KEGG: pzu:PHZ_c3236 methyl-accepting chemotaxis protein McpH; methyl-accepting chemotaxis sensory transducer with GAF sensor 2656901 8381625 Jden_2472 Jonesia denitrificans DSM 20603 methyl-accepting chemotaxis sensory transducer with GAF sensor YP_003162407.1 2655342 D 471856 CDS YP_003162408.1 256833681 8381626 complement(2656891..2657865) 1 NC_013174.1 PFAM: alpha/beta hydrolase fold protein; KEGG: alpha/beta hydrolase protein; alpha/beta hydrolase fold protein 2657865 8381626 Jden_2473 Jonesia denitrificans DSM 20603 alpha/beta hydrolase fold protein YP_003162408.1 2656891 R 471856 CDS YP_003162409.1 256833682 8381627 complement(2657862..2659136) 1 NC_013174.1 hypothetical protein 2659136 8381627 Jden_2474 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162409.1 2657862 R 471856 CDS YP_003162410.1 256833683 8381628 complement(2659146..2659397) 1 NC_013174.1 hypothetical protein 2659397 8381628 Jden_2475 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162410.1 2659146 R 471856 CDS YP_003162411.1 256833684 8381629 2659558..2661012 1 NC_013174.1 KEGG: pmr:PMI0886 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; adenylosuccinate lyase 2661012 8381629 Jden_2476 Jonesia denitrificans DSM 20603 adenylosuccinate lyase YP_003162411.1 2659558 D 471856 CDS YP_003162412.1 256833685 8381630 2661002..2661571 1 NC_013174.1 hypothetical protein 2661571 8381630 Jden_2477 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162412.1 2661002 D 471856 CDS YP_003162413.1 256833686 8381631 2661604..2662098 1 NC_013174.1 PFAM: glutathione peroxidase; KEGG: see:SNSL254_A1452 peroxiredoxin Hyr1; glutathione peroxidase 2662098 8381631 Jden_2478 Jonesia denitrificans DSM 20603 glutathione peroxidase YP_003162413.1 2661604 D 471856 CDS YP_003162414.1 256833687 8381632 complement(2662070..2664292) 1 NC_013174.1 PFAM: glycoside hydrolase clan GH-D; KEGG: mmw:Mmwyl1_2011 glycoside hydrolase clan GH-D; glycoside hydrolase clan GH-D 2664292 8381632 Jden_2479 Jonesia denitrificans DSM 20603 glycoside hydrolase clan GH-D YP_003162414.1 2662070 R 471856 CDS YP_003162415.1 256833688 8381633 complement(2664425..2665450) 1 NC_013174.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; transcriptional regulator, LacI family 2665450 8381633 Jden_2480 Jonesia denitrificans DSM 20603 transcriptional regulator, LacI family YP_003162415.1 2664425 R 471856 CDS YP_003162416.1 256833689 8381634 complement(2665519..2665764) 1 NC_013174.1 SMART: helix-turn-helix domain protein; KEGG: eli:ELI_14440 transcriptional regulator; XRE family transcriptional regulator 2665764 8381634 Jden_2481 Jonesia denitrificans DSM 20603 XRE family transcriptional regulator YP_003162416.1 2665519 R 471856 CDS YP_003162417.1 256833690 8381635 complement(2665764..2666405) 1 NC_013174.1 hypothetical protein 2666405 8381635 Jden_2482 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162417.1 2665764 R 471856 CDS YP_003162418.1 256833691 8381636 complement(2666514..2667224) 1 NC_013174.1 KEGG: bcy:Bcer98_2112 hypothetical protein; hypothetical protein 2667224 8381636 Jden_2483 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162418.1 2666514 R 471856 CDS YP_003162419.1 256833692 8381637 complement(2667383..2668807) 1 NC_013174.1 PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; KEGG: scl:sce1624 hypothetical protein; glutamyl-tRNA reductase 2668807 8381637 Jden_2484 Jonesia denitrificans DSM 20603 glutamyl-tRNA reductase YP_003162419.1 2667383 R 471856 CDS YP_003162420.1 256833693 8381638 2668856..2669917 1 NC_013174.1 KEGG: bcb:BCB4264_A1103 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 2669917 8381638 Jden_2485 Jonesia denitrificans DSM 20603 uroporphyrinogen decarboxylase YP_003162420.1 2668856 D 471856 CDS YP_003162421.1 256833694 8381639 2669914..2671302 1 NC_013174.1 KEGG: sus:Acid_5204 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: FAD dependent oxidoreductase; protoporphyrinogen oxidase 2671302 8381639 Jden_2486 Jonesia denitrificans DSM 20603 protoporphyrinogen oxidase YP_003162421.1 2669914 D 471856 CDS YP_003162422.1 256833695 8381640 complement(2671499..2671813) 1 NC_013174.1 hypothetical protein 2671813 8381640 Jden_2487 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162422.1 2671499 R 471856 CDS YP_003162423.1 256833696 8381641 complement(2671874..2672209) 1 NC_013174.1 hypothetical protein 2672209 8381641 Jden_2488 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162423.1 2671874 R 471856 CDS YP_003162424.1 256833697 8381642 2672393..2672623 1 NC_013174.1 hypothetical protein 2672623 8381642 Jden_2489 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162424.1 2672393 D 471856 CDS YP_003162425.1 256833698 8381643 2672625..2673944 1 NC_013174.1 PFAM: protein of unknown function DUF571; KEGG: hypothetical protein; hypothetical protein 2673944 8381643 Jden_2490 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162425.1 2672625 D 471856 CDS YP_003162426.1 256833699 8381644 2673941..2677882 1 NC_013174.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcz:BCZK1985 FtsK/SpoIIIE family protein; cell division protein FtsK 2677882 8381644 Jden_2491 Jonesia denitrificans DSM 20603 cell division protein FtsK YP_003162426.1 2673941 D 471856 CDS YP_003162427.1 256833700 8381645 2677895..2678929 1 NC_013174.1 KEGG: gme:Gmet_3234 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 2678929 8381645 Jden_2492 Jonesia denitrificans DSM 20603 porphobilinogen deaminase YP_003162427.1 2677895 D 471856 CDS YP_003162428.1 256833701 8381646 2678922..2679776 1 NC_013174.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mxa:MXAN_2657 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 2679776 8381646 Jden_2493 Jonesia denitrificans DSM 20603 uroporphyrinogen III synthase HEM4 YP_003162428.1 2678922 D 471856 CDS YP_003162429.1 256833702 8381647 2679773..2680747 1 NC_013174.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: mgm:Mmc1_3144 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 2680747 8381647 Jden_2494 Jonesia denitrificans DSM 20603 porphobilinogen synthase YP_003162429.1 2679773 D 471856 CDS YP_003162430.1 256833703 8381648 2680744..2682072 1 NC_013174.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: bav:BAV3016 glutamate-1-semialdehyde 2,1- aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 2682072 8381648 Jden_2495 Jonesia denitrificans DSM 20603 glutamate-1-semialdehyde-2,1-aminomutase YP_003162430.1 2680744 D 471856 CDS YP_003162431.1 256833704 8381649 complement(2682069..2682749) 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: psb:Psyr_3154 regulatory protein, TetR; TetR family transcriptional regulator 2682749 8381649 Jden_2496 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003162431.1 2682069 R 471856 CDS YP_003162432.1 256833705 8381650 complement(2683078..2683317) 1 NC_013174.1 hypothetical protein 2683317 8381650 Jden_2497 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162432.1 2683078 R 471856 CDS YP_003162433.1 256833706 8381651 complement(2683409..2683936) 1 NC_013174.1 hypothetical protein 2683936 8381651 Jden_2498 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162433.1 2683409 R 471856 CDS YP_003162434.1 256833707 8381652 2684054..2684479 1 NC_013174.1 PFAM: protein of unknown function DUF156; KEGG: xau:Xaut_3092 hypothetical protein; hypothetical protein 2684479 8381652 Jden_2499 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162434.1 2684054 D 471856 CDS YP_003162435.1 256833708 8381653 2684525..2684878 1 NC_013174.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cti:RALTA_A3125 putative copper ion binding protein; heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2684878 8381653 Jden_2500 Jonesia denitrificans DSM 20603 heavy metal transport/detoxification protein YP_003162435.1 2684525 D 471856 CDS YP_003162436.1 256833709 8381654 2685089..2687521 1 NC_013174.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BSU33500 hypothetical protein; heavy metal translocating P-type ATPase 2687521 8381654 Jden_2501 Jonesia denitrificans DSM 20603 heavy metal translocating P-type ATPase YP_003162436.1 2685089 D 471856 CDS YP_003162437.1 256833710 8381655 2687561..2688241 1 NC_013174.1 PFAM: copper resistance protein CopC; KEGG: bha:BH2291 hypothetical protein; copper resistance protein CopC 2688241 8381655 Jden_2502 Jonesia denitrificans DSM 20603 copper resistance protein CopC YP_003162437.1 2687561 D 471856 CDS YP_003162438.1 256833711 8381656 2688238..2689029 1 NC_013174.1 PFAM: Abortive infection protein; KEGG: dal:Dalk_0566 abortive infection protein; Abortive infection protein 2689029 8381656 Jden_2503 Jonesia denitrificans DSM 20603 Abortive infection protein YP_003162438.1 2688238 D 471856 CDS YP_003162439.1 256833712 8381657 complement(2689016..2689750) 1 NC_013174.1 KEGG: bav:BAV2421 membrane protein; hypothetical protein 2689750 8381657 Jden_2504 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162439.1 2689016 R 471856 CDS YP_003162440.1 256833713 8381658 2689884..2692472 1 NC_013174.1 PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase; hypothetical protein 2692472 8381658 Jden_2505 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162440.1 2689884 D 471856 CDS YP_003162441.1 256833714 8381659 complement(2692450..2693670) 1 NC_013174.1 PFAM: YibE/F family protein; KEGG: mgm:Mmc1_2300 YibE/F family protein; hypothetical protein 2693670 8381659 Jden_2506 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162441.1 2692450 R 471856 CDS YP_003162442.1 256833715 8381660 complement(2693793..2694074) 1 NC_013174.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: tcx:Tcr_1180 histone-like DNA-binding protein; histone family protein DNA-binding protein 2694074 8381660 Jden_2507 Jonesia denitrificans DSM 20603 histone family protein DNA-binding protein YP_003162442.1 2693793 R 471856 CDS YP_003162443.1 256833716 8381661 2694298..2695482 1 NC_013174.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: psa:PST_0932 nucleotide methyltransferase, putative; rRNA (guanine-N(2)-)-methyltransferase 2695482 8381661 Jden_2508 Jonesia denitrificans DSM 20603 rRNA (guanine-N(2)-)-methyltransferase YP_003162443.1 2694298 D 471856 CDS YP_003162444.1 256833717 8381662 complement(2695448..2696605) 1 NC_013174.1 PFAM: aminotransferase class I and II; KEGG: pfo:Pfl01_2696 aminotransferase, class I and II; class I and II aminotransferase 2696605 8381662 Jden_2509 Jonesia denitrificans DSM 20603 class I and II aminotransferase YP_003162444.1 2695448 R 471856 CDS YP_003162445.1 256833718 8381663 2696790..2697326 1 NC_013174.1 SMART: regulatory protein MarR; KEGG: transcriptional regulator, MarR family; transcriptional regulator, MarR family 2697326 8381663 Jden_2510 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003162445.1 2696790 D 471856 CDS YP_003162446.1 256833719 8381664 complement(2697331..2698125) 1 NC_013174.1 KEGG: vha:VIBHAR_05800 hypothetical protein; hypothetical protein 2698125 8381664 Jden_2511 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162446.1 2697331 R 471856 CDS YP_003162447.1 256833720 8381665 complement(2698122..2699033) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_03389 lantibiotic transport ATP- binding protein; ABC transporter 2699033 8381665 Jden_2512 Jonesia denitrificans DSM 20603 ABC transporter YP_003162447.1 2698122 R 471856 CDS YP_003162448.1 256833721 8381666 2699182..2700456 1 NC_013174.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase; histidine kinase 2700456 8381666 Jden_2513 Jonesia denitrificans DSM 20603 histidine kinase YP_003162448.1 2699182 D 471856 CDS YP_003162449.1 256833722 8381667 2700463..2701155 1 NC_013174.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator; two component transcriptional regulator, LuxR family 2701155 8381667 Jden_2514 Jonesia denitrificans DSM 20603 two component transcriptional regulator, LuxR family YP_003162449.1 2700463 D 471856 CDS YP_003162450.1 256833723 8381668 2701184..2701708 1 NC_013174.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_1544 hypothetical protein; transcriptional regulator, MarR family 2701708 8381668 Jden_2515 Jonesia denitrificans DSM 20603 transcriptional regulator, MarR family YP_003162450.1 2701184 D 471856 CDS YP_003162451.1 256833724 8381669 complement(2701694..2702683) 1 NC_013174.1 KEGG: sus:Acid_1173 alpha/beta hydrolase; Esterase/lipase-like protein 2702683 8381669 Jden_2516 Jonesia denitrificans DSM 20603 Esterase/lipase-like protein YP_003162451.1 2701694 R 471856 CDS YP_003162452.1 256833725 8381670 complement(2702739..2703344) 1 NC_013174.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: cvi:CV_3208 hypothetical protein; phospholipid/glycerol acyltransferase 2703344 8381670 Jden_2517 Jonesia denitrificans DSM 20603 phospholipid/glycerol acyltransferase YP_003162452.1 2702739 R 471856 CDS YP_003162453.1 256833726 8381671 complement(2703510..2704313) 1 NC_013174.1 PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein; hypothetical protein 2704313 8381671 Jden_2518 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162453.1 2703510 R 471856 CDS YP_003162454.1 256833727 8381672 complement(2704449..2705822) 1 NC_013174.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: bha:BH4029 replicative DNA helicase; replicative DNA helicase 2705822 8381672 Jden_2519 Jonesia denitrificans DSM 20603 replicative DNA helicase YP_003162454.1 2704449 R 471856 CDS YP_003162455.1 256833728 8381673 complement(2705894..2706088) 1 NC_013174.1 hypothetical protein 2706088 8381673 Jden_2520 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162455.1 2705894 R 471856 CDS YP_003162456.1 256833729 8381674 2706157..2707524 1 NC_013174.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2162 MATE efflux family protein; MATE efflux family protein 2707524 8381674 Jden_2521 Jonesia denitrificans DSM 20603 MATE efflux family protein YP_003162456.1 2706157 D 471856 CDS YP_003162457.1 256833730 8381675 complement(2707652..2708104) 1 NC_013174.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: gme:Gmet_2841 50S ribosomal protein L9; 50S ribosomal protein L9 2708104 8381675 Jden_2522 Jonesia denitrificans DSM 20603 50S ribosomal protein L9 YP_003162457.1 2707652 R 471856 CDS YP_003162458.1 256833731 8381676 complement(2708123..2708359) 1 NC_013174.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: bha:BH4048 30S ribosomal protein S18; 30S ribosomal protein S18 2708359 8381676 Jden_2523 Jonesia denitrificans DSM 20603 30S ribosomal protein S18 YP_003162458.1 2708123 R 471856 CDS YP_003162459.1 256833732 8381677 complement(2708420..2708986) 1 NC_013174.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bsu:BSU40900 single-strand DNA-binding protein; single-strand binding protein 2708986 8381677 Jden_2524 Jonesia denitrificans DSM 20603 single-strand binding protein YP_003162459.1 2708420 R 471856 CDS YP_003162460.1 256833733 8381678 complement(2709038..2709325) 1 NC_013174.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: gdi:GDI3333 30S ribosomal protein S6; 30S ribosomal protein S6 2709325 8381678 Jden_2525 Jonesia denitrificans DSM 20603 30S ribosomal protein S6 YP_003162460.1 2709038 R 471856 CDS YP_003162461.1 256833734 8381679 complement(2709550..2711844) 1 NC_013174.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PT repeat-containing protein; KEGG: mes:Meso_3986 penicillin-binding protein, 1A family; peptidoglycan glycosyltransferase 2711844 8381679 Jden_2526 Jonesia denitrificans DSM 20603 peptidoglycan glycosyltransferase YP_003162461.1 2709550 R 471856 CDS YP_003162462.1 256833735 8381680 2712149..2712757 1 NC_013174.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A2655 hypothetical protein; transcriptional regulator, PadR-like family 2712757 8381680 Jden_2527 Jonesia denitrificans DSM 20603 transcriptional regulator, PadR-like family YP_003162462.1 2712149 D 471856 CDS YP_003162463.1 256833736 8381681 2712804..2713895 1 NC_013174.1 TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: mno:Mnod_4642 myo-inositol-1-phosphate synthase; inositol 1-phosphate synthase 2713895 8381681 Jden_2528 Jonesia denitrificans DSM 20603 inositol 1-phosphate synthase YP_003162463.1 2712804 D 471856 CDS YP_003162464.1 256833737 8381682 2714045..2715331 1 NC_013174.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5797 hypothetical protein; major facilitator superfamily protein 2715331 8381682 Jden_2529 Jonesia denitrificans DSM 20603 major facilitator superfamily protein YP_003162464.1 2714045 D 471856 CDS YP_003162465.1 256833738 8381683 2715423..2715839 1 NC_013174.1 hypothetical protein 2715839 8381683 Jden_2530 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162465.1 2715423 D 471856 CDS YP_003162466.1 256833739 8381684 2715836..2716756 1 NC_013174.1 hypothetical protein 2716756 8381684 Jden_2531 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162466.1 2715836 D 471856 CDS YP_003162467.1 256833740 8381685 complement(2716995..2717384) 1 NC_013174.1 hypothetical protein 2717384 8381685 Jden_2532 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162467.1 2716995 R 471856 CDS YP_003162468.1 256833741 8381686 2717789..2718934 1 NC_013174.1 KEGG: pde:Pden_5043 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 2718934 8381686 Jden_2533 Jonesia denitrificans DSM 20603 UDP-galactopyranose mutase YP_003162468.1 2717789 D 471856 CDS YP_003162469.1 256833742 8381687 2719330..2721771 1 NC_013174.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_0214 glycoside hydrolase family 3 protein; glycoside hydrolase family 3 2721771 8381687 Jden_2534 Jonesia denitrificans DSM 20603 glycoside hydrolase family 3 YP_003162469.1 2719330 D 471856 CDS YP_003162470.1 256833743 8381688 2721834..2722475 1 NC_013174.1 hypothetical protein 2722475 8381688 Jden_2535 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162470.1 2721834 D 471856 CDS YP_003162471.1 256833744 8381689 2722482..2723501 1 NC_013174.1 PFAM: glycosyl transferase family 2; KEGG: bsu:BSU34300 hypothetical protein; family 2 glycosyl transferase 2723501 8381689 Jden_2536 Jonesia denitrificans DSM 20603 family 2 glycosyl transferase YP_003162471.1 2722482 D 471856 CDS YP_003162472.1 256833745 8381690 complement(2723494..2726712) 1 NC_013174.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: eca:ECA4114 putative lysine/ornithine decarboxylase; Orn/DAP/Arg decarboxylase 2 2726712 8381690 Jden_2537 Jonesia denitrificans DSM 20603 Orn/DAP/Arg decarboxylase 2 YP_003162472.1 2723494 R 471856 CDS YP_003162473.1 256833746 8381691 complement(2726713..2727771) 1 NC_013174.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rso:RSp0417 cysteine synthase A protein; pyridoxal-5'-phosphate-dependent protein subunit beta 2727771 8381691 Jden_2538 Jonesia denitrificans DSM 20603 pyridoxal-5'-phosphate-dependent protein subunit beta YP_003162473.1 2726713 R 471856 CDS YP_003162474.1 256833747 8381692 complement(2727921..2729516) 1 NC_013174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cti:RALTA_B0293 putative ABC transporter ATP- binding protein; ABC transporter 2729516 8381692 Jden_2539 Jonesia denitrificans DSM 20603 ABC transporter YP_003162474.1 2727921 R 471856 CDS YP_003162475.1 256833748 8381693 2729884..2730546 1 NC_013174.1 PFAM: regulatory protein TetR; KEGG: ade:Adeh_1261 TetR family transcriptional regulator; TetR family transcriptional regulator 2730546 8381693 Jden_2540 Jonesia denitrificans DSM 20603 TetR family transcriptional regulator YP_003162475.1 2729884 D 471856 CDS YP_003162476.1 256833749 8381694 2730637..2731602 1 NC_013174.1 KEGG: dol:Dole_1251 membrane protein; membrane protein 2731602 8381694 Jden_2541 Jonesia denitrificans DSM 20603 membrane protein YP_003162476.1 2730637 D 471856 CDS YP_003162477.1 256833750 8381695 complement(2731663..2733141) 1 NC_013174.1 KEGG: hypothetical protein; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 2733141 8381695 Jden_2542 Jonesia denitrificans DSM 20603 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_003162477.1 2731663 R 471856 CDS YP_003162478.1 256833751 8381696 2733261..2733881 1 NC_013174.1 PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; NUDIX hydrolase 2733881 8381696 Jden_2543 Jonesia denitrificans DSM 20603 NUDIX hydrolase YP_003162478.1 2733261 D 471856 CDS YP_003162479.1 256833752 8381697 2733916..2736378 1 NC_013174.1 KEGG: similar to mucin 17; hypothetical protein 2736378 8381697 Jden_2544 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162479.1 2733916 D 471856 CDS YP_003162480.1 256833753 8381698 2736375..2738033 1 NC_013174.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN 2738033 8381698 Jden_2545 Jonesia denitrificans DSM 20603 integral membrane protein MviN YP_003162480.1 2736375 D 471856 CDS YP_003162481.1 256833754 8381699 2738100..2739785 1 NC_013174.1 KEGG: aba:Acid345_1760 serine/threonine protein kinase; hypothetical protein 2739785 8381699 Jden_2546 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162481.1 2738100 D 471856 CDS YP_003162482.1 256833755 8381700 2739900..2740841 1 NC_013174.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_2753 thioredoxin reductase; thioredoxin reductase 2740841 8381700 Jden_2547 Jonesia denitrificans DSM 20603 thioredoxin reductase YP_003162482.1 2739900 D 471856 CDS YP_003162483.1 256833756 8381701 2740852..2741181 1 NC_013174.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tcx:Tcr_0127 thioredoxin; thioredoxin 2741181 8381701 Jden_2548 Jonesia denitrificans DSM 20603 thioredoxin YP_003162483.1 2740852 D 471856 CDS YP_003162484.1 256833757 8381702 2741341..2742651 1 NC_013174.1 PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein; GntR family transcriptional regulator 2742651 8381702 Jden_2549 Jonesia denitrificans DSM 20603 GntR family transcriptional regulator YP_003162484.1 2741341 D 471856 CDS YP_003162485.1 256833758 8381703 2742648..2743607 1 NC_013174.1 PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; KEGG: ade:Adeh_3774 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 2743607 8381703 Jden_2550 Jonesia denitrificans DSM 20603 D-alanine--D-alanine ligase YP_003162485.1 2742648 D 471856 CDS YP_003162486.1 256833759 8381704 complement(2743815..2744954) 1 NC_013174.1 KEGG: bsu:BSU40960 site-specific DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 2744954 8381704 Jden_2551 Jonesia denitrificans DSM 20603 parB-like partition protein YP_003162486.1 2743815 R 471856 CDS YP_003162487.1 256833760 8381705 complement(2744988..2745926) 1 NC_013174.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH4058 centromere-like function involved in forespore chromosome partition; Cobyrinic acid ac-diamide synthase 2745926 8381705 Jden_2552 Jonesia denitrificans DSM 20603 Cobyrinic acid ac-diamide synthase YP_003162487.1 2744988 R 471856 CDS YP_003162488.1 256833761 8381706 complement(2746267..2746899) 1 NC_013174.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ccs:CCNA_03870 methyltransferase GidB; methyltransferase GidB 2746899 8381706 Jden_2553 Jonesia denitrificans DSM 20603 methyltransferase GidB YP_003162488.1 2746267 R 471856 CDS YP_003162489.1 256833762 8381707 complement(2746962..2747462) 1 NC_013174.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: bha:BH4063 spoIIIJ-associated protein; single-stranded nucleic acid binding R3H domain-containing protein 2747462 8381707 Jden_2554 Jonesia denitrificans DSM 20603 single-stranded nucleic acid binding R3H domain-containing protein YP_003162489.1 2746962 R 471856 CDS YP_003162490.1 256833763 8381708 complement(2747492..2748439) 1 NC_013174.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: bsu:BSU41040 OxaA-like protein precursor; 60 kDa inner membrane insertion protein 2748439 8381708 Jden_2555 Jonesia denitrificans DSM 20603 60 kDa inner membrane insertion protein YP_003162490.1 2747492 R 471856 CDS YP_003162491.1 256833764 8381709 complement(2748443..2748784) 1 NC_013174.1 PFAM: protein of unknown function DUF37; KEGG: pmy:Pmen_4540 hypothetical protein; hypothetical protein 2748784 8381709 Jden_2556 Jonesia denitrificans DSM 20603 hypothetical protein YP_003162491.1 2748443 R 471856 CDS YP_003162492.1 256833765 8381710 complement(2748781..2749056) 1 NC_013174.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rsq:Rsph17025_0069 ribonuclease P protein component; ribonuclease P protein component 2749056 8381710 Jden_2557 Jonesia denitrificans DSM 20603 ribonuclease P protein component YP_003162492.1 2748781 R 471856 CDS YP_003162493.1 256833766 8381711 complement(2749146..2749283) 1 NC_013174.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: sus:Acid_1093 50S ribosomal protein L34P; 50S ribosomal protein L34 2749283 8381711 Jden_2558 Jonesia denitrificans DSM 20603 50S ribosomal protein L34 YP_003162493.1 2749146 R 471856 CDS